Psyllid ID: psy13883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------91
Protein Sequence
MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVFSKAKAAKTTTTTTTTTTTTTTTTNYLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHLG
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccHHHHccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccEEEEEcccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccEEEHHHHHccHHHHHHHHHHHHEEEEHHHHHHHcccccEEEEEEEEEEEEEEEEcEEEEEEccccccccccHHHHHHHHHEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcEEEEEEcccEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccHHHEccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHccccccEEEEEccccccccEEcccccccccccccccEccccccHHcccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccEEEEEEccccccccHHccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHccccccEEEcccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEEEcccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccHHHHHcEEEEEcccHHHHEccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHEEEEEEEHEEHHcHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLKTMEHECKekfivfpnperiDKVQESMENLEDVIRERNVAYFQLetthtgerpaelIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTiqrskepkvdykapmtnfHYYFKRCLLIFCLYLCSGlkevytkseydvpkelnkewqknnpvidnrTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLqrclaepygigalnniyKNEEKEVAQIFATYkdvdveavqekypdvdveevrqrsllfvpvplvaifhgrdfctstynrdnpeneatfshpninfhffpfLLFRHIQMLRKHPIQkaihtssklldlneffdspknfgaeqVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEkfivfpnperidknffpnfidpnllnvpnfikCSVSSYRYVLLKEQNMLKTMEHECKEkfivfpnperiDKVQESMENLEDVIRERNVAYFQLetthtgerpaelIDNAFGLkevytkseydvpkelnkewqknnpvidnrTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYkdvdveavqekypdvdveEMCVKRVSSKvllnesdlLGHEIRKLRttiglpgrdlretpNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVFSKakaakttttttttttttttttnyllpitmsrydscpryLNMAIICTYVLVEGrrlewgmfkKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLetthtgerpaeLIDNAFGKYLSSFHvsssclkevytkseydvpkelnkewqknnpvidnrTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLqrclaepygigvyyydsegyqppttlLSNHLQRclaepygigaLNNIYEHLG
Flexible Loop (DISEMBL)
mlktmeheckekfivfpnperidKVQESMENLEDVIRERNVAYFQLEtthtgerpaeLIDNAFVCILKDKVFLFTPVLNMVFACLIRKvkntiqrskepkvdykapmTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKElnkewqknnpvidnrtlAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQekypdvdveevRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFdspknfgaeqvrvgrswrkeelrvksssdlhkLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKfivfpnperiDKVQESMENLEDVIRERNVAYFQLetthtgerpaelidNAFGLKEVYTKSEydvpkelnkewqknnpvidnrtlAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEkypdvdveemCVKRvsskvllnesdllgheirklrttiglpgrdlRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKsvfskakaakttttttttttttttttnyllpitMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLetthtgerpaELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDvpkelnkewqknnpvidnrtlAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHLG
Low Complexity Region (SEG)
MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTlavkkflvllkekllkkeyakmkSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTlavkkflvllkekllkkeyakmkNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVFSKAKAAKttttttttttttttttNYLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTlavkkflvllkekllkkeyakmkSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHLG
Disordered region (IsUnstruct)
***********KFIVFP**************LEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDN**NEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDK******NLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVF************************YLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYE***
Disordered Region (DISOPRED)
MLKT***ECK****VFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLI******************APMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFH*********************************L******LR**PIQKAIHTSSKLLDLNEFFDSPKNF**********WRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHEC**************************LNVPNFIKCSVSSYRYVLLKEQNMLKT******************************VIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKE***************EVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVS*KVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVFSKAKAAKTTTTTTTTTTTTTTTTNYLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKL***********VFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHL*
Disordered Region (DISEMBL)
MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVF******************TTTTTNYLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHLG
Disordered Region (DISPRO)
MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVFSKA******************TTNYLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKTMEHECKEKFIVFPNPERxxxxxxxxxxxxxxxxxxxxxYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNMVFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERxxxxxxxxxxxxxxxxxxxxxYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAILVMKVLQSVQIFKIGKSVFSKAKAAKTTTTTTTTTTTTTTTTNYLLPITMSRYDSCPRYLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSxxxxxxxxxxxxxxxxxxxxxYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVYYYDSEGYQPPTTLLSNHLQRCLAEPYGIGALNNIYEHLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	908	2.2.26 [Sep-21-2011]
Q9HD33	250	39S ribosomal protein L47	yes	N/A	0.077	0.28	0.536	8e-19
Q8K2Y7	252	39S ribosomal protein L47	yes	N/A	0.074	0.269	0.548	1e-18
Q08DT6	252	39S ribosomal protein L47	yes	N/A	0.072	0.261	0.537	9e-18
P87232	144	54S ribosomal protein L4,	yes	N/A	0.057	0.361	0.461	3e-05
Q2H080	272	54S ribosomal protein L4,	N/A	N/A	0.079	0.264	0.386	0.0002
A2QCC7	273	54S ribosomal protein L4,	yes	N/A	0.046	0.153	0.5	0.0004
A6SLT9	252	54S ribosomal protein L4,	N/A	N/A	0.060	0.218	0.448	0.0005
A7EWR0	191	54S ribosomal protein L4,	N/A	N/A	0.060	0.287	0.448	0.0007

>sp|Q9HD33|RM47_HUMAN 39S ribosomal protein L47, mitochondrial OS=Homo sapiens GN=MRPL47 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 60/82 (73%)

Query: 317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
           + +HT+     L EFFD PKN+G E+V+ G +W  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct: 53  RLLHTTLSRKGLEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNML 112

Query: 377 KTMEHECKEKFIVFPNPERIDK 398
            T+E E K + +  P+PER+DK
Sbjct: 113 LTLEQEAKRQRLPMPSPERLDK 134

Homo sapiens (taxid: 9606)

>sp|Q8K2Y7|RM47_MOUSE 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query: 317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
           K +HT+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct: 55  KLLHTTLSRKGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114

Query: 377 KTMEHECKEKFIVFPNPERIDK 398
            T+E E K + +  P+PER++K
Sbjct: 115 LTLEQEAKRQRLPMPSPERLEK 136

Mus musculus (taxid: 10090)

>sp|Q08DT6|RM47_BOVIN 39S ribosomal protein L47, mitochondrial OS=Bos taurus GN=MRPL47 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 58/80 (72%)

Query: 319 IHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKT 378
           + T+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML T
Sbjct: 57  LQTTLSRRGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLT 116

Query: 379 MEHECKEKFIVFPNPERIDK 398
           +E E K + +  P+PER++K
Sbjct: 117 LEQEAKRQRLPMPSPERLEK 136

Bos taurus (taxid: 9913)

>sp|P87232|RM04_SCHPO 54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl4 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 340 AEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFP 391
           +E+ + GR+W  EELR KS +DLH LWY  L+E+N+L T   E K   +  P
Sbjct: 52  SEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEMKRLQLTIP 103

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2H080|RM04_CHAGB 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MRPL4 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 328 LNEFFDSPK---NFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
           L EFF +     N   E  + GRSW  EELR KS  DLH+LW+V  KE+N + T   E  
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 385 EKFIVFPNPERIDKN 399
           +  + F   E  +++
Sbjct: 159 KSGLGFGEAEMRERD 173

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|A2QCC7|RM04_ASPNC 54S ribosomal protein L4, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mrpl4 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 343 VRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
           +  GRSW  +ELR KS  DLH LW+V +KE+N + T + E K
Sbjct: 120 IECGRSWSIQELREKSWDDLHSLWWVCVKERNRIATSDMERK 161

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|A6SLT9|RM04_BOTFB 54S ribosomal protein L4, mitochondrial OS=Botryotinia fuckeliana (strain B05.10) GN=mrpl4 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 328 LNEFF---DSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
           L EFF   D   +  AE+   GR W  EELR KS  DLH LW++  KE+N + T  +E
Sbjct: 105 LYEFFRHKDKALSTPAEEGSHGRPWSAEELRGKSWEDLHSLWWICCKERNRIATESYE 162

Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

>sp|A7EWR0|RM04_SCLS1 54S ribosomal protein L4, mitochondrial OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=MRPL4 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 328 LNEFF---DSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
           L EFF   D   +  AE+   GR W  EELR KS  DLH LW++  KE+N + T  +E
Sbjct: 44  LYEFFRHKDKALSTPAEEGNHGRPWSAEELRGKSWEDLHSLWWICCKERNRIATESYE 101

Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	908
170039292	265	39S ribosomal protein L47, mitochondrial	0.223	0.766	0.374	9e-39
383859861	268	PREDICTED: 39S ribosomal protein L47, mi	0.241	0.817	0.345	7e-37
307175263	268	39S ribosomal protein L47, mitochondrial	0.224	0.761	0.353	1e-35
357608750	254	hypothetical protein KGM_07716 [Danaus p	0.226	0.811	0.371	5e-34
156555746	271	PREDICTED: 39S ribosomal protein L47, mi	0.178	0.597	0.453	4e-33
242247523	246	39S ribosomal protein L47, mitochondrial	0.174	0.642	0.477	5e-33
198454021	268	GA27426 [Drosophila pseudoobscura pseudo	0.231	0.783	0.335	1e-32
195152714	268	GL22226 [Drosophila persimilis] gi|19411	0.231	0.783	0.335	1e-32
119112936	268	AGAP002218-PA [Anopheles gambiae str. PE	0.172	0.585	0.475	2e-32
380014388	268	PREDICTED: 39S ribosomal protein L47, mi	0.226	0.768	0.377	2e-32

>gi|170039292|ref|XP_001847474.1| 39S ribosomal protein L47, mitochondrial [Culex quinquefasciatus] gi|167862875|gb|EDS26258.1| 39S ribosomal protein L47, mitochondrial [Culex quinquefasciatus]

 Score =  169 bits (427), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 140/262 (53%), Gaps = 59/262 (22%)

Query: 322 SSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEH 381
           SS+  DL EFF+  KN G  +V+ GR+W K+ELR+KS++DLHKLW+VLLKE+NML TMEH
Sbjct: 48  SSRRYDLAEFFEDKKNLGENEVKHGRAWNKDELRIKSNADLHKLWFVLLKERNMLLTMEH 107

Query: 382 ECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHEC 441
           EC EK  +FP+PER+DK      ++ ++ N+ + ++                        
Sbjct: 108 ECNEKMELFPSPERLDK------VNESMTNLEDVVR------------------------ 137

Query: 442 KEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVY 501
                                       ERN AYF+LET  TGERPA+L+ N  GLK  Y
Sbjct: 138 ----------------------------ERNRAYFELETGETGERPAKLVTNQLGLKFYY 169

Query: 502 TKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFA 561
              E+ +PK  N++W++ +     R  AV KFL + +EKL   +  +   E  EV  +  
Sbjct: 170 RMFEHVIPKYANRKWKETHQ-FHYRGSAVHKFLRMYREKLYNVKRKQRNRERNEVMHLLK 228

Query: 562 TYKDVDVEAVQEKYPDVDVEEM 583
            +  +D  A+ EKYP VDVE++
Sbjct: 229 RFPGMDRVALAEKYPSVDVEKL 250

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859861|ref|XP_003705410.1| PREDICTED: 39S ribosomal protein L47, mitochondrial-like [Megachile rotundata]

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 146/278 (52%), Gaps = 59/278 (21%)

Query: 319 IHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKT 378
           +HT+ K  +L EFFD PKN+G ++++VGRSW+K+ELR+KS+ DLHKLW+VLLKE+NML T
Sbjct: 50  LHTTLKQNNLMEFFDDPKNWGKDKIKVGRSWQKDELRLKSNEDLHKLWFVLLKERNMLLT 109

Query: 379 MEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTME 438
           ME   K+++  FPNPER+DK      ++ ++LN+ + ++    +Y               
Sbjct: 110 MEEAYKQEWKYFPNPERLDK------VEDSMLNLESVVRERNKAY--------------- 148

Query: 439 HECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLK 498
                                                  LET  TGERPAEL  N  G++
Sbjct: 149 -------------------------------------HMLETGTTGERPAELRYNPLGIR 171

Query: 499 EVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQ 558
             Y   +Y +P+ +N +W K +      + AV KFL L +EKL   +      +  +VA 
Sbjct: 172 SCYRMRQYRIPRFMNSKWHKTHKFSYGGS-AVHKFLRLYREKLWNIKRRARNRQNNQVAV 230

Query: 559 IFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNE 596
           +   + ++D+EAV+EKYPD D+E++   R S    + E
Sbjct: 231 LMRIFPNLDLEAVKEKYPDADIEKLQRNRKSDGHFVRE 268

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175263|gb|EFN65309.1| 39S ribosomal protein L47, mitochondrial [Camponotus floridanus]

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 59/263 (22%)

Query: 319 IHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKT 378
           IH +    DL EFFD PKN+G  +V+VGRSWRK+ELR+KS+SDLHKLWYVLLKE+NML T
Sbjct: 50  IHITPDNRDLMEFFDEPKNWGRNEVKVGRSWRKDELRLKSNSDLHKLWYVLLKERNMLMT 109

Query: 379 MEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTME 438
           ME  CK++  +FPNPER+DK      +  ++ N+ + ++    +Y        +ML+T E
Sbjct: 110 MEEVCKDENKIFPNPERLDK------VKDSMNNLESVVRERNRAY--------HMLETGE 155

Query: 439 HECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLK 498
                                                       TGERP +L+ N  GLK
Sbjct: 156 --------------------------------------------TGERPGKLVYNCLGLK 171

Query: 499 EVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQ 558
             +   +Y +PK +N++W K +        A ++FL L +EK+  ++      ++  VA 
Sbjct: 172 FYHRMHQYIIPKYMNRKWHKWHK-FGFGGFATRRFLRLYREKIWNQKRRARNRDKNRVAV 230

Query: 559 IFATYKDVDVEAVQEKYPDVDVE 581
           + + + +VD+EAV++ +P+VD+E
Sbjct: 231 LMSKFPNVDIEAVKQHFPNVDLE 253

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608750|gb|EHJ66131.1| hypothetical protein KGM_07716 [Danaus plexippus]

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 139/269 (51%), Gaps = 63/269 (23%)

Query: 317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
           K  HT++K  DL EFFD  KN           W +  ++V  S  L +L           
Sbjct: 31  KGFHTTTKNQDLMEFFDEKKN-----------WNENNIKVGRSWKLDEL----------- 68

Query: 377 KTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKT 436
                             RI  N                    +    YVLLKE+NML T
Sbjct: 69  ------------------RIKSN------------------TDLHKLWYVLLKERNMLYT 92

Query: 437 MEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFG 496
           MEHEC ++  +FPNPERIDKV+ESM+++E V+RERNVAY+QLET  TGERP E + N FG
Sbjct: 93  MEHECNDQVKLFPNPERIDKVEESMKHIETVVRERNVAYYQLETGETGERPVEEVVNLFG 152

Query: 497 LKEVYTKSEYDVPKELNKEWQKNNPVIDN---RTLAVKKFLVLLKEKLLKKEYAKMKNEE 553
           L E Y++ EY +PK +N  W K    +D+    ++AVKKF  L KEK   +E      + 
Sbjct: 153 LPENYSQKEYFLPKFMNTRWIKT--YLDHGYINSVAVKKFYRLYKEKQHNEERKARNRDF 210

Query: 554 KEVAQIFATYKDVDVEAVQEKYPDVDVEE 582
             V  +   + D+D++A++ +YP+VD+E+
Sbjct: 211 NHVQHLLKRFPDMDMDALKAEYPNVDIEK 239

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555746|ref|XP_001602355.1| PREDICTED: 39S ribosomal protein L47, mitochondrial-like [Nasonia vitripennis]

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
           YVLLKE+NML TMEH C E + +FP+PERIDKVQESM+N+E V+RERN AY+QLET  TG
Sbjct: 98  YVLLKERNMLMTMEHACNEAYELFPSPERIDKVQESMKNIETVVRERNEAYYQLETGETG 157

Query: 485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKK 544
           ERP + + N  G+K+ Y   ++ +PK LN +W++ + +      AV+KF  L +EKL  +
Sbjct: 158 ERPTKYVWNILGMKQFYRLKQHLIPKHLNTKWKQRH-LFGYGGHAVRKFQKLYREKLWNE 216

Query: 545 EYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKR 587
           +      E+  V  +   + +VD++ ++EKYP VD++++   R
Sbjct: 217 KRRAQNREKNAVISLLKKFPNVDIDTLKEKYPSVDMDKIFRSR 259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247523|ref|NP_001156252.1| 39S ribosomal protein L47, mitochondrial-like [Acyrthosiphon pisum] gi|239789446|dbj|BAH71348.1| ACYPI007741 [Acyrthosiphon pisum]

 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 105/159 (66%), Gaps = 1/159 (0%)

Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
           YVLLKE+NML TMEHECK +F +FPNPERIDKV+ESM NLE V+RERN AY++LE   + 
Sbjct: 77  YVLLKERNMLLTMEHECKAQFELFPNPERIDKVEESMNNLETVVRERNEAYYKLEVGESA 136

Query: 485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKK 544
           ERP +L+ N  GL   Y K E+ +PK LNK+W +N    +     ++KF  L +EKL   
Sbjct: 137 ERPGQLVTNLLGLNFFYRKFEHLIPKFLNKQW-RNKHTFNVVNGNIEKFQRLYREKLHNA 195

Query: 545 EYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEM 583
                  +   V  +   Y ++D+EAV+++YP VD+E++
Sbjct: 196 NRKSRNRDRNHVMHLMKRYPNMDMEAVKQQYPSVDIEKI 234

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454021|ref|XP_002137788.1| GA27426 [Drosophila pseudoobscura pseudoobscura] gi|198132616|gb|EDY68346.1| GA27426 [Drosophila pseudoobscura pseudoobscura]

 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 138/271 (50%), Gaps = 61/271 (22%)

Query: 314 PIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQ 373
           P  + +HTS     L EFFD PK++    ++VGR+WR +ELR+KS+ +LH+LW++LLKE+
Sbjct: 42  PHAQMMHTSPMRHGLMEFFDDPKHWSENDIKVGRAWRTDELRIKSNKELHQLWFILLKER 101

Query: 374 NMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNM 433
           NML TMEHEC +K  +FP+PERIDK                 +K S+ +   V ++E+N 
Sbjct: 102 NMLLTMEHECNDKMEIFPSPERIDK-----------------VKISMDNLEKV-VRERN- 142

Query: 434 LKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDN 493
                                                   AY  LET  TGERP + ++N
Sbjct: 143 ---------------------------------------TAYHLLETGETGERPQKRVNN 163

Query: 494 AFGLKEVYTKSEYDVPKELNKEWQKN-NPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNE 552
           AFGL+  Y   E+ +P  +N +W K+ N     R  AV +FL+  +E+L   +       
Sbjct: 164 AFGLQVNYKSCEHVLPPFMNLKWIKSRNIGFGGR--AVNRFLLKYREQLYNAKRKAKNRS 221

Query: 553 EKEVAQIFATYKDVDVEAVQEKYPDVDVEEM 583
             EV  I     + D+E ++ K+PDVD++++
Sbjct: 222 RNEVMMILRRNPNFDLEVLRRKFPDVDIDKL 252

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195152714|ref|XP_002017281.1| GL22226 [Drosophila persimilis] gi|194112338|gb|EDW34381.1| GL22226 [Drosophila persimilis]

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 138/271 (50%), Gaps = 61/271 (22%)

Query: 314 PIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQ 373
           P  + +HTS     L EFFD PK++    ++VGR+WR +ELR+KS+ +LH+LW++LLKE+
Sbjct: 42  PHAQMMHTSPMRHGLMEFFDDPKHWSENDIKVGRAWRTDELRIKSNKELHQLWFILLKER 101

Query: 374 NMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNM 433
           NML TMEHEC +K  +FP+PERIDK                 +K S+ +   V ++E+N 
Sbjct: 102 NMLLTMEHECNDKMEIFPSPERIDK-----------------VKISMDNLEKV-VRERN- 142

Query: 434 LKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDN 493
                                                   AY  LET  TGERP + ++N
Sbjct: 143 ---------------------------------------TAYHLLETGETGERPQKRVNN 163

Query: 494 AFGLKEVYTKSEYDVPKELNKEWQKN-NPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNE 552
           AFGL+  Y   E+ +P  +N +W K+ N     R  AV +FL+  +E+L   +       
Sbjct: 164 AFGLQVNYKSCEHVLPPFMNLKWIKSRNIGFGGR--AVNRFLLKYREQLYNAKRKAKNRS 221

Query: 553 EKEVAQIFATYKDVDVEAVQEKYPDVDVEEM 583
             EV  I     + D+E ++ K+PDVD++++
Sbjct: 222 RNEVMMILRRNPNFDLEVLRRKFPDVDIDKL 252

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112936|ref|XP_307966.3| AGAP002218-PA [Anopheles gambiae str. PEST] gi|116132807|gb|EAA03797.3| AGAP002218-PA [Anopheles gambiae str. PEST]

 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
           +VLLKE+NML TMEHECKEK  +FP+PER+DKV+ESMENLE+V+RERN AY++LET  TG
Sbjct: 90  FVLLKERNMLLTMEHECKEKMELFPSPERLDKVKESMENLEEVVRERNRAYYELETGETG 149

Query: 485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKK 544
           ERP +++ N  G++  Y   E+ +PK  N++W + +      + AV KFL L +E+L   
Sbjct: 150 ERPGKVVPNELGIRFYYRAFEHVIPKYANRKWNERHKFTFGGS-AVWKFLRLYRERLY-N 207

Query: 545 EYAKMKNEEK-EVAQIFATYKDVDVEAVQEKYPDVDVEEM 583
           E  K++N E+ EV  +   + ++D E + +++P VDVE++
Sbjct: 208 EKRKLRNRERNEVVHLLRRFPNIDRETLAQRFPTVDVEKL 247

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014388|ref|XP_003691214.1| PREDICTED: 39S ribosomal protein L47, mitochondrial-like [Apis florea]

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 137/265 (51%), Gaps = 59/265 (22%)

Query: 319 IHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKT 378
           IHT+ K  DL EFFD PKN           W K+++RV  S      W    K++  LK+
Sbjct: 50  IHTTFKNNDLMEFFDDPKN-----------WEKDKIRVGRS------W---RKDELRLKS 89

Query: 379 MEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTME 438
            E   K  F                                      VLLKE+NML TME
Sbjct: 90  NEELHKLWF--------------------------------------VLLKERNMLLTME 111

Query: 439 HECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLK 498
              KE++  FPNPERIDKV++SM NLE V+RERN AY  LET  TGERPAEL  NA G++
Sbjct: 112 EAYKEEWKYFPNPERIDKVEDSMSNLESVVRERNRAYHMLETGTTGERPAELKYNALGIR 171

Query: 499 EVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQ 558
            +Y   +Y +PK +N  W K +        AV+KFL L +EKL  ++      +  +VA 
Sbjct: 172 SLYRLRQYSIPKYMNSAWHKKHQ-FGYGGYAVRKFLRLYREKLWNEKRKLRNRQNNQVAT 230

Query: 559 IFATYKDVDVEAVQEKYPDVDVEEM 583
           +   + ++D+EAV+E+YP  ++E++
Sbjct: 231 LIRIFPNLDMEAVKEQYPLANIEKI 255

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	908
FB|FBgn0014023	271	mRpL47 "mitochondrial ribosoma	0.189	0.634	0.393	1.6e-26
UNIPROTKB|F1P1G0	215	MRPL47 "Uncharacterized protei	0.102	0.432	0.473	1.3e-24
MGI|MGI:1921850	252	Mrpl47 "mitochondrial ribosoma	0.090	0.325	0.548	8e-24
RGD|1307531	252	Mrpl47 "mitochondrial ribosoma	0.090	0.325	0.548	2.1e-23
UNIPROTKB|Q9HD33	250	MRPL47 "39S ribosomal protein	0.111	0.404	0.475	5.5e-23
UNIPROTKB|E2QXX0	252	MRPL47 "Uncharacterized protei	0.090	0.325	0.536	5.6e-23
UNIPROTKB|F1SGC7	253	MRPL47 "Uncharacterized protei	0.117	0.422	0.453	7.2e-23
UNIPROTKB|F1MNT0	252	MRPL47 "39S ribosomal protein	0.090	0.325	0.524	3.1e-22
UNIPROTKB|Q08DT6	252	MRPL47 "39S ribosomal protein	0.090	0.325	0.524	3.1e-22
WB|WBGene00015092	234	mrpl-47 [Caenorhabditis elegan	0.113	0.440	0.442	1.1e-21

FB|FBgn0014023 mRpL47 "mitochondrial ribosomal protein L47" [Drosophila melanogaster (taxid:7227)]

 Score = 309 (113.8 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 72/183 (39%), Positives = 99/183 (54%)

Query:   425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
             +VLLKE+NML TMEHEC +K  VFP+PERIDKV+ SMENLE V+RERN AY  LET  TG
Sbjct:    98 FVLLKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETG 157

Query:   485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTXXXXXXXXXXXXXXXXX 544
             ERP + + NAFGL+  Y   E+ +P  +N +W K+   I                     
Sbjct:   158 ERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRN-IGYGGRAVNRFLLKYREKLYNA 216

Query:   545 XXXXXXNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEMCVKRVSSKVLLNESDLLGHEI 604
                       EV  I     + D++ ++ ++PDV+V++          L NE  + GH +
Sbjct:   217 KRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDVNVDK----------LRNEDKIRGHYV 266

Query:   605 RKL 607
              K+
Sbjct:   267 PKV 269

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1P1G0 MRPL47 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 45/95 (47%), Positives = 62/95 (65%)

Query:   306 HIQMLRKHPIQKA--IHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLH 363
             H  + +  P+  A  +H +     L EFFD PKN+G + V+ G +W  ++LR KSS DLH
Sbjct:     7 HRNLAQAEPLCHARFLHATLPRKGLEEFFDDPKNWGEKTVKSGDAWNIKQLRAKSSQDLH 66

Query:   364 KLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDK 398
             KLWYVLLKE+NML T+E E K +    P+PER++K
Sbjct:    67 KLWYVLLKEKNMLLTLEQESKRQQKPMPSPERLEK 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1921850 Mrpl47 "mitochondrial ribosomal protein L47" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 8.0e-24, Sum P(2) = 8.0e-24
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
             K +HT+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct:    55 KLLHTTLSRKGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114

Query:   377 KTMEHECKEKFIVFPNPERIDK 398
              T+E E K + +  P+PER++K
Sbjct:   115 LTLEQEAKRQRLPMPSPERLEK 136

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1307531 Mrpl47 "mitochondrial ribosomal protein L47" [Rattus norvegicus (taxid:10116)]

 Score = 244 (91.0 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
             K +HT+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct:    55 KFLHTTLSRKGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114

Query:   377 KTMEHECKEKFIVFPNPERIDK 398
              T+E E K + +  P+PER++K
Sbjct:   115 LTLEQEAKRQRLPMPSPERLEK 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q9HD33 MRPL47 "39S ribosomal protein L47, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
 Identities = 48/101 (47%), Positives = 66/101 (65%)

Query:   298 FFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVK 357
             FF  LL +    +      + +HT+     L EFFD PKN+G E+V+ G +W  ++LR K
Sbjct:    34 FFLSLLPKSTPNVTSFHQYRLLHTTLSRKGLEEFFDDPKNWGQEKVKSGAAWTCQQLRNK 93

Query:   358 SSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDK 398
             S+ DLHKLWYVLLKE+NML T+E E K + +  P+PER+DK
Sbjct:    94 SNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLDK 134

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2QXX0 MRPL47 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 5.6e-23, Sum P(2) = 5.6e-23
 Identities = 44/82 (53%), Positives = 60/82 (73%)

Query:   317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
             + +HT+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct:    55 RLLHTTLSRKGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114

Query:   377 KTMEHECKEKFIVFPNPERIDK 398
              T+E E K + +  P+PER++K
Sbjct:   115 LTLEQEAKRQRLPMPSPERLEK 136

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1SGC7 MRPL47 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 240 (89.5 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
 Identities = 49/108 (45%), Positives = 69/108 (63%)

Query:   292 PNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRV-GRSWR 350
             P+ +  F P LL ++   +      +  HT+     L EFFD PKN+G E+V+  G SW 
Sbjct:    30 PSTSCRFSPSLLPKNTPNVTSFHQFRIFHTTFSRRGLEEFFDDPKNWGEEKVKSEGASWT 89

Query:   351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDK 398
              ++LR KS+ DLHKLWYVLLKE+NML T+E E K + +  P+PER++K
Sbjct:    90 CQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEK 137

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1MNT0 MRPL47 "39S ribosomal protein L47, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
 Identities = 43/82 (52%), Positives = 59/82 (71%)

Query:   317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
             + + T+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct:    55 RLLQTTLSRRGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114

Query:   377 KTMEHECKEKFIVFPNPERIDK 398
              T+E E K + +  P+PER++K
Sbjct:   115 LTLEQEAKRQRLPMPSPERLEK 136

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q08DT6 MRPL47 "39S ribosomal protein L47, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
 Identities = 43/82 (52%), Positives = 59/82 (71%)

Query:   317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
             + + T+     L EFFD PKN+G E+V+ G SW  ++LR KS+ DLHKLWYVLLKE+NML
Sbjct:    55 RLLQTTLSRRGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114

Query:   377 KTMEHECKEKFIVFPNPERIDK 398
              T+E E K + +  P+PER++K
Sbjct:   115 LTLEQEAKRQRLPMPSPERLEK 136

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

WB|WBGene00015092 mrpl-47 [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 50/113 (44%), Positives = 67/113 (59%)

Query:   295 NFH---FFPFLLFRHIQMLRKHPI--QKAIHTSSKLLDLNEFFDSPKNFGAEQVRV---- 345
             NFH   FF   ++R +  L    +  Q A++T      + +FFD   NFG  ++R     
Sbjct:     8 NFHSLRFFKSTMWRSLPSLVSSAVRSQNAVNTRFSST-MKQFFDDEANFGKAELRPKHRP 66

Query:   346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDK 398
             GRSW  EELR+KS+SDLHKLWYV LKE+NML TM+     +    PNPER+D+
Sbjct:    67 GRSWTAEELRLKSNSDLHKLWYVCLKERNMLITMKKAHTSRARNMPNPERLDR 119

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	908
pfam06984	87	pfam06984, MRP-L47, Mitochondrial 39-S ribosomal p	1e-23
pfam06984	87	pfam06984, MRP-L47, Mitochondrial 39-S ribosomal p	2e-15
pfam06984	87	pfam06984, MRP-L47, Mitochondrial 39-S ribosomal p	2e-10
pfam11921	122	pfam11921, DUF3439, Domain of unknown function (DU	0.002

>gnl|CDD|219251 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

 Score = 95.2 bits (237), Expect = 1e-23
 Identities = 44/72 (61%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 328 LNEFFDSPKNFG-AEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEK 386
           L EFFD  KN+    +V+VGR+W  EELR KS +DLHKLWYVLLKE+NML TMEHE    
Sbjct: 1   LEEFFDDKKNWPPENEVKVGRAWAAEELRHKSFNDLHKLWYVLLKEKNMLLTMEHELLRN 60

Query: 387 FIVFPNPERIDK 398
             V P+PER+ K
Sbjct: 61  QEVMPSPERLKK 72

This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. Length = 87

>gnl|CDD|219251 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRER 471
           YVLLKE+NML TMEHE      V P+PER+ KV+ SMEN++ V+RER
Sbjct: 41  YVLLKEKNMLLTMEHELLRNQEVMPSPERLKKVKISMENIKTVLRER 87

This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. Length = 87

>gnl|CDD|219251 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 1  MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRER 39
          ML TMEHE      V P+PER+ KV+ SMEN++ V+RER
Sbjct: 49 MLLTMEHELLRNQEVMPSPERLKKVKISMENIKTVLRER 87

This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. Length = 87

>gnl|CDD|221315 pfam11921, DUF3439, Domain of unknown function (DUF3439)

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 23/39 (58%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 650 GKSVFSKAKAAKTTTTTTTTTTTTTTTTNYLLPIT--MS 686
           GK V S      TTTTTTTTTT  TTTT   LP T  MS
Sbjct: 37  GKPVRSIICPTTTTTTTTTTTTMPTTTT---LPTTTKMS 72

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 46 to 94 amino acids in length. This domain is found associated with pfam01462, pfam00560. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	908
KOG3331|consensus	213		100.0
PF06984	87	MRP-L47: Mitochondrial 39-S ribosomal protein L47	100.0
KOG3331|consensus	213		99.8
PF06984	87	MRP-L47: Mitochondrial 39-S ribosomal protein L47	98.62
PRK00306	66	50S ribosomal protein L29; Reviewed	97.25
COG0255	69	RpmC Ribosomal protein L29 [Translation, ribosomal	94.9
cd00427	57	Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 i	94.05
PF00831	58	Ribosomal_L29: Ribosomal L29 protein; InterPro: IP	91.97
CHL00154	67	rpl29 ribosomal protein L29; Validated	91.87
PRK00461	87	rpmC 50S ribosomal protein L29; Reviewed	90.55

>KOG3331|consensus

Probab=100.00  E-value=4.6e-46  Score=364.01  Aligned_cols=181  Identities=35%  Similarity=0.429  Sum_probs=163.7

Q ss_pred             cCCcccccccccCCCCcccccCCCCCCCC----ccccccCCCcchhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhc
Q psy13883        311 RKHPIQKAIHTSSKLLDLNEFFDSPKNFG----AEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEK  386 (908)
Q Consensus       311 ~~~Pt~~~iHTSsp~HGLwEFFDdkknwg----eeevk~GRAWTaeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~  386 (908)
                      |++|+.+++.|++ .|+|||||||+++.+    +..+++||+|+++|||.|||+|||+||||||||||||+||+|++++ 
T Consensus        25 p~p~~~sa~~~~d-t~pL~qFFddk~~~~~~~~~p~~k~GR~W~aeELR~KS~nDLH~LWYvcLkErNmL~T~~~~~k~-  102 (213)
T KOG3331|consen   25 PIPPTTSALRVPD-THPLWQFFDDKKFDRSADEEPPVKHGRAWSAEELRLKSFNDLHKLWYVCLKERNMLATMRHELKN-  102 (213)
T ss_pred             CCccccccCCCCC-CCcHHHHhhhhhccCChhhcCCcccCCccchHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5667776777765 799999999776654    4468999999999999999999999999999999999999999998 


Q ss_pred             cCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHHhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHH
Q psy13883        387 FIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLED  466 (908)
Q Consensus       387 gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKErNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKh  466 (908)
                                                                               +.+.||+|||+.+|++|||||+|
T Consensus       103 ---------------------------------------------------------~~~~~PnpERi~kV~~TM~~I~~  125 (213)
T KOG3331|consen  103 ---------------------------------------------------------IVGSFPNPERIDKVRTTMWRIEH  125 (213)
T ss_pred             ---------------------------------------------------------HHhcCCCHHHHHHHHHHHHHHHH
Confidence                                                                     45678999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcchhccccceeEEeecccCCCCCCCChhhhhcCCcccccchhHHHHHHHHHHHhHHHHH
Q psy13883        467 VIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEY  546 (908)
Q Consensus       467 VLsERe~Ay~~let~~~g~rP~~~~~n~fG~~~~y~~~E~~vP~~lNk~w~k~~~~~~~~~~aV~kFlrL~kEK~lk~~~  546 (908)
                      ||+||+.||..++|+++++++...+.|+||+.+.|.++||+.|+.+|.+|.+..-++ ++...+.+++-..++++.+.++
T Consensus       126 Vl~ER~~Ay~~~~~~e~~~~~~k~~~~~~g~~y~~~a~eh~~pp~~~lk~~~~~~~g-~~~~~~~~~~~knr~~l~~~kr  204 (213)
T KOG3331|consen  126 VLNERNLAYSASRTGEQDERERKKFLDTLGNDYFLNADEHDDPPASMLKRFQLAIFG-ISETIQDNTVDKNRIDLIKFKR  204 (213)
T ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHhccccCCChhhhhhHHhhcccC-cchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999765544 7889999999999999999888


Q ss_pred             HHHhh
Q psy13883        547 AKMKN  551 (908)
Q Consensus       547 ~k~~~  551 (908)
                      +.++.
T Consensus       205 ~ak~~  209 (213)
T KOG3331|consen  205 NAKLQ  209 (213)
T ss_pred             HHHhh
Confidence            76653

>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.9e-36  Score=265.49  Aligned_cols=86  Identities=53%  Similarity=0.843  Sum_probs=80.1

Q ss_pred             ccccCCCCCCC-CccccccCCCcchhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCC
Q psy13883        328 LNEFFDSPKNF-GAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFID  406 (908)
Q Consensus       328 LwEFFDdkknw-geeevk~GRAWTaeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~d  406 (908)
                      |||||+++++| +++++.+||||+++|||+|||+|||+||||||||||||+|++++|++                     
T Consensus         1 L~eFF~~~~~~~~~~~~~~GR~Wt~~ELR~KS~eDLHkLWyv~lKERN~L~T~~~e~~r---------------------   59 (87)
T PF06984_consen    1 LWEFFDDKKNWPPEEEVKHGRAWTAEELRRKSFEDLHKLWYVCLKERNMLLTEEYEARR---------------------   59 (87)
T ss_pred             ChhhcCCCcCCCcccccCCCCcccHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            89999999998 66678999999999999999999999999999999999999999999                     


Q ss_pred             CCCCCCCcccccccchhhHHHHHHhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883        407 PNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRER  471 (908)
Q Consensus       407 p~~~~~p~~~~c~~~~lwYVLLKErNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsER  471 (908)
                                                           +...||+|+|++||++||+||||||+||
T Consensus        60 -------------------------------------~~~~~~~~~r~~kV~~sM~~Ik~Vl~ER   87 (87)
T PF06984_consen   60 -------------------------------------QGEGMPSPERLEKVRKSMARIKHVLTER   87 (87)
T ss_pred             -------------------------------------hcccccchHHHHHHHHHHHHHHHHHhcC
Confidence                                                 2333888999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome

>KOG3331|consensus

Probab=99.80  E-value=4.7e-20  Score=181.99  Aligned_cols=114  Identities=30%  Similarity=0.332  Sum_probs=105.3

Q ss_pred             CccccHHHHHhhhccCCChhhhhHHHHHHHhHHHHHHHHhHHhHhhhccCCCCCCcceecchhhhhhcccccccccchhh
Q psy13883          1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNM   80 (908)
Q Consensus         1 MLLTMEqEakrq~~~mPsPERLdKVeeSM~nLEtVVrERNdA~~lLETGe~~erPg~w~~n~fG~v~~~~~~~~~~~~~~   80 (908)
                      ||+||+||++++...|||||||+||.+||.+||.||+|||+||..++||++++++.+-..|.|                 
T Consensus        92 mL~T~~~~~k~~~~~~PnpERi~kV~~TM~~I~~Vl~ER~~Ay~~~~~~e~~~~~~k~~~~~~-----------------  154 (213)
T KOG3331|consen   92 MLATMRHELKNIVGSFPNPERIDKVRTTMWRIEHVLNERNLAYSASRTGEQDERERKKFLDTL-----------------  154 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh-----------------
Confidence            899999999999999999999999999999999999999999999999999999999988865                 


Q ss_pred             HHHHHHHhhhcccccCCCCccccCCCccccchhhhhhhhHHHhhhccccchhhcccccCCchhhhHHHHhcCCCcCchhH
Q psy13883         81 VFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTL  160 (908)
Q Consensus        81 ~f~~~~~~~~~~~~r~~~pk~~~~~~~t~f~~yf~~~~~~~~~~~~~gl~~~y~~~ey~~Pk~~N~~w~~~~~~~~~~~~  160 (908)
                                                                     |+.+.|...||+.|..++.+|.+.. .++.+..
T Consensus       155 -----------------------------------------------g~~y~~~a~eh~~pp~~~lk~~~~~-~~g~~~~  186 (213)
T KOG3331|consen  155 -----------------------------------------------GNDYFLNADEHDDPPASMLKRFQLA-IFGISET  186 (213)
T ss_pred             -----------------------------------------------hHHHHHhccccCCChhhhhhHHhhc-ccCcchH
Confidence                                                           5566799999999999999999965 4666777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy13883        161 AVKKFLVLLKEKLLKKEYA  179 (908)
Q Consensus       161 av~kFl~l~~EKl~~~~~~  179 (908)
                      ++.+++..+++++++.+++
T Consensus       187 ~~~~~~~knr~~l~~~kr~  205 (213)
T KOG3331|consen  187 IQDNTVDKNRIDLIKFKRN  205 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999843

>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.62  E-value=1.6e-08  Score=90.01  Aligned_cols=39  Identities=41%  Similarity=0.615  Sum_probs=38.2

Q ss_pred             CccccHHHHHhhhccCCChhhhhHHHHHHHhHHHHHHHH
Q psy13883          1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRER   39 (908)
Q Consensus         1 MLLTMEqEakrq~~~mPsPERLdKVeeSM~nLEtVVrER   39 (908)
                      ||+|+|+|++++...||+|||++||..||.||.+||.||
T Consensus        49 ~L~T~~~e~~r~~~~~~~~~r~~kV~~sM~~Ik~Vl~ER   87 (87)
T PF06984_consen   49 MLLTEEYEARRQGEGMPSPERLEKVRKSMARIKHVLTER   87 (87)
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhcC
Confidence            789999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome

>PRK00306 50S ribosomal protein L29; Reviewed

Probab=97.25  E-value=0.0011  Score=55.98  Aligned_cols=61  Identities=26%  Similarity=0.370  Sum_probs=49.8

Q ss_pred             hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883        351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE  430 (908)
Q Consensus       351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE  430 (908)
                      +.|||.+|.+||.+.+..+.+|   |+..+-..                                               
T Consensus         3 ~~elr~ls~~eL~~~l~~lkke---L~~lR~~~-----------------------------------------------   32 (66)
T PRK00306          3 AKELRELSVEELNEKLLELKKE---LFNLRFQK-----------------------------------------------   32 (66)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHH---HHHHHHHH-----------------------------------------------
Confidence            6799999999999999999888   44433221                                               


Q ss_pred             hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                                   ..+...+|.++..+|++++||++|++||..|
T Consensus        33 -------------~~~~~~n~~~i~~~rk~IARi~Tvl~er~~~   63 (66)
T PRK00306         33 -------------ATGQLENTHRLREVRRDIARIKTVLRERELG   63 (66)
T ss_pred             -------------HhCCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence                         2234678999999999999999999999876

>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]

Probab=94.90  E-value=0.098  Score=45.83  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             hcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13883        444 KFIVFPNPERIDKVQESMENLEDVIRERNVAY  475 (908)
Q Consensus       444 q~~~mPnPERleKVRkSM~RIKhVLsERe~Ay  475 (908)
                      ..+..++|.|++.||++.+||++|++|+..+.
T Consensus        35 a~g~l~n~~~ir~vRr~IARi~Tv~~E~~~~~   66 (69)
T COG0255          35 ATGQLENPHRIREVRRDIARILTVLREKELEA   66 (69)
T ss_pred             HhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44566799999999999999999999998764

>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP

Probab=94.05  E-value=0.096  Score=43.29  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.3

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883        446 IVFPNPERIDKVQESMENLEDVIRER  471 (908)
Q Consensus       446 ~~mPnPERleKVRkSM~RIKhVLsER  471 (908)
                      +...+|.++..+|++++||+.|++||
T Consensus        32 ~~~~~~~~~~~~Rr~IARi~Til~er   57 (57)
T cd00427          32 GQLENPHRIRKVRKDIARIKTVLNEK   57 (57)
T ss_pred             CCCcCcHHHHHHHHHHHHHHHHHHcC
Confidence            34678999999999999999999986

L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat

>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.97  E-value=0.25  Score=41.11  Aligned_cols=28  Identities=29%  Similarity=0.498  Sum_probs=25.2

Q ss_pred             hcccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883        444 KFIVFPNPERIDKVQESMENLEDVIRER  471 (908)
Q Consensus       444 q~~~mPnPERleKVRkSM~RIKhVLsER  471 (908)
                      ..+...+|.++..+|++.+||+.|++||
T Consensus        31 ~~~~l~n~~~ir~~Rr~IARi~Tvl~er   58 (58)
T PF00831_consen   31 ATGQLENPHRIREIRRDIARILTVLRER   58 (58)
T ss_dssp             HHSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHhcC
Confidence            3466689999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....

>CHL00154 rpl29 ribosomal protein L29; Validated

Probab=91.87  E-value=0.36  Score=41.88  Aligned_cols=31  Identities=10%  Similarity=0.065  Sum_probs=27.8

Q ss_pred             hhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883        443 EKFIVFPNPERIDKVQESMENLEDVIRERNV  473 (908)
Q Consensus       443 aq~~~mPnPERleKVRkSM~RIKhVLsERe~  473 (908)
                      ...+...+|.+++.||+..+||+.|++||..
T Consensus        35 ~atgql~n~~~ir~~RrdIARikTil~ek~~   65 (67)
T CHL00154         35 KATRQNFKPHLFKHKKHRLAQLLTLLSSRLK   65 (67)
T ss_pred             HHhCcccChHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567889999999999999999999999974

>PRK00461 rpmC 50S ribosomal protein L29; Reviewed

Probab=90.55  E-value=0.56  Score=42.66  Aligned_cols=32  Identities=9%  Similarity=0.246  Sum_probs=27.8

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13883        445 FIVFPNPERIDKVQESMENLEDVIRERNVAYF  476 (908)
Q Consensus       445 ~~~mPnPERleKVRkSM~RIKhVLsERe~Ay~  476 (908)
                      .+...+|.++..+|+..+||+.|++||..+..
T Consensus        33 tgql~n~~~ir~iRR~IARilTvl~Ek~~~~~   64 (87)
T PRK00461         33 TGSLDQTHKIKEIRKDIARILTILNERELEEK   64 (87)
T ss_pred             hCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34568899999999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	908
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 5e-13
 Identities = 95/725 (13%), Positives = 201/725 (27%), Gaps = 224/725 (30%)

Query: 224 EVAQIFATYKDVDVEAVQEKY-PDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDN 282
           E  +    YKD+ +   ++ +  + D ++V+            +I    +         +
Sbjct: 10  ETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDM--------PKSILSKEE-IDHIIMSKD 59

Query: 283 PENEATF-------SHPNINFHF--------FPFLLFRHIQMLRKHPIQKAIHTSSKLLD 327
             +               +   F        + FL+      ++    Q ++ T   +  
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQPSMMTRMYIEQ 115

Query: 328 LNEFFDSPKNFGAEQVRVGRSWRKE---ELRVKSSSDLHKLWYVLLKEQNML---KT-ME 380
            +  ++  + F    V      R +   +LR ++  +L     VL+    +L   KT + 
Sbjct: 116 RDRLYNDNQVFAKYNV-----SRLQPYLKLR-QALLELRPAKNVLI--DGVLGSGKTWVA 167

Query: 381 HECKEKFIVFPNPERIDKNFFPNF-IDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEH 439
            +      V  + +   K  F  F +        N   C+  S   VL   Q +L  ++ 
Sbjct: 168 LD------VCLSYKVQCKMDFKIFWL--------NLKNCN--SPETVLEMLQKLLYQIDP 211

Query: 440 E-CKEKFIVFPNPERIDKVQESMEN-------------LEDVIRERNVAYFQLE-----T 480
                         RI  +Q  +               L +V   +    F L      T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 481 T------------HTGERPAELIDNAFGLKEV------YTKSEYDVPKELNKEWQKNNPV 522
           T             T     +         EV      Y       P++L +E    NP 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNP- 327

Query: 523 IDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKY------- 575
                  +      +++ L   +  K  N +K    I ++   ++    ++ +       
Sbjct: 328 -----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 576 PDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAI 635
           P   +  + +  +   V+ ++  ++ +++ K       P       P+ Y  L       
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 636 LVM--KVLQSVQIFKIGKSVFSKAKAAKTTTTTTTTTTTTTTTTNYLLPITMSRYDSCPR 693
             +   ++    I K                         T  ++ L+P  + +Y     
Sbjct: 443 YALHRSIVDHYNIPK-------------------------TFDSDDLIPPYLDQY----- 472

Query: 694 YLNMAIICTYV---LVEGRRLE-WGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVA 749
                   +++   L      E   +F+ V   FR L             E  IR  + A
Sbjct: 473 ------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-------------EQKIRHDSTA 513

Query: 750 YFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPV 809
           +       +G     L       Y    ++                          N+P 
Sbjct: 514 W-----NASGSILNTLQQ--LKFYKP--YIC------------------------DNDPK 540

Query: 810 IDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVY 869
            +    A+  FL  ++E L+  +Y                   T+ L+  L         
Sbjct: 541 YERLVNAILDFLPKIEENLICSKY-------------------TDLLRIALMAED--EAI 579

Query: 870 YYDSE 874
           + ++ 
Sbjct: 580 FEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-09
 Identities = 94/655 (14%), Positives = 187/655 (28%), Gaps = 211/655 (32%)

Query: 8   ECKEKFIVFPNPER-----IDKVQESMEN-----LEDVIRERNVAY-FQLETTHTGERPA 56
           E     +   +           +    E      +E+V+R     Y F +    T +R  
Sbjct: 50  EIDHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQP 105

Query: 57  ELIDNAFVCILKDKVF----LFTPVLNMVFACLIRKVKNTIQR-SKEPKV---------- 101
            ++   ++   +D+++    +F    N+       K++  +        V          
Sbjct: 106 SMMTRMYIE-QRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 102 ---------DYKA-PMTNFHYY---FKRC-----LLIFCLYLCSGLKEVYT-KSEYDVPK 142
                     YK     +F  +    K C     +L     L   +   +T +S++    
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 143 ELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKM--------KSWVFFKVF---- 190
           +L     +                  L+  L  K Y            +  +   F    
Sbjct: 224 KLRIHSIQAE----------------LRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSC 266

Query: 191 -TTMTLRDTNHLQRCLAEPYGIGALNNIYKN-EEKEVAQIFATYKDVDVEAVQEKYPDVD 248
              +T R         A      +L++        EV  +   Y D   +      P   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLP--- 319

Query: 249 VEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQ 308
             EV   +        ++I            RD     AT+ +            ++H+ 
Sbjct: 320 -REVLTTNPR-----RLSII-AESI------RDGL---ATWDN------------WKHVN 351

Query: 309 MLRKHPIQKAIHTSSKLLDLNEF---FDS----PKNFGAEQVRVGRSWRK---------- 351
                 +   I +S  +L+  E+   FD     P +     + +   W            
Sbjct: 352 ---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 352 EELRVKS---------SSDLHKLWYVLLKEQNMLKTMEHECKEKFIV--FPNPERIDKN- 399
            +L   S         +  +  + Y+ LK +   +   H    + IV  +  P+  D + 
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALH----RSIVDHYNIPKTFDSDD 463

Query: 400 FFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNM--LKTMEHECKEKFIVFPNPERIDKV 457
             P ++D        +       Y ++         LK +EH   E+  +F        V
Sbjct: 464 LIPPYLD-------QYF------YSHI------GHHLKNIEHP--ERMTLFR------MV 496

Query: 458 QESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQ 517
                 LE  IR  + A+              +++    LK  Y    Y           
Sbjct: 497 FLDFRFLEQKIRHDSTAW---------NASGSILNTLQQLK-FYKP--Y---------IC 535

Query: 518 KNNPVIDNRTLAVKKFLVLLKEKLLKKEYAK-----MKNEEKEVAQIFATYKDVD 567
            N+P  +    A+  FL  ++E L+  +Y       +  E++ + +    +K V 
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE--EAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	908
2zjr_V	67	50S ribosomal protein L29; ribosome, large ribosom	97.42
1r73_A	66	TM1492, 50S ribosomal protein L29; ribosome, struc	97.36
1vq8_V	71	50S ribosomal protein L29P; ribosome 50S, protein-	97.3
3v2d_2	72	50S ribosomal protein L29; ribosome associated inh	96.98
3r8s_Y	63	50S ribosomal protein L29; protein biosynthesis, R	96.98
3j21_W	72	50S ribosomal protein L29P; archaea, archaeal, KIN	95.39
3jyw_X	86	60S ribosomal protein L35; eukaryotic ribosome, RA	93.34
3iz5_c	124	60S ribosomal protein L35 (L29P); eukaryotic ribos	92.34
2zkr_v	123	60S ribosomal protein L35; protein-RNA complex, 60	92.08
3bbo_Z	173	Ribosomal protein L29; large ribosomal subunit, sp	91.95
4a17_U	124	RPL35, 60S ribosomal protein L21; eukaryotic ribos	91.55

>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y

Probab=97.42  E-value=0.00017  Score=60.33  Aligned_cols=61  Identities=20%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883        351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE  430 (908)
Q Consensus       351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE  430 (908)
                      +.|||.+|.+||++.+.-+.+|   |...+-.                                                
T Consensus         3 ~~elr~~s~~EL~~~l~elk~E---Lf~LR~q------------------------------------------------   31 (67)
T 2zjr_V            3 PSEMRNLQATDFAKEIDARKKE---LMELRFQ------------------------------------------------   31 (67)
T ss_dssp             STTTTTSCHHHHHHHHHTHHHH---HHHHHHH------------------------------------------------
T ss_pred             HHHHHhCCHHHHHHHHHHHHHH---HHHHHHH------------------------------------------------
Confidence            5799999999999999888887   3332211                                                


Q ss_pred             hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                                  ...+...+|.|++.||++++||++|++||..+
T Consensus        32 ------------~atgql~n~~~ir~vRr~IARi~Tvl~er~~~   63 (67)
T 2zjr_V           32 ------------AAAGQLAQPHRVRQLRREVAQLNTVKAELARK   63 (67)
T ss_dssp             ------------HHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ------------HHhCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        12356689999999999999999999999765

>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1

Probab=97.36  E-value=0.00039  Score=58.03  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=48.2

Q ss_pred             hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883        351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE  430 (908)
Q Consensus       351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE  430 (908)
                      +.|||.+|.+||++.+.-+.+|   |...+-.                                                
T Consensus         3 ~~elr~~s~~EL~~~l~elk~E---Lf~LR~q------------------------------------------------   31 (66)
T 1r73_A            3 ASELRNYTDEELKNLLEEKKRQ---LMELRFQ------------------------------------------------   31 (66)
T ss_dssp             CSHHHHSCHHHHHHHHHHHHHH---HHHHHHH------------------------------------------------
T ss_pred             hHHHHhCCHHHHHHHHHHHHHH---HHHHHHH------------------------------------------------
Confidence            5799999999999999888887   3322211                                                


Q ss_pred             hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883        431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNV  473 (908)
Q Consensus       431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~  473 (908)
                                  ...+...+|.|+..||++++||++|++||+.
T Consensus        32 ------------~atgql~n~~~ir~vRr~IARi~Tvl~er~~   62 (66)
T 1r73_A           32 ------------LAMGQLKNTSLIKLTKRDIARIKTILREREL   62 (66)
T ss_dssp             ------------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------HHccCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence                        1235668999999999999999999999985

>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...

Probab=97.30  E-value=0.00039  Score=58.83  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             cchhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHH
Q psy13883        349 WRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLL  428 (908)
Q Consensus       349 WTaeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLL  428 (908)
                      +.+.|||.+|.+||++.+.-+.+|   |...+-.                                              
T Consensus         4 mk~~elr~~s~~EL~~~l~elk~E---Lf~LR~q----------------------------------------------   34 (71)
T 1vq8_V            4 LHVQEIRDMTPAEREAELDDLKTE---LLNARAV----------------------------------------------   34 (71)
T ss_dssp             SCHHHHHHSCHHHHHHHHHHHHHH---HHHHHHH----------------------------------------------
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHH---HHHHHHH----------------------------------------------
Confidence            678899999999999998888777   2221111                                              


Q ss_pred             HHhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        429 KEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       429 KErNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                                   .+-++..++|.|++.||++++||++|++||..+
T Consensus        35 -------------~atggql~n~~~ir~vRr~IARi~Tvl~er~~~   67 (71)
T 1vq8_V           35 -------------QAAGGAPENPGRIKELRKAIARIKTIQGEEGDL   67 (71)
T ss_dssp             -------------HHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             -------------HHhcCCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         112356789999999999999999999999865

>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...

Probab=96.98  E-value=0.00063  Score=57.77  Aligned_cols=29  Identities=14%  Similarity=0.258  Sum_probs=25.9

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        446 IVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       446 ~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                      +...+|.|++.||++.+||++|++||+.+
T Consensus        42 gql~n~~~ir~vRr~IARi~Tvl~er~~~   70 (72)
T 3v2d_2           42 GQLSQNHKIRDLKRQIARLLTVLNEKRRQ   70 (72)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44588999999999999999999999864

>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...

Probab=96.98  E-value=0.00025  Score=58.68  Aligned_cols=28  Identities=7%  Similarity=0.219  Sum_probs=25.1

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883        446 IVFPNPERIDKVQESMENLEDVIRERNV  473 (908)
Q Consensus       446 ~~mPnPERleKVRkSM~RIKhVLsERe~  473 (908)
                      +...+|.|++.||++++||++|++||..
T Consensus        35 gql~n~~~ir~vRr~IARi~Tvl~er~~   62 (63)
T 3r8s_Y           35 GQLQQSHLLKQVRRDVARVKTLLNEKAG   62 (63)
T ss_dssp             TCCSCGGGTHHHHHHHHHHHHTTTSSTT
T ss_pred             CCCcCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            4568899999999999999999999864

>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=95.39  E-value=0.031  Score=47.45  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             ccc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13883        445 FIV-FPNPERIDKVQESMENLEDVIRERNVAYFQL  478 (908)
Q Consensus       445 ~~~-mPnPERleKVRkSM~RIKhVLsERe~Ay~~l  478 (908)
                      .+. ..+|.|+..||++.+||++|++||+.+....
T Consensus        34 tgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~~~   68 (72)
T 3j21_W           34 MGTSLENPMVIRNLRRDIARLLTIKKEKLREREKG   68 (72)
T ss_dssp             HCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445 7899999999999999999999999887654

>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=93.34  E-value=0.024  Score=50.09  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        451 PERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       451 PERleKVRkSM~RIKhVLsERe~A  474 (908)
                      |.|++.||+++.||++||+||+.+
T Consensus        40 p~rIr~vRRdIARikTvl~er~~~   63 (86)
T 3jyw_X           40 LPKIKTVRKSIACVLTVINEQQAA   63 (86)
T ss_dssp             HHHHTCCSTTTHHHHTTTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999863

>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=92.08  E-value=0.28  Score=45.69  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=23.8

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        447 VFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       447 ~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                      ...+|.|+..||++.+||+.|++||+.+
T Consensus        40 ~len~~rir~vRrdIARI~Tvl~er~~~   67 (123)
T 2zkr_v           40 AASKLSKIRVVRKSIARVLTVINQTQKE   67 (123)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999864

>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=91.95  E-value=0.17  Score=49.57  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=25.7

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        446 IVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       446 ~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                      +...+|.|++.||+...||+.||+||+.+
T Consensus        99 GQLeNpsrIR~VRRdIARIkTVLrErel~  127 (173)
T 3bbo_Z           99 RNEFKSSDFRRMKKQVARMLTVKREREIK  127 (173)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44789999999999999999999999774

>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U

Probab=91.55  E-value=0.22  Score=46.46  Aligned_cols=30  Identities=17%  Similarity=0.124  Sum_probs=26.4

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        445 FIVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       445 ~~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                      ++...+|.++..||++.+||+.|++||+.+
T Consensus        39 ggqlen~~rIr~vRRdIARi~Tvl~er~~~   68 (124)
T 4a17_U           39 GGTANKLGRIGIVRKAIAKYLTIINEKRRQ   68 (124)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            336788999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	908
d2zjrv1	66	Ribosomal protein L29 (L29p) {Deinococcus radiodur	97.14
d1r73a_	66	Ribosomal protein L29 (L29p) {Thermotoga maritima	97.11
d2gycw1	60	Ribosomal protein L29 (L29p) {Escherichia coli [Ta	96.4
d1vqov1	65	Ribosomal protein L29 (L29p) {Archaeon Haloarcula	93.82

>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.14  E-value=0.00025  Score=57.16  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=27.5

Q ss_pred             hcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        444 KFIVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       444 q~~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                      ..+..++|.++.+||++++||++|++||..+
T Consensus        33 ~tgql~n~~~ik~~Rk~IARi~Tvl~er~~~   63 (66)
T d2zjrv1          33 AAGQLAQPHRVRQLRREVAQLNTVKAELARK   63 (66)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3467889999999999999999999999764

>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.0005  Score=55.33  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=49.3

Q ss_pred             hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883        351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE  430 (908)
Q Consensus       351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE  430 (908)
                      +.|||.+|.+||.+.+..+.+|   |+..+-                                                 
T Consensus         3 ~~elr~ls~~eL~~~l~~l~~e---l~~LRf-------------------------------------------------   30 (66)
T d1r73a_           3 ASELRNYTDEELKNLLEEKKRQ---LMELRF-------------------------------------------------   30 (66)
T ss_dssp             CSHHHHSCHHHHHHHHHHHHHH---HHHHHH-------------------------------------------------
T ss_pred             HHHHHhCCHHHHHHHHHHHHHH---HHHHHH-------------------------------------------------
Confidence            5799999999999999888877   322221                                                 


Q ss_pred             hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883        431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA  474 (908)
Q Consensus       431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A  474 (908)
                                 +...+..++|.++.++|++.+||++|++||+.+
T Consensus        31 -----------q~~~gql~~~~~i~~~Rk~IARi~Tvl~er~~~   63 (66)
T d1r73a_          31 -----------QLAMGQLKNTSLIKLTKRDIARIKTILRERELG   63 (66)
T ss_dssp             -----------HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------HHHHCCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence                       113467789999999999999999999999874

>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0026  Score=50.13  Aligned_cols=28  Identities=7%  Similarity=0.223  Sum_probs=25.4

Q ss_pred             hcccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883        444 KFIVFPNPERIDKVQESMENLEDVIRER  471 (908)
Q Consensus       444 q~~~mPnPERleKVRkSM~RIKhVLsER  471 (908)
                      ..+..++|.++..+|++.+||++|++||
T Consensus        33 ~~gql~~~~~i~~~Rk~IARi~Tvl~ek   60 (60)
T d2gycw1          33 ASGQLQQSHLLKQVRRDVARVKTLLNEK   60 (60)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            4567889999999999999999999996

>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.82  E-value=0.077  Score=42.21  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=26.7

Q ss_pred             hcccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy13883        444 KFIVFPNPERIDKVQESMENLEDVIRERN  472 (908)
Q Consensus       444 q~~~mPnPERleKVRkSM~RIKhVLsERe  472 (908)
                      ..+..++|.++..||++.+||+.|++||.
T Consensus        36 ~~gql~~~~~ik~~Rk~IARi~Tvl~ek~   64 (65)
T d1vqov1          36 AGGAPENPGRIKELRKAIARIKTIQGEEG   64 (65)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            56788999999999999999999999985