Psyllid ID: psy13909

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MDRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD
ccHHHHHHHHHHccccHHcccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEEcccccccccccccccccHHHHHHHcccccccccccccEEEEHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccc
ccccEEEEEHHHcccHHHHHHHccHHHHHHHHHHHHcHHHHHHHEEcccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHcccccccEEEEEEEEcccccccccEEEEEccccccccEcccccccccccEEEEEEHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHcccccc
MDRLRIINEIKEQRDVIRKLkdlvppniEIMKKEMDKLKELKSKLCrttnttveehdveyDQVKltlktpkgtrdygpepmvLRKNVLEQIISVFKRhgaqtidtpvclldglfescgvpakQFRTICSSvdkldkwsWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIgdrkkgesvgsvagggrydklvgmfdprqrnvpcvgiSIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD
mdrlriineikeqrdvirklkdlvppnieIMKKEMDKLKELKSKLcrttnttveehdveydqvkltlktpkgtrdygpepmvLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSsvdkldkwswEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAvligdrkkgesvgsvagggrYDKLvgmfdprqrnvPCVGISIGVERIFSLIESKLAAErtklrttevQVYVASAQKNLLEERMRICSYLWKNGINAD
MDRLRIINEIKEQRDVIRKLKDLVPPNieimkkemdklkelksklCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD
**************DVIRKLKDLVPPNIEI**************LCRTTNTTVEEHDVEYDQVKLTLKT*****DYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGI***
*DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAA***KLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINA*
MDRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD
**RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGI***
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MDRLRIINEIKEQRDVIRKLKDLVPPNxxxxxxxxxxxxxxxxxxxxxTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
Q2KI84509 Histidine--tRNA ligase, c yes N/A 0.670 0.432 0.620 9e-74
Q61035509 Histidine--tRNA ligase, c yes N/A 0.670 0.432 0.611 3e-73
P70076519 Histidine--tRNA ligase, c N/A N/A 0.670 0.423 0.581 7e-73
Q5R4R2509 Histidine--tRNA ligase, c yes N/A 0.670 0.432 0.620 8e-73
P12081509 Histidine--tRNA ligase, c yes N/A 0.670 0.432 0.616 2e-72
Q5R5E5506 Probable histidine--tRNA no N/A 0.670 0.434 0.562 2e-69
P49590506 Probable histidine--tRNA no N/A 0.670 0.434 0.562 2e-69
A5D7V9506 Probable histidine--tRNA no N/A 0.670 0.434 0.571 3e-69
Q99KK9505 Probable histidine--tRNA no N/A 0.670 0.435 0.558 1e-66
P07178508 Histidine--tRNA ligase, c N/A N/A 0.670 0.433 0.569 6e-64
>sp|Q2KI84|SYHC_BOVIN Histidine--tRNA ligase, cytoplasmic OS=Bos taurus GN=HARS PE=2 SV=1 Back     alignment and function desciption
 Score =  277 bits (708), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 139/224 (62%), Positives = 168/224 (75%), Gaps = 4/224 (1%)

Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
           +LDG+F  CGVP  +FRTICSSVDKLDK SWE+V+ EM  EKGL+  +AD+IG YVQQHG
Sbjct: 216 ILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 275

Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
              LVE+ +QD  L  +K AL GL  +KLL  Y  ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 276 GVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVI 335

Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
           YEAVL+    + GE    VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E 
Sbjct: 336 YEAVLLQPPARAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 395

Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
           +L A   K+RTTE QV VASAQK LLEER+++ S LW  GI A+
Sbjct: 396 RLEALEEKVRTTETQVLVASAQKKLLEERLKLISELWDAGIKAE 439

Bos taurus (taxid: 9913)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q61035|SYHC_MOUSE Histidine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Hars PE=2 SV=2 Back     alignment and function description
>sp|P70076|SYHC_TAKRU Histidine--tRNA ligase, cytoplasmic OS=Takifugu rubripes GN=hars PE=3 SV=1 Back     alignment and function description
>sp|Q5R4R2|SYHC_PONAB Histidine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=HARS PE=2 SV=1 Back     alignment and function description
>sp|P12081|SYHC_HUMAN Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2 Back     alignment and function description
>sp|Q5R5E5|SYHM_PONAB Probable histidine--tRNA ligase, mitochondrial OS=Pongo abelii GN=HARS2 PE=2 SV=1 Back     alignment and function description
>sp|P49590|SYHM_HUMAN Probable histidine--tRNA ligase, mitochondrial OS=Homo sapiens GN=HARS2 PE=1 SV=1 Back     alignment and function description
>sp|A5D7V9|SYHM_BOVIN Probable histidine--tRNA ligase, mitochondrial OS=Bos taurus GN=HARS2 PE=2 SV=1 Back     alignment and function description
>sp|Q99KK9|SYHM_MOUSE Probable histidine--tRNA ligase, mitochondrial OS=Mus musculus GN=Hars2 PE=2 SV=1 Back     alignment and function description
>sp|P07178|SYHC_MESAU Histidine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=HARS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
426229699 435 PREDICTED: histidine--tRNA ligase, cytop 0.960 0.724 0.488 4e-85
338713202 435 PREDICTED: histidyl-tRNA synthetase, cyt 0.807 0.609 0.543 2e-84
410948343 435 PREDICTED: histidine--tRNA ligase, cytop 0.807 0.609 0.543 4e-84
395817425 435 PREDICTED: histidine--tRNA ligase, cytop 0.881 0.664 0.508 8e-84
194375508 435 unnamed protein product [Homo sapiens] 0.935 0.705 0.490 2e-83
332375783 518 unknown [Dendroctonus ponderosae] 0.655 0.415 0.654 5e-80
390459294 433 PREDICTED: histidine--tRNA ligase, cytop 0.929 0.704 0.485 2e-79
402872754422 PREDICTED: probable histidine--tRNA liga 0.804 0.625 0.480 3e-77
270006157 605 hypothetical protein TcasGA2_TC008324 [T 0.670 0.363 0.626 5e-77
189236717 514 PREDICTED: similar to Histidyl-tRNA synt 0.670 0.428 0.616 2e-75
>gi|426229699|ref|XP_004008925.1| PREDICTED: histidine--tRNA ligase, cytoplasmic isoform 5 [Ovis aries] Back     alignment and taxonomy information
 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/375 (48%), Positives = 229/375 (61%), Gaps = 60/375 (16%)

Query: 2   DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYD 61
           DR  + + ++ Q + +R LK     + E +++E+ KL +LK++L                
Sbjct: 3   DRAALEDLVRVQGERVRGLKQQ-KASAEQIEEEVAKLLKLKAQLGPDEGKP--------- 52

Query: 62  QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV-------------- 107
             K  LKTPKGTRDY P  M +R+ V + IIS FKRHGA+ IDTPV              
Sbjct: 53  --KFVLKTPKGTRDYSPRQMAVREKVFDVIISCFKRHGAEVIDTPVFELKDFDIAGQFDP 110

Query: 108 ------CL------------------------LDGLFESCGVPAKQFRTICSSVDKLDKW 137
                 CL                        LDG+F  CGVP  +FRTICSSVDKLDK 
Sbjct: 111 MLPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDKLDKV 170

Query: 138 SWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKL 197
           SWE+V+ EM  EKGL+  +AD+IG YVQQHG   LVE+ +QD  L  +K AL GL  +KL
Sbjct: 171 SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKL 230

Query: 198 LLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLI-GDRKKGE---SVGSVAGGGRYD 253
           L  Y  ++ + DK+ FDLSLARGLDYYTG+IYEAVL+    + GE    VGSVA GGRYD
Sbjct: 231 LFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQPPARAGEEPLGVGSVAAGGRYD 290

Query: 254 KLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEER 313
            LVGMFDP+ R VPCVG+SIGVERIFS++E +L A   K+RTTE QV VASAQK LLEER
Sbjct: 291 GLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEER 350

Query: 314 MRICSYLWKNGINAD 328
           +++ S LW  GI A+
Sbjct: 351 LKLVSELWDAGIKAE 365

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Order:

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|338713202|ref|XP_003362850.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like isoform 2 [Equus caballus] Back     alignment and taxonomy information
>gi|410948343|ref|XP_003980900.1| PREDICTED: histidine--tRNA ligase, cytoplasmic isoform 6 [Felis catus] Back     alignment and taxonomy information
>gi|395817425|ref|XP_003782171.1| PREDICTED: histidine--tRNA ligase, cytoplasmic isoform 4 [Otolemur garnettii] Back     alignment and taxonomy information
>gi|194375508|dbj|BAG56699.1| unnamed protein product [Homo sapiens] Back     alignment and taxonomy information
>gi|332375783|gb|AEE63032.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|390459294|ref|XP_003732264.1| PREDICTED: histidine--tRNA ligase, cytoplasmic isoform 2 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|402872754|ref|XP_003900269.1| PREDICTED: probable histidine--tRNA ligase, mitochondrial isoform 3 [Papio anubis] Back     alignment and taxonomy information
>gi|270006157|gb|EFA02605.1| hypothetical protein TcasGA2_TC008324 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189236717|ref|XP_974715.2| PREDICTED: similar to Histidyl-tRNA synthetase CG6335-PA [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P12081SYHC_HUMAN6, ., 1, ., 1, ., 2, 10.61600.67070.4322yesN/A
Q5R4R2SYHC_PONAB6, ., 1, ., 1, ., 2, 10.62050.67070.4322yesN/A
Q61035SYHC_MOUSE6, ., 1, ., 1, ., 2, 10.61160.67070.4322yesN/A
Q2KI84SYHC_BOVIN6, ., 1, ., 1, ., 2, 10.62050.67070.4322yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.766
4th Layer6.1.1.210.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
PLN02972763 PLN02972, PLN02972, Histidyl-tRNA synthetase 4e-68
COG0124429 COG0124, HisS, Histidyl-tRNA synthetase [Translati 2e-38
cd00773261 cd00773, HisRS-like_core, Class II Histidinyl-tRNA 7e-31
TIGR00442397 TIGR00442, hisS, histidyl-tRNA synthetase 6e-27
PRK00037412 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed 2e-25
PRK12420423 PRK12420, PRK12420, histidyl-tRNA synthetase; Prov 1e-24
PLN02530487 PLN02530, PLN02530, histidine-tRNA ligase 1e-18
PRK12292391 PRK12292, hisZ, ATP phosphoribosyltransferase regu 2e-16
TIGR00443313 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltran 2e-15
pfam13393308 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase 2e-15
PLN02972 763 PLN02972, PLN02972, Histidyl-tRNA synthetase 2e-11
PRK12295373 PRK12295, hisZ, ATP phosphoribosyltransferase regu 2e-11
COG3705390 COG3705, HisZ, ATP phosphoribosyltransferase invol 4e-08
COG0124 429 COG0124, HisS, Histidyl-tRNA synthetase [Translati 2e-07
PRK00037 412 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed 5e-07
TIGR00442 397 TIGR00442, hisS, histidyl-tRNA synthetase 7e-07
CHL00201430 CHL00201, syh, histidine-tRNA synthetase; Provisio 6e-06
cd0085991 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon 5e-04
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase Back     alignment and domain information 
 Score =  226 bits (577), Expect = 4e-68
 Identities = 103/222 (46%), Positives = 143/222 (64%), Gaps = 9/222 (4%)

Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
           LLDG+ E CGVP ++FRTICSS+DKLDK S+E V+ EM +EKGLS   ADKIG +V++ G
Sbjct: 485 LLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERG 544

Query: 169 H-KELVEKFMQDDL-LKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
              EL+ K  Q+      + S+   L  ++++    +  +   K++FDLSLARGLDYYTG
Sbjct: 545 PPLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTG 604

Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKL 286
           +IYEAV      KG  VGS+A GGRYD LVGMF  +Q  VP VG+S+G+ER+F+++E + 
Sbjct: 605 VIYEAVF-----KGAQVGSIAAGGRYDNLVGMFSGKQ--VPAVGVSLGIERVFAIMEQQE 657

Query: 287 AAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
             +   +R TE +V V+    + L     + S LW  GI A+
Sbjct: 658 EEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAE 699

Length = 763
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase Back     alignment and domain information
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|226228 COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|164576 CHL00201, syh, histidine-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
KOG1936|consensus518 100.0
PLN02972763 Histidyl-tRNA synthetase 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
PLN02530487 histidine-tRNA ligase 100.0
PRK12420423 histidyl-tRNA synthetase; Provisional 100.0
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 100.0
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 100.0
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 99.98
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 99.96
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.96
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 99.86
KOG1035|consensus1351 99.83
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 99.79
PRK12444639 threonyl-tRNA synthetase; Reviewed 99.68
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 99.41
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 99.3
PRK04173456 glycyl-tRNA synthetase; Provisional 99.25
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 99.03
PLN02908 686 threonyl-tRNA synthetase 98.86
cd0093845 HisRS_RNA HisRS_RNA binding domain. This short RNA 98.8
cd0093945 MetRS_RNA MetRS_RNA binding domain. This short RNA 98.59
PF0045856 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A c 98.44
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 98.31
PRK12325 439 prolyl-tRNA synthetase; Provisional 98.28
PRK08661 477 prolyl-tRNA synthetase; Provisional 97.93
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 97.46
cd0093650 WEPRS_RNA WEPRS_RNA binding domain. This short RNA 97.19
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 97.16
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 97.13
cd0120042 WHEPGMRS_RNA EPRS-like_RNA binding domain. This sh 97.1
PLN02837 614 threonine-tRNA ligase 97.02
PRK09194 565 prolyl-tRNA synthetase; Provisional 96.96
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 96.96
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 96.92
PLN02734 684 glycyl-tRNA synthetase 96.67
PRK03991 613 threonyl-tRNA synthetase; Validated 96.58
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 96.29
PLN02850530 aspartate-tRNA ligase 96.12
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 95.99
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 94.96
PTZ00401550 aspartyl-tRNA synthetase; Provisional 94.91
PRK09194565 prolyl-tRNA synthetase; Provisional 94.81
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 94.49
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 94.01
cd0093551 GlyRS_RNA GlyRS_RNA binding domain. This short RNA 93.99
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 93.94
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 93.44
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 93.26
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 92.53
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 92.5
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 91.25
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 91.04
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 88.73
PRK06462335 asparagine synthetase A; Reviewed 87.23
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 85.29
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 84.53
PF15640132 Tox-MPTase4: Metallopeptidase toxin 4 83.18
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 81.99
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 80.7
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 80.46
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 80.46
PLN02532 633 asparagine-tRNA synthetase 80.4
>KOG1936|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-83  Score=612.07  Aligned_cols=316  Identities=53%  Similarity=0.840  Sum_probs=297.0

Q ss_pred             hHHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCccccccccccccccceeCCCCCccCCchhHH
Q psy13909          3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMV   82 (328)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkGtrD~~p~~~~   82 (328)
                      +..+.+.++.|++++|.|+ +.+++.++|.++|+++++++++++.         ++..++++|++++|||||||.|+||+
T Consensus         6 ~~~~~~~~~~~~~llr~l~-~~~a~~~~~~~~va~~~~~~~~~~~---------~~~~~~~k~~lKtPKGTrD~~p~qm~   75 (518)
T KOG1936|consen    6 LVTTRESISFQGILLRDLK-SSCASPEQISEEVALILALKNGLGR---------SGSIFKKKFSLKTPKGTRDFSPEQMA   75 (518)
T ss_pred             HHHHHHHHhhhHHHHhhhh-hccCChhHhhHHHHHHHHHhcccCC---------CCCCcCcceeecCCCCCCcCCHHHHH
Confidence            4677899999999999999 9999999999999999999999863         12236899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcccchHHH------------------------------------------------------
Q psy13909         83 LRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------------------------  108 (328)
Q Consensus        83 ~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------------------------  108 (328)
                      +|++|+++|.++|++||+++||||+|                                                      
T Consensus        76 lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~sikRy~  155 (518)
T KOG1936|consen   76 LREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSIKRYH  155 (518)
T ss_pred             HHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccceeee
Confidence            99999999999999999999999999                                                      


Q ss_pred             ----------------------------------------------------------------HHHHHHHHcCCChhhH
Q psy13909        109 ----------------------------------------------------------------LLDGLFESCGVPAKQF  124 (328)
Q Consensus       109 ----------------------------------------------------------------il~~il~~~Gi~~~~~  124 (328)
                                                                                      |+|+||+.||||++++
T Consensus       156 iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~f  235 (518)
T KOG1936|consen  156 IAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKF  235 (518)
T ss_pred             EEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCccceEEEecHHHHHHHHHHHhCCCHHHh
Confidence                                                                            9999999999999999


Q ss_pred             HHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHHhHHHHHHHHHHHHH
Q psy13909        125 RTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDI  204 (328)
Q Consensus       125 ~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~~L~~l~~~L~~  204 (328)
                      ++||++|||+||++|++|++||+.++||+++.+|+|++|+.++|..++++++.++|.+..|+.+.+|+++|+.|++||+.
T Consensus       236 rtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~  315 (518)
T KOG1936|consen  236 RTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEALADLKQLFEYLEI  315 (518)
T ss_pred             hhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEccCCccCCccccceEEEEEEcCC----c-----c----CCccccccccCccchhhhhhcCCCCCCCCeeEE
Q psy13909        205 YELTDKVIFDLSLARGLDYYTGIIYEAVLIGD----R-----K----KGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGI  271 (328)
Q Consensus       205 ~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~----~-----~----~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGf  271 (328)
                      ||++++|+||+||+||||||||+|||++..+.    +     +    .+.++||||+|||||||++||++++..+||||+
T Consensus       316 fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~  395 (518)
T KOG1936|consen  316 FGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQ  395 (518)
T ss_pred             cCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCcchhhHHHHhccccCcCCccce
Confidence            99999999999999999999999999999651    0     0    112578999999999999999998889999999


Q ss_pred             eeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909        272 SIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD  328 (328)
Q Consensus       272 siglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae  328 (328)
                      |+|+||||++|+++......+.|++.++|||++++++++.+|++++++||++||++|
T Consensus       396 S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE  452 (518)
T KOG1936|consen  396 SVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAE  452 (518)
T ss_pred             eehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchh
Confidence            999999999999988766667899999999999999999999999999999999986

>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>KOG1035|consensus Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd00938 HisRS_RNA HisRS_RNA binding domain Back     alignment and domain information
>cd00939 MetRS_RNA MetRS_RNA binding domain Back     alignment and domain information
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00936 WEPRS_RNA WEPRS_RNA binding domain Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>cd00935 GlyRS_RNA GlyRS_RNA binding domain Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4 Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
4g85_A517 Crystal Structure Of Human Hisrs Length = 517 1e-73
4g84_A464 Crystal Structure Of Human Hisrs Length = 464 3e-73
3net_A465 Crystal Structure Of Histidyl-Trna Synthetase From 2e-19
3hri_A456 Histidyl-Trna Synthetase (Apo) From Trypanosoma Bru 1e-12
3hrk_A456 Histidyl-Trna Synthetase From Trypanosoma Cruzi (Hi 9e-12
3rac_A373 Crystal Strucutre Of Histidine--Trna Ligase Subunit 2e-09
1htt_A423 Histidyl-Trna Synthetase Length = 423 5e-06
1kmm_A424 Histidyl-Trna Synthetase Complexed With Histidyl-Ad 6e-06
1wu7_A434 Crystal Structure Of Histidyl-Trna Synthetase From 6e-06
2el9_A431 Crystal Structure Of E.Coli Histidyl-Trna Synthetas 6e-06
4e51_A467 Crystal Structure Of A Histidyl-Trna Synthetase His 6e-05
1adj_A421 Histidyl-Trna Synthetase In Complex With Histidine 3e-04
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs Length = 517 Back     alignment and structure 
Iteration: 1

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 138/224 (61%), Positives = 167/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
           +LDG+F  CGV   +FRTICSSVDKLDK SWE+V+ EM  EKGL+  +AD+IG YVQQHG
Sbjct: 227 ILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 286
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
              LVE+ +QD  L  +K AL GL  +KLL  Y  ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 287 GVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 346
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
           YEAVL+    + GE    VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E 
Sbjct: 347 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 406
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
           +L A   K+RTTE QV VASAQK LLEER+++ S LW  GI A+
Sbjct: 407 RLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 450
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs Length = 464 Back     alignment and structure
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc Sp. Pcc 7120 Length = 465 Back     alignment and structure
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei Length = 456 Back     alignment and structure
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidyl-Adenylate Complex) Length = 456 Back     alignment and structure
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 373 Back     alignment and structure
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase Length = 423 Back     alignment and structure
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate Length = 424 Back     alignment and structure
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Thermoplasma Acidophilum Length = 434 Back     alignment and structure
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase Complexed With A Histidyl-Adenylate Analogue Length = 431 Back     alignment and structure
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From Burkholderia Thailandensis Bound To Histidine Length = 467 Back     alignment and structure
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine Length = 421 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 4e-70
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 3e-11
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 1e-68
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 1e-10
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 3e-46
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 4e-10
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 3e-35
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 1e-07
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 4e-34
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 1e-06
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 3e-18
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 6e-04
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 1e-16
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 7e-15
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 5e-14
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 2e-12
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 4e-12
1x59_A73 Histidyl-tRNA synthetase; hisrs, structural genomi 8e-08
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
 Score =  224 bits (573), Expect = 4e-70
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 12/223 (5%)

Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
           +L G F+S  +   Q ++  S +D L+K     V+ E+  ++G++     KI  +V+  G
Sbjct: 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELE-KEGINPEQTQKIIDFVKIDG 247

Query: 169 HKELVEKFMQ--DDLLKTSKSALVGLAAIKLLLSYCDIYELTDK-VIFDLSLARGLDYYT 225
             + V   ++     L  S+   +G++ ++ +++      + DK    DL++ARGL+YYT
Sbjct: 248 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 307

Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
           G +YE  LIG     E++GS+  GGRY++LVG F      +P VGISIG+ R+ S +   
Sbjct: 308 GTVYETTLIG----HEALGSICSGGRYEELVGTFIG--EKMPGVGISIGLTRLISRLLKA 361

Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
                  L  T  QV V + Q  L+   +++   L + G+N  
Sbjct: 362 --GILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVI 402
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456 Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456 Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Length = 373 Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Length = 373 Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Length = 275 Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Length = 420 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Length = 467 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Length = 423 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Length = 421 Back     alignment and structure
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 100.0
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.94
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 99.72
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 99.64
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 99.62
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.42
1x59_A73 Histidyl-tRNA synthetase; hisrs, structural genomi 99.32
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.26
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.2
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.13
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.09
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 98.98
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 98.87
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 98.75
1d2d_A59 TRNA synthetase, tRNA ligase; tRNA synthetase (lig 98.03
1fyj_A57 Multifunctional aminoacyl-tRNA synthetase; helix-t 97.8
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 97.63
2djv_A79 Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d 97.61
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 97.42
1r6t_A 477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 95.57
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 95.54
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 95.29
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 95.04
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 94.73
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 94.67
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 94.41
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 93.33
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 91.84
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 90.11
3ikl_A 459 DNA polymerase subunit gamma-2, mitochondrial; tra 86.06
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 85.59
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 83.74
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 83.5
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 80.36
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.6e-60  Score=476.14  Aligned_cols=314  Identities=57%  Similarity=0.921  Sum_probs=241.4

Q ss_pred             hHHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCccccccccccccccceeCCCCCccCCchhHH
Q psy13909          3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMV   82 (328)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkGtrD~~p~~~~   82 (328)
                      +..++++|+.|++.+++|| +.+++...|+|+|++|+++|++++           ++..++||.+++|+||+||+|.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~P~G~~D~lP~~~~   82 (517)
T 4g85_A           15 RAALEELVKLQGERVRGLK-QQKASAELIEEEVAKLLKLKAQLG-----------PDESKQKFVLKTPKGTRDYSPRQMA   82 (517)
T ss_dssp             -----------------------------------------------------------CCCCCCCCCTTCCCBCHHHHH
T ss_pred             HHHHHHHHHHhhhhhcccc-cccCCHHHHHHHHHHHHHhhhhcC-----------CcccccceeeeCCCCCCccCHHHHH
Confidence            6788999999999999999 999999999999999999999997           6778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcccchHHH------------------------------------------------------
Q psy13909         83 LRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------------------------  108 (328)
Q Consensus        83 ~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------------------------  108 (328)
                      +|++|+++++++|++|||++|+||+|                                                      
T Consensus        83 ~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~k~yy  162 (517)
T 4g85_A           83 VREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYH  162 (517)
T ss_dssp             HHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHHHHHTTCSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhCCCCCceeEE
Confidence            99999999999999999999999997                                                      


Q ss_pred             ----------------------------------------------------------------HHHHHHHHcCCChhhH
Q psy13909        109 ----------------------------------------------------------------LLDGLFESCGVPAKQF  124 (328)
Q Consensus       109 ----------------------------------------------------------------il~~il~~~Gi~~~~~  124 (328)
                                                                                      +++++++.||++++.+
T Consensus       163 ig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~  242 (517)
T 4g85_A          163 IAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKF  242 (517)
T ss_dssp             EEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHH
T ss_pred             EeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhhcchHHHH
Confidence                                                                            7889999999999999


Q ss_pred             HHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHHhHHHHHHHHHHHHH
Q psy13909        125 RTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDI  204 (328)
Q Consensus       125 ~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~~L~~l~~~L~~  204 (328)
                      +.++.++|++|+.+|++++++++.+.+++++.+++|..++..+|+.+.++.+..++.+..+..+.+++++|+.++++|+.
T Consensus       243 ~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~  322 (517)
T 4g85_A          243 RTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTL  322 (517)
T ss_dssp             HHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998888777777788889999999999999999


Q ss_pred             cCCCceEEEccCCccCCccccceEEEEEEcCCccC-C---ccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHH
Q psy13909        205 YELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKK-G---ESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFS  280 (328)
Q Consensus       205 ~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~-~---~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~  280 (328)
                      +|+..+|.|||+++||+|||||+|||++..+.+.+ +   ...++||+|||||+|++.|+++|+++||||||+|+|||+.
T Consensus       323 ~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f~~~G~~~pavGfa~gierl~~  402 (517)
T 4g85_A          323 FGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFS  402 (517)
T ss_dssp             HTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHHTTSSSCCCCCEEEEEECHHHHHH
T ss_pred             hCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHHHhccCCCCCCcccccchHHHHHH
Confidence            99999999999999999999999999998765411 0   1346899999999999999877899999999999999999


Q ss_pred             HHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909        281 LIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD  328 (328)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae  328 (328)
                      +|++............+++|+|++.+++.+.++++++++||++||+||
T Consensus       403 ~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve  450 (517)
T 4g85_A          403 IVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE  450 (517)
T ss_dssp             HHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEE
Confidence            999875443234556789999999999889999999999999999985
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Back     alignment and structure
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d1h4vb2324 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisR 3e-21
d1h4vb2324 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisR 7e-10
d1kmma2322 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisR 7e-21
d1kmma2322 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisR 9e-09
d1qe0a2325 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisR 1e-20
d1qe0a2325 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisR 5e-09
d1z7ma1318 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase 2e-20
d1z7ma1318 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase 2e-06
d1wu7a2327 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisR 3e-20
d1wu7a2327 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisR 3e-09
d1usya_275 d.104.1.1 (A:) ATP phosphoribosyltransferase regul 1e-15
d1fyja_57 a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas 7e-04
d1d2da_56 a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas 0.001
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Length = 324 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 90.4 bits (223), Expect = 3e-21
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 122 KQFRTICSSVDKLDKWSWEDVRYEM--TQEKGLSKIIADKIG--IYVQQHGHKELVEKFM 177
           +    + S  D  D+  +     E+     + LS+   +++            E  +  +
Sbjct: 157 RLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALL 216

Query: 178 QDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDR 237
           ++  ++     L   A   L      +  L+     + +L RGLDYY    +E       
Sbjct: 217 KELGVRPMLDFLGEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHH---- 272

Query: 238 KKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
           ++  +  ++ GGGRYD L  +       VP VG + GVER+   +E++
Sbjct: 273 EEIGAQSALGGGGRYDGLSELLG--GPRVPGVGFAFGVERVALALEAE 318
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Length = 324 Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Length = 325 Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Length = 325 Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318 Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318 Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 327 Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 327 Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Length = 275 Back     information, alignment and structure
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 100.0
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 100.0
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 100.0
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 100.0
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 99.9
d1fyja_57 Multifunctional Glu-Pro-tRNA synthase (EPRS) secon 98.65
d1d2da_56 Multifunctional Glu-Pro-tRNA synthase (EPRS) secon 98.58
d1r6ta154 N-terminal domain of eukaryotic tryptophanyl-tRNA 98.5
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 96.25
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 95.86
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 95.28
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 94.14
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 92.45
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 91.39
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 91.02
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 88.63
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 86.53
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 82.24
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 81.46
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.2e-36  Score=283.81  Aligned_cols=204  Identities=24%  Similarity=0.399  Sum_probs=162.8

Q ss_pred             ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-----------------------------------
Q psy13909         64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-----------------------------------  108 (328)
Q Consensus        64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-----------------------------------  108 (328)
                      +|.+++||||||++|+++..+++|.+++.++|++|||++|+||+|                                   
T Consensus         1 ~~~~~~~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LRpD~   80 (327)
T d1wu7a2           1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEA   80 (327)
T ss_dssp             CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCS
T ss_pred             CCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhcccccc
Confidence            467899999999999999999999999999999999999999976                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy13909        109 --------------------------------------------------------------------------------  108 (328)
Q Consensus       109 --------------------------------------------------------------------------------  108 (328)
                                                                                                      
T Consensus        81 T~~iar~~~~~~~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~~~~~D~Eii~l~~~~l~~~~~~~~~~i~l  160 (327)
T d1wu7a2          81 TPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRI  160 (327)
T ss_dssp             HHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred             cchhhhHhhhhhhccccceeeccCcceeccccccCCcchhhhhhhhhcCCcchHHHHHHHHHHHHHHhccccccceeecc
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccc
Q psy13909        109 ----LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKT  184 (328)
Q Consensus       109 ----il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~  184 (328)
                          +++.+++.++.+.  ...+...++++++...+++..++ ...+...+....+..+.......+.+....       
T Consensus       161 ~~~~i~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-------  230 (327)
T d1wu7a2         161 NSRKIMEEIIGGMTSSD--PFSVFSIIDRYHKISREEFVDQL-RSAGIGEDGVSMIADLCSGTRGIDEMARIT-------  230 (327)
T ss_dssp             EEHHHHHHHHHTTCSSC--HHHHHHHHHTTTTSCHHHHHHHH-HHTTCCHHHHHHHHHHHHSCBCHHHHHHHT-------
T ss_pred             cchhhHHHHHHhhhhhH--HHHHHHHHHHHHhhccchhhhhh-hhhhhhhHHHhhhhhhcccchhhhHHHhhh-------
Confidence                6667776666544  33456667888888887776654 445677777676666655444443332221       


Q ss_pred             hhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCC
Q psy13909        185 SKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQR  264 (328)
Q Consensus       185 ~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~  264 (328)
                       .....++++|..+.+.++.+|+. .|.|||+++||++||||+|||+|....     ...+||+|||||+|++.|+  |+
T Consensus       231 -~~~~~~~~~l~~l~~~l~~~~~~-~i~~D~~~~r~~~YYtGivFe~~~~~~-----~~~~i~~GGRYD~L~~~f~--g~  301 (327)
T d1wu7a2         231 -GKSSEEIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSG-----QFRAILGGGRYDNLASLMS--GE  301 (327)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTS-----SCSCSSEEEECTTHHHHHH--SC
T ss_pred             -chhhhHHHHHHHHHHHHHhcCCc-ceeEccccCCCCCCcCCeEEEEEecCC-----CcceeeecccchHHHHhcC--CC
Confidence             22345678899999999999985 699999999999999999999998641     3468999999999999997  57


Q ss_pred             CCCeeEEeeeHHHHHHHHHHhh
Q psy13909        265 NVPCVGISIGVERIFSLIESKL  286 (328)
Q Consensus       265 ~vPavGfsiglerL~~~l~~~~  286 (328)
                      ++|||||||++|||+.+|+..+
T Consensus       302 ~~pAvGfsl~~~~l~~~l~~~~  323 (327)
T d1wu7a2         302 SVPAVGFGMGDAVISLLLKREN  323 (327)
T ss_dssp             CCCEEEEEEEHHHHHHHHHHTT
T ss_pred             CCCeEEEEeeHHHHHHHHHhcC
Confidence            8999999999999999998754
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure