Psyllid ID: psy13887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MFPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAWP
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccEEEEEccccccEEEcccccEEEEEccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEcccccEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MFPSPQVHEYLRSKLCSlyendcifdkfevcwsgtdsaimtgSYNNFFRMFDRINKRDATLEAAREIakpktllrprkvctggkrkkdeiSVDCLDFNkkilhtawp
Flexible Loop (DISEMBL)
mfpspqvhEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAreiakpktllrprkvctggkrkkdeisvdcldfnkkilhtawp
Low Complexity Region (SEG)
MFPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAWP
Disordered region (IsUnstruct)
********EYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATL**********************************************
Disordered Region (DISOPRED)
*FPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDA************************************DFNKKILHTAWP
Disordered Region (DISEMBL)
MFPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAWP
Disordered Region (DISPRO)
MFPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR***************************DCLDFNKKILHTAWP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAWP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q6NY64	447	Serine/threonine-protein	yes	N/A	0.943	0.225	0.851	5e-48
P36872	499	Protein phosphatase PP2A	yes	N/A	0.934	0.200	0.85	8e-48
Q925E7	453	Serine/threonine-protein	yes	N/A	0.943	0.222	0.851	1e-47
Q6DIY3	447	Serine/threonine-protein	yes	N/A	0.943	0.225	0.841	1e-47
Q66LE6	453	Serine/threonine-protein	yes	N/A	0.943	0.222	0.841	2e-47
Q5ZIY5	451	Serine/threonine-protein	yes	N/A	0.943	0.223	0.831	4e-47
Q7ZX64	447	Serine/threonine-protein	N/A	N/A	0.943	0.225	0.831	8e-47
P56932	453	Serine/threonine-protein	yes	N/A	0.943	0.222	0.831	1e-46
Q29090	426	Serine/threonine-protein	yes	N/A	0.943	0.237	0.831	1e-46
P36876	447	Serine/threonine-protein	no	N/A	0.943	0.225	0.831	2e-46

>sp|Q6NY64|2ABD_DANRE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Danio rerio GN=ppp2r2d PE=2 SV=1

 Score =  189 bits (480), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 94/101 (93%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDITLEASR 383

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+ +L+PRKVCTGGKRKKDEISVD LDFNKKILHTAW
Sbjct: 384 ESSKPRAMLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAW 424

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Danio rerio (taxid: 7955)

>sp|P36872|2ABA_DROME Protein phosphatase PP2A 55 kDa regulatory subunit OS=Drosophila melanogaster GN=tws PE=2 SV=1

 Score =  188 bits (478), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLR+KLCSLYENDCIFDKFE CW+G DS+IMTGSYNNFFR+FDR +K+D TLEA+R+
Sbjct: 378 VHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRD 437

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           I KPKT+L+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 438 IIKPKTVLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 477

Could perform a substrate recognition function or could be responsible for targeting the enzyme complex to the appropriate subcellular compartment.

Drosophila melanogaster (taxid: 7227)

>sp|Q925E7|2ABD_MOUSE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Mus musculus GN=Ppp2r2d PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 93/101 (92%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 330 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDVTLEASR 389

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+  L+PRKVCTGGKRKKDEISVD LDFNKKILHTAW
Sbjct: 390 ENSKPRASLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAW 430

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Mus musculus (taxid: 10090)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 94/101 (93%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDITLEASR 383

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+ +L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct: 384 ESSKPRAILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 424

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q66LE6|2ABD_HUMAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 93/101 (92%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 330 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRDTRRDVTLEASR 389

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+  L+PRKVCTGGKR+KDEISVD LDFNKKILHTAW
Sbjct: 390 ESSKPRASLKPRKVCTGGKRRKDEISVDSLDFNKKILHTAW 430

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Homo sapiens (taxid: 9606)

>sp|Q5ZIY5|2ABD_CHICK Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+D AIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 328 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFDRNTRRDITLEASR 387

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+ +L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct: 388 ESSKPRAILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 428

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Gallus gallus (taxid: 9031)

>sp|Q7ZX64|2ABD_XENLA Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus laevis GN=ppp2r2d PE=1 SV=1

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS+IMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSSIMTGSYNNFFRMFDRNTRRDITLEASR 383

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+  L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct: 384 ESSKPRATLKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 424

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus laevis (taxid: 8355)

>sp|P56932|2ABD_RAT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Rattus norvegicus GN=Ppp2r2d PE=2 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 92/101 (91%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
            VHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct: 330 HVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDVTLEASR 389

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E +KP+  L+PRKVC+GGKRKKDEISVD LDFNKKILHTAW
Sbjct: 390 ENSKPRASLKPRKVCSGGKRKKDEISVDSLDFNKKILHTAW 430

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q29090|2ABA_PIG Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (Fragment) OS=Sus scrofa GN=PPP2R2A PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 91/101 (90%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS +MTGSYNNFFRMFDR  KRD TLEA+R
Sbjct: 303 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 362

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E  KP+T+L+PRKVC  GKRKKDEISVD LDFNKKILHTAW
Sbjct: 363 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW 403

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Sus scrofa (taxid: 9823)

>sp|P36876|2ABA_RAT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Rattus norvegicus GN=Ppp2r2a PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 91/101 (90%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS +MTGSYNNFFRMFDR  KRD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 383

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E  KP+T+L+PRKVC  GKRKKDEISVD LDFNKKILHTAW
Sbjct: 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW 424

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
328783306	469	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.213	0.92	4e-49
383858543	469	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.213	0.92	4e-49
340725467	469	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.213	0.92	4e-49
383858541	467	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.214	0.92	5e-49
380024701	479	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.208	0.92	5e-49
307186493	448	Protein phosphatase PP2A 55 kDa regulato	0.934	0.223	0.92	6e-49
332023070	448	Protein phosphatase PP2A 55 kDa regulato	0.934	0.223	0.92	7e-49
345490872	494	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.202	0.9	1e-48
345490868	448	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.223	0.9	2e-48
156538759	501	PREDICTED: protein phosphatase PP2A 55 k	0.934	0.199	0.9	2e-48

>gi|328783306|ref|XP_394082.3| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit isoform 1 [Apis mellifera]

 Score =  198 bits (503), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 348 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 407

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 408 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 447

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858543|ref|XP_003704760.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Megachile rotundata]

 Score =  198 bits (503), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 348 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 407

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 408 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 447

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725467|ref|XP_003401091.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Bombus terrestris] gi|340725469|ref|XP_003401092.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Bombus terrestris] gi|350415112|ref|XP_003490537.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Bombus impatiens] gi|350415115|ref|XP_003490538.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Bombus impatiens]

 Score =  198 bits (503), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 348 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 407

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 408 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 447

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858541|ref|XP_003704759.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Megachile rotundata]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 346 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 405

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 406 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 445

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024701|ref|XP_003696131.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like [Apis florea]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 358 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 417

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 418 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 457

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186493|gb|EFN72063.1| Protein phosphatase PP2A 55 kDa regulatory subunit [Camponotus floridanus]

 Score =  197 bits (501), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 327 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 386

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 387 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 426

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023070|gb|EGI63335.1| Protein phosphatase PP2A 55 kDa regulatory subunit [Acromyrmex echinatior]

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEAAR+
Sbjct: 327 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRTTKRDLTLEAARD 386

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           IAKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 387 IAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 426

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490872|ref|XP_003426484.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 4 [Nasonia vitripennis]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEA+R+
Sbjct: 373 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRSTKRDVTLEASRD 432

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           +AKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 433 VAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 472

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490868|ref|XP_003426482.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 2 [Nasonia vitripennis]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEA+R+
Sbjct: 327 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRSTKRDVTLEASRD 386

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           +AKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 387 VAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 426

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538759|ref|XP_001607887.1| PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit-like isoform 1 [Nasonia vitripennis]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 95/100 (95%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
           VHEYLRSKLCSLYENDCIFDKFE CWSG DSAIMTGSYNNFFR+FDR  KRD TLEA+R+
Sbjct: 380 VHEYLRSKLCSLYENDCIFDKFECCWSGNDSAIMTGSYNNFFRVFDRSTKRDVTLEASRD 439

Query: 67  IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           +AKPKTLL+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct: 440 VAKPKTLLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 479

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
FB|FBgn0004889	499	tws "twins" [Drosophila melano	0.934	0.200	0.85	7.9e-46
ZFIN|ZDB-GENE-040426-2086	447	ppp2r2d "protein phosphatase 2	0.943	0.225	0.851	1.6e-45
ZFIN|ZDB-GENE-070424-128	448	si:ch211-136d9.1 "si:ch211-136	0.943	0.225	0.851	1.6e-45
UNIPROTKB|J9P487	422	PPP2R2D "Uncharacterized prote	0.943	0.239	0.861	2.1e-45
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.943	0.225	0.841	3.4e-45
MGI|MGI:1289252	453	Ppp2r2d "protein phosphatase 2	0.943	0.222	0.851	4.4e-45
UNIPROTKB|Q66LE6	453	PPP2R2D "Serine/threonine-prot	0.943	0.222	0.841	7.1e-45
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.943	0.224	0.831	9.1e-45
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.943	0.223	0.831	9.1e-45
UNIPROTKB|Q5ZIY5	451	PPP2R2D "Serine/threonine-prot	0.943	0.223	0.831	9.1e-45

FB|FBgn0004889 tws "twins" [Drosophila melanogaster (taxid:7227)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 85/100 (85%), Positives = 95/100 (95%)

Query:     7 VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66
             VHEYLR+KLCSLYENDCIFDKFE CW+G DS+IMTGSYNNFFR+FDR +K+D TLEA+R+
Sbjct:   378 VHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRD 437

Query:    67 IAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             I KPKT+L+PRKVCTGGKRKKDEISVDCLDFNKKILHTAW
Sbjct:   438 IIKPKTVLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 477

GO:0007088 "regulation of mitosis" evidence=IMP

GO:0000090 "mitotic anaphase" evidence=IMP

GO:0007447 "imaginal disc pattern formation" evidence=IMP

GO:0006470 "protein dephosphorylation" evidence=ISS;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS;NAS

GO:0007423 "sensory organ development" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=NAS;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0016055 "Wnt receptor signaling pathway" evidence=IGI;IMP

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0051297 "centrosome organization" evidence=IMP

GO:0045201 "maintenance of neuroblast polarity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007406 "negative regulation of neuroblast proliferation" evidence=IMP

ZFIN|ZDB-GENE-040426-2086 ppp2r2d "protein phosphatase 2, regulatory subunit B, delta" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 86/101 (85%), Positives = 94/101 (93%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDITLEASR 383

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+ +L+PRKVCTGGKRKKDEISVD LDFNKKILHTAW
Sbjct:   384 ESSKPRAMLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAW 424

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0007067 "mitosis" evidence=IEA;ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

ZFIN|ZDB-GENE-070424-128 si:ch211-136d9.1 "si:ch211-136d9.1" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 86/101 (85%), Positives = 94/101 (93%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   325 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDITLEASR 384

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+ +L+PRKVCTGGKRKKDEISVD LDFNKKILHTAW
Sbjct:   385 ESSKPRAMLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAW 425

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|J9P487 PPP2R2D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 87/101 (86%), Positives = 93/101 (92%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CWSG+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   299 QVHEYLRSKLCSLYENDCIFDKFECCWSGSDSAIMTGSYNNFFRMFDRNTRRDVTLEASR 358

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+  L+PRKVCTGGKRKKDEISVD LDFNKKILHTAW
Sbjct:   359 ENSKPRASLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAW 399

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 85/101 (84%), Positives = 94/101 (93%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDITLEASR 383

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+ +L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct:   384 ESSKPRAILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 424

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

MGI|MGI:1289252 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta isoform" [Mus musculus (taxid:10090)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 86/101 (85%), Positives = 93/101 (92%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   330 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDVTLEASR 389

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+  L+PRKVCTGGKRKKDEISVD LDFNKKILHTAW
Sbjct:   390 ENSKPRASLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAW 430

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q66LE6 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Homo sapiens (taxid:9606)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 85/101 (84%), Positives = 93/101 (92%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+DSAIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   330 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRDTRRDVTLEASR 389

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+  L+PRKVCTGGKR+KDEISVD LDFNKKILHTAW
Sbjct:   390 ESSKPRASLKPRKVCTGGKRRKDEISVDSLDFNKKILHTAW 430

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+D AIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   327 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFDRNTRRDITLEASR 386

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+ +L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct:   387 ESSKPRAILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 427

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+D AIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   328 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFDRNTRRDITLEASR 387

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+ +L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct:   388 ESSKPRAILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 428

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query:     6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
             QVHEYLRSKLCSLYENDCIFDKFE CW+G+D AIMTGSYNNFFRMFDR  +RD TLEA+R
Sbjct:   328 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFDRNTRRDITLEASR 387

Query:    66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
             E +KP+ +L+PRKVCTGGKRKKDEI+VD LDFNKKILHTAW
Sbjct:   388 ESSKPRAILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAW 428

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DIY3	2ABD_XENTR	No assigned EC number	0.8415	0.9439	0.2259	yes	N/A
P36872	2ABA_DROME	No assigned EC number	0.85	0.9345	0.2004	yes	N/A
Q29090	2ABA_PIG	No assigned EC number	0.8316	0.9439	0.2370	yes	N/A
Q66LE6	2ABD_HUMAN	No assigned EC number	0.8415	0.9439	0.2229	yes	N/A
P56932	2ABD_RAT	No assigned EC number	0.8316	0.9439	0.2229	yes	N/A
P63150	2ABA_RABIT	No assigned EC number	0.8316	0.9439	0.2259	yes	N/A
Q5ZIY5	2ABD_CHICK	No assigned EC number	0.8316	0.9439	0.2239	yes	N/A
Q00362	2ABA_YEAST	No assigned EC number	0.5306	0.4579	0.0931	yes	N/A
Q6NY64	2ABD_DANRE	No assigned EC number	0.8514	0.9439	0.2259	yes	N/A
Q925E7	2ABD_MOUSE	No assigned EC number	0.8514	0.9439	0.2229	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	107
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-14

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 20/120 (16%)

Query: 7   VHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMF--------DR---IN 55
           +H  L  +L  +YEND IFDKFE+ +SG D  +++GSY+N F ++        D    +N
Sbjct: 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVN 379

Query: 56  KRDATLEAAREIAKPKTLLRPRKVCTGGKRKKDEIS---------VDCLDFNKKILHTAW 106
             D + E  +   +   + +  K+     R     +          D LD  KKILH +W
Sbjct: 380 LADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSW 439

Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG1354|consensus	433		100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.55
KOG2394|consensus	636		97.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.91
KOG0266|consensus	456		94.79
KOG1446|consensus	311		94.71
KOG0288|consensus	459		94.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.28
KOG0315|consensus	311		94.22
KOG0271|consensus	480		94.1
KOG0273|consensus	524		94.02
KOG0272|consensus	459		93.9
KOG0313|consensus	423		93.63
KOG0266|consensus	456		93.52
KOG0299|consensus	479		93.49
KOG0291|consensus	893		92.6
KOG0284|consensus	464		92.54
KOG0275|consensus	508		92.33
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	92.0
PTZ00421	493	coronin; Provisional	91.21
KOG0647|consensus	347		91.1
KOG0279|consensus	315		91.05
KOG0272|consensus	459		90.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.76
KOG0271|consensus	480		90.56
KOG0283|consensus	712		90.32
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	90.19
KOG0310|consensus	487		90.05
KOG0268|consensus	433		89.64
KOG0313|consensus	423		89.44
KOG0645|consensus	312		89.09
KOG0282|consensus	503		88.47
PTZ00421	493	coronin; Provisional	87.78
KOG0973|consensus	942		87.23
KOG1274|consensus	933		86.99
KOG2919|consensus	406		86.72
KOG1009|consensus	434		86.63
KOG2394|consensus	636		86.35
KOG0279|consensus	315		86.19
KOG0273|consensus	524		85.57
PLN00181	793	protein SPA1-RELATED; Provisional	85.19
KOG0293|consensus	519		85.1
KOG0318|consensus	603		85.0
KOG0318|consensus	603		84.8
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	84.73
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.63
PTZ00420	568	coronin; Provisional	84.38
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.96
PLN00181	793	protein SPA1-RELATED; Provisional	83.41
KOG4328|consensus	498		83.03
PTZ00420	568	coronin; Provisional	82.46
KOG0286|consensus	343		81.23
KOG0280|consensus	339		80.37
KOG2096|consensus	420		80.06

>KOG1354|consensus

Probab=100.00  E-value=7.9e-46  Score=306.07  Aligned_cols=105  Identities=68%  Similarity=1.076  Sum_probs=102.9

Q ss_pred             CCcccchHHHHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEee--cCCCcceeEeeeccccCccccCCCcce
Q psy13887          2 FPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFD--RINKRDATLEAAREIAKPKTLLRPRKV   79 (107)
Q Consensus         2 v~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd--~~~~~~~~LeAsk~~~k~k~~~~~~~~   79 (107)
                      |+|||||||||+|||+|||||||||||||||||++++||||||||+||||+  +++.++++|||++++.++++++++++|
T Consensus       307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V  386 (433)
T KOG1354|consen  307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLV  386 (433)
T ss_pred             ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceee
Confidence            789999999999999999999999999999999999999999999999999  778899999999999999999999999


Q ss_pred             eeCCCCCCCCCCCCCCcccccccccCC
Q psy13887         80 CTGGKRKKDEISVDCLDFNKKILHTAW  106 (107)
Q Consensus        80 ~~~~~~~~~~~~~d~~DF~kKILH~aW  106 (107)
                      +.+|+|+++++++|++||++||||+||
T Consensus       387 ~~~g~r~~~~~~vd~ldf~kkilh~aW  413 (433)
T KOG1354|consen  387 SSSGKRKRDEISVDALDFRKKILHTAW  413 (433)
T ss_pred             ecCCCccccccccchhhhhhHHHhhcc
Confidence            999999999999999999999999999

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.94  E-value=8.3e-28  Score=198.70  Aligned_cols=105  Identities=31%  Similarity=0.456  Sum_probs=82.1

Q ss_pred             CCcccchHHHHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCC-----cceeEeeeccccCccccCCC
Q psy13887          2 FPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINK-----RDATLEAAREIAKPKTLLRP   76 (107)
Q Consensus         2 v~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~-----~~~~LeAsk~~~k~k~~~~~   76 (107)
                      |+|+|+|+.|+++|||+||||||||||||.+|||+++||||||+|+|.||+..+.     ..|++.|+.++.+.+..-.+
T Consensus       315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~  394 (460)
T COG5170         315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCET  394 (460)
T ss_pred             ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEecccCCcccccCcccc
Confidence            6899999999999999999999999999999999999999999999999997643     35888999888776521111


Q ss_pred             cc--------------ee-eCCCCCCCCCCCCCCcccccccccCC
Q psy13887         77 RK--------------VC-TGGKRKKDEISVDCLDFNKKILHTAW  106 (107)
Q Consensus        77 ~~--------------~~-~~~~~~~~~~~~d~~DF~kKILH~aW  106 (107)
                      .+              ++ .+++.......+|.+||.|||||.+|
T Consensus       395 nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD~d~ld~~k~ilh~sW  439 (460)
T COG5170         395 NNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSW  439 (460)
T ss_pred             cccccccccccccccccccccCcceeeccCcchhHHHHHHHhhcc
Confidence            10              00 11111112335789999999999999

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.55  E-value=0.00013  Score=40.20  Aligned_cols=25  Identities=24%  Similarity=0.543  Sum_probs=23.1

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEee
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      ..++|+|++..|+|||+++.++|||
T Consensus        15 ~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   15 NSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEecccccceeeCCCCEEEEEC
Confidence            3579999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2394|consensus

Probab=97.12  E-value=0.00054  Score=60.52  Aligned_cols=49  Identities=16%  Similarity=0.392  Sum_probs=44.0

Q ss_pred             cccchHHHHHhhhhhhhccccccceee-EEcCCCCeEEecccCCeEEEeecC
Q psy13887          4 SPQVHEYLRSKLCSLYENDCIFDKFEV-CWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus         4 t~~vhe~Lr~kLcdLYEND~IFDKFec-~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      ...|.+|...+|-.+.-  +.|..+-| ||||||++|+||+=++++-||.-.
T Consensus       313 fLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  313 FLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             eEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            34678888899999888  99999999 999999999999999999999764

>smart00320 WD40 WD40 repeats

Probab=95.91  E-value=0.013  Score=28.48  Aligned_cols=25  Identities=16%  Similarity=0.306  Sum_probs=22.1

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEee
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      ..++|++++..+++|+.++.+++|+
T Consensus        16 ~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       16 TSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             eEEEECCCCCEEEEecCCCeEEEcC
Confidence            3568999999999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0266|consensus

Probab=94.79  E-value=0.035  Score=46.28  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=26.0

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      |++++||+.+++|||+++++|||..++.
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCc
Confidence            6899999999999999999999998765

>KOG1446|consensus

Probab=94.71  E-value=0.04  Score=45.70  Aligned_cols=29  Identities=7%  Similarity=0.242  Sum_probs=26.5

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|++|||+.||+||+++..+||..+++
T Consensus       236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  236 LSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            58999999999999999999999998653

>KOG0288|consensus

Probab=94.63  E-value=0.022  Score=49.16  Aligned_cols=52  Identities=12%  Similarity=0.126  Sum_probs=40.0

Q ss_pred             ccchHHHHHhhhhhhhccccccce---eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887          5 PQVHEYLRSKLCSLYENDCIFDKF---EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus         5 ~~vhe~Lr~kLcdLYEND~IFDKF---ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..|||-=-...|-+|..+|.|+--   -+||||||.||++||-++-+.||+..++
T Consensus       365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence            344443334567788888888544   4599999999999999999999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.31  E-value=0.06  Score=40.17  Aligned_cols=27  Identities=15%  Similarity=0.489  Sum_probs=24.3

Q ss_pred             eeEEcCCCCeEEecccCCe---EEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNF---FRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~---F~ifd~~~   55 (107)
                      .++|||+|+++++|++.|+   ..+||...
T Consensus       105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen  105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             EEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            5899999999999999877   99999874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.28  E-value=0.053  Score=40.43  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=24.5

Q ss_pred             eeeEEcCCCCeEEeccc------CCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSY------NNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSY------nn~F~ifd~~~   55 (107)
                      -.|+|||||++++|.+-      +|-|+||+..+
T Consensus       147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            46899999999999875      69999999865

>KOG0315|consensus

Probab=94.22  E-value=0.043  Score=45.21  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .+|.||+||.|++|||-.+..|+|+...
T Consensus       262 Wdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  262 WDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             EeeeeccCccEEEecCCCCceeeccccc
Confidence            4799999999999999999999999754

>KOG0271|consensus

Probab=94.10  E-value=0.041  Score=47.51  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=23.9

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      +.|||||+.|+|||-+|.+++||...
T Consensus       163 vawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  163 VAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             EEECCCcchhhccccCCeEEEecCCC
Confidence            48999999999999999999999654

>KOG0273|consensus

Probab=94.02  E-value=0.042  Score=48.08  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             cccccccee---eEEcCCCCeEEecccCCeEEEeecCCCcceeE
Q psy13887         21 NDCIFDKFE---VCWSGTDSAIMTGSYNNFFRMFDRINKRDATL   61 (107)
Q Consensus        21 ND~IFDKFe---c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~L   61 (107)
                      --++|+-=+   +.||.||..++||||++..|||+..+..-.+|
T Consensus       229 ~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl  272 (524)
T KOG0273|consen  229 GKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTL  272 (524)
T ss_pred             cccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhh
Confidence            344554333   48999999999999999999999877543333

>KOG0272|consensus

Probab=93.90  E-value=0.053  Score=46.88  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             cceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .=|.+.|||+|-+++|||-+|..+|||-..
T Consensus       347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            457899999999999999999999999754

>KOG0313|consensus

Probab=93.63  E-value=0.031  Score=47.82  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=33.1

Q ss_pred             hhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCCcceeEe
Q psy13887         17 SLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLE   62 (107)
Q Consensus        17 dLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~Le   62 (107)
                      --|+++...|-.--.+-+-+++|+||||.+..|||+..++.--+++
T Consensus        96 P~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~  141 (423)
T KOG0313|consen   96 PKPLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIV  141 (423)
T ss_pred             CCccccccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEe
Confidence            3355555556666666666899999999999999999775433333

>KOG0266|consensus

Probab=93.52  E-value=0.11  Score=43.32  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC-CcceeEeeec
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN-KRDATLEAAR   65 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~-~~~~~LeAsk   65 (107)
                      +-|||+++|+.|++||+++.+|||+..+ ...-+|++-.
T Consensus       250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs  288 (456)
T KOG0266|consen  250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS  288 (456)
T ss_pred             EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence            8899999999999999999999999975 3233444443

>KOG0299|consensus

Probab=93.49  E-value=0.087  Score=45.82  Aligned_cols=29  Identities=14%  Similarity=0.223  Sum_probs=26.2

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      +-+|+|+||++++||.-.+.|+||+..+.
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~  234 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTL  234 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCccc
Confidence            45799999999999999999999998754

>KOG0291|consensus

Probab=92.60  E-value=0.16  Score=46.89  Aligned_cols=39  Identities=23%  Similarity=0.429  Sum_probs=31.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC--cceeEeeeccc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK--RDATLEAAREI   67 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~--~~~~LeAsk~~   67 (107)
                      ..++|++|+.+++|||++.+|||+.-..  +-=+||+..++
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdv  523 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDV  523 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccce
Confidence            4589999999999999999999998654  44567776665

>KOG0284|consensus

Probab=92.54  E-value=0.11  Score=44.87  Aligned_cols=41  Identities=20%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC-cceeEeeeccccC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK-RDATLEAAREIAK   69 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~-~~~~LeAsk~~~k   69 (107)
                      .++|.|+|++++|||+++.|-.|.-.+- -+..|||--++-|
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr  142 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR  142 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce
Confidence            4699999999999999999999975321 2344555444433

>KOG0275|consensus

Probab=92.33  E-value=0.086  Score=45.14  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=28.7

Q ss_pred             ee-EEcCCCCeEEecccCCeEEEeecCCC---cceeEeee
Q psy13887         29 EV-CWSGTDSAIMTGSYNNFFRMFDRINK---RDATLEAA   64 (107)
Q Consensus        29 ec-~~sgd~~~v~TGSYnn~F~ifd~~~~---~~~~LeAs   64 (107)
                      || .|||||++++|||-++|+.||+-.++   .|...||.
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq  256 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ  256 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh
Confidence            67 79999999999999999999987653   34444444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=92.00  E-value=0.24  Score=34.11  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+++++.+++|+.++.+++|+..+.
T Consensus        14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~   41 (289)
T cd00200          14 CVAFSPDGKLLATGSGDGTIKVWDLETG   41 (289)
T ss_pred             EEEEcCCCCEEEEeecCcEEEEEEeeCC
Confidence            4699999999999999999999998653

>PTZ00421 coronin; Provisional

Probab=91.21  E-value=0.33  Score=41.61  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=25.7

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||+||..++|||.++.++|||...+
T Consensus       172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             EEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence            35799999999999999999999997643

>KOG0647|consensus

Probab=91.10  E-value=0.39  Score=40.33  Aligned_cols=42  Identities=21%  Similarity=0.500  Sum_probs=35.6

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccccC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAK   69 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~k   69 (107)
                      +.||||-||+-|.+|+=++..++||-.+.+-.++.+--.+-|
T Consensus        76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvk  117 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVK  117 (347)
T ss_pred             EEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccccee
Confidence            679999999999999999999999999887777666555544

>KOG0279|consensus

Probab=91.05  E-value=0.51  Score=39.25  Aligned_cols=42  Identities=17%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC---------cceeEeeeccccCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK---------RDATLEAAREIAKP   70 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~---------~~~~LeAsk~~~k~   70 (107)
                      .|..|+||++.++|||....|+||.+++         ...+|....++.-+
T Consensus        68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~  118 (315)
T KOG0279|consen   68 DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR  118 (315)
T ss_pred             ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence            5789999999999999999999999863         23455555555433

>KOG0272|consensus

Probab=90.90  E-value=0.24  Score=42.97  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=27.6

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      |.|+|.+||+.++||+-+++=||||..+++
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr  336 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGR  336 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCc
Confidence            789999999999999999999999987654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.76  E-value=0.59  Score=33.91  Aligned_cols=28  Identities=11%  Similarity=0.199  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeEEec-ccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTG-SYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TG-SYnn~F~ifd~~~~   56 (107)
                      .++|+|||++++++ ++++..+|||..+.
T Consensus       253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       253 QLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             eEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            46899999999886 56999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0271|consensus

Probab=90.56  E-value=0.27  Score=42.56  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .+.+|||+++|+++|+++.++.|+...+
T Consensus       372 ~V~fSPd~r~IASaSFDkSVkLW~g~tG  399 (480)
T KOG0271|consen  372 HVSFSPDGRYIASASFDKSVKLWDGRTG  399 (480)
T ss_pred             eEEECCCccEEEEeecccceeeeeCCCc
Confidence            4789999999999999999999987643

>KOG0283|consensus

Probab=90.32  E-value=0.5  Score=43.07  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=28.0

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccc
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREI   67 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~   67 (107)
                      +|++|||+.++-|+|+++.++|+..   +..|+-+...
T Consensus       457 vcy~PdGk~avIGt~~G~C~fY~t~---~lk~~~~~~I  491 (712)
T KOG0283|consen  457 VCYSPDGKGAVIGTFNGYCRFYDTE---GLKLVSDFHI  491 (712)
T ss_pred             EEeccCCceEEEEEeccEEEEEEcc---CCeEEEeeeE
Confidence            5999999999999999999999974   3444444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=90.19  E-value=0.33  Score=33.40  Aligned_cols=24  Identities=25%  Similarity=0.612  Sum_probs=22.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      .++|++++..++||+.++.++||+
T Consensus       266 ~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         266 SLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEECCCCCEEEEecCCCeEEecC
Confidence            468999999999999999999995

>KOG0310|consensus

Probab=90.05  E-value=0.37  Score=42.15  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=26.1

Q ss_pred             EEcCCCCeEEecccCCeEEEeecCCCcceeEeeec
Q psy13887         31 CWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR   65 (107)
Q Consensus        31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk   65 (107)
                      +.+..+.-|+||||++++|.||........+|.+-
T Consensus       161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh  195 (487)
T KOG0310|consen  161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH  195 (487)
T ss_pred             cccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence            33445667999999999999998776555566553

>KOG0268|consensus

Probab=89.64  E-value=0.25  Score=42.41  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=25.5

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      -++.+||.|+-++||||+..+|||..+.
T Consensus       276 ~dVdfsptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  276 MDVDFSPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             EEeccCCCcchhccccccceEEEeecCC
Confidence            4688999999999999999999999764

>KOG0313|consensus

Probab=89.44  E-value=0.36  Score=41.48  Aligned_cols=36  Identities=11%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             EEcCCCCeEEecccCCeEEEeecCCCcceeEeeecc
Q psy13887         31 CWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE   66 (107)
Q Consensus        31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~   66 (107)
                      ..++||..+.+|||++...||+-....+.++|-.-+
T Consensus       200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~  235 (423)
T KOG0313|consen  200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN  235 (423)
T ss_pred             EecCCCCeEEeecccceeeecccCCCccccccccch
Confidence            568999999999999999999966666778886655

>KOG0645|consensus

Probab=89.09  E-value=0.49  Score=39.26  Aligned_cols=26  Identities=15%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .|+|||.|+++++|||....-||...
T Consensus        66 svAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   66 SVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             eeeecCCCcEEEEeeccceEEEeecC
Confidence            57899999999999999999999865

>KOG0282|consensus

Probab=88.47  E-value=0.31  Score=42.76  Aligned_cols=28  Identities=11%  Similarity=0.535  Sum_probs=26.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      +++||.+|+.++|+||..+.++||.+++
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG  290 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETG  290 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccc
Confidence            4799999999999999999999999865

>PTZ00421 coronin; Provisional

Probab=87.78  E-value=0.74  Score=39.52  Aligned_cols=28  Identities=11%  Similarity=0.148  Sum_probs=24.9

Q ss_pred             eeeEEcC-CCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSG-TDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sg-d~~~v~TGSYnn~F~ifd~~~   55 (107)
                      ..++||| |+..++|||+++.++||+...
T Consensus        79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         79 IDVAFNPFDPQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence            4579999 899999999999999999753

>KOG0973|consensus

Probab=87.23  E-value=0.45  Score=44.53  Aligned_cols=29  Identities=28%  Similarity=0.473  Sum_probs=25.7

Q ss_pred             cceeeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      |=-++||||||+.++++|+.|.+.||+..
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccc
Confidence            34578999999999999999999999864

>KOG1274|consensus

Probab=86.99  E-value=0.85  Score=42.65  Aligned_cols=42  Identities=21%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             cceee-EEcCCCCeEEecccCCeEEEeecC------CCcceeEeeeccc
Q psy13887         26 DKFEV-CWSGTDSAIMTGSYNNFFRMFDRI------NKRDATLEAAREI   67 (107)
Q Consensus        26 DKFec-~~sgd~~~v~TGSYnn~F~ifd~~------~~~~~~LeAsk~~   67 (107)
                      -+|-| +|||.|.||++|+-+|.+-||+..      -...|+-||-+..
T Consensus       233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN  281 (933)
T ss_pred             cceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence            34555 999999999999999999999988      3455666665433

>KOG2919|consensus

Probab=86.72  E-value=0.84  Score=38.95  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=29.1

Q ss_pred             cccccceeeEEcCCCCeEEecccCCeEEEeecC-CCcce
Q psy13887         22 DCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRI-NKRDA   59 (107)
Q Consensus        22 D~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~-~~~~~   59 (107)
                      |.|=--+.+|||+||.++..| |++.+|||+.. +++++
T Consensus       156 de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c  193 (406)
T KOG2919|consen  156 DEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDC  193 (406)
T ss_pred             HhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCC
Confidence            345556889999999999865 99999999984 45443

>KOG1009|consensus

Probab=86.63  E-value=0.48  Score=40.88  Aligned_cols=29  Identities=24%  Similarity=0.588  Sum_probs=26.2

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ++.||++|+..+++||=.|..++||...+
T Consensus       127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen  127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             hhhhccCCCceeeeeeccceEEEEEeccc
Confidence            45899999999999999999999998743

>KOG2394|consensus

Probab=86.35  E-value=0.69  Score=41.46  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      +.|+||||++++|=|-+++.|||+-..
T Consensus       295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt  321 (636)
T KOG2394|consen  295 EFAFSPDGKYLATVSQDGFLRIFDFDT  321 (636)
T ss_pred             ceeEcCCCceEEEEecCceEEEeeccH
Confidence            579999999999999999999998764

>KOG0279|consensus

Probab=86.19  E-value=0.98  Score=37.60  Aligned_cols=31  Identities=19%  Similarity=0.475  Sum_probs=27.8

Q ss_pred             cceeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      |.-.+++|+|+++|+|||=++...+|+.-+.
T Consensus       107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             ceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence            6678999999999999999999999987643

>KOG0273|consensus

Probab=85.57  E-value=0.84  Score=40.22  Aligned_cols=42  Identities=14%  Similarity=0.277  Sum_probs=32.9

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC--------cceeEeeeccccC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK--------RDATLEAAREIAK   69 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~--------~~~~LeAsk~~~k   69 (107)
                      +.+.+||+|+++++||.++-+|||+....        .+...|...+..-
T Consensus       456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG  505 (524)
T ss_pred             EEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence            46899999999999999999999998642        3455666665543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=85.19  E-value=0.97  Score=39.96  Aligned_cols=26  Identities=19%  Similarity=0.612  Sum_probs=23.8

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeec
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDR   53 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~   53 (107)
                      ..+||+|++..++||+.++.++||+.
T Consensus       767 ~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        767 SSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEcCCCCeEEEecCCCcEEEEec
Confidence            46799999999999999999999974

>KOG0293|consensus

Probab=85.10  E-value=0.9  Score=39.78  Aligned_cols=38  Identities=24%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             hhhccccccceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         18 LYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        18 LYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      +|++--=|--=.|||-|||.+++|||-...|-+||.++
T Consensus       306 ~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  306 LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            45554334445689999999999999999999999875

>KOG0318|consensus

Probab=85.00  E-value=0.93  Score=40.49  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=23.4

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      ++|||++.+|+|||-+..+.||...
T Consensus       536 ~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             EEeCCCceEEEeccccceEEEEEcc
Confidence            3999999999999999999999875

>KOG0318|consensus

Probab=84.80  E-value=1.1  Score=40.03  Aligned_cols=28  Identities=21%  Similarity=0.483  Sum_probs=26.1

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      |-+.||||+++++|-|=.-..+|||...
T Consensus       239 falsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  239 FALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             EEEEECCCCceEEEecCCceEEEEEeec
Confidence            6799999999999999999999999864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=84.73  E-value=0.79  Score=42.44  Aligned_cols=31  Identities=16%  Similarity=0.476  Sum_probs=25.7

Q ss_pred             cceeeEEcCCCCeEEeccc------CCeEEEeecCCC
Q psy13887         26 DKFEVCWSGTDSAIMTGSY------NNFFRMFDRINK   56 (107)
Q Consensus        26 DKFec~~sgd~~~v~TGSY------nn~F~ifd~~~~   56 (107)
                      .+-.++|.|||.++++.|.      .-.||||+|++.
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~  247 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE  247 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce
Confidence            3456799999999999998      257999999863

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.63  E-value=1.4  Score=37.58  Aligned_cols=56  Identities=27%  Similarity=0.479  Sum_probs=38.2

Q ss_pred             ccchHHHHHhhhhhhhccccccceeeEEcCCC------CeEEecccCCeEEEeecCCC----cceeEeee
Q psy13887          5 PQVHEYLRSKLCSLYENDCIFDKFEVCWSGTD------SAIMTGSYNNFFRMFDRINK----RDATLEAA   64 (107)
Q Consensus         5 ~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~------~~v~TGSYnn~F~ifd~~~~----~~~~LeAs   64 (107)
                      |++.|.-..++.    ++.-||..-+|...=+      ..|++|||++..|||.....    .++.||..
T Consensus         4 Fk~rewWst~~~----~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~   69 (418)
T PF14727_consen    4 FKTREWWSTKCG----ENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ   69 (418)
T ss_pred             ccchheeeccCC----CCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe
Confidence            555566655554    2566888777665433      48999999999999998642    25666644

>PTZ00420 coronin; Provisional

Probab=84.38  E-value=1.6  Score=38.51  Aligned_cols=29  Identities=7%  Similarity=0.181  Sum_probs=25.7

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||+||+.++||+.++.++|||...+
T Consensus       171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             EEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            35799999999999999999999997654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.96  E-value=1.8  Score=23.90  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=16.4

Q ss_pred             cceeeEEcCCCCeEEecccC---CeEEEe
Q psy13887         26 DKFEVCWSGTDSAIMTGSYN---NFFRMF   51 (107)
Q Consensus        26 DKFec~~sgd~~~v~TGSYn---n~F~if   51 (107)
                      +-+...|||||++|+=.|.-   +.+.||
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567999999998755443   455554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN00181 protein SPA1-RELATED; Provisional

Probab=83.41  E-value=1.4  Score=38.97  Aligned_cols=26  Identities=12%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|++||.+++|||.++.++||+..
T Consensus       488 ~i~fs~dg~~latgg~D~~I~iwd~~  513 (793)
T PLN00181        488 AIGFDRDGEFFATAGVNKKIKIFECE  513 (793)
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECC
Confidence            46899999999999999999999864

>KOG4328|consensus

Probab=83.03  E-value=1.1  Score=39.25  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=23.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeec
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDR   53 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~   53 (107)
                      ..++||+|..++|-+|.|.+||||.
T Consensus       374 sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  374 SAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             eeEEcCCCCceEeeccCCceEEeec
Confidence            3689999999999999999999997

>PTZ00420 coronin; Provisional

Probab=82.46  E-value=1.7  Score=38.29  Aligned_cols=28  Identities=18%  Similarity=0.476  Sum_probs=24.2

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      .|+|+|++..+ +|||+++.++|||...+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg  158 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE  158 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence            56999999876 69999999999998654

>KOG0286|consensus

Probab=81.23  E-value=1.1  Score=37.65  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             ceee-EEcCCCCeEEecccCCeEEEe
Q psy13887         27 KFEV-CWSGTDSAIMTGSYNNFFRMF   51 (107)
Q Consensus        27 KFec-~~sgd~~~v~TGSYnn~F~if   51 (107)
                      +-.| ..||||..|.|||+..+.|||
T Consensus       317 RvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  317 RVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             eeEEEEECCCCcEEEecchhHheeec
Confidence            4455 789999999999999999998

>KOG0280|consensus

Probab=80.37  E-value=1.3  Score=37.19  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             CCCCeEEecccCCeEEEeecCC
Q psy13887         34 GTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        34 gd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      |+.-+|+||||..+.|++|..+
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             CCCceEEEeccccceeeeehhc
Confidence            4667999999999999999753

>KOG2096|consensus

Probab=80.06  E-value=2.1  Score=36.60  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCCcceeEeeecccc
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIA   68 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~   68 (107)
                      .|||++..+++|-|=++.+||||.    |+..|+.-+|.
T Consensus       284 ~aFsn~S~r~vtvSkDG~wriwdt----dVrY~~~qDpk  318 (420)
T KOG2096|consen  284 AAFSNSSTRAVTVSKDGKWRIWDT----DVRYEAGQDPK  318 (420)
T ss_pred             eeeCCCcceeEEEecCCcEEEeec----cceEecCCCch
Confidence            599999999999999999999995    45666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-47

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  184 bits (466), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 91/101 (90%)
Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS +MTGSYNNFFRMFDR  KRD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 383
Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E  KP+T+L+PRKVC  GKRKKDEISVD LDFNKKILHTAW
Sbjct: 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW 424

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-34

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score =  122 bits (306), Expect = 1e-34
 Identities = 84/101 (83%), Positives = 91/101 (90%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS +MTGSYNNFFRMFDR  KRD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 383

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E  KP+T+L+PRKVC  GKRKKDEISVD LDFNKKILHTAW
Sbjct: 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW 424

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.77
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.69
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.39
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.21
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	96.12
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	95.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.71
2pm7_B	297	Protein transport protein SEC13, protein transport	95.66
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.6
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.53
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.46
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.43
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.33
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.28
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.22
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.12
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.11
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.08
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	94.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	94.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	94.89
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.89
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.88
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.86
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.83
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.79
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.69
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.68
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.62
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	94.6
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.59
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.57
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.48
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.36
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.33
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.31
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.31
3jrp_A	379	Fusion protein of protein transport protein SEC13	94.3
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.27
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.27
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.24
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.23
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.22
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.15
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	94.05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.03
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.97
2pm7_B	297	Protein transport protein SEC13, protein transport	93.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.87
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.84
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	93.83
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.81
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.78
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	93.73
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.68
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.62
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.41
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.29
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.12
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	92.87
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.84
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	92.79
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.71
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.63
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.62
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.6
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.57
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	92.48
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.47
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	92.45
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	92.41
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.31
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	92.06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.05
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.03
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	91.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	91.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	91.81
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	91.76
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	91.6
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	91.58
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	91.55
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.12
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	90.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.83
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.35
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	90.31
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.23
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.15
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	90.15
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	90.09
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	89.46
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	89.2
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	89.2
3jro_A	753	Fusion protein of protein transport protein SEC13	89.13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.01
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	88.66
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	88.4
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	88.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	88.01
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	87.59
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	87.56
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	87.53
3jro_A	753	Fusion protein of protein transport protein SEC13	87.13
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	86.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	85.71
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	85.67
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	85.55
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	85.52
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	85.32
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	84.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	84.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	84.47
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	83.97
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	83.51
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	82.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	82.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	82.37
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	80.76
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	80.33
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	80.29

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.77  E-value=4.1e-19  Score=133.37  Aligned_cols=105  Identities=80%  Similarity=1.332  Sum_probs=99.6

Q ss_pred             CCcccchHHHHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccccCccccCCCcceee
Q psy13887          2 FPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTLLRPRKVCT   81 (107)
Q Consensus         2 v~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~k~k~~~~~~~~~~   81 (107)
                      +.++..|+.++.+||++|++||||+.|.++|||||++++|||.++.++||+..++..++||+.+++.+++....+++++.
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (447)
T 3dw8_B          320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA  399 (447)
T ss_dssp             SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred             cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999998888988888


Q ss_pred             CCCCCCCCCCCCCCcccccccccCC
Q psy13887         82 GGKRKKDEISVDCLDFNKKILHTAW  106 (107)
Q Consensus        82 ~~~~~~~~~~~d~~DF~kKILH~aW  106 (107)
                      ++++.+.++..+.+||+++|++++|
T Consensus       400 ~~~~~~~~~~~~~~~~~~~i~~~~~  424 (447)
T 3dw8_B          400 SGKRKKDEISVDSLDFNKKILHTAW  424 (447)
T ss_dssp             SSCCCTTCEEGGGCCTTSCCCEEEE
T ss_pred             cCCcccccccccccccCCceeEEEE
Confidence            8888888888899999999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.69  E-value=0.0011  Score=50.23  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=23.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeec
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDR   53 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~   53 (107)
                      .++|||||++++|||.++.+|||+.
T Consensus       317 ~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          317 EVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEc
Confidence            4799999999999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.39  E-value=0.0021  Score=45.73  Aligned_cols=27  Identities=19%  Similarity=0.514  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||++++|||.++.++||+..+
T Consensus       311 ~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          311 SLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            369999999999999999999999754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.21  E-value=0.0029  Score=44.55  Aligned_cols=26  Identities=8%  Similarity=0.241  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|||||++++|||.++.++||+..
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECC
Confidence            36999999999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=96.12  E-value=0.0052  Score=47.49  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|||||++++|||.++.++|||..++
T Consensus        21 ~~a~spdg~~las~~~d~~v~iWd~~~~   48 (577)
T 2ymu_A           21 GVAFSPDGQTIASASDDKTVKLWNRNGQ   48 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            3799999999999999999999997553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.00  E-value=0.005  Score=46.57  Aligned_cols=28  Identities=7%  Similarity=-0.047  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|||||++|+|||.++.++|||..+.
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             eEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            3689999999999999999999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.97  E-value=0.0059  Score=45.92  Aligned_cols=29  Identities=24%  Similarity=0.367  Sum_probs=25.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++|||||+.++|||+++.++||+..+.+
T Consensus       349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          349 CLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            35899999999999999999999976543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.95  E-value=0.0039  Score=45.82  Aligned_cols=27  Identities=19%  Similarity=0.581  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||++++|||.++.++||+..+
T Consensus       291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          291 SLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEeecCceEEEEEEee
Confidence            579999999999999999999999643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=95.88  E-value=0.0078  Score=41.89  Aligned_cols=29  Identities=14%  Similarity=0.318  Sum_probs=25.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++||+||+.++|||.++.++||+....+
T Consensus       311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          311 SVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            46999999999999999999999987643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.71  E-value=0.01  Score=41.71  Aligned_cols=28  Identities=14%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+++|++++|||+++.++||+...+
T Consensus        72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            4699999999999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.66  E-value=0.01  Score=42.98  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||++++|||+++.++||+..+
T Consensus        14 ~~~~s~~g~~las~s~D~~v~iw~~~~   40 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSSDKTIKIFEVEG   40 (297)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEBCS
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEecCC
Confidence            479999999999999999999999753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.60  E-value=0.007  Score=45.89  Aligned_cols=26  Identities=8%  Similarity=0.241  Sum_probs=24.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|||||++|+|||.++.++||+..
T Consensus       369 ~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          369 SLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECC
Confidence            46999999999999999999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.53  E-value=0.011  Score=44.78  Aligned_cols=28  Identities=14%  Similarity=0.360  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++||+||++++|||.++.++||+....
T Consensus       152 sv~fspdg~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence            4699999999999999999999998653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.46  E-value=0.015  Score=42.27  Aligned_cols=28  Identities=11%  Similarity=0.247  Sum_probs=25.5

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||..++|||+++.++||+..+.
T Consensus        18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~   45 (304)
T 2ynn_A           18 GIDFHPTEPWVLTTLYSGRVELWNYETQ   45 (304)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            5799999999999999999999998654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.43  E-value=0.02  Score=40.58  Aligned_cols=29  Identities=31%  Similarity=0.672  Sum_probs=26.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++|++|++.++|||+++.++||+..+..
T Consensus        91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  119 (368)
T 3mmy_A           91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQ  119 (368)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence            46999999999999999999999987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.33  E-value=0.011  Score=43.76  Aligned_cols=29  Identities=7%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      +-++|||||+.++|||.++.++||+..+.
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~   48 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGD   48 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCC
Confidence            35799999999999999999999987653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.28  E-value=0.016  Score=42.43  Aligned_cols=28  Identities=11%  Similarity=0.335  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .|+|++||++++|||+++.++|||...+
T Consensus        70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~   97 (319)
T 3frx_A           70 DCTLTADGAYALSASWDKTLRLWDVATG   97 (319)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            4799999999999999999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.018  Score=42.22  Aligned_cols=35  Identities=6%  Similarity=0.030  Sum_probs=28.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCcce--eEee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDA--TLEA   63 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~--~LeA   63 (107)
                      .++|+|||..++|||.++.++|||......+  +++.
T Consensus       175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~  211 (343)
T 3lrv_A          175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV  211 (343)
T ss_dssp             EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec
Confidence            4599999999999999999999998765443  4444

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.12  E-value=0.021  Score=46.03  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=25.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++||+....
T Consensus       541 ~v~fspdg~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          541 CVSWSPDNVRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             EEEECCCCCEEEEEECCCcEEEEECCCc
Confidence            4799999999999999999999998654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.11  E-value=0.021  Score=45.96  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      -++|||||++++|||+++.++|||...
T Consensus        64 ~~~~spdg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           64 VAKTSPSGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             EEEECCCCcEEEEEeCCCCEEEeECCC
Confidence            469999999999999999999999754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.08  E-value=0.013  Score=43.78  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      .++|||||++++|||+++.++||+
T Consensus       331 ~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEecC
Confidence            469999999999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.04  E-value=0.021  Score=43.04  Aligned_cols=28  Identities=29%  Similarity=0.586  Sum_probs=25.5

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||++++|||.++.++|||..+.
T Consensus       128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~  155 (393)
T 1erj_A          128 SVCFSPDGKFLATGAEDRLIRIWDIENR  155 (393)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            5799999999999999999999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=94.97  E-value=0.026  Score=41.83  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             hccccccceeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         20 ENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        20 END~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      +.|.|.   -++||+||++++|||.++.++||+.....
T Consensus        27 ~~~~V~---~v~~s~~g~~la~g~~dg~v~iw~~~~~~   61 (447)
T 3dw8_B           27 EADIIS---TVEFNHSGELLATGDKGGRVVIFQQEQEN   61 (447)
T ss_dssp             GGGSEE---EEEECSSSSEEEEEETTSEEEEEEECC--
T ss_pred             ccCcEE---EEEECCCCCEEEEEcCCCeEEEEEecCCC
Confidence            445553   46999999999999999999999987543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.97  E-value=0.025  Score=42.48  Aligned_cols=28  Identities=25%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+|||.+++|||.++.++|||...+
T Consensus       254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          254 SVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             EEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             EEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            4799999999999999999999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.97  E-value=0.016  Score=47.03  Aligned_cols=24  Identities=33%  Similarity=0.635  Sum_probs=22.6

Q ss_pred             eEEcCCCCeEEecccCCeEEEeec
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDR   53 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~   53 (107)
                      ++|||||++++|||.++.++||+.
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEecC
Confidence            689999999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.97  E-value=0.02  Score=43.36  Aligned_cols=28  Identities=14%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||++++|||.++.++|||...+
T Consensus       132 ~v~~spdg~~l~sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B          132 TVSVLSSGTQAVSGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            4689999999999999999999997653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.95  E-value=0.02  Score=43.32  Aligned_cols=32  Identities=9%  Similarity=-0.013  Sum_probs=26.1

Q ss_pred             eeEEcCCC-CeEEecccCCeEEEeecCCCccee
Q psy13887         29 EVCWSGTD-SAIMTGSYNNFFRMFDRINKRDAT   60 (107)
Q Consensus        29 ec~~sgd~-~~v~TGSYnn~F~ifd~~~~~~~~   60 (107)
                      .++||||| ..|+|||.++.++|||...++-+.
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            46999998 578999999999999987654333

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.93  E-value=0.024  Score=42.42  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCe-EEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNF-FRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~-F~ifd~~~~   56 (107)
                      .++|||||++++|||.++. ++|||...+
T Consensus       200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          200 MVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            4699999999999999998 999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.93  E-value=0.022  Score=39.58  Aligned_cols=27  Identities=15%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||..++|||.++.++||+...
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~   42 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDK   42 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECS
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCC
Confidence            479999999999999999999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=94.92  E-value=0.02  Score=45.04  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||+++++||+++.++|||..+
T Consensus       197 ~v~wspdg~~lasgs~dg~v~iwd~~~  223 (434)
T 2oit_A          197 SVCWSPKGKQLAVGKQNGTVVQYLPTL  223 (434)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEECTTC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEccCC
Confidence            459999999999999999999999763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=94.89  E-value=0.026  Score=43.58  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=24.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++|||..+.
T Consensus        62 ~l~fspdg~~las~~~d~~i~vWd~~~~   89 (577)
T 2ymu_A           62 GVAFSPDGQTIASASDDKTVKLWNRNGQ   89 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            3689999999999999999999997653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.89  E-value=0.024  Score=40.26  Aligned_cols=28  Identities=11%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++||+....
T Consensus       278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          278 GIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             EEEEecCCCEEEEEccCCeEEEEECCCC
Confidence            4699999999999999999999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.88  E-value=0.017  Score=42.31  Aligned_cols=28  Identities=18%  Similarity=0.156  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||++++|||.++.++||+...+
T Consensus        18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~   45 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSSDRSVKIFDVRNG   45 (316)
T ss_dssp             EEEECGGGCEEEEEETTTEEEEEEEETT
T ss_pred             EeeEcCCCCEEEEEeCCCeEEEEEecCC
Confidence            4799999999999999999999997643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.86  E-value=0.028  Score=42.01  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      -++||+|+++++|||.++.++|||..+
T Consensus        69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~   95 (354)
T 2pbi_B           69 CMDWCKDKRRIVSSSQDGKVIVWDSFT   95 (354)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            469999999999999999999999654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.83  E-value=0.016  Score=42.68  Aligned_cols=24  Identities=21%  Similarity=0.526  Sum_probs=22.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      .++||+||..++|||+++.++||+
T Consensus       317 ~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          317 CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCEEEEEcCCccEEecC
Confidence            468999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.79  E-value=0.033  Score=41.00  Aligned_cols=28  Identities=11%  Similarity=0.363  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||+.++|||.++.++||+....
T Consensus        60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~   87 (340)
T 1got_B           60 AMHWGTDSRLLLSASQDGKLIIWDSYTT   87 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4699999999999999999999997543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.035  Score=39.40  Aligned_cols=28  Identities=11%  Similarity=0.181  Sum_probs=24.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||+.++||+.++.++||+....
T Consensus        37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~   64 (369)
T 3zwl_B           37 QVKYNKEGDLLFSCSKDSSASVWYSLNG   64 (369)
T ss_dssp             EEEECTTSCEEEEEESSSCEEEEETTTC
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEeCCCc
Confidence            4699999999999999999999997643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.023  Score=41.87  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=24.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|||||++++|||.++.++||+..
T Consensus       112 ~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X          112 GVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEecc
Confidence            47999999999999999999999973

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.62  E-value=0.027  Score=40.05  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++||+||+.++|||.++.++||+..
T Consensus       340 ~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          340 QTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            47999999999999999999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=94.60  E-value=0.034  Score=39.35  Aligned_cols=28  Identities=18%  Similarity=0.102  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||+.++|||.++.++|||....
T Consensus       220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          220 TVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            3689999999999999999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.59  E-value=0.051  Score=39.71  Aligned_cols=28  Identities=18%  Similarity=0.317  Sum_probs=25.1

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      +.++|||||..++|||.++.++||+...
T Consensus       266 ~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          266 WHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            3589999999999999999999999653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.57  E-value=0.025  Score=43.13  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||.+++|||.++.++||+....
T Consensus       301 ~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          301 AACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             ECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            4689999999999999999999997653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.48  E-value=0.042  Score=40.68  Aligned_cols=28  Identities=14%  Similarity=0.299  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||+.++|||.++.++||+....
T Consensus       110 ~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A          110 SVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            4699999999999999999999997643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.36  E-value=0.036  Score=41.59  Aligned_cols=28  Identities=11%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++|||....
T Consensus       144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~  171 (357)
T 4g56_B          144 TLSVFSDGTQAVSGGKDFSVKVWDLSQK  171 (357)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            4689999999999999999999998653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.33  E-value=0.031  Score=41.09  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=24.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|||||++++|||.++.++|||..
T Consensus       218 ~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          218 HLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECC
Confidence            46899999999999999999999973

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.31  E-value=0.034  Score=40.16  Aligned_cols=29  Identities=7%  Similarity=-0.030  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++|++||.+++|||.++.++||+.....
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            36999999999999999999999987643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.31  E-value=0.039  Score=40.78  Aligned_cols=28  Identities=14%  Similarity=0.387  Sum_probs=25.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++|||...+
T Consensus       169 ~~~~spdg~~lasg~~dg~i~iwd~~~~  196 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAIDGIINIFDIATG  196 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            4699999999999999999999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.039  Score=39.41  Aligned_cols=27  Identities=11%  Similarity=0.145  Sum_probs=24.5

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||++++||+.++.++||+...
T Consensus        16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~   42 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSDKTIKIFEVEG   42 (379)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             EEEEcCCCCEEEEEECCCcEEEEecCC
Confidence            368999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.27  E-value=0.043  Score=40.56  Aligned_cols=27  Identities=15%  Similarity=0.409  Sum_probs=24.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||..++|||.++.++|||...
T Consensus       211 ~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          211 SLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             EEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            479999999999999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.27  E-value=0.033  Score=41.76  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=23.7

Q ss_pred             eeEEcC-CCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSG-TDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sg-d~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||| |++.++|||+++.++||+...
T Consensus       316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          316 GVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            479998 899999999999999999743

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.24  E-value=0.031  Score=41.12  Aligned_cols=26  Identities=15%  Similarity=0.423  Sum_probs=24.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|||||..++|||.++.++||+..
T Consensus       314 ~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          314 SLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCCeEEEecCCceEEEEEEE
Confidence            57999999999999999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.23  E-value=0.041  Score=39.08  Aligned_cols=28  Identities=7%  Similarity=0.180  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+|||+.++||+.++.++||+....
T Consensus       256 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          256 SIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             EEEEcCCCCEEEEecCCceEEEEcCccH
Confidence            4699999999999999999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.22  E-value=0.043  Score=39.21  Aligned_cols=27  Identities=11%  Similarity=0.273  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||+.++|||.++.++||+...
T Consensus        28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~   54 (312)
T 4ery_A           28 SVKFSPNGEWLASSSADKLIKIWGAYD   54 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEECCCCCEEEEeeCCCeEEEEeCCC
Confidence            469999999999999999999999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.17  E-value=0.049  Score=40.66  Aligned_cols=27  Identities=22%  Similarity=0.350  Sum_probs=24.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||++++|||.++.++||+...
T Consensus       245 ~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          245 DMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEEccC
Confidence            479999999999999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.033  Score=40.95  Aligned_cols=26  Identities=19%  Similarity=0.588  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|+||+..++|||+++.++||+..
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECC
Confidence            46899999999999999999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=94.05  E-value=0.037  Score=39.31  Aligned_cols=27  Identities=15%  Similarity=0.335  Sum_probs=24.3

Q ss_pred             eeEEcCCCCeEE-ecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIM-TGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~-TGSYnn~F~ifd~~~   55 (107)
                      .++||+||+.++ |||+++.++||+...
T Consensus       326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             EEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            469999999999 899999999999754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.03  E-value=0.066  Score=37.93  Aligned_cols=28  Identities=18%  Similarity=0.157  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++|+++++|||.++.++||+....
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           79 SIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            4699999999999999999999997654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.97  E-value=0.066  Score=38.23  Aligned_cols=28  Identities=18%  Similarity=0.497  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++||+.++|||.++.++||+....
T Consensus        70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           70 DVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            4699999999999999999999997653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.90  E-value=0.044  Score=39.57  Aligned_cols=27  Identities=11%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      ..++|||||+.++|||.++.++||+..
T Consensus       258 ~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          258 WRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            357999999999999999999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.88  E-value=0.029  Score=40.80  Aligned_cols=28  Identities=11%  Similarity=0.043  Sum_probs=24.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++||+....
T Consensus       210 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          210 AVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4699999999999999999999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.065  Score=38.75  Aligned_cols=27  Identities=26%  Similarity=0.562  Sum_probs=24.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||+.++||+.++.++||+..+
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~  139 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWNKTG  139 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            458999999999999999999999544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.86  E-value=0.053  Score=39.26  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+|++..++|||.++.++|||..+.
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            3689999999999999999999997653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.84  E-value=0.06  Score=38.85  Aligned_cols=28  Identities=11%  Similarity=0.217  Sum_probs=25.4

Q ss_pred             eeEEcC-CCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSG-TDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sg-d~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||| ||+.++||+.++.++||+....
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~   76 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENS   76 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCC
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCC
Confidence            469999 9999999999999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=93.83  E-value=0.098  Score=36.64  Aligned_cols=29  Identities=3%  Similarity=0.052  Sum_probs=25.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++|++||++++||+.++.++||+.....
T Consensus       270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            46999999999999999999999987644

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.81  E-value=0.07  Score=40.64  Aligned_cols=27  Identities=11%  Similarity=0.097  Sum_probs=23.9

Q ss_pred             eeEEcC-CCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSG-TDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sg-d~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||| |+..++|||+++.++|||..+
T Consensus       169 ~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          169 GLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             EEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             EEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            468997 789999999999999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.78  E-value=0.029  Score=40.85  Aligned_cols=28  Identities=11%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++||+..+.
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~   43 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGN   43 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETT
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCC
Confidence            4699999999999999999999998653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=93.73  E-value=0.071  Score=39.23  Aligned_cols=28  Identities=7%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||..++|||.++.++||+....
T Consensus       144 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~  171 (420)
T 3vl1_A          144 KLKFFPSGEALISSSQDMQLKIWSVKDG  171 (420)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4699999999999999999999998643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.72  E-value=0.045  Score=44.42  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=23.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++|||||++++|||.++.++||+..
T Consensus       667 ~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          667 SLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            46899999999999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.68  E-value=0.064  Score=39.03  Aligned_cols=28  Identities=11%  Similarity=0.394  Sum_probs=25.5

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++||.+++|||.++.++||+....
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            5799999999999999999999998654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.62  E-value=0.081  Score=37.88  Aligned_cols=29  Identities=10%  Similarity=0.250  Sum_probs=25.8

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||+||+.+++|+.++.++||+..+.
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~   40 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEKSGN   40 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCC
Confidence            35799999999999999999999997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.42  E-value=0.058  Score=39.01  Aligned_cols=26  Identities=8%  Similarity=0.041  Sum_probs=24.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      .++||+||+++++|+.++.++||+..
T Consensus       399 ~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          399 DLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEccCCCceEEEEecCceEEEEeec
Confidence            57999999999999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.41  E-value=0.11  Score=38.12  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=25.2

Q ss_pred             eeEEcCCC-CeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTD-SAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~-~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++|| +.++|||.++.++||+..+.
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQ  106 (383)
T ss_dssp             EEEECSSCTTEEEEEEBTSCEEEEETTST
T ss_pred             EEEECCCCCCEEEEEcCCCeEEEEeCCCc
Confidence            46999999 99999999999999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.29  E-value=0.043  Score=47.16  Aligned_cols=27  Identities=19%  Similarity=-0.023  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .|+|||||..+++||.++..+||++++
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~  116 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK  116 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence            589999999999999999999999543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.066  Score=38.19  Aligned_cols=28  Identities=11%  Similarity=0.246  Sum_probs=25.1

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      ..++|||||++++||+.++.++||+...
T Consensus       260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          260 WRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            3569999999999999999999999763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.00  E-value=0.089  Score=39.37  Aligned_cols=28  Identities=7%  Similarity=0.090  Sum_probs=24.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||..++|||.++.++||+...+
T Consensus       354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          354 YSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             EEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4699999999999999999999998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.92  E-value=0.075  Score=39.67  Aligned_cols=27  Identities=15%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             eeEEcC-CCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSG-TDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sg-d~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+ ||..++|||.++.++||+...
T Consensus        68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~   95 (437)
T 3gre_A           68 SSAVSPGETPYLITGSDQGVIKIWNLKE   95 (437)
T ss_dssp             EEEEECSSSCEEEEEETTSEEEEEEHHH
T ss_pred             EEEECCCCCCEEEEecCCceEEEeECcc
Confidence            468999 999999999999999999754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.90  E-value=0.094  Score=38.56  Aligned_cols=28  Identities=7%  Similarity=0.242  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+|||+.++|||.++.++|||....
T Consensus       186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          186 DIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            4699999999999999999999997654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=92.87  E-value=0.12  Score=36.73  Aligned_cols=28  Identities=11%  Similarity=0.245  Sum_probs=24.9

Q ss_pred             eeEEcC-CCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSG-TDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sg-d~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+| ++..++||++++.++||+....
T Consensus       120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A          120 ELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            468999 9999999999999999998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.84  E-value=0.094  Score=39.04  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++||+.++|||.++.++|||....
T Consensus       181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          181 SVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            4699999999999999999999997653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=92.79  E-value=0.094  Score=42.54  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||+.++|||.++.++|||....
T Consensus       435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~  462 (694)
T 3dm0_A          435 DVVLSSDGQFALSGSWDGELRLWDLAAG  462 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4799999999999999999999997643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.71  E-value=0.11  Score=38.79  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||.++++|+.++.++||+....
T Consensus       139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A          139 SVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            5699999999999999999999997653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.63  E-value=0.1  Score=39.70  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|+|++..++|||.++.++|||...+
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~  140 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETG  140 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            3589999999999999999999997653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.62  E-value=0.11  Score=39.03  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++|+|||..++|||.++.++|||....
T Consensus       169 ~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            35799999999999999999999997653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.60  E-value=0.15  Score=35.66  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=26.8

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCcc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKRD   58 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~~   58 (107)
                      ..++||+||..+++|+.++.+++|+.....-
T Consensus       228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            3579999999999999999999999876543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.57  E-value=0.12  Score=39.26  Aligned_cols=28  Identities=14%  Similarity=0.214  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+|+|.+++|||.++.+++||...+
T Consensus       197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          197 SVSIMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            4689999999999999999999997653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=92.48  E-value=0.11  Score=37.16  Aligned_cols=28  Identities=25%  Similarity=0.261  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++||..++|||.++.++||+....
T Consensus       207 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          207 GVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            4699999999999999999999998643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.47  E-value=0.12  Score=38.59  Aligned_cols=28  Identities=11%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||++..++|||.++.++|||....
T Consensus       219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          219 SICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            3589999999999999999999997653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.45  E-value=0.09  Score=45.18  Aligned_cols=28  Identities=18%  Similarity=0.376  Sum_probs=25.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||+.++|||-++.++||+..++
T Consensus       134 svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A          134 CFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            5799999999999999999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=92.41  E-value=0.1  Score=37.06  Aligned_cols=30  Identities=10%  Similarity=-0.031  Sum_probs=26.1

Q ss_pred             eeEEcCCCC-eEEecccCCeEEEeec-CCCcc
Q psy13887         29 EVCWSGTDS-AIMTGSYNNFFRMFDR-INKRD   58 (107)
Q Consensus        29 ec~~sgd~~-~v~TGSYnn~F~ifd~-~~~~~   58 (107)
                      .++|++|++ .+++|+.++.+++|+. .+...
T Consensus        61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~   92 (342)
T 1yfq_A           61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             EEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence            469999999 9999999999999998 65443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.31  E-value=0.16  Score=37.05  Aligned_cols=28  Identities=11%  Similarity=0.106  Sum_probs=25.4

Q ss_pred             eeEEcCCC-CeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTD-SAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~-~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||||+ ..++|||.++.++||+....
T Consensus       310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          310 KTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             CEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             EEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            57999999 89999999999999998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=92.06  E-value=0.16  Score=35.92  Aligned_cols=30  Identities=20%  Similarity=0.343  Sum_probs=24.5

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      |.++||+++..+++|+.++.+++||.....
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMA  201 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence            344589999999999999999999987643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.05  E-value=0.13  Score=41.41  Aligned_cols=28  Identities=11%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|||||..++||++++.++||+..++
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~   45 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEIWNYETQ   45 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            3699999999999999999999997543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.03  E-value=0.21  Score=38.43  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=25.6

Q ss_pred             eeEEcCCCCeEEecccCC---eEEEeecCCCcc
Q psy13887         29 EVCWSGTDSAIMTGSYNN---FFRMFDRINKRD   58 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn---~F~ifd~~~~~~   58 (107)
                      .++|||||++|+++|+.+   .+.+||..+++.
T Consensus       183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~  215 (415)
T 2hqs_A          183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAV  215 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE
Confidence            479999999999999986   999999876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=91.95  E-value=0.15  Score=37.12  Aligned_cols=29  Identities=7%  Similarity=0.327  Sum_probs=25.5

Q ss_pred             eeeEEcC-CCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSG-TDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sg-d~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||| |+..++|||.++.++||+....
T Consensus       266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             EEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             eEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            3579999 9999999999999999997653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=91.87  E-value=0.21  Score=36.53  Aligned_cols=28  Identities=14%  Similarity=0.019  Sum_probs=24.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+|+..++||+.++.+++||..+.
T Consensus       168 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~  195 (383)
T 3ei3_B          168 CVDVSVSRQMLATGDSTGRLLLLGLDGH  195 (383)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred             EEEECCCCCEEEEECCCCCEEEEECCCC
Confidence            4689999999999999999999997543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=91.81  E-value=0.18  Score=38.37  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~   54 (107)
                      .++|||||+.+ +|||.++.++||+..
T Consensus       107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~  133 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSDKSLLVFDVD  133 (450)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEECc
Confidence            46899999995 999999999999987

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=91.76  E-value=0.15  Score=39.10  Aligned_cols=28  Identities=14%  Similarity=0.222  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++||+.++.++||+....
T Consensus       493 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~  520 (615)
T 1pgu_A          493 YISISPSETYIAAGDVMGKILLYDLQSR  520 (615)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence            4699999999999999999999998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=91.60  E-value=0.13  Score=37.33  Aligned_cols=27  Identities=11%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             eeEEcCCC----------CeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTD----------SAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~----------~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|++||          ..++|||.++.++||+..+
T Consensus       359 ~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          359 DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            57999999          7999999999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=91.58  E-value=0.17  Score=43.71  Aligned_cols=30  Identities=13%  Similarity=0.139  Sum_probs=26.4

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      ..++|||||.+++|||.++.++|||...++
T Consensus       215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            357999999999999999999999986543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=91.55  E-value=0.19  Score=37.82  Aligned_cols=28  Identities=14%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|++||..++|||.++.++|||...+
T Consensus       315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          315 STIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            4799999999999999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.12  E-value=0.19  Score=34.88  Aligned_cols=27  Identities=11%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|+||| .++|||.++.++||+....
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            46899999 7999999999999997654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.06  E-value=0.17  Score=35.11  Aligned_cols=27  Identities=11%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|++|+..+++|+.++.+++|+...
T Consensus        64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~   90 (313)
T 3odt_A           64 SVCYDSEKELLLFGGKDTMINGVPLFA   90 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEeee
Confidence            469999999999999999999998754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=90.98  E-value=0.22  Score=37.02  Aligned_cols=29  Identities=17%  Similarity=0.446  Sum_probs=25.6

Q ss_pred             eeeEEcC-CCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSG-TDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sg-d~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++|++ ++..++|||.++.++||+....
T Consensus        85 ~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            3479999 9999999999999999997653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.83  E-value=0.23  Score=36.25  Aligned_cols=29  Identities=0%  Similarity=-0.127  Sum_probs=24.6

Q ss_pred             eeEEcC--CCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSG--TDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sg--d~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++|+|  ++.+++|||.++.++|||.....
T Consensus       130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~  160 (343)
T 3lrv_A          130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDS  160 (343)
T ss_dssp             EEECCC---CCEEEEEETTCCEEEEESSSSC
T ss_pred             EEEcCCCCCCCEEEEEeCCCcEEEEECCCCc
Confidence            368999  99999999999999999987543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.35  E-value=0.27  Score=42.06  Aligned_cols=28  Identities=14%  Similarity=0.323  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++||+||+.++|||.++.++||+..++
T Consensus       620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~  647 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGADKTLQVFKAETG  647 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            4699999999999999999999998654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=90.31  E-value=0.2  Score=43.16  Aligned_cols=27  Identities=4%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      -++|||||+.++|||+++.++||+..+
T Consensus        22 ~lafspdg~~lAsgs~Dg~I~lw~~~~   48 (902)
T 2oaj_A           22 AAAFDFTQNLLAIATVTGEVHIYGQQQ   48 (902)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEECSTT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            469999999999999999999998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.23  E-value=0.11  Score=39.27  Aligned_cols=27  Identities=4%  Similarity=0.097  Sum_probs=24.0

Q ss_pred             eeEEcC--------CCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSG--------TDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sg--------d~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||        ||+.++|||.++.+||||...
T Consensus       141 ~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          141 DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             EEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            478987        999999999999999999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.15  E-value=0.19  Score=38.00  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             eeeEEcCCCC-eEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDS-AIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~-~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++|+|++. .++|||.++.++|||....
T Consensus       190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          190 ISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             EEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            3579999985 7999999999999997643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=90.15  E-value=0.38  Score=33.68  Aligned_cols=29  Identities=17%  Similarity=0.145  Sum_probs=25.3

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||+||+++++++.++.++||+..+.
T Consensus       283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          283 YSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             CEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             eeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            35799999999999999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=90.09  E-value=0.24  Score=37.63  Aligned_cols=27  Identities=15%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             eeeEEcCCCC-eEEecccCCeEEEeecC
Q psy13887         28 FEVCWSGTDS-AIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        28 Fec~~sgd~~-~v~TGSYnn~F~ifd~~   54 (107)
                      ..++|+|++. .++|||++|.++||+..
T Consensus       382 ~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          382 SDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            4579999999 99999999999999975

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=89.46  E-value=0.22  Score=38.99  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=23.8

Q ss_pred             eeEEcCCCCeEE----ecccCCeEEEeecC
Q psy13887         29 EVCWSGTDSAIM----TGSYNNFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~----TGSYnn~F~ifd~~   54 (107)
                      .++||+||++++    |||.++.++|||..
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~  126 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVR  126 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHH
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEcc
Confidence            469999999999    99999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=89.20  E-value=0.16  Score=41.46  Aligned_cols=27  Identities=11%  Similarity=0.124  Sum_probs=24.5

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRI   54 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~   54 (107)
                      ..++|||||..++|||.++.++||+..
T Consensus       401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          401 TAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             EEEEeCCCCCeEEEEECCCEEEEEech
Confidence            357999999999999999999999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=89.20  E-value=0.47  Score=32.14  Aligned_cols=26  Identities=12%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||+++++++ ++.+.+|+..+
T Consensus        46 ~~~~spdg~~l~~~~-~~~i~~~d~~~   71 (297)
T 2ojh_A           46 APNWSPDGKYLLLNS-EGLLYRLSLAG   71 (297)
T ss_dssp             EEEECTTSSEEEEEE-TTEEEEEESSS
T ss_pred             eeEECCCCCEEEEEc-CCeEEEEeCCC
Confidence            469999999999998 77899999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=89.13  E-value=0.23  Score=41.33  Aligned_cols=27  Identities=11%  Similarity=0.145  Sum_probs=24.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||+.++|||+++.++||+..+
T Consensus        14 ~l~~s~dg~~latg~~dg~I~vwd~~~   40 (753)
T 3jro_A           14 DAVLDYYGKRLATCSSDKTIKIFEVEG   40 (753)
T ss_dssp             EECCCSSSCCEEEEETTTEEEEEEEET
T ss_pred             EEEECCCCCeEEEEECCCcEEEEecCC
Confidence            368999999999999999999999763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.01  E-value=0.38  Score=38.75  Aligned_cols=27  Identities=15%  Similarity=0.274  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|+|||..++|||.++.++||+..+
T Consensus       233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          233 FAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            458999999999999999999999865

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.97  E-value=0.38  Score=41.16  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=25.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||.++.++|||..++
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            4799999999999999999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=88.66  E-value=0.41  Score=36.38  Aligned_cols=28  Identities=11%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++|| ||.+++|||.++.++|||...+.
T Consensus       246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          246 SICCG-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             EEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred             EEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            46999 99999999999999999987543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=88.40  E-value=0.41  Score=36.36  Aligned_cols=28  Identities=11%  Similarity=0.329  Sum_probs=25.7

Q ss_pred             eeeEEcCCCC-eEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDS-AIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~-~v~TGSYnn~F~ifd~~~   55 (107)
                      +.++|++++. .++||++++.++||+...
T Consensus       185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  213 (430)
T 2xyi_A          185 YGLSWNPNLNGYLLSASDDHTICLWDINA  213 (430)
T ss_dssp             CCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred             EEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence            5679999999 999999999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=88.40  E-value=0.45  Score=34.63  Aligned_cols=29  Identities=10%  Similarity=0.170  Sum_probs=25.1

Q ss_pred             eeeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||+||+++ ++++.++.++|||....
T Consensus       247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          247 AGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            357999999988 79999999999998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=88.01  E-value=0.6  Score=37.50  Aligned_cols=30  Identities=7%  Similarity=-0.105  Sum_probs=25.6

Q ss_pred             eeeEEcCCCCeEEeccc-CC-----eEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSY-NN-----FFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSY-nn-----~F~ifd~~~~~   57 (107)
                      ..++|||||++++++|+ ++     .+.+|+..++.
T Consensus        40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~   75 (741)
T 2ecf_A           40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ   75 (741)
T ss_dssp             EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC
T ss_pred             CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc
Confidence            35799999999999999 76     89999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=87.59  E-value=0.61  Score=33.90  Aligned_cols=29  Identities=10%  Similarity=0.164  Sum_probs=24.9

Q ss_pred             eeeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      ..++||+||+++ ++|+.++.+++||..+.
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~   64 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence            357999999987 89999999999997653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=87.56  E-value=0.64  Score=35.06  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=23.1

Q ss_pred             EEcCCCCeEEecccCCeEEEeecCC
Q psy13887         31 CWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        31 ~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      |++.||+.++|||+++.++||+..+
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~  162 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNT  162 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSS
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCC
Confidence            8888999999999999999999764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=87.53  E-value=0.52  Score=36.09  Aligned_cols=28  Identities=14%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             eeEEcC----------CCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSG----------TDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sg----------d~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||          ||+.++|||.++.++||+....
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence            469999          9999999999999999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=87.13  E-value=0.35  Score=40.26  Aligned_cols=27  Identities=11%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||.+++|||.++.++||+...
T Consensus       259 ~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          259 RASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            569999999999999999999999763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=86.95  E-value=0.39  Score=36.15  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .|++.+|+.++|||.++.++||+....
T Consensus       123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~  149 (445)
T 2ovr_B          123 TCLQFCGNRIVSGSDDNTLKVWSAVTG  149 (445)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCEEEEEECCCcEEEEECCCC
Confidence            578889999999999999999997643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=85.71  E-value=0.75  Score=37.41  Aligned_cols=28  Identities=7%  Similarity=-0.020  Sum_probs=25.2

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      ..++||||+..+++||.++.+++||...
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence            4589999999999999999999999654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=85.67  E-value=0.97  Score=30.52  Aligned_cols=30  Identities=13%  Similarity=0.055  Sum_probs=23.9

Q ss_pred             eeeEEcCCCCeEEecccC-----------CeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYN-----------NFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYn-----------n~F~ifd~~~~~   57 (107)
                      ..++|||||+++++++..           +.+.+|+..++.
T Consensus       220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            347999999999999986           568888876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=85.55  E-value=0.49  Score=37.24  Aligned_cols=30  Identities=3%  Similarity=0.009  Sum_probs=25.8

Q ss_pred             ceeeEEcCCCCeEEeccc-CCeEEEeecCCC
Q psy13887         27 KFEVCWSGTDSAIMTGSY-NNFFRMFDRINK   56 (107)
Q Consensus        27 KFec~~sgd~~~v~TGSY-nn~F~ifd~~~~   56 (107)
                      -+.+++|+||+.|+++|+ ++..+||+..++
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g   54 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG   54 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETT
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCC
Confidence            467899999999999998 999999986543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=85.52  E-value=0.61  Score=37.69  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=25.4

Q ss_pred             eEEcC---CCCeEEecccCCeEEEeecCCCc-ceeEe
Q psy13887         30 VCWSG---TDSAIMTGSYNNFFRMFDRINKR-DATLE   62 (107)
Q Consensus        30 c~~sg---d~~~v~TGSYnn~F~ifd~~~~~-~~~Le   62 (107)
                      ++||+   |+..+++||+++.++|||..+++ --+|+
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence            35555   77899999999999999987543 34554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=85.32  E-value=0.65  Score=34.82  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ++++++|..+++|| ++.++||+..++
T Consensus       397 ~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          397 TTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             EEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             EEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            58999999999999 999999998654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=84.91  E-value=1  Score=31.70  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=23.9

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||+||+++++++.++.+.|||..+
T Consensus       299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          299 CVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ceEECCCCCEEEEecCCCeEEEEeccc
Confidence            579999999999998899999999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=84.52  E-value=0.86  Score=33.59  Aligned_cols=27  Identities=11%  Similarity=0.149  Sum_probs=22.8

Q ss_pred             eeeEEcCCCCeEEecc-cCCeEEEeecC
Q psy13887         28 FEVCWSGTDSAIMTGS-YNNFFRMFDRI   54 (107)
Q Consensus        28 Fec~~sgd~~~v~TGS-Ynn~F~ifd~~   54 (107)
                      ..++|||||+++++++ .++.++||+.+
T Consensus       404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          404 TGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            3569999999998776 59999999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=84.47  E-value=1.1  Score=32.50  Aligned_cols=29  Identities=14%  Similarity=-0.044  Sum_probs=25.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      ..+|||||++|+.++-+..+.+++..++.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            56899999999999988889999987654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=83.97  E-value=0.86  Score=36.66  Aligned_cols=29  Identities=21%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      ..++|||||+.|+.++ ++.+++|+..++.
T Consensus       113 ~~~~~SPDG~~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A          113 QYLCWSPVGSKLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             CCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             ccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence            3589999999999996 7889999986544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=83.51  E-value=1.4  Score=36.25  Aligned_cols=40  Identities=10%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             hhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         16 CSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        16 cdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      -|++.+.---..|.+.|||||++++++  ++.+++|+..++.
T Consensus         8 ~~~~~~~~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~   47 (740)
T 4a5s_A            8 TDYLKNTYRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN   47 (740)
T ss_dssp             HHHHHTCSCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC
T ss_pred             HHHhcCcccccccccEECCCCcEEEEc--CCcEEEEECCCCc
Confidence            344433222346789999999999997  8999999987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.94  E-value=1.4  Score=31.67  Aligned_cols=29  Identities=10%  Similarity=-0.137  Sum_probs=24.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .+.|||||++|+.++..+.+.+++..++.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            37899999999999999889999977643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=82.68  E-value=0.91  Score=34.21  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ++|  |+.+++|||.++.++||+..+.
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC----
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            455  8899999999999999997653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=82.37  E-value=2.2  Score=30.62  Aligned_cols=27  Identities=7%  Similarity=0.064  Sum_probs=21.9

Q ss_pred             eeEEcCCCCeEEeccc-CCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSY-NNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSY-nn~F~ifd~~~   55 (107)
                      .++|||||+++++++. ++.+.||+.+.
T Consensus       290 ~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          290 DFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            5789999998877766 58999996653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=80.76  E-value=2.1  Score=30.70  Aligned_cols=27  Identities=11%  Similarity=0.097  Sum_probs=22.8

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||+++ ++++-++.+.||+...
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            37899999987 6777899999999763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=80.33  E-value=2.5  Score=29.53  Aligned_cols=26  Identities=8%  Similarity=-0.059  Sum_probs=23.4

Q ss_pred             eeEEcCCCCeEEecccC-CeEEEeecC
Q psy13887         29 EVCWSGTDSAIMTGSYN-NFFRMFDRI   54 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYn-n~F~ifd~~   54 (107)
                      .++|||||+++++++.. +.+.+|+..
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~   68 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIA   68 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEec
Confidence            47899999999999997 899999976

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=80.29  E-value=1.6  Score=35.01  Aligned_cols=28  Identities=7%  Similarity=-0.082  Sum_probs=23.4

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ..++|||||++|++++ ++.+.+|+..++
T Consensus       155 ~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          155 TDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             EEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             ccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            4579999999999998 457899997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.65
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.57
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.54
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.51
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.47
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.38
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.34
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.27
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.14
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.13
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.11
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.01
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.01
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.68
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.46
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.38
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.02
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.26
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.14
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.14
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	92.99
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	92.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	92.58
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.54
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.13
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.0
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	91.31
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	91.15
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	90.45
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	88.77
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	88.55
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	88.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	86.25
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	86.2
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	81.16
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	80.99
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	80.31

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.90  E-value=0.00045  Score=47.23  Aligned_cols=39  Identities=13%  Similarity=0.175  Sum_probs=32.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC-CcceeEeeeccc
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN-KRDATLEAAREI   67 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~-~~~~~LeAsk~~   67 (107)
                      .++|||||+++++|+-++.++||+.+. +...+|+.++.|
T Consensus       319 ~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         319 DLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence            469999999999999999999999875 445667666543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00052  Score=44.72  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=23.7

Q ss_pred             EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         31 CWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        31 ~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      |+++||++++|||+++.++|||..+.
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~   45 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTL   45 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSC
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999999999998653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00042  Score=45.90  Aligned_cols=27  Identities=7%  Similarity=0.126  Sum_probs=24.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||++++|||+++.++||+...
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~iwd~~~   42 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTVYKFDI   42 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEET
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEEccC
Confidence            579999999999999999999999754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.57  E-value=0.001  Score=45.07  Aligned_cols=27  Identities=7%  Similarity=0.156  Sum_probs=24.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||++++|||+++.++|||..+
T Consensus        17 ~l~~s~dg~~l~s~s~Dg~v~vWd~~~   43 (299)
T d1nr0a2          17 ALSSSADGKTLFSADAEGHINSWDIST   43 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            369999999999999999999999764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.54  E-value=0.0011  Score=44.59  Aligned_cols=28  Identities=11%  Similarity=0.349  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||||+.+++|||.++.++|||....
T Consensus        60 ~l~~s~~~~~l~sgs~Dg~v~iWd~~~~   87 (340)
T d1tbga_          60 AMHWGTDSRLLVSASQDGKLIIWDSYTT   87 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEECCCceeeeecccc
Confidence            4689999999999999999999998654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.0011  Score=43.46  Aligned_cols=27  Identities=15%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++||||+..++|||.++.++||+..+
T Consensus        22 ~l~~sp~~~~l~s~s~Dg~i~iWd~~~   48 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASEDATIKVWDYET   48 (317)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTT
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            479999999999999999999999764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.001  Score=43.97  Aligned_cols=28  Identities=7%  Similarity=0.180  Sum_probs=25.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||++..++|||.++.++|||..++
T Consensus       256 ~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         256 SIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eEEecCCccEEEEECCCCEEEEEECCCC
Confidence            4799999999999999999999998754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.38  E-value=0.00094  Score=44.89  Aligned_cols=24  Identities=21%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      .++||+||.+++|||.++.++|||
T Consensus       317 ~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEeCCCCEEEEEccCCEEEEeC
Confidence            368999999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0015  Score=47.15  Aligned_cols=36  Identities=14%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCCcc-eeEeee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRD-ATLEAA   64 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~-~~LeAs   64 (107)
                      .++|||||+.|+|||.++.++|||..+++- -+|++-
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc
Confidence            379999999999999999999999876532 244443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0011  Score=44.03  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=23.8

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .|+++||++++|||+++.++|||..++
T Consensus        21 s~~~~~g~~l~sgs~Dg~i~vWd~~~~   47 (342)
T d2ovrb2          21 TCLQFCGNRIVSGSDDNTLKVWSAVTG   47 (342)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCC
Confidence            368889999999999999999998654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.14  E-value=0.0023  Score=43.16  Aligned_cols=28  Identities=14%  Similarity=0.153  Sum_probs=25.6

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||+++.+|++++.++|||..+.
T Consensus       296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            4799999999999999999999998654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0017  Score=45.48  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=23.2

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeec
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDR   53 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~   53 (107)
                      .|+||+||++++|||.++.++||+.
T Consensus       311 ~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         311 SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            4899999999999999999999973

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.11  E-value=0.0024  Score=45.56  Aligned_cols=27  Identities=11%  Similarity=0.340  Sum_probs=24.6

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      +||||||+.++|||.++.++||+..+.
T Consensus        13 ~~~s~dg~~la~~~~~~~i~iw~~~~~   39 (371)
T d1k8kc_          13 HAWNKDRTQIAICPNNHEVHIYEKSGN   39 (371)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            499999999999999999999997653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.01  E-value=0.0029  Score=44.85  Aligned_cols=28  Identities=14%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|||||++++|||+++.++||+....
T Consensus        63 ~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          63 VAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             EEEEeCCCCeEeccccCceEeeeeeecc
Confidence            3479999999999999999999998754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.01  E-value=0.0025  Score=45.17  Aligned_cols=28  Identities=14%  Similarity=0.361  Sum_probs=25.3

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++||+||++++|||+++.++|||..+.
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            4699999999999999999999997654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0023  Score=41.85  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             eeEEcCCCCeEEecccCCeEEEee
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd   52 (107)
                      .++||+||++++|||.++.++|||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            368999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.76  E-value=0.0054  Score=41.31  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=24.5

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ++|||+|.+++|||.++.++||+....
T Consensus       230 l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         230 VSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccccccceEEEcCCCEEEEEECCCC
Confidence            489999999999999999999997654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.003  Score=42.11  Aligned_cols=27  Identities=33%  Similarity=0.674  Sum_probs=23.8

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .|++.||++++|||.++.++|||..+.
T Consensus        17 tc~~~~~~~l~tgs~Dg~i~vWd~~~~   43 (355)
T d1nexb2          17 TCLQFEDNYVITGADDKMIRVYDSINK   43 (355)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCC
Confidence            468889999999999999999998653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.005  Score=42.66  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=23.5

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++||+||++++||| ++.++||+....
T Consensus        67 ~l~fs~dg~~lasg~-d~~i~iW~~~~~   93 (388)
T d1erja_          67 CVKFSNDGEYLATGC-NKTTQVYRVSDG   93 (388)
T ss_dssp             EEEECTTSSEEEEEC-BSCEEEEETTTC
T ss_pred             EEEECCCCCEEEEEe-CCeEEEEEeccc
Confidence            468999999999999 789999997643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0087  Score=41.73  Aligned_cols=27  Identities=7%  Similarity=0.139  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||++++|||.++.++||+...
T Consensus       102 ~v~~s~dg~~l~s~~~dg~i~iwd~~~  128 (337)
T d1gxra_         102 SCKLLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             EEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred             EEEEcCCCCEEEEeecccccccccccc
Confidence            479999999999999999999999754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0067  Score=41.98  Aligned_cols=28  Identities=29%  Similarity=0.586  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||++++|||+++.++||+....
T Consensus       126 ~l~~s~~~~~l~s~~~dg~v~i~~~~~~  153 (388)
T d1erja_         126 SVCFSPDGKFLATGAEDRLIRIWDIENR  153 (388)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEECCCCCcceeccccccccccccccc
Confidence            4799999999999999999999997643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.02  E-value=0.014  Score=38.99  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=26.3

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      +.++|||||+++++|+.+|.++|||..+.+
T Consensus       283 ~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         283 YSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             CEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            457999999999999999999999987643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.94  E-value=0.011  Score=39.01  Aligned_cols=28  Identities=11%  Similarity=0.185  Sum_probs=24.5

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||+++ +|++.+|.++|||..+.
T Consensus       248 ~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         248 GIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            47999999987 79999999999997654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.32  E-value=0.022  Score=37.90  Aligned_cols=28  Identities=7%  Similarity=-0.111  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      .+++||||+++ ++|++++.+.+||..+.
T Consensus        38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~   66 (337)
T d1pbyb_          38 VPMVAPGGRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            57999999987 79999999999998754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.26  E-value=0.019  Score=40.67  Aligned_cols=28  Identities=21%  Similarity=0.222  Sum_probs=25.4

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      ..++|||||..++|||+++.+++||...
T Consensus       205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         205 HGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EEEEeecccccccccccCCcceEEeeec
Confidence            4579999999999999999999999764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.022  Score=38.00  Aligned_cols=28  Identities=14%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++||+||.++++|+.++.++||+....
T Consensus       167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         167 YISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEEeccCccccccccccccccceeeccc
Confidence            4689999999999999999999997653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.14  E-value=0.033  Score=37.51  Aligned_cols=29  Identities=7%  Similarity=-0.082  Sum_probs=26.3

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      +.++|||||+++++|+.++..++|+..+.
T Consensus        89 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          89 FAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             Eeeeecccccccceecccccccccccccc
Confidence            56799999999999999999999998754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.91  E-value=0.039  Score=40.07  Aligned_cols=30  Identities=13%  Similarity=0.039  Sum_probs=26.5

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      ..+++||||++++++|.++.+++||..+.+
T Consensus        65 ~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          65 HISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            358999999999999999999999987543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.99  E-value=0.041  Score=39.18  Aligned_cols=26  Identities=23%  Similarity=0.093  Sum_probs=23.0

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      ++||+|| .++|||.++.++|||....
T Consensus       190 v~~s~dg-~lasgs~Dg~i~iwd~~~~  215 (393)
T d1sq9a_         190 VDISERG-LIATGFNNGTVQISELSTL  215 (393)
T ss_dssp             EEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred             EEECCCC-EEEEEeCCCcEEEEeeccc
Confidence            6899997 8999999999999997653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.90  E-value=0.057  Score=36.71  Aligned_cols=28  Identities=7%  Similarity=0.020  Sum_probs=24.2

Q ss_pred             eeEEcCCCC--eEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDS--AIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~--~v~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||+  .++||+.++.++|||..++
T Consensus       304 ~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         304 SINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence            468999998  4789999999999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=92.58  E-value=0.062  Score=35.76  Aligned_cols=28  Identities=4%  Similarity=-0.159  Sum_probs=24.7

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      .++|||||+++ ++|++++.+.+||..+.
T Consensus        44 ~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_          44 TAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            67999999987 78899999999998754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.54  E-value=0.071  Score=39.62  Aligned_cols=29  Identities=14%  Similarity=0.007  Sum_probs=26.0

Q ss_pred             eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      +.+++||||++++++|..+.++|||..+.
T Consensus        65 ~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          65 HISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             eEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence            57799999999999999999999997653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.13  E-value=0.082  Score=34.63  Aligned_cols=29  Identities=10%  Similarity=0.164  Sum_probs=24.8

Q ss_pred             eeeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      ..+++||||+++ ++++.++.+++||..+.
T Consensus        35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~   64 (301)
T d1l0qa2          35 MGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (301)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            357999999987 68899999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.00  E-value=0.059  Score=37.53  Aligned_cols=26  Identities=12%  Similarity=0.075  Sum_probs=22.5

Q ss_pred             eEEcC--CCCeEEecccCCeEEEeecCC
Q psy13887         30 VCWSG--TDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        30 c~~sg--d~~~v~TGSYnn~F~ifd~~~   55 (107)
                      ++|||  ||.+|+|||.++.++||+...
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            58986  778999999999999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=91.31  E-value=0.1  Score=35.87  Aligned_cols=29  Identities=3%  Similarity=0.070  Sum_probs=24.7

Q ss_pred             eeEEcCCCCe--EEecccCCeEEEeecCCCc
Q psy13887         29 EVCWSGTDSA--IMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        29 ec~~sgd~~~--v~TGSYnn~F~ifd~~~~~   57 (107)
                      .++||+||++  ++||+-+|.++|||..+++
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            4789999995  5799999999999987653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.051  Score=34.78  Aligned_cols=19  Identities=16%  Similarity=0.244  Sum_probs=17.3

Q ss_pred             CCCCeEEecccCCeEEEee
Q psy13887         34 GTDSAIMTGSYNNFFRMFD   52 (107)
Q Consensus        34 gd~~~v~TGSYnn~F~ifd   52 (107)
                      .|+.+|+|||.++.++|||
T Consensus       275 ~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         275 FDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECSSCEEECCSSSEEEEEC
T ss_pred             EcCCEEEEEecCCEEEEeC
Confidence            3678999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.45  E-value=0.14  Score=35.51  Aligned_cols=28  Identities=18%  Similarity=0.193  Sum_probs=24.1

Q ss_pred             eeEEcCC-CCeEEecccCCeEEEeecCCC
Q psy13887         29 EVCWSGT-DSAIMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd-~~~v~TGSYnn~F~ifd~~~~   56 (107)
                      -++|+|| +..++||+.++.+++||....
T Consensus       210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         210 DVEFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             Eeeeccccceeccccccccceeeeeeccc
Confidence            4689997 688999999999999997654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=88.77  E-value=0.33  Score=32.11  Aligned_cols=29  Identities=3%  Similarity=-0.177  Sum_probs=23.3

Q ss_pred             eeeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      ..++|||||+++ ++++-++.+.+|+....
T Consensus        40 ~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_          40 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            457899999998 56666899999987653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.55  E-value=0.21  Score=34.96  Aligned_cols=27  Identities=4%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             eEEcCCCCe--EEecccCCeEEEeecCCC
Q psy13887         30 VCWSGTDSA--IMTGSYNNFFRMFDRINK   56 (107)
Q Consensus        30 c~~sgd~~~--v~TGSYnn~F~ifd~~~~   56 (107)
                      ++||+||+.  +++++.+|.++|||..++
T Consensus       319 ~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         319 IIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            689999984  679999999999998654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=0.2  Score=32.62  Aligned_cols=28  Identities=14%  Similarity=0.277  Sum_probs=23.6

Q ss_pred             eEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887         30 VCWSGTDSAIMTGSYNNFFRMFDRINKR   57 (107)
Q Consensus        30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~   57 (107)
                      .|++.++..++|||.++.++|||..+++
T Consensus       264 ~~~~~~~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         264 TCLQFNKNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             eecccCCCeeEEEcCCCEEEEEECCCCC
Confidence            4667788899999999999999986543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=86.25  E-value=0.53  Score=31.06  Aligned_cols=27  Identities=4%  Similarity=0.177  Sum_probs=21.1

Q ss_pred             eeEEcCCCCeE-EecccCCeEEEeecCC
Q psy13887         29 EVCWSGTDSAI-MTGSYNNFFRMFDRIN   55 (107)
Q Consensus        29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~   55 (107)
                      .++|||||+++ ++|+-+|.++||+.+.
T Consensus       280 ~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         280 GFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             CEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            36899999985 4566679999997654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.20  E-value=0.33  Score=31.95  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=19.5

Q ss_pred             EcCCCCeEEecccCCeEEEeecCC
Q psy13887         32 WSGTDSAIMTGSYNNFFRMFDRIN   55 (107)
Q Consensus        32 ~sgd~~~v~TGSYnn~F~ifd~~~   55 (107)
                      ...|+.+++|||.++.++||+...
T Consensus       223 ~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         223 EEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSC
T ss_pred             ccCCCCeeEeecCCCeEEEEECCC
Confidence            345678999999999999999643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=81.16  E-value=0.67  Score=31.48  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=22.9

Q ss_pred             eeEEcCCCCeEEeccc----------CCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTGSY----------NNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TGSY----------nn~F~ifd~~~~   56 (107)
                      .+.|||||+++++.++          .+.++|||..+.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~  107 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC
Confidence            4799999999988765          477999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.99  E-value=0.44  Score=34.41  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             eeEEcCCCCeEEec---------ccCCeEEEeecCCC
Q psy13887         29 EVCWSGTDSAIMTG---------SYNNFFRMFDRINK   56 (107)
Q Consensus        29 ec~~sgd~~~v~TG---------SYnn~F~ifd~~~~   56 (107)
                      ...|||||++|+.+         ||...+.|||..++
T Consensus        66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             eeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC
Confidence            56899999999987         67778899998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.31  E-value=0.58  Score=33.55  Aligned_cols=29  Identities=10%  Similarity=-0.045  Sum_probs=23.1

Q ss_pred             eeeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887         28 FEVCWSGTDSAI-MTGSYNNFFRMFDRINK   56 (107)
Q Consensus        28 Fec~~sgd~~~v-~TGSYnn~F~ifd~~~~   56 (107)
                      |.++|||||+++ +++++++.++|||....
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            456789999997 55668899999997754