Psyllid ID: psy13922

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MLPVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccccHHHHHcccccccccEEEHHHHHHHcccccccEEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccccHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHccccccHHHHHHHHHccccEEEcccccccccccccEEEEEEcccccHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccHHEcccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHccEEEcccHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHccccEEEEEccccccccccHHHHHHHHcHcccccccEEEEEEccccccccEccHHHHHHHHHHHHHccEEEEEcHHHHHHEccccccEEcHHHHcHHHcccccccEEEEEEcccHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccHHHHHHccccccHHHHHHHHHHcccEEEEcccccccccccEEEEEEcccHHHHHHHHHHHHHcccHHHHHHHHHHHHccEEEEcccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLPVFSLSLQVLALVslpqlfddprfpddVKQRAQAVLdgcrgqsvgsytdspgiEIIRRHVAQYIsrrdgqpadwQDVILSAGASDGIKSVLKLLIEdvdgkkpgvlipipqyplysaSLAEFNMEQIGYYldeskqwglpiSELERSITEARkhcnpraiviinpgnptgqvltkENIQDIIKFAHREKLFLFADevyqdnvyaegskfYSFKKVLVemgepyksmelasfmscskgymgecglrggysevinldpGVKAMLHKSISAMLCPTVLALvslpqlfddprfpddVKQRAQAVLdgcrgqsvgqtvmdcvvnppqpgepsyeqfSREKQSVLDSLKQRAKMVADTfnsiegmscnpvqgamyafpqmkLPAKAIAKAKAEGKCPSVLYAFELLERtgicivpgagfgqvpgtyhfRQQVWWRHYTQRAIAKAkaegkcpsVLYAFESLErtgicivpgagfgqvpgtyhfrttilpqPEKLKAMLEKFREFHEEFLAKYK
Flexible Loop (DISEMBL)
MLPVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAvldgcrgqsvgsytdspgieIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIViinpgnptgqvLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK
Low Complexity Region (SEG)
MLPVFslslqvlalvslpqlFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMklpakaiakakaegkCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK
Disordered region (IsUnstruct)
***VFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV*******************************ADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFH********
Disordered Region (DISOPRED)
MLPVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAK**
Disordered Region (DISEMBL)
MLPVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAK********GKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK
Disordered Region (DISPRO)
MLPVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	509	2.2.26 [Sep-21-2011]
Q6NYL5	549	Alanine aminotransferase	no	N/A	0.756	0.701	0.539	1e-129
Q28DB5	524	Alanine aminotransferase	yes	N/A	0.756	0.734	0.532	1e-127
Q6GM82	540	Alanine aminotransferase	N/A	N/A	0.758	0.714	0.521	1e-126
A4IFH5	496	Alanine aminotransferase	yes	N/A	0.758	0.778	0.516	1e-125
P24298	496	Alanine aminotransferase	yes	N/A	0.756	0.776	0.524	1e-124
Q8BGT5	522	Alanine aminotransferase	yes	N/A	0.756	0.737	0.514	1e-124
Q8TD30	523	Alanine aminotransferase	no	N/A	0.756	0.736	0.522	1e-124
P25409	496	Alanine aminotransferase	no	N/A	0.758	0.778	0.523	1e-123
Q8QZR5	496	Alanine aminotransferase	no	N/A	0.758	0.778	0.521	1e-121
Q54MJ7	534	Probable alanine aminotra	yes	N/A	0.742	0.707	0.459	1e-100

>sp|Q6NYL5|ALAT2_DANRE Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/421 (53%), Positives = 292/421 (69%), Gaps = 36/421 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV+AL + PQL DD +FP+D K RA+ +L  C G S+G+YT S GI+ +R+ VA+YI RR
Sbjct: 137 QVMALCTYPQLLDDNKFPEDAKNRARRILQSCGGNSIGAYTTSQGIDCVRQDVAKYIERR 196

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  P+D  ++ L+ GASDGI ++LKLL       + GV+I IPQYPLYSAS+AE    Q
Sbjct: 197 DGGIPSDPDNIYLTTGASDGIVTILKLLTAGEGLTRTGVMISIPQYPLYSASIAELGAVQ 256

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           I YYL+E K W L ISEL+RS+  ARKHCNPR + IINPGNPTGQV +++ I+D+I+FA 
Sbjct: 257 INYYLNEEKCWSLDISELQRSLQAARKHCNPRVLCIINPGNPTGQVQSRQCIEDVIQFAA 316

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGECGLR 247
           +E LFL ADEVYQDNVYA+G +F+SFKKVL EMG  Y K +ELASF S SK YMGECG R
Sbjct: 317 KENLFLMADEVYQDNVYAKGCEFHSFKKVLFEMGPEYSKKVELASFHSTSKCYMGECGFR 376

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EVIN+D  VKA L K +S  LCP                                 
Sbjct: 377 GGYMEVINMDADVKAQLTKLVSVRLCPP-------------------------------- 404

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
             + GQ +MD VVNPPQPGEPS++ F +E+ +VL +L ++AK+     N++ G+SCNPVQ
Sbjct: 405 --APGQALMDLVVNPPQPGEPSHQTFMQERTAVLSALAEKAKLTEQILNTVPGISCNPVQ 462

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FP++ LP +AI++AKA+G+ P + Y  +LLE TGIC+VPG+GFGQ  GTYHFR  
Sbjct: 463 GAMYSFPRITLPERAISEAKAKGQAPDMFYCMKLLEETGICLVPGSGFGQREGTYHFRMT 522

Query: 428 V 428
           +
Sbjct: 523 I 523

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 2

>sp|Q28DB5|ALAT2_XENTR Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1

 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/421 (53%), Positives = 290/421 (68%), Gaps = 36/421 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV A+   P+L +D +FP+DVKQ+A  +L  C G S+G+Y+ S GIE+IR+ VA+YI RR
Sbjct: 112 QVSAICLYPELMNDNKFPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERR 171

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG   +D  ++ LS GASD I ++LKLL+      + GVLIPIPQYPLYSA+LAE N  Q
Sbjct: 172 DGGIQSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVLIPIPQYPLYSAALAELNAVQ 231

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE   W L I+EL RS+TEARKHC+P+ + IINPGNPTGQV +++ I+D+I+FA 
Sbjct: 232 VNYYLDEENCWALDINELRRSLTEARKHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAA 291

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGECGLR 247
            E LFL ADEVYQDNVYA+G  F+SFKKVL EMG  Y +++ELASF S SKGYMGECG R
Sbjct: 292 EENLFLMADEVYQDNVYAKGCTFHSFKKVLFEMGPKYSETVELASFHSTSKGYMGECGFR 351

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EVIN+DP VK  L K +S  LCP V                               
Sbjct: 352 GGYMEVINMDPAVKQQLTKLVSVRLCPPV------------------------------- 380

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ ++D +VNPP+PGEPSY+QF  EKQ+VL +L ++A++  +  N   G+ CNPVQ
Sbjct: 381 ---PGQALLDVIVNPPKPGEPSYKQFMAEKQAVLGNLAEKARLTEEILNQSPGIRCNPVQ 437

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FP++ +P KAI  A+AEG+ P + +  +LLE TGIC+VPG+GFGQ  GT+HFR  
Sbjct: 438 GAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMT 497

Query: 428 V 428
           +
Sbjct: 498 I 498

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6GM82|ALAT2_XENLA Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1

 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/422 (52%), Positives = 290/422 (68%), Gaps = 36/422 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV A+   P+L +D +FP+DVKQ+A  +L  C G S+G+Y+ S GIE+IR+ VA+YI RR
Sbjct: 128 QVSAICLYPELMNDNKFPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERR 187

Query: 70  DGQP-ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG   +D  ++ LS GASD I ++LKLL+      + GV+IPIPQYPLYSA+LAE +  Q
Sbjct: 188 DGGILSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVMIPIPQYPLYSAALAELDAVQ 247

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE   W L I+EL R++ EARKHC+P+ + IINPGNPTGQV +++ I+D+I+FA 
Sbjct: 248 VNYYLDEENCWALDINELRRALAEARKHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAA 307

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGECGLR 247
            E LFL ADEVYQDNVYA+G  F+SFKKVL EMG  Y +++ELASF S SKGYMGECG R
Sbjct: 308 EENLFLMADEVYQDNVYAKGCAFHSFKKVLFEMGPKYSETLELASFHSTSKGYMGECGFR 367

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EVIN+DP VK  L K +S  LCP V                               
Sbjct: 368 GGYMEVINMDPAVKQQLTKLVSVRLCPPV------------------------------- 396

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ ++D +VNPP+PGEPSY+QF  EKQ+VL++L ++A++  +  N   G+ CNPVQ
Sbjct: 397 ---PGQVLLDVIVNPPKPGEPSYKQFISEKQAVLNNLAEKARLTEEILNQAPGIRCNPVQ 453

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FP++ +P KAI  A+AEG+ P + +  +LLE TGIC+VPG+GFGQ  GT+HFR  
Sbjct: 454 GAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMT 513

Query: 428 VW 429
           + 
Sbjct: 514 IL 515

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|A4IFH5|ALAT1_BOVIN Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/422 (51%), Positives = 281/422 (66%), Gaps = 36/422 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVLAL   P L + P FPDD K+RA+ +L  C G S+G+Y+ S G+++IR  VA+YI RR
Sbjct: 84  QVLALCVHPDLLNSPDFPDDAKRRAERILQACGGHSLGAYSISAGVQMIREDVARYIERR 143

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  PAD  ++ LS GASD I +VLKLL+      + GVLIPIPQYPLYSA+LAEFN  Q
Sbjct: 144 DGGIPADPNNIFLSTGASDAIVTVLKLLVTGEGRTRTGVLIPIPQYPLYSAALAEFNAVQ 203

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE + W L ++EL R++ +AR HC PRA+ +INPGNPTGQV T+E I+D+I+FA+
Sbjct: 204 VDYYLDEERAWALDVAELRRALRQARDHCRPRALCVINPGNPTGQVQTRECIEDVIRFAY 263

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
            EKLFL ADEVYQDNVYAE S+F+SFKKVL EMG PY +  ELASF S SKGYMGECG R
Sbjct: 264 EEKLFLLADEVYQDNVYAESSQFHSFKKVLTEMGPPYAAQQELASFHSISKGYMGECGFR 323

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EV+N+D  VK  + K  S  LCP                                 
Sbjct: 324 GGYVEVVNMDAAVKQQMQKLRSVRLCPP-------------------------------- 351

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
             + GQ ++D  V+PP P +PS+ +F  E+++VL  L  +AK+    FN   G+ CNPVQ
Sbjct: 352 --TPGQVLLDVAVSPPAPSDPSFPRFQAERRAVLAELAAKAKLTEQVFNEAPGIRCNPVQ 409

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FP+++LP +A+ +A+  G  P + +   LLE TGIC+VPG+GFGQ  GTYHFR  
Sbjct: 410 GAMYSFPRVQLPPRAVQRAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMT 469

Query: 428 VW 429
           + 
Sbjct: 470 IL 471

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P24298|ALAT1_HUMAN Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3

 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/421 (52%), Positives = 279/421 (66%), Gaps = 36/421 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVLAL   P L   P FPDD K+RA+ +L  C G S+G+Y+ S GI++IR  VA+YI RR
Sbjct: 84  QVLALCVNPDLLSSPNFPDDAKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYIERR 143

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  PAD  +V LS GASD I +VLKLL+      + GVLIPIPQYPLYSA+LAE    Q
Sbjct: 144 DGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQ 203

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE + W L ++EL R++ +AR HC PRA+ +INPGNPTGQV T+E I+ +I+FA 
Sbjct: 204 VDYYLDEERAWALDVAELHRALGQARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAF 263

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
            E+LFL ADEVYQDNVYA GS+F+SFKKVL+EMG PY    ELASF S SKGYMGECG R
Sbjct: 264 EERLFLLADEVYQDNVYAAGSQFHSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFR 323

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EV+N+D  V+  + K +S  LCP V                               
Sbjct: 324 GGYVEVVNMDAAVQQQMLKLMSVRLCPPV------------------------------- 352

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ ++D VV+PP P +PS+ QF  EKQ+VL  L  +AK+    FN   G+SCNPVQ
Sbjct: 353 ---PGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQ 409

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FP+++LP +A+ +A+  G  P + +   LLE TGIC+VPG+GFGQ  GTYHFR  
Sbjct: 410 GAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMT 469

Query: 428 V 428
           +
Sbjct: 470 I 470

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8BGT5|ALAT2_MOUSE Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1

 Score =  446 bits (1148), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/420 (51%), Positives = 281/420 (66%), Gaps = 35/420 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV+AL + P L + P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA +I+RR
Sbjct: 111 QVMALCTYPNLLNSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAFITRR 170

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG PAD  ++ L+ GASDGI ++LKLL+      + GV+IPIPQYPLYSA ++E +  Q+
Sbjct: 171 DGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVISELDAVQV 230

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
            YYLDE   W L + EL R++ +A+ HC+P+ + IINPGNPTGQV +++ I+D+I FA  
Sbjct: 231 NYYLDEENCWALNVDELRRALRQAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE 290

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLRG 248
           EKLFL ADEVYQDNVY+   +F+SFKKVL +MG  Y S +ELASF S SKGYMGECG RG
Sbjct: 291 EKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGYRG 350

Query: 249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG 308
           GY EVINL P +K  L K +S  LCP V                                
Sbjct: 351 GYMEVINLHPEIKGQLVKLLSVRLCPPV-------------------------------- 378

Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG 368
              GQ  MD VVNPP+PGE S+EQFSREK+ VL +L ++AK+  D FN + G+ CNP+QG
Sbjct: 379 --SGQAAMDIVVNPPEPGEESFEQFSREKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQG 436

Query: 369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           AMYAFP++ +PAKA+  A++    P + Y  +LLE TGIC+VPG+GFGQ  GTYHFR  +
Sbjct: 437 AMYAFPRILIPAKAVEAAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI 496

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8TD30|ALAT2_HUMAN Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1

 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/421 (52%), Positives = 281/421 (66%), Gaps = 36/421 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV+AL + P L D P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA YI+RR
Sbjct: 111 QVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRR 170

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  PAD  ++ L+ GASDGI ++LK+L+      + GV+IPIPQYPLYSA ++E +  Q
Sbjct: 171 DGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQ 230

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE   W L ++EL R++ EA+ HC+P+ + IINPGNPTGQV +++ I+D+I FA 
Sbjct: 231 VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAW 290

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
            EKLFL ADEVYQDNVY+   +F+SFKKVL EMG  Y S +ELASF S SKGYMGECG R
Sbjct: 291 EEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYR 350

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EVINL P +K  L K +S  LCP V                               
Sbjct: 351 GGYMEVINLHPEIKGQLVKLLSVRLCPPV------------------------------- 379

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ  MD VVNPP  GE S+EQFSREK+SVL +L ++AK+  D FN + G+ CNP+Q
Sbjct: 380 ---SGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQ 436

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMYAFP++ +PAKA+  A+A    P + Y  +LLE TGIC+VPG+GFGQ  GTYHFR  
Sbjct: 437 GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMT 496

Query: 428 V 428
           +
Sbjct: 497 I 497

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P25409|ALAT1_RAT Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/422 (52%), Positives = 278/422 (65%), Gaps = 36/422 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVLAL   P L   P FP+D K+RA+ +L  C G S+G+Y+ S GI+ IR  VAQYI RR
Sbjct: 84  QVLALCVYPNLLSSPDFPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVAQYIERR 143

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  PAD  ++ LS GASD I ++LKLL+      + GVLIPIPQYPLYSA+LAE +  Q
Sbjct: 144 DGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALAELDAVQ 203

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE + W L I+EL R++ +AR  C PR + +INPGNPTGQV T+E I+ +I+FA 
Sbjct: 204 VDYYLDEERAWALDIAELRRALCQARDRCCPRVLCVINPGNPTGQVQTRECIEAVIRFAF 263

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
           +E LFL ADEVYQDNVYAEGS+F+SFKKVL+EMG PY +  ELASF S SKGYMGECG R
Sbjct: 264 KEGLFLMADEVYQDNVYAEGSQFHSFKKVLMEMGPPYSTQQELASFHSVSKGYMGECGFR 323

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EV+N+D  V+  + K +S  LCP V                               
Sbjct: 324 GGYVEVVNMDAEVQKQMGKLMSVRLCPPV------------------------------- 352

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ +MD VV+PP P EPS++QF  E+Q VL  L  +AK+    FN   G+ CNPVQ
Sbjct: 353 ---PGQALMDMVVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQ 409

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FPQ++LP KA+ +A+  G  P + +   LLE TGIC+VPG+GFGQ  GTYHFR  
Sbjct: 410 GAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMT 469

Query: 428 VW 429
           + 
Sbjct: 470 IL 471

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8QZR5|ALAT1_MOUSE Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3

 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/422 (52%), Positives = 275/422 (65%), Gaps = 36/422 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVLAL   P L   P FP+D K+RA+ +L  C G S+G+Y+ S GI+ IR  VAQYI RR
Sbjct: 84  QVLALCVYPNLLSSPDFPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVAQYIERR 143

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  PAD  ++ LS GASD I ++LKLL+      + GVLIPIPQYPLYSA+LAE +  Q
Sbjct: 144 DGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAALAELDAVQ 203

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE + W L I+EL R++ +AR  C PR + +INPGNPTGQV T+E I+ +I+FA 
Sbjct: 204 VDYYLDEERAWALDIAELRRALCQARDRCCPRVLCVINPGNPTGQVQTRECIEAVIRFAF 263

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
            E LFL ADEVYQDNVYAEGS+F+SFKKVL EMG PY +  ELASF S SKGYMGECG R
Sbjct: 264 EEGLFLMADEVYQDNVYAEGSQFHSFKKVLTEMGPPYATQQELASFHSVSKGYMGECGFR 323

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EV+N+D  V+  + K +S  LCP V                               
Sbjct: 324 GGYVEVVNMDAEVQKQMAKLMSVRLCPPV------------------------------- 352

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ +M  VV+PP P EPS++QF  E+Q VL  L  +AK+    FN   G+ CNPVQ
Sbjct: 353 ---PGQALMGMVVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQ 409

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMY+FPQ++LP KA+ +A+  G  P + +   LLE TGIC+VPG+GFGQ  GTYHFR  
Sbjct: 410 GAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMT 469

Query: 428 VW 429
           + 
Sbjct: 470 IL 471

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Participates in cellular nitrogen metabolism and also in liver gluconeogenesis starting with precursors transported from skeletal muscles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q54MJ7|ALAM_DICDI Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/422 (45%), Positives = 272/422 (64%), Gaps = 44/422 (10%)

Query: 10  QVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
           QV++LV  P L D+P     +P DV  RA+ +L G    + G+Y++S GI ++ R VA +
Sbjct: 122 QVVSLVECPDLLDNPYVEKIYPADVISRAKEIL-GSINNTTGAYSNSQGIGLVLRSVADF 180

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
           I RRDG  +D  ++ L+ GAS G++ +LKLLI+D   +  G+LIPIPQYPLYSA++  +N
Sbjct: 181 IERRDGHKSDPSEIFLTDGASVGVQRILKLLIKD---RSDGILIPIPQYPLYSATIELYN 237

Query: 126 MEQIGYYLDESKQWGLPISELERSITEA-RKHCNPRAIVIINPGNPTGQVLTKENIQDII 184
             Q+GY L+E K W L IS+LE S  +A  K  NPRA+VIINPGNPTGQ L + N+++I+
Sbjct: 238 GSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANMEEIV 297

Query: 185 KFAHREKLFLFADEVYQDNVYAEGSK-FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE 243
           KF   + + L ADEVYQ+NVY + SK F SFKKV+ +MG  Y  +E+ SF S SKG++GE
Sbjct: 298 KFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSFHSVSKGFVGE 357

Query: 244 CGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL 303
           CG RGGY E+  +   VKA ++K  S  LCP V                           
Sbjct: 358 CGKRGGYMELNGVTQDVKAEIYKLASIGLCPNV--------------------------- 390

Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
                  +GQ V+D +V PP  GE S++ + +E+ ++ +SLK+RA ++ +  N++EG++C
Sbjct: 391 -------IGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTC 443

Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
           NP +GAMYAFPQ++LPAKA+  A + GK P   Y  +LLE TGIC+VPG+GFGQ  GT+H
Sbjct: 444 NPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWH 503

Query: 424 FR 425
           FR
Sbjct: 504 FR 505

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	509
328704534	527	PREDICTED: alanine aminotransferase 2-li	0.756	0.730	0.720	1e-179
347964715	552	AGAP000901-PA [Anopheles gambiae str. PE	0.770	0.710	0.648	1e-162
242019637	485	Alanine aminotransferase, putative [Pedi	0.756	0.793	0.644	1e-159
157124459	544	alanine aminotransferase [Aedes aegypti]	0.758	0.709	0.643	1e-157
170057848	549	alanine aminotransferase [Culex quinquef	0.758	0.703	0.650	1e-154
383853974	542	PREDICTED: alanine aminotransferase 2-li	0.756	0.710	0.606	1e-152
321460188	485	hypothetical protein DAPPUDRAFT_309150 [	0.752	0.789	0.608	1e-151
350411444	542	PREDICTED: alanine aminotransferase 2-li	0.756	0.710	0.601	1e-149
307191465	550	Alanine aminotransferase 2 [Camponotus f	0.756	0.7	0.597	1e-148
340729753	543	PREDICTED: alanine aminotransferase 2-li	0.756	0.709	0.601	1e-148

>gi|328704534|ref|XP_001948711.2| PREDICTED: alanine aminotransferase 2-like [Acyrthosiphon pisum]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/419 (72%), Positives = 343/419 (81%), Gaps = 34/419 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVLALVS P+L +D R+P+DVK+RA+ +LDGCRG SVGSYTDSPGIEIIR+HVA+YI RR
Sbjct: 117 QVLALVSQPELLEDDRYPEDVKERARTILDGCRGGSVGSYTDSPGIEIIRKHVARYIERR 176

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG P D+ +V+L AGASDGIK++L+LL+ DVDGKKPGVLIPIPQYPLYSA+LAEFN++Q+
Sbjct: 177 DGIPCDYLNVLLCAGASDGIKAILRLLVADVDGKKPGVLIPIPQYPLYSATLAEFNVKQV 236

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
           GY+LDE+K WGL ++ELERSITEARKHCNPRAIV+INPGNPTGQVLTKEN+ D+IKFA++
Sbjct: 237 GYFLDENKNWGLDVNELERSITEARKHCNPRAIVVINPGNPTGQVLTKENVVDVIKFAYK 296

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
           EKLFL ADEVYQDNVYAEGS FYSFKKVL E+G PY  MELASFMSCSKGYMGECGLRGG
Sbjct: 297 EKLFLLADEVYQDNVYAEGSTFYSFKKVLTELGSPYSEMELASFMSCSKGYMGECGLRGG 356

Query: 250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ 309
           Y+EVINLDP VKAML KS+SAMLCPTVL                                
Sbjct: 357 YTEVINLDPEVKAMLLKSVSAMLCPTVL-------------------------------- 384

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA 369
             GQTVMDCVVNPPQPGEPSYE F +EK  VL SL +RAK+VADTFNSI GMSCNPVQGA
Sbjct: 385 --GQTVMDCVVNPPQPGEPSYESFQKEKNCVLKSLAERAKLVADTFNSIPGMSCNPVQGA 442

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           MYAFP  KLP KAI +AK +G  P+  YAF+LLE TGICIVPG+GFGQV GTYHFR  +
Sbjct: 443 MYAFPLFKLPEKAIKEAKNQGIEPNAFYAFQLLENTGICIVPGSGFGQVEGTYHFRTTI 501

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964715|ref|XP_316880.5| AGAP000901-PA [Anopheles gambiae str. PEST] gi|333469475|gb|EAA12069.5| AGAP000901-PA [Anopheles gambiae str. PEST]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/427 (64%), Positives = 329/427 (77%), Gaps = 35/427 (8%)

Query: 3   PVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHV 62
           P  +   QVL LVS P LF+DP  P D KQRA+A+LDGC+G SVGSY+DS GIE+IRRH 
Sbjct: 134 PPITFIRQVLGLVSYPPLFNDPSIPTDAKQRARAILDGCKGGSVGSYSDSAGIEVIRRHA 193

Query: 63  AQYISRRDGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL 121
           A+YI RRDG  PADWQ++ILSAGAS GIK ++ LL   +DGKKPGV+IPIPQYPLYSA++
Sbjct: 194 AEYIQRRDGGIPADWQNIILSAGASGGIKVLMALLRCPIDGKKPGVMIPIPQYPLYSATI 253

Query: 122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ 181
           AEF+MEQIGYYLDE+ +WGL I+ELERS+ EARK   PR +V+INPGNPTGQVL++ NI+
Sbjct: 254 AEFDMEQIGYYLDEANKWGLDIAELERSLKEARKTSAPRILVVINPGNPTGQVLSRSNIE 313

Query: 182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM 241
           DIIKFA RE+L LFADEVYQDNVY  GS+F+SFKKV++EMGEPY  MEL SFMSCSKGYM
Sbjct: 314 DIIKFAQRERLVLFADEVYQDNVYESGSQFHSFKKVMMEMGEPYSKMELCSFMSCSKGYM 373

Query: 242 GECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQA 301
           GECG+RGGY+E++NL P V+ ML K ISA LCPT                          
Sbjct: 374 GECGIRGGYAEIVNLCPDVRTMLLKCISAQLCPT-------------------------- 407

Query: 302 VLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGM 361
                   + GQ V+DCVVNPP+ GEPSYEQF +EK SVL+SL++RA++VA TFNSIEG 
Sbjct: 408 --------TAGQAVLDCVVNPPRKGEPSYEQFEKEKASVLESLRERAELVARTFNSIEGF 459

Query: 362 SCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGT 421
           SCNPVQGAMYAFPQ++LPAKA+  AK +GK     YAF+LLE TGICIVPG+GFGQ PGT
Sbjct: 460 SCNPVQGAMYAFPQIRLPAKALEAAKKDGKPADTFYAFQLLEETGICIVPGSGFGQRPGT 519

Query: 422 YHFRQQV 428
           YHFR  +
Sbjct: 520 YHFRTTI 526

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019637|ref|XP_002430266.1| Alanine aminotransferase, putative [Pediculus humanus corporis] gi|212515373|gb|EEB17528.1| Alanine aminotransferase, putative [Pediculus humanus corporis]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/419 (64%), Positives = 326/419 (77%), Gaps = 34/419 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVLALVSLP LFDDP FP+D K RA+ VL GC+G SVGSYTDS GIEIIR+HVA++I RR
Sbjct: 75  QVLALVSLPSLFDDPSFPEDAKDRARGVLKGCKGGSVGSYTDSVGIEIIRKHVAEFIERR 134

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG P+D+ ++ILSAGASDGIK+VLK++ + +D K+PGV++PIPQYPLYSA+LAEFNM QI
Sbjct: 135 DGIPSDYANIILSAGASDGIKNVLKIMNQPIDNKRPGVMVPIPQYPLYSATLAEFNMHQI 194

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
            YYL+ESK WG+ +SEL+R++ EA++   PRAIV+INPGNPTGQVL+++NI++II+FA++
Sbjct: 195 SYYLNESKGWGMDLSELQRAVDEAKEVSAPRAIVVINPGNPTGQVLSRKNIEEIIQFAYK 254

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
           E+LF+ ADEVYQDN+YA GSKFYSFKKVL EMG PY  MELASFMSCSKGYMGECGLRG 
Sbjct: 255 ERLFILADEVYQDNIYAPGSKFYSFKKVLTEMGPPYSEMELASFMSCSKGYMGECGLRGA 314

Query: 250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ 309
           Y E+IN+ P VKA L K+ISAMLCPT L                                
Sbjct: 315 YFEIINICPQVKAQLLKAISAMLCPTAL-------------------------------- 342

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA 369
             GQTV++C+VNPP+ GEPSY  +  E++ VL  LK+RAKMVADTFNSI G SCN VQGA
Sbjct: 343 --GQTVVECIVNPPREGEPSYPLYKEEREQVLSELKKRAKMVADTFNSIPGFSCNEVQGA 400

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           MYAFPQM+LP KA+  AK EGK P   YA +LLE TGICIVPG+GFGQ PGT+HFR  +
Sbjct: 401 MYAFPQMQLPPKAVEAAKKEGKAPDTFYALQLLENTGICIVPGSGFGQQPGTHHFRTTI 459

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124459|ref|XP_001660470.1| alanine aminotransferase [Aedes aegypti] gi|108873981|gb|EAT38206.1| AAEL009872-PA [Aedes aegypti]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/421 (64%), Positives = 322/421 (76%), Gaps = 35/421 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVL LVS P LF+D   P+D K+RA+ +L GC+G SVGSYTDS GIEIIR+HVAQYI  R
Sbjct: 133 QVLGLVSYPPLFEDKSIPEDAKKRARDILSGCKGHSVGSYTDSNGIEIIRKHVAQYIQDR 192

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  P+D  ++ILSAGAS GIK ++ LL   +DGK PGV+IPIPQYPLYSA++AEF M Q
Sbjct: 193 DGGVPSDPNNIILSAGASGGIKVLMSLLRCPIDGKTPGVMIPIPQYPLYSATIAEFEMAQ 252

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           +GYYLDE+ +WGL I+ELERS+ EA+K C PR +V+INPGNPTGQVL+++NI++IIKFAH
Sbjct: 253 VGYYLDEANKWGLDIAELERSLNEAKKTCAPRILVVINPGNPTGQVLSRDNIENIIKFAH 312

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG 248
           +EKL LFADEVYQDNVY +GSKF+SFKKV++EMG PY  MEL SFMSCSKGYMGECG+RG
Sbjct: 313 KEKLVLFADEVYQDNVYEQGSKFHSFKKVMMEMGAPYNQMELCSFMSCSKGYMGECGIRG 372

Query: 249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG 308
           GY+EV+N+ P VKAML K ISA LCPT                                 
Sbjct: 373 GYAEVVNMCPDVKAMLLKCISAQLCPT--------------------------------- 399

Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG 368
            ++GQ  MD VVNPP+PGEPSYEQF +EK +VL SLK RA+MVA TFNSIEG SCNPVQG
Sbjct: 400 -TIGQACMDVVVNPPKPGEPSYEQFMKEKNAVLASLKVRAEMVASTFNSIEGFSCNPVQG 458

Query: 369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           AMY FPQ++LP KAI  AK  G+ P V YAF+LLE+TGICIVPG+GFGQ PGTYHFR  +
Sbjct: 459 AMYCFPQIRLPEKAIEAAKKAGQAPDVFYAFQLLEQTGICIVPGSGFGQRPGTYHFRTTI 518

Query: 429 W 429
            
Sbjct: 519 L 519

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170057848|ref|XP_001864663.1| alanine aminotransferase [Culex quinquefasciatus] gi|170065314|ref|XP_001867887.1| alanine aminotransferase [Culex quinquefasciatus] gi|167877173|gb|EDS40556.1| alanine aminotransferase [Culex quinquefasciatus] gi|167882404|gb|EDS45787.1| alanine aminotransferase [Culex quinquefasciatus]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/421 (65%), Positives = 325/421 (77%), Gaps = 35/421 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVL LVS P LFDD   P+D KQRA+ +L GC+G SVGSYTDS GIE+IR+HVAQYI  R
Sbjct: 138 QVLGLVSYPPLFDDKSIPEDAKQRARDILKGCKGGSVGSYTDSNGIEVIRQHVAQYIQDR 197

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  P+D  ++ILSAGAS GIK ++ LL   +DGKKPGV+IPIPQYPLYSA++AEF MEQ
Sbjct: 198 DGGIPSDPANIILSAGASGGIKVLMSLLRCPIDGKKPGVMIPIPQYPLYSATIAEFEMEQ 257

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
            GYYLDE+ +WGL I+EL+RS+ EA+  C PR +V+INPGNPTGQVL+KENIQ+IIKFAH
Sbjct: 258 CGYYLDEANKWGLDITELKRSLAEAKTKCAPRILVVINPGNPTGQVLSKENIQEIIKFAH 317

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG 248
           +EKL LFADEVYQDNVY +GS+F+SFKKVL+EMG PY +MEL SFMSCSKGYMGECG+RG
Sbjct: 318 QEKLVLFADEVYQDNVYEKGSQFHSFKKVLMEMGAPYNTMELCSFMSCSKGYMGECGIRG 377

Query: 249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG 308
           GY+E++NL P VKAML K ISA LCPT                                 
Sbjct: 378 GYAEIVNLCPDVKAMLLKCISAQLCPT--------------------------------- 404

Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG 368
            ++GQ  MD VV+PP+ GEPSYE F +EK +VL+SLK RA+MVA+TFNSIEG SCNPVQG
Sbjct: 405 -TIGQACMDVVVHPPRKGEPSYELFMKEKTAVLESLKVRAEMVAETFNSIEGFSCNPVQG 463

Query: 369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           AMYAFPQ++LPAKAI  AK  G+ P V YAF+LLE+TGICIVPG+GFGQ PGTYHFR  +
Sbjct: 464 AMYAFPQIRLPAKAIEAAKKAGQAPDVFYAFQLLEQTGICIVPGSGFGQRPGTYHFRTTI 523

Query: 429 W 429
            
Sbjct: 524 L 524

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853974|ref|XP_003702497.1| PREDICTED: alanine aminotransferase 2-like [Megachile rotundata]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/419 (60%), Positives = 310/419 (73%), Gaps = 34/419 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVL L   P L DDPR+P+D K+RA+ +LDGC+G S+GSYT+SPGIEIIRRHVAQYI  R
Sbjct: 132 QVLTLTVSPSLLDDPRYPEDAKERARVLLDGCKGGSIGSYTESPGIEIIRRHVAQYIQNR 191

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG P+D+++VILS GASD IKS LKL  E +DGK  GV+IPIPQYPLYSA+L EF + QI
Sbjct: 192 DGIPSDYRNVILSNGASDAIKSFLKLFNEKLDGKASGVMIPIPQYPLYSATLTEFGLCQI 251

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
           GYYLDE  +W L ISEL+R++ E+RK+CNPR +V+INPGNPTGQVLT+ NI+DII+FA +
Sbjct: 252 GYYLDEENKWALNISELQRALDESRKYCNPRVLVVINPGNPTGQVLTRSNIEDIIRFAQK 311

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
             LF+ ADEVYQDNVY + S F+SFKKV+ EMGEPY  MELASFMS SKGYMGECG+RGG
Sbjct: 312 NHLFILADEVYQDNVYDKDSAFHSFKKVMTEMGEPYSKMELASFMSISKGYMGECGIRGG 371

Query: 250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ 309
           Y+E+IN+DP V A+L K+IS  LCPTVL                                
Sbjct: 372 YAEIINMDPSVMAILMKAISVTLCPTVL-------------------------------- 399

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA 369
             GQ VMD VVNPP+P EPSYEQF REK+  L +L +++++V DT N+I G   NP  GA
Sbjct: 400 --GQIVMDVVVNPPKPNEPSYEQFKREKELTLRNLAEKSQLVVDTLNTIPGFRANPAMGA 457

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           MY FP++ LP KAI +AKA+G  P   YAF+LLE TGIC++PG+GFGQ PGTYHFR  +
Sbjct: 458 MYVFPRIDLPQKAIEEAKAKGMEPDAAYAFKLLEATGICVIPGSGFGQKPGTYHFRTTI 516

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460188|gb|EFX71233.1| hypothetical protein DAPPUDRAFT_309150 [Daphnia pulex]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/419 (60%), Positives = 317/419 (75%), Gaps = 36/419 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV++LV+ P L     FP+DVK RA+A+L+  RG S G Y+DS G+E++R HVA+YI RR
Sbjct: 77  QVISLVAYPDLLSSKEFPEDVKSRARAILESSRG-SAGCYSDSAGLELVRNHVAKYIERR 135

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG PAD  ++IL AGAS+GI+S LK+L   + G + G++IPIPQYPLYSAS+ E+NMEQ 
Sbjct: 136 DGFPADPSNIILCAGASEGIRSTLKML-STISGPRTGIMIPIPQYPLYSASIVEYNMEQA 194

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
           GYYLDE   WGL ++ELER++ EARK CN R IV+INPGNPTGQVLT++NI ++IKFAHR
Sbjct: 195 GYYLDEDNDWGLDVAELERAVKEARKRCNVRGIVVINPGNPTGQVLTRDNIVEVIKFAHR 254

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
           EKLF+FADEVYQDNVYA+  +F+SFKKV  E+G+PY  +ELASF+SCSKGYMGECGLRGG
Sbjct: 255 EKLFIFADEVYQDNVYADNREFHSFKKVTKELGDPYDKLELASFLSCSKGYMGECGLRGG 314

Query: 250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ 309
           Y+E++N+DP VKA+  KSISA LCPTVL                                
Sbjct: 315 YAEIVNMDPEVKALYLKSISAKLCPTVL-------------------------------- 342

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA 369
             GQ VMDCVVNPPQPGEPSYE FS+EK +VL SL +RA M+A  FNSI G+ CN VQGA
Sbjct: 343 --GQAVMDCVVNPPQPGEPSYELFSKEKAAVLKSLSERASMIAKAFNSIPGIKCNTVQGA 400

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           MYAFP++K+P KA+AKAK+ G+ P V +AF+LLE+TG+C VPG+GFGQ PGTYHFR  +
Sbjct: 401 MYAFPEVKIPEKAVAKAKSLGQAPDVFFAFQLLEQTGMCCVPGSGFGQRPGTYHFRTTI 459

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411444|ref|XP_003489354.1| PREDICTED: alanine aminotransferase 2-like [Bombus impatiens]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/419 (60%), Positives = 311/419 (74%), Gaps = 34/419 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVL L   P L DDP +P+DVK+RA+ +L  C+G SVGSY++S GIEIIR+HVAQYI  R
Sbjct: 132 QVLTLTVSPSLLDDPSYPEDVKERAKTILCQCKGGSVGSYSESAGIEIIRKHVAQYIQDR 191

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG P+D+ ++ILS GASDGIKS LKL  E +DGK  GV+IPIPQYPLYSA+LAEF + QI
Sbjct: 192 DGIPSDYHNIILSNGASDGIKSFLKLFNEKLDGKPSGVMIPIPQYPLYSATLAEFGLAQI 251

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
           GYYL+E  +WGL ISEL+R++ E+R+ CNPR +V+INPGNPTGQVLT+ NI+D+I+FA++
Sbjct: 252 GYYLNEENKWGLDISELDRALNESRRSCNPRVLVVINPGNPTGQVLTRANIEDVIRFAYK 311

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
            +LFL ADEVYQDNVY + S F+SFKKV++EMGEPY  MELASFMS SKGYMGECG+RGG
Sbjct: 312 NRLFLLADEVYQDNVYDKDSAFHSFKKVMMEMGEPYCKMELASFMSVSKGYMGECGIRGG 371

Query: 250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ 309
           Y E+IN+DP V A+L KSISAMLCPTVL                                
Sbjct: 372 YGEIINMDPKVMAILLKSISAMLCPTVL-------------------------------- 399

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA 369
             GQ VMD VVNPP+P EPSY+ F +EK+  L SL +R+++V DT NSI G   NP  GA
Sbjct: 400 --GQVVMDVVVNPPKPNEPSYKLFQKEKEETLRSLAERSQLVVDTLNSIPGFKVNPAMGA 457

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           MY FP++ LP +AI  A+ EG+ P V YAF+LLE TGIC++PG+GFGQ PGTYHFR  +
Sbjct: 458 MYVFPRIDLPKRAIQAAEKEGQQPDVFYAFKLLETTGICVIPGSGFGQRPGTYHFRTTI 516

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191465|gb|EFN75006.1| Alanine aminotransferase 2 [Camponotus floridanus]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/420 (59%), Positives = 306/420 (72%), Gaps = 35/420 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVL L   P L DDP +P+D K+RA+ VL+GC+G SVGSY++S GIE+IR+HVA YI +R
Sbjct: 140 QVLTLAVSPNLLDDPSYPEDAKKRARTVLNGCKGGSVGSYSESAGIEVIRKHVAHYIQQR 199

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  P D+ +VILS GASDGIKS LKL  E +D K  GVL+PIPQYPLYSA+LAEF + Q
Sbjct: 200 DGGIPCDYHNVILSNGASDGIKSFLKLFNEKIDNKPSGVLVPIPQYPLYSATLAEFGLAQ 259

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           IGYYLDE  +W L ISELER + E +  CNPR +V+INPGNPTGQVLT+ NI+++I+FAH
Sbjct: 260 IGYYLDEDNKWSLEISELERVLKEYKGTCNPRVLVVINPGNPTGQVLTRANIENVIRFAH 319

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG 248
           +  LFL ADEVYQDN+Y + S F+SFKKV+ EMGEPY  MELASFMS SKGYMGECG+RG
Sbjct: 320 KNHLFLLADEVYQDNIYDKDSAFHSFKKVMTEMGEPYSKMELASFMSISKGYMGECGIRG 379

Query: 249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG 308
           GY+E+IN+DP V  +L KSISAMLCP+VL                               
Sbjct: 380 GYAEIINMDPEVMKVLLKSISAMLCPSVL------------------------------- 408

Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG 368
              GQ VMD VVNPPQP EPSYE+F +EK+  L SL +R+++V DT NSI G   NP  G
Sbjct: 409 ---GQVVMDVVVNPPQPNEPSYEKFQKEKKETLRSLAKRSRLVVDTINSIPGYKTNPAMG 465

Query: 369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           AMY FP++ LP KAI  A+A+G+ P V YAF+LLE TGIC++PG+GFGQ PGTYHFR  +
Sbjct: 466 AMYVFPRLDLPPKAIEAARAKGQEPDVFYAFKLLESTGICVIPGSGFGQKPGTYHFRTTI 525

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729753|ref|XP_003403160.1| PREDICTED: alanine aminotransferase 2-like [Bombus terrestris]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/419 (60%), Positives = 309/419 (73%), Gaps = 34/419 (8%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QVL L   P L DDP +P+DVK+RA+ +L  C+G SVGSY++S GIEIIR+HVAQYI  R
Sbjct: 133 QVLTLTVSPNLLDDPSYPEDVKERAKTILCQCKGGSVGSYSESAGIEIIRKHVAQYIQDR 192

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           DG P+D+ ++ILS GASDGIKS LKL  E +DGK  GV+IPIPQYPLYSA+LAEF + QI
Sbjct: 193 DGIPSDYHNIILSNGASDGIKSFLKLFNEKLDGKPSGVMIPIPQYPLYSATLAEFGLAQI 252

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
           GYYL+E  +WGL ISEL+R++ E+R+ CNPR +V+INPGNPTGQVLT+ NI+DII+FA++
Sbjct: 253 GYYLNEENKWGLDISELDRALNESRRLCNPRVLVVINPGNPTGQVLTRTNIEDIIRFAYK 312

Query: 190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
            +LFL ADEVYQDNVY + S F+SFKKV++EMGEPY  MELASFMS SKGYMGECG+RGG
Sbjct: 313 NRLFLLADEVYQDNVYDKDSAFHSFKKVMMEMGEPYCKMELASFMSVSKGYMGECGIRGG 372

Query: 250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ 309
           Y E+IN+DP V A+L KSISAMLCPTVL                                
Sbjct: 373 YGEIINMDPKVMAILLKSISAMLCPTVL-------------------------------- 400

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA 369
             GQ VMD VVNPP+  EPSY+ F +EK+  L SL +R+++V DT NSI G   NP  GA
Sbjct: 401 --GQVVMDVVVNPPKLNEPSYKLFQKEKKETLRSLAERSQLVVDTLNSIPGFKVNPAMGA 458

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           MY FP++ LP  AI  A+ EG+ P V YAF+LLE TGIC++PG+GFGQ PGTYHFR  +
Sbjct: 459 MYVFPRIDLPKGAIKAAEKEGQQPDVFYAFKLLESTGICVIPGSGFGQRPGTYHFRTTI 517

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	509
FB|FBgn0030478	575	CG1640 [Drosophila melanogaste	0.528	0.467	0.611	6.4e-125
UNIPROTKB|Q28DB5	524	gpt2 "Alanine aminotransferase	0.528	0.513	0.583	5.5e-113
ZFIN|ZDB-GENE-030729-8	545	gpt2 "glutamic pyruvate transa	0.534	0.499	0.541	8.9e-113
UNIPROTKB|E1BU49	544	GPT2 "Uncharacterized protein"	0.526	0.492	0.559	2.3e-112
UNIPROTKB|F1RP04	523	GPT2 "Uncharacterized protein"	0.526	0.512	0.548	3.8e-112
UNIPROTKB|Q6GM82	540	gpt2 "Alanine aminotransferase	0.554	0.522	0.558	4.9e-112
UNIPROTKB|A4IFH5	496	GPT "Alanine aminotransferase	0.552	0.566	0.577	1e-111
UNIPROTKB|E1BF40	523	GPT2 "Uncharacterized protein"	0.526	0.512	0.548	1.3e-111
UNIPROTKB|P24298	496	GPT "Alanine aminotransferase	0.548	0.562	0.571	4.3e-111
MGI|MGI:1915391	522	Gpt2 "glutamic pyruvate transa	0.526	0.513	0.535	7.1e-111

FB|FBgn0030478 CG1640 [Drosophila melanogaster (taxid:7227)]

 Score = 907 (324.3 bits), Expect = 6.4e-125, Sum P(2) = 6.4e-125
 Identities = 165/270 (61%), Positives = 216/270 (80%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA-DWQDVI 80
             D P +P+DVK+RA A+L+GC+GQSVGSYTDS G+E++RR VAQYI +RDG  A +WQD+ 
Sbjct:   176 DSPDYPEDVKKRACAILNGCQGQSVGSYTDSAGLEVVRRQVAQYIEKRDGGIASNWQDIY 235

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             L+ GAS GIKS+L ++  +V  K PGV++PIPQYPLYSA+++E+ M ++ YYL+E   W 
Sbjct:   236 LTGGASPGIKSILSMINAEVGCKAPGVMVPIPQYPLYSATISEYGMTKVDYYLEEETGWS 295

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L   EL+RS  EA+K CNPRA+V+INPGNPTGQVLT+ENI++IIKFAH  K+ + ADEVY
Sbjct:   296 LDRKELQRSYDEAKKVCNPRALVVINPGNPTGQVLTRENIEEIIKFAHDNKVLVLADEVY 355

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV 260
             QDNVY + SKF+SFKKV  EMG+PY+++E+ SF+S SKGY+GECG+RGGY EV+NLDP V
Sbjct:   356 QDNVYDKNSKFWSFKKVAYEMGDPYRNLEMVSFLSTSKGYLGECGIRGGYMEVLNLDPKV 415

Query:   261 KAMLHKSISAMLCPTVLALVSLPQLFDDPR 290
             KAML KSI+A LC T    V++  L + P+
Sbjct:   416 KAMLTKSITAALCSTTAGQVAVSALVNPPQ 445

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q28DB5 gpt2 "Alanine aminotransferase 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 815 (292.0 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
 Identities = 158/271 (58%), Positives = 199/271 (73%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDVI 80
             +D +FP+DVKQ+A  +L  C G S+G+Y+ S GIE+IR+ VA+YI RRDG   +D  ++ 
Sbjct:   124 NDNKFPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERRDGGIQSDPNNIY 183

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             LS GASD I ++LKLL+      + GVLIPIPQYPLYSA+LAE N  Q+ YYLDE   W 
Sbjct:   184 LSTGASDSIVTMLKLLVSGQGKSRTGVLIPIPQYPLYSAALAELNAVQVNYYLDEENCWA 243

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L I+EL RS+TEARKHC+P+ + IINPGNPTGQV +++ I+D+I+FA  E LFL ADEVY
Sbjct:   244 LDINELRRSLTEARKHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAAEENLFLMADEVY 303

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVYA+G  F+SFKKVL EMG  Y +++ELASF S SKGYMGECG RGGY EVIN+DP 
Sbjct:   304 QDNVYAKGCTFHSFKKVLFEMGPKYSETVELASFHSTSKGYMGECGFRGGYMEVINMDPA 363

Query:   260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPR 290
             VK  L K +S  LCP V     L  + + P+
Sbjct:   364 VKQQLTKLVSVRLCPPVPGQALLDVIVNPPK 394

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0042851 "L-alanine metabolic process" evidence=ISS

ZFIN|ZDB-GENE-030729-8 gpt2 "glutamic pyruvate transaminase (alanine aminotransferase) 2" [Danio rerio (taxid:7955)]

 Score = 800 (286.7 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 149/275 (54%), Positives = 200/275 (72%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD-GQPADWQDVI 80
             + P FP+D K RA+ +L GC G S+GSY+ S G+E IR+ +A YI +RD G P++W+D+ 
Sbjct:   142 ESPSFPEDAKWRARRILQGCGGHSLGSYSASAGVEYIRKDIAAYIEQRDEGVPSNWEDIY 201

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             L+ GASDGI ++L+LL+   D  + GV+IPIPQYPLYSA+++E +  Q+ YYLDE   W 
Sbjct:   202 LTTGASDGIMTILRLLVSGKDSSRTGVMIPIPQYPLYSAAISEMDAVQVNYYLDEDNCWA 261

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L I+EL R+   A++HC PR I IINPGNPTGQV +K+ I++++ FA+ E LF+ +DEVY
Sbjct:   262 LDINELHRAYQAAKQHCQPRVICIINPGNPTGQVQSKKCIEEVLHFAYEENLFVMSDEVY 321

Query:   201 QDNVYAEGSKFYSFKKVLVEMG-EPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVYA   +F+SFKKVL EMG E Y S+ELASF S SKGY GECG RGGY EVIN+DP 
Sbjct:   322 QDNVYAPDCQFHSFKKVLYEMGPEYYNSVELASFHSTSKGYTGECGFRGGYMEVINMDPE 381

Query:   260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDD 294
             VKA L K +S  LCP +    ++  + + P+ PD+
Sbjct:   382 VKAQLVKLLSVRLCPPLSGQAAMDVIVNPPQ-PDE 415

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BU49 GPT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 790 (283.2 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
 Identities = 151/270 (55%), Positives = 193/270 (71%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDVI 80
             D P FP+D K+RA+ +L GC G S+G+YT S GI  IR  VA YI RRDG  PAD  ++ 
Sbjct:   144 DSPSFPEDAKKRARRILQGCGGNSLGAYTASQGINCIREDVASYIERRDGGVPADPDNIY 203

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             L+ GASDGI S+LK+L+      + GV+IPIPQYPLYSA ++E +  Q+ YYLDE   W 
Sbjct:   204 LTTGASDGITSILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWS 263

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L ++EL RS+ EA+ +CNP+ + IINPGNPTGQV +++ I+D+I FA  EKLFL ADEVY
Sbjct:   264 LDVNELRRSLNEAKAYCNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVY 323

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVY+EG +F+SFKKVL EMG  Y + +ELASF S SKGYMGECG RGGY EV+NL P 
Sbjct:   324 QDNVYSEGCQFHSFKKVLYEMGPEYSNNVELASFHSTSKGYMGECGYRGGYMEVLNLHPD 383

Query:   260 VKAMLHKSISAMLCPTVLALVSLPQLFDDP 289
             +K  L K +S  LCP V    ++  + + P
Sbjct:   384 IKGQLVKLLSVRLCPPVSGQAAMDIVVNPP 413

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0042851 "L-alanine metabolic process" evidence=IEA

UNIPROTKB|F1RP04 GPT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 776 (278.2 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
 Identities = 148/270 (54%), Positives = 192/270 (71%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDVI 80
             D P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA YI+RRDG  PAD  ++ 
Sbjct:   123 DSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIY 182

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             L+ GASDGI ++LK+L+      + GV+IPIPQYPLYSA ++E +  Q+ YYLDE   W 
Sbjct:   183 LTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEDNCWA 242

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L ++EL R++ +A++HCNP+ + IINPGNPTGQV +++ I+D+I FA  EKLFL ADEVY
Sbjct:   243 LNVNELRRAVRQAKEHCNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVY 302

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVY+   KF+SFKKVL EMG  Y S +ELASF S SKGYMGECG RGGY EVINL P 
Sbjct:   303 QDNVYSPDCKFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE 362

Query:   260 VKAMLHKSISAMLCPTVLALVSLPQLFDDP 289
             +K  L K +S  LCP V    ++  + + P
Sbjct:   363 IKGQLVKLLSVRLCPPVSGQAAMDIVVNPP 392

GO:0042851 "L-alanine metabolic process" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q6GM82 gpt2 "Alanine aminotransferase 2" [Xenopus laevis (taxid:8355)]

 Score = 804 (288.1 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
 Identities = 162/290 (55%), Positives = 208/290 (71%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQDVI 80
             +D +FP+DVKQ+A  +L  C G S+G+Y+ S GIE+IR+ VA+YI RRDG   +D  ++ 
Sbjct:   140 NDNKFPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERRDGGILSDPNNIY 199

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             LS GASD I ++LKLL+      + GV+IPIPQYPLYSA+LAE +  Q+ YYLDE   W 
Sbjct:   200 LSTGASDSIVTMLKLLVSGQGKSRTGVMIPIPQYPLYSAALAELDAVQVNYYLDEENCWA 259

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L I+EL R++ EARKHC+P+ + IINPGNPTGQV +++ I+D+I+FA  E LFL ADEVY
Sbjct:   260 LDINELRRALAEARKHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAAEENLFLMADEVY 319

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVYA+G  F+SFKKVL EMG  Y +++ELASF S SKGYMGECG RGGY EVIN+DP 
Sbjct:   320 QDNVYAKGCAFHSFKKVLFEMGPKYSETLELASFHSTSKGYMGECGFRGGYMEVINMDPA 379

Query:   260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDD--VKQ---RAQAVLD 304
             VK  L K +S  LCP V   V L  + + P+ P +   KQ     QAVL+
Sbjct:   380 VKQQLTKLVSVRLCPPVPGQVLLDVIVNPPK-PGEPSYKQFISEKQAVLN 428

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0042851 "L-alanine metabolic process" evidence=ISS

UNIPROTKB|A4IFH5 GPT "Alanine aminotransferase 1" [Bos taurus (taxid:9913)]

 Score = 832 (297.9 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
 Identities = 167/289 (57%), Positives = 208/289 (71%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDVI 80
             + P FPDD K+RA+ +L  C G S+G+Y+ S G+++IR  VA+YI RRDG  PAD  ++ 
Sbjct:    96 NSPDFPDDAKRRAERILQACGGHSLGAYSISAGVQMIREDVARYIERRDGGIPADPNNIF 155

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             LS GASD I +VLKLL+      + GVLIPIPQYPLYSA+LAEFN  Q+ YYLDE + W 
Sbjct:   156 LSTGASDAIVTVLKLLVTGEGRTRTGVLIPIPQYPLYSAALAEFNAVQVDYYLDEERAWA 215

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L ++EL R++ +AR HC PRA+ +INPGNPTGQV T+E I+D+I+FA+ EKLFL ADEVY
Sbjct:   216 LDVAELRRALRQARDHCRPRALCVINPGNPTGQVQTRECIEDVIRFAYEEKLFLLADEVY 275

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPYKSM-ELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVYAE S+F+SFKKVL EMG PY +  ELASF S SKGYMGECG RGGY EV+N+D  
Sbjct:   276 QDNVYAESSQFHSFKKVLTEMGPPYAAQQELASFHSISKGYMGECGFRGGYVEVVNMDAA 335

Query:   260 VKAMLHKSISAMLCPT----VLALVSL-PQLFDDPRFPDDVKQRAQAVL 303
             VK  + K  S  LCP     VL  V++ P    DP FP    +R +AVL
Sbjct:   336 VKQQMQKLRSVRLCPPTPGQVLLDVAVSPPAPSDPSFPRFQAER-RAVL 383

GO:0042853 "L-alanine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E1BF40 GPT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 777 (278.6 bits), Expect = 1.3e-111, Sum P(2) = 1.3e-111
 Identities = 148/270 (54%), Positives = 192/270 (71%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDVI 80
             D P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA YI+RRDG  PAD  ++ 
Sbjct:   123 DSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIY 182

Query:    81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
             L+ GASDGI ++LK+L+      + GV+IPIPQYPLYSA ++E +  Q+ YYLDE   W 
Sbjct:   183 LTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEDNCWA 242

Query:   141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             L ++EL R++ +A++HCNP+ + IINPGNPTGQV +++ I+D+I FA  EKLFL ADEVY
Sbjct:   243 LNVNELRRAVQQAKEHCNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVY 302

Query:   201 QDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
             QDNVY+   KF+SFKKVL EMG  Y S +ELASF S SKGYMGECG RGGY EVINL P 
Sbjct:   303 QDNVYSSDCKFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE 362

Query:   260 VKAMLHKSISAMLCPTVLALVSLPQLFDDP 289
             +K  L K +S  LCP V    ++  + + P
Sbjct:   363 IKGQLVKLLSVRLCPPVSGQAAMDIVVNPP 392

GO:0042851 "L-alanine metabolic process" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|P24298 GPT "Alanine aminotransferase 1" [Homo sapiens (taxid:9606)]

 Score = 808 (289.5 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
 Identities = 164/287 (57%), Positives = 202/287 (70%)

Query:    24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDVILS 82
             P FPDD K+RA+ +L  C G S+G+Y+ S GI++IR  VA+YI RRDG  PAD  +V LS
Sbjct:    98 PNFPDDAKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLS 157

Query:    83 AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
              GASD I +VLKLL+      + GVLIPIPQYPLYSA+LAE    Q+ YYLDE + W L 
Sbjct:   158 TGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALD 217

Query:   143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
             ++EL R++ +AR HC PRA+ +INPGNPTGQV T+E I+ +I+FA  E+LFL ADEVYQD
Sbjct:   218 VAELHRALGQARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQD 277

Query:   203 NVYAEGSKFYSFKKVLVEMGEPYKSM-ELASFMSCSKGYMGECGLRGGYSEVINLDPGVK 261
             NVYA GS+F+SFKKVL+EMG PY    ELASF S SKGYMGECG RGGY EV+N+D  V+
Sbjct:   278 NVYAAGSQFHSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQ 337

Query:   262 AMLHKSISAMLCPTV-----LALVSLPQLFDDPRFPDDVKQRAQAVL 303
               + K +S  LCP V     L LV  P    DP F     ++ QAVL
Sbjct:   338 QQMLKLMSVRLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEK-QAVL 383

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042853 "L-alanine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0006807 "nitrogen compound metabolic process" evidence=NAS

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=EXP;NAS

GO:0006094 "gluconeogenesis" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1915391 Gpt2 "glutamic pyruvate transaminase (alanine aminotransferase) 2" [Mus musculus (taxid:10090)]

 Score = 765 (274.4 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
 Identities = 144/269 (53%), Positives = 190/269 (70%)

Query:    22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL 81
             + P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA +I+RRDG PAD  ++ L
Sbjct:   123 NSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAFITRRDGVPADPDNIYL 182

Query:    82 SAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGL 141
             + GASDGI ++LKLL+      + GV+IPIPQYPLYSA ++E +  Q+ YYLDE   W L
Sbjct:   183 TTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVISELDAVQVNYYLDEENCWAL 242

Query:   142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
              + EL R++ +A+ HC+P+ + IINPGNPTGQV +++ I+D+I FA  EKLFL ADEVYQ
Sbjct:   243 NVDELRRALRQAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 302

Query:   202 DNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLRGGYSEVINLDPGV 260
             DNVY+   +F+SFKKVL +MG  Y S +ELASF S SKGYMGECG RGGY EVINL P +
Sbjct:   303 DNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEI 362

Query:   261 KAMLHKSISAMLCPTVLALVSLPQLFDDP 289
             K  L K +S  LCP V    ++  + + P
Sbjct:   363 KGQLVKLLSVRLCPPVSGQAAMDIVVNPP 391

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042851 "L-alanine metabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52892	ALAT_YEAST	2, ., 6, ., 1, ., 2	0.3752	0.7838	0.7869	yes	N/A
A4IFH5	ALAT1_BOVIN	2, ., 6, ., 1, ., 2	0.5165	0.7583	0.7782	yes	N/A
P24298	ALAT1_HUMAN	2, ., 6, ., 1, ., 2	0.5249	0.7563	0.7762	yes	N/A
Q54MJ7	ALAM_DICDI	2, ., 6, ., 1, ., 2	0.4597	0.7426	0.7078	yes	N/A
Q28DB5	ALAT2_XENTR	2, ., 6, ., 1, ., 2	0.5320	0.7563	0.7347	yes	N/A
Q8BGT5	ALAT2_MOUSE	2, ., 6, ., 1, ., 2	0.5142	0.7563	0.7375	yes	N/A
Q9LR30	GGT1_ARATH	2, ., 6, ., 1, ., -	0.4423	0.7485	0.7920	yes	N/A
Q10334	ALAT_SCHPO	2, ., 6, ., 1, ., 2	0.3596	0.7328	0.7386	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.921
4th Layer	2.6.1.2	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	509
PTZ00377	481	PTZ00377, PTZ00377, alanine aminotransferase; Prov	0.0
PLN02231	534	PLN02231, PLN02231, alanine transaminase	1e-126
PLN02368	407	PLN02368, PLN02368, alanine transaminase	1e-125
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	4e-51
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	6e-44
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	7e-35
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	4e-29
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	2e-26
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	1e-25
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	7e-25
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	5e-24
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	7e-22
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	7e-21
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	1e-20
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	9e-18
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	4e-17
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	7e-17
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	2e-16
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	8e-16
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	2e-15
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	3e-14
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	5e-14
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	1e-13
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	2e-13
PRK07683	387	PRK07683, PRK07683, aminotransferase A; Validated	3e-13
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	2e-12
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	2e-12
PLN02376	496	PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl	7e-12
PLN02607	447	PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl	4e-11
PRK06358	354	PRK06358, PRK06358, threonine-phosphate decarboxyl	8e-11
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	5e-10
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	1e-09
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	2e-09
TIGR03537	350	TIGR03537, DapC, succinyldiaminopimelate transamin	3e-09
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	5e-09
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	8e-09
PRK07681	399	PRK07681, PRK07681, aspartate aminotransferase; Pr	2e-08
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	4e-08
PLN02450	468	PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl	1e-07
PRK14807	351	PRK14807, PRK14807, histidinol-phosphate aminotran	4e-07
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	6e-07
PRK08960	387	PRK08960, PRK08960, hypothetical protein; Provisio	1e-06
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	1e-06
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	1e-06
PRK09276	385	PRK09276, PRK09276, LL-diaminopimelate aminotransf	2e-06
PRK07337	388	PRK07337, PRK07337, aminotransferase; Validated	2e-06
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	3e-06
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	3e-06
TIGR03539	357	TIGR03539, DapC_actino, succinyldiaminopimelate tr	3e-06
PRK09148	405	PRK09148, PRK09148, aminotransferase; Validated	1e-05
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	2e-05
PRK05166	371	PRK05166, PRK05166, histidinol-phosphate aminotran	2e-05
PRK07865	364	PRK07865, PRK07865, N-succinyldiaminopimelate amin	9e-05
PRK09275	527	PRK09275, PRK09275, aspartate aminotransferase; Pr	2e-04
PRK07550	386	PRK07550, PRK07550, hypothetical protein; Provisio	2e-04
PRK00950	361	PRK00950, PRK00950, histidinol-phosphate aminotran	3e-04
TIGR03801	521	TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla	3e-04
TIGR01140	330	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha	4e-04
PRK06207	405	PRK06207, PRK06207, aspartate aminotransferase; Pr	5e-04
TIGR04350	384	TIGR04350, C_S_lyase_PatB, putative C-S lyase	6e-04
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	7e-04
PRK04635	354	PRK04635, PRK04635, histidinol-phosphate aminotran	0.001
TIGR03538	393	TIGR03538, DapC_gpp, succinyldiaminopimelate trans	0.002
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	0.003

>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional

 Score =  531 bits (1370), Expect = 0.0
 Identities = 213/506 (42%), Positives = 283/506 (55%), Gaps = 99/506 (19%)

Query: 10  QVLALVSLPQLFDDP----RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
           QVL+LV  P L +DP     FP DV  RA+  L+   G   G+YTDS G   +R+ VA +
Sbjct: 69  QVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAI-GGGTGAYTDSAGYPFVRKAVAAF 127

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
           I RRDG P D  D+ L+ GAS GIK +L+LLI D      GV+IPIPQYPLYSA++    
Sbjct: 128 IERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD---PSDGVMIPIPQYPLYSAAITLLG 184

Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDII 184
            +Q+ YYLDE K W L   ELE +  +A ++   PRA+V+INPGNPTGQVLT++ +++II
Sbjct: 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244

Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGE 243
           KF + + + L ADEVYQ+N+Y     F SF+KVL+E+   Y   +EL SF S SKG +GE
Sbjct: 245 KFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGE 304

Query: 244 CGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL 303
           CG RGGY E+ N+ P V+  ++K  S  LC  V                           
Sbjct: 305 CGRRGGYFELTNIPPEVREQIYKLASINLCSNV--------------------------- 337

Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
                  VGQ +   + NPP+ G+ SY  + RE+ ++  SLK+RA+++ D  N IEG+SC
Sbjct: 338 -------VGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC 390

Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
            PV+GAMYAFP+++LP KAI +AK  G  P VLY  ELLE TGI +VPG+GFGQ PGTYH
Sbjct: 391 QPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYH 450

Query: 424 FRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI 483
           FR                                    I I                   
Sbjct: 451 FR------------------------------------ITI------------------- 455

Query: 484 LPQPEKLKAMLEKFREFHEEFLAKYK 509
           LP  E+++ M++K +EFHE F+ KY 
Sbjct: 456 LPPEEQIEEMVKKIKEFHESFMKKYG 481

Length = 481

>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase

 Score =  378 bits (973), Expect = e-126
 Identities = 189/421 (44%), Positives = 247/421 (58%), Gaps = 42/421 (9%)

Query: 10  QVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
           +VLAL   P L D       F  D  +RA  +LD   G++ G+Y+ S GI+ +R  +A  
Sbjct: 121 EVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAG 180

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
           I  RDG PAD  D+ L+ GAS  +  +++LLI     +K G+L PIPQYPLYSAS+A   
Sbjct: 181 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---EKDGILCPIPQYPLYSASIALHG 237

Query: 126 MEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAIVIINPGNPTGQVLTKENIQDII 184
              + YYLDE+  WGL ISEL++ + +AR K    RA+V+INPGNPTGQVL +EN +DI+
Sbjct: 238 GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIV 297

Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC 244
           +F  +E L L ADEVYQ+NVY    KF+SFKKV   MG   K + L SF S SKGY GEC
Sbjct: 298 EFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGEC 357

Query: 245 GLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLD 304
           G RGGY EV      V+  ++K  S  LC  +                            
Sbjct: 358 GKRGGYMEVTGFTSDVREQIYKVASVNLCSNI---------------------------- 389

Query: 305 GCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
                  GQ +   V++PP+PG+ SYE +  EK  +L SL +RAK + D  NS+EG++CN
Sbjct: 390 ------SGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCN 443

Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
             +GAMY FP++ LP KAI  A+A    P   Y   LL  TGI +VPG+GFGQVPGT+HF
Sbjct: 444 KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHF 503

Query: 425 R 425
           R
Sbjct: 504 R 504

Length = 534

>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase

 Score =  372 bits (956), Expect = e-125
 Identities = 167/384 (43%), Positives = 236/384 (61%), Gaps = 44/384 (11%)

Query: 10  QVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
           QV+AL   P L DDP     FP D   RA+  L    G  +G+Y+DS G+  +R+ VA++
Sbjct: 61  QVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAEF 119

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
           I RRDG P+D + + L+ GAS G+  +L  +I    G+K GVL+P+PQYPLYSA+++   
Sbjct: 120 IERRDGYPSDPELIFLTDGASKGVMQILNAVIR---GEKDGVLVPVPQYPLYSATISLLG 176

Query: 126 MEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAIVIINPGNPTGQVLTKENIQDII 184
              + YYL+ES+ WGL ++ L +S+ +AR K    RA+VIINPGNPTGQ L++ N+++I+
Sbjct: 177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 236

Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGE 243
           KF ++E+L L  DEVYQ N+Y +   F S KKVL++MG P  K ++L SF + SKGY GE
Sbjct: 237 KFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGE 296

Query: 244 CGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL 303
           CG RGGY E+ N+ P     ++K  S  L P V                           
Sbjct: 297 CGQRGGYFEMTNIPPKTVEEIYKVASIALSPNV--------------------------- 329

Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
                   GQ  M  +VNPP+PG+ SY+QF RE + +L+SL++RA+M+ D FNS + + C
Sbjct: 330 -------SGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC 382

Query: 364 NPVQGAMYAFPQMKLPAKAIAKAK 387
           N  +GAMY+FPQ+KLP KAI  A+
Sbjct: 383 NFTEGAMYSFPQIKLPPKAIEAAR 406

Length = 407

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  178 bits (454), Expect = 4e-51
 Identities = 100/410 (24%), Positives = 173/410 (42%), Gaps = 85/410 (20%)

Query: 23  DPRF--PDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QD 78
           +P F  P+ + + A +A+ +G        YT S GI  +R  +A+   RR G   D  ++
Sbjct: 37  EPDFPTPEHIIEAAIEALEEGGTH-----YTPSAGIPELREAIAEKYKRRYGLDVDPEEE 91

Query: 79  VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK- 137
           +I++AGA + +      L+   D     VLIP P YP Y A++     + +   LDE + 
Sbjct: 92  IIVTAGAKEALFLAFLALLNPGDE----VLIPDPGYPSYEAAVKLAGGKPVPVPLDEEEN 147

Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
            +   + +LE +IT        +AI++ +P NPTG V +KE ++ I++ A    + + +D
Sbjct: 148 GFKPDLEDLEAAITP-----KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELA-SFMSCSKGYMGECGLRGGYSEVINL 256
           E+Y++ VY +G++  S         E   + +   +  S SK Y G  G R G+  V   
Sbjct: 203 EIYEELVY-DGAEHPSI-------LELAGARDRTITINSFSKTY-GMTGWRIGWV-VGPP 252

Query: 257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM 316
           +  + A+         C    A  +     + P+  + V++  +                
Sbjct: 253 EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREE--------------- 297

Query: 317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQ 375
                                       ++R  ++ +  N I G+S   P +GA Y FP 
Sbjct: 298 ---------------------------YRERRDLLVEALNEIGGLSVVKPPEGAFYLFP- 329

Query: 376 MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                      K      S  +A +LLE  G+ +VPG+GFG+ PG  + R
Sbjct: 330 -----------KIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVR 368

Length = 393

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  158 bits (401), Expect = 6e-44
 Identities = 77/403 (19%), Positives = 152/403 (37%), Gaps = 78/403 (19%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
           +P FP    +  +A+        +  Y   PG+  +R  +A+++ RR G     ++++++
Sbjct: 7   EPDFPPP-PEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVT 65

Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
            GA + +  +L+ L+   D     VL+P P YP Y A+      E +   LDE   + L 
Sbjct: 66  NGAQEALSLLLRALLNPGDE----VLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLD 121

Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
           +  LE + T        + + + NP NPTG VL++E ++++ + A +  + + +DE Y +
Sbjct: 122 LELLEAAKTP-----KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAE 176

Query: 203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA 262
            VY +G    +    L++  E      +    S SK + G  GLR GY  +   +  ++ 
Sbjct: 177 LVY-DGEPPPALA--LLDAYER-----VIVLRSFSKTF-GLPGLRIGYL-IAPPEELLER 226

Query: 263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP 322
           +          P+ L+  +     DD    + +++  +                      
Sbjct: 227 LKKLLPYTTSGPSTLSQAAAAAALDDGE--EHLEELRER--------------------- 263

Query: 323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKA 382
                                 ++R   + +    +  +      G  + +    LP   
Sbjct: 264 ---------------------YRRRRDALLEALKELGPLVVVKPSGGFFLWL--DLPEGD 300

Query: 383 IAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
             +               LL   G+ + PG+ FG+  G    R
Sbjct: 301 DEEF-----------LERLLLEAGVVVRPGSAFGE-GGEGFVR 331

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score =  134 bits (341), Expect = 7e-35
 Identities = 112/408 (27%), Positives = 169/408 (41%), Gaps = 128/408 (31%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
           Y+DS G+   R+ + QY  ++     D  D+ +  G S+ I   ++ L+ + D     VL
Sbjct: 68  YSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDE----VL 123

Query: 109 IPIPQYPLYSA--SLAEFNMEQIG----YYL-DESKQWGLPISELERSITEARKHCNPRA 161
           +P P YPL++A  SL+       G    +YL DE   W   + ++   IT        +A
Sbjct: 124 VPAPDYPLWTAAVSLS-------GGKPVHYLCDEEAGWFPDLDDIRSKITP-----RTKA 171

Query: 162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEM 221
           IVIINP NPTG V +KE +++I++ A +  L +FADE+Y D +  +G+   S        
Sbjct: 172 IVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIY-DKILYDGAVHIS-------- 222

Query: 222 GEPYKSMELAS---------FMSCSKGYMGECGLRGG-------------YSEVINLDPG 259
                   +AS         F   SK Y    G R G             Y E ++    
Sbjct: 223 --------IASLAPDLLCVTFNGLSKAYRV-AGFRVGWMVLSGPKKHAKGYIEGLD---- 269

Query: 260 VKAMLHKSISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQTVMD 317
              ML    ++M LC  V A                  Q A Q  L G   QS+ + ++ 
Sbjct: 270 ---ML----ASMRLCANVPA------------------QHAIQTALGG--YQSINELIL- 301

Query: 318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK 377
                  PG   YEQ  R+                +  N+I G+SC   +GA+YAFP  K
Sbjct: 302 -------PGGRLYEQ--RD-------------RAWELLNAIPGVSCVKPKGALYAFP--K 337

Query: 378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           L  K +     + +     +  +LL +  + +V G GF   P   HFR
Sbjct: 338 LDPK-VYPIHDDEQ-----FVLDLLLQEKVLLVQGTGF-NWPEPDHFR 378

Length = 404

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score =  118 bits (297), Expect = 4e-29
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 13/192 (6%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
                 D  +  +AV D  R      Y  S G    R  VA+Y+S          DV+L+
Sbjct: 44  FGNLRTDP-EAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLT 102

Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY-LDESKQWGL 141
           +G S  I+    + IE +      +L+P P +PLY    A F+  ++  Y L   K W +
Sbjct: 103 SGCSQAIE----ICIEALANPGANILVPRPGFPLYDT-RAAFSGLEVRLYDLLPEKDWEI 157

Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
            +  LE    E        AIV+INP NP G V +++++Q I + A +  + + ADE+Y 
Sbjct: 158 DLDGLESLADE-----KTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYG 212

Query: 202 DNVYAEGSKFYS 213
             V+   + F  
Sbjct: 213 HMVFG-DAPFIP 223

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score =  110 bits (278), Expect = 2e-26
 Identities = 108/412 (26%), Positives = 172/412 (41%), Gaps = 102/412 (24%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P+ +K+ A   LD   G++   YT + GI  +R  +A  + R +G   D   VI++ GA 
Sbjct: 46  PEHIKEAAIEALD--DGKT--KYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK 101

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
             + +    L++      PG  V+IP P +  Y   +       +     E   + L + 
Sbjct: 102 QALYNAFMALLD------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVE 155

Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
           +LE +IT        +A+++ +P NPTG V + E ++ I   A    +++ +DE+Y+  V
Sbjct: 156 QLEAAITP-----KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLV 210

Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY----SEVINLDPG 259
           Y +G++F S   +  E+ +  +++ +  F   SK Y M   G R GY     E+I     
Sbjct: 211 Y-DGAEFTSIASLSPELRD--RTITVNGF---SKAYAM--TGWRLGYAAGPKELI----- 257

Query: 260 VKAM--LH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ-AVLDGCRGQSVGQTV 315
            KAM  L   S S    PT +A                  Q A  A L+G +        
Sbjct: 258 -KAMSKLQSHSTS---NPTSIA------------------QYAAVAALNGPQ-------- 287

Query: 316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ 375
            D V       E   + F           ++R  ++ D  N I G+ C   +GA Y FP 
Sbjct: 288 -DEV-------EEMRQAF-----------EERRDLMVDGLNEIPGLECPKPEGAFYVFPN 328

Query: 376 MKLPAKAIAKAKAEGKCPSVLYAF--ELLERTGICIVPGAGFGQVPGTYHFR 425
           +          K  GK  +    F   LLE  G+ +VPG  FG  PG  + R
Sbjct: 329 VS---------KLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA-PG--YVR 368

Length = 393

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score =  108 bits (272), Expect = 1e-25
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 35  QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
           QA+ D         Y  + G    R  +A Y    DG P +  DV+L +G S  I+    
Sbjct: 55  QAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIE---- 109

Query: 95  LLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR 154
           + I  +      +L+P P +PLY        +E   Y L   K W + + +LE  I E  
Sbjct: 110 MCIAALANAGQNILVPRPGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE-- 167

Query: 155 KHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS 213
                 A+V+ NP NP G V +++++++I+  A R+ L + ADE+Y D V+  G+ F  
Sbjct: 168 ---KTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEP 222

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  105 bits (264), Expect = 7e-25
 Identities = 88/401 (21%), Positives = 144/401 (35%), Gaps = 77/401 (19%)

Query: 20  LFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD- 78
           L D    P  V +  +  L G    +   Y  + G+  +R  +A+++ R      D +  
Sbjct: 12  LGDSGTLPA-VAKAEKDALAG---GTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAA 67

Query: 79  VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
           V+  +GA   I++++ LL  +       +L+P P YP Y         E + Y L  S  
Sbjct: 68  VVFGSGAGANIEALIFLLRLN---PGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSND 124

Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           + L    LE ++ EA +    + ++  +P NPTG V T E ++ ++  A    + L  DE
Sbjct: 125 FHLDFDALEAALKEATE--GNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDE 182

Query: 199 VYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP 258
            Y   V+  GS      + L+  G       L    S SK   G  G R GY   I  + 
Sbjct: 183 AYAGFVF--GSLDAVATRALLAEG-----PNLLVVGSFSKA-FGLAGWRVGY---ILGNA 231

Query: 259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC 318
            V + L K        T L   +   L D      ++++  Q                  
Sbjct: 232 AVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQR----------------- 274

Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
                                    +K+R   + D   +  G+S  P Q   +    +  
Sbjct: 275 -------------------------IKERRDYLRDGLEAA-GLSVLPSQAGFFLLTGLD- 307

Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP 419
           P  A+A A+             LLE  G+ + PG+ FG   
Sbjct: 308 PEAALALAQV------------LLEEVGVYVTPGSSFGGPG 336

Length = 357

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score =  103 bits (258), Expect = 5e-24
 Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 85/404 (21%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGS--YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
           P+ +K+        CR    G   Y  S G+  +R  + +   R++G      DV ++A 
Sbjct: 48  PEHMKEAY------CRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAA 101

Query: 85  ASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
            ++ ++ +   L++  D     +LIP P YP Y+  +  +    + Y   E + W   I 
Sbjct: 102 VTEALQLIFGALLDPGDE----ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDID 157

Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
           ++ + ITE  K     AI +INP NPTG +  K+ +++I+  A    L + +DE+Y    
Sbjct: 158 DIRKKITEKTK-----AIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMT 212

Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP---GVK 261
           Y EG K  S   +  ++  P   M        SK Y    G R GY   ++ +     V+
Sbjct: 213 Y-EG-KHVSPGSLTKDV--PVIVMN-----GLSKVYFAT-GWRLGYIYFVDPEGKLAEVR 262

Query: 262 AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN 321
             + K     LCP      + P  F              A + G  G       MD +  
Sbjct: 263 EAIDKLARIRLCP------NTPAQF--------------AAIAGLTGP------MDYL-- 294

Query: 322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAK 381
                    E++ ++       LK+R   +    N I G+S    QGA Y FP+++    
Sbjct: 295 ---------EEYMKK-------LKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIE---- 334

Query: 382 AIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                K + +     +  ++L    +  V G+GFG+  G  HFR
Sbjct: 335 -EGPWKDDKE-----FVLDVLHEAHVLFVHGSGFGEY-GAGHFR 371

Length = 398

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score = 97.7 bits (244), Expect = 7e-22
 Identities = 98/400 (24%), Positives = 152/400 (38%), Gaps = 104/400 (26%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
           Y  + G+   R  +A+  ++R G      D+I   G  D I  +  LL  +       V+
Sbjct: 69  YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREAR-----VI 123

Query: 109 IPIPQYPLYS-ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR--AIVII 165
            P P Y  +S A  A      + Y LD    W   + +LE  +    K+ NP    I++I
Sbjct: 124 GPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKV----KY-NPSIAGILLI 178

Query: 166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY 225
           NP NPTG V  KE +++I+  A    LF+  DE+Y + VY  G K     +V+ ++  P 
Sbjct: 179 NPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVY-NGKKTVPLSEVIGDV--PG 235

Query: 226 KSMELASFMSCSKGYMGEC---GLRGGYSEVINL--DPGVKAMLHKSISAML-------C 273
            ++         KG   E    G R G+ EV N   D     +  K I+++L       C
Sbjct: 236 IAL---------KGISKELPWPGSRCGWIEVYNADKDE----VFKKYINSILNAKMIEVC 282

Query: 274 PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF 333
            T L  +++P++   P + + +K+R +                             YE+ 
Sbjct: 283 STTLPQMAIPRIMSHPEYKNYLKERNK----------------------------RYEKR 314

Query: 334 SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMY---AF------PQMKLP-AKAI 383
           S               +  +    + G+  N   GA Y    F       +  LP     
Sbjct: 315 S--------------NIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPE 360

Query: 384 AKAKAEGKCPS--------VLYAFELLERTGICIVPGAGF 415
            K   EG            V Y   LL  TGIC+VP + F
Sbjct: 361 VKEYVEGLVKGPVSPDKRFVYY---LLASTGICVVPLSSF 397

Length = 433

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score = 95.2 bits (237), Expect = 7e-21
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 25  RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
           R PD+V       L    G     Y+DS G+   R+ + QY   +     D  D+    G
Sbjct: 162 RTPDEVVYDMAQQLTDTEG-----YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNG 216

Query: 85  ASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
            S+ I   +  L++D D     VLIP P YPL++A +       + Y  DE  +W   I 
Sbjct: 217 VSELINLSMSALLDDGDE----VLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDID 272

Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
           ++   IT        +AIVIINP NPTG +  +E +Q I+  A   +L +F+DE+Y   V
Sbjct: 273 DIRSKITS-----RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLV 327

Query: 205 Y 205
            
Sbjct: 328 M 328

Length = 517

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score = 93.4 bits (233), Expect = 1e-20
 Identities = 96/384 (25%), Positives = 154/384 (40%), Gaps = 93/384 (24%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-- 106
           Y+ S GI  +R   A+Y  ++ G   +  +++++ G S+ I   + + I D     PG  
Sbjct: 62  YSHSQGIPELREAFAKYY-KKWGIDVEPDEILITNGGSEAILFAM-MAICD-----PGDE 114

Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP-ISELERSITEARKHCNPRAIVII 165
           +L+P P Y  Y+       ++ +       + + LP   E+E+ IT        +AI+I 
Sbjct: 115 ILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-----KTKAILIS 169

Query: 166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF--------KKV 217
           NPGNPTG V TKE ++ + + A +  LFL +DEVY++ VY +G K+ S         + +
Sbjct: 170 NPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVY-DGLKYTSALSLEGLEDRVI 228

Query: 218 LVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVL 277
           +++              S SK Y   CG R G   +I+ +  + A   K   A L P  L
Sbjct: 229 IID--------------SVSKRY-SACGARIGC--LISKNKELIAAAMKLCQARLSPPTL 271

Query: 278 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK 337
             +    L D P                                         E +  E 
Sbjct: 272 EQIGAAALLDTP-----------------------------------------ESYFDE- 289

Query: 338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY 397
             V +  K+R  ++ +  N I G+ C   +GA Y     KLP        AE     +L 
Sbjct: 290 --VREEYKKRRDILYEELNKIPGVVCEKPKGAFYII--AKLPVD-----DAEDFAKWLLT 340

Query: 398 AFELLERTGICIVPGAGFGQVPGT 421
            F     T + + P +GF   PG 
Sbjct: 341 DFNYNGET-VMVAPASGFYATPGL 363

Length = 397

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score = 85.2 bits (211), Expect = 9e-18
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 35  QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD------WQDVILSAGASDG 88
           +A+++    Q    Y  + G    R  VA Y                  +V+L +G S  
Sbjct: 57  KALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHA 116

Query: 89  IKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER 148
           I   L  L ++ D     +L+P P +P Y      + +E   Y     K W   + E+ R
Sbjct: 117 ILMALTALCDEGDN----ILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEI-R 171

Query: 149 SITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG 208
            + + R     +A+++ NP NP G   ++++++DII+     +L L +DE+Y   V+  G
Sbjct: 172 RLVDDRT----KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVF-NG 226

Query: 209 SKFYS 213
           + F S
Sbjct: 227 ATFTS 231

Length = 412

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score = 83.3 bits (206), Expect = 4e-17
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 13/174 (7%)

Query: 36  AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL 95
           AV    R     SY+   G+   RR +A+Y+SR         D+ L+AG +  I+ ++ +
Sbjct: 77  AVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSV 136

Query: 96  LIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA 153
           L       +PG  +L+P P YPLY A      +E   + L   + W     E++    EA
Sbjct: 137 L------AQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGW-----EVDLEGVEA 185

Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE 207
               N  A+VIINP NP G V + E++  I + A +  + + ADEVY    +  
Sbjct: 186 LADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS 239

Length = 430

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 91/382 (23%), Positives = 160/382 (41%), Gaps = 91/382 (23%)

Query: 44  QSVGSYTDSPGIEIIRRHVAQYISRR---DGQPADWQDVILSAGASDGIKSVLKLLIEDV 100
           Q   SYT + G+  +R+ +A+Y+ +R      P D  ++I++ GAS  +   ++ +I   
Sbjct: 48  QGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPND--EIIVTVGASQALDVAMRAIIN-- 103

Query: 101 DGKKPG--VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH 156
               PG  VLI  P +  Y+   +LA      +   L+   ++ +  +++E +IT   K 
Sbjct: 104 ----PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLE--NEFKVQPAQIEAAITAKTK- 156

Query: 157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK 216
               AI++ +P NPTG VL K  +++I     +  L + +DE+Y +  Y E   + SF  
Sbjct: 157 ----AILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE--AYTSFAS 210

Query: 217 VLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-PT 275
           +   M E  +++ ++ F   SKG+    G R G+  +       +AML     +M+C PT
Sbjct: 211 I-KGMRE--RTILISGF---SKGF-AMTGWRLGF--IAAPVYFSEAMLKIHQYSMMCAPT 261

Query: 276 VLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR 335
           +    +L  L                                      + G     +   
Sbjct: 262 MAQFAALEAL--------------------------------------RAGNDDVIRMR- 282

Query: 336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSV 395
                 DS ++R      +FN I G++C+   GA YAFP +                 S 
Sbjct: 283 ------DSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSIS-----------STGLSSE 324

Query: 396 LYAFELLERTGICIVPGAGFGQ 417
            +A +LL    + +VPG+ FG+
Sbjct: 325 EFAEQLLLEEKVAVVPGSVFGE 346

Length = 378

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score = 81.3 bits (200), Expect = 2e-16
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 14/192 (7%)

Query: 36  AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL 95
           AV+D  R     SY    GI   RR VA Y++R        +D+ L+AG + GI+    +
Sbjct: 91  AVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIE----I 146

Query: 96  LIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK 155
           + E +      +L+P P +P Y A  A   +E   + L   K+W + +  +E    E   
Sbjct: 147 VFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE--- 203

Query: 156 HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ-----DNVYAEGSK 210
             N  A+V+INP NP G V + ++++ + + A +  + + +DEVY      DN +    K
Sbjct: 204 --NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK 261

Query: 211 FYSFKKVLVEMG 222
           F S   VL   G
Sbjct: 262 FASIVPVLTLAG 273

Length = 462

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score = 78.9 bits (194), Expect = 8e-16
 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 31/261 (11%)

Query: 36  AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL 95
           A+++  R     SY  + GI   RR +A Y+S          DV L+ G     + ++K+
Sbjct: 57  AIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKV 116

Query: 96  LIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA 153
           L       +P   +L+P P +P         ++E   + L   K W     E++    EA
Sbjct: 117 L------ARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGW-----EVDLDAVEA 165

Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS 213
               N  A+VIINPGNP G V + E++  I + A +  + + ADEVY   V+  GSK + 
Sbjct: 166 IADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF--GSKPF- 222

Query: 214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-------GVKAMLHK 266
                V MG     + + +  S SK +M   G   G+  ++  DP        +   + K
Sbjct: 223 -----VPMGLFASIVPVITLGSISKRWMIP-GWGLGW--LVTCDPSGLLQICEIADSIKK 274

Query: 267 SISAMLCPTVLALVSLPQLFD 287
           +++    P      ++P++ +
Sbjct: 275 ALNPAPFPPTFIQAAIPEILE 295

Length = 409

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 13/168 (7%)

Query: 35  QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
           +AV+D  +      Y  + G+   RR +A+Y+SR         DV +++G +  I   L 
Sbjct: 55  EAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALS 114

Query: 95  LLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITE 152
           +L       +PG  +L+P P +P+Y    A  ++E     L   K W     E++    E
Sbjct: 115 ML------ARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGW-----EVDLDAVE 163

Query: 153 ARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
           A    N  A+VIINPGNP G V + ++++ I + A + K+ + ADEVY
Sbjct: 164 ALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVY 211

Length = 409

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 20/198 (10%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F  P ++K+ A+  LD    +    YT + GI  +R  +A+Y  +  G   D  +VI
Sbjct: 42  EPDFDTPKNIKEAAKRALD----EGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVI 97

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQ 138
           ++AGA +      + L+E+ D     V+IP P +  Y   A +AE    +I   L E  +
Sbjct: 98  VTAGAYEATYLAFESLLEEGDE----VIIPDPAFVCYVEDAKIAEAKPIRIP--LREENE 151

Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           +     EL   IT+       R IVI  P NPTG  L KE  + I   A    +++ +DE
Sbjct: 152 FQPDPDELLELITK-----RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDE 206

Query: 199 VYQDNVYAEGSKFYSFKK 216
            Y+  +Y EG+K Y   K
Sbjct: 207 PYEHFLY-EGAKHYPMIK 223

Length = 391

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 92/399 (23%), Positives = 156/399 (39%), Gaps = 85/399 (21%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
           DP    D      A  D  +G +   YTDS G   +   + +Y S+         +++ +
Sbjct: 38  DPDLITDESIINAAFEDAKKGHT--RYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMAT 95

Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
            GA  G+   L+ +++  D     V+I  P +  Y   +     + I     E   + + 
Sbjct: 96  VGACHGMYLALQSILDPGDE----VIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQIN 151

Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
           + +LE  IT   K     AI++ +P NPTG V +KE +++I K A    LF+ +DEVY  
Sbjct: 152 VKKLEALITSKTK-----AIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDG 206

Query: 203 NVYAEGSKFYSFKKVLVEM----GEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP 258
                    +SF +  V M    G P +++   SF   SK +    G R GY  VI  D 
Sbjct: 207 ---------FSFYEDFVPMATLAGMPERTITFGSF---SKDF-AMTGWRIGY--VIAPDY 251

Query: 259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC 318
            ++    K I+  +C            F  P     + QRA              T++  
Sbjct: 252 IIETA--KIINEGIC------------FSAP----TISQRA-----AIYALKHRDTIVPL 288

Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
           +                      +  ++R +       SI  +S +P +G++YAF  +K 
Sbjct: 289 IK---------------------EEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKK 327

Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ 417
              +           SV +  +LL+   + ++PG  FG+
Sbjct: 328 TGLS-----------SVEFCEKLLKEAHVLVIPGKAFGE 355

Length = 384

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 72.1 bits (178), Expect = 1e-13
 Identities = 42/198 (21%), Positives = 88/198 (44%), Gaps = 43/198 (21%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P  VK+  + + +      +  Y  + G   +R  +A+ ++RR G P     ++++ GA+
Sbjct: 48  PAAVKEALRELAEE-EDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAA 106

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLD---------- 134
             +   LK ++       PG  V++  P +  Y             +Y+D          
Sbjct: 107 GALNVALKAILN------PGDEVIVFAPYFVEY------------RFYVDNHGGKLVVVP 148

Query: 135 -ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ---DIIKFAHRE 190
            ++  +   +  LE +IT        +A++I +P NPTG V ++E ++    +++   +E
Sbjct: 149 TDTDTFQPDLDALEAAITP-----KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKE 203

Query: 191 ---KLFLFADEVYQDNVY 205
               ++L +DE Y++ VY
Sbjct: 204 YGRPIYLISDEPYREIVY 221

Length = 394

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           PD ++  A A L    G++   YT + GI  +R  +A+Y+SR  G     + + +++   
Sbjct: 39  PDFIRDAAAAALA--DGETF--YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGV 94

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPI 143
             +    + L+       PG  V+   P +P   A+        +   LD     W L +
Sbjct: 95  QALMLAAQALVG------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDL 148

Query: 144 SELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN 203
             L  +IT        RA+ I +P NPTG   ++++++ I+    R  L++ ADEVY+  
Sbjct: 149 DRLLAAITPR-----TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERL 203

Query: 204 VYAEGSKFYSF 214
            YA G +  SF
Sbjct: 204 YYAPGGRAPSF 214

Length = 382

>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 19/186 (10%)

Query: 24  PRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVI 80
           P F  P  VK+ A+  +     ++  SYT + G+  +R+    ++  +       + ++I
Sbjct: 38  PDFPTPSHVKEAAKRAIT----ENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEII 93

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ-W 139
           ++ GAS+ I    + ++E        V++P P YP Y   +     + +  ++D     +
Sbjct: 94  VTIGASEAIDIAFRTILEPGTE----VILPAPIYPGYEPIIRLCGAKPV--FIDTRSTGF 147

Query: 140 GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
            L    LE +ITE       R +V+  P NPTG  L+KE +QDI      + +F+ +DE+
Sbjct: 148 RLTAEALENAITE-----KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEI 202

Query: 200 YQDNVY 205
           Y + VY
Sbjct: 203 YSELVY 208

Length = 387

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 20  LFDDPRFP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD 78
           L D   FP + +++    VL          Y  + G+  +R  +A Y+  R G   + + 
Sbjct: 98  LPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQ 157

Query: 79  VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
           +++++GA   +  +L+LL++  D     VL+  P YP    +L       I   +DE   
Sbjct: 158 IVITSGAQQALDLLLRLLLDPGD----TVLVEDPTYPGALQALEALGARVIPVPVDED-- 211

Query: 139 WGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
            G+    LE ++ + +    P+A+ +     NPTG  ++ E  + ++  A +  + +  D
Sbjct: 212 -GIDPEALEEALAQWK----PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIED 266

Query: 198 EVYQD 202
           + Y +
Sbjct: 267 DYYGE 271

Length = 459

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)

Query: 15  VSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP 73
           V+L Q F D   P ++ + A +A+  G     V  Y   PGI  +R  +A    RR G  
Sbjct: 27  VNLGQGFPDEDGPPEMLEAAQEAIAGG-----VNQYPPGPGIPELRAAIAAQRRRRYGLE 81

Query: 74  ADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIG 130
            D   +V+++ GA++ I + +  L+E      PG  VL+  P Y  Y+A +A     ++ 
Sbjct: 82  YDPDTEVLVTVGATEAIAAAVLGLVE------PGDEVLLIEPYYDSYAAVIAMAGAHRVP 135

Query: 131 YYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
             L    + + L +  L  ++T        RA+++ +P NPTG VLT   +  I + A  
Sbjct: 136 VPLVPDGRGFALDLDALRAAVTP-----RTRALIVNSPHNPTGTVLTAAELAAIAELAVE 190

Query: 190 EKLFLFADEVYQDNVY 205
             L +  DEVY+  V+
Sbjct: 191 HDLLVITDEVYEHLVF 206

Length = 387

>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase

 Score = 67.0 bits (163), Expect = 7e-12
 Identities = 64/277 (23%), Positives = 126/277 (45%), Gaps = 20/277 (7%)

Query: 28  DDVKQRAQAVLDGCRG----QSVGSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVIL 81
           D VK+  +A +    G      + ++ D  G++  R+ +A ++ +  G     D + V++
Sbjct: 65  DWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVM 124

Query: 82  SAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQ 138
           S GA+   ++++  L +      PG   LIP P Y  +   L     +E I      S  
Sbjct: 125 SGGATGANETIMFCLAD------PGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDN 178

Query: 139 WGLPISELERSITEARKHCNP-RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
           + L +   + +  +A++     + +++ NP NP G +L K+ + ++++F  R+ + L  D
Sbjct: 179 FKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVD 238

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD 257
           E+Y   V+A G  F S  +V+ ++     +++L   +      MG  G R G   V + +
Sbjct: 239 EIYAATVFA-GGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGI--VYSFN 295

Query: 258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDD 294
             V +   K  S  L  +   L+ L  +  D +F D+
Sbjct: 296 DSVVSCARKMSSFGLVSSQTQLM-LASMLSDDQFVDN 331

Length = 496

>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G++  R+ +A ++ +  G  A  D   ++L+AGA+     +L  ++ D     PG
Sbjct: 91  FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGAT-AANELLTFILAD-----PG 144

Query: 107 --VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAI 162
             +L+P P YP +   L     ++ +  + D S  + +    LE +  EA   +   R +
Sbjct: 145 DALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGV 204

Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG 222
           +I NP NP G  + +  ++DI+ F  R+ + L +DE+Y  +V++  S+F S  +++   G
Sbjct: 205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFS-ASEFVSVAEIVEARG 263

Query: 223 EPYKSMELASFMSCSKGYMGECGLRGG--YS 251
               +  +    S SK  +G  G R G  YS
Sbjct: 264 YKGVAERVHIVYSLSKD-LGLPGFRVGTIYS 293

Length = 447

>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 21/173 (12%)

Query: 78  DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
           +VIL  GA++    ++  +++    KK  VLI  P +  Y  +L  F+ E     L E  
Sbjct: 73  NVILGNGATE----LIFNIVKVTKPKK--VLILAPTFAEYERALKAFDAEIEYAELTEET 126

Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
            +      LE  I E         + + NP NPTGQ+++KE ++ I+    +  ++L  D
Sbjct: 127 NFAANEIVLE-EIKE-----EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIID 180

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
           E + D  + E ++  S    L    E +K   L    + +K +    GLR GY
Sbjct: 181 EAFMD--FLEENETISMINYL----ENFK--NLIIIRAFTK-FFAIPGLRLGY 224

Length = 354

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 28/173 (16%)

Query: 79  VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
           V++  G+ + I+ +++  +E  D     VLIP P + +Y  +      E +   L E   
Sbjct: 78  VLVGNGSDELIELLVRAFVEPGDT----VLIPEPTFSMYEIAAQLAGAEVVKVPLKE--- 130

Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           + L +  +  +I +       + + + NP NPTG +L +E ++ +++ A  E   +  DE
Sbjct: 131 FRLDLDAILAAIRD-----KTKLVFLCNPNNPTGTLLPREELRALLE-ALPEGGLVVIDE 184

Query: 199 VYQDNVYAEGSKF-YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
            Y +       +       ++V          L +F   SK + G  GLR GY
Sbjct: 185 AYIEFSPESSLELLKYPPNLIV----------LRTF---SKAF-GLAGLRVGY 223

Length = 356

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR---DGQPADWQ 77
           +P F  PD VK+ A+  +D    QS   YT   G+  +R+  A ++  +   D  P +  
Sbjct: 39  EPDFTTPDHVKEAAKRAIDA--NQS--HYTGMAGLLELRQAAADFVKEKYNLDYAPEN-- 92

Query: 78  DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
           +++++ GA++ + + L  ++E  D     VL+P P YP Y   +     E +   +D ++
Sbjct: 93  EILVTIGATEALSASLTAILEPGDK----VLLPAPAYPGYEPIVNLVGAEIV--EIDTTE 146

Query: 138 Q-WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
             + L    LE++I E       +A+++  P NPTG   ++E I+ +     +  +F+ +
Sbjct: 147 NDFVLTPEMLEKAILEQGD--KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVIS 204

Query: 197 DEVYQDNVYAE 207
           DEVY +  Y  
Sbjct: 205 DEVYSELTYTG 215

Length = 391

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 78  DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
            ++L  G+ + I+ +++  +E  D     VL+P P Y +Y  S      E +   LDE  
Sbjct: 73  QILLGNGSDEIIELLIRAFLEPGDA----VLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128

Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
           Q           I  A     P+ + + +P NPTG +L++ +I+ +++    E   +  D
Sbjct: 129 Q------LDLEDILVAIDD-KPKLVFLCSPNNPTGNLLSRSDIEAVLERT-PEDALVVVD 180

Query: 198 EVY 200
           E Y
Sbjct: 181 EAY 183

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 39/244 (15%)

Query: 19  QLFD----DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           +LFD    DP+ P     R +A++D      V  Y  + G + +R  ++ +  RR G   
Sbjct: 1   RLFDFGTGDPKEPTPPFIR-KALIDAV--PEVSQYPSALGTKALREAISGWFERRFGVKL 57

Query: 75  DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL 133
           D    V+ SAG+ + I     L+  D +  +  V+   P YP+Y         E     L
Sbjct: 58  DPDAQVLPSAGSKEAIFH-FPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKL 116

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKL 192
            +   + L + ++E+SI E  K      IV IN P NPTG    +  +++ I       +
Sbjct: 117 KKEDGFLLRLEKVEKSILEETK------IVWINYPHNPTGATAPRSYLKETIAMCREHGI 170

Query: 193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM------ELASFMSCSKGYMGECGL 246
            L +DE Y +         Y         GEP  S        + +F S SK   G  G 
Sbjct: 171 ILCSDECYTE--------IYF--------GEPPHSALEVGIENVLAFHSLSK-RSGMTGY 213

Query: 247 RGGY 250
           R G+
Sbjct: 214 RSGF 217

The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 16/190 (8%)

Query: 62  VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL 121
           +A +  +R       + ++   G   GI   ++ L +  DG    V+I  P YP +  ++
Sbjct: 69  IAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDG----VVIQTPVYPPFYNAI 124

Query: 122 AEFNMEQIGYYL-DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
                + I   L ++  ++ +    LE++  + R     +  ++ NP NPTG+V TKE +
Sbjct: 125 KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER----VKLFILCNPHNPTGRVWTKEEL 180

Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
           + I +   R  + + +DE++ D V   G K   F  +     E +    +    S SK +
Sbjct: 181 RKIAELCLRHGVRVISDEIHADLVL-GGHKHIPFASL----SERFADNSIT-LTSASKTF 234

Query: 241 MGECGLRGGY 250
               GL+  Y
Sbjct: 235 -NLAGLKCAY 243

Length = 388

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 33/201 (16%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQ-AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP 73
           ++L Q F D   P+DV++ A  A+LDG   Q    Y    G+  +R+ VA + +R  G  
Sbjct: 29  INLGQGFPDDPGPEDVRRAAADALLDG-SNQ----YPPMMGLPELRQAVAAHYARFQGLD 83

Query: 74  ADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLAEFNMEQI 129
            D + +V++++GA++ + + L  L+E      PG   VL      PLY A L    + + 
Sbjct: 84  LDPETEVMVTSGATEALAAALLALVE------PGDEVVLFQ----PLYDAYLPL--IRRA 131

Query: 130 G-----YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDII 184
           G       L E   W LP + L  + +        +A+++ NP NP G+V  +E +  + 
Sbjct: 132 GGVPRLVRL-EPPHWRLPRAALAAAFSP-----RTKAVLLNNPLNPAGKVFPREELALLA 185

Query: 185 KFAHREKLFLFADEVYQDNVY 205
           +F  R       DEV++  V+
Sbjct: 186 EFCQRHDAVAICDEVWEHVVF 206

Length = 387

>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 28/231 (12%)

Query: 54  GIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIP 110
           GI+     V +Y +       +   +V+L  G+ DG+   L ++  +     PG  +L+P
Sbjct: 70  GIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVH-LPMVYAN-----PGDIILVP 123

Query: 111 IPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN-PGN 169
            P Y  Y   +           L +   +   +  +   I +  K      ++I+N PGN
Sbjct: 124 DPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAK------MMILNFPGN 177

Query: 170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF------KKVLVEMGE 223
           P   +  ++  +++I FA +  + +  D  Y +  Y +G+K  SF      K+V VE+  
Sbjct: 178 PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAE-FYFDGNKPISFLSVPGAKEVGVEINS 236

Query: 224 PYKSMELASFMSCSKGYM-GECGLRGGYSEV-INLDPGVKAMLHKSISAML 272
             KS  LA       GYM G   +    ++   N D GV   + K+  A L
Sbjct: 237 LSKSYSLA---GSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAAL 284

Length = 399

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 24/184 (13%)

Query: 21  FDDPRFPDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-D 78
           FD P F   VK+ A QA+ DG + Q    Y    G+  +   +A+   +  G   D + +
Sbjct: 66  FDGPDF---VKEAAIQAIRDG-KNQ----YARGFGVPELNSAIAERFKKDTGLVVDPEKE 117

Query: 79  VILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDES 136
           V +++G ++ I + +  LI       PG  V++  P Y  Y A+L+    +     L   
Sbjct: 118 VTVTSGCTEAIAATILGLIN------PGDEVILFAPFYDSYEATLSMAGAKIKTVTL-RP 170

Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
             + +P  EL+ + T        RAI+I  P NPTG++ T+E ++ I        +  F 
Sbjct: 171 PDFAVPEDELKAAFTS-----KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFT 225

Query: 197 DEVY 200
           DEVY
Sbjct: 226 DEVY 229

Length = 413

>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 43  GQSV----GSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLL 96
           GQS+      + D  G+   +  +A+++S   G     D   ++L+AGA+   ++++  L
Sbjct: 72  GQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL 131

Query: 97  IEDVDGKKPGVLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARK 155
            E  D      L+P P YP +   L     +E +  +   S  + +  S LE +  +A+K
Sbjct: 132 AEPGDA----FLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQK 187

Query: 156 H-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF 214
                + ++I NP NP G   T+  +  ++ F   + + L +DE+Y   V+     F S 
Sbjct: 188 LNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS-PGFVSV 246

Query: 215 KKVL 218
            +VL
Sbjct: 247 MEVL 250

Length = 468

>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 26  FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGA 85
            P++V +  Q ++   +   V  Y D P  E +R  +A+Y S            I     
Sbjct: 36  LPEEVIKNIQEIV---KSSQVNIYPD-PTAEKLREELARYCSVV-------PTNIFVGNG 84

Query: 86  SDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISE 145
           SD I  ++ L   +   K   V+ P P + +YS         +I   L E   +     +
Sbjct: 85  SDEIIHLIMLAFIN---KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTY-----D 136

Query: 146 LERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
           +   I +  +   P+ + + NP NPTG V+ +E   DIIK   + +  +  DE Y     
Sbjct: 137 VGSFI-KVIEKYQPKLVFLCNPNNPTGSVIERE---DIIKIIEKSRGIVVVDEAY----- 187

Query: 206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS 251
                F  +   +V++   ++++ +    + SK + G  GLR GY+
Sbjct: 188 -----FEFYGNTIVDVINEFENLIV--LRTLSKAF-GLAGLRVGYA 225

Length = 351

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 87/398 (21%), Positives = 145/398 (36%), Gaps = 133/398 (33%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS-AGASDGIKSVLKLLIEDVDGKKPGV 107
           Y    G+   R+ VA +  RR G   D +  +LS  G+ +GI  +    +   D     V
Sbjct: 63  YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDI----V 118

Query: 108 LIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER------SITE--ARKHCNP 159
           L+P P YP+Y           IG      + + +P+ E         +I E  A+K    
Sbjct: 119 LVPDPGYPVYR----------IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK---A 165

Query: 160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF----- 214
           + + I  P NPTG V   +  +++++FA    + +  D  Y + +  +G K  SF     
Sbjct: 166 KLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSE-ITFDGYKAPSFLEVDG 224

Query: 215 -KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYS----EVI--------NLDPGV 260
            K V +E            F S SK Y M   G R G +    ++I        N+D GV
Sbjct: 225 AKDVGIE------------FHSLSKTYNM--TGWRIGMAVGNADLIAGLGKVKTNVDSGV 270

Query: 261 -KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV 319
            +A+ + +I+A+                    P DV +  + +                 
Sbjct: 271 FQAIQYAAIAAL------------------NGPQDVVKEIRKI----------------- 295

Query: 320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLP 379
                                    ++R  ++ +    I G+     +   Y +  + +P
Sbjct: 296 ------------------------YQRRRDLLLEALKKI-GIDVEKPKATFYVW--VPVP 328

Query: 380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ 417
                    EG   S  +A  LLE TG+ + PG GFG+
Sbjct: 329 ---------EGY-TSAEFAARLLEETGVVVTPGVGFGE 356

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 23/189 (12%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F   + +    QA L     +    YT + G+  +R  +A + ++R G   D + ++
Sbjct: 41  EPDFTTAEPIVAAGQAALAAGHTR----YTAARGLPALREAIAGFYAQRYGVDVDPERIL 96

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
           ++ G S  +     LL++      PG   L+  P YP     L           +    +
Sbjct: 97  VTPGGSGALLLASSLLVD------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSR 150

Query: 139 WGLPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
           + L  + +ER       H N      ++ +P NPTG +L+++ +  + +        L  
Sbjct: 151 YQLTPALVER-------HWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVV 203

Query: 197 DEVYQDNVY 205
           DE+Y    Y
Sbjct: 204 DEIYHGLTY 212

Length = 387

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 94/382 (24%), Positives = 151/382 (39%), Gaps = 98/382 (25%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG- 106
           Y+ S GI  +RR ++++   R     D + + I++ G+ +G+   L L   D      G 
Sbjct: 63  YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAH-LMLATLD-----HGD 116

Query: 107 -VLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV 163
            VL+P P YP+  Y A +A   +  +   L E   +    +ELER+I E+     P+ ++
Sbjct: 117 TVLVPNPSYPIHIYGAVIAGAQVRSVP--LVEGVDF---FNELERAIRESYP--KPKMMI 169

Query: 164 IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF------KKV 217
           +  P NPT Q +  E  + ++  A R  + +  D  Y D VY +G K  S       K V
Sbjct: 170 LGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY-DGWKAPSIMQVPGAKDV 228

Query: 218 LVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTV 276
            VE            F + SK Y M   G R G+  V N +                  V
Sbjct: 229 AVE------------FFTLSKSYNMA--GWRIGFM-VGNPE-----------------LV 256

Query: 277 LALVSLPQLFDDPRF-PDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR 335
            AL  +    D   F P  V   A A L+G +          CV                
Sbjct: 257 SALARIKSYHDYGTFTPLQVA--AIAALEGDQ---------QCV---------------- 289

Query: 336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSV 395
             + + +  K+R  ++    +    M   P + +MY + ++  P  A+          S+
Sbjct: 290 --RDIAEQYKRRRDVLVKGLHEAGWMVEMP-KASMYVWAKIPEPYAAMG---------SL 337

Query: 396 LYAFELLERTGICIVPGAGFGQ 417
            +A +LL    +C+ PG GFG 
Sbjct: 338 EFAKKLLNEAKVCVSPGIGFGD 359

Length = 395

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 133 LDESKQWGLP-ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK 191
           L E   W LP + EL R +       N + I I N  NPTG ++ +  +++I++ A    
Sbjct: 133 LKEENGW-LPDLDELRRLVRP-----NTKLICINNANNPTGALMDRAYLEEIVEIARSVD 186

Query: 192 LFLFADEVY 200
            ++ +DEVY
Sbjct: 187 AYVLSDEVY 195

Length = 373

>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 90/411 (21%), Positives = 147/411 (35%), Gaps = 144/411 (35%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDG---QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP 105
           Y    G+   R+ VA +  RR G    P    +VI   G+ +GI  +    +       P
Sbjct: 65  YPSYEGMLEFRKAVADWYKRRFGVELDPET--EVISLIGSKEGIAHIPLAFVN------P 116

Query: 106 G--VLIPIPQYPLY--SASLAE---FNM---EQIGYYLDESKQWGLPISELERSITE--A 153
           G  VL+P P YP+Y      A    + M   E+ G+         LP  +   +I E  A
Sbjct: 117 GDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGF---------LPDLD---AIPEDVA 164

Query: 154 RKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFY 212
           +K      ++ IN P NPTG V   E  ++++ FA +  + +  D  Y + +  +G K  
Sbjct: 165 KK----AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSE-IAYDGYKPP 219

Query: 213 SF------KKVLVEMGEPYKSMELASFMSCSKGY-MG--ECGLRGGYSEVI--------N 255
           SF      K V +E            F S SK Y M     G   G +++I        N
Sbjct: 220 SFLEVPGAKDVGIE------------FHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSN 267

Query: 256 LDPGV-KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT 314
           +D GV +A+    I+A+                    P +V +  + +            
Sbjct: 268 VDSGVFQAIQEAGIAAL------------------NGPQEVVEELRKI------------ 297

Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
                          Y              ++R  ++ +    + G+   P +   Y + 
Sbjct: 298 ---------------Y--------------QERRDILVEGLRKL-GLEVEPPKATFYVW- 326

Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                      A       S  +A  LL++ G+ + PG GFG+  G  +FR
Sbjct: 327 -----------APVPKGYTSAEFATLLLDKAGVVVTPGNGFGE-YGEGYFR 365

Length = 385

>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 25/186 (13%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F  P+ V + A   L     Q    YT + G+  +R  +A + +RR G     + ++
Sbjct: 39  EPDFTAPEPVVEAAARALRRGVTQ----YTSALGLAPLREAIAAWYARRFGLDVAPERIV 94

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++AGAS  +      L+E  D     VL+P P YP     +A            E +   
Sbjct: 95  VTAGASAALLLACLALVERGDE----VLMPDPSYPCNRHFVAAA----------EGRPVL 140

Query: 141 LPISELER---SITEARKHCNP--RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
           +P    ER   +  +         R +++ +P NPTG  +  + ++ I++       F  
Sbjct: 141 VPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTI 200

Query: 196 ADEVYQ 201
            DE+YQ
Sbjct: 201 VDEIYQ 206

Length = 388

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
            K      S  +A + LE  G+ +VPG+GFG+ PG  + R ++    E L+  L +   F
Sbjct: 329 PKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARF 388

Query: 501 HEEF 504
             E+
Sbjct: 389 LAEY 392

Length = 393

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 20/183 (10%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F  PD +KQ A A ++  RG++   YT   G   +R+ +   + RR+G      ++ 
Sbjct: 42  EPDFDTPDHIKQAAVAAIE--RGET--KYTLVNGTPALRKAIIAKLERRNGLHYADNEIT 97

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           +  GA   I   L   +E  D     V+IP P +  Y   +   +   +     E + + 
Sbjct: 98  VGGGAKQAIFLALMATLEAGDE----VIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFK 153

Query: 141 LPISELERSITEARKHCNPRAI-VIIN-PGNPTGQVLTKENIQDIIKFAHRE-KLFLFAD 197
           L    LE +IT       PR   +I+N P NPTG V ++  ++ +     R   + +  D
Sbjct: 154 LTPEALEAAIT-------PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTD 206

Query: 198 EVY 200
           ++Y
Sbjct: 207 DIY 209

Length = 402

>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 54/207 (26%)

Query: 24  PRFPDD----VKQRAQAVLDGCRGQSVGS---------------YTDSP------GIEII 58
           P FP D     K +A +  DG    SVG+                 D+P      G   +
Sbjct: 2   PDFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADAPGYPQTWGTPEL 61

Query: 59  RRHVAQYISRRDGQPA-DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYP 115
           R  +  ++ RR G P  D   V+   G  + +  +  LL     G  PG  V+IP   YP
Sbjct: 62  REAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLL-----GLGPGDTVVIPELAYP 116

Query: 116 LY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ 173
            Y   A LA      +    D+  +   P+               P  I + +PGNPTG+
Sbjct: 117 TYEVGALLA--GATPVAA--DDPTELD-PVG--------------PDLIWLNSPGNPTGR 157

Query: 174 VLTKENIQDIIKFAHREKLFLFADEVY 200
           VL+ + ++ I+ +A      + +DE Y
Sbjct: 158 VLSVDELRAIVAWARERGAVVASDECY 184

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357

>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 28/167 (16%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG- 106
           Y+ S GI  +RR  A Y +RR G   +    V+ + G+ +G  ++ + +        PG 
Sbjct: 64  YSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAI------TAPGD 117

Query: 107 -VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS---ELERSITEARKHCNPRAI 162
            +L P P YP++            G+ +       +P     E   ++  A +H  P+ I
Sbjct: 118 VILCPNPSYPIH----------AFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPI 167

Query: 163 VII--NPGNPTGQVLTKENIQDIIKFAHREKLFLFAD----EVYQDN 203
            +I   P NPT  V   +  +D++ FA +  + + +D    E+Y D 
Sbjct: 168 ALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG 214

Length = 405

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPS-- 394
            +SV    KQR        N+I G+SC    GA Y +      A  I K   EGK     
Sbjct: 294 TESV-AVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNC---AGLIGKTTPEGKVLETD 349

Query: 395 ---VLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
              VLY   LL+  G+ +V G  +G  P   +FR
Sbjct: 350 QDVVLY---LLDSAGVAVVQGTAYGLSP---YFR 377

Length = 402

>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 37/228 (16%)

Query: 43  GQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG 102
            + +  Y D  G     R + + I+ R G PAD   +IL  G+ D I  + + ++     
Sbjct: 62  AELLRLYPDPQG-----RALREAIAARTGVPAD--RIILGNGSEDLIAVICRAVL----- 109

Query: 103 KKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN 158
            +PG  V+   P +PL+    ++    +E++      +   G  +  L  ++  A     
Sbjct: 110 -RPGDRVVTLYPSFPLHEDYPTMMGARVERV----TVTPDLGFDLDALCAAVARA----- 159

Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
           PR ++  NP NP G  LT + +  ++     E L +  DE Y +  YA G  + S   +L
Sbjct: 160 PRMLMFSNPSNPVGSWLTADQLARVLDATPPETL-IVVDEAYAE--YAAGDDYPSALTLL 216

Query: 219 VEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK 266
              G P+  + L +F   SK Y G  GLR GY   +  DP +  +L +
Sbjct: 217 KARGLPW--IVLRTF---SKAY-GLAGLRVGYG--LVSDPELVGLLDR 256

Length = 371

>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 49/207 (23%), Positives = 76/207 (36%), Gaps = 54/207 (26%)

Query: 24  PRFP----DDVKQRAQAVLDGCRGQSVGS---------------YTDSP------GIEII 58
           P FP       K  A A  DG    SVG+                 D+P      G   +
Sbjct: 8   PDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADAPGYPTTAGTPEL 67

Query: 59  RRHVAQYISRRDGQPADWQDVILSA-GASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYP 115
           R  +  +++RR G        +L   G+ + +  +  LL     G  PG  V+IP   YP
Sbjct: 68  REAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLL-----GLGPGDVVVIPELAYP 122

Query: 116 LY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ 173
            Y   A LA      +    D   + G                  P  I + +P NPTG+
Sbjct: 123 TYEVGARLA--GATVVRA--DSLTELGPQ---------------RPALIWLNSPSNPTGR 163

Query: 174 VLTKENIQDIIKFAHREKLFLFADEVY 200
           VL  ++++ ++ +A      + +DE Y
Sbjct: 164 VLGVDHLRKVVAWARERGAVVASDECY 190

Length = 364

>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 47/175 (26%)

Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER----SITEARKHCNPRAIVI 164
           + IP+       L  +++E +    DE  +W  P SELE+    SI         +A+ +
Sbjct: 204 LEIPE-------LPRYDLEVVHINADEENEWQYPDSELEKLRDPSI---------KALFL 247

Query: 165 INPGNPTGQVLTKEN---IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEM 221
           +NP NP    ++ E+   I DI+    R  L +  D+VY    + +   F S   VL   
Sbjct: 248 VNPSNPPSVAMSDESLEKIADIVN-EKRPDLMIITDDVY--GTFVDD--FRSLFAVL--- 299

Query: 222 GEPYKSMELASFMSCSKGYMGECGLRGG---------YSEVI-NLDPGVKAMLHK 266
             PY ++ + SF   SK Y G  G R G         + ++I  L    K  L K
Sbjct: 300 --PYNTILVYSF---SK-YFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDK 348

Length = 527

>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 19/184 (10%)

Query: 22  DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL 81
             P  P+ ++  A+A  D     +   Y    G+  +R   A + SR  G     + V +
Sbjct: 40  GYPPPPELLRALAEAAAD----PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHI 95

Query: 82  SAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIG-YYLD-ESKQW 139
           ++G +    + +  L    D     V++P+P Y  +   L    M  I   YL  +    
Sbjct: 96  TSGCNQAFWAAMVTLAGAGDE----VILPLPWYFNHKMWLD---MLGIRPVYLPCDEGPG 148

Query: 140 GLP-ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
            LP  +  E  IT        RAI ++ P NPTG V   E + ++   A R  + L  DE
Sbjct: 149 LLPDPAAAEALITPR-----TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDE 203

Query: 199 VYQD 202
            Y+D
Sbjct: 204 TYRD 207

Length = 386

>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 66  ISRRDGQPADWQDVILSAGASDG-IKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF 124
           +S+  G P +  ++I+     D  I ++++  I+  D     V+IP P +  Y  S    
Sbjct: 78  LSKYTGVPVE--NIIVGGDGMDEVIDTLMRTFIDPGDE----VIIPTPTFSYYEISAKAH 131

Query: 125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDII 184
             + +  Y    + + L +  +  +ITE       + I +  P NPTG ++ +E+I+ I+
Sbjct: 132 GAKPV--YAKREEDFSLDVDSVLNAITE-----KTKVIFLCTPNNPTGNLIPEEDIRKIL 184

Query: 185 KFAHREKLFLFADEVYQDNVYAE 207
           +        +F DE Y +  +AE
Sbjct: 185 E---STDALVFVDEAYVE--FAE 202

Length = 361

>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 34/176 (19%)

Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG 168
           + IP+ P Y   +     +++    D +  W  P  ELE+    + K     A+ ++NP 
Sbjct: 198 LEIPELPRYDFEVVRIKADEMTE--DGTHTWQYPDKELEKLRDPSIK-----ALFVVNPS 250

Query: 169 NPTGQVL---TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY 225
           NP    +   + E I DI+    R  L +  D+VY    + +   F S    L     PY
Sbjct: 251 NPPSVAMSDESIEKIVDIVA-NDRPDLMILTDDVY--GTFVDD--FRSLFAEL-----PY 300

Query: 226 KSMELASFMSCSKGYMGECGLRGG----YSEVI------NLDPGVKAMLHKSISAM 271
            ++ + SF   SK Y G  G R G    + + I       L    K  L K  S++
Sbjct: 301 NTIGVYSF---SK-YFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSL 352

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521

>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 31/143 (21%)

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-VLIPIPQYPLYSASLAEF 124
            +   G PA    V+   GA + I  + +LL        PG VL+  P Y       +E 
Sbjct: 56  AAAYYGLPAAS--VLPVNGAQEAIYLLPRLL-------APGRVLVLAPTY-------SE- 98

Query: 125 NMEQIGYYLDESKQWG---LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ 181
                  Y    +  G   + + +L+R      +      +V+ NP NPTG+++  E + 
Sbjct: 99  -------YARAWRAAGHEVVELPDLDRLPAALEEA---DLLVVCNPNNPTGRLIPPETLL 148

Query: 182 DIIKFAHREKLFLFADEVYQDNV 204
            +         +L  DE + D  
Sbjct: 149 ALAARLRARGGWLVVDEAFIDFT 171

This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330

>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 24/207 (11%)

Query: 39  DGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGASDGIKSVLKLLI 97
            G     V +YT+  G   IR  +A  ++   G P D  D +I++ G     +  L L +
Sbjct: 64  AGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGT----QGALFLAV 119

Query: 98  EDVDGKKPGVLIPIPQYPLYSASLAEF---NMEQIGY-YLDESKQWGLPISELERSITEA 153
                +   V I  P Y   +  L EF    M  +   YL   K+ GL + +LE    EA
Sbjct: 120 AATVARGDKVAIVQPDY-FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE----EA 174

Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS 213
            K    R  +  NP NP G V + E I  I   A R    +  D++Y   +Y +G+ +  
Sbjct: 175 FKA-GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY-DGTSYTH 232

Query: 214 FK-------KVLVEMGEPYKSMELASF 233
            +        V+  MG P K+  L+ +
Sbjct: 233 LRALPIDPENVITIMG-PSKTESLSGY 258

Length = 405

>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 62  VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL 121
           V  ++++R G   D + ++   G    + + ++ L    +G    V++  P YP + +++
Sbjct: 69  VINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTAPGEG----VIVQTPVYPPFLSAV 124

Query: 122 AEFNMEQIGYYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
                E +   L     ++   + +LE +ITE       R +++ +P NP G+V T+E +
Sbjct: 125 KSNGRELVLNPLKLDPGRYRFDLEDLEDAITE-----KARLLLLCSPHNPVGRVWTREEL 179

Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAE 207
             + +   R  + + +DE++ D VY  
Sbjct: 180 TRLAELCLRHNVVVVSDEIHADLVYPP 206

Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)

Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
             + L    +E++IT        RAIV I+P NPTG V  +  ++ + +      ++  +
Sbjct: 144 DNYQLQPEAIEQAITP-----KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHIS 198

Query: 197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
           DE Y+   Y +G K +S   +      P       S  S SK Y G    R GY
Sbjct: 199 DEAYEYFTY-DGVKHFSPGSI------PGSGNHTISLYSLSKAY-GFASWRIGY 244

Length = 389

>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 77  QDVILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLAEFNMEQIGYYL 133
           + ++ S GA + I+ +++   E      PG   +    P Y +Y+ S   FN+      L
Sbjct: 78  EQILTSRGADEAIELLIRAFCE------PGQDSIACFGPTYGMYAISAETFNVGVKALPL 131

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
                + LP+  +E+           + + I NP NPTG V+ + +I+ +I+
Sbjct: 132 TA--DYQLPLDYIEQL-------DGAKLVFICNPNNPTGTVIDRADIEQLIE 174

Length = 354

>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 46  VGSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSA-GASDGIKSVLKLLIEDVDG 102
           + +Y  + G+  +R+ +A+++ RR   P   D +  +L   G  + + +  + +I     
Sbjct: 57  LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQ- 115

Query: 103 KKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR 160
             P V++P P Y +Y  +A LA        Y+L+ + + G  + + +       + C  +
Sbjct: 116 -APLVVMPNPFYQIYEGAALLAGAEP----YFLNCTAENGF-LPDFDAVPESVWRRC--Q 167

Query: 161 AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
            + + +PGNPTG VL+ + ++ +I+ A +    + +DE Y
Sbjct: 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECY 207

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 51  DSP--GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-- 106
           D P  G E +R      I+ R     D   V+ + G+S+ I  VL  L+       PG  
Sbjct: 47  DGPSLGGEGLR----AAIADRWR-GGDAHVVMTTHGSSEAIYLVLTALLR------PGDE 95

Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN 166
           V++  P Y   S        E   + L   + +   +  L   +T        RA+V+  
Sbjct: 96  VVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTP-----RTRAVVVNF 150

Query: 167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
           P NPTG  +T   + ++++ A R    L  D  + D V+
Sbjct: 151 PHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVH 189

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	509
PLN02231	534	alanine transaminase	100.0
KOG0258|consensus	475		100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN02187	462	rooty/superroot1	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
KOG0259|consensus	447		100.0
PRK06855	433	aminotransferase; Validated	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
KOG0257|consensus	420		100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PLN02656	409	tyrosine transaminase	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PLN02368	407	alanine transaminase	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK07324	373	transaminase; Validated	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK09148	405	aminotransferase; Validated	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK07683	387	aminotransferase A; Validated	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK07337	388	aminotransferase; Validated	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
KOG0256|consensus	471		100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PLN02397	423	aspartate transaminase	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
KOG0634|consensus	472		100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
cd00609	350	AAT_like Aspartate aminotransferase family. This f	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.98
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.97
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.96
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.96
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.96
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.95
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.95
KOG0633|consensus	375		99.95
PLN02822	481	serine palmitoyltransferase	99.95
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.95
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.95
PRK10534	333	L-threonine aldolase; Provisional	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.94
PRK02627	396	acetylornithine aminotransferase; Provisional	99.94
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.94
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.94
PLN02483	489	serine palmitoyltransferase	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.94
PLN02721	353	threonine aldolase	99.94
PRK02948	381	cysteine desulfurase; Provisional	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.94
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.94
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.94
PRK13392	410	5-aminolevulinate synthase; Provisional	99.94
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.94
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.94
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.94
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.94
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.93
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.93
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.93
PRK07049	427	methionine gamma-lyase; Validated	99.93
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.93
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.93
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.92
PRK07179	407	hypothetical protein; Provisional	99.92
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.92
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.92
PRK09064	407	5-aminolevulinate synthase; Validated	99.92
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.92
PLN02409	401	serine--glyoxylate aminotransaminase	99.91
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.91
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.91
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.91
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.91
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.91
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.91
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.91
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.91
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.91
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.9
PRK13393	406	5-aminolevulinate synthase; Provisional	99.9
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.9
PLN02242	418	methionine gamma-lyase	99.9
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.9
PRK14012	404	cysteine desulfurase; Provisional	99.9
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.89
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.89
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.89
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.89
PRK06460	376	hypothetical protein; Provisional	99.88
KOG1412|consensus	410		99.88
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.88
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.88
PRK08045	386	cystathionine gamma-synthase; Provisional	99.88
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.88
PRK08776	405	cystathionine gamma-synthase; Provisional	99.88
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.88
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.87
PRK07582	366	cystathionine gamma-lyase; Validated	99.87
PRK06234	400	methionine gamma-lyase; Provisional	99.87
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.87
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.87
PRK08861	388	cystathionine gamma-synthase; Provisional	99.87
PLN02651	364	cysteine desulfurase	99.87
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.86
PRK08249	398	cystathionine gamma-synthase; Provisional	99.86
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.86
PRK06767	386	methionine gamma-lyase; Provisional	99.86
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.86
PRK07503	403	methionine gamma-lyase; Provisional	99.86
PRK04260	375	acetylornithine aminotransferase; Provisional	99.86
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.86
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.86
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.86
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.86
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.86
PLN00144	382	acetylornithine transaminase	99.86
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.85
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.85
PRK07050	394	cystathionine beta-lyase; Provisional	99.85
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.85
PRK07811	388	cystathionine gamma-synthase; Provisional	99.85
PRK07505	402	hypothetical protein; Provisional	99.85
KOG1549|consensus	428		99.85
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.85
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.85
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.84
PRK09028	394	cystathionine beta-lyase; Provisional	99.84
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.84
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.84
PLN02955	476	8-amino-7-oxononanoate synthase	99.84
PLN02624	474	ornithine-delta-aminotransferase	99.84
KOG1411|consensus	427		99.84
PRK08064	390	cystathionine beta-lyase; Provisional	99.84
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.83
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.83
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.83
PRK08574	385	cystathionine gamma-synthase; Provisional	99.83
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.83
PRK05968	389	hypothetical protein; Provisional	99.82
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.82
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.82
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.82
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.81
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.81
PRK07671	377	cystathionine beta-lyase; Provisional	99.81
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.81
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.8
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.8
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.8
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.8
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.8
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.8
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.8
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.79
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.79
PLN02509	464	cystathionine beta-lyase	99.79
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.79
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.78
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.78
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.78
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.78
PRK05939	397	hypothetical protein; Provisional	99.78
PRK05967	395	cystathionine beta-lyase; Provisional	99.77
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.77
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.77
KOG1368|consensus	384		99.77
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.76
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.76
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.75
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.75
PLN02724	805	Molybdenum cofactor sulfurase	99.74
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.73
PRK06541	460	hypothetical protein; Provisional	99.73
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.73
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.73
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.72
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.72
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK13237	460	tyrosine phenol-lyase; Provisional	99.72
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.72
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.71
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.71
PRK08114	395	cystathionine beta-lyase; Provisional	99.71
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.71
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.71
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.7
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.7
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.7
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.7
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.69
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.68
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.68
PRK02769	380	histidine decarboxylase; Provisional	99.68
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.68
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.67
PRK07678	451	aminotransferase; Validated	99.67
PRK03080	378	phosphoserine aminotransferase; Provisional	99.67
PRK05965	459	hypothetical protein; Provisional	99.66
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.66
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.66
PRK07046	453	aminotransferase; Validated	99.66
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.66
PRK07482	461	hypothetical protein; Provisional	99.65
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.65
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.65
PLN02880	490	tyrosine decarboxylase	99.65
KOG0053|consensus	409		99.65
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.65
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.64
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.64
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.64
PLN02590	539	probable tyrosine decarboxylase	99.64
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.64
PRK06917	447	hypothetical protein; Provisional	99.63
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.63
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.63
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.63
PRK07480	456	putative aminotransferase; Validated	99.63
PRK07036	466	hypothetical protein; Provisional	99.63
PRK06434	384	cystathionine gamma-lyase; Validated	99.63
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.63
PRK06105	460	aminotransferase; Provisional	99.63
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.62
PLN03032	374	serine decarboxylase; Provisional	99.62
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.62
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.62
PRK06062	451	hypothetical protein; Provisional	99.62
PRK07481	449	hypothetical protein; Provisional	99.61
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.61
KOG1359|consensus	417		99.61
KOG1360|consensus	570		99.61
PRK12403	460	putative aminotransferase; Provisional	99.6
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.59
PRK07483	443	hypothetical protein; Provisional	99.58
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.58
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.57
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.57
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.56
PRK06148	1013	hypothetical protein; Provisional	99.56
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.55
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.55
PRK06149	972	hypothetical protein; Provisional	99.55
PRK08297	443	L-lysine aminotransferase; Provisional	99.53
KOG1401|consensus	433		99.53
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.52
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.52
PRK04311	464	selenocysteine synthase; Provisional	99.51
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.5
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.49
PRK15029	755	arginine decarboxylase; Provisional	99.46
PLN02271	586	serine hydroxymethyltransferase	99.46
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.45
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.44
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.43
PLN02263	470	serine decarboxylase	99.43
PRK13578	720	ornithine decarboxylase; Provisional	99.42
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.41
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.4
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.39
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.39
PRK05367	954	glycine dehydrogenase; Provisional	99.37
KOG1404|consensus	442		99.37
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.37
KOG1402|consensus	427		99.36
PLN02452	365	phosphoserine transaminase	99.35
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.35
PRK15400	714	lysine decarboxylase CadA; Provisional	99.34
KOG2862|consensus	385		99.33
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.33
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.32
PRK12566	954	glycine dehydrogenase; Provisional	99.32
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.31
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.31
KOG1357|consensus	519		99.31
PRK12462	364	phosphoserine aminotransferase; Provisional	99.22
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.13
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.09
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.08
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.01
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.0
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.93
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.93
PRK05367	954	glycine dehydrogenase; Provisional	98.9
KOG1383|consensus	491		98.86
KOG1358|consensus	467		98.84
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.79
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.55
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.44
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.4
KOG1403|consensus	452		98.38
KOG0629|consensus	510		98.34
COG4100	416	Cystathionine beta-lyase family protein involved i	98.3
KOG0628|consensus	511		98.27
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.24
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.2
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.14
KOG1405|consensus	484		98.05
KOG3843|consensus	432		97.96
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.75
KOG2467|consensus	477		97.74
PRK12566	954	glycine dehydrogenase; Provisional	97.05
PLN02672	1082	methionine S-methyltransferase	96.0
KOG2790|consensus	370		95.77
KOG2040|consensus	1001		95.73
KOG3846|consensus	465		91.84
COG2102	223	Predicted ATPases of PP-loop superfamily [General	91.54
KOG1201|consensus	300		83.43

>PLN02231 alanine transaminase

Probab=100.00  E-value=3.2e-56  Score=474.80  Aligned_cols=413  Identities=48%  Similarity=0.833  Sum_probs=351.1

Q ss_pred             chHHHHHHHHhhcCCCCC----CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE
Q psy13922          4 VFSLSLQVLALVSLPQLF----DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV   79 (509)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~----~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i   79 (509)
                      +++++|+++.+++.|..+    +.+.||.++++++.+.+.+..+...++|+++.|.+++|++|++++.+++|+++++++|
T Consensus       115 ~~~~~r~v~~~~~~p~~i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I  194 (534)
T PLN02231        115 PITFFREVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDI  194 (534)
T ss_pred             ccHHHHHHHHhccCCccCCCCCccccCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccE
Confidence            578999999999988887    4667899999998888876544456679999999999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHHHhhc-CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-C
Q psy13922         80 ILSAGASDGIKSVLKLLIE-DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-C  157 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~  157 (509)
                      ++|+|+++++.++++.++. +||    .|+++.|+|..|...++..|.+++.++++++++|++|++.|++.++..... .
T Consensus       195 ~iT~Ga~~ai~~~~~~l~~~~gd----~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~  270 (534)
T PLN02231        195 FLTDGASPAVHMMMQLLIRSEKD----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGI  270 (534)
T ss_pred             EEeCCHHHHHHHHHHHhccCCCC----EEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCC
Confidence            9999999999999999985 688    999999999999999999999999999988778999999999999764322 2


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++++|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|.++..+.++.++..+++..+.+.++|+++|||
T Consensus       271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~S  350 (534)
T PLN02231        271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS  350 (534)
T ss_pred             CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccC
Confidence            68999999999999999999999999999999999999999999999964446677777755443222245699999999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      |.+.|+||+|+||+++.+.++++++.+.+..+...+++..                                  +|.++.
T Consensus       351 K~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~----------------------------------~Q~~~~  396 (534)
T PLN02231        351 KGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNIS----------------------------------GQILAS  396 (534)
T ss_pred             cccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChH----------------------------------HHHHHH
Confidence            9754789999999974334789999998876644556666                                  777777


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .++++++.+++.|+.+.++.+.+++.++++++.+.+.|++++|+.+.+|+|+||+|+++++|..........+..++..+
T Consensus       397 ~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~  476 (534)
T PLN02231        397 LVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFY  476 (534)
T ss_pred             HHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHH
Confidence            78876666678899998888999999999999999999999899999999999999888877654333344455556667


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +..+++++||.++||+.|+..                                               ++.        .
T Consensus       477 ~~~Ll~~~GV~vvPGs~Fg~~-----------------------------------------------~g~--------~  501 (534)
T PLN02231        477 CKRLLNATGIVVVPGSGFGQV-----------------------------------------------PGT--------W  501 (534)
T ss_pred             HHHHHHhcCEEEeCCcccCCC-----------------------------------------------CCC--------C
Confidence            788999999999999988762                                               232        3


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                      +||++|+.++++|+++++||+++++++.+||+
T Consensus       502 ~~Rit~~~~~e~l~eal~RL~~~~~~~~~~~~  533 (534)
T PLN02231        502 HFRCTILPQEDKIPAIVSRLTEFHKSFMDEFR  533 (534)
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999996

>KOG0258|consensus

Probab=100.00  E-value=9.5e-55  Score=419.19  Aligned_cols=411  Identities=60%  Similarity=1.032  Sum_probs=381.4

Q ss_pred             CchHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEe
Q psy13922          3 PVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS   82 (509)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t   82 (509)
                      -|++++||++.+++.|.+++.|.||.+++++..+.+..+.+ ..+.|+.+.|.+-+|+.||+|+.++.|.+.++++|++|
T Consensus        64 ~PiTF~RQvlal~~~p~lLd~~~fp~Dai~RA~~~L~~~gG-s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT  142 (475)
T KOG0258|consen   64 KPITFLRQVLALCQYPELLDSPEFPTDAIKRAKRILNDCGG-SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLT  142 (475)
T ss_pred             CChhHHHHHHHHhcChhhcCCCCCCHHHHHHHHHHHHhcCC-cccccccccCChhHHHHHHHHHHhccCCCCCHHHeeec
Confidence            37889999999999999999999999999999999999877 78889999999999999999999999988999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEE
Q psy13922         83 AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAI  162 (509)
Q Consensus        83 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~i  162 (509)
                      +|++.++..++..++..   +++.|++|.|.|+-|...+..+|...+.+.++++.+|.+|.++|++.+.++.++.+++++
T Consensus       143 ~GAS~ai~~il~l~~~~---~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~l  219 (475)
T KOG0258|consen  143 TGASPAIRSILSLLIAG---KKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRAL  219 (475)
T ss_pred             CCCcHHHHHHHHHHhcC---CCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEE
Confidence            99999999999998754   345999999999999999999999999999999999999999999999998877899999


Q ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCC-CceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYK-SMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~  241 (509)
                      ++.||.||||.+++++.+++|+.+|.++++.++.||+|.+..|.++.+|.|+.....++++.++ .+..++++|.||.+.
T Consensus       220 vvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~  299 (475)
T KOG0258|consen  220 VVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYM  299 (475)
T ss_pred             EEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccce
Confidence            9999999999999999999999999999999999999999999988899999999999998876 778899999999999


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                      |-.|.|.||+-+++.+++..+.+.+..+...+++..                                  +|+.+....+
T Consensus       300 gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~----------------------------------GQ~~vdl~Vn  345 (475)
T KOG0258|consen  300 GECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVS----------------------------------GQKLVDLVVN  345 (475)
T ss_pred             eeecccCCeeecccCChhHHHHHHHHHhhhhcCCcc----------------------------------chhhhceecC
Confidence            999999999998888999999999998888888888                                  9999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                      ++.+++.+|+.+..+...+...++.+...+.+.++.++|+.+.+++|.||++.++.+|.++...+...|+.+++.++.++
T Consensus       346 PP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~L  425 (475)
T KOG0258|consen  346 PPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKL  425 (475)
T ss_pred             CCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888888888887777777777


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |+..||.++||+                                                       ||||.+|+++||.
T Consensus       426 Le~tGIcvVPGS-------------------------------------------------------GFGQ~~GtyH~R~  450 (475)
T KOG0258|consen  426 LEATGICVVPGS-------------------------------------------------------GFGQKEGTYHFRT  450 (475)
T ss_pred             HHhcCeEEecCC-------------------------------------------------------CCCCCCceeEEEE
Confidence            777777777554                                                       5666788889999


Q ss_pred             EeecChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        482 TILPQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       482 s~~~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                      ++-.+.  + +.+++++++..+|..+|+
T Consensus       451 TiLp~~--~-~~i~~~~~fH~~f~~~Y~  475 (475)
T KOG0258|consen  451 TILPPG--L-EIIEKFKKFHAEFMDEYR  475 (475)
T ss_pred             eecCch--h-HHHHHHHHHHHHHHHhhC
Confidence            998655  5 889999999999999986

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=1.6e-53  Score=452.75  Aligned_cols=412  Identities=51%  Similarity=0.906  Sum_probs=340.5

Q ss_pred             chHHHHHHHHhhcCCCCCCCC----CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE
Q psy13922          4 VFSLSLQVLALVSLPQLFDDP----RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV   79 (509)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~----~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i   79 (509)
                      +.+++|+++.....|..+..+    .+|..+++++.++++.... ....|+++.|.++||+++++++++++|+++++++|
T Consensus        63 ~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I  141 (481)
T PTZ00377         63 PLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGG-GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDI  141 (481)
T ss_pred             CchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCC-cccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhE
Confidence            467899999988888877433    3788999998887776432 34559999999999999999999989999999999


Q ss_pred             EEeCCHHHHHHHHHHHhh-cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-C
Q psy13922         80 ILSAGASDGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-C  157 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~  157 (509)
                      ++|+|+++++.+++++++ ++||    .|+++.|+|..|...++..|++++.++++++.+|.+|++.|++.+++..+. .
T Consensus       142 ~it~Ga~~al~~~~~~l~~~~gD----~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  217 (481)
T PTZ00377        142 FLTDGASSGIKLLLQLLIGDPSD----GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGI  217 (481)
T ss_pred             EEcCCHHHHHHHHHHHhccCCCC----EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCC
Confidence            999999999999999998 6898    999999999999999999999999999987778999999999998753221 2


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCC-CceeEEEEec
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYK-SMELASFMSC  236 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~  236 (509)
                      ++++|++++||||||.++|.+++++|+++|+++|++||+||+|.++.|+++.++.++.++..++...+. ..++|+++||
T Consensus       218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~  297 (481)
T PTZ00377        218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHST  297 (481)
T ss_pred             CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecC
Confidence            689999999999999999999999999999999999999999999998544355666655444432211 2369999999


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchh
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM  316 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  316 (509)
                      ||.+.|+||+|+||+++.+.++++++++.+......+++.+                                  +|.++
T Consensus       298 SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~----------------------------------~Q~a~  343 (481)
T PTZ00377        298 SKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVV----------------------------------GQLMT  343 (481)
T ss_pred             CcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChH----------------------------------HHHHH
Confidence            99732799999999973223899999998877655567777                                  67777


Q ss_pred             hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      ..++++...+++.++.+.++++++++.++++++.+.+.|++++|+.+..|+||||+|+++++|..........++.++..
T Consensus       344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~  423 (481)
T PTZ00377        344 GLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVL  423 (481)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHH
Confidence            76666544445667778888888888999999999999999989999999999999988877765443344445555666


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ++..+++++||.++||+.|+..                                               ++.+       
T Consensus       424 ~~~~ll~~~gV~v~pG~~F~~~-----------------------------------------------~~~~-------  449 (481)
T PTZ00377        424 YCLELLESTGIVVVPGSGFGQK-----------------------------------------------PGTY-------  449 (481)
T ss_pred             HHHHHHHHcCEEEeCCcccCCC-----------------------------------------------CCCC-------
Confidence            7789999999999999998751                                               2323       


Q ss_pred             eeEEEEeecChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        477 YHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       477 ~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                       +||+|++.+++++++++++|+++++++.+||.
T Consensus       450 -~~Rls~~~~~e~l~~~l~rl~~~~~~~~~~~~  481 (481)
T PTZ00377        450 -HFRITILPPEEQIEEMVKKIKEFHESFMKKYG  481 (481)
T ss_pred             -EEEEEECCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence             99999998888999999999999999999984

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-53  Score=439.90  Aligned_cols=351  Identities=30%  Similarity=0.500  Sum_probs=306.7

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc-EEEeCCHHHHHHHHHHHhh
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~   97 (509)
                      +|.|++  |+.+++++.+++.+   +.. +|.+..|.++||+++++++.+++|..+++++ |++|+|+++|+.+++.++.
T Consensus        35 iG~Pd~~~p~~i~~a~~~a~~~---~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~  110 (393)
T COG0436          35 IGEPDFPTPEHIIEAAIEALEE---GGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL  110 (393)
T ss_pred             CCCCCCCCCHHHHHHHHHHHhc---ccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc
Confidence            488877  67899999999998   333 5889999999999999999999998988886 9999999999999999999


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCC-CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ++||    +|++++|.|..|...+..+|++++.++++.+ .+|.+|++.|++++++     ++|+|++++||||||.+++
T Consensus       111 ~pGD----eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-----ktk~i~ln~P~NPTGav~~  181 (393)
T COG0436         111 NPGD----EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-----KTKAIILNSPNNPTGAVYS  181 (393)
T ss_pred             CCCC----EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-----cceEEEEeCCCCCcCcCCC
Confidence            9999    9999999999999999999999999998655 4899999999999998     8999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      ++++++|+++|++||++||+||+|.++.|++. .+.++.++...      ..++|+++||||.| |++|||+||++   +
T Consensus       182 ~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~-~~~s~~~~~~~------~~~~i~i~s~SK~~-~mtGwRvG~~v---~  250 (393)
T COG0436         182 KEELKAIVELAREHDIIIISDEIYEELVYDGA-EHPSILELAGA------RDRTITINSFSKTY-GMTGWRIGWVV---G  250 (393)
T ss_pred             HHHHHHHHHHHHHcCeEEEEehhhhhcccCCC-CcCCHhhcCCC------cceEEEEecccccc-cccccceeEee---c
Confidence            99999999999999999999999999999853 46677665432      23499999999999 79999999998   5


Q ss_pred             C-HHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        257 D-PGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       257 ~-~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                      + +++++.+.+++. ...+++.+                                  .|.+...+++..+       . .
T Consensus       251 ~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~Q~aa~~aL~~~~-------~-~  288 (393)
T COG0436         251 PPEELIAALRKLKSYLTSCAPTP----------------------------------AQYAAIAALNGPQ-------S-D  288 (393)
T ss_pred             ChHHHHHHHHHHHHhcccCCCHH----------------------------------HHHHHHHHhcCcc-------c-h
Confidence            6 889999987777 56688888                                  6666666655321       1 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      .+.+.+++.+++|++.+.+.|.+++|+.+.. |+|+||+|++++.            ..++.+|+..+|+++||.++||.
T Consensus       289 ~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~------------~~d~~~f~~~Ll~~~gV~v~PG~  356 (393)
T COG0436         289 EVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPE------------LLDSEEFAKKLLEEAGVAVVPGS  356 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCC------------CCCHHHHHHHHHHhCCEEEeccc
Confidence            3477788999999999999999998899887 8899999988862            24788899999999999999999


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAM  493 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~  493 (509)
                      .|+..                                               .|.+        |||+|++.+.+.++++
T Consensus       357 ~Fg~~-----------------------------------------------~g~~--------~vRis~~~~~~~l~~a  381 (393)
T COG0436         357 GFGEP-----------------------------------------------PGEG--------YVRLSLATSEETLEEA  381 (393)
T ss_pred             ccCCC-----------------------------------------------CCCC--------eEEEEEecCHHHHHHH
Confidence            99982                                               2555        9999999888999999


Q ss_pred             HHHHHHHHHHH
Q psy13922        494 LEKFREFHEEF  504 (509)
Q Consensus       494 ~~~l~~~~~~~  504 (509)
                      +++|.++++.+
T Consensus       382 ~~rl~~~~~~~  392 (393)
T COG0436         382 LRRLARFLAEY  392 (393)
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=2.6e-47  Score=397.62  Aligned_cols=363  Identities=20%  Similarity=0.321  Sum_probs=299.2

Q ss_pred             HHHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-c
Q psy13922          6 SLSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-D   78 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~   78 (509)
                      +.++.++..+..++.+    |.|++  |+.+.+++.+++.+   . ..+|++..|.++||+++++++++++|++++++ +
T Consensus        42 ~~~~~~~~~~~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~  117 (413)
T PLN00175         42 TIFTQMSSLAIKHGAINLGQGFPNFDGPDFVKEAAIQAIRD---G-KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKE  117 (413)
T ss_pred             CHHHHHHHHhhcCCeEecCCCCCCCCCCHHHHHHHHHHHhc---C-CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            4566666666555543    66665  66788888888876   2 34599999999999999999999999888887 7


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCC
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN  158 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~  158 (509)
                      |++|+|+++++..++..++++||    .|++++|+|..+...++..|++++.+++++++ |.+|++.|++.+..     +
T Consensus       118 I~vt~G~~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~l~~~~~~-----~  187 (413)
T PLN00175        118 VTVTSGCTEAIAATILGLINPGD----EVILFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPEDELKAAFTS-----K  187 (413)
T ss_pred             EEEeCCHHHHHHHHHHHhCCCCC----EEEEeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHHHHHHhcCc-----C
Confidence            99999999999999999999998    99999999999999999999999999997653 78999999999876     7


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      +++|++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++  .+.++.++.. .     ..++|+++||||
T Consensus       188 ~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~--~~~s~~~~~~-~-----~~~vi~i~SfSK  259 (413)
T PLN00175        188 TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG--DHISMASLPG-M-----YERTVTMNSLGK  259 (413)
T ss_pred             ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC--cccChhhCCC-C-----cCcEEEEecchh
Confidence            9999999999999999999999999999999999999999999998864  3345544321 1     235999999999


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      .| |++|+|+||++   +++++++.+.+... ...+.+.+                                  .|.++.
T Consensus       260 ~~-~~~G~RiG~~v---~~~~l~~~l~~~~~~~~~~~s~~----------------------------------~Q~a~~  301 (413)
T PLN00175        260 TF-SLTGWKIGWAI---APPHLTWGVRQAHSFLTFATATP----------------------------------MQWAAV  301 (413)
T ss_pred             hc-cCcchheeeeE---eCHHHHHHHHHHHhhccCCCCHH----------------------------------HHHHHH
Confidence            99 79999999998   79999999988765 34567777                                  565555


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .+++.          ...++++.++.++++++.+.+.|++. |+.+.+|+|++|+|+++. +         .++.++.++
T Consensus       302 ~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~-~---------~~~~~~~~~  360 (413)
T PLN00175        302 AALRA----------PESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHT-P---------FGFENDIAF  360 (413)
T ss_pred             HHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecc-c---------cCCCCHHHH
Confidence            55541          12347888999999999999999998 888889999999998763 1         133345677


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +..+++++||.+.||..|+....                                             .+.+        
T Consensus       361 ~~~ll~~~gV~v~pg~~F~~~~~---------------------------------------------~~~~--------  387 (413)
T PLN00175        361 CEYLIEEVGVAAIPPSVFYLNPE---------------------------------------------DGKN--------  387 (413)
T ss_pred             HHHHHHhCCEEEeCchHhCCCCC---------------------------------------------CCCC--------
Confidence            78888889999999998864100                                             1222        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                      ++||+|+.++++|++++++|+++++
T Consensus       388 ~iRls~~~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        388 LVRFAFCKDEETLRAAVERMKTKLK  412 (413)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999875

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=1.4e-47  Score=397.50  Aligned_cols=345  Identities=20%  Similarity=0.290  Sum_probs=283.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|.+  |+.+.+++.+.+..   ....+|+++.|.++||+++++++.+++|+.++++ +|++|+|+++++.++++.+++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~  114 (388)
T PRK07366         38 GSSDLPAPAHALEAIAQSLHD---PSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLN  114 (388)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---cccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCC
Confidence            56665  56788888877765   3345599999999999999999999899999998 699999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|..+...++..|++++.++++++++|.+|++.+++.+..     ++++|++++||||||.++|.+
T Consensus       115 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~~p~NPTG~~~s~~  185 (388)
T PRK07366        115 PGD----FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA-----QARLMVLSYPHNPTTAIAPLS  185 (388)
T ss_pred             CCC----EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc-----cceEEEEeCCCCCCCccCCHH
Confidence            998    99999999999999999999999999998777788999999887765     689999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.+|.+++.....++.++.++      ..++|+++||||.| |+||+|+||++   +++
T Consensus       186 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~------~~~vi~~~SfSK~~-g~~GlRiG~~v---~~~  255 (388)
T PRK07366        186 FFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPE------KSVSIEFFTLSKSY-NMGGFRIGFAI---GNA  255 (388)
T ss_pred             HHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCC------cccEEEEeeccccc-CCcchhheehc---CCH
Confidence            999999999999999999999999998643224455444221      23589999999999 79999999998   899


Q ss_pred             HHHHHHHHhhhcc-cCc-chhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        259 GVKAMLHKSISAM-LCP-TVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++.+.+....+ .+. +..                                  .+.++..+.+           ..++
T Consensus       256 ~li~~l~~~~~~~~~~~~~~~----------------------------------~~~a~~~l~~-----------~~~~  290 (388)
T PRK07366        256 QLIQALRQVKAVVDFNQYRGI----------------------------------LNGAIAALTG-----------PQAT  290 (388)
T ss_pred             HHHHHHHHHHhhcccCCCHHH----------------------------------HHHHHHHHhC-----------cHHH
Confidence            9999998876632 222 222                                  2333333322           1245


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCC-CcHHHHHHHHhhcCeEEecCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKC-PSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++++++.++++++.+.+.|+++ ++.+..|++|+|+|++++-           ++. ++.+++..+++++||.++||..|
T Consensus       291 l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~~-----------~~~~~~~~~~~~l~~~~gv~v~pg~~f  358 (388)
T PRK07366        291 VQQTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKLPE-----------PWQGNSVEFCTQLVAQTGVAASPGSGF  358 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCc-----------ccCCCHHHHHHHHHHhCCEEEeCchHh
Confidence            8889999999999999999988 7877789999999987751           111 24555677778899999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        |+||+++.++++++++++
T Consensus       359 ~~------------------------------------------------~~~~--------~iRi~~~~~~~~l~~~l~  382 (388)
T PRK07366        359 GK------------------------------------------------SGEG--------YVRFALVHDPDILEEAVE  382 (388)
T ss_pred             Cc------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHH
Confidence            65                                                2323        999999988999999999


Q ss_pred             HHHHHH
Q psy13922        496 KFREFH  501 (509)
Q Consensus       496 ~l~~~~  501 (509)
                      +|++++
T Consensus       383 rl~~~l  388 (388)
T PRK07366        383 RIAAFL  388 (388)
T ss_pred             HHHHhC
Confidence            998763

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=3.7e-47  Score=398.12  Aligned_cols=351  Identities=23%  Similarity=0.375  Sum_probs=288.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+.+++.++++.   ...+.|++..|.+++|++++++++.++|.++++++|++|+|++++|.+++..+.++||    +
T Consensus        71 ~~~~~~a~~~al~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd----~  143 (430)
T PLN00145         71 APEAEDAVAAALRS---GKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGA----N  143 (430)
T ss_pred             CHHHHHHHHHHHHc---CcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCC----E
Confidence            67899999988887   4455699999999999999999999889899999999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..|...+...|++++.+++.++.+|.+|++.+++.+++     +++++++++||||||.+++.+++++|+++
T Consensus       144 Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~P~NPtG~v~~~~~l~~i~~~  218 (430)
T PLN00145        144 ILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE-----NTVAMVIINPNNPCGSVYSYEHLAKIAET  218 (430)
T ss_pred             EEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc-----CceEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999987777899999999998877     79999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH-----
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK-----  261 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~-----  261 (509)
                      |+++|++||+||+|.+|.+++ ..+.++..+..       ..++|+++||||.| ++||+|+||++. ..++.++     
T Consensus       219 a~~~~i~ii~De~Y~~~~~~~-~~~~~~~~~~~-------~~~vi~~~S~SK~~-~~pG~RlG~iv~-~~~~~~~~~~~~  288 (430)
T PLN00145        219 ARKLGILVIADEVYDHLTFGS-KPFVPMGVFGE-------VAPVLTLGSISKRW-VVPGWRLGWIAT-CDPNGILKETKV  288 (430)
T ss_pred             HHHcCCEEEEeccchhhccCC-CCccchhhhcc-------cCcEEEEecccccc-CCCCeeEEEEEE-ecchhhhhhhHH
Confidence            999999999999999998864 24455544321       23599999999999 799999999972 1133333     


Q ss_pred             -HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHH
Q psy13922        262 -AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSV  340 (509)
Q Consensus       262 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  340 (509)
                       ..+........+++.+                                  .|.++..++..         ...+++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~----------------------------------~Q~a~~~~l~~---------~~~~~~~~~  325 (430)
T PLN00145        289 VDSIRNYLNISTDPATF----------------------------------VQGAIPQIIAN---------TKEEFFTKT  325 (430)
T ss_pred             HHHHHHHhcccCCCCHH----------------------------------HHHHHHHHHhc---------CHHHHHHHH
Confidence             3344443333455666                                  55555555431         113447888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        341 LDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       341 ~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      ++.++++++.+.+.|++++++.+. .|+|++|+|++++...       ..++.++.+++..+++++||.+.||..|+.  
T Consensus       326 ~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~-------~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--  396 (430)
T PLN00145        326 LGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSC-------LSGIKDDMDFCCKLAKEESVVVLPGSALGM--  396 (430)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhh-------cCCCCCHHHHHHHHHHhCCEEEeCccccCC--
Confidence            999999999999999998888864 7999999998775210       012334667788999999999999998876  


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                                    ++          |+||+|+.+.++|+++++||++
T Consensus       397 ----------------------------------------------~~----------~lRis~~~~~~~l~~al~rl~~  420 (430)
T PLN00145        397 ----------------------------------------------KN----------WLRITFAIDPPSLEDGLERLKS  420 (430)
T ss_pred             ----------------------------------------------CC----------eEEEEeCCCHHHHHHHHHHHHH
Confidence                                                          44          9999999999999999999999


Q ss_pred             HHHHHHhh
Q psy13922        500 FHEEFLAK  507 (509)
Q Consensus       500 ~~~~~~~~  507 (509)
                      ++.++.++
T Consensus       421 ~~~~~~~~  428 (430)
T PLN00145        421 FCLRHAKL  428 (430)
T ss_pred             HHHHhccc
Confidence            99887764

>PLN02187 rooty/superroot1

Probab=100.00  E-value=5.2e-47  Score=399.74  Aligned_cols=351  Identities=23%  Similarity=0.380  Sum_probs=287.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+.+++.++++.   +....|++..|.+++|+++|+++++++++++++++|++|+|++++|..++.+++++||    .
T Consensus        85 ~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd----~  157 (462)
T PLN02187         85 CIEAEDAVVDVLRS---GKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNA----N  157 (462)
T ss_pred             CHHHHHHHHHHHhC---CCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCC----E
Confidence            56788998888876   3445699999999999999999999889899999999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..|...++..|++++.+++.++.+|.+|++.|+++++.     ++++++++|||||||.+++.+++++|+++
T Consensus       158 Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~-----~~~~v~i~nP~NPTG~v~s~e~l~~i~~~  232 (462)
T PLN02187        158 ILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE-----NTVAMVVINPNNPCGNVYSHDHLKKVAET  232 (462)
T ss_pred             EEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCC-----CcEEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence            9999999999999999999999999987666799999999998876     78999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH----HHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG----VKA  262 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~----~~~  262 (509)
                      |+++|++||+||+|.++.+++. .+.++.++..       ..++|+++||||.| |+||+|+||++.  .+++    +++
T Consensus       233 a~~~~i~iI~DE~Y~~l~f~~~-~~~s~~~~~~-------~~~vi~l~SfSK~f-~~pGlRiG~~v~--~~p~~~~~~~~  301 (462)
T PLN02187        233 ARKLGIMVISDEVYDRTIFGDN-PFVSMGKFAS-------IVPVLTLAGISKGW-VVPGWKIGWIAL--NDPEGVFETTK  301 (462)
T ss_pred             HHHCCCEEEEeccccccccCCC-CceeHHHhcc-------CCcEEEEecchhhc-CCccceeEEEEe--cCchhHHHHHH
Confidence            9999999999999999998643 4455554421       12499999999999 799999999972  3443    334


Q ss_pred             HHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        263 MLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       263 ~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      .+......+   .+++.+                                  .|.++..+++.         ...+++++
T Consensus       302 ~~~~~~~~~~~~~~~s~~----------------------------------~Q~a~~~~L~~---------~~~~~l~~  338 (462)
T PLN02187        302 VLQSIKQNLDVTPDPATI----------------------------------IQAALPAILEK---------ADKNFFAK  338 (462)
T ss_pred             HHHHHHHhccccCCCCHH----------------------------------HHHHHHHHHhc---------CcHHHHHH
Confidence            555544422   234666                                  56666655531         12245888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      +++.++++++.+.+.|++++++. +..|++++|+|+++..+.       ..++.++.+++..++.++||.++||..|+. 
T Consensus       339 ~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-------~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-  410 (462)
T PLN02187        339 KNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSL-------MDNIKDDIDFCVKLAREENLVFLPGDALGL-  410 (462)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhh-------CCCCCCHHHHHHHHHhhCCEEEECccccCC-
Confidence            99999999999999999986554 346889999998764211       012334556678888999999999998865 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     ++          ||||+|+.+++.|+++++||.
T Consensus       411 -----------------------------------------------~~----------~iRis~~~~~e~l~~al~rL~  433 (462)
T PLN02187        411 -----------------------------------------------KN----------WMRITIGVEAHMLEDALERLK  433 (462)
T ss_pred             -----------------------------------------------CC----------eEEEEeCCCHHHHHHHHHHHH
Confidence                                                           44          999999999999999999999


Q ss_pred             HHHHHHHhhc
Q psy13922        499 EFHEEFLAKY  508 (509)
Q Consensus       499 ~~~~~~~~~~  508 (509)
                      ++++++.++.
T Consensus       434 ~~l~~~~~~~  443 (462)
T PLN02187        434 GFCTRHAKKT  443 (462)
T ss_pred             HHHHHhhhcc
Confidence            9999887764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=5.4e-47  Score=395.14  Aligned_cols=370  Identities=22%  Similarity=0.342  Sum_probs=289.1

Q ss_pred             HHHHHHHhhcCCCCC----CCCC----C--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC
Q psy13922          7 LSLQVLALVSLPQLF----DDPR----F--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW   76 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~----~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~   76 (509)
                      .++..+.....++.+    |+|+    |  |+.+.+++.+++.+   ...++|+++.|.+++|+++++++.+++|+++++
T Consensus        21 ~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~   97 (409)
T PLN00143         21 FLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS---AKFNSYAPTGGILPARRAIADYLSNDLPYQLSP   97 (409)
T ss_pred             HHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC---cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCH
Confidence            334433333344443    7775    5  67888999998887   445569999999999999999999998988999


Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      ++|++|+|+++++..++++++++||    .|+++.|+|..|...++..|.+++.++++++.+|.+|++.|+++++.    
T Consensus        98 ~~I~it~G~~~al~~~~~~l~~~gd----~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----  169 (409)
T PLN00143         98 DDVYLTLGCKHAAEIIIKVLARPEA----NILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE----  169 (409)
T ss_pred             hhEEEecChHHHHHHHHHHHcCCCC----EEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc----
Confidence            9999999999999999999999998    99999999999999999999999999987656789999999988866    


Q ss_pred             CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       157 ~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                       ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. .+.++..+..       ..++|+++||
T Consensus       170 -~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~-------~~~vi~~~Sf  240 (409)
T PLN00143        170 -NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK-PFVPMGLFAS-------IVPVITLGSI  240 (409)
T ss_pred             -CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC-CCcchhhhcc-------cCcEEEEccc
Confidence             789999999999999999999999999999999999999999999998642 3344433321       2359999999


Q ss_pred             ccccCCCCCCeeEEEeeecCCH-HH------HHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        237 SKGYMGECGLRGGYSEVINLDP-GV------KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~-~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      ||.| |+||+|+||++.  .++ .+      ++.+.+.......++.+                                
T Consensus       241 SK~f-~~pGlRvG~~v~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  285 (409)
T PLN00143        241 SKRW-MIPGWGLGWLVT--CDPSGLLQICEIADSIKKALNPAPFPPTF--------------------------------  285 (409)
T ss_pred             hhhc-CCCccceEEEEe--eCchhhhhhHHHHHHHHHHHhccCCCCch--------------------------------
Confidence            9999 799999999972  233 33      33343333222233455                                


Q ss_pred             ccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee-ccCCceeEEeecCCCCHHHHHHHhh
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                        .|.++..++..         ....++++.++.++++++.+.+.|+++++..+ ..|+|++|+|++++...       .
T Consensus       286 --~q~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~-------~  347 (409)
T PLN00143        286 --IQAAIPEILEK---------TTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLL-------L  347 (409)
T ss_pred             --HHHHHHHHHhc---------ChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhh-------c
Confidence              55555555431         11234777788888888989999988754443 46889999998775100       0


Q ss_pred             cCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCC
Q psy13922        389 EGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGA  468 (509)
Q Consensus       389 ~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (509)
                      .++.++.+++..+++++||.++||..|+.                                                .+ 
T Consensus       348 ~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------------------------------------------------~~-  378 (409)
T PLN00143        348 EDIEDDMEFCLKLAKEESLIILPGVTVGL------------------------------------------------KN-  378 (409)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCccccCC------------------------------------------------CC-
Confidence            12224566677888999999999998865                                                44 


Q ss_pred             CCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHHHhh
Q psy13922        469 GFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       469 ~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                               ++||+|+.++++++++++||+++++++.++
T Consensus       379 ---------~iRi~~~~~~~~l~~al~rl~~~l~~~~~~  408 (409)
T PLN00143        379 ---------WLRITFAVEQSSLEDGLGRLKSFCGRHAKK  408 (409)
T ss_pred             ---------eEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence                     999999988999999999999999877653

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=3.2e-47  Score=407.80  Aligned_cols=354  Identities=27%  Similarity=0.452  Sum_probs=284.5

Q ss_pred             CCC---CC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDP---RF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~---~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      |+|   .+  |+.+++++.+.+..     ..+|++..|.++||+++++++.++++..+++++|++|+|+++++.+++.++
T Consensus       154 G~p~~~~~~~p~~~~~~~~~~~~~-----~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l  228 (517)
T PRK13355        154 GNPAPFGFRTPDEVVYDMAQQLTD-----TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSAL  228 (517)
T ss_pred             cCCCcCCCCCCHHHHHHHHHHhhc-----CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHh
Confidence            667   57  88999998887754     235999999999999999999887666789999999999999999999999


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +++||    .|+++.|+|..|...++..|++++.++++++++|.+|++.+++.+..     ++++|+++|||||||.+++
T Consensus       229 ~~~Gd----~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-----~~k~i~i~nP~NPTG~v~~  299 (517)
T PRK13355        229 LDDGD----EVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS-----RTKAIVIINPNNPTGALYP  299 (517)
T ss_pred             CCCCC----EEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc-----CceEEEEECCCCCCCcCcC
Confidence            99998    99999999999999999999999999998877899999999998876     7999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      .+++++|+++|++||++||+||+|.+|.+++. .+.++.++.+       +..+++++||||.| |++|+|+||+++ .+
T Consensus       300 ~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~-~~~s~~~~~~-------~~~vi~~~S~SK~~-~~~G~RiG~~i~-~~  369 (517)
T PRK13355        300 REVLQQIVDIAREHQLIIFSDEIYDRLVMDGL-EHTSIASLAP-------DLFCVTFSGLSKSH-MIAGYRIGWMIL-SG  369 (517)
T ss_pred             HHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC-CcccHHHhCC-------CCeEEEEecchhhc-cCcccceEEEEe-eC
Confidence            99999999999999999999999999998642 4566666532       23478889999999 799999999972 22


Q ss_pred             CHH----HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        257 DPG----VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       257 ~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      +++    +++.+........+.+.+                                  +|.++..++..    ...+..
T Consensus       370 ~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------------~q~a~~~aL~~----~~~~~~  411 (517)
T PRK13355        370 NKRIAKDYIEGLNMLANMRLCSNVP----------------------------------AQSIVQTALGG----HQSVKD  411 (517)
T ss_pred             chhhHHHHHHHHHHHhcCcCCcChH----------------------------------HHHHHHHHhcC----CccHHH
Confidence            343    444454333333456666                                  44444444431    111233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      +   ++..+ .+.++++++.+.|+++||+++.+|+|+||+|++++..        ..++.++..++..+|+++||.++||
T Consensus       412 ~---~~~~~-~~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~--------~~~~~~~~~~~~~ll~~~gV~v~pg  479 (517)
T PRK13355        412 Y---LVPGG-RVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVK--------KFNIHDDEQFALDLLHDKKVLIVQG  479 (517)
T ss_pred             H---HHHHH-HHHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcc--------cCCCCCHHHHHHHHHHhCCEEEeCc
Confidence            3   44433 3445679999999999899999999999999877521        0123345667788999999999999


Q ss_pred             CCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHH
Q psy13922        413 AGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKA  492 (509)
Q Consensus       413 ~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~  492 (509)
                      ..|+.                                                .+.+        |||++|+.++++|++
T Consensus       480 ~~F~~------------------------------------------------~~~~--------~~Ris~~~~~~~l~~  503 (517)
T PRK13355        480 TGFNW------------------------------------------------DKPD--------HFRVVYLPRLEDLED  503 (517)
T ss_pred             chhCC------------------------------------------------CCcC--------EEEEEeCCCHHHHHH
Confidence            99875                                                3333        999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy13922        493 MLEKFREFHEEFL  505 (509)
Q Consensus       493 ~~~~l~~~~~~~~  505 (509)
                      +++||+++++.++
T Consensus       504 a~~rl~~~~~~~~  516 (517)
T PRK13355        504 AMDRLADFFSYYR  516 (517)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999997654

>KOG0259|consensus

Probab=100.00  E-value=1.2e-46  Score=362.91  Aligned_cols=351  Identities=24%  Similarity=0.375  Sum_probs=306.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .+...+|+..++++   +.+++|+|+.|....|+++|+|+++...-.+++++|++|+|+++||++++.+|.+||.    .
T Consensus        80 s~~a~~Av~~al~S---gk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~a----N  152 (447)
T KOG0259|consen   80 SQEAEQAVVDALRS---GKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGA----N  152 (447)
T ss_pred             CHHHHHHHHHHHhc---CCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCC----c
Confidence            35788899999998   8888899999999999999999988888789999999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |++|-|.|+.|.-.+...|.++..+++-++.+|.+|++.+|.++++     ++.+|+++||+||+|.+++.+-|++|++.
T Consensus       153 ILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DE-----NT~AivviNP~NPcGnVys~~HL~kiae~  227 (447)
T KOG0259|consen  153 ILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADE-----NTVAIVVINPNNPCGNVYSEDHLKKIAET  227 (447)
T ss_pred             eecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhcc-----CeeEEEEeCCCCCCcccccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998     89999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec-----CCHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN-----LDPGVK  261 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~-----~~~~~~  261 (509)
                      |+++++.||.||+|.+++|++ .++.++..+...+       -|++++|+||.|- .||||+||+++..     .+..+.
T Consensus       228 A~klgi~vIaDEVY~~~vfg~-~pfvpmg~fssiV-------PVitlggisKrW~-VPGWRlGWi~~hD~~gvf~~~~~~  298 (447)
T KOG0259|consen  228 AKKLGIMVIADEVYGHTVFGD-KPFVPMGKFSSIV-------PVITLGGISKRWI-VPGWRLGWIALHDPRGVFRDTKVV  298 (447)
T ss_pred             HHHhCCeEEehhhcceeecCC-CCccchhhccccC-------ceEeecccccccc-cCCceeeeEEEecccccccchHHH
Confidence            999999999999999999974 4788887765433       3999999999996 9999999998622     234555


Q ss_pred             HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        262 AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      +.+.+......+++++-                                  |.|+-.++.         ..-.+..+..+
T Consensus       299 q~~~~~~~~~~~p~Tii----------------------------------Q~AlP~IL~---------kTp~efF~k~~  335 (447)
T KOG0259|consen  299 QGIKNFLDIIPGPATII----------------------------------QGALPDILE---------KTPEEFFDKKL  335 (447)
T ss_pred             HHHHHHHhccCCccHhH----------------------------------HHHhHHHHH---------hChHHHHHHHH
Confidence            67777777777888884                                  444433333         11112267788


Q ss_pred             HHHHHHHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCC
Q psy13922        342 DSLKQRAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPG  420 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~  420 (509)
                      +.++.+.+..++.|.++|++. ...|+|.+|+|+++.+.-       ...+.++.+|+..+..+..+.+.||..|+.   
T Consensus       336 ~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~-------~~~~~dD~dFc~kL~~Eesv~~LPG~af~~---  405 (447)
T KOG0259|consen  336 SFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSL-------FPDIEDDVDFCQKLAREESVICLPGQAFGL---  405 (447)
T ss_pred             HHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhh-------hccccccHHHHHHHhhhcceEEeccccccC---
Confidence            999999999999999999999 568999999998876321       125668899999999999999999999998   


Q ss_pred             ccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHH
Q psy13922        421 TYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF  500 (509)
Q Consensus       421 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~  500 (509)
                                                                   ++          |+|++++.+.+.++++.+||+.+
T Consensus       406 ---------------------------------------------~n----------w~Ri~i~~~~~~leea~~Rik~F  430 (447)
T KOG0259|consen  406 ---------------------------------------------KN----------WLRIVITVEEEMLEEAFSRIKEF  430 (447)
T ss_pred             ---------------------------------------------CC----------eEEEEEccChHHHHHHHHHHHHH
Confidence                                                         67          99999999999999999999999


Q ss_pred             HHHHHh
Q psy13922        501 HEEFLA  506 (509)
Q Consensus       501 ~~~~~~  506 (509)
                      .++..+
T Consensus       431 c~RH~~  436 (447)
T KOG0259|consen  431 CDRHSK  436 (447)
T ss_pred             HHhhhh
Confidence            988653

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=2.3e-46  Score=392.82  Aligned_cols=366  Identities=25%  Similarity=0.407  Sum_probs=285.2

Q ss_pred             CCCC-----CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         21 FDDP-----RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        21 ~~~~-----~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      +|+|     ..|+.+.+++.+.+..   ....+|++..|.++||+++++++++++|+.+++++|++|+|+++++..++. 
T Consensus        39 ~G~p~~~~~~~p~~~~~a~~~~~~~---~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-  114 (433)
T PRK06855         39 IGDPIAKGEKIPDWMKEIVAELVMD---DKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-  114 (433)
T ss_pred             cCCCcccCCCCCHHHHHHHHHHhhc---CCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-
Confidence            5778     3477888898888765   344559999999999999999999999999999999999999999999985 


Q ss_pred             hhcCCCCCCCeEEEcCCCChhHHHHH-HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         96 LIEDVDGKKPGVLIPIPQYPLYSASL-AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        96 l~~~gd~~~~~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ++++||    .|+++.|+|..|.... ...|.+++.++++++.+|.+|++.|++.++..   ++++++++++||||||.+
T Consensus       115 l~~~Gd----~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~i~l~~P~NPTG~~  187 (433)
T PRK06855        115 LLRREA----RVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN---PSIAGILLINPDNPTGAV  187 (433)
T ss_pred             hcCCCC----eEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC---CCceEEEEECCCCCCCcC
Confidence            788888    9999999999987543 45699999999987677899999999998731   157899999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      +|.+++++|+++|++||++||+||+|.++.+++. .+.++.++.++       .++|+++||||.| |+||+|+||++..
T Consensus       188 ~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~-~~~sl~~~~~~-------~~~I~~~S~SK~~-~~pGlRiG~ii~p  258 (433)
T PRK06855        188 YPKEILREIVDIAREYDLFIICDEIYNNIVYNGK-KTVPLSEVIGD-------VPGIALKGISKEL-PWPGSRCGWIEVY  258 (433)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCCCHHHHcCc-------CCeEEEecCcccc-CCCcceEEEEEEe
Confidence            9999999999999999999999999999988642 45666665432       2379999999999 6999999999831


Q ss_pred             c--CCH---HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc
Q psy13922        255 N--LDP---GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS  329 (509)
Q Consensus       255 ~--~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  329 (509)
                      .  .++   .+++.+........+++.+                                  .|.++..+++     ++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~Q~a~~~~l~-----~~~  299 (433)
T PRK06855        259 NADKDEVFKKYINSILNAKMIEVCSTTL----------------------------------PQMAIPRIMS-----HPE  299 (433)
T ss_pred             CCchhhHHHHHHHHHHHhhccccCCChH----------------------------------HHHHHHHhhc-----CCc
Confidence            1  123   2334343333223345566                                  5666666655     233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCH---------------HHHHHHhhcCCCCc
Q psy13922        330 YEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA---------------KAIAKAKAEGKCPS  394 (509)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~---------------~~~~~~~~~g~~~~  394 (509)
                      ++.   +++++++.++++++.+.+.|++++++.+.+|+||||+|++++-..               .........+..++
T Consensus       300 ~~~---~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (433)
T PRK06855        300 YKN---YLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPD  376 (433)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCch
Confidence            444   488899999999999999999888888889999999998775210               00000000001246


Q ss_pred             HHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCC
Q psy13922        395 VLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVP  474 (509)
Q Consensus       395 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (509)
                      ++++..+++++||.+.||+.|+.                                                .+ .     
T Consensus       377 ~~~~~~l~~~~gV~v~PG~~F~~------------------------------------------------~~-~-----  402 (433)
T PRK06855        377 KRFVYYLLASTGICVVPLSSFCT------------------------------------------------EL-N-----  402 (433)
T ss_pred             HHHHHHHHHHcCEEEecCCcCCC------------------------------------------------CC-C-----
Confidence            67778889999999999999865                                                22 1     


Q ss_pred             CceeEEEEee-cChHHHHHHHHHHHHHHHHHH
Q psy13922        475 GTYHFRTTIL-PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       475 ~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~  505 (509)
                         ++||||+ .+.++|++++++|+++++++.
T Consensus       403 ---~~Rls~~~~~~~~i~~~~~~l~~~~~~~~  431 (433)
T PRK06855        403 ---GFRVTLLERDEEKFEWIYQTLAEKIEEYL  431 (433)
T ss_pred             ---ceEEEECCCcHHHHHHHHHHHHHHHHHHh
Confidence               5999999 699999999999999998654

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-46  Score=391.11  Aligned_cols=345  Identities=20%  Similarity=0.270  Sum_probs=283.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      |+.+.+++.+.+..   .....|++..|.++||+++++++.+.+|+++++ ++|++|+|+++++..++.+++++||    
T Consensus        55 ~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd----  127 (405)
T PRK06207         55 TPGAFELFSAGVER---GGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGD----  127 (405)
T ss_pred             CHHHHHHHHHHHhc---CCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCC----
Confidence            56788888888766   334459999999999999999999999988888 8999999999999999999999998    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecC---CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLD---ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~---~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                      +|+++.|+|..+...++..|++++.++++   ++.+|++|++.|++.+++     ++++|++++||||||.+++.+++++
T Consensus       128 ~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-----~~k~v~l~~P~NPTG~~~s~e~l~~  202 (405)
T PRK06207        128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-----GVRVFLFSNPNNPAGVVYSAEEIAQ  202 (405)
T ss_pred             EEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-----cCeEEEECCCCCCCCcCCCHHHHHH
Confidence            99999999999999999999999999986   334689999999999877     6899999999999999999999999


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |+++|+++|++||+||+|.++.+++. .+.++.++..      ...++|+++||||.| |+||+|+||++   +++++++
T Consensus       203 l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~~------~~~~vi~i~SfSK~~-~lpGlRiG~ii---~~~~l~~  271 (405)
T PRK06207        203 IAALARRYGATVIVDQLYSRLLYDGT-SYTHLRALPI------DPENVITIMGPSKTE-SLSGYRLGVAF---GSPAIID  271 (405)
T ss_pred             HHHHHHHcCCEEEEeccccccccCCC-CCCchhcCCC------CcCcEEEEecchhhc-cCcccceEEEE---cCHHHHH
Confidence            99999999999999999999988643 3344433211      123599999999999 79999999998   8999999


Q ss_pred             HHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        263 MLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       263 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      .+...... ..+.+.+                                  .|.++..+++.          ...++++.+
T Consensus       272 ~~~~~~~~~~~~~~~~----------------------------------~q~a~~~~l~~----------~~~~~~~~~  307 (405)
T PRK06207        272 RMEKLQAIVSLRAAGY----------------------------------SQAVLRTWFSE----------PDGWMKDRI  307 (405)
T ss_pred             HHHHHHhHhccCCCHH----------------------------------HHHHHHHHHhC----------cHHHHHHHH
Confidence            99887653 3344555                                  55555555431          012245566


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCc
Q psy13922        342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGT  421 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~  421 (509)
                      +.++++++.+.+.|++++++.+.+|++|+|+|++++  .         ...++.+++..+++++||.++||..|+.    
T Consensus       308 ~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~--~---------~~~~~~~~~~~l~~~~gV~v~pG~~F~~----  372 (405)
T PRK06207        308 ARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLP--R---------LAVSLHDFVKILRLQAGVIVTPGTEFSP----  372 (405)
T ss_pred             HHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCc--c---------cCCCHHHHHHHHHHhcCEEEeCchHhCC----
Confidence            677788899999998887888888999999998775  1         0113456666777789999999998875    


Q ss_pred             cccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHH
Q psy13922        422 YHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       422 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                                                                  .+.+        +|||+|+.+.++|+++++||++++
T Consensus       373 --------------------------------------------~~~~--------~~Ris~~~~~~~l~~al~rl~~~l  400 (405)
T PRK06207        373 --------------------------------------------HTAD--------SIRLNFSQDHAAAVAAAERIAQLI  400 (405)
T ss_pred             --------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHHHHHH
Confidence                                                        3333        999999998999999999999999


Q ss_pred             HHHH
Q psy13922        502 EEFL  505 (509)
Q Consensus       502 ~~~~  505 (509)
                      ++++
T Consensus       401 ~~~~  404 (405)
T PRK06207        401 ERYR  404 (405)
T ss_pred             HHhh
Confidence            7654

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-46  Score=366.15  Aligned_cols=350  Identities=23%  Similarity=0.375  Sum_probs=306.8

Q ss_pred             CCCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         20 LFDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        20 ~~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      |+.+=+|  ||.|++++++.+..   +-++ |+  .+..++.+++++|+.++|++.++++-|++++|..-++..+++.|+
T Consensus        31 WVADMDf~~pp~i~~Al~~rvdh---GvfG-Y~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T  104 (388)
T COG1168          31 WVADMDFPTPPEIIEALRERVDH---GVFG-YP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT  104 (388)
T ss_pred             eeecccCCCCHHHHHHHHHHHhc---CCCC-CC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC
Confidence            3455565  79999999999998   6666 87  455889999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC-CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ++||    .|++..|.|+++....+.+|.+++..|+. +++.|.+|++.||+.+.+.    +++++++||||||||.+.+
T Consensus       105 ~~gd----~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~----~vkl~iLCnPHNP~Grvwt  176 (388)
T COG1168         105 KPGD----GVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDE----RVKLFILCNPHNPTGRVWT  176 (388)
T ss_pred             cCCC----eeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcC----CccEEEEeCCCCCCCcccc
Confidence            9999    99999999999999999999999999987 5578899999999999985    7899999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      +++|++|.++|++||+.||+||+|.++++.+. ++.++.++.+...     .++|++.|.||+|+ ++|+..+++++  .
T Consensus       177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a-----~~~it~~saSKtFN-laGL~~a~~Ii--~  247 (388)
T COG1168         177 KEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFA-----DNSITLTSASKTFN-LAGLKCAYIII--S  247 (388)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhh-----cceEEEeecccccc-chhhhheeEEe--c
Confidence            99999999999999999999999999999864 6777776655542     34888999999995 99999999987  8


Q ss_pred             CHHHHHHHHHhhh--cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        257 DPGVKAMLHKSIS--AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       257 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                      ++++++++.+...  ...++|.+                                  +..|..++          |.+..
T Consensus       248 n~~lr~~~~~~l~~~~~~~~n~l----------------------------------g~~A~~aA----------Y~~G~  283 (388)
T COG1168         248 NRELRAKFLKRLKRNGLHGPSAL----------------------------------GIIATEAA----------YNQGE  283 (388)
T ss_pred             CHHHHHHHHHHHHHhcCCCCchH----------------------------------HHHHHHHH----------HHhch
Confidence            8888776654433  56678888                                  55555555          55666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      .|++++++.++.+++++.+.+++ +|++++..|+|.+.+|++++          ++|+.+ +...+.++++.+|.+-+|.
T Consensus       284 ~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r----------~l~l~d-~~l~~~ll~~akVal~~G~  352 (388)
T COG1168         284 PWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCR----------ELGLDD-SELAEFLLEEAKVALSPGS  352 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeecc----------ccCCCh-HHHHHHHHHhhcEeccCCC
Confidence            78999999999999999999999 79999999999999999997          345543 3447899999999999999


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAM  493 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~  493 (509)
                      .|+.                                                .|+|        ++|++++++.+.++++
T Consensus       353 ~FG~------------------------------------------------~g~g--------f~RlN~acpr~~L~ea  376 (388)
T COG1168         353 TFGE------------------------------------------------EGSG--------FVRLNFACPRAILEEA  376 (388)
T ss_pred             ccCc------------------------------------------------CCCc--------eEEEecCCCHHHHHHH
Confidence            9999                                                6666        9999999999999999


Q ss_pred             HHHHHHHHHH
Q psy13922        494 LEKFREFHEE  503 (509)
Q Consensus       494 ~~~l~~~~~~  503 (509)
                      ++||+.++++
T Consensus       377 l~ri~~al~~  386 (388)
T COG1168         377 LERLKRALKK  386 (388)
T ss_pred             HHHHHHHHhc
Confidence            9999988864

>KOG0257|consensus

Probab=100.00  E-value=7e-48  Score=378.08  Aligned_cols=365  Identities=23%  Similarity=0.320  Sum_probs=298.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|++  |+.+.+++.+++..   ...++|.+..|.++|++++++.++..+|....++ +|++|.|+.++|..++..+++
T Consensus        39 Gfp~~~~P~fv~ea~~~~~~~---~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~  115 (420)
T KOG0257|consen   39 GFPDFPPPKFVTEAAKNAAKE---PSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN  115 (420)
T ss_pred             CCCCCCCcHHHHHHHHHHhcc---chhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC
Confidence            66666  66899999999988   4678899999999999999999999888776666 699999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC------CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD------ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~------~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      +||    +|++.+|.|..|....+.+|...+.++..      -..+|.+|.+.|+..+.+     ++|+|++|+||||||
T Consensus       116 ~GD----eVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~-----kTk~Ii~ntPhNPtG  186 (420)
T KOG0257|consen  116 PGD----EVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE-----KTKAIILNTPHNPTG  186 (420)
T ss_pred             CCC----EEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccC-----CccEEEEeCCCCCcC
Confidence            999    99999999999999999999999999987      456899999999999999     899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .++|+++|++|+++|++||+++|+||+|..+.+++. ++..+.++ |++.+     ++|.++|+||+| |++|||+||++
T Consensus       187 kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~-~h~r~asl-Pgm~e-----rtitvgS~gKtf-~~TGWrlGW~i  258 (420)
T KOG0257|consen  187 KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGN-KHIRIASL-PGMYE-----RTITVGSFGKTF-GVTGWRLGWAI  258 (420)
T ss_pred             cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCC-cceeeecC-Cchhh-----eEEEecccccee-eeeeeeeeeee
Confidence            999999999999999999999999999999999854 46666666 66643     499999999999 79999999998


Q ss_pred             eecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCC-CCCch
Q psy13922        253 VINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQP-GEPSY  330 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~~~~~  330 (509)
                         +++.+........+ .....+++.                                  |.|...+++..+. .+   
T Consensus       259 ---gp~~L~~~~~~vh~~~~~~~~Tp~----------------------------------q~A~a~a~~~~~~~~~---  298 (420)
T KOG0257|consen  259 ---GPKHLYSALFPVHQNFVFTCPTPI----------------------------------QEASAAAFALELACLQ---  298 (420)
T ss_pred             ---chHHhhhhHHHHhhccccccCcHH----------------------------------HHHHHHHHhhhhhccC---
Confidence               78888888887766 233444441                                  2222222211100 00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      .....+.+.+.+.++++++.|.+.|.++ |++++.|+|++|+|+++.++..+.........+++..++..++++.|+.+.
T Consensus       299 p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~I  377 (420)
T KOG0257|consen  299 PGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVI  377 (420)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEe
Confidence            0111236779999999999999999999 999999999999999998544221111222344667778899999999999


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKL  490 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i  490 (509)
                      |++.|+..   .++|.+                                        .+        ++|++++.+.+.+
T Consensus       378 P~saF~s~---~~~~~~----------------------------------------~~--------~~r~~~~k~~~~L  406 (420)
T KOG0257|consen  378 PPSAFGSR---EHIKVA----------------------------------------ER--------LVRFCFCKADETL  406 (420)
T ss_pred             CchhcCCc---hhhHHH----------------------------------------HH--------HHHHHHHhhHHHH
Confidence            99999983   122211                                        12        8999999999999


Q ss_pred             HHHHHHHH
Q psy13922        491 KAMLEKFR  498 (509)
Q Consensus       491 ~~~~~~l~  498 (509)
                      ++++++|+
T Consensus       407 ~~a~e~l~  414 (420)
T KOG0257|consen  407 RKAIERLK  414 (420)
T ss_pred             HHHHHHHh
Confidence            99999998

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=2.7e-46  Score=390.56  Aligned_cols=374  Identities=21%  Similarity=0.348  Sum_probs=296.4

Q ss_pred             CchHHHHHHHHhhcCCCCC----CCCC-----C-CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhc--
Q psy13922          3 PVFSLSLQVLALVSLPQLF----DDPR-----F-PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD--   70 (509)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~----~~~~-----~-p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~--   70 (509)
                      +....++.++...+.++.+    |.|.     + |+.+.+++.+.+..   ....+|+++.|.++||+++++++++++  
T Consensus        18 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~---~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~   94 (412)
T PTZ00433         18 PLRTVTDNAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS---QECNGYPPTVGSPEAREAVATYWRNSFVH   94 (412)
T ss_pred             cHHHHHHhhccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc---CCCCCCCCCCCcHHHHHHHHHHHHhhccc
Confidence            3444555555443444443    5553     3 56788888887775   345669999999999999999998754  


Q ss_pred             ----CCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHH
Q psy13922         71 ----GQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL  146 (509)
Q Consensus        71 ----g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L  146 (509)
                          |..+++++|++|+|+++++.+++..++++||    +|+++.|+|..+...++..|++++.++.+++.+|++|++.|
T Consensus        95 ~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l  170 (412)
T PTZ00433         95 KESLKSTIKKDNVVLCSGVSHAILMALTALCDEGD----NILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEI  170 (412)
T ss_pred             cccccCCCChhhEEEeCChHHHHHHHHHHhcCCCC----EEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHH
Confidence                4668899999999999999999999999998    99999999999999999999999999998766789999999


Q ss_pred             HHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCC
Q psy13922        147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYK  226 (509)
Q Consensus       147 ~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (509)
                      ++.+.+     ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.+|.+++. .+.++.++..       
T Consensus       171 ~~~~~~-----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-------  237 (412)
T PTZ00433        171 RRLVDD-----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA-TFTSVADFDT-------  237 (412)
T ss_pred             HHHhcc-----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC-CccchhhccC-------
Confidence            988876     799999999999999999999999999999999999999999999988642 3445544422       


Q ss_pred             CceeEEEEecccccCCCCCCeeEEEeeecC---CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhh
Q psy13922        227 SMELASFMSCSKGYMGECGLRGGYSEVINL---DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL  303 (509)
Q Consensus       227 ~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (509)
                      ..++|+++||||.| |+||+|+||+++.+.   .+++++.+.+......+++.+                          
T Consensus       238 ~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  290 (412)
T PTZ00433        238 TVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSV--------------------------  290 (412)
T ss_pred             CCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChH--------------------------
Confidence            12378999999999 799999999982001   246778777765434466776                          


Q ss_pred             hcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHH
Q psy13922        304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAI  383 (509)
Q Consensus       304 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~  383 (509)
                              .|.++..++..         ....++++.++.++++++.+.+.|++..++.+..|++|+|+|++++...   
T Consensus       291 --------~q~a~~~~l~~---------~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~---  350 (412)
T PTZ00433        291 --------VQAALGEALLN---------TPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK---  350 (412)
T ss_pred             --------HHHHHHHHHhc---------CcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhh---
Confidence                    55555544431         1223478889999999999999999866788889999999997764110   


Q ss_pred             HHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhccccc
Q psy13922        384 AKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGIC  463 (509)
Q Consensus       384 ~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (509)
                          ..++.++.+++..+++++||.++||..|+.                                              
T Consensus       351 ----~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~----------------------------------------------  380 (412)
T PTZ00433        351 ----FRDIKSDVEFYEKLLEEENVQVLPGEIFHM----------------------------------------------  380 (412)
T ss_pred             ----cCCCCCHHHHHHHHHHhcCEEEeCccccCC----------------------------------------------
Confidence                001224566677778789999999998865                                              


Q ss_pred             ccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHHH
Q psy13922        464 IVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       464 ~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~  505 (509)
                        ++          ++||+++.++++|++++++|.+++++++
T Consensus       381 --~~----------~iRis~~~~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        381 --PG----------FTRLTISRPVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             --CC----------eEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence              44          9999999889999999999999998765

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.7e-46  Score=386.17  Aligned_cols=358  Identities=23%  Similarity=0.374  Sum_probs=290.2

Q ss_pred             HHHHHHHhhc-CCCCC----CCCCCC--HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE
Q psy13922          7 LSLQVLALVS-LPQLF----DDPRFP--DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV   79 (509)
Q Consensus         7 ~~~~~~~~~~-~~~~~----~~~~~p--~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i   79 (509)
                      .++.++.++. .+..+    |.|.++  +.+++++.+.+..    ...+|+++.|.+++|+++++++.+++|+.+++++|
T Consensus        17 ~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i   92 (384)
T PRK06348         17 IMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKK----GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEI   92 (384)
T ss_pred             HHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhE
Confidence            4566666653 23433    667763  4566655554443    24559999999999999999999889999999999


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCc
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNP  159 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~  159 (509)
                      ++|+|+++++..++.+++++||    .|+++.|+|.++...++..|++++.++..++.+|.+|++.|++.++.     ++
T Consensus        93 ~it~G~~~al~~~~~~~~~~gd----~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~  163 (384)
T PRK06348         93 MATVGACHGMYLALQSILDPGD----EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS-----KT  163 (384)
T ss_pred             EEcCChHHHHHHHHHHhcCCCC----EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc-----Cc
Confidence            9999999999999999999998    99999999999999999999999999986556788999999998876     78


Q ss_pred             eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      ++|++++||||||.++|.+++++|+++|++++++||+||+|.++.+++  .+.++.++.. .     ..++|+++||||.
T Consensus       164 ~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~-----~~~vi~~~SfSK~  235 (384)
T PRK06348        164 KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE--DFVPMATLAG-M-----PERTITFGSFSKD  235 (384)
T ss_pred             cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC--CccchhhcCC-C-----cCcEEEEecchhc
Confidence            999999999999999999999999999999999999999999998853  3344444321 1     2359999999999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      + |+||+|+||++   +++++++.+..... ...+++.+                                  .|.++..
T Consensus       236 ~-~l~GlRiG~~v---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~  277 (384)
T PRK06348        236 F-AMTGWRIGYVI---APDYIIETAKIINEGICFSAPTI----------------------------------SQRAAIY  277 (384)
T ss_pred             c-CCccccceeee---cCHHHHHHHHHHHHhccCCCCHH----------------------------------HHHHHHH
Confidence            9 79999999998   78999999987765 33456666                                  5555544


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                      ++.          ...++++++++.++++++.+.+.|+.++++.+.+|+||+|+|++++.+          ++ ++.+++
T Consensus       278 ~l~----------~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~----------~~-~~~~l~  336 (384)
T PRK06348        278 ALK----------HRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKT----------GL-SSVEFC  336 (384)
T ss_pred             HHh----------CcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccC----------CC-CHHHHH
Confidence            443          122347788899999999999999998788888999999999877411          12 355666


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ..+++++||.+.||+.|+.                                                .+.+        +
T Consensus       337 ~~l~~~~gv~v~pg~~f~~------------------------------------------------~~~~--------~  360 (384)
T PRK06348        337 EKLLKEAHVLVIPGKAFGE------------------------------------------------SGEG--------Y  360 (384)
T ss_pred             HHHHHhCCEEEcCchhhcc------------------------------------------------CCCC--------e
Confidence            7777889999999998875                                                3333        9


Q ss_pred             EEEEeecChHHHHHHHHHHHHH
Q psy13922        479 FRTTILPQPEKLKAMLEKFREF  500 (509)
Q Consensus       479 ~Rls~~~~~~~i~~~~~~l~~~  500 (509)
                      +|++++.+++++++++++|+++
T Consensus       361 iRi~~~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        361 IRLACTVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             EEEEecCCHHHHHHHHHHHHhh
Confidence            9999999999999999999764

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=5e-46  Score=387.98  Aligned_cols=356  Identities=23%  Similarity=0.385  Sum_probs=290.8

Q ss_pred             CCCC----C--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         22 DDPR----F--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~----~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      |+|.    +  |+.+++++.+++.+   ....+|++..|.+++|++++++++..+|+.+++++|++|+|+++++..++.+
T Consensus        39 G~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~  115 (409)
T PLN02656         39 GDPTAYSCFHTTHVAQEAVVDALQS---NKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSM  115 (409)
T ss_pred             CCCCcCCCCCCCHHHHHHHHHHHhc---CCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHH
Confidence            6775    4  67899999888887   4555699999999999999999999889889999999999999999999999


Q ss_pred             hhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922         96 LIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus        96 l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      ++++||    +|+++.|+|..+...++..|++++.++++++.+|.+|++.+++.++.     +++++++++||||||.++
T Consensus       116 l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~P~NPtG~~~  186 (409)
T PLN02656        116 LARPGA----NILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ-----NTVALVIINPGNPCGNVY  186 (409)
T ss_pred             HhCCCC----eEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc-----CceEEEEECCCCCCCCCC
Confidence            999998    99999999999998888999999999987666789999999988876     789999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      +.+++++|+++|+++|++||+||+|.+|.+++. .+.++..+..       ..++|+++||||.| ++||+|+||++...
T Consensus       187 s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-------~~~vi~~~SfSK~f-~~pGlRiG~~i~~~  257 (409)
T PLN02656        187 SYQHLKKIAETAEKLKILVIADEVYGHLAFGSN-PFVPMGVFGS-------IVPVLTLGSLSKRW-IVPGWRLGWFVTTD  257 (409)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CcccHHHhcc-------cCcEEEEcccchhc-cCcceeEEEEEEeC
Confidence            999999999999999999999999999998643 3344444321       23599999999999 79999999998200


Q ss_pred             C-----CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        256 L-----DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       256 ~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      .     ++++++++.+......+++.+                                  .|.++..+++.        
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------------------------~q~a~~~~l~~--------  295 (409)
T PLN02656        258 PSGSFRDPKIVERIKKYFDILGGPATF----------------------------------IQAAVPTILEQ--------  295 (409)
T ss_pred             cccccccHHHHHHHHHHHhhhcCCCHH----------------------------------HHHHHHHHHhc--------
Confidence            0     368888888766544456666                                  56665555541        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                       ....++++.++.++++++.+.+.|+.++++. +..|+||+|+|++++.+.       ..+..++.+++..+++++||.+
T Consensus       296 -~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~-------~~~~~~~~~~~~~~l~~~gV~v  367 (409)
T PLN02656        296 -TDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSL-------LEDISDDIDFCFKLAREESVII  367 (409)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhh-------cCCCCCHHHHHHHHHHhCCEEE
Confidence             1123478888899999999999999886554 357999999998774210       0122234456778889999999


Q ss_pred             ecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHH
Q psy13922        410 VPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEK  489 (509)
Q Consensus       410 ~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~  489 (509)
                      +||+.|+.                                                ++          +|||+|+.++++
T Consensus       368 ~pg~~fg~------------------------------------------------~~----------~iRi~~~~~~e~  389 (409)
T PLN02656        368 LPGTAVGL------------------------------------------------KN----------WLRITFAADPSS  389 (409)
T ss_pred             ecchhcCC------------------------------------------------CC----------eEEEEeCCCHHH
Confidence            99998865                                                44          999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy13922        490 LKAMLEKFREFHEEFLA  506 (509)
Q Consensus       490 i~~~~~~l~~~~~~~~~  506 (509)
                      |+++++||++++.++..
T Consensus       390 l~eal~rl~~~~~~~~~  406 (409)
T PLN02656        390 LEEALGRIKSFYLRHSK  406 (409)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999986553

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.2e-46  Score=386.94  Aligned_cols=342  Identities=20%  Similarity=0.324  Sum_probs=282.9

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|++  |+.+.+++.+.+..   .....|+ +.|.++||+++++++++++|+.+++ ++|++|+|+++++..++.++++
T Consensus        40 g~p~~~~~~~~~~~~~~~~~~---~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~  115 (399)
T PRK07681         40 GNPDMPPADFVREEMVHTANQ---KESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYAN  115 (399)
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---cccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCC
Confidence            56654  56788888877765   2223365 4799999999999999999999998 8999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|..|...++..|++++.++++++++|.+|++.+++.+.+     ++++|++++||||||.++|++
T Consensus       116 ~Gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~k~v~l~~P~NPTG~~~s~~  186 (399)
T PRK07681        116 PGD----IILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD-----KAKMMILNFPGNPVPAMAHED  186 (399)
T ss_pred             CCC----EEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc-----cceEEEEeCCCCCcCcCCCHH
Confidence            998    99999999999999999999999999998777789999999988866     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. ...++.++...      ..++|+++||||.| |++|+|+||++   +++
T Consensus       187 ~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~------~~~~i~~~S~SK~~-~~~GlRiG~~i---~~~  255 (399)
T PRK07681        187 FFKEVIAFAKKHNIIVVHDFAYAEFYFDGN-KPISFLSVPGA------KEVGVEINSLSKSY-SLAGSRIGYMI---GNE  255 (399)
T ss_pred             HHHHHHHHHHHcCeEEEEeccchhheeCCC-CCCChhhCCCC------cccEEEEeeccccc-CCccceeEEEe---cCH
Confidence            999999999999999999999999988642 34454443211      23489999999999 79999999998   799


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+.+... ...+++.+                                  .|.++..++..          ..+++
T Consensus       256 ~l~~~~~~~~~~~~~~~s~~----------------------------------~q~~~~~~l~~----------~~~~~  291 (399)
T PRK07681        256 EIVRALTQFKSNTDYGVFLP----------------------------------IQKAACAALRN----------GAAFC  291 (399)
T ss_pred             HHHHHHHHHHhhcccCCCHH----------------------------------HHHHHHHHHhC----------cHHHH
Confidence            99999988765 34456666                                  45555555441          11346


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|++. |+++..|.+++|+|++++.           ++ ++.+++..+++++||.++||..|+.
T Consensus       292 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~-----------~~-~~~~~~~~l~~~~gv~v~pg~~f~~  358 (399)
T PRK07681        292 EKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPK-----------GW-TSLSFAYALMDRANVVVTPGHAFGP  358 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCC-----------CC-CHHHHHHHHHHhCCEEEeCChhhCc
Confidence            778889999999999999998 8888788999999987751           22 3556677888889999999998875


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++.+++++++++++|
T Consensus       359 ------------------------------------------------~~~~--------~iRis~~~~~~~~~~~l~~l  382 (399)
T PRK07681        359 ------------------------------------------------HGEG--------FVRIALVQDEEVLQQAVENI  382 (399)
T ss_pred             ------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHH
Confidence                                                            3333        99999998899999999999


Q ss_pred             HHH
Q psy13922        498 REF  500 (509)
Q Consensus       498 ~~~  500 (509)
                      ++.
T Consensus       383 ~~~  385 (399)
T PRK07681        383 RNS  385 (399)
T ss_pred             HHh
Confidence            983

>PLN02368 alanine transaminase

Probab=100.00  E-value=9.6e-46  Score=383.20  Aligned_cols=341  Identities=48%  Similarity=0.854  Sum_probs=279.0

Q ss_pred             hHHHHHHHHhhcCCCCCCCCC----CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEE
Q psy13922          5 FSLSLQVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI   80 (509)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~----~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~   80 (509)
                      ..+.|+++..+..|..++.|.    +|+..+.+....+... .....+|+++.|.++||+++++++++++|+.+++++|+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~-~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~  134 (407)
T PLN02368         56 LTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLT-SGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIF  134 (407)
T ss_pred             chHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEE
Confidence            347788888888888887775    4776666655554321 13455699999999999999999999889889999999


Q ss_pred             EeCCHHHHHHHHHHHhh-cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CC
Q psy13922         81 LSAGASDGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CN  158 (509)
Q Consensus        81 ~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~  158 (509)
                      +|+|+++++..++.+++ ++||    .|+++.|+|..|...++..|++++.++++++.+|++|++.|++.++....+ .+
T Consensus       135 it~Ga~~al~~~~~~l~~~pGd----~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~  210 (407)
T PLN02368        135 LTDGASKGVMQILNAVIRGEKD----GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGIT  210 (407)
T ss_pred             EcccHHHHHHHHHHHHcCCCCC----EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCC
Confidence            99999999999999997 6888    999999999999999999999999999987778999999999999753211 25


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCC-CCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEP-YKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~S  237 (509)
                      +++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..++.++.++..++... .+..++|+++|||
T Consensus       211 ~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfS  290 (407)
T PLN02368        211 VRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVS  290 (407)
T ss_pred             eEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCC
Confidence            899999999999999999999999999999999999999999999987543456766654443321 1134699999999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      |.|+|++|+|+||++..++++++++.+.+.....++++.+                                  .|.++.
T Consensus       291 K~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~----------------------------------~Q~aa~  336 (407)
T PLN02368        291 KGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVS----------------------------------GQIFMG  336 (407)
T ss_pred             cccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcH----------------------------------HHHHHH
Confidence            9983499999999973224889999998875444567777                                  677766


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIA  384 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~  384 (509)
                      .++++.+.++..|..+.++++.+++.+++|++.+.+.|+++||+.+..|+|+||+|+++.+|.+++.
T Consensus       337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~lp~~~~~  403 (407)
T PLN02368        337 LMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPPKAIE  403 (407)
T ss_pred             HHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCCCHHHHH
Confidence            6666444344556667666778999999999999999999999999999999999999999987654

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1e-45  Score=385.18  Aligned_cols=355  Identities=18%  Similarity=0.308  Sum_probs=283.1

Q ss_pred             CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.|.  .|+.+++++.+.+..   .....|+++.|.++||+++|+++++++|+.++++ +|++|+|+++++.++++++++
T Consensus        41 g~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~  117 (403)
T PRK08636         41 GNPDGPTPQHIIDKLCESAQK---PKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITN  117 (403)
T ss_pred             cCCCCCCCHHHHHHHHHHhcC---CccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCC
Confidence            4555  466777777666544   3345699999999999999999999999999998 799999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc--cCCceEEEEeCCCCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK--HCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~--~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +||    .|++++|+|..+...++..|++++.++++.+.+|++|++.+.+.+++.-+  ..+++++++++||||||.++|
T Consensus       118 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s  193 (403)
T PRK08636        118 PGD----VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVE  193 (403)
T ss_pred             CCC----EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCC
Confidence            998    99999999999999999999999999986555689998866444433211  136889999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      .+++++|+++|++|+++||+||+|.++.+++ ....++.++.. .     ..++|+++||||.| |+||+|+||++   +
T Consensus       194 ~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~-~~~~~~~~~~~-~-----~~~~i~~~S~SK~~-~~~GlRiG~iv---~  262 (403)
T PRK08636        194 KSFYERLVALAKKERFYIISDIAYADITFDG-YKTPSILEVEG-A-----KDVAVESYTLSKSY-NMAGWRVGFVV---G  262 (403)
T ss_pred             HHHHHHHHHHHHHcCcEEEEeccchhhccCC-CCCCChhcCCC-c-----cccEEEEEeccccc-CCccceeeeee---C
Confidence            9999999999999999999999999998863 23445554321 1     12478899999999 79999999998   8


Q ss_pred             CHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        257 DPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++++.+.+.... ..+.+.+                                  .|.++..++.          ...+
T Consensus       263 ~~~li~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~~~----------~~~~  298 (403)
T PRK08636        263 NKKLVGALKKIKSWLDYGMFTP----------------------------------IQVAATIALD----------GDQS  298 (403)
T ss_pred             CHHHHHHHHHHHHHhcccCChH----------------------------------HHHHHHHHHh----------CcHH
Confidence            99999999887652 3444455                                  3333333332          1123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      +++++++.++++++.+.+.|++. ++.+..|.+|+|+|++++-..         ...++.+++..+++++||.+.||..|
T Consensus       299 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~---------~~~~~~~l~~~ll~~~gV~v~pg~~f  368 (403)
T PRK08636        299 CVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIPEPA---------RHLGSLEFSKQLLTEAKVAVSPGIGF  368 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECCCcc---------CCCCHHHHHHHHHHhCCEEEecchhh
Confidence            57889999999999999999998 788888999999998775110         01124666677888899999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        +|||+++.++++++++++
T Consensus       369 ~~------------------------------------------------~~~~--------~iRi~~~~~~~~l~~~~~  392 (403)
T PRK08636        369 GE------------------------------------------------YGDE--------YVRIALIENENRIRQAAR  392 (403)
T ss_pred             Cc------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHH
Confidence            76                                                3333        999999999999999999


Q ss_pred             HHHHHHHHH
Q psy13922        496 KFREFHEEF  504 (509)
Q Consensus       496 ~l~~~~~~~  504 (509)
                      +|+++++++
T Consensus       393 rl~~~l~~~  401 (403)
T PRK08636        393 NIKKFLKEL  401 (403)
T ss_pred             HHHHHHHhh
Confidence            999999763

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.2e-45  Score=383.84  Aligned_cols=351  Identities=19%  Similarity=0.308  Sum_probs=279.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCCC-cEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQ-DVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~   97 (509)
                      |.|++  |+.+.+++.+.+..     ..+|++..|.++||+++++++++++|++ ++++ +|++|+|+++++..++++++
T Consensus        37 ~~p~~~~~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~  111 (396)
T PRK09147         37 GEPKHPTPAFIKDALAANLDG-----LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI  111 (396)
T ss_pred             CCCCCCCCHHHHHHHHHHhhh-----hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc
Confidence            56665  56788887776643     4559999999999999999999999988 8885 89999999999999999999


Q ss_pred             cC---CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         98 ED---VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        98 ~~---gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ++   ||    .|+++.|+|..+...++..|.+++.+|++++.+|.+|++.+++.+.+     ++++|+++|||||||.+
T Consensus       112 ~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~nP~NPTG~~  182 (396)
T PRK09147        112 DRDGPGP----LVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA-----RTQLLFVCSPGNPTGAV  182 (396)
T ss_pred             CCCCCCC----EEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh-----ccEEEEEcCCCCCcCcc
Confidence            98   66    99999999999999999999999999998777899999999988866     79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      +|.+++++|+++|++|+++||+||+|.++.+++.....+........+.. ...++|+++||||.| |++|+|+||++  
T Consensus       183 ~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~-~~~GlRiG~~~--  258 (396)
T PRK09147        183 LPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRD-DFKRLVVFHSLSKRS-NVPGLRSGFVA--  258 (396)
T ss_pred             CCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCcc-ccccEEEEecccccc-CCccceeeeec--
Confidence            99999999999999999999999999999886421222222211111110 124699999999999 79999999998  


Q ss_pred             cCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHH
Q psy13922        255 NLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  333 (509)
                       +++++++.+.+... ...+++.+                                  .|.+....+.        .+  
T Consensus       259 -~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~q~a~~~~~~--------~~--  293 (396)
T PRK09147        259 -GDAALLKKFLLYRTYHGCAMPPA----------------------------------VQAASIAAWN--------DE--  293 (396)
T ss_pred             -CCHHHHHHHHHHhhhcccCCCHH----------------------------------HHHHHHHHhc--------ch--
Confidence             89999999987665 23455555                                  3433222222        02  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        334 SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                       +++++.++.++++++.+.+.|++.  +.+..|++|+|+|++++.              ++.+++..+++++||.+.||.
T Consensus       294 -~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~~--------------~~~~~~~~ll~~~gv~v~pg~  356 (396)
T PRK09147        294 -AHVRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVPG--------------DDTEFARRLYADYNVTVLPGS  356 (396)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECCC--------------CHHHHHHHHHHhCCEEEeCCc
Confidence             237788899999999999999874  566678999999987751              245566778888999999999


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAM  493 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~  493 (509)
                      .|+..                                                .  ++..++..++||+|+.++++++++
T Consensus       357 ~f~~~------------------------------------------------~--~~~~~~~~~iRi~~~~~~~~l~~~  386 (396)
T PRK09147        357 YLARE------------------------------------------------A--HGVNPGAGRVRIALVAPLAECVEA  386 (396)
T ss_pred             ccccc------------------------------------------------c--cCCCCCCCeEEEEecCCHHHHHHH
Confidence            88751                                                1  001122339999999989999999


Q ss_pred             HHHHHHHHH
Q psy13922        494 LEKFREFHE  502 (509)
Q Consensus       494 ~~~l~~~~~  502 (509)
                      +++|+++++
T Consensus       387 l~rl~~~~~  395 (396)
T PRK09147        387 AERIVDFCR  395 (396)
T ss_pred             HHHHHHHhc
Confidence            999998763

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=1.2e-45  Score=383.13  Aligned_cols=342  Identities=20%  Similarity=0.320  Sum_probs=280.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ++|.+  |+.+.+++.+.+..   ....+|++..|.++||+++++++.+++|.+++++ +|++|+|+++++..++..+++
T Consensus        40 ~~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~  116 (389)
T PRK08068         40 GNPDQPTPEHIVEALQEAAEN---PANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMN  116 (389)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCC
Confidence            55665  46788888888775   3455699999999999999999998889888998 899999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|..|...++..|++++.+|++++.+|.+|++.+++.+.+     ++++|++++||||||.++|.+
T Consensus       117 ~gd----~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~P~NPTG~~~s~~  187 (389)
T PRK08068        117 PGD----TILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE-----KAKLMYLNYPNNPTGAVATKA  187 (389)
T ss_pred             CCC----EEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc-----cceEEEEECCCCCCCCcCCHH
Confidence            998    99999999999999999999999999998766788999999998876     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. ...++.... +     ...++++++||||.| |++|+|+||++   +++
T Consensus       188 ~~~~l~~la~~~~~~ii~Deay~~~~~~~~-~~~s~~~~~-~-----~~~~~i~~~S~SK~~-g~~GlRiG~~~---~~~  256 (389)
T PRK08068        188 FFEETVAFAKKHNIGVVHDFAYGAIGFDGQ-KPVSFLQTP-G-----AKDVGIELYTLSKTF-NMAGWRVAFAV---GNE  256 (389)
T ss_pred             HHHHHHHHHHHcCeEEEEehhhhhhccCCC-CCcChhhCC-C-----ccCCEEEEecchhcc-CCccceeEeEe---cCH
Confidence            999999999999999999999999887642 223333221 1     123489999999999 79999999998   899


Q ss_pred             HHHHHHHHhhhcc-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch-hhcccCCCCCCCCchHHHHHH
Q psy13922        259 GVKAMLHKSISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV-MDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++.+.+....+ .+.+..                                  .|.+ ...+.+           ..++
T Consensus       257 ~l~~~l~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~-----------~~~~  291 (389)
T PRK08068        257 SVIEAINLLQDHLFVSLFGA----------------------------------IQDAAIEALLS-----------DQSC  291 (389)
T ss_pred             HHHHHHHHHHhhccCCCChH----------------------------------HHHHHHHHHhC-----------cHHH
Confidence            9999998876533 222222                                  2333 233222           1145


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ++++++.++++++.+.+.|+++ |+.+.+|.|++|+|++++-           ++ ++.++...+++++||.++||..|+
T Consensus       292 ~~~~~~~~~~~r~~~~~~L~~~-g~~~~~~~g~~~~~v~~~~-----------~~-~~~~~~~~l~~~~gi~v~pg~~f~  358 (389)
T PRK08068        292 VAELVARYESRRNAFISACREI-GWEVDAPKGSFFAWMPVPK-----------GY-TSEQFADLLLEKAHVAVAPGNGFG  358 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCC-----------CC-CHHHHHHHHHHhCCEEEecchHhC
Confidence            7888999999999999999998 8888899999999987751           11 355666677777899999999887


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEK  496 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~  496 (509)
                      .                                                .+.+        ++|++++.+++.+++++++
T Consensus       359 ~------------------------------------------------~~~~--------~iRi~~~~~~~~l~~al~~  382 (389)
T PRK08068        359 E------------------------------------------------HGEG--------YVRVGLLTDEERLREAVER  382 (389)
T ss_pred             c------------------------------------------------cCCC--------eEEEEEcCCHHHHHHHHHH
Confidence            6                                                3333        9999999888999999999


Q ss_pred             HHHH
Q psy13922        497 FREF  500 (509)
Q Consensus       497 l~~~  500 (509)
                      |+++
T Consensus       383 l~~~  386 (389)
T PRK08068        383 IGKL  386 (389)
T ss_pred             HHHh
Confidence            9874

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=380.96  Aligned_cols=343  Identities=19%  Similarity=0.292  Sum_probs=284.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+.+++.+.+..   .. ..|++..|.+++|+++++++.+++|+++++++|++|+|+++++..++..++++
T Consensus        40 g~~~~~~~~~v~~a~~~~~~~---~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~  115 (387)
T PRK08960         40 GEPDFTTAEPIVAAGQAALAA---GH-TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDP  115 (387)
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---CC-CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCC
Confidence            55554  67899999888875   33 34999999999999999999999899999999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...+...|.+++.++++.+++|.+|++.+++.+++     +++++++++||||||.++|.++
T Consensus       116 gd----~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~NPtG~~~~~~~  186 (387)
T PRK08960        116 GK----HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA-----DTVGALVASPANPTGTLLSRDE  186 (387)
T ss_pred             CC----EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc-----cceEEEEECCCCCCCcCcCHHH
Confidence            98    99999999999999999999999999998777789999999998876     6889999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|+++|+||+|.++.+++  ...++..+         ..++++++||||.| |++|+|+||++   ++++
T Consensus       187 ~~~l~~~~~~~~~~li~De~Y~~~~~~~--~~~~~~~~---------~~~vi~~~S~SK~~-g~~GlRiG~~~---~~~~  251 (387)
T PRK08960        187 LAALSQALRARGGHLVVDEIYHGLTYGV--DAASVLEV---------DDDAFVLNSFSKYF-GMTGWRLGWLV---APPA  251 (387)
T ss_pred             HHHHHHHHHHcCCEEEEEccccccccCC--CCCChhhc---------cCCEEEEeeccccc-CCcccEEEEEE---cCHH
Confidence            9999999999999999999999998753  23343332         12499999999999 79999999998   7899


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+.+... ...+++.+                                  .|.++..++.         +...++++
T Consensus       252 ~~~~~~~~~~~~~~~~s~~----------------------------------~q~a~~~~l~---------~~~~~~l~  288 (387)
T PRK08960        252 AVPELEKLAQNLYISASTP----------------------------------AQHAALACFE---------PETLAILE  288 (387)
T ss_pred             HHHHHHHHHhhhccCCCHH----------------------------------HHHHHHHHhh---------cCcHHHHH
Confidence            9999988766 34455666                                  5555544443         11234578


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCee-ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.++++++.+.+.|+++ ++.+ ..|.+++|+|++++.           ...++.+++.++++++||.+.||+.|+.
T Consensus       289 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~-----------~~~~~~~~~~~ll~~~gi~v~pg~~f~~  356 (387)
T PRK08960        289 ARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISA-----------FGGDAFAFCRHFLETEHVAFTPGLDFGR  356 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEeccc-----------cCCCHHHHHHHHHHhCCEEEcCchHhCC
Confidence            88999999999999999987 7665 468899999987751           0123566667788889999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                      .                                               .+.+        |||++++.+.+.|++++++|
T Consensus       357 ~-----------------------------------------------~~~~--------~iRi~~~~~~~~l~~al~~l  381 (387)
T PRK08960        357 H-----------------------------------------------QAGQ--------HVRFAYTQSLPRLQEAVERI  381 (387)
T ss_pred             C-----------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHH
Confidence            1                                               1222        99999998899999999999


Q ss_pred             HHHHH
Q psy13922        498 REFHE  502 (509)
Q Consensus       498 ~~~~~  502 (509)
                      +++++
T Consensus       382 ~~~~~  386 (387)
T PRK08960        382 ARGLR  386 (387)
T ss_pred             HHHHh
Confidence            98764

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=1.3e-45  Score=381.45  Aligned_cols=361  Identities=25%  Similarity=0.444  Sum_probs=291.5

Q ss_pred             HHHHHHHhhcC-CCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-c
Q psy13922          7 LSLQVLALVSL-PQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-D   78 (509)
Q Consensus         7 ~~~~~~~~~~~-~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~   78 (509)
                      .+++++..... ++.+    +.|++  |+.+.+++.+.+.+    ...+|++..|.+++|+++++++++.+|+.++++ +
T Consensus         8 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~   83 (378)
T PRK07682          8 GIRKFFDLAANMEGVISLGVGEPDFVTPWNVREASIRSLEQ----GYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDE   83 (378)
T ss_pred             HHHHHHHHHHhcCCeEEeCCCCCCCCCCHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            45555555432 2333    66666  45677887777654    245599999999999999999999889888886 7


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCC
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN  158 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~  158 (509)
                      |++|+|+++++.+++++++++||    +|+++.|+|..+...++..|.+++.++.+.+.+|.+|++.+++.+.+     +
T Consensus        84 i~~t~G~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~  154 (378)
T PRK07682         84 IIVTVGASQALDVAMRAIINPGD----EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA-----K  154 (378)
T ss_pred             EEEeCChHHHHHHHHHHhCCCCC----EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc-----c
Confidence            99999999999999999999998    99999999999999999999999999987655689999999998876     7


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      ++++++++||||||.++|.+++++|+++|++|++++|+||+|.++.+++  .+.++..+. +.     ..++++++||||
T Consensus       155 ~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~-~~-----~~~~i~~~S~SK  226 (378)
T PRK07682        155 TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE--AYTSFASIK-GM-----RERTILISGFSK  226 (378)
T ss_pred             cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC--CCCChhhcc-cc-----cCCEEEEecCcc
Confidence            9999999999999999999999999999999999999999999999864  233444332 11     135899999999


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      .| |+||+|+||++   +++++++.+.+... ...+++.+                                  .|.++.
T Consensus       227 ~~-~~~GlR~G~~~---~~~~~i~~l~~~~~~~~~~~~~~----------------------------------~q~a~~  268 (378)
T PRK07682        227 GF-AMTGWRLGFIA---APVYFSEAMLKIHQYSMMCAPTM----------------------------------AQFAAL  268 (378)
T ss_pred             cc-cChhhhhhhhh---cCHHHHHHHHHHHHhhccCCCHH----------------------------------HHHHHH
Confidence            99 79999999998   79999999987654 33455666                                  455544


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .+++.          ...+++++++.++++++.+.+.|+++ |+.+..|+|++|+|+.+...          ++ ++.++
T Consensus       269 ~~l~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~----------~~-~~~~~  326 (378)
T PRK07682        269 EALRA----------GNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISST----------GL-SSEEF  326 (378)
T ss_pred             HHHhC----------ChHHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCC----------CC-CHHHH
Confidence            44431          11236788899999999999999998 88888899999999876410          12 34566


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +..+++++||.+.||..|+.                                                .+.+        
T Consensus       327 ~~~ll~~~gv~v~pg~~f~~------------------------------------------------~~~~--------  350 (378)
T PRK07682        327 AEQLLLEEKVAVVPGSVFGE------------------------------------------------SGEG--------  350 (378)
T ss_pred             HHHHHHhCCEEEcCchhhCc------------------------------------------------CCCC--------
Confidence            67777888999999998865                                                3333        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~~~  504 (509)
                      ++|||++.+.++|++++++|+++++++
T Consensus       351 ~iRis~~~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        351 FIRCSYATSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence            999999998999999999999988643

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-45  Score=382.08  Aligned_cols=342  Identities=24%  Similarity=0.366  Sum_probs=280.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|.+  |+.+.+++.+.+..   .....|+++.|.+++|+++++++++++|..++++ +|++|+|+++++..+++.+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~  115 (385)
T PRK09276         39 GDPDLPTPDHIIEAMCKAVED---PENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVN  115 (385)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC
Confidence            45554  66888888888875   2345699999999999999999998889888887 599999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|..|...++..|.+++.++++++.+|.+|++.+++.+..     ++++|++++||||||.+++.+
T Consensus       116 ~gd----~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~  186 (385)
T PRK09276        116 PGD----VVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK-----KAKLMFINYPNNPTGAVADLE  186 (385)
T ss_pred             CCC----EEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc-----cceEEEEeCCCCCCCCCCCHH
Confidence            998    99999999999999999999999999997666788999999888776     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. ...++.++.. .     ..++|+++||||.| |++|+|+||++   +++
T Consensus       187 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-~-----~~~~i~~~S~SK~~-g~~GlRiG~~i---~~~  255 (385)
T PRK09276        187 FFEEVVDFAKKYDIIVCHDAAYSEIAYDGY-KPPSFLEVPG-A-----KDVGIEFHSLSKTY-NMTGWRIGFAV---GNA  255 (385)
T ss_pred             HHHHHHHHHHHCCcEEEEecchhheecCCC-CCCChhccCC-C-----cCCEEEEecchhhc-CCcchhheeee---CCH
Confidence            999999999999999999999999987532 3444444311 0     23489999999999 79999999998   899


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+.+.... ..+.+.+                                  .|.++..++.          ....++
T Consensus       256 ~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~----------~~~~~~  291 (385)
T PRK09276        256 DLIAGLGKVKSNVDSGVFQA----------------------------------IQEAGIAALN----------GPQEVV  291 (385)
T ss_pred             HHHHHHHHHHhhccCCCCHH----------------------------------HHHHHHHHHc----------CcHHHH
Confidence            999999887652 2233434                                  3444433332          123347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++++.++++++.+.+.|+++ ++.+.++++++|+|++++  .         ++ ++.+++..+++++||.++||..|+.
T Consensus       292 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~--~---------~~-~~~~l~~~ll~~~gi~v~~g~~f~~  358 (385)
T PRK09276        292 EELRKIYQERRDILVEGLRKL-GLEVEPPKATFYVWAPVP--K---------GY-TSAEFATLLLDKAGVVVTPGNGFGE  358 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEECC--C---------CC-CHHHHHHHHHHhCCEEECCchhhCC
Confidence            888999999999999999998 888888999999998775  1         12 3556667778889999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++||+|+.+++++.+++++|
T Consensus       359 ------------------------------------------------~~~~--------~~Ris~~~~~~~l~~~l~~l  382 (385)
T PRK09276        359 ------------------------------------------------YGEG--------YFRIALTVPDERIEEAVERI  382 (385)
T ss_pred             ------------------------------------------------CCCC--------eEEEEeCCCHHHHHHHHHHH
Confidence                                                            3333        99999999899999999998


Q ss_pred             HH
Q psy13922        498 RE  499 (509)
Q Consensus       498 ~~  499 (509)
                      ++
T Consensus       383 ~~  384 (385)
T PRK09276        383 KK  384 (385)
T ss_pred             hh
Confidence            75

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=2e-45  Score=380.62  Aligned_cols=342  Identities=23%  Similarity=0.340  Sum_probs=281.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|.+  |+.+.+++.+.+..   ....+|+++.|.+++|+++++++++.+|++++++ +|++|+|+++++..++..+++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~  113 (383)
T TIGR03540        37 GDPDLPTPKHIVEALCKAAEN---PENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVN  113 (383)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCC
Confidence            55665  67788888888765   3345699999999999999999998888888876 699999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|..+...++..|++++.+|.+++++|.+|++.+++.+..     ++++|++++||||||.+++.+
T Consensus       114 ~gd----~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~-----~~~~v~i~~P~NPtG~~~~~~  184 (383)
T TIGR03540       114 PGD----IVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK-----KAKLMFINYPNNPTGAVAPLK  184 (383)
T ss_pred             CCC----EEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc-----cceEEEEeCCCCCcCccCCHH
Confidence            998    99999999999999999999999999998766788999999988876     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|++||++||+||+|.++.+.+ ....++.++...      ..++|+++||||.| |++|+|+||++   +++
T Consensus       185 ~~~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~~~~~~~~~~------~~~~i~~~SfSK~~-g~~GlRiG~~i---~~~  253 (383)
T TIGR03540       185 FFKELVEFAKEYNIIVCHDNAYSEITFDG-YKAPSFLEVDGA------KDVGIEFHSLSKTY-NMTGWRIGMAV---GNA  253 (383)
T ss_pred             HHHHHHHHHHHcCEEEEEecchhhhccCC-CCCcCcccCCCc------ccCEEEEEeccccc-CCccceeeEEe---CCH
Confidence            99999999999999999999999998853 233444433210      12479999999999 79999999998   899


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+...... ..+++.+                                  .|.++..+++          ...+|+
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~----------~~~~~~  289 (383)
T TIGR03540       254 DLIAGLGKVKTNVDSGVFQA----------------------------------IQYAAIAALN----------GPQDVV  289 (383)
T ss_pred             HHHHHHHHHHHhcccCCChH----------------------------------HHHHHHHHHh----------CCHHHH
Confidence            999999877653 2344444                                  4444444433          113447


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++++.++++++.+.+.|++. |+.+.++++++|+|++++  .         ++ ++.+++..+++++||.++||..|+.
T Consensus       290 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~--~---------~~-~~~~~~~~ll~~~gi~v~~g~~f~~  356 (383)
T TIGR03540       290 KEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVP--E---------GY-TSAEFAARLLEETGVVVTPGVGFGE  356 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECC--C---------CC-CHHHHHHHHHHHCCEEEecchhhCc
Confidence            788899999999999999998 888889999999998775  1         22 3556677778889999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++.+++++++++++|
T Consensus       357 ------------------------------------------------~~~~--------~~Ris~~~~~~~l~~~l~~l  380 (383)
T TIGR03540       357 ------------------------------------------------YGEG--------YIRISLTVPDERLEEAVARI  380 (383)
T ss_pred             ------------------------------------------------cCCC--------eEEEEecCCHHHHHHHHHHH
Confidence                                                            2323        99999998899999999998


Q ss_pred             HH
Q psy13922        498 RE  499 (509)
Q Consensus       498 ~~  499 (509)
                      ++
T Consensus       381 ~~  382 (383)
T TIGR03540       381 KK  382 (383)
T ss_pred             hh
Confidence            75

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.8e-45  Score=383.43  Aligned_cols=350  Identities=20%  Similarity=0.348  Sum_probs=279.1

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcC--CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDG--QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA  122 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~  122 (509)
                      ....|.+..|.++||+++|+++++++|  .++++++|++|+|+++++.+++.+++++||    .|+++.|+|.++...+.
T Consensus        87 ~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD----~Vlv~~P~Y~~f~~~~~  162 (447)
T PLN02607         87 ENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGD----ALLVPTPYYPGFDRDLR  162 (447)
T ss_pred             hhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHH
Confidence            344588899999999999999998877  358899999999999999999999999998    99999999999988777


Q ss_pred             -hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        123 -EFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       123 -~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                       ..|+++++|+.+.+.+|.+|++.++++++...+. .++++|+++|||||||.++|++++++|+++|+++|++||+||+|
T Consensus       163 ~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiY  242 (447)
T PLN02607        163 WRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIY  242 (447)
T ss_pred             hcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccc
Confidence             5799999999887777889999999999864332 47899999999999999999999999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV  280 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (509)
                      .++.|++ .++.++.++..+.+..+...++++++||||.| |++|+|+||++.  .++.++..++.... +..++.+   
T Consensus       243 a~~~f~~-~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs--~n~~l~~~~~~~~~-~~~~s~~---  314 (447)
T PLN02607        243 SGSVFSA-SEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYS--YNDKVVTTARRMSS-FTLVSSQ---  314 (447)
T ss_pred             cccccCC-CCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEE--cCHHHHHHHHHHhh-cCCCCHH---
Confidence            9988864 35677777644332111124589999999999 899999999973  47888887765543 3345666   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                                     .|.++..+++     ++.|.  .++++..++.++++++.+.+.|++. |
T Consensus       315 -------------------------------~q~~~~~~L~-----d~~~~--~~~l~~~r~~l~~~~~~~~~~L~~~-g  355 (447)
T PLN02607        315 -------------------------------TQHLLASMLS-----DEEFT--ENYIRTNRERLRKRYEMIVQGLRRA-G  355 (447)
T ss_pred             -------------------------------HHHHHHHHhC-----CchhH--HHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence                                           4555555555     22121  1237788999999999999999998 8


Q ss_pred             CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHH
Q psy13922        361 MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAK  440 (509)
Q Consensus       361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~  440 (509)
                      +.+.++++|+|+|++++  ...    .......+.+++..+++++||.+.||..|+.                       
T Consensus       356 i~~~~~~ag~fvw~~L~--~~~----~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~-----------------------  406 (447)
T PLN02607        356 IECLKGNAGLFCWMNLS--PLL----ETPTREGELALWDSILREVKLNISPGSSCHC-----------------------  406 (447)
T ss_pred             CCcccCCeeEEEEEEch--Hhh----cCCCchhHHHHHHHHHHhCCEEEcCccccCC-----------------------
Confidence            88889999999998874  100    0000112335556788889999999998876                       


Q ss_pred             HhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                                               ...+        |||++|+ .+++.|+++++||.+++++.+.+
T Consensus       407 -------------------------~~~g--------~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~~  441 (447)
T PLN02607        407 -------------------------SEPG--------WFRVCFANMSEDTLEVALKRIHRFMDRRKTA  441 (447)
T ss_pred             -------------------------CCCC--------EEEEEeccCCHHHHHHHHHHHHHHHHHHHhh
Confidence                                     2223        9999999 59999999999999999876543

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.8e-45  Score=377.05  Aligned_cols=362  Identities=25%  Similarity=0.396  Sum_probs=293.8

Q ss_pred             HHHHHHHHhhc-CCCC----CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc
Q psy13922          6 SLSLQVLALVS-LPQL----FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD   78 (509)
Q Consensus         6 ~~~~~~~~~~~-~~~~----~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~   78 (509)
                      +.++.+..++. .++.    .|.|++  |+.+.+++.+.+.+   .. ..|+++.|.+++|+++++++.+++|..+++++
T Consensus        11 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~---~~-~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~   86 (382)
T PRK06108         11 SGIREVANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALAD---GE-TFYTHNLGIPELREALARYVSRLHGVATPPER   86 (382)
T ss_pred             hHHHHHHHHHhccCCeEEecCCCCCCCCCHHHHHHHHHHHhc---CC-CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcce
Confidence            35666666653 3333    367766  56888888888776   33 34999999999999999999988898899999


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCC-CCCCCCHHHHHHHHHhhhccC
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES-KQWGLPISELERSITEARKHC  157 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~  157 (509)
                      |++|+|+++++..++..++++||    .|+++.|+|..+...++..|++++.++.+.+ .+|.+|++.+++.+++     
T Consensus        87 i~~t~g~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----  157 (382)
T PRK06108         87 IAVTSSGVQALMLAAQALVGPGD----EVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP-----  157 (382)
T ss_pred             EEEeCChHHHHHHHHHHhcCCCC----EEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-----
Confidence            99999999999999999999998    9999999999999999999999999998753 4688999999998876     


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.++++....++.++...      ..++++++|||
T Consensus       158 ~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~------~~~~i~~~S~S  231 (382)
T PRK06108        158 RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEP------DDRIIFVNSFS  231 (382)
T ss_pred             cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCC------cCCEEEEeech
Confidence            789999999999999999999999999999999999999999999988622233344433211      23589999999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM  316 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  316 (509)
                      |.| |++|+|+||++   +++++++.+.+... ...+++.+                                  .|.+.
T Consensus       232 K~~-g~~G~RiG~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~a~  273 (382)
T PRK06108        232 KNW-AMTGWRLGWLV---APPALGQVLEKLIEYNTSCVAQF----------------------------------VQRAA  273 (382)
T ss_pred             hhc-cCcccceeeee---CCHHHHHHHHHHHHhcccCCChH----------------------------------HHHHH
Confidence            999 79999999998   78999999887654 23445555                                  44444


Q ss_pred             hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      ..++..          ..++++++++.++++++.+.+.|++++++++..|++++|+|++++            +..++.+
T Consensus       274 ~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~------------~~~~~~~  331 (382)
T PRK06108        274 VAALDE----------GEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIP------------GVTDSLA  331 (382)
T ss_pred             HHHHhC----------ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCC------------CCCCHHH
Confidence            444331          123467788899999999999999888899888999999998775            1123556


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ++..+++++||.++||..|+.                                                .+.+       
T Consensus       332 ~~~~ll~~~gV~v~pg~~f~~------------------------------------------------~~~~-------  356 (382)
T PRK06108        332 LAKRLVDEAGLGLAPGTAFGP------------------------------------------------GGEG-------  356 (382)
T ss_pred             HHHHHHHhCCEEEeCchhhCC------------------------------------------------CCCC-------
Confidence            677788889999999998865                                                3333       


Q ss_pred             eeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        477 YHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       477 ~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                       ++|+|++.++++|++++++|+++++
T Consensus       357 -~~Ris~~~~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        357 -FLRWCFARDPARLDEAVERLRRFLA  381 (382)
T ss_pred             -EEEEEecCCHHHHHHHHHHHHHHHh
Confidence             9999999999999999999999875

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=6.9e-45  Score=377.83  Aligned_cols=351  Identities=19%  Similarity=0.315  Sum_probs=277.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC--CCCC-cEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP--ADWQ-DVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~--~~~~-~i~~t~G~~~al~~~~~~l   96 (509)
                      |.|.+  |+.+.+++.+.+..     ...|+++.|.+++|+++|+++++++|++  ++++ +|++|+|+++++..+++.+
T Consensus        36 ~~p~~~~~~~~~~a~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l  110 (393)
T TIGR03538        36 GEPKHPTPAFVLEALRENLHG-----LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAV  110 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHhhc-----cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHH
Confidence            55665  56788888776543     4559999999999999999999988876  6885 8999999999999999999


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +++||  ...|+++.|+|..|...++..|.+++.++++++++|.+|++.+++.+.+     ++++|++++||||||.+++
T Consensus       111 ~~~gd--~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~~p~NPtG~~~s  183 (393)
T TIGR03538       111 INPGQ--APLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR-----RCQLLFVCSPGNPTGAVLS  183 (393)
T ss_pred             cCCCC--cceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh-----cceEEEEeCCCCCcCcccC
Confidence            99987  1239999999999999999999999999998777789999999998876     7999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      .+++++|+++|+++|++||+||+|.++.+++.....+......+.+. ....++|+++||||.| |++|+|+||++   +
T Consensus       184 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~-~~~GlRvG~~i---~  258 (393)
T TIGR03538       184 LDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGR-DDFRRCLVFHSLSKRS-NLPGLRSGFVA---G  258 (393)
T ss_pred             HHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccc-cccccEEEEecchhhc-CCcccceEEEe---c
Confidence            99999999999999999999999999987642233333322222211 0134699999999999 79999999998   8


Q ss_pred             CHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        257 DPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++++.+.+.... ..+++.+                                  .|.++...+.        .+   +
T Consensus       259 ~~~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~--------~~---~  293 (393)
T TIGR03538       259 DAEILKAFLRYRTYHGCAMPIP----------------------------------TQLASIAAWN--------DE---Q  293 (393)
T ss_pred             CHHHHHHHHHHHHhhccCcCHH----------------------------------HHHHHHHHhc--------Ch---H
Confidence            99999999877652 3345555                                  4444333332        02   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++++.++.++++++.+.+.|++.  +.+..|.+|+|+|++++.              ++.+++..+++++||.+.||+.|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~~--------------~~~~~~~~l~~~~gV~v~pg~~f  357 (393)
T TIGR03538       294 HVRENRALYREKFAAVLEILGQV--LDLELPDAGFYLWPKVPG--------------DDEAFARALYEEENVTVLPGRFL  357 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECCC--------------CHHHHHHHHHHHCCEEEeCCccc
Confidence            37788889999999999999874  456679999999987651              24556677778899999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +..                                                .  .+..++..++||+|+.++++++++++
T Consensus       358 ~~~------------------------------------------------~--~~~~~~~~~~Ris~~~~~~~l~~~l~  387 (393)
T TIGR03538       358 ARE------------------------------------------------A--EGVNPGEGRVRIALVAPLEECVEAAE  387 (393)
T ss_pred             ccc------------------------------------------------c--cCCCCCCCEEEEEecCCHHHHHHHHH
Confidence            751                                                0  00122233999999988999999999


Q ss_pred             HHHHH
Q psy13922        496 KFREF  500 (509)
Q Consensus       496 ~l~~~  500 (509)
                      +|+++
T Consensus       388 ~l~~~  392 (393)
T TIGR03538       388 RIRSF  392 (393)
T ss_pred             HHHHh
Confidence            99875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=5.4e-45  Score=386.47  Aligned_cols=348  Identities=19%  Similarity=0.351  Sum_probs=275.4

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcC--CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH-
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDG--QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA-  122 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~-  122 (509)
                      ...|++..|.++||+++|+++++.+|  +.+++++|++|+|+++++..++.+++++||    .|+++.|+|..+...+. 
T Consensus        87 ~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD----~Vlv~~P~Y~~~~~~~~~  162 (496)
T PLN02376         87 IANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGD----VFLIPSPYYAAFDRDLRW  162 (496)
T ss_pred             hhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCC----EEEECCCCccchHHHHHh
Confidence            34588999999999999999998888  668999999999999999999999999999    99999999999998887 


Q ss_pred             hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc-cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        123 EFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       123 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~-~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ..|+++++++++.+.+|++|++.++++++...+ ..++++|+++|||||||.++|++++++|+++|+++|++||+||+|.
T Consensus       163 ~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~  242 (496)
T PLN02376        163 RTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYA  242 (496)
T ss_pred             hCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence            589999999997666789999999887654322 1378999999999999999999999999999999999999999999


Q ss_pred             cccccCCCccccHHHHHHHhCCCC-CCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV  280 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (509)
                      ++.|.+. .+.++.++..+..... ...++++++||||.| |+||+|+||++.  .++.+.+.++.... +..++.+   
T Consensus       243 ~~~f~~~-~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~--~~~~l~~~~~~~~~-~~~vs~~---  314 (496)
T PLN02376        243 ATVFAGG-DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYS--FNDSVVSCARKMSS-FGLVSSQ---  314 (496)
T ss_pred             ccccCCC-CcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEE--CCHHHHHHHHHHhh-cCCCCHH---
Confidence            9988643 5677776644321100 012467789999999 799999999982  36777776655443 3346666   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                                     .|.++..+++     ++.|.  .+++++.++.++++++.+.+.|++. |
T Consensus       315 -------------------------------~Q~a~~~~L~-----d~~~~--~~~l~~~r~~l~~r~~~l~~~L~~~-g  355 (496)
T PLN02376        315 -------------------------------TQLMLASMLS-----DDQFV--DNFLMESSRRLGIRHKVFTTGIKKA-D  355 (496)
T ss_pred             -------------------------------HHHHHHHHhC-----ChhHH--HHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence                                           5666666665     22220  2347788899999999999999987 8


Q ss_pred             CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHH
Q psy13922        361 MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAK  440 (509)
Q Consensus       361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~  440 (509)
                      +.+.++++|+|+|++++...  .   .......+.+++..++++.||.+.||..|+.                       
T Consensus       356 i~~~~~~aG~flwi~l~~~~--~---~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~-----------------------  407 (496)
T PLN02376        356 IACLTSNAGLFAWMDLRHLL--R---DRNSFESEIELWHIIIDKVKLNVSPGSSFRC-----------------------  407 (496)
T ss_pred             CcccCCCceEEEEEEchhhh--c---cCCchhHHHHHHHHHHHcCCEEEeCccccCC-----------------------
Confidence            88888999999998875110  0   0000112355667788888999999999876                       


Q ss_pred             HhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHH
Q psy13922        441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~  505 (509)
                                               .+.+        ||||+|+ .++++|+++++||++++.+.+
T Consensus       408 -------------------------~~~g--------~~Ri~fa~~~~~~l~~al~rl~~~l~~~~  440 (496)
T PLN02376        408 -------------------------TEPG--------WFRICFANMDDDTLHVALGRIQDFVSKNK  440 (496)
T ss_pred             -------------------------CCCC--------EEEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence                                     2223        9999999 589999999999999997544

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.1e-45  Score=378.88  Aligned_cols=344  Identities=20%  Similarity=0.324  Sum_probs=281.1

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc-EEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~   98 (509)
                      ++|.+  |+.+++++.+.+..   .....|+++.|.++||+++++++++++|+++++++ |++|+|+++++..++.++++
T Consensus        43 g~p~~~~p~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~  119 (394)
T PRK05942         43 GNPDGAAPQPVIEAAIAALAD---PQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVN  119 (394)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCC
Confidence            45554  56678887776654   33456999999999999999999998898888884 99999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|..+...+...|.+++.++.+.+++|.+|++.+++.+.+     ++++|++++||||||.++|.+
T Consensus       120 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~~P~NPtG~~~s~~  190 (394)
T PRK05942        120 PGD----VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ-----QAKILYFNYPSNPTTATAPRE  190 (394)
T ss_pred             CCC----EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc-----cceEEEEcCCCCCCCCcCCHH
Confidence            998    99999999999999999999999999998777789999999998876     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. ...++.++.. .     ...+|+++||||.| |++|+|+||++   +++
T Consensus       191 ~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~-~-----~~~~i~~~SfSK~~-~~~GlRiG~i~---~~~  259 (394)
T PRK05942        191 FFEEIVAFARKYEIMLVHDLCYAELAFDGY-QPTSLLEIPG-A-----KDIGVEFHTLSKTY-NMAGWRVGFVV---GNR  259 (394)
T ss_pred             HHHHHHHHHHHcCeEEEEeccchhhccCCC-CCCChhhCCC-c-----cccEEEEecchhcc-CChhhheeeee---cCH
Confidence            999999999999999999999999988542 3344443311 0     12378899999999 79999999998   799


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+...... ..+.+.+                                  .|.++..+++          ...+++
T Consensus       260 ~l~~~l~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~----------~~~~~~  295 (394)
T PRK05942        260 HIIQGLRTLKTNLDYGIFSA----------------------------------LQKAAETALQ----------LPDSYL  295 (394)
T ss_pred             HHHHHHHHHHhhcccCCCHH----------------------------------HHHHHHHHHh----------CcHHHH
Confidence            999999877652 3345555                                  4444444433          112347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|++. ++.+.++++++|+|++++.           ++ ++.+++.++++++||.+.||..|+.
T Consensus       296 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~~~~~~-----------~~-~~~~~~~~~l~~~gV~v~~g~~f~~  362 (394)
T PRK05942        296 QQVQERYRTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCPV-----------GM-GSTDFALNVLQKTGVVVTPGNAFGE  362 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeeEEEEECCC-----------CC-CHHHHHHHHHHHCCEEEeCChhhCc
Confidence            788899999999999999988 8888889999999987751           12 3455567788899999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++.+.+.+.+++++|
T Consensus       363 ------------------------------------------------~~~~--------~iRis~~~~~~~l~~~l~~l  386 (394)
T PRK05942        363 ------------------------------------------------GGEG--------YVRISLIADCDRLGEALDRL  386 (394)
T ss_pred             ------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHH
Confidence                                                            3333        99999998889999999999


Q ss_pred             HHHH
Q psy13922        498 REFH  501 (509)
Q Consensus       498 ~~~~  501 (509)
                      .++.
T Consensus       387 ~~~~  390 (394)
T PRK05942        387 KQAG  390 (394)
T ss_pred             HHhh
Confidence            8754

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.3e-45  Score=378.63  Aligned_cols=356  Identities=22%  Similarity=0.345  Sum_probs=292.5

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+.+++.+.+.+   .. .+|+++.|.+++|+++++++.+.+|..+.+++|++|+|+++++..++.+++++
T Consensus        41 g~p~~~~~~~~~~~~~~~~~~---~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~  116 (402)
T PRK06107         41 GEPDFDTPDHIKQAAVAAIER---GE-TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEA  116 (402)
T ss_pred             CCCCCCCCHHHHHHHHHHHHc---CC-CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCC
Confidence            55555  57888888888875   33 45999999999999999999988898889999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..|...+...+.+++.++.+++.+|.+|++.+++.+.+     ++++|++++|+||||.++|.++
T Consensus       117 gd----~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~s~~~  187 (402)
T PRK06107        117 GD----EVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP-----RTRWLILNAPSNPTGAVYSRAE  187 (402)
T ss_pred             CC----EEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc-----CceEEEEECCCCCCCcCcCHHH
Confidence            98    99999999999999999899999999887666788999999998876     7999999999999999999999


Q ss_pred             HHHHHHHHHHC-CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        180 IQDIIKFAHRE-KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       180 l~~l~~ia~~~-~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      +++|+++|+++ ++++|+||+|.++.+.+. .+.++.++.++.     ..++++++||||.| |+||+|+||++   +++
T Consensus       188 ~~~l~~~a~~~~~~~iI~De~y~~l~~~~~-~~~~~~~~~~~~-----~~~vi~~~S~SK~~-~~pGlRiG~~~---~~~  257 (402)
T PRK06107        188 LRALADVLLRHPHVLVLTDDIYDHIRFDDE-PTPHLLAAAPEL-----RDRVLVTNGVSKTY-AMTGWRIGYAA---GPA  257 (402)
T ss_pred             HHHHHHHHHHcCCeEEEEehhccccccCCC-CCCCHHHhCcCc-----cCCEEEEeccchhh-cCcccceeeee---cCH
Confidence            99999999998 999999999999988642 445665554332     23599999999999 79999999998   899


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+..... ...+++.+                                  .|.++..++..          ...++
T Consensus       258 ~~~~~~~~~~~~~~~~~s~~----------------------------------~q~~~~~~l~~----------~~~~~  293 (402)
T PRK06107        258 DLIAAINKLQSQSSSCPSSI----------------------------------SQAAAAAALNG----------DQSFV  293 (402)
T ss_pred             HHHHHHHHHHHhcccCCChH----------------------------------HHHHHHHHhcC----------ChHHH
Confidence            99999988776 34567777                                  56666555541          11347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCC-HHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLP-AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ++.++.++++++.+.+.|++++|+.+.+|+||+|+|+++..- ....  ....+..++.+++..+++++||.++||..|+
T Consensus       294 ~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg  371 (402)
T PRK06107        294 TESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTT--PEGKVLETDQDVVLYLLDSAGVAVVQGTAYG  371 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeeccccccccc--ccccCCCCHHHHHHHHHHhCCEEEeCccccC
Confidence            888889999999999999998788888999999999877310 0000  0000122456667788899999999999887


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEK  496 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~  496 (509)
                      .                                                .+          +||++|+.+++++++++++
T Consensus       372 ~------------------------------------------------~~----------~iRis~~~~~e~l~~~l~~  393 (402)
T PRK06107        372 L------------------------------------------------SP----------YFRLSIATSLETLEEACAR  393 (402)
T ss_pred             C------------------------------------------------CC----------eEEEEeCCCHHHHHHHHHH
Confidence            6                                                44          9999999999999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      |++++++.
T Consensus       394 l~~~l~~~  401 (402)
T PRK06107        394 IERAVAAL  401 (402)
T ss_pred             HHHHHHhc
Confidence            99998754

>PRK07324 transaminase; Validated

Probab=100.00  E-value=7.6e-45  Score=374.62  Aligned_cols=335  Identities=22%  Similarity=0.308  Sum_probs=280.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+ +++.+++..   ..+ +|++..|.++||+++++++.     .+++++|++|+|+++++.+++.+++++
T Consensus        34 ~e~~~~~~~~~-~~~~~~~~~---~~~-~Y~~~~G~~~lr~~ia~~~~-----~~~~~~vi~t~G~~~al~~~~~~l~~~  103 (373)
T PRK07324         34 EELLALAGKNP-EAFYQELGQ---KKL-TYGWIEGSPEFKEAVASLYQ-----NVKPENILQTNGATGANFLVLYALVEP  103 (373)
T ss_pred             HHHHhccCcch-HHHHHHHhc---CCc-cCCCCCCCHHHHHHHHHHhc-----CCChhhEEEcCChHHHHHHHHHHhCCC
Confidence            66665  4566 888888776   444 49999999999999999984     257899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|.+++.++.+++++|.+|++.+++.+..     ++++|++++||||||.++++++
T Consensus       104 gd----~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-----~~kli~i~~p~NPtG~~~~~~~  174 (373)
T PRK07324        104 GD----HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRP-----NTKLICINNANNPTGALMDRAY  174 (373)
T ss_pred             CC----EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCC-----CCcEEEEeCCCCCCCCCCCHHH
Confidence            98    99999999999999999999999999998777788999999988776     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|++||+||+|.++.+++  ...++.+..         .++|+++||||.| |++|+|+||++   ++++
T Consensus       175 l~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~s~~~~~---------~~~I~~~s~SK~~-~~~G~RiG~i~---~~~~  239 (373)
T PRK07324        175 LEEIVEIARSVDAYVLSDEVYRPLDEDG--STPSIADLY---------EKGISTNSMSKTY-SLPGIRVGWIA---ANEE  239 (373)
T ss_pred             HHHHHHHHHHCCCEEEEEccccccccCC--CCCChhhcc---------CCEEEEecchhhc-CCccceeEEEe---cCHH
Confidence            9999999999999999999999988753  244444331         2389999999999 79999999998   7899


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++++.+.+. ...+.+.+                                  .|.+...+++          ....+++
T Consensus       240 li~~~~~~~~~~~~~~~~~----------------------------------~q~~a~~~l~----------~~~~~l~  275 (373)
T PRK07324        240 VIDILRKYRDYTMICAGVF----------------------------------DDMLASLALE----------HRDAILE  275 (373)
T ss_pred             HHHHHHHHhCcEEecCChH----------------------------------HHHHHHHHHc----------CHHHHHH
Confidence            9999998876 23455555                                  3333333332          1223478


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|.+.+++.+..|.++++.|+.++.+            .++.+++.++++++||.++||+.|+. 
T Consensus       276 ~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~------------~~~~~~~~~ll~~~gv~v~pg~~F~~-  342 (373)
T PRK07324        276 RNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD------------MPSEDFCLKLLKETGVLLVPGNRFDL-  342 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC------------CCHHHHHHHHHHhcCEEEECccccCC-
Confidence            88899999999999999988788888899999888877632            24667788888999999999998876 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     ++          +||||++.+++.|+++++||+
T Consensus       343 -----------------------------------------------~~----------~iRis~~~~~~~l~~~l~rl~  365 (373)
T PRK07324        343 -----------------------------------------------EG----------HVRIGYCCDTETLKKGLKKLS  365 (373)
T ss_pred             -----------------------------------------------CC----------eEEEEecCCHHHHHHHHHHHH
Confidence                                                           44          999999999999999999999


Q ss_pred             HHHHHH
Q psy13922        499 EFHEEF  504 (509)
Q Consensus       499 ~~~~~~  504 (509)
                      ++++++
T Consensus       366 ~~l~~~  371 (373)
T PRK07324        366 EFLREF  371 (373)
T ss_pred             HHHHhc
Confidence            999765

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-44  Score=375.34  Aligned_cols=347  Identities=27%  Similarity=0.380  Sum_probs=286.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+.+++.+++..   . ..+|.+..|.+++|+++++++++++|.++++++|++|+|+++++.+++.+++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  116 (391)
T PRK08361         41 GEPDFDTPKNIKEAAKRALDE---G-WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEE  116 (391)
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCC
Confidence            56665  46788888887765   3 334988899999999999999988888899999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      |+    +|++++|+|..+...++..|++++.++++++++|.+|++.+++.++.     +++++++++||||||.+++.++
T Consensus       117 g~----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-----~~~~v~i~~p~NPtG~~~~~~~  187 (391)
T PRK08361        117 GD----EVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK-----RTRMIVINYPNNPTGATLDKEV  187 (391)
T ss_pred             CC----EEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc-----ccEEEEEeCCCCCCCcCcCHHH
Confidence            98    99999999999999999999999999998777789999999999887     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++++++|+||+|.++.+++. ...++.+..        ..++++++||||.| |++|+|+||++   .+++
T Consensus       188 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~i~~~s~SK~~-~~~GlRiG~~~---~~~~  254 (391)
T PRK08361        188 AKAIADIAEDYNIYILSDEPYEHFLYEGA-KHYPMIKYA--------PDNTILANSFSKTF-AMTGWRLGFVI---APEQ  254 (391)
T ss_pred             HHHHHHHHHHcCeEEEEEcccccceeCCC-CCCCHhhcC--------CCCEEEEecCchhc-CCcHhhhhhhc---cCHH
Confidence            99999999999999999999999987532 334444332        12488999999999 79999999998   7889


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+.+... ...+++.+                                  .|.++..++.     ++.+.   ++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~-----~~~~~---~~~~  292 (391)
T PRK08361        255 VIKDMIKLHAYIIGNVASF----------------------------------VQIAGIEALR-----SKESW---KAVE  292 (391)
T ss_pred             HHHHHHHHHhhhccCCChH----------------------------------HHHHHHHHhc-----CCccc---HHHH
Confidence            9998877654 33455555                                  4444444443     11122   3478


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|++++++.+.+|+|++|+|++++.          .++ ++.+++..+++++||.+.||..|+. 
T Consensus       293 ~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~----------~~~-~~~~l~~~l~~~~gv~v~pg~~f~~-  360 (391)
T PRK08361        293 EMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDE----------TGM-SSEDFAEWLLEKARVVVIPGTAFGK-  360 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCC----------CCC-CHHHHHHHHHHhCCEEEcCchhhCC-
Confidence            8899999999999999999888888999999999987751          122 3555666777789999999998876 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     .+.+        +|||+++.+++++++++++|+
T Consensus       361 -----------------------------------------------~~~~--------~iRi~~~~~~~~l~~al~~l~  385 (391)
T PRK08361        361 -----------------------------------------------AGEG--------YIRISYATSKEKLIEAMERME  385 (391)
T ss_pred             -----------------------------------------------CCCC--------EEEEEecCCHHHHHHHHHHHH
Confidence                                                           3333        999999998999999999999


Q ss_pred             HHHHH
Q psy13922        499 EFHEE  503 (509)
Q Consensus       499 ~~~~~  503 (509)
                      +++++
T Consensus       386 ~~l~~  390 (391)
T PRK08361        386 KALEE  390 (391)
T ss_pred             HHHhc
Confidence            98864

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=1.5e-44  Score=376.32  Aligned_cols=352  Identities=20%  Similarity=0.324  Sum_probs=280.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|.+  |+.+++++.+.+..   ....+|+++.|.+++|+++++++++++|++++++ +|++|+|+++++..++..+++
T Consensus        38 ~~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~  114 (405)
T PRK09148         38 GNPDLPTPQHIVDKLCETAQD---PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITA  114 (405)
T ss_pred             CCCCCCCCHHHHHHHHHHHcC---cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcC
Confidence            55654  57888888777654   3345699999999999999999998889888887 899999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|..+...++..|++++.++.++++.|..+   +++.++...  ++++++++++||||||.++|.+
T Consensus       115 ~gd----~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~---l~~~~~~~~--~~~~~v~l~~P~NPtG~~~s~~  185 (405)
T PRK09148        115 PGD----VILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPA---LERAVRHSI--PKPIALIVNYPSNPTAYVADLD  185 (405)
T ss_pred             CCC----EEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccC---HHHHHhhcc--ccceEEEEeCCCCCCCcCCCHH
Confidence            998    9999999999999999999999999999766555434   444443211  1689999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. .+.++.++. .   .  ..++|+++||||.+ |+||+|+||++   +++
T Consensus       186 ~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~s~~~~~-~---~--~~~~i~~~SfSK~~-~~pGlR~G~~v---~~~  254 (405)
T PRK09148        186 FYKDVVAFAKKHDIIILSDLAYSEIYFDGN-PPPSVLQVP-G---A--KDVTVEFTSMSKTF-SMAGWRMGFAV---GNE  254 (405)
T ss_pred             HHHHHHHHHHHcCeEEEEeccchhhhcCCC-CCCChhhCC-C---c--cCcEEEEecccccc-CCcchheeeee---CCH
Confidence            999999999999999999999999988542 344444431 1   0  12478899999999 79999999998   899


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+.+.+. ...+++.+                                  .|.++..++..          ..+++
T Consensus       255 ~~i~~l~~~~~~~~~~~~~~----------------------------------~q~~~~~~L~~----------~~~~~  290 (405)
T PRK09148        255 RLIAALTRVKSYLDYGAFTP----------------------------------IQVAATAALNG----------PQDCI  290 (405)
T ss_pred             HHHHHHHHHHHHhccCCChH----------------------------------HHHHHHHHHhC----------cHHHH
Confidence            99999988776 23455666                                  45554444431          12347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++++.++++++.+.+.|++. ++.+..|++|+|+|++++-..         ....+.+++..++++.||.++||..|+.
T Consensus       291 ~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~---------~~~~~~~~~~~ll~~~gV~v~pg~~f~~  360 (405)
T PRK09148        291 AEMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIPEAF---------RHLGSLEFSKLLVEKADVAVAPGVGFGE  360 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECCCcc---------CCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence            888999999999999999987 787778999999998764110         0112456667778889999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        |+||+++.+++.+.+++++|
T Consensus       361 ------------------------------------------------~~~~--------~~Ri~~~~~~~~l~~al~~l  384 (405)
T PRK09148        361 ------------------------------------------------HGDG--------YVRIALVENEQRIRQAARNI  384 (405)
T ss_pred             ------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHH
Confidence                                                            3333        99999999999999999999


Q ss_pred             HHHHHHHHh
Q psy13922        498 REFHEEFLA  506 (509)
Q Consensus       498 ~~~~~~~~~  506 (509)
                      .++++++-.
T Consensus       385 ~~~l~~~~~  393 (405)
T PRK09148        385 KRFLSSADE  393 (405)
T ss_pred             HHHHHHHHH
Confidence            999976543

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.5e-44  Score=381.57  Aligned_cols=348  Identities=22%  Similarity=0.336  Sum_probs=274.9

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCC--CCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQP--ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA  122 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~  122 (509)
                      ....|++..|.++||+++|+++++++|..  +++++|++|+|+++++..++.+++++||    .|+++.|+|..|...+.
T Consensus        78 ~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd----~Vlv~~P~Y~~~~~~~~  153 (468)
T PLN02450         78 ELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGD----AFLLPTPYYPGFDRDLK  153 (468)
T ss_pred             hhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCC----EEEECCCCCCchHHHHh
Confidence            44559999999999999999999877744  7899999999999999999999999999    99999999999988888


Q ss_pred             -hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc-cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        123 -EFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       123 -~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~-~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                       ..|++++.++++++.+|.+|++.+++.+++..+ ..++++|+++|||||||.++|.+++++|+++|+++|++||+||+|
T Consensus       154 ~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y  233 (468)
T PLN02450        154 WRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIY  233 (468)
T ss_pred             hcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccc
Confidence             589999999987666789999999998876322 137899999999999999999999999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHh--CCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEM--GEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLA  278 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~  278 (509)
                      .++.+++. .+.++.++..+.  .......++++++||||.| |++|+|+||++.  .++.+++.+.+... +..++.+ 
T Consensus       234 ~~~~f~~~-~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~--~~~~l~~~~~~~~~-~~~~s~~-  307 (468)
T PLN02450        234 SGTVFDSP-GFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYS--NDEMVVSAATKMSS-FGLVSSQ-  307 (468)
T ss_pred             cccccCCC-CcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEE--CCHHHHHHHHHHhh-cCCCCHH-
Confidence            99888642 455655543211  0001134699999999999 799999999982  34556776665532 3345666 


Q ss_pred             hhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13922        279 LVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI  358 (509)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  358 (509)
                                                       .|.++..+++     ++.|..  .++++.++.++++++.+.+.|+++
T Consensus       308 ---------------------------------~Q~a~~~~L~-----~~~~~~--~~l~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        308 ---------------------------------TQYLLSALLS-----DKKFTK--NYLEENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             ---------------------------------HHHHHHHHhC-----CchhHH--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                             5666666665     222322  136778899999999999999998


Q ss_pred             CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHH
Q psy13922        359 EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAI  438 (509)
Q Consensus       359 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~  438 (509)
                       |+.+.++++|+|+|++++  ...    .......+.+++..+++++||.+.||..|+.                     
T Consensus       348 -gi~~~~~~~g~flwi~l~--~~~----~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~---------------------  399 (468)
T PLN02450        348 -GIKCLKSNAGLFCWVDMR--HLL----KSNTFEAEMELWKKIVYEVKLNISPGSSCHC---------------------  399 (468)
T ss_pred             -CCcccCCCceEEEEEEch--Hhc----CcCCchHHHHHHHHHHHhCCEEEeCccccCC---------------------
Confidence             888889999999998774  100    0001112344567788889999999998876                     


Q ss_pred             HHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHH
Q psy13922        439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~  505 (509)
                                                 .+.+        ||||+|+ .++++|++++++|++++++..
T Consensus       400 ---------------------------~~~g--------~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        400 ---------------------------TEPG--------WFRVCFANMSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             ---------------------------CCCC--------EEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence                                       3333        9999999 589999999999999987644

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=1.4e-44  Score=376.63  Aligned_cols=345  Identities=23%  Similarity=0.394  Sum_probs=280.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+.+++.+.+.+   .....|++..|.+++|+++++++.+. +..+++++|++|+|+++++.+++.+++++||    +
T Consensus        50 ~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd----~  121 (401)
T TIGR01264        50 DPEVMQAMKDSLDS---GKYNGYAPTVGALSAREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALANAGQ----N  121 (401)
T ss_pred             CHHHHHHHHHHHhc---cCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhCCCCC----E
Confidence            56788888888776   34556999999999999999999864 6678899999999999999999999999988    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..+...++..|++++.++++.+.+|++|++.+++.+.+     +++++++++||||||.+++.+++++|+++
T Consensus       122 v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~  196 (401)
T TIGR01264       122 ILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE-----KTAALIVNNPSNPCGSVFSRQHLEEILAV  196 (401)
T ss_pred             EEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc-----CceEEEEcCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999987666789999999998876     68999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-----HHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-----GVK  261 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-----~~~  261 (509)
                      |+++|++||+||+|.+|.+++. .+.++.++.+       ..++|+++||||.| |++|+|+||++.  .++     +++
T Consensus       197 a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-------~~~vi~~~SfSK~~-~~~GlRiG~iv~--~~~~~~~~~~~  265 (401)
T TIGR01264       197 AERQCLPIIADEIYGDMVFSGA-TFEPLASLSS-------TVPILSCGGLAKRW-LVPGWRLGWIII--HDRRGILRDIR  265 (401)
T ss_pred             HHHCCCEEEEEhhhhhhccCCc-ccccHHHcCC-------CCcEEEEccCcccC-CCccceEEEEEe--cCcchhHHHHH
Confidence            9999999999999999988642 3455555432       22489999999999 799999999983  221     455


Q ss_pred             HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        262 AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      +.+.+......+++.+                                  .|.++..++.         +...+++++.+
T Consensus       266 ~~~~~~~~~~~~~~~~----------------------------------~q~a~~~~l~---------~~~~~~l~~~~  302 (401)
T TIGR01264       266 DGLVKLSQRILGPCTI----------------------------------VQGALPSILL---------RTPQEYFDGTL  302 (401)
T ss_pred             HHHHHHhhccCCCCcH----------------------------------HHHHHHHHHH---------hCcHHHHHHHH
Confidence            5555544334456666                                  5555555543         11124578889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCc
Q psy13922        342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGT  421 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~  421 (509)
                      +.++++++.+.+.|++++++.+..|++|+|+|++++...       ..+..++.+++..+++++||.++||..|+.    
T Consensus       303 ~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~-------~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~----  371 (401)
T TIGR01264       303 SVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEH-------FPEFKNDVEFTERLVAEQSVFCLPGSCFEY----  371 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccc-------cCCCCCHHHHHHHHHHhCCEEEeCchhcCC----
Confidence            999999999999999987888788999999998875210       001123566677778889999999998865    


Q ss_pred             cccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHH
Q psy13922        422 YHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       422 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                                                                  ++          ++|++++.+++.+++++++|.+++
T Consensus       372 --------------------------------------------~~----------~iRis~~~~~~~l~~~l~rl~~~~  397 (401)
T TIGR01264       372 --------------------------------------------PG----------FFRVVLTVPVVMMEEACSRIQEFC  397 (401)
T ss_pred             --------------------------------------------CC----------eEEEEEcCCHHHHHHHHHHHHHHH
Confidence                                                        44          999999988999999999999998


Q ss_pred             HH
Q psy13922        502 EE  503 (509)
Q Consensus       502 ~~  503 (509)
                      ++
T Consensus       398 ~~  399 (401)
T TIGR01264       398 ER  399 (401)
T ss_pred             hc
Confidence            65

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=1.4e-44  Score=374.32  Aligned_cols=343  Identities=16%  Similarity=0.275  Sum_probs=278.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|.+  |+.+.+++.+.+.+   . ..+|+++.|.+++|+++++++.+.+|++.++ ++|++|+|+++++..+++.+++
T Consensus        37 g~p~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~  112 (384)
T PRK12414         37 GAPNFAPDPALVEGVARAMRD---G-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVH  112 (384)
T ss_pred             CCCCCCCCHHHHHHHHHHHHh---C-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcC
Confidence            55666  66788888887765   2 3459999999999999999999988987765 6899999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|..+...++..|.+++.++.+++ +|.+|++.|++.++.     ++++|++++||||||.++|++
T Consensus       113 ~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~-----~~~~v~i~~p~NPTG~~~s~~  182 (384)
T PRK12414        113 PGD----EVIYFEPSFDSYAPIVRLQGATPVAIKLSPE-DFRVNWDEVAAAITP-----RTRMIIVNTPHNPSATVFSAA  182 (384)
T ss_pred             CCC----EEEEeCCCccchHHHHHHcCCEEEEEecCcc-ccccCHHHHHhhcCc-----ccEEEEEcCCCCCCCcCCCHH
Confidence            998    9999999999999999999999999998754 478999999998876     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.++.+++. ...++.++ ++.     ..++|+++||||.| |+||+|+||++   +++
T Consensus       183 ~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~-~~~-----~~~~i~~~SfSK~~-~~pGlRiG~~v---~~~  251 (384)
T PRK12414        183 DLARLAQLTRNTDIVILSDEVYEHVVFDGA-RHHSMARH-REL-----AERSVIVSSFGKSY-HVTGWRVGYCL---APA  251 (384)
T ss_pred             HHHHHHHHHHHCCeEEEEhhhhhhccCCCC-CccCcccC-cCc-----cCcEEEEecccccc-cCccceEEEEe---cCH
Confidence            999999999999999999999999988643 22233322 111     22599999999999 79999999998   799


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+.+... ...+.+.+                                  .|.++..++..     +   .+   .
T Consensus       252 ~l~~~l~~~~~~~~~~~s~~----------------------------------~q~a~~~~l~~-----~---~~---~  286 (384)
T PRK12414        252 ELMDEIRKVHQFMVFSADTP----------------------------------MQHAFAEALAE-----P---AS---Y  286 (384)
T ss_pred             HHHHHHHHHHhheecCCCcH----------------------------------HHHHHHHHhcC-----C---hH---H
Confidence            99999988765 34566666                                  55555555541     1   11   2


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      .++++.++++++.+.+.|++. |+.+.++.||||+|++++-.          ....+.+++.++++++||.+.||+.|+.
T Consensus       287 ~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~----------~~~~~~~~~~~~l~~~gV~v~pg~~f~~  355 (384)
T PRK12414        287 LGLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHF----------SDESDSDFVLRLIRDARVATIPLSAFYT  355 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEccccc----------CCCCHHHHHHHHHHhCCEEEecchhhcC
Confidence            346778899999999999998 88888999999999877410          0113455677888899999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                      ..                                              .+.+        ++||+++.++++++++++||
T Consensus       356 ~~----------------------------------------------~~~~--------~iRis~~~~~~~~~~~~~rl  381 (384)
T PRK12414        356 DG----------------------------------------------TDTG--------LIRLSFSKDDATLVEGARRL  381 (384)
T ss_pred             CC----------------------------------------------CCCC--------EEEEEecCCHHHHHHHHHHH
Confidence            10                                              1123        99999999999999999999


Q ss_pred             HH
Q psy13922        498 RE  499 (509)
Q Consensus       498 ~~  499 (509)
                      .+
T Consensus       382 ~~  383 (384)
T PRK12414        382 CS  383 (384)
T ss_pred             hh
Confidence            75

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-44  Score=372.67  Aligned_cols=363  Identities=20%  Similarity=0.291  Sum_probs=287.4

Q ss_pred             HHHHHHHhhcCCCCC----CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cE
Q psy13922          7 LSLQVLALVSLPQLF----DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV   79 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i   79 (509)
                      .++.+....+.+..+    |.|+  .|+.+.+++.+.+..   . ..+|++..|.+++|+++++++++++|++++++ +|
T Consensus        15 ~~~~~~~~~~~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~---~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i   90 (387)
T PRK08912         15 IFEVMSQLAREHGAINLGQGFPDDPGPEDVRRAAADALLD---G-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEV   90 (387)
T ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccE
Confidence            444445555544433    3444  467888888777654   2 34599999999999999999998889889998 99


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCc
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNP  159 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~  159 (509)
                      ++|+|+++++..++..++++||    +|+++.|+|..+...++..|++++.++.+++ +|.+|++.+++.+..     ++
T Consensus        91 ~~t~G~~~al~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~~  160 (387)
T PRK08912         91 MVTSGATEALAAALLALVEPGD----EVVLFQPLYDAYLPLIRRAGGVPRLVRLEPP-HWRLPRAALAAAFSP-----RT  160 (387)
T ss_pred             EEeCCcHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cCcCCHHHHHHHhCc-----cc
Confidence            9999999999999999999998    9999999999999999999999999998643 578999999998876     78


Q ss_pred             eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +++++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++. .+.++.++. +.     ..++|+++||||.
T Consensus       161 ~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-~~-----~~~~i~~~S~SK~  233 (387)
T PRK08912        161 KAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR-RHIPLMTLP-GM-----RERTVKIGSAGKI  233 (387)
T ss_pred             eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC-CCcChhhCC-Cc-----cCceEEEeechhh
Confidence            9999999999999999999999999999999999999999999988642 344444321 11     1358999999999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      | |++|+|+||++   +++++++.+.+.... ..+.+..                                  .|.++..
T Consensus       234 ~-g~~GlRiG~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~q~~~~~  275 (387)
T PRK08912        234 F-SLTGWKVGFVC---AAPPLLRVLAKAHQFLTFTTPPN----------------------------------LQAAVAY  275 (387)
T ss_pred             c-cCcCceeEEEe---cCHHHHHHHHHHHhhccccCChH----------------------------------HHHHHHH
Confidence            9 89999999998   799999998876552 2333433                                  2333333


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCC-CCcHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGK-CPSVLY  397 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~-~~~~~~  397 (509)
                      .+.          ...++.+++++.++++++.+.+.|+.. |+.+.+++|++|+|+++..          .+. .++.++
T Consensus       276 ~l~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~----------~~~~~~~~~~  334 (387)
T PRK08912        276 GLG----------KPDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAP----------LGLAEDDVAF  334 (387)
T ss_pred             HHh----------CCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccc----------cCCCCCHHHH
Confidence            221          012236788899999999999999998 8888899999999987751          011 245566


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +..+++++||.+.||..|+...                                              ++.+        
T Consensus       335 ~~~l~~~~gV~v~pg~~f~~~~----------------------------------------------~~~~--------  360 (387)
T PRK08912        335 CRRLVEEAGVAAIPVSAFYEED----------------------------------------------PVTS--------  360 (387)
T ss_pred             HHHHHhcCCEEEecchhhCCCC----------------------------------------------CCCC--------
Confidence            7777888999999999886510                                              2222        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~~  503 (509)
                      ++||+|+.+++.|++++++|++++++
T Consensus       361 ~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        361 VVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             EEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            99999998899999999999998753

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=4.8e-44  Score=370.63  Aligned_cols=361  Identities=25%  Similarity=0.409  Sum_probs=292.4

Q ss_pred             hHHHHHHHHhhc-CCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC
Q psy13922          5 FSLSLQVLALVS-LPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ   77 (509)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~   77 (509)
                      .+.+++++..+. .+..+    +.|.+  |+.+.+++.+.+..   . ...|++..|.+++|++++++++.++|+.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~---~-~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~   89 (387)
T PRK07683         14 ISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITE---N-YTSYTHNAGLLELRKAACNFVKDKYDLHYSPE   89 (387)
T ss_pred             ccHHHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            345566666654 23433    56665  46788888888875   2 34599999999999999999998889888998


Q ss_pred             -cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         78 -DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        78 -~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                       +|++|+|+++++..+++.++++||    .|+++.|+|..+...++..|++++.++.+++ +|.+|.+.+++.+..    
T Consensus        90 ~~I~~t~G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~----  160 (387)
T PRK07683         90 SEIIVTIGASEAIDIAFRTILEPGT----EVILPAPIYPGYEPIIRLCGAKPVFIDTRST-GFRLTAEALENAITE----  160 (387)
T ss_pred             CcEEEeCChHHHHHHHHHHhCCCCC----EEEEcCCCccchHHHHHHcCCEEEEeecCcc-cCCCCHHHHHHhcCc----
Confidence             999999999999999999999988    9999999999999999999999999998754 578899999998876    


Q ss_pred             CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       157 ~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                       ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++  ...++.++. +.     ..++|+++||
T Consensus       161 -~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~-~~-----~~~vi~~~s~  231 (387)
T PRK07683        161 -KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ--PHTSIAHFP-EM-----REKTIVINGL  231 (387)
T ss_pred             -CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC--CcCChhhcc-CC-----cCCeEEEeec
Confidence             78999999999999999999999999999999999999999999998754  233444431 11     2359999999


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      ||.| |+||+|+||++   +++++++++.+... ...+++.+                                  .|.+
T Consensus       232 SK~~-~~pGlRiG~i~---~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~  273 (387)
T PRK07683        232 SKSH-SMTGWRIGFLF---APSYLAKHILKVHQYNVTCASSI----------------------------------SQYA  273 (387)
T ss_pred             cccc-cCccceeEEEE---cCHHHHHHHHHHHHhccCCCChH----------------------------------HHHH
Confidence            9999 79999999998   79999999887654 23445555                                  5555


Q ss_pred             hhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcH
Q psy13922        316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSV  395 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~  395 (509)
                      +..++..          ...++++.++.++++++.+.+.|.+. ++.+.++++++|+|+.+..          .+ .++.
T Consensus       274 ~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~----------~~-~~~~  331 (387)
T PRK07683        274 ALEALTA----------GKDDAKMMRHQYKKRRDYVYNRLISM-GLDVEKPTGAFYLFPSIGH----------FT-MSSF  331 (387)
T ss_pred             HHHHHhC----------ChHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCeeEEEEEeccc----------CC-CCHH
Confidence            5555431          11236778889999999999999987 8888899999999976651          01 1345


Q ss_pred             HHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCC
Q psy13922        396 LYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPG  475 (509)
Q Consensus       396 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      .++..+++++||.++||..|+.                                                .+.+      
T Consensus       332 ~~~~~ll~~~gI~v~pg~~f~~------------------------------------------------~~~~------  357 (387)
T PRK07683        332 DFALDLVEEAGLAVVPGSAFSE------------------------------------------------YGEG------  357 (387)
T ss_pred             HHHHHHHHhCCEEEcCchhhCC------------------------------------------------CCCC------
Confidence            5667888999999999998875                                                3333      


Q ss_pred             ceeEEEEeecChHHHHHHHHHHHHHHHH
Q psy13922        476 TYHFRTTILPQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       476 ~~~~Rls~~~~~~~i~~~~~~l~~~~~~  503 (509)
                        +|||+++.+++++++++++|.+++++
T Consensus       358 --~~Ri~~~~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        358 --YVRLSYAYSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             --eEEEEecCCHHHHHHHHHHHHHHHHh
Confidence              99999999999999999999998863

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=3.7e-44  Score=366.72  Aligned_cols=333  Identities=22%  Similarity=0.363  Sum_probs=271.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      |+.+.+++.+....     ..+|+++.|.++||+++++++.+++|++++++ +|++|+|+++++..++..++++|| +++
T Consensus        15 ~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~-~~d   88 (350)
T TIGR03537        15 PPFIRKALIDAVPE-----VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEE-DRR   88 (350)
T ss_pred             CHHHHHHHHHHHhc-----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCC-CCc
Confidence            56788888776432     45699999999999999999999999999998 999999999999999999998873 334


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|..+...++..|++++.++.+++++|.+|++.+++++.+     +++++++++||||||.+++.+++++|++
T Consensus        89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~NPtG~~~~~~~~~~l~~  163 (350)
T TIGR03537        89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE-----ETKIVWINYPHNPTGATAPRSYLKETIA  163 (350)
T ss_pred             eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh-----ccEEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            99999999999999999999999999997666788999999999877     7999999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|++||+||+|.++.++.  ...++....        ..++|+++|+||.+ |++|+|+||++   +++.+++.+.
T Consensus       164 ~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~--------~~~~i~~~s~SK~~-g~~GlRiG~~~---~~~~~~~~~~  229 (350)
T TIGR03537       164 MCREHGIILCSDECYTEIYFGE--PPHSALEVG--------IENVLAFHSLSKRS-GMTGYRSGFVA---GDEKLISFLR  229 (350)
T ss_pred             HHHHcCcEEEEeccccccccCC--CCCchhhcC--------cCCEEEEeeccccc-CCccccceeee---cCHHHHHHHH
Confidence            9999999999999999987643  233333321        23599999999999 89999999998   8999999998


Q ss_pred             Hhhhcc-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHH
Q psy13922        266 KSISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL  344 (509)
Q Consensus       266 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (509)
                      .....+ .+++.+                                  .|.++..++.        .+   +++++.++.+
T Consensus       230 ~~~~~~~~~~~~~----------------------------------~q~~~~~~l~--------~~---~~~~~~r~~l  264 (350)
T TIGR03537       230 KLRANFGVASPDF----------------------------------VQAAAKAAWS--------DD---NHVLERRKIF  264 (350)
T ss_pred             HHHHhhccCCCHH----------------------------------HHHHHHHHhC--------Cc---HHHHHHHHHH
Confidence            876532 233333                                  3333333322        02   2366778899


Q ss_pred             HHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcccc
Q psy13922        345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF  424 (509)
Q Consensus       345 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~  424 (509)
                      +++++.+.+.|++. |+++.+|++++|+|++++.           + .++..++..++ ++||.++||..|+.       
T Consensus       265 ~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~~-----------~-~~~~~l~~~L~-~~gv~v~~g~~f~~-------  323 (350)
T TIGR03537       265 KRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVPS-----------G-IDAKDYALRLL-ENGIVVAPGENFGS-------  323 (350)
T ss_pred             HHHHHHHHHHHHHC-CCcccCCCeEEEEEEECCC-----------C-CCHHHHHHHHH-HCCEEEcCchhhCC-------
Confidence            99999999999988 8888899999999987751           1 13455555554 57999999998865       


Q ss_pred             ccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       425 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                               .+.+        +||++++.+++++++++++|++
T Consensus       324 -----------------------------------------~~~~--------~~Ri~~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       324 -----------------------------------------GEEG--------YVRVALVPTLEECEEALRLWER  349 (350)
T ss_pred             -----------------------------------------CCCC--------EEEEEecCCHHHHHHHHHHHhc
Confidence                                                     2223        8999999889999999999875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.8e-44  Score=369.76  Aligned_cols=349  Identities=19%  Similarity=0.304  Sum_probs=283.1

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCC-CCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD-WQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|++  |+.+.+++.+.+..   .....|++..|.+++|+++++++.+++|.+++ +++|++|+|+++++..++..+++
T Consensus        35 g~~~~~~~~~~~~a~~~~~~~---~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~  111 (389)
T PRK05957         35 GVVSYPPPPEAIEALNNFLAN---PENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITD  111 (389)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcC
Confidence            45544  67888999888765   23356999999999999999999988898777 77999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|..+...++..|++++.++.+.  +|.+|++.+++.++.     ++++|++++||||||.++|.+
T Consensus       112 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~-----~~klv~~~~p~NPtG~~~~~~  180 (389)
T PRK05957        112 PGD----EIILNTPYYFNHEMAITMAGCQPILVPTDD--NYQLQPEAIEQAITP-----KTRAIVTISPNNPTGVVYPEA  180 (389)
T ss_pred             CCC----EEEEeCCCCcCHHHHHHhcCCEEEEeecCC--CCCcCHHHHHHhcCc-----CceEEEEeCCCCCCCcCcCHH
Confidence            988    999999999999888899999999998763  468999999999876     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. ...+...+. +     ...++|+++||||.| |++|+|+||++   .++
T Consensus       181 ~~~~i~~~a~~~~~~li~De~y~~~~~~~~-~~~~~~~~~-~-----~~~~~i~~~S~SK~~-g~~GlRiG~~~---~~~  249 (389)
T PRK05957        181 LLRAVNQICAEHGIYHISDEAYEYFTYDGV-KHFSPGSIP-G-----SGNHTISLYSLSKAY-GFASWRIGYMV---IPI  249 (389)
T ss_pred             HHHHHHHHHHHcCcEEEEeccchhccCCCC-CccChhhCC-C-----ccCcEEEEecchhhc-cCccceeEEEe---cCH
Confidence            999999999999999999999999988632 223333321 1     134599999999999 79999999998   789


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++++...... ..+++.+                                  .|.++..++..          ...++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~----------~~~~~  285 (389)
T PRK05957        250 HLLEAIKKIQDTILICPPVV----------------------------------SQYAALGALQV----------GKSYC  285 (389)
T ss_pred             HHHHHHHHHHhhcccCCCcH----------------------------------HHHHHHHHHhC----------ChHHH
Confidence            999999887653 3345555                                  45444433331          01225


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCC-eeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGM-SCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ++.++.++++++.+.+.|++++++ .+.+++|++|+|+++..           ++ ++.+++.++++++||.++||+.|+
T Consensus       286 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~-----------~~-~~~~~~~~l~~~~gv~v~pg~~f~  353 (389)
T PRK05957        286 QQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNT-----------DL-NDFELVKQLIREYRVAVIPGTTFG  353 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCC-----------CC-ChHHHHHHHHHHCCEEEccchhhC
Confidence            556677899999999999988664 67789999999987751           22 356667788888999999999886


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLE  495 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~  495 (509)
                      .                                                .+.+        ++||+++ .++++++++++
T Consensus       354 ~------------------------------------------------~~~~--------~iRis~~~~~~~~l~~~~~  377 (389)
T PRK05957        354 M------------------------------------------------KNGC--------YLRIAYGALQKATAKEGIE  377 (389)
T ss_pred             C------------------------------------------------CCCC--------EEEEEEecCCHHHHHHHHH
Confidence            6                                                3333        9999998 68999999999


Q ss_pred             HHHHHHHHHHhh
Q psy13922        496 KFREFHEEFLAK  507 (509)
Q Consensus       496 ~l~~~~~~~~~~  507 (509)
                      +|.++++.+.++
T Consensus       378 ~l~~~~~~~~~~  389 (389)
T PRK05957        378 RLVQGLKTIVQQ  389 (389)
T ss_pred             HHHHHHHhhhcC
Confidence            999999887653

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=1.5e-43  Score=367.52  Aligned_cols=362  Identities=23%  Similarity=0.392  Sum_probs=289.2

Q ss_pred             HHHHHHHhh-cCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-Cc
Q psy13922          7 LSLQVLALV-SLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QD   78 (509)
Q Consensus         7 ~~~~~~~~~-~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~   78 (509)
                      .+++++.+. +.++.+    |.|++  |+.+.+++.+.+..   . ...|++..|.+++|++++++++.++|+.+++ ++
T Consensus        18 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~   93 (391)
T PRK07309         18 LIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDA---N-QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENE   93 (391)
T ss_pred             HHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            456666543 334544    44554  66788888877765   2 3459999999999999999999888987775 68


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCC
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN  158 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~  158 (509)
                      |++|+|+++++.+++..++++||    +|+++.|+|.++...++..|.+++.++.++ .+|.+|++.+++.+++..  .+
T Consensus        94 i~it~G~~~al~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~  166 (391)
T PRK07309         94 ILVTIGATEALSASLTAILEPGD----KVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEMLEKAILEQG--DK  166 (391)
T ss_pred             EEEeCChHHHHHHHHHHhcCCCC----EEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHHHHHHHhhccC--CC
Confidence            99999999999999999999988    999999999999999999999999999764 357899999999987521  15


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      +++|++++||||||.+++.+++++|+++|++||+++|+|++|.++.+++. .+.++.++..        .++|+++||||
T Consensus       167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~--------~~~i~~~S~SK  237 (391)
T PRK07309        167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE-PHVSIAEYLP--------DQTILINGLSK  237 (391)
T ss_pred             eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC-CCCCHHHhcc--------CCEEEEecChh
Confidence            89999999999999999999999999999999999999999999998542 3445554422        24999999999


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      .| |++|+|+||++   +++++++.+..... ...+++.+                                  .|.++.
T Consensus       238 ~~-g~~GlRvG~~v---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~  279 (391)
T PRK07309        238 SH-AMTGWRIGLIF---APAEFTAQLIKSHQYLVTAATTM----------------------------------AQFAAV  279 (391)
T ss_pred             hc-cCccceeEEEE---eCHHHHHHHHHHHhhcccCCChH----------------------------------HHHHHH
Confidence            99 79999999998   79999999987654 33456666                                  455555


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCC-CcHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKC-PSVL  396 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~-~~~~  396 (509)
                      .++..     +.+     +....++.++++++.+.+.|++. ++.+.+|++++|+|++++  .         +.. ++.+
T Consensus       280 ~~l~~-----~~~-----~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l~--~---------~~~~~~~~  337 (391)
T PRK07309        280 EALTN-----GKD-----DALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKIP--A---------GYNQDSFK  337 (391)
T ss_pred             HHHhC-----Chh-----HHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEECC--C---------CCCCCHHH
Confidence            55441     111     13456778888999999999988 888889999999997664  1         221 3455


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ++.++++++||.+.||..|+.                                                .+.+       
T Consensus       338 ~~~~l~~~~gv~v~pg~~f~~------------------------------------------------~~~~-------  362 (391)
T PRK07309        338 FLQDFARKKAVAFIPGAAFGP------------------------------------------------YGEG-------  362 (391)
T ss_pred             HHHHHHHhCCEEEeCchhhCC------------------------------------------------CCCC-------
Confidence            566788889999999998876                                                3334       


Q ss_pred             eeEEEEeecChHHHHHHHHHHHHHHHHH
Q psy13922        477 YHFRTTILPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       477 ~~~Rls~~~~~~~i~~~~~~l~~~~~~~  504 (509)
                       +||++++.+++++++++++|+++++++
T Consensus       363 -~iRi~~~~~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        363 -YVRLSYAASMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             -EEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence             999999988999999999999998654

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=4.1e-44  Score=371.47  Aligned_cols=346  Identities=21%  Similarity=0.350  Sum_probs=282.2

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+.+++.+.+..   . ...|++..|.+++|++++++++.++|+.+++++|++|+|+++++..++..++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~  113 (388)
T PRK07337         38 GEPDFTAPEPVVEAAARALRR---G-VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVER  113 (388)
T ss_pred             cCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCC
Confidence            56665  56888888887765   3 345999999999999999999998998899999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|++++.++.+++.+|.+|++.+++.+.+     ++++|++++||||||.+++.++
T Consensus       114 gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~  184 (388)
T PRK07337        114 GD----EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE-----RTRGVLLASPSNPTGTSIAPDE  184 (388)
T ss_pred             CC----EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc-----cceEEEEECCCCCCCcCcCHHH
Confidence            88    99999999999999999999999999998766789999999998876     7899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++++++|+||+|.++.+.+.  ..+...+         ..++|+++||||.+ |++|+|+||++   .+++
T Consensus       185 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~---------~~~vi~~~S~SK~~-~~~G~RiG~~~---~~~~  249 (388)
T PRK07337        185 LRRIVEAVRARGGFTIVDEIYQGLSYDAA--PVSALSL---------GDDVITINSFSKYF-NMTGWRLGWLV---VPEA  249 (388)
T ss_pred             HHHHHHHHHHCCCEEEEeccccccccCCC--CcChhhc---------cCCEEEEEechhhc-CCchhheeeee---cCHH
Confidence            99999999999999999999999887542  2333322         12489999999999 79999999998   7889


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+.+... ...+.+.+                                  .|.++..++.     ++    ...+.+
T Consensus       250 l~~~l~~~~~~~~~~~s~~----------------------------------~q~~~~~~l~-----~~----~~~~~~  286 (388)
T PRK07337        250 LVGTFEKLAQNLFICASAL----------------------------------AQHAALACFE-----PD----TLAIYE  286 (388)
T ss_pred             HHHHHHHHHHHhccCCChH----------------------------------HHHHHHHHhc-----cC----chHHHH
Confidence            9999988765 33456666                                  4555444443     11    112356


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCee-ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +.++.++++++.+.+.|+++ ++.+ ..|++|+|+|++++...       +.+..++.+++..+++++||.+.||..|+.
T Consensus       287 ~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~  358 (388)
T PRK07337        287 RRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVA-------HPAAGDSAALTQAMLHDAGVVLVPGRDFGP  358 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEeccccc-------CCCCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence            77889999999999999987 7664 46889999998875100       001224566677888999999999998875


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                      .                                               .+.+        ||||+++.++++|++++++|
T Consensus       359 ~-----------------------------------------------~~~~--------~~Ri~~~~~~~~l~~~l~rl  383 (388)
T PRK07337        359 H-----------------------------------------------APRD--------YIRLSYATSMSRLEEAVARL  383 (388)
T ss_pred             C-----------------------------------------------CCCC--------EEEEEecCCHHHHHHHHHHH
Confidence            1                                               1223        99999998899999999999


Q ss_pred             HHHH
Q psy13922        498 REFH  501 (509)
Q Consensus       498 ~~~~  501 (509)
                      .+++
T Consensus       384 ~~~l  387 (388)
T PRK07337        384 GKLF  387 (388)
T ss_pred             HHHh
Confidence            8865

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=8.6e-44  Score=370.69  Aligned_cols=346  Identities=26%  Similarity=0.421  Sum_probs=281.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+++++.+.+..   .....|++..|.+++|++++++++.++++.+++++|++|+|+++++.+++.+++++||    +
T Consensus        50 ~~~~~~~~~~~l~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd----~  122 (403)
T TIGR01265        50 DPEAEEAVKDALRS---GKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGA----N  122 (403)
T ss_pred             CHHHHHHHHHHHhc---CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCC----E
Confidence            56888888888876   3445699999999999999999998788888899999999999999999999998888    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..+...++..|.+++.++.+++.+|.+|++.+++.+..     +++++++++||||||.+++.+++++|+++
T Consensus       123 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~v~i~~p~NPtG~~~~~~~~~~i~~~  197 (403)
T TIGR01265       123 ILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE-----KTVAIVVINPSNPCGSVFSRDHLQKIAEV  197 (403)
T ss_pred             EEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc-----CccEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999887666788999999998876     78999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-H-----H
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-G-----V  260 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~-----~  260 (509)
                      |+++|++||+|++|.++.+++. .+.++.++..       ..++|+++||||.| |+||+|+||++.  .++ +     +
T Consensus       198 a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-------~~~vi~~~S~SK~~-~~pGlRiG~~v~--~~~~~~~~~~~  266 (403)
T TIGR01265       198 ARKLGIPIIADEIYGHMVFGDA-PFIPMASFAS-------IVPVLSLGGISKRW-VVPGWRLGWIII--HDPHGIFRDTV  266 (403)
T ss_pred             HHHCCCEEEEEccccccccCCC-Cccchhhhcc-------CCcEEEEeeccccc-CCCcceEEEEEE--eCchhhhHHHH
Confidence            9999999999999999988642 4455555432       23499999999999 799999999983  322 2     4


Q ss_pred             HHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHH
Q psy13922        261 KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSV  340 (509)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  340 (509)
                      ++.+........+++.+                                  .|.++..++.         +....++++.
T Consensus       267 ~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~---------~~~~~~~~~~  303 (403)
T TIGR01265       267 LQGLKNLLQRILGPATI----------------------------------VQGALPDILE---------NTPQEFFDGK  303 (403)
T ss_pred             HHHHHHHhhhhcCCChH----------------------------------HHHHHHHHHH---------hChHHHHHHH
Confidence            45555544333456666                                  5666655543         1122347888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCC
Q psy13922        341 LDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPG  420 (509)
Q Consensus       341 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~  420 (509)
                      ++.++++++.+.+.|+.++++.+..|.+|+|+|++++...  .     .+..++.+++..+++++||.+.||..|+.   
T Consensus       304 ~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~-----~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---  373 (403)
T TIGR01265       304 ISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELEL--F-----PEIKDDVDFCEKLVREESVICLPGSAFGL---  373 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccc--c-----CCCCCHHHHHHHHHHhCCEEEeCccccCC---
Confidence            8999999999999999988888778999999998775210  0     01224566677778899999999998865   


Q ss_pred             ccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHH
Q psy13922        421 TYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF  500 (509)
Q Consensus       421 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~  500 (509)
                                                                   ++          ++|++++.+++.|++++++|+++
T Consensus       374 ---------------------------------------------~~----------~iRis~~~~~~~l~~~l~~l~~~  398 (403)
T TIGR01265       374 ---------------------------------------------PN----------WVRITITVPESMLEEACSRIKEF  398 (403)
T ss_pred             ---------------------------------------------CC----------eEEEEecCCHHHHHHHHHHHHHH
Confidence                                                         44          99999998899999999999998


Q ss_pred             HHH
Q psy13922        501 HEE  503 (509)
Q Consensus       501 ~~~  503 (509)
                      +++
T Consensus       399 ~~~  401 (403)
T TIGR01265       399 CER  401 (403)
T ss_pred             HHh
Confidence            864

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-43  Score=373.05  Aligned_cols=351  Identities=20%  Similarity=0.324  Sum_probs=293.0

Q ss_pred             CCCCCCHHHHHH-HHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC
Q psy13922         22 DDPRFPDDVKQR-AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a-~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g  100 (509)
                      +...||....+. +.+.++.........|.++.|.++||+++++++....|+.+++++|++|+|+++|+.++++.++++|
T Consensus       100 ~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pG  179 (459)
T COG1167         100 DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPG  179 (459)
T ss_pred             CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCC
Confidence            344578765555 4555554433435669999999999999999999788999999999999999999999999999999


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEE-eCCCCCCCCCCCHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI-INPGNPTGQVLTKEN  179 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi-~~p~NPtG~~~s~~~  179 (509)
                      |    +|++++|+|.+...+++..|++++.||.+++   ++|++.|++.++..    ++|++|+ ++.|||||.+||.+.
T Consensus       180 d----~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~---G~~~e~le~~~~~~----~~k~~y~~P~~qNPtG~tms~~r  248 (459)
T COG1167         180 D----TVLVEDPTYPGALQALEALGARVIPVPVDED---GIDPEALEEALAQW----KPKAVYVTPTFQNPTGVTMSLER  248 (459)
T ss_pred             C----EEEEcCCCcHHHHHHHHHcCCcEEecCCCCC---CCCHHHHHHHHhhc----CCcEEEECCCCCCCCCCccCHHH
Confidence            9    9999999999999999999999999999977   89999999999986    7999997 699999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      .++|++||++||++||+||.|++|.+++. +.+++..++.       ..+||+++||||+++  ||+|+||++   ++++
T Consensus       249 R~~Ll~lA~~~~~~IIEDD~y~el~~~~~-p~~~l~~ld~-------~~rViy~gSFSK~l~--PglRlG~vv---~p~~  315 (459)
T COG1167         249 RKALLALAEKYDVLIIEDDYYGELRYDGP-PPPPLKALDA-------PGRVIYLGSFSKTLA--PGLRLGYVV---APPE  315 (459)
T ss_pred             HHHHHHHHHHcCCeEEeeCcchhhhcCCC-CCCChHhhCC-------CCCEEEEeeehhhcc--cccceeeee---CCHH
Confidence            99999999999999999999999999854 3445665543       346999999999996  999999999   8999


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+..... ...+++.+                                  .|.++...+.     ++.|++   |++
T Consensus       316 ~~~~~~~~k~~~~~~~s~~----------------------------------~Q~~la~~l~-----~G~~~~---hl~  353 (459)
T COG1167         316 LIEKLLRLKQAADLGPSSL----------------------------------SQAALAAFLL-----SGHYDR---HLR  353 (459)
T ss_pred             HHHHHHHHHHHhcCCCChH----------------------------------HHHHHHHHHH-----cCCHHH---HHH
Confidence            9999988777 56677777                                  6666666655     333444   489


Q ss_pred             HHHHHHHHHHHHHHHHHhcC-C-CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec-CCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSI-E-GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP-GAGF  415 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p-g~~f  415 (509)
                      ++++.++++++.+.+.|.+. + .+.+..|.||+|+|+++.-+           + ++.. +...+.++|+.+.| |..|
T Consensus       354 ~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~-----------~-~~~~-l~~~a~~~gv~i~~~g~~f  420 (459)
T COG1167         354 RLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG-----------I-DARE-LLAAALEKGVVVTPLGSAF  420 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCC-----------C-CHHH-HHHHHHHCCCEEEcCCccc
Confidence            99999999999999999995 4 57788999999999877622           2 2344 45666677999999 8888


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAML  494 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~  494 (509)
                      ....                                              ....        +||++|+ .+.+++++++
T Consensus       421 ~~~~----------------------------------------------~~~~--------~~Rl~~s~~~~e~i~~gi  446 (459)
T COG1167         421 SADG----------------------------------------------DPRN--------GLRLSFSSPSEEEIEEGI  446 (459)
T ss_pred             cCCC----------------------------------------------CCCC--------eEEEEcCCCCHHHHHHHH
Confidence            7721                                              1122        8999999 7899999999


Q ss_pred             HHHHHHHHHHH
Q psy13922        495 EKFREFHEEFL  505 (509)
Q Consensus       495 ~~l~~~~~~~~  505 (509)
                      ++|.+++.+..
T Consensus       447 ~~l~~~~~~~~  457 (459)
T COG1167         447 KRLAALLREAA  457 (459)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=4.6e-44  Score=373.42  Aligned_cols=340  Identities=20%  Similarity=0.296  Sum_probs=269.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhccc-CCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCR-GQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~-~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.|++  |+.+.+++.+++.... ......|+++.|.++||+++++++.+.+|+++++++|++|+|+++++.+++ .++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~~  120 (409)
T PRK07590         42 GDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIFG  120 (409)
T ss_pred             cCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-HhcC
Confidence            56665  5778888888887632 123456999999999999999999888899999999999999999999875 4567


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCE-----------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNME-----------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      +||    +|+++.|+|..|...++..|.+           ++.++++++++|.+|++.      +     ++++|++++|
T Consensus       121 ~gd----~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~-----~~k~i~l~nP  185 (409)
T PRK07590        121 PDN----TIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------E-----KVDIIYLCFP  185 (409)
T ss_pred             CCC----EEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------c-----CceEEEEeCC
Confidence            888    9999999999999999999987           899998766567666432      2     7999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      |||||.++|.+++++|+++|+++|++||+||+|.+|.+++. ...++.++.. .     ..++|+++||||.| |+||+|
T Consensus       186 ~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~~-~-----~~~vi~~~SfSK~~-~~pGlR  257 (409)
T PRK07590        186 NNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS-LPHSIYEIEG-A-----RECAIEFRSFSKTA-GFTGTR  257 (409)
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC-CCcchhhCCC-c-----ccceEEEecCcccc-CCcCce
Confidence            99999999999999999999999999999999999987542 2334444311 0     22489999999999 799999


Q ss_pred             eEEEeeecCCHHHHHHH------------HHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc
Q psy13922        248 GGYSEVINLDPGVKAML------------HKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT  314 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (509)
                      +||++   +++++++.+            ..... .+.+++.+                                  .|.
T Consensus       258 iG~~i---~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------------------------~q~  300 (409)
T PRK07590        258 CAYTV---VPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYI----------------------------------VQR  300 (409)
T ss_pred             eEEEE---cCHHHhhhccccchhhhHHHHHHHHhhcccCcCHH----------------------------------HHH
Confidence            99998   788888732            11111 23345666                                  555


Q ss_pred             hhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCc
Q psy13922        315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPS  394 (509)
Q Consensus       315 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~  394 (509)
                      ++..++..         ...++++++++.++++++.+.+.|+.. ++.+.++.+++|+|++++.           + .++
T Consensus       301 a~~~~l~~---------~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~-----------~-~~~  358 (409)
T PRK07590        301 AAEAVYSP---------EGKAQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPD-----------G-MSS  358 (409)
T ss_pred             HHHHHhcC---------CcHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCcceEEEEECCC-----------C-CCH
Confidence            55554431         112457888999999999999999998 7888888999999988751           1 134


Q ss_pred             HHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCC
Q psy13922        395 VLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVP  474 (509)
Q Consensus       395 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (509)
                      .+++..+++++||.++||..|+.                                                .+.+     
T Consensus       359 ~~~~~~l~~~~gv~v~pg~~f~~------------------------------------------------~~~~-----  385 (409)
T PRK07590        359 WDFFDKLLQEANVVGTPGSGFGP------------------------------------------------SGEG-----  385 (409)
T ss_pred             HHHHHHHHHHCCEEEeChhHhCC------------------------------------------------CCCC-----
Confidence            55667788889999999998865                                                3434     


Q ss_pred             CceeEEEEeecChHHHHHHHHHHHHH
Q psy13922        475 GTYHFRTTILPQPEKLKAMLEKFREF  500 (509)
Q Consensus       475 ~~~~~Rls~~~~~~~i~~~~~~l~~~  500 (509)
                         ++||+++.+++++++++++|+++
T Consensus       386 ---~iRi~~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        386 ---YFRLSAFGSRENVLEAMERIKKA  408 (409)
T ss_pred             ---EEEEEccCCHHHHHHHHHHHHhh
Confidence               99999888999999999999875

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=364.55  Aligned_cols=354  Identities=18%  Similarity=0.275  Sum_probs=271.3

Q ss_pred             hHHHHHHHHhhcCC---CCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCC
Q psy13922          5 FSLSLQVLALVSLP---QLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD   75 (509)
Q Consensus         5 ~~~~~~~~~~~~~~---~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~   75 (509)
                      ..-++.++.....+   .++    |.|.+  |+.+.+++.+...     ....|+++.|.++||+++++++++++|.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-----~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~   82 (374)
T PRK05839          8 FEKLRELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAH-----LLNKYPKSAGEESLREAQRGFFKRRFKIELK   82 (374)
T ss_pred             HHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhh-----ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence            34456666655444   232    56665  4556666655432     2556999999999999999999999998899


Q ss_pred             CCcEEEeCCHHHHHHHHHHHhh--cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhh
Q psy13922         76 WQDVILSAGASDGIKSVLKLLI--EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA  153 (509)
Q Consensus        76 ~~~i~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~  153 (509)
                      +++|++|+|+++++..++..++  .+||    .|+++.|+|..|...++..|++++.++.+++++|.+|+...+  + + 
T Consensus        83 ~~~I~it~G~~~al~~~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~-  154 (374)
T PRK05839         83 ENELIPTFGTREVLFNFPQFVLFDKQNP----TIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-Q-  154 (374)
T ss_pred             cceEEEecCcHHHHHHHHHHHhcCCCCC----EEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-c-
Confidence            9999999999999999988875  4666    999999999999999999999999999987767877765442  2 2 


Q ss_pred             hccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEE
Q psy13922        154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASF  233 (509)
Q Consensus       154 ~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i  233 (509)
                          ++++|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++  .+.++.......+ .....++|++
T Consensus       155 ----~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~--~~~s~~~~~~~~~-~~~~~~vi~~  227 (374)
T PRK05839        155 ----EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT--PPPSLLEASILVG-NESFKNVLVI  227 (374)
T ss_pred             ----cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC--CCCCHhhhhcccC-ccccCcEEEE
Confidence                69999999999999999999999999999999999999999999986532  3344433211100 0112469999


Q ss_pred             EecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccc
Q psy13922        234 MSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG  312 (509)
Q Consensus       234 ~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (509)
                      +||||.| |+||+|+||++   +++++++++.+.... ..+.+.+                                  .
T Consensus       228 ~SfSK~~-~~~GlRiG~ii---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~  269 (374)
T PRK05839        228 NSISKRS-SAPGLRSGFIA---GDASILKKYKAYRTYLGCASPLP----------------------------------L  269 (374)
T ss_pred             ecccccc-CCccceeEEEe---cCHHHHHHHHHHHhhcCCCCChH----------------------------------H
Confidence            9999999 79999999998   789999999877542 3455555                                  4


Q ss_pred             cchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCC
Q psy13922        313 QTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKC  392 (509)
Q Consensus       313 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~  392 (509)
                      |.++..++..           .++++++++.++++++.+.+.|    ++.  .|.+++|+|++++               
T Consensus       270 q~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~---------------  317 (374)
T PRK05839        270 QKAAAVAWLD-----------DEHAEFFRNIYAKNLKLAREIL----GIT--IPPATFYVWLPVD---------------  317 (374)
T ss_pred             HHHHHHHhcc-----------chHHHHHHHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCC---------------
Confidence            5444433321           1236777888888888887765    333  6789999998764               


Q ss_pred             CcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCC
Q psy13922        393 PSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQ  472 (509)
Q Consensus       393 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (509)
                      ++.+++.++++++||.++||..|+...                                              .+.+   
T Consensus       318 ~~~~~~~~l~~~~gi~v~pg~~f~~~~----------------------------------------------~~~~---  348 (374)
T PRK05839        318 NDEEFTKKLYQNEGIKVLPGSFLGRNG----------------------------------------------IGKG---  348 (374)
T ss_pred             ChHHHHHHHHHHCCEEEeCchhhCCCC----------------------------------------------CCCC---
Confidence            245567777778999999998876510                                              1122   


Q ss_pred             CCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        473 VPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       473 ~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                           |+|||++.+++++++++++|+++++
T Consensus       349 -----~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        349 -----YVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             -----eEEEEecCCHHHHHHHHHHHHHHhh
Confidence                 9999999889999999999999875

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=1.9e-43  Score=366.38  Aligned_cols=364  Identities=21%  Similarity=0.307  Sum_probs=290.1

Q ss_pred             HHHHHHHhhcCCCCC----CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cE
Q psy13922          7 LSLQVLALVSLPQLF----DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV   79 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i   79 (509)
                      .++.+++.+..+..+    |.|.  .|+.+.+++.+.+..   . ..+|++..|.+++|+++++++.+.+|++.+++ +|
T Consensus        13 ~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i   88 (387)
T PRK07777         13 IFAEMSALAVRTGAVNLGQGFPDEDGPPEMLEAAQEAIAG---G-VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEV   88 (387)
T ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcE
Confidence            567777777655544    3444  467788888777765   2 35599999999999999999998889888886 79


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCC-CCCCCCHHHHHHHHHhhhccCC
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES-KQWGLPISELERSITEARKHCN  158 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~~  158 (509)
                      ++|+|+++++.+++..++++||    +|+++.|+|..+...++..|.+++.++.+++ .+|.+|++.|++.+.+     +
T Consensus        89 ~~t~G~~~al~~~~~~~~~~gd----~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~  159 (387)
T PRK07777         89 LVTVGATEAIAAAVLGLVEPGD----EVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP-----R  159 (387)
T ss_pred             EEeCCcHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc-----c
Confidence            9999999999999999998888    9999999999999999999999999998765 4688999999998876     7


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      +++|++++||||||.+++.+++++|+++|+++++++|+||+|.++.+.+. .+.++.++. +.     ..++|+++||||
T Consensus       160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~-~~-----~~~~i~~~S~SK  232 (387)
T PRK07777        160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA-RHLPLATLP-GM-----RERTVTISSAAK  232 (387)
T ss_pred             cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC-CcccHhhCC-CC-----cCcEEEEeechh
Confidence            89999999999999999999999999999999999999999999988543 334444321 11     234899999999


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      .| |++|+|+||++   +++++++.+.+... .....+.+                                  .|.++.
T Consensus       233 ~~-g~~GlRiG~~~---~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~  274 (387)
T PRK07777        233 TF-NVTGWKIGWAC---GPAPLIAAVRAAKQYLTYVGGAP----------------------------------FQPAVA  274 (387)
T ss_pred             hc-cCcCceeEEEe---cCHHHHHHHHHHHhhcccCCCCH----------------------------------HHHHHH
Confidence            99 79999999998   79999998887654 22334444                                  333333


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .++..          ..++++++++.++++++.+.+.|++. ++++.++++++|+|++++.          .+..++.++
T Consensus       275 ~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~  333 (387)
T PRK07777        275 HALDH----------EDAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRP----------LGYDDGTEF  333 (387)
T ss_pred             HHHhC----------CcHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEecccc----------cCCCCHHHH
Confidence            33321          12347788899999999999999998 8888899999999977641          022245677


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +..+++++||.+.||..|+....                                             .+.+        
T Consensus       334 ~~~l~~~~gv~v~pg~~f~~~~~---------------------------------------------~~~~--------  360 (387)
T PRK07777        334 CRALPERVGVAAIPMSVFYDPAD---------------------------------------------AWNH--------  360 (387)
T ss_pred             HHHHHHhCCEEEeCchHhCCCCc---------------------------------------------CCCC--------
Confidence            77777889999999998865100                                             1122        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                      +|||+++.+++++++++++|+++..
T Consensus       361 ~~Ri~~~~~~~~l~~~l~~l~~~~~  385 (387)
T PRK07777        361 LVRFAFCKRDDTLDEAIRRLRALRG  385 (387)
T ss_pred             eEEEEecCCHHHHHHHHHHHHHHhc
Confidence            8999999999999999999998753

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.3e-44  Score=370.23  Aligned_cols=319  Identities=18%  Similarity=0.234  Sum_probs=256.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCCC-cEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQ-DVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~   97 (509)
                      |.|++  |+.+++++.+.+..   .....|++ .|.++||+++++++++++|+. ++++ +|++|+|+++++..++++++
T Consensus        52 g~p~~~~~~~~~~~l~~~~~~---~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~  127 (410)
T PRK06290         52 GEPDEMADESVVEVLCEEAKK---PENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI  127 (410)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC
Confidence            56665  56788888776654   23445875 899999999999999988987 8887 79999999999999999999


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||    .|+++.|+|..|...++..|++++.++++++++|.+|++.+++.+..     ++++|++++||||||.++|.
T Consensus       128 ~~gd----~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~nP~NPTG~v~s~  198 (410)
T PRK06290        128 NPGD----VTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE-----KAKLLYLNYPNNPTGAVATK  198 (410)
T ss_pred             CCCC----EEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc-----cceEEEEECCCCCCCcCCCH
Confidence            9998    99999999999999999999999999998877788999999988876     79999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|++||++||+||+|.++.+++  .+.++.++.. .     ..++|+++||||.| |+||+|+||++   ++
T Consensus       199 e~l~~l~~la~~~~~~iI~DEaY~~~~~~~--~~~s~~~~~~-~-----~~~~I~i~SfSK~~-g~~GlRiG~ii---~~  266 (410)
T PRK06290        199 EFYEEVVDFAKENNIIVVQDAAYAALTFDG--KPLSFLSVPG-A-----KEVGVEIHSLSKAY-NMTGWRLAFVV---GN  266 (410)
T ss_pred             HHHHHHHHHHHHcCeEEEEecchhhceeCC--CCcChhcCCC-c-----cccEEEEeechhhc-CCchhheEeEE---eC
Confidence            999999999999999999999999998754  2344444311 0     12479999999999 79999999998   79


Q ss_pred             HHHHHHHHHhhhcc-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++++.+......+ .+++.+                                  .|.++..++..        .   ++
T Consensus       267 ~~l~~~l~~~~~~~~~~~~~~----------------------------------~q~aa~~~l~~--------~---~~  301 (410)
T PRK06290        267 ELIVKAFATVKDNNDSGQFIA----------------------------------IQKAGIYALDH--------P---EI  301 (410)
T ss_pred             HHHHHHHHHHHhccccCCcHH----------------------------------HHHHHHHHhhC--------c---HH
Confidence            99999998776532 334445                                  44454444431        1   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ++++++.++++++.+.+.|++. |+.+.+|+|+||+|++++-..  .   ...+..++.+++..++++.++.++||..|+
T Consensus       302 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~l~v~lp~~~--~---~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~  375 (410)
T PRK06290        302 TEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLYVKAPKGT--K---SGIKFENAEEFSQYLIKEKLISTVPWDDAG  375 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeEEEEECCCcc--c---cCCCCCCHHHHHHHHHHhCCEEEECCcccc
Confidence            6788899999999999999998 888888999999997765110  0   000112456777888888888888876543

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=1.6e-43  Score=368.26  Aligned_cols=344  Identities=27%  Similarity=0.446  Sum_probs=277.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+.+++.+.+..   . ...|++..|.++||++++++++..+|+.+++++|++|+|+++++..++.+++++||    .
T Consensus        48 ~~~~~~~~~~~~~~---~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd----~  119 (398)
T PRK08363         48 PEHMKEAYCRAIKE---G-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGD----E  119 (398)
T ss_pred             CHHHHHHHHHHHHc---C-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCC----E
Confidence            56888888888765   2 34599999999999999999999999999999999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..+...++..|.+++.++..++.+|.+|++.+++.+..     ++++|++++||||||.+++.+++++|+++
T Consensus       120 Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~  194 (398)
T PRK08363        120 ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE-----KTKAIAVINPNNPTGALYEKKTLKEILDI  194 (398)
T ss_pred             EEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc-----ceEEEEEECCCCCCCcCcCHHHHHHHHHH
Confidence            9999999999999999999999988433334678999999988876     68999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |+++|+++|+||+|.++.+.+  .+.++.++..       ..++++++||||.| |+||+|+||+++ .+++++++.+..
T Consensus       195 a~~~~~~li~Deay~~~~~~~--~~~~~~~~~~-------~~~vi~~~SfSK~~-~~~GlRiG~~~~-~~~~~~~~~l~~  263 (398)
T PRK08363        195 AGEHDLPVISDEIYDLMTYEG--KHVSPGSLTK-------DVPVIVMNGLSKVY-FATGWRLGYIYF-VDPEGKLAEVRE  263 (398)
T ss_pred             HHHcCeEEEEhhhhhhhccCC--cccCHHHcCc-------CCcEEEEecchhcc-CCccceEEEEEE-eCcHHHHHHHHH
Confidence            999999999999999988754  3344444321       23599999999999 799999999971 126667766654


Q ss_pred             hhh----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHH
Q psy13922        267 SIS----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLD  342 (509)
Q Consensus       267 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (509)
                      ...    ...+++.+                                  .|.++..++..          ..+++++.++
T Consensus       264 ~~~~~~~~~~~~s~~----------------------------------~q~~~~~~l~~----------~~~~l~~~~~  299 (398)
T PRK08363        264 AIDKLARIRLCPNTP----------------------------------AQFAAIAGLTG----------PMDYLEEYMK  299 (398)
T ss_pred             HHHHHhcccccCChH----------------------------------HHHHHHHHHhC----------ChHHHHHHHH
Confidence            432    12345555                                  45544444331          1234777889


Q ss_pred             HHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcc
Q psy13922        343 SLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTY  422 (509)
Q Consensus       343 ~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~  422 (509)
                      .++++++.+.+.|++++++.+..|+|++|+|++++.          ....++.+++.++++++||.++||..|+.     
T Consensus       300 ~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~----------~~~~~~~~~~~~~l~~~gV~v~~g~~f~~-----  364 (398)
T PRK08363        300 KLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEE----------GPWKDDKEFVLDVLHEAHVLFVHGSGFGE-----  364 (398)
T ss_pred             HHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEecc----------CCCCCHHHHHHHHHHhCCEEEeCchhhCC-----
Confidence            999999999999999888888889999999976651          00113455567888999999999998865     


Q ss_pred             ccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        423 HFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       423 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                                                                 .+.+        |+|++++.+++++++++++|+++++
T Consensus       365 -------------------------------------------~~~~--------~iRis~~~~~~~l~~~l~~l~~~~~  393 (398)
T PRK08363        365 -------------------------------------------YGAG--------HFRLVFLPPVEILEEAMDRFEEFMR  393 (398)
T ss_pred             -------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHHHHHHH
Confidence                                                       3333        9999999889999999999999887


Q ss_pred             HH
Q psy13922        503 EF  504 (509)
Q Consensus       503 ~~  504 (509)
                      ++
T Consensus       394 ~~  395 (398)
T PRK08363        394 ER  395 (398)
T ss_pred             Hh
Confidence            64

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=2.4e-43  Score=367.55  Aligned_cols=349  Identities=28%  Similarity=0.479  Sum_probs=272.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+.+++.+.+..     ...|+++.|.++||+++++++..+...++++++|++|+|+++++..++++++++||    +
T Consensus        51 ~~~i~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd----~  121 (404)
T PRK09265         51 PDEILRDVIRNLPT-----AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGD----E  121 (404)
T ss_pred             CHHHHHHHHHHhhc-----CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCC----E
Confidence            55777777766543     34599999999999999999986655578999999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..+...++..|.+++.++.+.+.+|.+|++.+++.+..     ++++|++++||||||.+++.+++++|+++
T Consensus       122 Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~P~NPtG~~~~~~~~~~i~~~  196 (404)
T PRK09265        122 VLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP-----RTKAIVIINPNNPTGAVYSKELLEEIVEI  196 (404)
T ss_pred             EEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc-----cceEEEEECCCCCCCcCCCHHHHHHHHHH
Confidence            9999999999999999999999999887666688999999998876     79999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH----HHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG----VKA  262 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~----~~~  262 (509)
                      |+++|++||+||+|.++.+++. .+.++.++..       +.++|+++||||.| |+||+|+||++. ..++.    +++
T Consensus       197 a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-------~~~vi~~~S~SK~~-~~pGlRiG~~v~-~~~~~~~~~~~~  266 (404)
T PRK09265        197 ARQHNLIIFADEIYDKILYDGA-VHISIASLAP-------DLLCVTFNGLSKAY-RVAGFRVGWMVL-SGPKKHAKGYIE  266 (404)
T ss_pred             HHHCCCEEEEehhhhhccCCCC-CcCCHHHcCC-------CceEEEEecchhhc-cCcccceEEEEE-eCchHHHHHHHH
Confidence            9999999999999999988642 3455555422       23589999999999 799999999972 22444    344


Q ss_pred             HHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHH
Q psy13922        263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLD  342 (509)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (509)
                      .+........+++.+                                  .|.++..++..       ++.+ ++..+.++
T Consensus       267 ~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~-------~~~~-~~~~~~~~  304 (404)
T PRK09265        267 GLDMLASMRLCANVP----------------------------------AQHAIQTALGG-------YQSI-NELILPGG  304 (404)
T ss_pred             HHHHHhccccCCCcH----------------------------------HHHHHHHHhcC-------chhH-HHHHHHHH
Confidence            443332233456666                                  55555555431       1111 11222234


Q ss_pred             HHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcc
Q psy13922        343 SLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTY  422 (509)
Q Consensus       343 ~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~  422 (509)
                      .+.++++.+.+.|++++++.+.+|++|+|+|++++...        .+..++.+++.+++.++||.+.||..|+.     
T Consensus       305 ~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~--------~~~~~~~~~~~~~l~~~gv~v~pg~~F~~-----  371 (404)
T PRK09265        305 RLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKV--------YPIHDDEQFVLDLLLQEKVLLVQGTGFNW-----  371 (404)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccc--------cCCCCHHHHHHHHHHhCCEEEECchhhCC-----
Confidence            56777899999998888888889999999998775210        01223455577899999999999998865     


Q ss_pred             ccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        423 HFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       423 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                                                                 .+.+        ++|++++.+++++++++++|+++++
T Consensus       372 -------------------------------------------~~~~--------~~Ri~~~~~~e~l~~~l~rl~~~l~  400 (404)
T PRK09265        372 -------------------------------------------PEPD--------HFRIVTLPRVDDLEEAIGRIGRFLS  400 (404)
T ss_pred             -------------------------------------------CCCC--------eEEEEeCCCHHHHHHHHHHHHHHHH
Confidence                                                       2223        9999999999999999999999887


Q ss_pred             HHH
Q psy13922        503 EFL  505 (509)
Q Consensus       503 ~~~  505 (509)
                      .+.
T Consensus       401 ~~~  403 (404)
T PRK09265        401 GYR  403 (404)
T ss_pred             Hhc
Confidence            553

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-43  Score=366.22  Aligned_cols=350  Identities=27%  Similarity=0.459  Sum_probs=287.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+.+++.+.+..   ... +|++..|.+.||+++++++.+.+|..+++++|++|+|+++++..++.+++++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~---~~~-~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~  114 (393)
T PRK05764         39 GEPDFDTPEHIKEAAIEALDD---GKT-KYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDP  114 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---CCC-CcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCC
Confidence            56665  47888888888775   333 4999999999999999999998888888999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..+...++.+|.+++.++.+++.+|.+|++.+++.+++     ++++|++++|+||||.++|.++
T Consensus       115 gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~NPtG~~~~~~~  185 (393)
T PRK05764        115 GD----EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP-----KTKALILNSPSNPTGAVYSPEE  185 (393)
T ss_pred             CC----EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc-----cceEEEEECCCCCCCcccCHHH
Confidence            88    99999999999999999999999999998666789999999999876     7899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++||+++|+||+|.++.+++. .+.++.++..+.     ..++++++||||.+ |++|+|+||++   ++++
T Consensus       186 ~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~-----~~~~i~~~s~SK~~-~~~G~RiG~i~---~~~~  255 (393)
T PRK05764        186 LEAIADVAVEHDIWVLSDEIYEKLVYDGA-EFTSIASLSPEL-----RDRTITVNGFSKAY-AMTGWRLGYAA---GPKE  255 (393)
T ss_pred             HHHHHHHHHHCCcEEEEeccccceeeCCC-CcccHHHcCCCC-----cCCEEEEecCcccc-cCccceeEEEe---cCHH
Confidence            99999999999999999999999987532 334555543322     23589999999999 79999999998   8999


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+..... ...+++.+                                  .|.++..+++.          ..++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~----------~~~~~~  291 (393)
T PRK05764        256 LIKAMSKLQSHSTSNPTSI----------------------------------AQYAAVAALNG----------PQDEVE  291 (393)
T ss_pred             HHHHHHHHHhhcccCCChH----------------------------------HHHHHHHHHcC----------ChHHHH
Confidence            9999987765 33455666                                  44444444330          113477


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|++++++.+..|+|++|+|+++.-...      ..+. ++.++...+++++||.++||..|+. 
T Consensus       292 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~------~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~-  363 (393)
T PRK05764        292 EMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------KSIT-DSLEFAEALLEEAGVAVVPGIAFGA-  363 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc------cccC-CHHHHHHHHHHhCCEEEccccccCC-
Confidence            8888999999999999999888998889999999987752110      0011 2356667778889999999988765 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     ++          ++|++++.+++++++++++|+
T Consensus       364 -----------------------------------------------~~----------~vRis~~~~~~~~~~~i~~l~  386 (393)
T PRK05764        364 -----------------------------------------------PG----------YVRLSYATSLEDLEEGLERIE  386 (393)
T ss_pred             -----------------------------------------------CC----------EEEEEecCCHHHHHHHHHHHH
Confidence                                                           33          999999999999999999999


Q ss_pred             HHHHH
Q psy13922        499 EFHEE  503 (509)
Q Consensus       499 ~~~~~  503 (509)
                      +++++
T Consensus       387 ~~~~~  391 (393)
T PRK05764        387 RFLES  391 (393)
T ss_pred             HHHHh
Confidence            99864

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=1e-43  Score=368.06  Aligned_cols=359  Identities=17%  Similarity=0.247  Sum_probs=289.4

Q ss_pred             HHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cE
Q psy13922          7 LSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV   79 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i   79 (509)
                      .++.+..+++..+++    |.|.+  |+.+.+++.+.+..   . ..+|++..|.+++|+++++++.+.+|...+++ +|
T Consensus        19 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i   94 (386)
T PRK09082         19 IFTVMSALAAEHGAINLSQGFPDFDGPPYLVEALAYAMAA---G-HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEI   94 (386)
T ss_pred             HHHHHHHHHhhCCEEEecCCCCCCCCCHHHHHHHHHHHHc---C-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcE
Confidence            344455555544333    55665  57888888888765   2 34599999999999999999998889877776 89


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCc
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNP  159 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~  159 (509)
                      ++|+|+++++..++..++++||    +|+++.|+|..+...++..|.+++.++.+++ +|.+|++.+++.+++     ++
T Consensus        95 ~~t~G~~~al~~~~~~~~~~gd----~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~-----~~  164 (386)
T PRK09082         95 TVTAGATEALFAAILALVRPGD----EVIVFDPSYDSYAPAIELAGGRAVRVALQPP-DFRVDWQRFAAAISP-----RT  164 (386)
T ss_pred             EEeCCHHHHHHHHHHHHcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cccCCHHHHHHhcCc-----cc
Confidence            9999999999999999999998    9999999999999999999999999999754 589999999999876     79


Q ss_pred             eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      ++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++.++. +.     ..++++++||||.
T Consensus       165 ~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~-~~~s~~~~~-~~-----~~~~i~~~S~SK~  237 (386)
T PRK09082        165 RLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA-GHASVLRHP-EL-----RERAFVVSSFGKT  237 (386)
T ss_pred             eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC-CCCChhhCc-Cc-----cCcEEEEeechhh
Confidence            9999999999999999999999999999999999999999999988642 344544431 11     2359999999999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      | |++|+|+||++   +++++++.+.+... ...+++.+                                  .|.++..
T Consensus       238 ~-~~~G~RiG~iv---~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~  279 (386)
T PRK09082        238 Y-HVTGWKVGYCV---APAALSAEFRKVHQYNTFTVNTP----------------------------------AQLALAD  279 (386)
T ss_pred             c-cchhhhhhhhh---CCHHHHHHHHHHHhhhcCCCChH----------------------------------HHHHHHH
Confidence            9 79999999998   78999999988765 34456666                                  5555444


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                      ++..          ..++.+++++.++++++.+.+.|++. ++.+.+++|++|+|++++-..         +. ++.+++
T Consensus       280 ~l~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~~~~~~~~---------~~-~~~~~~  338 (386)
T PRK09082        280 YLRA----------EPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQLVDYSAIS---------DL-DDVEFC  338 (386)
T ss_pred             HHhC----------ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEEEeccccC---------CC-CHHHHH
Confidence            4431          22346778899999999999999987 888889999999998775100         22 356667


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ..+++++||.+.||+.|+..+                                              .+.+        +
T Consensus       339 ~~l~~~~~v~v~pg~~f~~~~----------------------------------------------~~~~--------~  364 (386)
T PRK09082        339 QWLTREHGVAAIPLSVFYADP----------------------------------------------FPHR--------L  364 (386)
T ss_pred             HHHHHhCCEEEeCcHHhCCCC----------------------------------------------CCCC--------E
Confidence            778889999999999886410                                              1222        9


Q ss_pred             EEEEeecChHHHHHHHHHHHH
Q psy13922        479 FRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       479 ~Rls~~~~~~~i~~~~~~l~~  499 (509)
                      +|++++.+++++++++++|++
T Consensus       365 ~Ri~~~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        365 VRLCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             EEEEecCCHHHHHHHHHHHhh
Confidence            999999999999999999975

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-43  Score=371.76  Aligned_cols=373  Identities=22%  Similarity=0.321  Sum_probs=270.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhh-hcCCCC-C--CCcEEEeCCHHHHHHHHHHH
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISR-RDGQPA-D--WQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~-~~g~~~-~--~~~i~~t~G~~~al~~~~~~   95 (509)
                      |.|+|  |+.+.+.+ ..+..     . +|+++.|.+++|+++++++.+ .++... .  .++|++|+|+++++..++.+
T Consensus       108 g~p~~~~~~~v~e~~-~~~~~-----~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~a  180 (527)
T PRK09275        108 DQLGFDADEFVYELV-DGIIG-----D-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDS  180 (527)
T ss_pred             CCCCCCCCHHHHHHH-HHHhc-----C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHH
Confidence            66666  45566644 44432     2 399999999999999985544 333332 2  34899999999999999987


Q ss_pred             -----hhcCCCCCCCeEEEcCCCChhHHHHHHhc--CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         96 -----LIEDVDGKKPGVLIPIPQYPLYSASLAEF--NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        96 -----l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                           ++++||    +|+++.|+|..|...++..  |.+++.++.+++.+|.+|++.|++++++     ++++|++++||
T Consensus       181 L~~~~ll~pGD----~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-----~tkai~l~nP~  251 (527)
T PRK09275        181 LKENGLLKAGD----KIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-----SIKALFLVNPS  251 (527)
T ss_pred             HhhhhcCCCCC----EEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-----CCCEEEEeCCc
Confidence                 688998    9999999999999998776  4666777666667899999999998776     89999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHH--CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC
Q psy13922        169 NPTGQVLTKENIQDIIKFAHR--EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL  246 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~--~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl  246 (509)
                      ||||.++|++++++|+++|++  +|++||+||+|.+|.+    .+.++.+..+        .++|+++||||.| |++||
T Consensus       252 NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~s~~~~~~--------~~~I~v~SfSK~f-~mtG~  318 (527)
T PRK09275        252 NPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD----DFRSLFAVLP--------YNTILVYSFSKYF-GATGW  318 (527)
T ss_pred             CCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc----cccCHHHhCC--------CCEEEEeehhhhc-cCcHh
Confidence            999999999999999999964  5999999999999874    2345444321        2499999999999 79999


Q ss_pred             eeEEEeeecCCHH-----HHHHH---------HHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhh-hcccCcc-
Q psy13922        247 RGGYSEVINLDPG-----VKAML---------HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL-DGCRGQS-  310 (509)
Q Consensus       247 r~G~v~~~~~~~~-----~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  310 (509)
                      |+||++   ++++     +++.+         +++.+....|...            +|.+.++++..++. +.....+ 
T Consensus       319 RlG~i~---~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~------------~fidrlvad~~~v~~~~t~~~s~  383 (527)
T PRK09275        319 RLGVIA---LHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKL------------KFIDRLVADSRQVALNHTAGLST  383 (527)
T ss_pred             HHhhhh---cCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchh------------hhHHHHHHHHHHHHHhhccCCCC
Confidence            999998   5554     33333         2223333344433            45555555554222 1111111 


Q ss_pred             cccchh-----hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCH-----
Q psy13922        311 VGQTVM-----DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA-----  380 (509)
Q Consensus       311 ~~~~al-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~-----  380 (509)
                      ..|.++     ..+++          ....+.+++++.+++|++.+.+.|. + ++...+|+|+||+|+++....     
T Consensus       384 p~Q~a~al~~~~all~----------~~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~~~p~g~fY~~~di~~~~~~~~g  451 (527)
T PRK09275        384 PQQVQMALFSLFALLD----------EEDAYKKAMKDIIRRRYKALYEGLG-L-PEPEDPNNAAYYTLIDLEEWAEKNYG  451 (527)
T ss_pred             HHHHHHHHHHHHHHHh----------CchHHHHHHHHHHHHHHHHHHHHcC-C-CCcCCCCCeeEEEEEEhHHhhhhccC
Confidence            134432     22232          1122378889999999999998883 2 334457999999998875211     


Q ss_pred             -HHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhc
Q psy13922        381 -KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLER  459 (509)
Q Consensus       381 -~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (509)
                       .+..+.  ....++.+++.++++++||++.||..|+.                                          
T Consensus       452 ~~f~~~l--~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~------------------------------------------  487 (527)
T PRK09275        452 KEFADYL--KKNYSPVDLLFRLAEETGVVLLPGGGFGG------------------------------------------  487 (527)
T ss_pred             chhhhhh--hccCCHHHHHHHHHhcCCEEEeCchhhCC------------------------------------------
Confidence             011111  01124678899999999999999999976                                          


Q ss_pred             ccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        460 TGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                            + .+        ++|+|++ .+++++.++.+||+++++++..+|+
T Consensus       488 ------~-~~--------~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~~~  523 (527)
T PRK09275        488 ------P-EW--------SVRVSLANLNEEDYAKIGKAIRKLLDEYYEEYK  523 (527)
T ss_pred             ------C-CC--------eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2 22        8999999 5889999999999999999999985

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-42  Score=360.74  Aligned_cols=367  Identities=25%  Similarity=0.390  Sum_probs=286.9

Q ss_pred             HHHHHHHHhhc-----CCCCC----CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCC
Q psy13922          6 SLSLQVLALVS-----LPQLF----DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA   74 (509)
Q Consensus         6 ~~~~~~~~~~~-----~~~~~----~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~   74 (509)
                      +.++.++.+..     .+.++    |.|.  .|+.+.+++.+....     ..+|++..|.+++|+++++++. .+|.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~   86 (397)
T PRK07568         13 SPIRKLVPYADEAKKRGIKVYHLNIGQPDIKTPEVFFEAIKNYDEE-----VLAYSHSQGIPELREAFAKYYK-KWGIDV   86 (397)
T ss_pred             chHHHHHHHHHHHHhhCCCEEEecCCCCCCCCCHHHHHHHHHHhcC-----CcCcCCCCCCHHHHHHHHHHHH-HhCCCC
Confidence            45666665532     12232    4444  467788877665432     3459999999999999999998 568888


Q ss_pred             CCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCC-CHHHHHHHHHhh
Q psy13922         75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGL-PISELERSITEA  153 (509)
Q Consensus        75 ~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-d~~~L~~~i~~~  153 (509)
                      ++++|++|+|+++++..++..++++||    +|+++.|+|..+...++..|.+++.++.+.+.+|.+ +++.|++.+++ 
T Consensus        87 ~~~~i~~t~G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~-  161 (397)
T PRK07568         87 EPDEILITNGGSEAILFAMMAICDPGD----EILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-  161 (397)
T ss_pred             CcceEEEcCChHHHHHHHHHHhcCCCC----EEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc-
Confidence            999999999999999999999999988    999999999999998999999999999875445553 68999988876 


Q ss_pred             hccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEE
Q psy13922        154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASF  233 (509)
Q Consensus       154 ~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i  233 (509)
                          ++++|++++||||||.+++.+++++|+++|+++|++||+|++|.+|.+++. .+.++.++.. .     ..+++++
T Consensus       162 ----~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~s~~~~~~-~-----~~~~i~~  230 (397)
T PRK07568        162 ----KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL-KYTSALSLEG-L-----EDRVIII  230 (397)
T ss_pred             ----cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC-CccChhhcCC-C-----cCCEEEE
Confidence                799999999999999999999999999999999999999999999988642 3445544321 0     2358999


Q ss_pred             EecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccccc
Q psy13922        234 MSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ  313 (509)
Q Consensus       234 ~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (509)
                      +||||.| |++|+|+||++.  .++++++.+.+......+++.+                                  .|
T Consensus       231 ~S~SK~~-~~~G~R~G~~~~--~~~~~~~~~~~~~~~~~~~s~~----------------------------------~q  273 (397)
T PRK07568        231 DSVSKRY-SACGARIGCLIS--KNKELIAAAMKLCQARLSPPTL----------------------------------EQ  273 (397)
T ss_pred             ecchhhc-cCCCcceEEEec--CCHHHHHHHHHHhhccCCCCcH----------------------------------HH
Confidence            9999999 789999999972  4678888876654433456666                                  55


Q ss_pred             chhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCC
Q psy13922        314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP  393 (509)
Q Consensus       314 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~  393 (509)
                      .++..+++.          ...+.+++++.++++++.+.+.|++++++.+..|+|++|+|+++..             .+
T Consensus       274 ~~~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~-------------~~  330 (397)
T PRK07568        274 IGAAALLDT----------PESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPV-------------DD  330 (397)
T ss_pred             HHHHHHhhC----------CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCC-------------CC
Confidence            555555431          1234778899999999999999999888888889999999977641             13


Q ss_pred             cHHHHHHHHhh-----cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCC
Q psy13922        394 SVLYAFELLER-----TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGA  468 (509)
Q Consensus       394 ~~~~~~~ll~~-----~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (509)
                      +.+++..++++     +||.+.||..|+..++                                             .+.
T Consensus       331 ~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~---------------------------------------------~~~  365 (397)
T PRK07568        331 AEDFAKWLLTDFNYNGETVMVAPASGFYATPG---------------------------------------------LGK  365 (397)
T ss_pred             HHHHHHHHHhhcccccceEEEeCchHhcCCCC---------------------------------------------CCC
Confidence            45556666654     7999999998864100                                             112


Q ss_pred             CCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHHHhh
Q psy13922        469 GFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       469 ~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      +        +|||+|+.+++++++++++|+++++++.++
T Consensus       366 ~--------~iRls~~~~~~~~~~~~~~l~~~l~~~~~~  396 (397)
T PRK07568        366 N--------EIRIAYVLNEEDLKRAMEILKEALEKYNKR  396 (397)
T ss_pred             C--------eEEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence            2        999999988999999999999999876543

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-42  Score=359.17  Aligned_cols=344  Identities=22%  Similarity=0.310  Sum_probs=279.1

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  ++.+.+++.+.+..   .....|++..|.++||+++++++.+.+|..+++++|++|+|+++++..++.+++++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  113 (386)
T PRK07550         37 AVPGYPPPPELLRALAEAAAD---PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGA  113 (386)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCC
Confidence            55554  46788888877754   34556999999999999999999999998899999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|++++.++.+++.+|.+|++.+++.+++     ++++|++++||||||.++|.++
T Consensus       114 gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~-----~~~~v~~~~P~NPtG~~~~~~~  184 (386)
T PRK07550        114 GD----EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP-----RTRAIALVTPNNPTGVVYPPEL  184 (386)
T ss_pred             CC----EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc-----cCcEEEEeCCCCCCCcccCHHH
Confidence            98    99999999999999999999999999998766788999999999987     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|++||+||+|.+|.++.. ...+..... +     .+.++++++||||.+ |++|+|+||++   .+++
T Consensus       185 ~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~-~~~~~~~~~-~-----~~~~~i~~~S~SK~~-g~~G~RiG~i~---~~~~  253 (386)
T PRK07550        185 LHELYDLARRHGIALILDETYRDFDSGGG-APHDLFADP-D-----WDDTLVHLYSFSKSY-ALTGHRVGAVV---ASPA  253 (386)
T ss_pred             HHHHHHHHHHcCeEEEEeccchhhccCCC-CCcchhhCC-C-----ccccEEEEecchhhc-cCcccceEeee---cCHH
Confidence            99999999999999999999999876432 122222210 1     123589999999999 79999999998   7889


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+.+... ...+++.+                                  .|.++..++.          .+.++++
T Consensus       254 ~~~~~~~~~~~~~~~~s~~----------------------------------~q~~~~~~l~----------~~~~~~~  289 (386)
T PRK07550        254 RIAEIEKFMDTVAICAPRI----------------------------------GQIAVAWGLP----------NLADWRA  289 (386)
T ss_pred             HHHHHHHHHhhcccCCCcH----------------------------------HHHHHHHHhc----------cHHHHHH
Confidence            9988887765 33455666                                  5555555543          1234477


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      +.++.++++++.+.+.|.+++++.+ .+.+++|+|++++.          .+ .++.+++..+++++||.+.||..|+. 
T Consensus       290 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~----------~~-~~~~~l~~~l~~~~gv~v~pg~~f~~-  356 (386)
T PRK07550        290 GNRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPF----------PD-RPSREVARRLAKEAGILCLPGTMFGP-  356 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCC----------CC-CCHHHHHHHHHHhcCEEEeCchhhCC-
Confidence            8888999999999999998756654 46689999977641          01 23556667778889999999998865 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKF  497 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l  497 (509)
                                                                     .+.+        ++||+++ .+++++++++++|
T Consensus       357 -----------------------------------------------~~~~--------~iRis~~~~~~~~~~~~~~~l  381 (386)
T PRK07550        357 -----------------------------------------------GQEG--------YLRLAFANADVAGIGELVERL  381 (386)
T ss_pred             -----------------------------------------------CCCC--------EEEEEeecCCHHHHHHHHHHH
Confidence                                                           2223        8999999 6889999999999


Q ss_pred             HHH
Q psy13922        498 REF  500 (509)
Q Consensus       498 ~~~  500 (509)
                      .++
T Consensus       382 ~~~  384 (386)
T PRK07550        382 RAF  384 (386)
T ss_pred             Hhh
Confidence            876

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=1.6e-42  Score=360.22  Aligned_cols=350  Identities=22%  Similarity=0.356  Sum_probs=279.0

Q ss_pred             CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.|.  .|+.+.+++.+.+..   .....|+++.|.+++|+++++++++++|+.++++ +|++|+|+++++..++..+++
T Consensus        37 g~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~  113 (395)
T PRK08175         37 GNPDGPTPPHIVEKLCEVAQR---PDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLD  113 (395)
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC
Confidence            4444  366788887777655   3445699999999999999999998889888887 799999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|..+...++..|++++.++.++++.   +.+.+++.++...  .++++|++++||||||.+++.+
T Consensus       114 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~--~~~~~v~i~~p~NPtG~~~~~~  184 (395)
T PRK08175        114 HGD----TVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESY--PKPKMMILGFPSNPTAQCVELE  184 (395)
T ss_pred             CCC----EEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhcc--CCceEEEEeCCCCCCCCCCCHH
Confidence            998    999999999999999999999999999986643   4788888776421  1689999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. ...++.++. ..     ...+++++||||.| |+||+|+||++   +++
T Consensus       185 ~~~~i~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~~-~~-----~~~~i~~~S~SK~~-g~pGlRiG~~~---~~~  253 (395)
T PRK08175        185 FFEKVVALAKRYDVLVVHDLAYADIVYDGW-KAPSIMQVP-GA-----KDVAVEFFTLSKSY-NMAGWRIGFMV---GNP  253 (395)
T ss_pred             HHHHHHHHHHHcCcEEEEecchHhhccCCC-CCcchhcCC-Cc-----ccCEEEEeeccccc-cCcchhheeee---CCH
Confidence            999999999999999999999999988532 334443321 00     12378899999999 79999999998   899


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++++.+.... ..+.+.+                                  .|.+...++.          ....++
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~----------~~~~~~  289 (395)
T PRK08175        254 ELVSALARIKSYHDYGTFTP----------------------------------LQVAAIAALE----------GDQQCV  289 (395)
T ss_pred             HHHHHHHHHHhhcccCCCcH----------------------------------HHHHHHHHHh----------CcHHHH
Confidence            999999887652 3344454                                  3333333332          112347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++++.++++++.+.+.|+.+ ++.+..+++|+|+|++++...         ...++.+++.++++++||.+.||..|+.
T Consensus       290 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~---------~~~~~~~~~~~l~~~~gv~v~p~~~f~~  359 (395)
T PRK08175        290 RDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPY---------AAMGSLEFAKKLLNEAKVCVSPGIGFGD  359 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCccc---------CCCCHHHHHHHHHHhCCEEEeCchhhCc
Confidence            888999999999999999998 788888999999998775210         0013566667788889999999998865


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++||+++.+.+.+++++++|
T Consensus       360 ------------------------------------------------~~~~--------~lRis~~~~~~~~~~al~~l  383 (395)
T PRK08175        360 ------------------------------------------------YGDT--------HVRFALIENRDRIRQAIRGI  383 (395)
T ss_pred             ------------------------------------------------CCCC--------eEEEEeCCCHHHHHHHHHHH
Confidence                                                            3333        89999998899999999999


Q ss_pred             HHHHHHH
Q psy13922        498 REFHEEF  504 (509)
Q Consensus       498 ~~~~~~~  504 (509)
                      +++++++
T Consensus       384 ~~~l~~~  390 (395)
T PRK08175        384 KAMFRAD  390 (395)
T ss_pred             HHHHHhc
Confidence            9998753

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=1.6e-42  Score=364.37  Aligned_cols=327  Identities=17%  Similarity=0.215  Sum_probs=264.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      ++.+.+++.+....     ...|+++.|.++||+++++++....+   .+++|++|+|+++++.+++++++++||    .
T Consensus       100 ~p~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~~l~~pgd----~  167 (431)
T PRK15481        100 LPDLSRYFARLSRT-----PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLCAHLLPGD----S  167 (431)
T ss_pred             hHHHHHHHHHhhhh-----hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHHHhCCCCC----E
Confidence            34566666655433     34599999999999999999865432   356999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe-CCCCCCCCCCCHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NPtG~~~s~~~l~~l~~  185 (509)
                      |+++.|+|..+...++..|++++.++++++   ++|++.|+++++.     ++++++++ +||||||.++|.+++++|++
T Consensus       168 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~-----~~k~i~~~p~p~NPTG~~~s~~~~~~l~~  239 (431)
T PRK15481        168 VAVEDPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQ-----GARAVILTPRAHNPTGCSLSARRAAALRN  239 (431)
T ss_pred             EEEeCCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhc-----CCCEEEECCCCCCCCCccCCHHHHHHHHH
Confidence            999999999999999999999999999755   5899999999876     78999986 99999999999999999999


Q ss_pred             HHHHC-CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        186 FAHRE-KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       186 ia~~~-~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                      +|+++ +++||+||+|.+|.+.+   ..+....      .  ..++|+++||||.| | ||+|+||++   +++++++.+
T Consensus       240 la~~~~~~~ii~De~Y~~~~~~~---~~~~~~~------~--~~~vi~~~SfSK~~-~-~GlRiG~~i---~~~~~~~~~  303 (431)
T PRK15481        240 LLARYPQVLVIIDDHFALLSSSP---YHSVIPQ------T--TQRWALIRSVSKAL-G-PDLRLAFVA---SDSATSARL  303 (431)
T ss_pred             HHHhcCCceEEecCchhhhccCC---CCCCCcC------C--CCCEEEEeeecccc-C-CCceeEEEe---CCHHHHHHH
Confidence            99999 99999999999997642   1221111      1  23599999999999 7 999999998   899999999


Q ss_pred             HHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHH
Q psy13922        265 HKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDS  343 (509)
Q Consensus       265 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (509)
                      ...... ..+.+.+                                  .|.++..+++     ++.|+   ++++++++.
T Consensus       304 ~~~~~~~~~~~s~~----------------------------------~q~a~~~~l~-----~~~~~---~~l~~~~~~  341 (431)
T PRK15481        304 RLRLNSGTQWVSHL----------------------------------LQDLVYACLT-----DPEYQ---ARLAQARLF  341 (431)
T ss_pred             HHHHhccccCCCHH----------------------------------HHHHHHHHHh-----CccHH---HHHHHHHHH
Confidence            765542 3456666                                  6666666665     22233   448889999


Q ss_pred             HHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccc
Q psy13922        344 LKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH  423 (509)
Q Consensus       344 ~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~  423 (509)
                      ++++++.+.+.|++. ++.+..|++|+|+|++++.              ++..++ ..|.++||.+.||..|+..     
T Consensus       342 ~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~--------------~~~~~~-~~l~~~gV~v~pg~~f~~~-----  400 (431)
T PRK15481        342 YAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT--------------DSQATA-LTLAKSGWLVREGEAFGVS-----  400 (431)
T ss_pred             HHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC--------------CHHHHH-HHHHHCCcEEecCCccccC-----
Confidence            999999999999998 8887789999999987751              233434 4455789999999988651     


Q ss_pred             cccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHH
Q psy13922        424 FRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       424 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~  502 (509)
                                                                .+..        ++||+++ .+++++++++++|++++.
T Consensus       401 ------------------------------------------~~~~--------~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        401 ------------------------------------------APSH--------GLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             ------------------------------------------CCCC--------eEEEEcCCCChHHHHHHHHHHHHHhc
Confidence                                                      1112        8999999 688999999999999874

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=4.5e-42  Score=361.21  Aligned_cols=373  Identities=21%  Similarity=0.309  Sum_probs=271.5

Q ss_pred             CCCCCC-HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHH-HHHhhhcCCC-CCCC--cEEEeCCHHHHHHHHHHH-
Q psy13922         22 DDPRFP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVA-QYISRRDGQP-ADWQ--DVILSAGASDGIKSVLKL-   95 (509)
Q Consensus        22 ~~~~~p-~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va-~~l~~~~g~~-~~~~--~i~~t~G~~~al~~~~~~-   95 (509)
                      |.|+|| +..+.++.+.+..   .   +|+++.|..+++++++ +|+.+.++.. .+++  +|++|+|+++++..++.+ 
T Consensus       102 g~p~~~~~~~~~~~~~~~~~---~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l  175 (521)
T TIGR03801       102 DQLGFDPDAFLYEMCDGIIG---D---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSL  175 (521)
T ss_pred             CCCCCCCCHHHHHHHHHhhc---C---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHH
Confidence            666663 4455555554432   2   3987777788887777 5666655433 3444  899999999999999987 


Q ss_pred             ----hhcCCCCCCCeEEEcCCCChhHHHHHHhc--CCEEEEEecCCCCC-----CCCCHHHHHHHHHhhhccCCceEEEE
Q psy13922         96 ----LIEDVDGKKPGVLIPIPQYPLYSASLAEF--NMEQIGYYLDESKQ-----WGLPISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus        96 ----l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~--g~~~~~v~~~~~~~-----~~~d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                          ++++||    +|+++.|+|.+|...++..  |.+++.++.+++.+     |.+|.+.+++++++     ++++|++
T Consensus       176 ~~~~ll~pGD----~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-----~~kai~l  246 (521)
T TIGR03801       176 KANELLKKGD----KIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-----SIKALFV  246 (521)
T ss_pred             hHhhcCCCCC----EEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC-----CCcEEEE
Confidence                688998    9999999999999987765  78888888765433     99999999987765     7999999


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHC--CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        165 INPGNPTGQVLTKENIQDIIKFAHRE--KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       165 ~~p~NPtG~~~s~~~l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      +|||||||.++|++++++|+++|+++  |++||+||+|.+|.+    .+.++.+..+        .++|+++||||.| |
T Consensus       247 ~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~sl~~~~~--------~~vI~v~SfSK~f-g  313 (521)
T TIGR03801       247 VNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD----DFRSLFAELP--------YNTIGVYSFSKYF-G  313 (521)
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc----cccchhhhCC--------CCEEEEEcchhhc-c
Confidence            99999999999999999999999986  999999999999874    2445444321        2499999999999 7


Q ss_pred             CCCCeeEEEeeecCCHH-HHH------------HHH-HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhh-ccc
Q psy13922        243 ECGLRGGYSEVINLDPG-VKA------------MLH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLD-GCR  307 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~-~~~------------~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  307 (509)
                      ++|||+||++   .+++ +.+            .+. ++.+....|..+            +|.+.+++++.++.. ...
T Consensus       314 ~~G~RlG~i~---~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~------------~fidr~vadsr~v~~~~~~  378 (521)
T TIGR03801       314 ATGWRLGTIA---LHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKL------------KFIDRLVADSRQVALNHTA  378 (521)
T ss_pred             Cchhhhhhhh---cCchHHHHHHHHhccHHHHHHHhhhhccccCChhhh------------hhHHHHHHHHHHHHHhccC
Confidence            9999999998   4433 222            221 223334445554            677778877764332 222


Q ss_pred             Cccc-ccc-----hhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCH-
Q psy13922        308 GQSV-GQT-----VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA-  380 (509)
Q Consensus       308 ~~~~-~~~-----al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~-  380 (509)
                      +.+. .|.     ++..+++.          ...+.+++++.+++|++.+.+.| .+ .+...++.|+||+|+++..-. 
T Consensus       379 g~s~p~Q~q~al~a~~all~~----------~~~y~~~~~~~~~~R~~~l~~~L-g~-~~~~~~~~g~~Y~~~di~~~~~  446 (521)
T TIGR03801       379 GLSTPQQVQMALFSLFALMDK----------ENAYKAETKDICRRREKLLFRGL-GL-PLQEDPNDVAYYTLIDLEEWAE  446 (521)
T ss_pred             CCCcHHHHHHHHHHHHHHhcc----------chhHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCCCeEEEEEeehHHHHH
Confidence            2222 333     22233321          12237888899999999999998 22 233457899999998875111 


Q ss_pred             -----HHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhh
Q psy13922        381 -----KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFE  455 (509)
Q Consensus       381 -----~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (509)
                           ++.....+  ..++.+++.++++++||.+.||..|+.                                      
T Consensus       447 ~~~~~~f~~~l~~--~~~~~~~~~~L~~e~gV~v~PG~~Fg~--------------------------------------  486 (521)
T TIGR03801       447 KNYGEEFSSYLKK--NYSPVDVLFRLAEETGIVLLPGGGFGG--------------------------------------  486 (521)
T ss_pred             HhcchHHHHHHhc--cCCHHHHHHHHHHhCCEEEeCchhcCC--------------------------------------
Confidence                 01111111  114678899999999999999999986                                      


Q ss_pred             hhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhhc
Q psy13922        456 SLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAKY  508 (509)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~~  508 (509)
                                + .+        ++|+|++ .++++++++.++|++++++|.++|
T Consensus       487 ----------~-~~--------~vRisla~l~~~~~~~~~~rl~~~~~~~~~~~  521 (521)
T TIGR03801       487 ----------P-EW--------SVRVSLANLNEYDYAEIGRAIRKILDEYYEAW  521 (521)
T ss_pred             ----------C-CC--------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence                      2 22        8999999 688999999999999999999887

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=1.1e-41  Score=354.10  Aligned_cols=312  Identities=19%  Similarity=0.274  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE--EEeCCHHHHHHHHHHHh--hcCCCCC
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV--ILSAGASDGIKSVLKLL--IEDVDGK  103 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l--~~~gd~~  103 (509)
                      +.+.+++.+.++.   ....+|++..|.++||+++++++.+..+..+++++|  ++|+|+++++.++++.+  +++||  
T Consensus        47 ~~l~~a~~~~~~~---~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd--  121 (396)
T PRK09257         47 RAVKKAEARLLET---ETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA--  121 (396)
T ss_pred             HHHHHHHHHhccc---ccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCC--
Confidence            5677777766554   244469999999999999999997765555678877  99999999999999777  47888  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                        .|++++|+|..|...++..|++++.+|..+..+|++|++.+++.++...  .+..++++++||||||.++|.+++++|
T Consensus       122 --~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~--~~~~~~i~~~p~NPTG~~~s~~~~~~l  197 (396)
T PRK09257        122 --KVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAP--AGDVVLLHGCCHNPTGADLTPEQWDEL  197 (396)
T ss_pred             --eEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence              9999999999999999999999999998433357999999999887521  134555569999999999999999999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH----
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG----  259 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~----  259 (509)
                      +++|++||++||+||+|.++.++.+....++..+...      ..++|+++||||.| |++|+|+||++++..+++    
T Consensus       198 ~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~------~~~vi~i~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~  270 (396)
T PRK09257        198 AELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAA------GLELLVASSFSKNF-GLYGERVGALSVVAEDAEEADR  270 (396)
T ss_pred             HHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhc------CCcEEEEEEcCCcC-ccccccceeEEEEeCCHHHHHH
Confidence            9999999999999999999986422123344443221      23499999999999 688999999973234544    


Q ss_pred             HHHHHHHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch-HHHHHHH
Q psy13922        260 VKAMLHKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY-EQFSREK  337 (509)
Q Consensus       260 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~~~~~  337 (509)
                      ++.++.... ..+.+++.+                                  .|.++..++.     ++.+ ..+.+++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~-----~~~~~~~~~~~~  311 (396)
T PRK09257        271 VLSQLKATIRTNYSNPPAH----------------------------------GAAIVATILN-----DPELRAEWEAEL  311 (396)
T ss_pred             HHHHHHHHhhhhcCCCcHH----------------------------------HHHHHHHHhC-----CHHHHHHHHHHH
Confidence            334443332 244556666                                  4555544444     2222 2345668


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      +++++.++++++.+.+.|++..   ++.+..|+||+|+|++++                 .+++.++++++||.+.|
T Consensus       312 ~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~-----------------~~~~~~l~~~~~V~~~p  371 (396)
T PRK09257        312 EEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT-----------------PEQVDRLREEFGVYAVG  371 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCC-----------------HHHHHHHHHcCCEEEcC
Confidence            8999999999999999999862   367788999999997653                 12367888999998874

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.2e-41  Score=348.76  Aligned_cols=336  Identities=23%  Similarity=0.416  Sum_probs=270.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+.+++.+.++..... ..+|++..|.+++|++++++++..++..+++++|++|+|+++++..+++.++++
T Consensus        41 g~p~~~~~~~v~~a~~~~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~  119 (394)
T PRK06836         41 GNPSVPPPAAVKEALRELAEEEDPG-LHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNP  119 (394)
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCCcC-cccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCC
Confidence            55654  567888888887753222 456999999999999999999998888899999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..+...++..|++++.++.+++ +|.+|++++++.+++     ++++|++++||||||.++|.++
T Consensus       120 gd----~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~-----~~~~v~~~~p~NPtG~~~~~~~  189 (394)
T PRK06836        120 GD----EVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITP-----KTKAVIINSPNNPTGVVYSEET  189 (394)
T ss_pred             CC----EEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCc-----CceEEEEeCCCCCCCcCCCHHH
Confidence            88    9999999999999999999999999998765 478999999999976     7999999999999999999999


Q ss_pred             HHHHHHHHHH------CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        180 IQDIIKFAHR------EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       180 l~~l~~ia~~------~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +++|+++|++      ||++||+||+|.++.+++. ...++.+.         ..++++++||||.+ |+||+|+||++ 
T Consensus       190 ~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~---------~~~~i~~~S~SK~~-~~pGlRiG~~~-  257 (394)
T PRK06836        190 LKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA-EVPYIFKY---------YDNSIVVYSFSKSL-SLPGERIGYIA-  257 (394)
T ss_pred             HHHHHHHHHHhhhccCCCeEEEEeccccccccCCC-CCCChHHc---------cCcEEEEecchhhc-cCcceeeEEEe-
Confidence            9999999999      8999999999999987642 23333221         12499999999999 79999999998 


Q ss_pred             ecCCHHHHHH---HHH---hhh--cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCC
Q psy13922        254 INLDPGVKAM---LHK---SIS--AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQP  325 (509)
Q Consensus       254 ~~~~~~~~~~---l~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  325 (509)
                        .++.+.+.   +..   ...  ...+.+.+                                  .|.++..++..   
T Consensus       258 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~---  298 (394)
T PRK06836        258 --VNPEMEDADDLVAALVFANRILGFVNAPAL----------------------------------MQRVVAKCLDA---  298 (394)
T ss_pred             --cCHHHhhhHHHHHHHHHHhhccccccCCHH----------------------------------HHHHHHHHhCC---
Confidence              56665432   111   111  11244444                                  55565555541   


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        326 GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                            .      ..++.++++++.+.+.|+++ |+.+.++.+|+|+|++++.             .++.+++ ..|.++
T Consensus       299 ------~------~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~-------------~~~~~~~-~~l~~~  351 (394)
T PRK06836        299 ------T------VDVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSPE-------------EDDVAFC-EKAKKH  351 (394)
T ss_pred             ------h------HHHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCCC-------------CCHHHHH-HHHHhC
Confidence                  0      12456778889999999988 8888899999999976641             1344444 667788


Q ss_pred             CeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeec
Q psy13922        406 GICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILP  485 (509)
Q Consensus       406 gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~  485 (509)
                      ||.++||..|+.                                                ++          ++||+++.
T Consensus       352 gv~v~~g~~f~~------------------------------------------------~~----------~iRi~~~~  373 (394)
T PRK06836        352 NLLLVPGSGFGC------------------------------------------------PG----------YFRLSYCV  373 (394)
T ss_pred             CEEEECchhcCC------------------------------------------------CC----------eEEEEecC
Confidence            999999988865                                                44          89999999


Q ss_pred             ChHHHHHHHHHHHHHHHHH
Q psy13922        486 QPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~~  504 (509)
                      +++++++++++|++++++|
T Consensus       374 ~~~~~~~~i~~l~~~l~~~  392 (394)
T PRK06836        374 DTETIERSLPAFEKLAKEY  392 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999755

>KOG0256|consensus

Probab=100.00  E-value=1.1e-41  Score=331.39  Aligned_cols=347  Identities=20%  Similarity=0.361  Sum_probs=287.5

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcC--CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDG--QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA  122 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~  122 (509)
                      ....|.+-.|++.+|+++|+++..-.|  +..+|+++++|+|+|.+.+.+.-.|++|||    .-++|.|.|.++..-++
T Consensus       113 ~la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgd----afLvPtPyY~gfdrdl~  188 (471)
T KOG0256|consen  113 ELAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGD----AFLVPTPYYPGFDRDLR  188 (471)
T ss_pred             hHhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCc----eeeecCCCCCcccccce
Confidence            345588888999999999999987665  347899999999999999999999999999    99999999999987665


Q ss_pred             -hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        123 -EFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       123 -~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                       +.|+++++|.+..+++|.++++.||+++.+.++. -+++.++|+||+||.|++++++++..++++|.++|+++|+||+|
T Consensus       189 ~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIy  268 (471)
T KOG0256|consen  189 WRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIY  268 (471)
T ss_pred             eccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhh
Confidence             4599999999999999999999999999987765 68999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV  280 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (509)
                      +.-+|+.. .+.|+.++..+..-+  ...+.+++|+||.+ |+||+|+|.+.  +-++.+.....+..+ +...++.   
T Consensus       269 a~sVF~~~-~F~Sv~ev~~~~~~~--~~rvHivyslSKD~-GlpGfRvGviY--S~ne~VvsaA~kmss-f~~vSs~---  338 (471)
T KOG0256|consen  269 AGSVFDKS-EFRSVLEVRKDPHLD--PDRVHIVYSLSKDF-GLPGFRVGVIY--SNNEDVVSAATKMSS-FGLVSSQ---  338 (471)
T ss_pred             cccccCcc-CceEHHHHhhccccC--CCcEEEEEEecccc-CCCceEEEEEE--ecChHHHHHHHHHhh-ccCCcHH---
Confidence            99999854 899999987765422  34588889999999 99999999996  478888888888776 5566666   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                                     .|..+..++.+    +...+++   +++.+++++.+..++.+.|+.+ |
T Consensus       339 -------------------------------tQ~~la~LLSD----~~f~~~y---l~en~~Rl~~rh~~~~~gLk~l-g  379 (471)
T KOG0256|consen  339 -------------------------------TQYLLASLLSD----EEFTREY---LRENNKRLRIRHRYIVEGLKAL-G  379 (471)
T ss_pred             -------------------------------HHHHHHHHhch----HHHHHHH---HHHHHHHHHHHHHHHHhhHHhc-C
Confidence                                           55555666552    1111223   7889999999999999999999 9


Q ss_pred             CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHH
Q psy13922        361 MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAK  440 (509)
Q Consensus       361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~  440 (509)
                      |.+.++.+|.|+|++++.--      .......+-+++.+++.+.++-+.||..|.+.                      
T Consensus       380 I~cl~s~AGlF~wvDlr~lL------~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~----------------------  431 (471)
T KOG0256|consen  380 IPCLKSNAGLFCWVDLRKLL------TSLTFEGELELWERILDNVKLNLSPGSSCHCH----------------------  431 (471)
T ss_pred             CceeecCCeeEEEEEhHHhc------CcCChHHHHHHHHHHHHhhccccCCCCcceec----------------------
Confidence            99999999999999986110      01112234455678888889999999998872                      


Q ss_pred             HhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHH-HHHHHHHHHHHHHHHh
Q psy13922        441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKL-KAMLEKFREFHEEFLA  506 (509)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i-~~~~~~l~~~~~~~~~  506 (509)
                                              .||          |||++|++..++. +-+++||++++..+.+
T Consensus       432 ------------------------EpG----------WFRvcFAn~~~~t~~~am~Ri~~~~~~~~~  464 (471)
T KOG0256|consen  432 ------------------------EPG----------WFRVCFANMSEETLEVAMRRLKQFLDSQVQ  464 (471)
T ss_pred             ------------------------CCC----------eEEEEeccCCHHHHHHHHHHHHHHHHhhhc
Confidence                                    267          9999999555554 4499999999986654

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-41  Score=353.31  Aligned_cols=342  Identities=14%  Similarity=0.190  Sum_probs=262.1

Q ss_pred             CHHHHHHHHHHHhccc-CCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEE--EeCCHHHHHHHHHH---HhhcCC
Q psy13922         27 PDDVKQRAQAVLDGCR-GQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI--LSAGASDGIKSVLK---LLIEDV  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~-~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~--~t~G~~~al~~~~~---~l~~~g  100 (509)
                      |..+.+.+.+++.+.. .....+|+++.|.+++|+++++++.+..+..+++++|+  .|.|+++++..++.   .++++|
T Consensus        45 ~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~G  124 (404)
T PTZ00376         45 KPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAG  124 (404)
T ss_pred             CEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCC
Confidence            3345555655553321 24446699999999999999999976666667889998  48999999988875   567888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    +|++++|+|..|...++..|++++.+++.++.+|++|++.+++.++...  ++.+++++++||||||.++|.+++
T Consensus       125 d----~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~--~~~~~~~~~~p~NPTG~~~s~~~~  198 (404)
T PTZ00376        125 T----TVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAP--NGSVVLLHACAHNPTGVDPTEEQW  198 (404)
T ss_pred             C----EEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHH
Confidence            8    9999999999999999999999999999654568999999999987421  145667779999999999999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCC-CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEG-SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      ++|+++|++|+++||+||+|.+|.+++. ..+.++..+...      ..++|+++||||.| |++|+|+||++++.++++
T Consensus       199 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~------~~~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~  271 (404)
T PTZ00376        199 KEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER------GVEFLVAQSFSKNM-GLYGERIGALHIVCANKE  271 (404)
T ss_pred             HHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc------CCcEEEEEeCCCcc-cccccccceEEEEeCCHH
Confidence            9999999999999999999999988531 112233333211      23599999999999 799999999843237887


Q ss_pred             HHHHH----HHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch-HHH
Q psy13922        260 VKAML----HKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY-EQF  333 (509)
Q Consensus       260 ~~~~l----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~  333 (509)
                      +++.+    .+.. ..+.+++.+                                  .|.++..+++     ++.| +.+
T Consensus       272 ~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~-----~~~~~~~~  312 (404)
T PTZ00376        272 EAANVLSQLKLIIRPMYSSPPIH----------------------------------GARIADRILS-----DPELRAEW  312 (404)
T ss_pred             HHHHHHHHHHHHHhhhcCCCchH----------------------------------HHHHHHHHhC-----CHHHHHHH
Confidence            66544    3322 234455666                                  5555555554     2222 445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        334 SREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      .++++++++.++++++.+.+.|+++.   ++.+..++||||+|+++.                 .+++..+++++||.+.
T Consensus       313 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------------~~~~~~L~~~~~v~v~  375 (404)
T PTZ00376        313 LSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------------KEQVERLIEKYHIYLL  375 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC-----------------HHHHHHHHHhCCEeec
Confidence            56678888999999999999999872   255667899999997553                 3457788888899997


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEK  489 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~  489 (509)
                      |                                                       +          . |++++ .++++
T Consensus       376 p-------------------------------------------------------~----------~-Ris~~~~~~~~  389 (404)
T PTZ00376        376 D-------------------------------------------------------N----------G-RISVAGLTSKN  389 (404)
T ss_pred             C-------------------------------------------------------C----------C-eEEEeccCHHh
Confidence            4                                                       3          2 89997 89999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13922        490 LKAMLEKFREFHEE  503 (509)
Q Consensus       490 i~~~~~~l~~~~~~  503 (509)
                      +++++++|++++..
T Consensus       390 ~~~~~~~l~~~~~~  403 (404)
T PTZ00376        390 VDYVAEAIHDVVRN  403 (404)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998753

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=4.2e-41  Score=350.36  Aligned_cols=338  Identities=19%  Similarity=0.257  Sum_probs=259.1

Q ss_pred             CCCC--CCHHHHHHHHHHHhcccC-CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPR--FPDDVKQRAQAVLDGCRG-QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~--~p~~v~~a~~~~l~~~~~-~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.|.  .|+.+.+++.+.+.+... .....|+|..|.++||+++|+++.+.   .+++++|++|+|+++++..++ .++.
T Consensus        41 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~Ga~~al~~l~-~l~~  116 (402)
T TIGR03542        41 GDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDGAKCDVFRLQ-SLFG  116 (402)
T ss_pred             CCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCCcHHHHHHHH-HhcC
Confidence            5555  467889999988876321 23345989999999999999986432   378899999999999999875 5557


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCC-----------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNM-----------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      +||    .|+++.|+|..|...++..|+           +++.++.+++.+|.+|++.     ..     ++++|++++|
T Consensus       117 ~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~-----~~~~i~l~nP  182 (402)
T TIGR03542       117 SDN----TVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EP-----KIDIIYLCSP  182 (402)
T ss_pred             CCC----EEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-----cC-----CceEEEEeCC
Confidence            887    999999999999999999999           9999998766566666422     12     6899999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      |||||.++|.+++++|+++|+++|++||+||+|.+|.+++. ...++..+..    .  ..++|+++||||.| |+||+|
T Consensus       183 ~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~----~--~~~vi~~~SfSK~~-g~pGlR  254 (402)
T TIGR03542       183 NNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS-LPHSIFEIPG----A--KECAIEFRSFSKTA-GFTGVR  254 (402)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC-CCcchhhCCC----C--cccEEEEecCcccc-CCCCcc
Confidence            99999999999999999999999999999999999987542 2233333211    0  13589999999999 799999


Q ss_pred             eEEEeeecCCHHHH--------HHHHHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        248 GGYSEVINLDPGVK--------AMLHKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       248 ~G~v~~~~~~~~~~--------~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      +||++   ++++++        ..+.... ....+++.+                                  .|.++..
T Consensus       255 iG~~i---~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~----------------------------------~q~~~~~  297 (402)
T TIGR03542       255 LGWTV---VPKELTYADGHSVIQDWERRQCTKFNGASYP----------------------------------VQRAAEA  297 (402)
T ss_pred             eEEEE---ecHHHhhcchhhHHHHHHHHhhhcccCCCHH----------------------------------HHHHHHH
Confidence            99998   677776        2222211 233345666                                  5555444


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                      ++.     ++.+    .+..+.++.++++++.+.+.|++. ++++.++.+++|+|++++.           + .++.+++
T Consensus       298 ~l~-----~~~~----~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~-----------~-~~~~~l~  355 (402)
T TIGR03542       298 AYA-----GEGL----QPILEAISYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPE-----------G-ISSWDFF  355 (402)
T ss_pred             HHc-----Ccch----hHHHHHHHHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCC-----------C-CCHHHHH
Confidence            443     1112    235567788999999999999987 7888888899999987751           1 1345667


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ..+++++||.++||+.|+.                                                .+.+        |
T Consensus       356 ~~l~~~~gv~v~pg~~f~~------------------------------------------------~~~~--------~  379 (402)
T TIGR03542       356 DFLLYQYHVVGTPGSGFGP------------------------------------------------SGEG--------F  379 (402)
T ss_pred             HHHHHhCCEEEeCchhhCC------------------------------------------------CCCC--------E
Confidence            7788889999999998865                                                3333        9


Q ss_pred             EEEEeecChHHHHHHHHHHHHH
Q psy13922        479 FRTTILPQPEKLKAMLEKFREF  500 (509)
Q Consensus       479 ~Rls~~~~~~~i~~~~~~l~~~  500 (509)
                      +||+++.+++++++++++|+++
T Consensus       380 iRis~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       380 VRFSAFGKRENIVEACERIKEA  401 (402)
T ss_pred             EEEEecCCHHHHHHHHHHHHhh
Confidence            9999988999999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=2.3e-40  Score=367.96  Aligned_cols=365  Identities=17%  Similarity=0.202  Sum_probs=274.5

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |.|++  |+.+++++.+.+..   ..   |  ..|.+++|+++++++.+++|++.++ ++|++|+|+++++..+++++++
T Consensus       705 nE~d~ppPp~V~eAi~eal~~---~~---~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~  776 (1082)
T PLN02672        705 DESFLPVPSAVKASIFESFVR---QN---I--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQ  776 (1082)
T ss_pred             CCCCCCCCHHHHHHHHHHHhh---cC---C--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcC
Confidence            67776  67899998887765   21   2  2345778999999999999988765 5899999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC-CCCCCCCCH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG-NPTGQVLTK  177 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~-NPtG~~~s~  177 (509)
                      +||    .|+++.|+|..|...++..|++++.+|++++.+|.+|++.|+++++..    +.++|++++|| ||||.+++.
T Consensus       777 pGD----~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~----~~~~I~L~nPnhNPTG~v~S~  848 (1082)
T PLN02672        777 EGG----TLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV----KKPWVYISGPTINPTGLLYSN  848 (1082)
T ss_pred             CCC----EEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC----CCCEEEEECcCCCCcCccCCH
Confidence            998    999999999999999999999999999987678999999999998652    34688999997 999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCC-ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGS-KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      +++++|+++|++||++||+||+|.++.|++.. ...++.+.........+..+|++++||||.| |++|+|+||++.  .
T Consensus       849 eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGylIa--p  925 (1082)
T PLN02672        849 SEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFLAL--N  925 (1082)
T ss_pred             HHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeEEe--C
Confidence            99999999999999999999999999886431 1112222222211110123699999999999 799999999982  3


Q ss_pred             CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++++.+.+... ...+...                  .|.             ++.++..++...   +   ..|.++
T Consensus       926 ~~eLi~~l~~~~~-~s~~~~~------------------~q~-------------Aaaaalall~~~---~---~~~~~~  967 (1082)
T PLN02672        926 DSVLIDAFHSAPG-LSRPHST------------------LKY-------------TIKKLLGLKNQK---S---SDLLDG  967 (1082)
T ss_pred             CHHHHHHHHHhhh-hcCCCcH------------------HHH-------------HHHHHHHHHhcc---C---cHHHHH
Confidence            5669999987543 1122111                  011             111111111100   1   224455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhh----cCC-CCcHHHHHHHHhhcCeEEec
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKA----EGK-CPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~g~-~~~~~~~~~ll~~~gI~v~p  411 (509)
                      +.+.++.++++++++.+.|++. |+.+.+|+||||+|+++.-..+.......    .++ .++..++..+++++||.+.|
T Consensus       968 l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~P 1046 (1082)
T PLN02672        968 VAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINS 1046 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEec
Confidence            8888999999999999999998 89999999999999876310000000000    011 24667788888889999999


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLK  491 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~  491 (509)
                      |.+|+.                                                ++          ||||+++.++++++
T Consensus      1047 Gs~FG~------------------------------------------------~g----------~~RIsfa~~~e~Le 1068 (1082)
T PLN02672       1047 SSWTGI------------------------------------------------PG----------YCRFSFALEDSEFD 1068 (1082)
T ss_pred             CcccCC------------------------------------------------CC----------eEEEEecCCHHHHH
Confidence            987765                                                44          99999999999999


Q ss_pred             HHHHHHHHHHH
Q psy13922        492 AMLEKFREFHE  502 (509)
Q Consensus       492 ~~~~~l~~~~~  502 (509)
                      +++++|+++.+
T Consensus      1069 eALerL~kf~~ 1079 (1082)
T PLN02672       1069 RALKAIARFKE 1079 (1082)
T ss_pred             HHHHHHHHHHH
Confidence            99999999765

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=4.2e-41  Score=345.69  Aligned_cols=325  Identities=27%  Similarity=0.457  Sum_probs=269.2

Q ss_pred             CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHh-hcCCCCCCCeEEEcCCCChhHHHHH
Q psy13922         44 QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLL-IEDVDGKKPGVLIPIPQYPLYSASL  121 (509)
Q Consensus        44 ~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~p~y~~~~~~~  121 (509)
                      .....|++..|.+++|+++++++++.+|+.++++ +|++|+|+.+++..++..+ .++++    +|+++.|+|..+...+
T Consensus        35 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~----~vlv~~P~y~~~~~~~  110 (363)
T PF00155_consen   35 SSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGD----TVLVPDPCYPSYIEAA  110 (363)
T ss_dssp             TGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTS----EEEEEESSSTHHHHHH
T ss_pred             cccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccc----cceecCCccccccccc
Confidence            4566699999999999999999998889899999 9999999999999999999 67888    9999999999999999


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccC-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHC-NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~-~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      +..|.+++.++++.+.+|.+|++.|++.+++...+. +++++++++||||||.+++.+++++|+++|+++|++||+||+|
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y  190 (363)
T PF00155_consen  111 RLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAY  190 (363)
T ss_dssp             HHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred             cccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeece
Confidence            999999999998877788999999999999854432 4789999999999999999999999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV  280 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (509)
                      .++.++.. .+.+..   ..+..   ..++|+++|+||.| |++|+|+||++   .++++++.+......+.. +..   
T Consensus       191 ~~~~~~~~-~~~~~~---~~~~~---~~~vi~~~S~SK~~-g~~GlRvG~i~---~~~~~~~~l~~~~~~~~~-~~~---  255 (363)
T PF00155_consen  191 SDLIFGDP-DFGPIR---SLLDE---DDNVIVVGSLSKSF-GLPGLRVGYIV---APPELIERLRRFQRSGLS-SSP---  255 (363)
T ss_dssp             TTGBSSSS-HTHHHH---GHHTT---TSTEEEEEESTTTT-TSGGGTEEEEE---EEHHHHHHHHHHHHHTTS-SHH---
T ss_pred             eccccCCC-ccCccc---ccccc---cccceeeeeccccc-ccccccccccc---chhhhhhhhhhccccccc-cch---
Confidence            99988642 222211   11211   23499999999999 89999999998   699999999988775544 555   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                                     .+.++..++..       .....++.+++++.++++++.+.+.|+++ +
T Consensus       256 -------------------------------~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~  296 (363)
T PF00155_consen  256 -------------------------------MQAAAAAALSD-------PELVEKWLEELRERLRENRDLLREALEEI-G  296 (363)
T ss_dssp             -------------------------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             -------------------------------hhHHHHHhhhc-------ccccccccccchhhHHHHHHHHHHHHHHh-h
Confidence                                           34444333320       12223478999999999999999999999 9


Q ss_pred             CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHH
Q psy13922        361 MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAK  440 (509)
Q Consensus       361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~  440 (509)
                      +.+.++++++|+|+.+...             ++.++.++++++.||.++||..|+.                       
T Consensus       297 ~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~pg~~~~~-----------------------  340 (363)
T PF00155_consen  297 ITVLPPEAGFFLWVRLDPN-------------DAEELAQELLEEYGILVRPGSYFGV-----------------------  340 (363)
T ss_dssp             SEEEHHSBSSEEEEEESHH-------------HHHHHHHHHHHHHTEEEEEGGGGTS-----------------------
T ss_pred             hheeeccCccEEEEEcccc-------------hHHHHHHHHHHhCCEEEEecCCCCC-----------------------
Confidence            9999888999999777611             2456677888888999999998877                       


Q ss_pred             HhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-ecChHHHHHHHHHH
Q psy13922        441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-LPQPEKLKAMLEKF  497 (509)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~~~~~~i~~~~~~l  497 (509)
                                               ++          +||+++ ..+++++++++++|
T Consensus       341 -------------------------~~----------~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  341 -------------------------PG----------YIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             -------------------------TT----------EEEEEGGCSCHHHHHHHHHHH
T ss_pred             -------------------------CC----------EEEEEeccCCHHHHHHHHhhC
Confidence                                     44          999999 59999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=8.3e-40  Score=342.32  Aligned_cols=361  Identities=20%  Similarity=0.266  Sum_probs=260.1

Q ss_pred             CCCCC-C---HHHHHHHHHHHhccc-CCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRF-P---DDVKQRAQAVLDGCR-GQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~-p---~~v~~a~~~~l~~~~-~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      |.|.. |   +.+.+++...+.+.. .....+|++..|.++||+++++++++++|+++++++|++|+|+++++.++++++
T Consensus        38 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l  117 (416)
T PRK09440         38 GNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLF  117 (416)
T ss_pred             CCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHH
Confidence            55553 3   245566666655421 123456999999999999999999999999999999999999999999999999


Q ss_pred             hcCC-CCCCCeEEE-cCCCChhHHHHHHhcCC----EEEEEecCCC-CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         97 IEDV-DGKKPGVLI-PIPQYPLYSASLAEFNM----EQIGYYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        97 ~~~g-d~~~~~Vlv-~~p~y~~~~~~~~~~g~----~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      +.++ ++.++.|++ ..|+|..|...+...+.    ....++++.+ .+|.+|++.|+  +..     +++++++++|||
T Consensus       118 ~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-----~~~~i~l~~P~N  190 (416)
T PRK09440        118 AGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE-----DTGAICVSRPTN  190 (416)
T ss_pred             hccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC-----CceEEEEecCCC
Confidence            8631 111239999 69999999886654442    1122233222 24789999987  333     689999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      |||.++|.+++++|+++|+++|++||+||+|.++...     ..+.+..+..     ..++|+++||||.  |+||+|+|
T Consensus       191 PTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-----~~~~~~~~~~-----~~~vI~~~SfSK~--~~pGlRiG  258 (416)
T PRK09440        191 PTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-----IIFSEATPLW-----NPNIILCMSLSKL--GLPGVRCG  258 (416)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-----cchhhcCccc-----cCCeEEEeccccc--CCCcceEE
Confidence            9999999999999999999999999999999764321     1111111110     2359999999995  58999999


Q ss_pred             EEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        250 YSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      |++   +++++++.+...... ..+++.+                                  .|.++..+++     ++
T Consensus       259 ~~i---~~~~l~~~~~~~~~~~~~~~s~~----------------------------------~q~~~~~~l~-----~~  296 (416)
T PRK09440        259 IVI---ADEEIIEALSNMNGIISLAPGRL----------------------------------GPAIAAEMIE-----SG  296 (416)
T ss_pred             EEe---CCHHHHHHHHHHHHHhccCCCcH----------------------------------HHHHHHHHhc-----cc
Confidence            998   899999999887663 3456666                                  6666666665     23


Q ss_pred             chHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-C--CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        329 SYEQFSREKQS-VLDSLKQRAKMVADTFNSI-E--GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       329 ~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                      .|.++   ..+ +++.++++++.+.+.|.+. +  ++.+..|+||+|+|++++-          .++ ++.++. ..+.+
T Consensus       297 ~~~~~---~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~----------~~~-~~~~~~-~~l~~  361 (416)
T PRK09440        297 DLLRL---SETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKD----------LPI-TTEELY-QRLKA  361 (416)
T ss_pred             hHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCC----------CCC-CHHHHH-HHHHH
Confidence            34333   333 6777888888888888763 3  3566789999999987751          011 344444 45678


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      +||.++||+.|+..                                               .+..  ..++..+|||+++
T Consensus       362 ~gV~v~pg~~F~~~-----------------------------------------------~~~~--~~~~~~~iRis~~  392 (416)
T PRK09440        362 RGVLVVPGHYFFPG-----------------------------------------------LDED--WPHAHQCIRMNYV  392 (416)
T ss_pred             CCEEEechHhhCCC-----------------------------------------------Cccc--cCCcCceEEEEec
Confidence            89999999988641                                               0000  0011238999999


Q ss_pred             cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        485 PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      .+.+++++++++|++++++.+++
T Consensus       393 ~~~~~l~~~i~~l~~~~~~~~~~  415 (416)
T PRK09440        393 QDDEEIEKGIAILAEEVEKAYAE  415 (416)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhc
Confidence            88999999999999999887764

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=3.7e-40  Score=338.99  Aligned_cols=324  Identities=21%  Similarity=0.318  Sum_probs=255.7

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCCCcEEEeCCHHHHHHHHHHHh-h
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQDVILSAGASDGIKSVLKLL-I   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l-~   97 (509)
                      +.|.+  |+.+.+++.+....      .+|+++.|.+++|+++++++.+++|++ +++++|++|+|+++++..++..+ +
T Consensus        35 ~~p~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~  108 (364)
T PRK07865         35 GTPVDPVPPVIQEALAAAADA------PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL  108 (364)
T ss_pred             CCCCCCCCHHHHHHHHHHHhh------CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcC
Confidence            55544  56777777665432      259999999999999999999999987 89999999999999999988888 6


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||    .|+++.|+|..+...++..|++++.++.         ++.++.   .     ++++|++++||||||.+++.
T Consensus       109 ~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~~---~-----~~~~v~~~~p~NPtG~~~~~  167 (364)
T PRK07865        109 GPGD----VVVIPELAYPTYEVGARLAGATVVRADS---------LTELGP---Q-----RPALIWLNSPSNPTGRVLGV  167 (364)
T ss_pred             CCCC----EEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCCc---c-----cceEEEEcCCCCCCCccCCH
Confidence            8888    9999999999999999999999988741         233322   2     68999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|+++|++||+||+|.++.+++  ...+.  +.++... ....++|+++||||.| |++|+|+||++   ++
T Consensus       168 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~--~~~~~~~-~~~~~~i~~~S~SK~~-~~~GlRiG~i~---~~  238 (364)
T PRK07865        168 DHLRKVVAWARERGAVVASDECYLELGWDA--EPVSI--LDPRVCG-GDHTGLLAVHSLSKQS-NLAGYRAGFVA---GD  238 (364)
T ss_pred             HHHHHHHHHHHHcCCEEEEecchhhhccCC--CCCcc--ccccccC-CccceEEEEeechhcc-CCCceeeEEEe---cC
Confidence            999999999999999999999999988754  12221  1111100 0134699999999999 79999999998   89


Q ss_pred             HHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++++.+..... ...+++.+                                  .|.++..++..        .   ++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~--------~---~~  273 (364)
T PRK07865        239 PALVAELLEVRKHAGMMVPAP----------------------------------VQAAMVAALGD--------D---AH  273 (364)
T ss_pred             HHHHHHHHHHHHhcCCCcCHH----------------------------------HHHHHHHHhCC--------H---HH
Confidence            999999987654 33456666                                  55555555441        2   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      .++.++.++++++.+.+.|++. |+.+..+++++|+|+++..              +... ..+.|.++||.+.||..|+
T Consensus       274 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~l~~~gv~v~pg~~f~  337 (364)
T PRK07865        274 VREQRERYARRRAVLRPALEAA-GFRVDHSEAGLYLWATRGE--------------DCWD-TVAWLAERGILVAPGDFYG  337 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCcccCCCccEEEEEeCCC--------------CHHH-HHHHHHHCCEEEeCccccC
Confidence            6778889999999999999987 8888889999999976631              1233 3456778899999999876


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEK  496 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~  496 (509)
                      .                                                .+.+        ++||+++.+++++++++++
T Consensus       338 ~------------------------------------------------~~~~--------~iRi~~~~~~~~~~~~~~~  361 (364)
T PRK07865        338 P------------------------------------------------AGAQ--------HVRVALTATDERIAAAVER  361 (364)
T ss_pred             c------------------------------------------------CCCC--------EEEEEecCCHHHHHHHHHH
Confidence            5                                                2223        9999999889999999999


Q ss_pred             HH
Q psy13922        497 FR  498 (509)
Q Consensus       497 l~  498 (509)
                      |+
T Consensus       362 l~  363 (364)
T PRK07865        362 LA  363 (364)
T ss_pred             hh
Confidence            85

>PLN02397 aspartate transaminase

Probab=100.00  E-value=8e-40  Score=342.23  Aligned_cols=344  Identities=15%  Similarity=0.176  Sum_probs=251.2

Q ss_pred             CCCCCHHHHHHHHHHHhcc-cCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE-----EEeCCHHHHHHHHHHHh
Q psy13922         23 DPRFPDDVKQRAQAVLDGC-RGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV-----ILSAGASDGIKSVLKLL   96 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~-~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i-----~~t~G~~~al~~~~~~l   96 (509)
                      +|+.++.+.+.+.++.... ..+...+|+++.|.++||+++++++.+..+...+.++|     +.++|+.+ +...+..+
T Consensus        60 ~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~  138 (423)
T PLN02397         60 TEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLR-LGAEFLAR  138 (423)
T ss_pred             CCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHH-HHHHHHHH
Confidence            3333444455555543221 22444469999999999999999996654433333343     33444433 33444445


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +.+||    +|++++|+|..|...++..|++++.+++.+..+|++|++.+++.+.+.  .++++++++++||||||.+++
T Consensus       139 ~~pGd----~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~P~NPTG~v~s  212 (423)
T PLN02397        139 FYPGS----TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA--PDGSFVLLHACAHNPTGVDPT  212 (423)
T ss_pred             hCCCC----EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCC
Confidence            56888    999999999999999999999999999844335799999999888742  125778888999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCC-CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEG-SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      .+++++|+++|++||++||+||+|.+|.+++. ..+.++..+...      ..++|+++||||.| |++|+|+||++++.
T Consensus       213 ~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~------~~~vI~~~SfSK~~-~~~G~RvG~~v~~~  285 (423)
T PLN02397        213 PEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVED------GHEILVAQSYAKNM-GLYGERVGALSVVC  285 (423)
T ss_pred             HHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhc------CCcEEEEEECcccC-CCccccceEEEEEe
Confidence            99999999999999999999999999998531 122333333211      12499999999999 79999999985333


Q ss_pred             CCHHHHHH----HHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        256 LDPGVKAM----LHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       256 ~~~~~~~~----l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      .++++++.    +.+... .+.+++.+                                  .|.++..++.     ++.|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~L~-----~~~~  326 (423)
T PLN02397        286 KSADVAVRVKSQLKLIARPMYSNPPIH----------------------------------GASIVATILG-----DPEL  326 (423)
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCCcHH----------------------------------HHHHHHHHhC-----CHHH
Confidence            56665554    333332 34456666                                  4555544444     1112


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        331 -EQFSREKQSVLDSLKQRAKMVADTFNSIEG----MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       331 -~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                       ..+.++++++++.++++++.+.+.|+++ +    +.+..|+||||+|++++                 ++++..+++++
T Consensus       327 ~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~-----------------~~~~~~Ll~~~  388 (423)
T PLN02397        327 FSEWTKELKGMADRIISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLN-----------------KEQVDRMTKEY  388 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCC-----------------HHHHHHHHHhC
Confidence             2455568899999999999999999998 5    77778999999997653                 23688999999


Q ss_pred             CeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-
Q psy13922        406 GICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-  484 (509)
Q Consensus       406 gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-  484 (509)
                      ||++.+                                                       +          - |++++ 
T Consensus       389 ~V~v~~-------------------------------------------------------~----------~-Ri~~~~  402 (423)
T PLN02397        389 HIYMTR-------------------------------------------------------D----------G-RISMAG  402 (423)
T ss_pred             CEEECC-------------------------------------------------------C----------C-eEEEee
Confidence            999862                                                       2          2 89998 


Q ss_pred             cChHHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~  503 (509)
                      .+.+.|++++++|++++++
T Consensus       403 ~~~~~i~~~~~~i~~~~~~  421 (423)
T PLN02397        403 LSSKNVPYLADAIHAVVTN  421 (423)
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999863

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=3.9e-40  Score=337.28  Aligned_cols=318  Identities=20%  Similarity=0.307  Sum_probs=254.2

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..     ..+|++. +.++||+++++++      ++++++|++|+|+++++..+++++ .+ +    
T Consensus        33 ~p~~~~~a~~~~~~~-----~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~~~~~-~~-~----   94 (354)
T PRK06358         33 VPESLKQAITENLDK-----LVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELIFNIVKVT-KP-K----   94 (354)
T ss_pred             CCHHHHHHHHHHHHh-----hhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHHHHHHHHh-CC-C----
Confidence            478888888887643     4458764 5789999999998      278999999999999999999987 33 4    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|..|...++..|++++.++++++++|.+| +.+++.+..     +++++++++||||||.+++.+++++|++
T Consensus        95 ~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~  168 (354)
T PRK06358         95 KVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKE-----EIDLVFLCNPNNPTGQLISKEEMKKILD  168 (354)
T ss_pred             cEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhcc-----CCCEEEEeCCCCCCCCccCHHHHHHHHH
Confidence            8999999999999999999999999999877678899 666666654     6899999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|++||+||+|.+|.+++.  ..+.......      ..++|+++||||.| |++|+|+||++.  .++.+++.+.
T Consensus       169 ~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~------~~~vi~~~S~SK~~-gl~G~RiG~lv~--~~~~~~~~~~  237 (354)
T PRK06358        169 KCEKRNIYLIIDEAFMDFLEENE--TISMINYLEN------FKNLIIIRAFTKFF-AIPGLRLGYGLT--SNKNLAEKLL  237 (354)
T ss_pred             HHHhcCCEEEEeCcccccCCCcc--chhHHHhccC------CCCEEEEEechhhc-cCcchhheeeec--CCHHHHHHHH
Confidence            99999999999999999987642  2333222211      34699999999999 899999999972  3678888888


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      +... .++.+.+                                  .|.++..++++        .   +++++.++.++
T Consensus       238 ~~~~-~~~~~~~----------------------------------~q~~~~~~l~~--------~---~~~~~~~~~~~  271 (354)
T PRK06358        238 QMRE-PWSINTF----------------------------------ADLAGQTLLDD--------K---EYIKKTIQWIK  271 (354)
T ss_pred             HhCC-CCcchHH----------------------------------HHHHHHHHhcc--------H---HHHHHHHHHHH
Confidence            7654 3455666                                  55555555441        1   23677888889


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccc
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR  425 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r  425 (509)
                      ++++.+.+.|++++++.+.++.|+ |+|++++               +..++...+ .++||.++||+.|+. .+.++||
T Consensus       272 ~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~---------------~~~~~~~~l-~~~gI~v~~~~~f~~-~~~~~iR  333 (354)
T PRK06358        272 EEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLE---------------KPIDLRKEL-LKKGILIRSCSNYRG-LDENYYR  333 (354)
T ss_pred             HHHHHHHHHHhcCCCcEEcCCcce-EEEEEcC---------------chHHHHHHH-HHCCeEEEECCCCCC-CCCCEEE
Confidence            999999999999888888888766 7786664               124444444 467999999999954 2568999


Q ss_pred             cchhhhhhhHHHHHHHh
Q psy13922        426 QQVWWRHYTQRAIAKAK  442 (509)
Q Consensus       426 ~~~~~~~~~~~~~~~~~  442 (509)
                      ++++.+.++++++++..
T Consensus       334 ls~~~~~~~~~l~~~l~  350 (354)
T PRK06358        334 VAVKSREDNKKLLKALE  350 (354)
T ss_pred             EEeCCHHHHHHHHHHHH
Confidence            99999999999999864

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-39  Score=335.51  Aligned_cols=332  Identities=16%  Similarity=0.280  Sum_probs=252.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhc--CCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD--GQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~--g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      |.|++  |+.+++++.+.+..  ....++|++ .|.++||+++++++++++  |+.+++++|++|+|+++++..++.+++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~  112 (374)
T PRK02610         36 NEFPYDLPPDLKQKLAWLYQQ--GIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC  112 (374)
T ss_pred             CCCCCCCCHHHHHHHHHHHhh--cccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc
Confidence            44554  67899999887765  112345864 699999999999998876  567899999999999999998888887


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      .+++   +.|+++.|+|..|...++..|++++.++.+++ +|++|++.|++.+++.. ..++++|++++||||||.+++.
T Consensus       113 ~~g~---~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~~~-~~~~k~i~l~~P~NPTG~~~s~  187 (374)
T PRK02610        113 LGGE---GSILVAEPTFSMYGILAQTLGIPVVRVGRDPE-TFEIDLAAAQSAIEQTQ-NPPVRVVFVVHPNSPTGNPLTA  187 (374)
T ss_pred             CCCC---CeEEEcCCChHHHHHHHHHcCCEEEEecCCcc-cCCCCHHHHHHHHHhhc-CCCceEEEEeCCCCCCCCCCCH
Confidence            7764   27999999999999999999999999998643 58999999999987410 0179999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|  +|++||+||+|.+|.+.     ..+..+. +      ..++|+++||||.| |+||+|+||++   ++
T Consensus       188 ~~l~~l~~~~--~~~~iI~De~Y~~~~~~-----~~~~~~~-~------~~~~ivi~SfSK~~-g~~GlRiG~~v---~~  249 (374)
T PRK02610        188 AELEWLRSLP--EDILVVIDEAYFEFSQT-----TLVGELA-Q------HPNWVILRTFSKAF-RLAAHRVGYAI---GH  249 (374)
T ss_pred             HHHHHHHhcc--CCcEEEEeccccccCcc-----chHHHHh-c------CCCEEEEEecchhc-cCcccceeeee---cC
Confidence            9999999876  49999999999998532     1122221 1      23488899999999 79999999998   89


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +++++.+.+... .++.+.+                                  .|.++..++..       ++.+   .
T Consensus       250 ~~l~~~l~~~~~-~~~~~~~----------------------------------~q~a~~~~l~~-------~~~~---~  284 (374)
T PRK02610        250 PELIAVLEKVRL-PYNLPSF----------------------------------SQLAAQLALEH-------RQEL---L  284 (374)
T ss_pred             HHHHHHHHHhcC-CCCCCHH----------------------------------HHHHHHHHhcC-------HHHH---H
Confidence            999999987664 3345555                                  45554444431       2223   4


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +.+++.+++ ++.+.+.|+.++++.+. |.+++|+|++++.           +. ++.++ ...|.++||.++++     
T Consensus       285 ~~~~~~~~~-r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~-----------~~-~~~~~-~~~l~~~gi~v~~~-----  344 (374)
T PRK02610        285 AAIPEILQE-RDRLYQALQELPQLRVW-PSAANFLYLRLSQ-----------DA-ALAAL-HQALKAQGTLVRHT-----  344 (374)
T ss_pred             HHHHHHHHH-HHHHHHHHHhCCCcEeC-CCcceEEEEeCCC-----------CC-CHHHH-HHHHHHCCEEEEeC-----
Confidence            444444444 67788888888777654 7788999977651           11 34444 45567889998742     


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+          ++||+++. ++++++++++|
T Consensus       345 ------------------------------------------------~~----------~lRls~~~-~~~~~~~l~~l  365 (374)
T PRK02610        345 ------------------------------------------------GG----------GLRITIGT-PEENQRTLERL  365 (374)
T ss_pred             ------------------------------------------------CC----------eEEEeCCC-HHHHHHHHHHH
Confidence                                                            12          89999986 46789999999


Q ss_pred             HHHHHH
Q psy13922        498 REFHEE  503 (509)
Q Consensus       498 ~~~~~~  503 (509)
                      +++++.
T Consensus       366 ~~~l~~  371 (374)
T PRK02610        366 QAALTQ  371 (374)
T ss_pred             HHHHhh
Confidence            998764

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.4e-39  Score=333.61  Aligned_cols=324  Identities=22%  Similarity=0.314  Sum_probs=254.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCCCcEEEeCCHHHHHHHHHHHh-h
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQDVILSAGASDGIKSVLKLL-I   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l-~   97 (509)
                      |+|.+  |+.+.+++.+...      ...|+++.|.++||+++++++.+++|++ +++++|++|+|+++++..++..+ .
T Consensus        29 ~~p~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~  102 (357)
T TIGR03539        29 GTPVDPVPPLIRAALAAAAD------APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL  102 (357)
T ss_pred             CCCCCCCCHHHHHHHHHHHh------hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcC
Confidence            55544  5677777765432      2359999999999999999999998987 99999999999999999999888 6


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||    .|+++.|+|..+...++..|++++.++         |++.+..   .     ++++|++++|+||||.+++.
T Consensus       103 ~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~~---~-----~~~~v~~~~p~NPtG~~~~~  161 (357)
T TIGR03539       103 GPGD----TVVIPELAYPTYEVGALLAGATPVAAD---------DPTELDP---V-----GPDLIWLNSPGNPTGRVLSV  161 (357)
T ss_pred             CCCC----EEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcCc---c-----CccEEEEeCCCCCcCccCCH
Confidence            8888    999999999999999999999988774         2232221   2     68999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|+++|++||+||+|.++.+++.  ..+.  +.+..... ...++|+++||||.| |++|+|+||++   ++
T Consensus       162 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~--~~~~~~~~-~~~~vi~~~S~SK~~-~~~G~R~G~~i---~~  232 (357)
T TIGR03539       162 DELRAIVAWARERGAVVASDECYLELGWEGR--PVSI--LDPRVCGG-DHTGLLAVHSLSKRS-NLAGYRAGFVA---GD  232 (357)
T ss_pred             HHHHHHHHHHHHcCeEEEEecchhhhccCCC--Cccc--eecccCCC-ccccEEEEecccccc-CCCceeEEEEe---cC
Confidence            9999999999999999999999999887542  1111  11110000 123589999999999 79999999998   78


Q ss_pred             HHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++++.+.+.+. ...+++.+                                  .|.++..++..        .   .+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~--------~---~~  267 (357)
T TIGR03539       233 PALVAELLTVRKHAGLMVPAP----------------------------------VQAAMVAALGD--------D---GH  267 (357)
T ss_pred             HHHHHHHHHHHhhcccCCCHH----------------------------------HHHHHHHHcCC--------H---HH
Confidence            999999887664 34456666                                  55555555541        2   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      .++.+..++++++.+.+.|.+. |+.+.+|++|+|+|+++..              ++.. +...|.++||.+.||..|+
T Consensus       268 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~~~~~~~~--------------~~~~-~~~~l~~~gV~v~pg~~f~  331 (357)
T TIGR03539       268 VAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLWATRGE--------------DAWD-TVDRLAELGILVAPGDFYG  331 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEEEEEECCC--------------CHHH-HHHHHHhCCEEECCccccC
Confidence            5677888999999999999987 8888889999999976631              2233 3456788899999999876


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEK  496 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~  496 (509)
                      .                                                .+.+        +|||+++.++++|++++++
T Consensus       332 ~------------------------------------------------~~~~--------~iRis~~~~~~~i~~~~~~  355 (357)
T TIGR03539       332 P------------------------------------------------AGSQ--------HVRVALTATDERIAAAVAR  355 (357)
T ss_pred             C------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHh
Confidence            5                                                3333        9999999889999999988


Q ss_pred             HH
Q psy13922        497 FR  498 (509)
Q Consensus       497 l~  498 (509)
                      |+
T Consensus       356 l~  357 (357)
T TIGR03539       356 LT  357 (357)
T ss_pred             hC
Confidence            73

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=335.25  Aligned_cols=349  Identities=17%  Similarity=0.243  Sum_probs=259.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCC---CCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD---WQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~---~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .+.+.+++.+++.+.......+|+++.|.++||+++++++.+..+ ...   .++|++|+|+++++.+++..++++||  
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd--   94 (388)
T PRK08637         18 GPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGD--   94 (388)
T ss_pred             CcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHHHhcCCCC--
Confidence            346677777776653334455699999999999999999876543 233   26899999999999999999999998  


Q ss_pred             CCeEEEcCCCChhHHHHHH-hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                        .|+++.|+|..|...+. ..|.+++.+|+..+ ++++|++.+++.++.... ...+++++++||||||.+++.+++++
T Consensus        95 --~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~~-~~~~~~~~~~P~NPTG~~~s~~~~~~  170 (388)
T PRK08637         95 --TVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAYN-KGKVIVILNFPNNPTGYTPTEKEATA  170 (388)
T ss_pred             --EEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHHhhcc-CCCEEEEEeCCCCCCCCCCCHHHHHH
Confidence              99999999999998765 58999999998422 247899999998872100 14455667899999999999999999


Q ss_pred             HHHHHHH-----CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec--
Q psy13922        183 IIKFAHR-----EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN--  255 (509)
Q Consensus       183 l~~ia~~-----~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~--  255 (509)
                      |+++|++     ++++||+||+|.+|.+++. ...++.....+.   .++..+++++|+||.+ ++||+|+||+++..  
T Consensus       171 l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~-~~~~~~~~~~~~---~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~  245 (388)
T PRK08637        171 IVEAIKELADAGTKVVAVVDDAYFGLFYEDS-YKESLFAALANL---HSNILAVKLDGATKEE-FVWGFRVGFITFGTKA  245 (388)
T ss_pred             HHHHHHHHHhcCCcEEEEecccchhcccCCc-cchhhHHHhhcc---cccceEEEeccccccC-CCcccceEEEEEcccc
Confidence            9999875     8999999999999988653 233332211111   1122245566999999 79999999998422  


Q ss_pred             -CCHHHHHHHHHhh-----hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc
Q psy13922        256 -LDPGVKAMLHKSI-----SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS  329 (509)
Q Consensus       256 -~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  329 (509)
                       .++++++.+....     ....++|.+                                  .|.++..+++     +  
T Consensus       246 ~~~~~l~~~~~~~~~~~~~~~~~~~s~~----------------------------------~q~a~~~~l~-----~--  284 (388)
T PRK08637        246 GSSQTVKEALEKKVKGLIRSNISNGPHP----------------------------------SQSAVLRALN-----S--  284 (388)
T ss_pred             CCcHHHHHHHHHHHHHHhhcccCCCCcH----------------------------------HHHHHHHHhC-----C--
Confidence             3578888876421     233466777                                  6666666655     2  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        330 YEQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                       ..+.+++++.+..++++++.+.+.|+..   +++.+.+|++|+|+|++++  .          . ++.+++..+++++|
T Consensus       285 -~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~--~----------~-~~~~l~~~l~~~~g  350 (388)
T PRK08637        285 -PEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK--G----------V-DAEELRVHLLEKYG  350 (388)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCC--h----------H-HHHHHHHHHhhhcc
Confidence             2344457778888999999998888764   2577888999999997774  1          1 24566677778889


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-c
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-P  485 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~  485 (509)
                      |.+.+.    .                                                .+          ++|++++ .
T Consensus       351 v~~~~~----~------------------------------------------------~~----------~iRi~~~~~  368 (388)
T PRK08637        351 IGTIAL----N------------------------------------------------ET----------DLRIAFSCV  368 (388)
T ss_pred             eEEEec----c------------------------------------------------CC----------ceEEEeecC
Confidence            988631    1                                                12          8999999 6


Q ss_pred             ChHHHHHHHHHHHHHHHHH
Q psy13922        486 QPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~~  504 (509)
                      +.+++++++++|+++++.+
T Consensus       369 ~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        369 EEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            8999999999999998754

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-38  Score=329.12  Aligned_cols=340  Identities=19%  Similarity=0.259  Sum_probs=264.2

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+.+++.+++..   .....|+++.|.+++|+++++++    |  +++++|++|+|+++++..++++++.+
T Consensus        36 ~~~~~~~~~~~~~a~~~~~~~---~~~~~y~~~~g~~~lr~~ia~~l----~--~~~~~v~~~~g~t~al~~~~~~~~~~  106 (380)
T PRK06225         36 NTNHLGPHEEVREAMIRCIEE---GEYCKYPPPEGFPELRELILKDL----G--LDDDEALITAGATESLYLVMRAFLSP  106 (380)
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---CCCCCCCCCcchHHHHHHHHHhc----C--CCCCcEEEeCCHHHHHHHHHHHhcCC
Confidence            44444  57889999888876   44566999999999999999998    3  57789999999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC-CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      ||    .|+++.|+|..+...++..|.+++.++++ ++++|.+|++.+++.+.+     ++++|++++|+||||.++|.+
T Consensus       107 gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~p~NptG~~~~~~  177 (380)
T PRK06225        107 GD----NAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE-----NTRLIYLIDPLNPLGSSYTEE  177 (380)
T ss_pred             CC----EEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC-----CceEEEEeCCCCCCCcCCCHH
Confidence            88    99999999999999999999999999975 344678999999998876     789999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.+|..+    ..+...+.        ..+++++.||||.+ |++|+|+||++   .++
T Consensus       178 ~~~~i~~~a~~~~~~ii~De~y~~~~~~----~~~~~~~~--------~~~~i~~~s~SK~~-g~~G~RiG~i~---~~~  241 (380)
T PRK06225        178 EIKEFAEIARDNDAFLLHDCTYRDFARE----HTLAAEYA--------PEHTVTSYSFSKIF-GMAGLRIGAVV---ATP  241 (380)
T ss_pred             HHHHHHHHHHHCCcEEEEehhHHHHhcc----CCchhhcC--------CCCEEEEeechhhc-CCccceeEEEe---cCH
Confidence            9999999999999999999999987542    11222211        12488899999999 89999999998   789


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      ++++.+........+.+.+                                  .+.+...++..          ..++.+
T Consensus       242 ~l~~~~~~~~~~~~~~~~~----------------------------------~~~~a~~~l~~----------~~~~~~  277 (380)
T PRK06225        242 DLIEVVKSIVINDLGTNVI----------------------------------AQEAAIAGLKV----------KDEWID  277 (380)
T ss_pred             HHHHHHHHHHhcccCCCHH----------------------------------HHHHHHHHHhc----------chHHHH
Confidence            9999988765434445555                                  34333333220          112356


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCee-ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.++++++.+.+.|++++++.+ ..+.++.|+|+++...          ++ +..++. ..|.++||.++||..|+.
T Consensus       278 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~----------~~-~~~~l~-~~l~~~gi~v~~g~~~~~  345 (380)
T PRK06225        278 RIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA----------GI-DPEDLV-EYLLERKIFVRQGTYTSK  345 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc----------cC-CHHHHH-HHHHHCCEEEcCCcccCc
Confidence            6677788888889999988777543 2345666778776411          12 344444 444578999999976654


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                      .                                               .+.+        ++|++++.+++++++++++|
T Consensus       346 ~-----------------------------------------------~~~~--------~iR~s~~~~~e~l~~~~~~l  370 (380)
T PRK06225        346 R-----------------------------------------------FGDR--------YIRVSFSIPREQVEVFCEEF  370 (380)
T ss_pred             C-----------------------------------------------CCCc--------eEEEEeCCCHHHHHHHHHHH
Confidence            1                                               2223        99999999899999999999


Q ss_pred             HHHHHHHHh
Q psy13922        498 REFHEEFLA  506 (509)
Q Consensus       498 ~~~~~~~~~  506 (509)
                      ++++++++.
T Consensus       371 ~~~~~~~~~  379 (380)
T PRK06225        371 PDVVETLRT  379 (380)
T ss_pred             HHHHHHhhc
Confidence            999988764

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.5e-39  Score=334.02  Aligned_cols=313  Identities=17%  Similarity=0.231  Sum_probs=250.7

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|++  |+.+++++.+.+..     .+.|+ ..|.++||+++++++    +  +++++|++|+|+++++..++++++++
T Consensus        37 nen~~~~~~~v~~a~~~~~~~-----~~~Yp-~~g~~~Lr~aia~~~----~--~~~~~I~vt~Gs~e~i~~~~~~l~~~  104 (366)
T PRK01533         37 NENPFGCSPRVLDELQKSWLD-----HALYP-DGGATTLRQTIANKL----H--VKMEQVLCGSGLDEVIQIISRAVLKA  104 (366)
T ss_pred             CCCCCCCCHHHHHHHHHHHHh-----cCcCC-CCCHHHHHHHHHHHh----C--CCcceEEECCCHHHHHHHHHHHhcCC
Confidence            56666  67899988877655     23474 668899999999998    3  67899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..|...++..|.+++.++.++   +.+|++.|++.+++     +++++++++||||||.+++.++
T Consensus       105 gd----~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~---~~~d~~~l~~~~~~-----~~~~v~i~~P~NPTG~~~~~~~  172 (366)
T PRK01533        105 GD----NIVTAGATFPQYRHHAIIEGCEVKEVALNN---GVYDLDEISSVVDN-----DTKIVWICNPNNPTGTYVNDRK  172 (366)
T ss_pred             CC----EEEEcCCcHHHHHHHHHHcCCEEEEeecCC---CCcCHHHHHHHhCc-----CCcEEEEeCCCCCCCCCcCHHH
Confidence            98    999999999999999999999999999853   37899999998876     7899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++++ ++|+||+|.+|.+.+  ...+.......      ..++|+++||||.| |++|+|+||++   ++++
T Consensus       173 l~~l~~~~~~~~-~~iiDe~y~~~~~~~--~~~~~~~~~~~------~~~vi~~~SfSK~~-~l~GlRiG~~i---~~~~  239 (366)
T PRK01533        173 LTQFIEGISENT-LIVIDEAYYEYVTAK--DFPETLPLLEK------HKNILVLRTFSKAY-GLASFRVGYAV---GHEE  239 (366)
T ss_pred             HHHHHHhCCCCC-EEEEEccHHHhhccc--cCcchhHHhcc------CCCEEEEeCchHHh-cChHHHHhHHh---CCHH
Confidence            999999998766 577799999887643  12232222211      34599999999999 79999999998   7899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+... .++++.+                                  .|.++..++..        .   ++.++
T Consensus       240 ~~~~l~~~~~-~~~~~~~----------------------------------~q~aa~~~l~~--------~---~~~~~  273 (366)
T PRK01533        240 LIEKLNVVRL-PFNVSSL----------------------------------AQKAATIAFGD--------D---EFIEE  273 (366)
T ss_pred             HHHHHHHhcC-CCCcCHH----------------------------------HHHHHHHHhCC--------H---HHHHH
Confidence            9999988764 3567777                                  56666555541        2   23566


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      +++..+++++.+.+.++.+ |+++.+++++ |+|+++.               ++.. +...|.++||.|++   |    
T Consensus       274 ~~~~~~~~r~~~~~~l~~~-g~~~~~~~~n-f~~~~~~---------------~~~~-~~~~l~~~GI~Vr~---~----  328 (366)
T PRK01533        274 IVRVNTEGLRQYESFCKEN-EIPFYQSQTN-FIFLPVE---------------NGGE-IYEACAHAGFIIRP---F----  328 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCccCCCcCc-EEEEeCC---------------CHHH-HHHHHHHCCcEEcc---C----
Confidence            6777778888888888887 8888888655 6776653               1233 35666689999997   3    


Q ss_pred             CccccccchhhhhhhHHHHHHHhh
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKA  443 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~  443 (509)
                       .+++|++++++++|++++++...
T Consensus       329 -~~~iRis~~~~~~~~~l~~al~~  351 (366)
T PRK01533        329 -PNGVRITVGTREQNEGVISVLQQ  351 (366)
T ss_pred             -CCceEEeCCCHHHHHHHHHHHHH
Confidence             36899999999999999998853

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-38  Score=326.48  Aligned_cols=317  Identities=15%  Similarity=0.242  Sum_probs=248.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.+++  |+.+.+++.+.+..     ...|++ .|.++||+++++++      ++++++|++|+|+++++..++++++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~-----~~~Y~~-~~~~~lr~~ia~~~------~~~~~~I~it~G~~~al~~~~~~~~~~  105 (357)
T PRK14809         38 NENPHGPSPAAVEAIREAAER-----VHSYPK-ASHADLTAALADRW------DVSPEQVWLANGGDGALDYLARAMLDP  105 (357)
T ss_pred             CCCCCCCCHHHHHHHHHHHhh-----hhcCCC-CCHHHHHHHHHHHh------CCCcceEEECCCHHHHHHHHHHHhcCC
Confidence            54554  56788888777654     345864 67899999999998      278899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..+...+...|.+++.++++.+.+|.+|.+.+++...      ++++|++++||||||.++|.++
T Consensus       106 gd----~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~------~~k~i~l~~p~NPTG~~~s~~~  175 (357)
T PRK14809        106 GD----TVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD------GERIVYLTSPHNPTGSEIPLDE  175 (357)
T ss_pred             CC----EEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc------CCcEEEEeCCCCCCCcCCCHHH
Confidence            98    9999999999888888889999999998765578888888776542      5899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++ +++||+||+|.+|.+.+     +.......      ..++++++||||.| |+||+|+||++   ++++
T Consensus       176 ~~~l~~~~~~-~~~iI~De~y~~~~~~~-----~~~~~~~~------~~~vi~~~SfSK~~-~~~GlRiG~~~---~~~~  239 (357)
T PRK14809        176 VEALAERTDE-ETLVVVDEAYGEFAERP-----SAVALVEE------RDDVAVLRTFSKAY-GLAGLRLGYAV---VPEE  239 (357)
T ss_pred             HHHHHHhCcc-CcEEEEechhhhccCCc-----hhHHHHhh------CCCEEEEecchhHh-cCcchhheeee---cCHH
Confidence            9999999975 78999999999987532     11121111      23599999999999 79999999998   7899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+... ..+.+.+                                  +|.+...++.           ..+++++
T Consensus       240 ~~~~~~~~~~-~~~~~~~----------------------------------~~~~a~~~l~-----------~~~~~~~  273 (357)
T PRK14809        240 WADAYARVNT-PFAASEL----------------------------------ACRAGLAALD-----------DDEHVER  273 (357)
T ss_pred             HHHHHHHhCC-CCCCCHH----------------------------------HHHHHHHHhC-----------CHHHHHH
Confidence            9999987654 3344555                                  3333333332           0234677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.++++++.+.+.|... .    .+.+|+|+|+++.               ++.++. +.+.++||.++||..|+.  
T Consensus       274 ~~~~~~~~r~~l~~~L~~~-~----~~~~g~f~~~~~~---------------~~~~~~-~~l~~~gv~v~~g~~f~~--  330 (357)
T PRK14809        274 TVETARWAREYIREELDAP-T----WESAGNFVLAEVG---------------DASAVA-EAAQERGVIVRDCTSFGL--  330 (357)
T ss_pred             HHHHHHHHHHHHHHHhcCc-c----CCCCCCEEEEECC---------------CHHHHH-HHHHHCCEEEEECccCCC--
Confidence            7888889999999988653 2    2467888897663               234444 456788999999998865  


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                                    ++          +|||+++. ++++++++++|++
T Consensus       331 ----------------------------------------------~~----------~iRls~~~-~~~~~~~l~~L~~  353 (357)
T PRK14809        331 ----------------------------------------------PE----------CIRITCGT-REETERAVEVLNE  353 (357)
T ss_pred             ----------------------------------------------CC----------eEEEecCC-HHHHHHHHHHHHH
Confidence                                                          33          89999874 6899999999998


Q ss_pred             HHH
Q psy13922        500 FHE  502 (509)
Q Consensus       500 ~~~  502 (509)
                      +++
T Consensus       354 ~l~  356 (357)
T PRK14809        354 VLA  356 (357)
T ss_pred             Hhc
Confidence            874

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-38  Score=328.59  Aligned_cols=299  Identities=17%  Similarity=0.239  Sum_probs=235.4

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|++  |+.+++++.+.+.... .....|++ .|.++||+++++++++++|+++++++|++|+|+++++..++++++++
T Consensus        34 ~~~~~~~~~~~~~al~~~l~~~~-~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~  111 (368)
T PRK03317         34 NENPYPPSPALVADIAEAVAEAA-AGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGP  111 (368)
T ss_pred             CCCCCCCCHHHHHHHHHHHhhhh-hhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCC
Confidence            45555  6789999998876522 23455865 57899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..|...++..|.+++.++.++  +|++|++.+++++...    ++++|++++||||||.+++.++
T Consensus       112 gd----~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~~~~~----~~~~i~l~~p~NPtG~~~~~~~  181 (368)
T PRK03317        112 GR----TALGFVPSYSMHPIIARGTHTEWVEGPRAA--DFTLDVDAAVAAIAEH----RPDVVFLTSPNNPTGTALPLDD  181 (368)
T ss_pred             CC----EEEEeCCChHHHHHHHHhcCCeeEEcccCC--CCCCCHHHHHHHHhcc----CCCEEEEeCCCCCCCCCCCHHH
Confidence            98    999999999999999999999999887653  4789999999998753    6899999999999999999888


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|   +++||+||+|.+|.+.+.   .+...+...      ..++|+++||||.| |++|+|+||++   ++++
T Consensus       182 l~~l~~~~---~~~lI~DE~y~~~~~~~~---~~~~~~~~~------~~~~i~~~SfSK~~-g~~GlRiG~~~---~~~~  245 (368)
T PRK03317        182 VEAILDAA---PGIVVVDEAYAEFRRSGT---PSALTLLPE------YPRLVVSRTMSKAF-AFAGGRLGYLA---AAPA  245 (368)
T ss_pred             HHHHHHHC---CceEEEeCCchhhcccCC---cCHHHHHHh------CCCEEEEEechhhh-ccchhhhhhhh---CCHH
Confidence            88888877   799999999999876532   233333221      22599999999999 79999999998   8999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+..... .++.+.+                                  .|.++..+++.       .+    +..+
T Consensus       246 ~~~~l~~~~~-~~~~s~~----------------------------------~~~a~~~~l~~-------~~----~~~~  279 (368)
T PRK03317        246 VVDALRLVRL-PYHLSAV----------------------------------TQAAARAALRH-------AD----ELLA  279 (368)
T ss_pred             HHHHHHhcCC-CCCCCHH----------------------------------HHHHHHHHhhC-------HH----HHHH
Confidence            9999987654 3355555                                  44444444331       11    1333


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      .++.+.++++.+.+.|++. |+.+.++++++++|.++.               ++.. +...|.++||.+++
T Consensus       280 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---------------~~~~-~~~~l~~~Gv~v~~  334 (368)
T PRK03317        280 SVAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA---------------DRHA-VWQGLLDRGVLIRD  334 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC---------------CHHH-HHHHHHHCCEEEEe
Confidence            4456778888899999888 888888999999885442               2333 34556678999986

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=2.9e-38  Score=324.42  Aligned_cols=291  Identities=20%  Similarity=0.221  Sum_probs=223.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+++++.+.+..     ..+|++.. ..+||+++|+++      .+++++|++|+|++++|..+++++. +++    .
T Consensus        37 ~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~------~v~~~~I~it~G~~~~i~~~~~~l~-~g~----~   99 (360)
T PRK07392         37 PESVIAAIQSALSA-----LRHYPDPD-YRELRLALAQHH------QLPPEWILPGNGAAELLTWAGRELA-QLR----A   99 (360)
T ss_pred             CHHHHHHHHHHHHH-----hhcCCCcC-HHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHHHhC-CCC----e
Confidence            57888888776664     34598765 589999999998      3788999999999999999999875 566    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCC---CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQW---GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                      |+++.|+|..|...++..|.+++.+++++++++   ..+++.+++.. +     ++++++++|||||||.+++++++.+ 
T Consensus       100 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~nP~NPTG~~~~~~~l~~-  172 (360)
T PRK07392        100 VYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-T-----PNDGLLLNNPHNPTGKLWSREAILP-  172 (360)
T ss_pred             EEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-c-----CCCEEEEeCCCCCCCCCcCHHHHHH-
Confidence            999999999999999999999999999866554   24555554432 2     5889999999999999999766555 


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                        +++++++ +|+||+|.+|.+++  ...++......      ..++|+++||||.| |++|+|+||++   +++++++.
T Consensus       173 --l~~~~~~-~IiDE~y~~~~~~~--~~~s~~~~~~~------~~~vi~i~S~SK~~-~l~GlRiG~~v---~~~~~~~~  237 (360)
T PRK07392        173 --LLEQFAL-VVVDEAFMDFLPPD--AEQSLIPCLAE------YPNLIILRSLTKFY-SLPGLRLGYAI---AHPDRLQR  237 (360)
T ss_pred             --HHHHCCE-EEEECchhhhccCc--cccchHHHhhc------CCCEEEEEechhhh-cCCchheeeee---CCHHHHHH
Confidence              5567775 66699999998754  23343332221      24599999999999 79999999998   78999988


Q ss_pred             HHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHH
Q psy13922        264 LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDS  343 (509)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (509)
                      +.+... .++++.+                                  .|.++..+++     +   .   .+.+.+++.
T Consensus       238 ~~~~~~-~~~~s~~----------------------------------~q~~~~~~l~-----~---~---~~~~~~~~~  271 (360)
T PRK07392        238 WQQWRD-PWPVNGL----------------------------------AAAAAIAALA-----D---R---DFQQQTWAW  271 (360)
T ss_pred             HHhhCC-CCCCCHH----------------------------------HHHHHHHHhc-----c---H---HHHHHHHHH
Confidence            876553 3456676                                  5666555554     1   1   224555667


Q ss_pred             HHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        344 LKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       344 ~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++++.+.+.|+.++++.+.+ .+++|+|++++.              ++.++...+++++||.++||..|+.
T Consensus       272 ~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~--------------~~~~l~~~ll~~~gv~v~pg~~f~~  330 (360)
T PRK07392        272 LPPAREALFQGLASLPGLTPLP-SAANFLLVQSQG--------------SALQLQEKLLQQHRILIRDCLSFPE  330 (360)
T ss_pred             HHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcCC--------------CHHHHHHHHHhhCCEEEEeCCCCCC
Confidence            8889999999999888887755 678899976641              3455566777889999999998865

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.2e-37  Score=319.33  Aligned_cols=297  Identities=20%  Similarity=0.247  Sum_probs=227.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|++  |+.+++++.+.+..     ..+|++. +..++|+++++++    +  +++++|++|+|+++++..+++.+ .+
T Consensus        28 ~~~~~~~p~~~~~a~~~~~~~-----~~~y~~~-~~~~lr~~ia~~~----~--~~~~~i~it~Ga~~~l~~~~~~l-~~   94 (356)
T PRK08056         28 NINPLGMPVSLKRAIIDNLDC-----AERYPDV-EYRHLHQALARHH----Q--VPASWILAGNGETESIFAVVSGL-KP   94 (356)
T ss_pred             ccCCCCCCHHHHHHHHHHHHh-----cccCcCc-cHHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHHHh-CC
Confidence            54544  67899998887765     2348764 6799999999998    3  67899999999999999999987 45


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      +     .++++.|+|..|...++..|.+++.+|++++.+|.+| +.+++.+.+     ++++|++++||||||.+++.++
T Consensus        95 g-----~viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~-----~~k~v~l~~p~NPTG~~~~~~~  163 (356)
T PRK08056         95 R-----RAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTP-----DLDCLFLCTPNNPTGLLPERQL  163 (356)
T ss_pred             C-----CEEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccC-----CCCEEEEeCCcCCCCCCCCHHH
Confidence            4     4677899999999999999999999999876667777 445455554     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++++++||+||+|.+|.+++. .+.+   ....      ..++++++||||.| |++|+|+||++.  .+++
T Consensus       164 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~---~~~~------~~~~i~~~S~SK~~-~~~G~RiG~~v~--~~~~  230 (356)
T PRK08056        164 LQAIAERCKSLNIALILDEAFIDFIPDET-GFIP---QLAD------NPHLWVLRSLTKFY-AIPGLRLGYLVN--SDDA  230 (356)
T ss_pred             HHHHHHHHHhcCCEEEEecchhccCCcch-HHHH---Hhcc------CCCEEEEEechhhc-cCcchhheeeec--CCHH
Confidence            99999999999999999999999876431 1111   1111      12589999999999 799999999972  3678


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+... .++++.+                                  +|.+...++..        .   .+.++
T Consensus       231 ~~~~l~~~~~-~~~~~~~----------------------------------~~~~a~~~l~~--------~---~~~~~  264 (356)
T PRK08056        231 AVARMRRQQM-PWSINAF----------------------------------AALAGEVILQD--------R---AYQQA  264 (356)
T ss_pred             HHHHHHHhCC-CCchhHH----------------------------------HHHHHHHHhCC--------H---HHHHH
Confidence            8888876543 3345555                                  45554444431        1   23577


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++.++++++.+.+.|++++++.+.++ +++|+|+++..              ++.+++. .|.++||.++||..|..
T Consensus       265 ~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~-~l~~~gI~v~~~~~f~~  326 (356)
T PRK08056        265 TWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCER--------------PDIDLQR-ALLTQRILIRSCANYPG  326 (356)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCC--------------ChHHHHH-HHHHCCeEEEECCCCCC
Confidence            788899999999999998888877655 57788976651              2334444 44468999999998854

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-38  Score=322.66  Aligned_cols=296  Identities=19%  Similarity=0.258  Sum_probs=233.1

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+.+++.+.+..     .. |.|..|.+++|++++++++      +++++|++|+|+++++..++++++++
T Consensus        37 n~~~~~~~~~v~~a~~~~~~~-----~~-~~p~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~~~~~~  104 (359)
T PRK03158         37 NENPYGPSPKVKEAIAAHLDE-----LA-LYPDGYAPELRTKVAKHLG------VDEEQLLFGAGLDEVIQMISRALLNP  104 (359)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----hh-cCCCCcHHHHHHHHHHHhC------CCHHHEEECCCHHHHHHHHHHHHhCC
Confidence            44444  66788888877654     33 5566788999999999982      57889999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..+...+...|.+++.+|.+   ++.+|++.+++.+++     +++++++++||||||.+++.++
T Consensus       105 gd----~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~-----~~~~v~i~~p~NPtG~~~~~~~  172 (359)
T PRK03158        105 GT----NTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDE-----QTKIVWICNPNNPTGTYVNHEE  172 (359)
T ss_pred             CC----EEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCC-----CCCEEEEeCCCCCCCCCCCHHH
Confidence            88    99999999999999999999999999987   247899999988866     7899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.++++.|+ +|++||+||+|.++.+.+.  ..+.......      ..++++++||||.| |++|+|+||++   ++++
T Consensus       173 l~~~~~~~~-~~~~ii~De~y~~~~~~~~--~~~~~~~~~~------~~~vi~~~S~SK~~-g~~GlRiG~~v---~~~~  239 (359)
T PRK03158        173 LLSFLESVP-SHVLVVLDEAYYEYVTAED--YPDTLPLLEK------YENLIVLRTFSKAY-GLAALRVGYGI---ASEE  239 (359)
T ss_pred             HHHHHHhCC-CCcEEEEECchHhhcCCcc--cccHHHHHHh------cCCEEEEEechHhh-cCcchhhehhc---CCHH
Confidence            999888774 6999999999999887532  2222222221      23599999999999 79999999998   8999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+.... ++++.+                                  .|.++..++..        .   ++.++
T Consensus       240 ~~~~~~~~~~~-~~~~~~----------------------------------~q~~~~~~l~~--------~---~~~~~  273 (359)
T PRK03158        240 LIEKLNIARPP-FNTTRI----------------------------------AQYAAIAALED--------Q---AFLKE  273 (359)
T ss_pred             HHHHHHHhcCC-CCCCHH----------------------------------HHHHHHHHhcC--------H---HHHHH
Confidence            99999876653 456666                                  55555555541        2   23566


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      .++.++++++.+.+.|.+. ++.+.++. ++|+|+++..              ++.+++..+ .++||.++||..|+.
T Consensus       274 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~-g~~i~~~~~~--------------~~~~~~~~l-~~~gv~v~~g~~f~~  334 (359)
T PRK03158        274 CVEKNAEGLEQYYAFCKEY-GLFYYPSQ-TNFIFVDTGR--------------DANELFEAL-LKKGYIVRSGAALGF  334 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCeeCCCc-CcEEEEECCC--------------CHHHHHHHH-HHCCeEEeeCCCCCC
Confidence            6777888888899999888 77776554 6788976641              244444455 467999999998864

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.5e-38  Score=317.50  Aligned_cols=314  Identities=20%  Similarity=0.303  Sum_probs=258.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+++++.+.+..     +++|+++ ...+++++++++++    . +++++|++++|+.+.|..++++++.+||    +
T Consensus        37 ~~~~~~~~~~~~~~-----~~rYPd~-~~~~l~~a~a~~~~----~-~~~~~V~~gnGsde~i~~l~~~~~~~gd----~  101 (356)
T COG0079          37 PPKVIEAIRAALDK-----LNRYPDP-DYRELRAALAEYYG----V-VDPENVLVGNGSDELIELLVRAFVEPGD----T  101 (356)
T ss_pred             CHHHHHHHHHHHHh-----hccCCCC-cHHHHHHHHHHHhC----C-CCcceEEEcCChHHHHHHHHHHhhcCCC----E
Confidence            47889988888875     5669887 55899999999994    2 6788999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..|...++..|++++.++..+   |.+|++.+.+.+.+     ++++|+++|||||||..++.++++++++.
T Consensus       102 vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~-----~~~lv~i~nPNNPTG~~~~~~~l~~l~~~  173 (356)
T COG0079         102 VLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRD-----KTKLVFLCNPNNPTGTLLPREELRALLEA  173 (356)
T ss_pred             EEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999886   78999999999998     79999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      +.+ +.+||+||+|.+|..      .+...+...      +.|+++++||||.| |++|+|+||++   +++++++.+.+
T Consensus       174 ~~~-~~~vVvDEAY~eF~~------~~~~~l~~~------~~nlivlRTfSKa~-gLAGlRlGy~i---a~~~~i~~l~~  236 (356)
T COG0079         174 LPE-GGLVVIDEAYIEFSP------ESSLELLKY------PPNLIVLRTFSKAF-GLAGLRVGYAI---ANPELIAALNK  236 (356)
T ss_pred             CCC-CcEEEEeCchhhcCC------chhhhhccC------CCCEEEEEecHHhh-hcchhceeecc---CCHHHHHHHHH
Confidence            988 999999999999874      222222221      45699999999999 89999999988   99999999999


Q ss_pred             hhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy13922        267 SISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQ  346 (509)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (509)
                      .+..| +.|.+                                  ++++..++++         ++  +++++.++...+
T Consensus       237 vr~p~-~v~~~----------------------------------a~~aa~aal~---------~~--~~~~~~~~~~~~  270 (356)
T COG0079         237 VRPPF-NVSSP----------------------------------ALAAAIAALR---------DA--DYLEESVERIRE  270 (356)
T ss_pred             hcCCC-CCCHH----------------------------------HHHHHHHHcc---------cH--HHHHHHHHHHHH
Confidence            88744 56666                                  4555555544         11  458889999999


Q ss_pred             HHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccc
Q psy13922        347 RAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR  425 (509)
Q Consensus       347 ~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r  425 (509)
                      .++.+.+.|+.++ +. ++++.++ |+++++.. .            . ...+.+.|.++||.++.... .. ...+|+|
T Consensus       271 ~r~rl~~~l~~~~-~~~v~pS~aN-Fvlv~~~~-~------------~-~~~l~~~L~~~giivR~~~~-~~-~~~~~lR  332 (356)
T COG0079         271 ERERLYAALKALG-LFGVFPSQAN-FVLVRVPD-A------------E-AAALAEALLKKGILVRDCSS-VG-LLPGYLR  332 (356)
T ss_pred             HHHHHHHHHHhCC-CCeecCCCCc-EEEEECCC-c------------c-HHHHHHHHHHCCEEEEeCCC-CC-CCCCeEE
Confidence            9999999999994 55 6677755 55555541 0            1 11246677778999998865 22 3568999


Q ss_pred             cchhhhhhhHHHHHHHhhc
Q psy13922        426 QQVWWRHYTQRAIAKAKAE  444 (509)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~  444 (509)
                      ++|+++++|++++++....
T Consensus       333 itvgt~een~~ll~AL~~~  351 (356)
T COG0079         333 ITVGTPEENDRLLAALREV  351 (356)
T ss_pred             EEeCCHHHHHHHHHHHHHH
Confidence            9999999999999987653

>KOG0634|consensus

Probab=100.00  E-value=5.8e-38  Score=307.86  Aligned_cols=359  Identities=21%  Similarity=0.234  Sum_probs=280.7

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE  123 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~  123 (509)
                      ...+|++..|.++|...+.++..-....+.-.+ +|++|+|.+.++..+++.+++.||    .|++..++|.+....++.
T Consensus        92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd----~vlie~~ty~~AL~s~~a  167 (472)
T KOG0634|consen   92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGD----HVLIEEYTYPSALQSMEA  167 (472)
T ss_pred             hhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCC----ceEEecccchHHHHhccc
Confidence            345799999999999999996641222222233 899999999999999999999999    999999999999999999


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc----cCCceEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARK----HCNPRAIVI-INPGNPTGQVLTKENIQDIIKFAHREKLFLFADE  198 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~----~~~~~~ivi-~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~De  198 (509)
                      .|+++++|+++.+   +++++.|++.+.+-..    .++++++|. ++-+||||..++.+..++|.++|++|+++||+||
T Consensus       168 ~gv~~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd  244 (472)
T KOG0634|consen  168 LGVKIIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD  244 (472)
T ss_pred             cCceEEeccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence            9999999999877   8999999999976322    256888884 7999999999999999999999999999999999


Q ss_pred             cCCcccccC---C----CccccHH----HHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHh
Q psy13922        199 VYQDNVYAE---G----SKFYSFK----KVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       199 ay~~~~~~~---~----~~~~~~~----~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~  267 (509)
                      .|..+.++.   .    .+..+-.    ++.++.-.-+.+++||...||||.++  ||+|+||++   +++.+++++...
T Consensus       245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia--PGlRlG~it---~~~~~l~ril~~  319 (472)
T KOG0634|consen  245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA--PGLRLGWIT---GNSLFLKRILDL  319 (472)
T ss_pred             ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc--CcceeEEee---cCHHHHHHHhhh
Confidence            999998862   1    1112211    22333333345678999999999995  999999998   899899988776


Q ss_pred             hh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy13922        268 IS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQ  346 (509)
Q Consensus       268 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (509)
                      .. .+.+++.+                                  .|..+.++++.     ..-+.|.+|+.+++..+..
T Consensus       320 ae~~t~~pSg~----------------------------------sq~iv~a~l~~-----wgqeG~~~wi~~l~~~Yt~  360 (472)
T KOG0634|consen  320 AEVATSGPSGF----------------------------------SQGIVYAMLKR-----WGQEGFLRWIQHLRSSYTE  360 (472)
T ss_pred             cceeecCcccc----------------------------------cHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            55 45567776                                  44444444331     0014567889999999999


Q ss_pred             HHHHHHHHHhc-CCC--CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccc
Q psy13922        347 RAKMVADTFNS-IEG--MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH  423 (509)
Q Consensus       347 ~~~~l~~~L~~-~~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~  423 (509)
                      |++++..+|.+ +|.  .++.+|.+|+|+|++++.+.-    -.+.+++..++.....+.+.||.+++|.+|...     
T Consensus       361 Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~----~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~-----  431 (472)
T KOG0634|consen  361 RRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINF----DTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVD-----  431 (472)
T ss_pred             HHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccccc----ccccchHHHHHHHHHHHHHCCeEEecCceeEEc-----
Confidence            99999999998 664  577899999999988852110    011233334566778888999999999999883     


Q ss_pred             cccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHH
Q psy13922        424 FRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       424 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~  502 (509)
                                                                |..    +.+..|||++++ .++++++++++||..+++
T Consensus       432 ------------------------------------------p~~----s~~kiffRls~a~a~~e~l~~g~~rf~~~ik  465 (472)
T KOG0634|consen  432 ------------------------------------------PES----SWSKIFFRLSIAFAEPEKLDEGIERFGSVIK  465 (472)
T ss_pred             ------------------------------------------Ccc----CCCcceEEEEeecCCHHHHHHHHHHHHHHHH
Confidence                                                      231    123359999999 899999999999999999


Q ss_pred             HHHhhcC
Q psy13922        503 EFLAKYK  509 (509)
Q Consensus       503 ~~~~~~~  509 (509)
                      ++.+.+|
T Consensus       466 e~f~~~~  472 (472)
T KOG0634|consen  466 EHFITNK  472 (472)
T ss_pred             HHhhccC
Confidence            8876553

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=9.6e-38  Score=320.09  Aligned_cols=294  Identities=21%  Similarity=0.327  Sum_probs=232.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|++  |+.+++++.+.+..   ..+.+|++ .|.+++|++++++++    .. ..++|++|+|+++++..++.+++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~-~~~~~lr~~ia~~~~----~~-~~~~I~~t~G~~~~i~~~~~~~~~~  104 (356)
T PRK04870         34 MENPYRLPAELRAELGERLAE---VALNRYPD-PRAAALKAALRAAMG----VP-AGADVLLGNGSDELIQLLALACAKP  104 (356)
T ss_pred             CCCCCCCCHHHHHHHHHHhhc---cccccCCC-CCHHHHHHHHHHHhC----cC-CCCcEEEcCCHHHHHHHHHHHhcCC
Confidence            55655  67899999988875   44566987 577999999999983    22 2358999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|++++.+++++  +|.+|++.+++.+.+.    ++++|++++||||||.+++.++
T Consensus       105 gd----~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~~~~~----~~~~v~l~~p~NPtG~~~~~~~  174 (356)
T PRK04870        105 GA----TVLAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTLDLPAMLAAIAEH----RPALVFLAYPNNPTGNLFDDAD  174 (356)
T ss_pred             CC----EEEECCCCHHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhhcC----CCCEEEEcCCCCCCCCCCCHHH
Confidence            98    999999999999999999999999999874  3789999999998753    7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|   ++++|+||+|.+|...   ...+  .+ ..      ..++++++|||| + |++|+|+||++   ++++
T Consensus       175 ~~~i~~~~---~~~ii~De~y~~~~~~---~~~~--~~-~~------~~~vi~~~S~SK-~-~~~GlRiG~~i---~~~~  234 (356)
T PRK04870        175 VERIIEAA---PGLVVVDEAYQPFAGD---SWLP--RL-AR------FPNLLVMRTVSK-L-GLAGLRLGYLA---GHPA  234 (356)
T ss_pred             HHHHHHHC---CCEEEEECCchhhcCc---chHH--HH-hh------CCCEEEEecchh-h-hhHHHhhhhhh---CCHH
Confidence            99999988   7899999999987542   1111  11 11      235999999999 8 79999999998   7999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+...... ++.+.+                                  .|.+...+++           ..+++++
T Consensus       235 ~i~~~~~~~~~-~~~~~~----------------------------------~q~~a~~~l~-----------~~~~~~~  268 (356)
T PRK04870        235 WIAELDKVRPP-YNVNVL----------------------------------TQATALFALE-----------HVDVLDA  268 (356)
T ss_pred             HHHHHHHccCC-CcCCHH----------------------------------HHHHHHHHHh-----------CHHHHHH
Confidence            99998876642 345555                                  4544444433           1123677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      .++.++++++.+.+.|++++++.+.+ .+++|+|++++               ++.. +...|+++||.++||..|+.
T Consensus       269 ~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~---------------~~~~-~~~~l~~~gI~v~~~~~f~~  329 (356)
T PRK04870        269 QAAQLRAERTRLAAALAALPGVTVFP-SAANFILVRVP---------------DAAA-VFDGLKTRGVLVKNLSGMHP  329 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEECC-CCCeEEEEECC---------------CHHH-HHHHHHHCCEEEEECCCCCC
Confidence            78888999999999999988887654 55678887654               1333 35677889999999988854

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-37  Score=320.02  Aligned_cols=292  Identities=20%  Similarity=0.312  Sum_probs=229.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+.+++.+....     ..+|++..| .++|+++++++    +  +++++|++|+|+++++..++.+++++||    .
T Consensus        51 ~~~~~~al~~~~~~-----~~~Y~~~~g-~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~~~~~~~gd----~  114 (371)
T PRK05166         51 SPAVRRAFADIAEL-----LRLYPDPQG-RALREAIAART----G--VPADRIILGNGSEDLIAVICRAVLRPGD----R  114 (371)
T ss_pred             CHHHHHHHHHHHHH-----hhcCCCCcH-HHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHHHHhcCCCC----E
Confidence            56677777664432     445999888 58999999988    3  5788999999999999999999999998    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..+...++..|.+++.++.+++  +++|++.+++.+++     +++++++++||||||.+++.+++++|+++
T Consensus       115 vli~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~  187 (371)
T PRK05166        115 VVTLYPSFPLHEDYPTMMGARVERVTVTPD--LGFDLDALCAAVAR-----APRMLMFSNPSNPVGSWLTADQLARVLDA  187 (371)
T ss_pred             EEEcCCChHHHHHHHHHcCCeEEEeecCCC--CCCCHHHHHHhhhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence            999999999999999999999999998754  58899999998877     68999999999999999999999999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |++ +++||+||+|.+|.+++  .+++......+.     ..++|+++||||.| |++|+|+||+++  .++++++.+.+
T Consensus       188 ~~~-~~~ii~De~y~~~~~~~--~~~~~~~~~~~~-----~~~vi~i~SfSK~~-~l~GlRiG~~i~--~~~~l~~~~~~  256 (371)
T PRK05166        188 TPP-ETLIVVDEAYAEYAAGD--DYPSALTLLKAR-----GLPWIVLRTFSKAY-GLAGLRVGYGLV--SDPELVGLLDR  256 (371)
T ss_pred             CCC-CcEEEEECcHHHhcCCc--CcccHHHHHhhc-----CCCEEEEeechHhh-hcchhheeeeec--CCHHHHHHHHH
Confidence            864 89999999999998643  334444433221     23499999999999 799999999763  58899998877


Q ss_pred             hhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy13922        267 SISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQ  346 (509)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (509)
                      ... ..+++.+                                  .|.++..++..        .   +++++.++.+++
T Consensus       257 ~~~-~~~~~~~----------------------------------~q~~~~~~l~~--------~---~~~~~~~~~~~~  290 (371)
T PRK05166        257 VRT-PFNVNGA----------------------------------AQAAALAALDD--------E---EHLAKGVALALA  290 (371)
T ss_pred             hcc-CCCCCHH----------------------------------HHHHHHHHhcC--------H---HHHHHHHHHHHH
Confidence            654 3456666                                  44443333320        2   346777888899


Q ss_pred             HHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        347 RAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       347 ~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      +++.+.+.|++. |+.+. +.+|+|+|+++..              ++.++...++ ++||.++||..+
T Consensus       291 ~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~--------------~~~~l~~~l~-~~gi~v~p~~~~  342 (371)
T PRK05166        291 ERERLKKELAEM-GYRIA-PSRANFLFFDARR--------------PASAVAEALL-RQGVIVKPWKQP  342 (371)
T ss_pred             HHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCC--------------CHHHHHHHHH-HCCeEEecCCCC
Confidence            999999999988 77764 4557788977641              2444444444 569999998754

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.1e-38  Score=322.23  Aligned_cols=305  Identities=14%  Similarity=0.210  Sum_probs=239.8

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC-CCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV-DGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g-d~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      ..+|+++. ..+||+++++++    +  +++++|++|+|+++++.+++++++.+| +    .|+++.|+|..|...++..
T Consensus        53 ~~~Y~~~~-~~~lr~~ia~~~----~--~~~~~I~~t~G~~~~l~~~~~~~~~~g~~----~vlv~~p~y~~~~~~~~~~  121 (364)
T PRK04781         53 TRRYPDPQ-PPGLRSALAALY----G--CAPEQLLIGRGSDEAIDLLVRALCVPGRD----AVLVTPPVFGMYAVCARLQ  121 (364)
T ss_pred             hccCCCCC-HHHHHHHHHHHh----C--cChHHEEEeCCHHHHHHHHHHHhcCCCCC----eEEEcCCChHHHHHHHHHc
Confidence            45588765 589999999998    3  678999999999999999999999887 6    8999999999999888999


Q ss_pred             CCEEEEEecCC-CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        125 NMEQIGYYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       125 g~~~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      |.+++.+++++ +.+|.+|++.+++.+...    ++++|++++||||||.+++.+++++|+++|+ ++++||+||+|.+|
T Consensus       122 g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f  196 (364)
T PRK04781        122 NAPLVEVPLVDGADGFHADVPAIVAAALAS----NAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEF  196 (364)
T ss_pred             CCEEEEEecCCCccCCCcCHHHHHHHHhcc----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhh
Confidence            99999999853 346778999887655432    7999999999999999999999999999985 58999999999998


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccc
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLP  283 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  283 (509)
                      .+..     +.......      ..++|+++||||.| |+||+|+||++   +++++++.+.+.... ++.+.+      
T Consensus       197 ~~~~-----~~~~~~~~------~~~vi~~~SfSK~~-gl~GlRvGy~v---~~~~l~~~l~~~~~~-~~~~~~------  254 (364)
T PRK04781        197 SDVP-----SAVGLLAR------YDNLAVLRTLSKAH-ALAAARIGSLI---ANAELIAVLRRCQAP-YPVPTP------  254 (364)
T ss_pred             cCCc-----chHHHHhh------CCCEEEEecChhhc-ccccceeeeee---CCHHHHHHHHhccCC-CCCCHH------
Confidence            7531     22222211      23599999999999 89999999998   899999999887653 345555      


Q ss_pred             cccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee
Q psy13922        284 QLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC  363 (509)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  363 (509)
                                                  .|.++..++.     ++.++    +..+.++.++++++.+.+.|++++++..
T Consensus       255 ----------------------------~~~~a~~~l~-----~~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~  297 (364)
T PRK04781        255 ----------------------------CAALAEQALS-----APALA----VTARRVAEVRAERERLHAALAQLPGVRR  297 (364)
T ss_pred             ----------------------------HHHHHHHHHh-----cccHH----HHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence                                        3444334443     11122    2344455678899999999998877753


Q ss_pred             ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhh
Q psy13922        364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKA  443 (509)
Q Consensus       364 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~  443 (509)
                      ..|.+|+|+|++++               +... +...+.++||.++||..|..  ..+|+|++++.+.+|++++++...
T Consensus       298 ~~p~~g~f~~~~~~---------------~~~~-~~~~l~~~gI~v~~~~~~~~--~~~~~Ris~~~~~~~~~l~~al~~  359 (364)
T PRK04781        298 VYPSQGNFLLVRFD---------------DAEA-AFQALLAAGVVVRDQRAAPR--LSDALRITLGTPEQNDRVLAALQR  359 (364)
T ss_pred             ECCCCCcEEEEEcC---------------CHHH-HHHHHHHCCeEEeeCCCCCC--CCCeEEEeCCCHHHHHHHHHHHHH
Confidence            44666888997764               1233 45667789999999987754  357999999999999999998754

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.2e-37  Score=316.30  Aligned_cols=296  Identities=16%  Similarity=0.177  Sum_probs=229.3

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      ..++|+.+. ..+||++++++++      +++++|++|+|+++++..++. +.+++     .|+++.|+|..|...++..
T Consensus        33 ~~~~Yp~~~-~~~lr~~ia~~~~------~~~~~I~it~Gs~~~l~~~~~-~~~~~-----~vv~~~P~y~~y~~~~~~~   99 (332)
T PRK06425         33 DISIYPEIS-YTDIEDQIKIYTQ------GLKIKVLIGPGLTHFIYRLLS-YINVG-----NIIIVEPNFNEYKGYAFTH   99 (332)
T ss_pred             hcccCcCcC-HHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHH-HhCCC-----cEEEeCCChHHHHHHHHHc
Confidence            355697654 4889999999983      678899999999999999997 45664     5777799999999999999


Q ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       125 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      |++++.+|+++.   .+|.+.++    ..    ++++|++++||||||.+++.+++++|+++|++++++||+||+|.+|.
T Consensus       100 G~~v~~vp~~~~---~~~~~~l~----~~----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~  168 (332)
T PRK06425        100 GIRISALPFNLI---NNNPEILN----NY----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFV  168 (332)
T ss_pred             CCeEEEEeCCcc---cCcHHHHh----hc----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccc
Confidence            999999998752   55655443    22    68999999999999999999999999999999999999999999998


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccc
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQ  284 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  284 (509)
                      +++   ..+...+..+      ..++|+++||||.| |+||+|+||++   +++++++.+.+....+ ..+..       
T Consensus       169 ~~~---~~~~~~~~~~------~~~vi~~~SfSK~~-~l~GlRiGy~v---~~~~li~~l~~~~~~~-~~~~~-------  227 (332)
T PRK06425        169 PNR---AEEDVLLNRS------YGNVIIGRSLTKIL-GIPSLRIGYIA---TDDYNMKISRKITEPW-SVCDP-------  227 (332)
T ss_pred             ccc---chhHHHHhcc------CCCEEEEeecHHhc-CCchhhheeee---cCHHHHHHHHHcCCCC-ccCHH-------
Confidence            642   2233333321      23599999999999 89999999998   8999999988754322 22222       


Q ss_pred             ccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec
Q psy13922        285 LFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN  364 (509)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  364 (509)
                                                 ++.++...            ....+.+++++.++++++.+.+.|+++ |+.+.
T Consensus       228 ---------------------------~~~~l~~~------------~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~  267 (332)
T PRK06425        228 ---------------------------AIDFIRSI------------DLDYVAKHSLDIMENERSYLINNLEAM-GFRAA  267 (332)
T ss_pred             ---------------------------HHHHHHHh------------hhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC
Confidence                                       12222110            112235678899999999999999998 78876


Q ss_pred             cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHh
Q psy13922        365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAK  442 (509)
Q Consensus       365 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~  442 (509)
                      .+.+|.|+|++++               ++.++...++ ++||.++||..|+. .+.++||++++++++|++++++..
T Consensus       268 ~~~~g~f~~~~~~---------------~~~~~~~~l~-~~gi~v~~~~~f~~-~~~~~iRis~~~~~~~~~l~~al~  328 (332)
T PRK06425        268 GDPSANFITFMIP---------------DAHDFYSYLL-KNGILVRLLDDYEC-LGEQYIRIAIRRRSFNIKLVNALR  328 (332)
T ss_pred             CCCCceEEEEEcC---------------CHHHHHHHHH-HCCeEEEECCCCCC-CCCCEEEEEeCCHHHHHHHHHHHH
Confidence            5446677886653               2444444444 57999999999964 346899999999999999999875

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3e-37  Score=317.74  Aligned_cols=325  Identities=18%  Similarity=0.220  Sum_probs=250.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+++++.+.+..     ..+|+++. .++||+++|+++    +  +++++|++|+|+++++..++.+++++
T Consensus        40 ~~~~~~~~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~~ia~~~----~--~~~~~I~it~G~~~~l~~~~~~~~~~  107 (369)
T PRK08153         40 NESGFGPSPSVIAAMREAAAE-----IWKYGDPE-NHDLRHALAAHH----G--VAPENIMVGEGIDGLLGLIVRLYVEP  107 (369)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----hhcCCCCc-cHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHHHHHhcCC
Confidence            56666  67888888777644     23488774 689999999998    2  67899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..+...+...|.+++.+|.+.+   .+|++.+++.+...    ++++|++++||||||.++|.++
T Consensus       108 gd----~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~----~~~~i~l~~P~NPtG~~~~~~~  176 (369)
T PRK08153        108 GD----PVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRE----NAPLVYLANPDNPMGSWHPAAD  176 (369)
T ss_pred             CC----EEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhccc----CCcEEEEeCCCCCCCCCCCHHH
Confidence            98    9999999999999999999999999998654   67899888776543    7899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.+|+++|+ ++++||+||+|.++.+++  ...++   ...      ..++|+++||||.| |++|+|+||++   ++++
T Consensus       177 l~~l~~~~~-~~~~lI~DE~y~~~~~~~--~~~~~---~~~------~~~~i~~~SfSK~~-g~~GlRiG~~v---~~~~  240 (369)
T PRK08153        177 IVAFIEALP-ETTLLVLDEAYCETAPAG--AAPPI---DTD------DPNVIRMRTFSKAY-GLAGARVGYAI---GAPG  240 (369)
T ss_pred             HHHHHHhCC-CCcEEEEeCchhhhcCcc--cchhh---hhc------CCCEEEEecchHhc-cCcchheeeee---cCHH
Confidence            999999887 499999999999987653  22222   111      23599999999999 79999999998   7999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+.... ++.+.+                                  +|.++..++..        .   +++++
T Consensus       241 ~~~~l~~~~~~-~~~s~~----------------------------------~q~~~~~~l~~--------~---~~~~~  274 (369)
T PRK08153        241 TIKAFDKVRNH-FGMNRI----------------------------------AQAAALAALKD--------Q---AYLAE  274 (369)
T ss_pred             HHHHHHHhhcC-CCCCHH----------------------------------HHHHHHHHhcC--------H---HHHHH
Confidence            99999876653 456666                                  55555555441        1   23677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe-cCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV-PGAGFGQV  418 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~-pg~~f~~~  418 (509)
                      +++.++++++.+.+.|++. |+.+. +.+++|+|+++....           .....+ .+.|.++||.++ ||..    
T Consensus       275 ~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~-----------~~a~~l-~~~l~~~Gi~v~~p~~~----  336 (369)
T PRK08153        275 VVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDG-----------AFARAV-LDGLIARDIFVRMPGVA----  336 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCc-----------ccHHHH-HHHHHHCCeEEeeCCCC----
Confidence            8889999999999999887 77644 567888887664100           112333 344456899995 5431    


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     .+.+        ++|++++ ++++++..++.|.
T Consensus       337 -----------------------------------------------~~~~--------~iRis~~-~~~~~~~~~~al~  360 (369)
T PRK08153        337 -----------------------------------------------PLDR--------CIRVSCG-PDEELDLFAEALP  360 (369)
T ss_pred             -----------------------------------------------CCCC--------eEEEecC-CHHHHHHHHHHHH
Confidence                                                           1111        8899988 5788888888888


Q ss_pred             HHHHHHH
Q psy13922        499 EFHEEFL  505 (509)
Q Consensus       499 ~~~~~~~  505 (509)
                      ++++..+
T Consensus       361 ~~~~~~~  367 (369)
T PRK08153        361 EALEAAR  367 (369)
T ss_pred             HHHHHhh
Confidence            8876544

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=7.2e-37  Score=314.73  Aligned_cols=284  Identities=18%  Similarity=0.186  Sum_probs=222.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|++  |+.+++++.+.+..     .+.|++.. ..+||+++++++    |  +++++|++|+|+++++..++..++++
T Consensus        51 ~~~~~~~~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~----~--v~~e~I~it~Gs~~ai~~~~~~l~~~  118 (370)
T PRK09105         51 NECPLGPSPAARDAAARSAAL-----SGRYDLEL-EDDLRTLFAAQE----G--LPADHVMAYAGSSEPLNYAVLAFTSP  118 (370)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----hcCCCCch-HHHHHHHHHHHh----C--cChhhEEEcCChHHHHHHHHHHHcCC
Confidence            44444  67899998877654     23487655 789999999987    3  68899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|++++|+|..|...++..|.+++.++.++  +|.+|++.+++. .+     ++++++++|||||||.++++++
T Consensus       119 gd----~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~-----~~~~v~l~nP~NPTG~~~~~~~  186 (370)
T PRK09105        119 TA----GLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DP-----NAGLIYICNPNNPTGTVTPRAD  186 (370)
T ss_pred             CC----EEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CC-----CCCEEEEeCCCCCCCcCcCHHH
Confidence            88    999999999999999999999999999875  368899999776 33     6899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|++.++ ++++||+||+|.+|...     .+..++...      ..++++++||||.| |++|+|+||++   ++++
T Consensus       187 l~~l~~~~~-~~~~lIvDEaY~~f~~~-----~s~~~~~~~------~~~vi~~~SfSK~~-g~~GlRiG~~v---~~~~  250 (370)
T PRK09105        187 IEWLLANKP-AGSVLLVDEAYIHFSDA-----PSVVDLVAQ------RKDLIVLRTFSKLY-GMAGMRLGLAA---ARPD  250 (370)
T ss_pred             HHHHHHhCC-CCcEEEEECchHHhccC-----cchHHHHhh------CCCEEEEecccHhh-cCCccceeeee---cCHH
Confidence            999998764 59999999999886531     233333221      33599999999999 89999999998   7999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+... . ...++.+                                  .+.+...++.           ..+++++
T Consensus       251 ~i~~l~~~-~-~~~~~~~----------------------------------~~~aa~~~L~-----------~~~~~~~  283 (370)
T PRK09105        251 LLAKLARF-G-HNPLPVP----------------------------------AAAAGLASLR-----------DPKLVPQ  283 (370)
T ss_pred             HHHHHHhc-C-CCCcCHH----------------------------------HHHHHHHHHh-----------CHHHHHH
Confidence            99988776 2 3334444                                  3333333332           1234778


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      .++.++++++.+.+.|++. ++.+.+++++||+ +++..              ++..+...++ ++||.+
T Consensus       284 ~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~~-~~~~~--------------~~~~l~~~L~-~~gI~v  336 (370)
T PRK09105        284 RRAENAAVREDTIAWLKKK-GYKCTPSQANCFM-VDVKR--------------PAKAVADAMA-KQGVFI  336 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCCcCCCCCcEEE-EeCCC--------------CHHHHHHHHH-HCCcEE
Confidence            8889999999999999998 8888888888875 55531              2445555555 559998

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8e-37  Score=312.61  Aligned_cols=316  Identities=21%  Similarity=0.319  Sum_probs=245.5

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|++  |+.+++++.+.+..   ...++|++.. ..++|+++|++++      +++++|++|+|+++++..++..++++
T Consensus        30 ~~~~~~~p~~~~~a~~~~~~~---~~~~~y~~~~-~~~lr~~ia~~~~------~~~~~i~it~G~~~~l~~~~~~l~~~   99 (351)
T PRK14807         30 NETPFELPEEVIKNIQEIVKS---SQVNIYPDPT-AEKLREELARYCS------VVPTNIFVGNGSDEIIHLIMLAFINK   99 (351)
T ss_pred             CCCCCCCCHHHHHHHHHHhhc---CcccCCCCcc-HHHHHHHHHHHhC------CCcccEEEecCHHHHHHHHHHHhcCC
Confidence            45555  68999999888865   3456687654 5899999999972      67899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|++++.++.+++  |.+|++.+++.++..    ++++|++++||||||.+++.++
T Consensus       100 gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~~~~~----~~k~v~l~~p~NPtG~~~~~~~  169 (351)
T PRK14807        100 GD----VVIYPHPSFAMYSVYSKIAGAVEIPVKLKED--YTYDVGSFIKVIEKY----QPKLVFLCNPNNPTGSVIERED  169 (351)
T ss_pred             CC----EEEEeCCChHHHHHHHHHcCCeEEEeecCCC--CCCCHHHHHHHhhcc----CCCEEEEeCCCCCCCCCCCHHH
Confidence            98    9999999999999999999999999998743  689999999998753    7999999999999999999777


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.++++   +++.++|+||+|.++. + . ...+.   ...      ..++|+++||||.| |+||+|+||++   ++++
T Consensus       170 l~~l~~---~~~~~~ivDe~y~~~~-~-~-~~~~~---~~~------~~~vi~~~S~SK~~-~~~GlRiG~~v---~~~~  230 (351)
T PRK14807        170 IIKIIE---KSRGIVVVDEAYFEFY-G-N-TIVDV---INE------FENLIVLRTLSKAF-GLAGLRVGYAV---ANEN  230 (351)
T ss_pred             HHHHHH---hCCCEEEEeCcchhhc-c-c-chHHH---hhh------CCCEEEEecchHhc-ccchhceeeee---cCHH
Confidence            666654   5678899999998873 2 1 22221   111      23599999999999 79999999998   8999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+...... ...+.+                                  .|.++..++.         +   .++++
T Consensus       231 ~~~~~~~~~~~-~~~~~~----------------------------------~q~~~~~~l~---------~---~~~~~  263 (351)
T PRK14807        231 ILKYLNLVKSP-YNINSL----------------------------------SQVIALKVLR---------T---GVLKE  263 (351)
T ss_pred             HHHHHHHccCC-CCcCHH----------------------------------HHHHHHHHHh---------H---HHHHH
Confidence            99999876543 344555                                  4555554443         1   12455


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.++++++.+.+.|++++|+.+.++ +++|+|+++.               +++. +.+.|.++||.++++..+.  .
T Consensus       264 ~~~~~~~~r~~l~~~l~~~~g~~~~~~-~~~~~~i~~~---------------~~~~-~~~~l~~~gV~v~~~~~~~--~  324 (351)
T PRK14807        264 RVNYILNERERLIKELSKIPGIKVYPS-KTNFILVKFK---------------DADY-VYQGLLERGILVRDFSKVE--G  324 (351)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEECcC-CccEEEEEcC---------------CHHH-HHHHHHHCCEEEEECCCCC--C
Confidence            556778888889999988878877654 5667887664               2333 4556667899999865432  2


Q ss_pred             CccccccchhhhhhhHHHHHHHh
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAK  442 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~  442 (509)
                      ..++||+++..++++++++++-.
T Consensus       325 ~~~~iRis~~~~~~~~~l~~~l~  347 (351)
T PRK14807        325 LEGALRITVSSCEANDYLINGLK  347 (351)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHH
Confidence            45799999999999999998764

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.8e-38  Score=319.56  Aligned_cols=300  Identities=19%  Similarity=0.290  Sum_probs=236.2

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC-CCCCCeEEEcCCCChhHHHHHHh
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV-DGKKPGVLIPIPQYPLYSASLAE  123 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g-d~~~~~Vlv~~p~y~~~~~~~~~  123 (509)
                      ..++|+.... .++++.+++++    |  +++++|++|+|+++++..++++++++| +    .|+++.|+|..|...++.
T Consensus        50 ~~~~Yp~~~~-~~l~~~~a~~~----g--~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~----~vli~~P~y~~y~~~~~~  118 (351)
T PRK01688         50 TLNRYPECQP-KAVIENYAAYA----G--VKPEQVLVSRGADEGIELLIRAFCEPGKD----AILYCPPTYGMYSVSAET  118 (351)
T ss_pred             ccccCCCCCh-HHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHHHHHhcCCCCC----EEEEcCCCHHHHHHHHHH
Confidence            4566977654 78999999887    3  689999999999999999999999886 6    999999999999999999


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      .|++++.++.++  +|.+|++.+++.+ +     ++++|+++|||||||..++.+++++|++.|++ +++||+||+|.+|
T Consensus       119 ~G~~~~~v~~~~--~~~~d~~~l~~~~-~-----~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f  189 (351)
T PRK01688        119 IGVEIRTVPTLD--NWQLDLPAIADNL-D-----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEF  189 (351)
T ss_pred             cCCEEEEeecCC--CCCCCHHHHHHhc-c-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhc
Confidence            999999999865  3789999999887 3     69999999999999999999999999999976 6899999999998


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccc
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLP  283 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  283 (509)
                      ...     .++..+...      ..++++++||||.| |++|+|+||++   +++++++.+.+....+ +.+.+      
T Consensus       190 ~~~-----~s~~~~~~~------~~n~iv~rSfSK~~-glaGlRiGy~i---~~~~~i~~l~~~~~~~-~v~~~------  247 (351)
T PRK01688        190 CPQ-----ASLAGWLAE------YPHLVILRTLSKAF-ALAGLRCGFTL---ANEEVINLLLKVIAPY-PLSTP------  247 (351)
T ss_pred             CCC-----CChHHHHhh------CCCEEEEecchHhh-cCHHHHHhHHh---CCHHHHHHHHhccCCC-CCCHH------
Confidence            632     233333332      23599999999999 89999999998   8999999998765533 34444      


Q ss_pred             cccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee
Q psy13922        284 QLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC  363 (509)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  363 (509)
                                                  .+.+...++.         +...+++++.++.+.++++.+.+.|++++++..
T Consensus       248 ----------------------------~~~~a~~~L~---------~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  290 (351)
T PRK01688        248 ----------------------------VADIAAQALS---------PQGIAAMRERVAEINANRQWLIAALKEIPCVEQ  290 (351)
T ss_pred             ----------------------------HHHHHHHHHh---------cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence                                        2222223332         111233666778888889999999999877754


Q ss_pred             ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHH
Q psy13922        364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKA  441 (509)
Q Consensus       364 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~  441 (509)
                      +.|.++.|+|+++.               +++.+ .+.|.++||.++++..|..  ..+++|++++++++|++++++.
T Consensus       291 ~~ps~~nfi~~~~~---------------~~~~l-~~~L~~~gi~vr~~~~~~~--~~~~iRis~~~~~e~~~l~~al  350 (351)
T PRK01688        291 VFDSETNYILARFT---------------ASSAV-FKSLWDQGIILRDQNKQPG--LSNCLRITIGTREECQRVIDAL  350 (351)
T ss_pred             ECCCCCcEEEEEcC---------------CHHHH-HHHHHHCCeEEEECCCcCC--CCCeEEEeCCCHHHHHHHHHhh
Confidence            44556778887664               23343 4445578999998776533  2579999999999999999874

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=310.64  Aligned_cols=283  Identities=20%  Similarity=0.244  Sum_probs=220.5

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+.+     ..+|+++.|.+++|+++++++    +  +++++|++|+|+++++..+++ + .++     
T Consensus        36 ~~~~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~aia~~~----~--~~~~~I~it~Ga~~al~~~~~-l-~~~-----   97 (349)
T PRK07908         36 PPEWLRERLAARLGD-----LAAYPSTEDERRARAAVAARH----G--RTPDEVLLLAGAAEGFALLAR-L-RPR-----   97 (349)
T ss_pred             CCHHHHHHHHHHhhH-----hhcCCCccchHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHh-c-CCC-----
Confidence            367899999888765     345998899999999999998    3  678999999999999999888 4 453     


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .++++.|+|..+...++..|.+++.++.+++  |.+|++.+    ++     ++++++++|||||||.++|.+++.   +
T Consensus        98 ~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l----~~-----~~~~i~l~np~NPTG~~~~~~~l~---~  163 (349)
T PRK07908         98 RAAVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAV----PD-----DADLVVIGNPTNPTSVLHPAEQLL---A  163 (349)
T ss_pred             eEEEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHh----cc-----CCCEEEEcCCCCCCCCCcCHHHHH---H
Confidence            6788899999999999999999999998754  68888754    33     689999999999999999976555   4


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+ ++.++|+||+|.++..+   ...++.+.  +      ..++++++||||.| |++|+|+||++   .++++++.+.
T Consensus       164 l~~-~~~~iIvDe~y~~~~~~---~~~~l~~~--~------~~~~i~i~S~SK~~-~l~GlRiG~~~---~~~~~~~~~~  227 (349)
T PRK07908        164 LRR-PGRILVVDEAFADAVPG---EPESLAGD--D------LPGVLVLRSLTKTW-SLAGLRVGYAL---GAPDVLARLT  227 (349)
T ss_pred             HHh-cCCEEEEECcchhhccC---Cccccccc--c------CCCEEEEeeccccc-CCccceeeeee---cCHHHHHHHH
Confidence            554 57889999999998532   23333321  1      22499999999999 79999999998   7899999988


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      +.... +..+.+                                  .+.++..++.         ....++++++++.++
T Consensus       228 ~~~~~-~~~~~~----------------------------------~~~a~~~~~~---------~~~~~~~~~~~~~~~  263 (349)
T PRK07908        228 RGRAH-WPVGTL----------------------------------QLEAIAACCA---------PRAVAEAAADAARLA  263 (349)
T ss_pred             hcCCC-CCccHH----------------------------------HHHHHHHHhc---------ccchHHHHHHHHHHH
Confidence            76543 333444                                  3344443332         112234677889999


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.+.+.|+++ ++++.+|.+++|+|++++               +.+ .+.+.++++||.+.||..|+.
T Consensus       264 ~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~---------------~~~-~~~~~l~~~gI~v~~g~~f~~  318 (349)
T PRK07908        264 ADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP---------------DAE-LLRKRLRERGIAVRRGDTFPG  318 (349)
T ss_pred             HHHHHHHHHHHhC-CcEeccCCCceEEEEECC---------------cHH-HHHHHHHhCCEEEEECCCCCC
Confidence            9999999999998 888888889999998765               122 356778889999999998854

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-36  Score=312.08  Aligned_cols=291  Identities=16%  Similarity=0.270  Sum_probs=223.5

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.+++  |+.+++++...      ...+.|++. +..+||++++++++      +++++|++|+|+++++..++..++++
T Consensus        60 n~~p~~~~~~v~~a~~~~------~~~~~Yp~~-~~~~lr~~ia~~~~------~~~~~I~~t~Ga~~~i~~~~~~~~~~  126 (380)
T PLN03026         60 NENPYGPPPEVLEALGNM------KFPYVYPDP-ESRRLRAALAEDSG------LESENILVGCGADELIDLLMRCVLDP  126 (380)
T ss_pred             CCCCCCCCHHHHHHHHhh------HhhccCCCC-CHHHHHHHHHHHhC------cChhhEEEcCCHHHHHHHHHHHhcCC
Confidence            44443  56777776432      123448654 67899999999983      67899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..|...++..|++++.++.++  +|.+|++.|++.+...    ++++|++++||||||.+++.++
T Consensus       127 gd----~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~----~~~~v~l~~P~NPTG~~~~~~~  196 (380)
T PLN03026        127 GD----KIIDCPPTFGMYVFDAAVNGAEVIKVPRTP--DFSLDVPRIVEAVETH----KPKLLFLTSPNNPDGSIISDDD  196 (380)
T ss_pred             CC----EEEEcCCChHHHHHHHHHcCCEEEEeecCC--CCCcCHHHHHHHHhcc----CCcEEEEeCCCCCCCCCCCHHH
Confidence            98    999999999999999999999999999854  4789999999998432    7999999999999999999998


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|++++    ++||+||+|.+|.+.+     +.......      ..++|+++||||.| |++|+|+||++   ++++
T Consensus       197 l~~l~~~~----~~vi~DeaY~~~~~~~-----~~~~~~~~------~~~viv~~SfSK~~-glaGlRiGy~~---~~~~  257 (380)
T PLN03026        197 LLKILELP----ILVVLDEAYIEFSTQE-----SRMKWVKK------YDNLIVLRTFSKRA-GLAGLRVGYGA---FPLS  257 (380)
T ss_pred             HHHHHhcC----CEEEEECcchhhcCCc-----chHHHHHh------CCCEEEEecchHhh-cCccccceeee---cCHH
Confidence            88888753    8999999999987532     11122211      24599999999999 89999999998   8999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+.... ++.+.+                                  .|.++..++..        .   +++++
T Consensus       258 ~i~~l~~~~~~-~~~~~~----------------------------------~q~aa~~aL~~--------~---~~~~~  291 (380)
T PLN03026        258 IIEYLWRAKQP-YNVSVA----------------------------------AEVAACAALSN--------P---KYLED  291 (380)
T ss_pred             HHHHHHHhcCC-CCCCHH----------------------------------HHHHHHHHhhC--------H---HHHHH
Confidence            99999877653 345555                                  45555444431        1   23677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG  414 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  414 (509)
                      .++.++++++.+.+.|++++++.+ .+.+++|+|+++.-           +. ++.++. ..|.++||.++++..
T Consensus       292 ~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~-----------~~-~~~~~~-~~l~~~gI~v~~~~~  352 (380)
T PLN03026        292 VKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTS-----------GR-DAKKLK-EDLAKMGVMVRHYNS  352 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCC-----------CC-CHHHHH-HHHHHCCeEEEECCC
Confidence            888999999999999998854554 56677888876641           11 344544 444478999998754

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-36  Score=309.56  Aligned_cols=317  Identities=18%  Similarity=0.267  Sum_probs=241.9

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|++  |+.+.+++.+.+..   . ..+|++. |.++||+++|++++      +++++|++|+|+++++.+++++++++
T Consensus        32 ~~~~~~~~~~~~~a~~~~~~~---~-~~~y~~~-~~~~lr~aia~~~~------~~~~~I~it~G~~~al~~~~~~l~~~  100 (353)
T PRK05387         32 NENPYPPSPKVLEAIRAALGD---D-LRLYPDP-NADALRQAIAAYYG------LDPEQVFVGNGSDEVLAHAFLAFFNH  100 (353)
T ss_pred             CCCCCCCCHHHHHHHHHHhhh---h-hhcCCCC-cHHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHHhcCC
Confidence            45555  56888888887775   2 3459766 55999999999983      67899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..|...++..|.+++.++.++  +|.+|++.++    +     ..+++++++||||||.++|.++
T Consensus       101 gd----~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~----~-----~~~~v~~~~P~NPtG~~~~~~~  165 (353)
T PRK05387        101 DR----PLLFPDITYSFYPVYAGLYGIPYEEIPLDD--DFSIDVEDYL----R-----PNGGIIFPNPNAPTGIALPLAE  165 (353)
T ss_pred             CC----EEEEeCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHH----h-----cCCEEEEeCCCCCCCCCCCHHH
Confidence            98    999999999999999999999999999864  3688999885    2     3678899999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++++  ++++|+||+|.+|.  +. .   ...+...      ..++++++||||.| |++|+|+||++   ++++
T Consensus       166 ~~~l~~~~~--~~~livDe~y~~~~--~~-~---~~~~~~~------~~~~i~~~S~SK~~-~~~GlR~G~~~---~~~~  227 (353)
T PRK05387        166 IERILAANP--DSVVVIDEAYVDFG--GE-S---AIPLIDR------YPNLLVVQTFSKSR-SLAGLRVGFAI---GHPE  227 (353)
T ss_pred             HHHHHHhCC--CcEEEEeCcccccC--Cc-c---hHHHHhh------CCCEEEEEehhHhh-cchhhhceeee---cCHH
Confidence            999988653  99999999998763  21 1   1122111      23489999999999 79999999998   7999


Q ss_pred             HHHHHHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        260 VKAMLHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       260 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +++++.+....  .++.+.+                                  .|.++..++..        .   ++.
T Consensus       228 ~~~~l~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~~--------~---~~~  262 (353)
T PRK05387        228 LIEALNRVKNSFNSYPLDRL----------------------------------AQAGAIAAIED--------E---AYF  262 (353)
T ss_pred             HHHHHHHhhccCCCCCcCHH----------------------------------HHHHHHHHhcC--------H---HHH
Confidence            99999877642  2345555                                  55555444431        1   235


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.+.++++.+.+.|+++ |+.+. +.+++|+|++++            +. ++.+++ +.|.++||.+++   |..
T Consensus       263 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~------------~~-~~~~~~-~~l~~~gi~v~~---~~~  323 (353)
T PRK05387        263 EETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHP------------SH-DAAELA-AKLRERGIIVRH---FNK  323 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECC------------CC-CHHHHH-HHHHHCCEEEEE---CCC
Confidence            667788889999999999998 77765 456678887654            11 344544 445678999974   322


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                      .                                               ...+        ++|++++ +++++++++++|
T Consensus       324 ~-----------------------------------------------~~~~--------~iRis~~-~~~~~~~~~~~L  347 (353)
T PRK05387        324 P-----------------------------------------------RIDQ--------FLRITIG-TDEEMEALVDAL  347 (353)
T ss_pred             C-----------------------------------------------CCCC--------eEEEEeC-CHHHHHHHHHHH
Confidence            0                                               1112        8999998 568899999999


Q ss_pred             HHHHH
Q psy13922        498 REFHE  502 (509)
Q Consensus       498 ~~~~~  502 (509)
                      ++++.
T Consensus       348 ~~~~~  352 (353)
T PRK05387        348 KEILA  352 (353)
T ss_pred             HHHhh
Confidence            88764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=278.34  Aligned_cols=378  Identities=20%  Similarity=0.273  Sum_probs=279.5

Q ss_pred             hHHHHHHHHhhc----CCCCC----CCCCCCHHHHHH----HHHHHhcc-cCCCcccCCCCcchHHHHHHHHHHHhhhcC
Q psy13922          5 FSLSLQVLALVS----LPQLF----DDPRFPDDVKQR----AQAVLDGC-RGQSVGSYTDSPGIEIIRRHVAQYISRRDG   71 (509)
Q Consensus         5 ~~~~~~~~~~~~----~~~~~----~~~~~p~~v~~a----~~~~l~~~-~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g   71 (509)
                      -|+++++|.+..    .|+.+    |+|..-|++.+.    ..+.+.+. ......+|..++|...|.+++++.++++||
T Consensus        13 ~sGi~~lMdDl~d~Lrt~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg   92 (417)
T COG3977          13 HSGITQLMDDLNDGLRTPGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG   92 (417)
T ss_pred             hhhHHHHHHHHHhhccCCCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence            468889988774    57755    677653443333    33344432 133456799999999999999999999999


Q ss_pred             CCCCCCcEEEeCCHHHHHHHHHHHhhcC-CCCCCCeEEEc-CCCChhHHHHHHhcCCEEEEEe----cCCC--CCCCCCH
Q psy13922         72 QPADWQDVILSAGASDGIKSVLKLLIED-VDGKKPGVLIP-IPQYPLYSASLAEFNMEQIGYY----LDES--KQWGLPI  143 (509)
Q Consensus        72 ~~~~~~~i~~t~G~~~al~~~~~~l~~~-gd~~~~~Vlv~-~p~y~~~~~~~~~~g~~~~~v~----~~~~--~~~~~d~  143 (509)
                      |+++++||.+|+|++.++..++..|... .|+..+.|+.| .|.|.+|.++.-.-.. .+.+.    +.+.  .+|++|.
T Consensus        93 wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~-fVs~kP~iel~~~g~FKY~vDF  171 (417)
T COG3977          93 WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDL-FVSAKPNIELLPAGQFKYHVDF  171 (417)
T ss_pred             CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccc-eeeccCCcccccccceeeccCH
Confidence            9999999999999999999999998543 23334456665 8999998765322111 12221    1222  3568898


Q ss_pred             HHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCC
Q psy13922        144 SELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGE  223 (509)
Q Consensus       144 ~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~  223 (509)
                      ++|.  +.+     .+.+|+++.|.||||.+++++|+.+|.++|++||+.+|+|.+|+.       +++.+.  +.++..
T Consensus       172 ~~l~--i~e-----~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~-------PFP~ii--fsd~~~  235 (417)
T COG3977         172 EHLH--IGE-----STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV-------PFPGII--FSDATP  235 (417)
T ss_pred             HHcc--ccc-----ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC-------CCCcee--cccccc
Confidence            8885  344     699999999999999999999999999999999999999999975       232221  111111


Q ss_pred             CCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHh
Q psy13922        224 PYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAV  302 (509)
Q Consensus       224 ~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (509)
                      .+ +.|++.+.|+||.  |+||.|+|.++   ++++++..+.+... ....++..                         
T Consensus       236 ~w-~~NiilC~SLSK~--GLPG~R~GIiI---ane~viqaitnmn~iisLap~~~-------------------------  284 (417)
T COG3977         236 LW-NENIILCMSLSKL--GLPGSRCGIII---ANEKVIQAITNMNGIISLAPGRM-------------------------  284 (417)
T ss_pred             cC-CCCEEEEeehhhc--CCCCcceeEEE---ccHHHHHHHHhccceeeecCCCc-------------------------
Confidence            11 3468999999998  89999999998   99999999988766 34455555                         


Q ss_pred             hhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCeeccCCceeEEeecCCCC
Q psy13922        303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS-IE--GMSCNPVQGAMYAFPQMKLP  379 (509)
Q Consensus       303 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~~~~~~~~~~  379 (509)
                               +++.+..+++     ++...+..  -+-.+..++.+.+.....|+. +|  .+.++.|+|.+|+|+-|+  
T Consensus       285 ---------G~Aia~~mie-----~gdl~rls--eqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~--  346 (417)
T COG3977         285 ---------GPAIAAEMIE-----SGDLLRLS--EQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFK--  346 (417)
T ss_pred             ---------cHHHHHHHhh-----cchHHHHH--HHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhc--
Confidence                     6666666666     33343332  234556677777777777766 44  356679999999998775  


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhc
Q psy13922        380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLER  459 (509)
Q Consensus       380 ~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (509)
                                .+..+.......|++.|+.++||+.|.+                                          
T Consensus       347 ----------dLPItt~~LYq~LKa~Gvl~VPG~~FFp------------------------------------------  374 (417)
T COG3977         347 ----------DLPITTEELYQRLKARGVLMVPGHYFFP------------------------------------------  374 (417)
T ss_pred             ----------cCCCCHHHHHHHHHhCeEEEecccccCC------------------------------------------
Confidence                      2223333367889999999999999987                                          


Q ss_pred             ccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHHHhh
Q psy13922        460 TGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                             |....|++.+.|+|+++..++++|++++.+|.+.+++..++
T Consensus       375 -------Gl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~yq~  415 (417)
T COG3977         375 -------GLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVERAYQE  415 (417)
T ss_pred             -------CCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                   44466788899999999999999999999999999988775

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.6e-35  Score=304.86  Aligned_cols=294  Identities=17%  Similarity=0.281  Sum_probs=229.6

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..     ..+|++..+ .++|++++++++      +++++|++|+|+++++..++..++++||    
T Consensus        46 ~~~~~~~a~~~~~~~-----~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~~l~~~gd----  109 (367)
T PRK02731         46 PSPKAIEAIRAAADE-----LHRYPDGSG-FELKAALAEKFG------VDPERIILGNGSDEILELLARAYLGPGD----  109 (367)
T ss_pred             CCHHHHHHHHHHHHh-----hcCCCCCcH-HHHHHHHHHHhC------cCHHHEEEcCCHHHHHHHHHHHhcCCCC----
Confidence            367788888887754     345887665 789999999982      5678999999999999999999998888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|..+...++..|.+++.++.+   ++.+|++.+++.+++     ++++|++++||||||.+++.+++.+|++
T Consensus       110 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~  181 (367)
T PRK02731        110 EVIYSEHGFAVYPIAAQAVGAKPVEVPAK---DYGHDLDAMLAAVTP-----RTRLVFIANPNNPTGTYLPAEEVERFLA  181 (367)
T ss_pred             EEEEecCCHHHHHHHHHHcCCeEEEeccc---CCCCCHHHHHHHhCC-----CCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            99999999999998889999999999874   368999999998875     7999999999999999999999999998


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      .|+ +|+++|+||+|.++.+++. ...++ .... .     ..++++++||||.| |++|+|+||++   +++++++.+.
T Consensus       182 ~~~-~~~~li~De~y~~~~~~~~-~~~~~-~~~~-~-----~~~~i~~~S~SK~~-g~~G~RiG~l~---~~~~~~~~l~  248 (367)
T PRK02731        182 GVP-PDVLVVLDEAYAEYVRRKD-YEDGL-ELVA-K-----FPNVVVTRTFSKAY-GLAGLRVGYGI---APPEIIDALN  248 (367)
T ss_pred             hCC-CCcEEEEECcHHHhccCcC-cccHH-HHHh-h-----cCCEEEEeeehHhh-cCcccceeeee---CCHHHHHHHH
Confidence            875 6999999999999887532 22223 2221 1     23489999999999 79999999998   7899999988


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      +.... ++.+.+                                  .|.++..+++.           .+++++.++.++
T Consensus       249 ~~~~~-~~~~~~----------------------------------~~~~a~~~l~~-----------~~~~~~~~~~~~  282 (367)
T PRK02731        249 RVRQP-FNVNSL----------------------------------ALAAAVAALDD-----------DAFVEKSRALNA  282 (367)
T ss_pred             HccCC-CCCCHH----------------------------------HHHHHHHHhCC-----------HHHHHHHHHHHH
Confidence            76543 234444                                  45444444431           223677888899


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.+.+.|++. |+.+.+ .++.|+|++++.           +. ++.+++ ..|.++||.++|+..|+.
T Consensus       283 ~~~~~l~~~L~~~-g~~~~~-~~g~~~~i~~~~-----------~~-~~~~~~-~~L~~~gI~v~~~~~~~~  339 (367)
T PRK02731        283 EGMAWLTEFLAEL-GLEYIP-SVGNFILVDFDD-----------GK-DAAEAY-QALLKRGVIVRPVAGYGL  339 (367)
T ss_pred             HHHHHHHHHHHHC-CCccCC-CCceEEEEECCC-----------CC-CHHHHH-HHHHHCCEEEEeCCCCCC
Confidence            9999999999988 777764 456788977631           11 344544 455678999999887653

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-35  Score=301.88  Aligned_cols=304  Identities=17%  Similarity=0.259  Sum_probs=233.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|++  |+.+++++.+.+..   +.++.|++. |.++||+++++++++.+   +++++|++|+|++++|..+++.+   
T Consensus        27 ~~~~~~~p~~~~~~~~~~~~~---~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~i~~~~~~~---   96 (335)
T PRK14808         27 NENPFPFPEDLVDEVFRRLNS---DTLRIYYDS-PDEELIEKILSYLDTDF---LSKNNVSVGNGADEIIYVMMLMF---   96 (335)
T ss_pred             CCCCCCCCHHHHHHHHHHhhh---hhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHHHHHHHHHh---
Confidence            56666  67899998887765   445557655 78999999999997652   68999999999999999999888   


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                       |    .|+++.|+|..|...++..|++++.+|.+++  +.++...    + +     ++++++++|||||||.++|+++
T Consensus        97 -d----~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~----~-~-----~~~~i~i~nP~NPTG~~~s~~~  159 (335)
T PRK14808         97 -D----RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN----V-G-----EGDVVFIPNPNNPTGHVFEREE  159 (335)
T ss_pred             -C----cEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH----c-c-----CCCEEEEeCCCCCCCCCcCHHH
Confidence             5    8999999999999999999999999998754  3444221    2 2     4789999999999999999998


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+    +++++||+||+|.+|.  +. ..   ......      ..++|+++||||.| |++|+|+||++   ++++
T Consensus       160 l~~l~----~~~~~ii~DE~Y~~f~--~~-~~---~~~~~~------~~~vi~~~S~SK~~-~l~GlRvG~~v---~~~~  219 (335)
T PRK14808        160 IERIL----KTGAFVALDEAYYEFH--GE-SY---VDLLKK------YENLAVIRTFSKAF-SLAAQRIGYVV---SSEK  219 (335)
T ss_pred             HHHHH----hcCCEEEEECchhhhc--CC-ch---HHHHHh------CCCEEEEEechhhc-cCcccceEEEE---eCHH
Confidence            88886    4799999999999974  21 22   222222      22599999999999 79999999998   7899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+... .++.+.+                                  .|.++..+++           ..++..+
T Consensus       220 ~~~~l~~~~~-~~~~~~~----------------------------------~q~a~~~~l~-----------~~~~~~~  253 (335)
T PRK14808        220 FIDAYNRVRL-PFNVSYV----------------------------------SQMFAKVALD-----------HREIFEE  253 (335)
T ss_pred             HHHHHHHhcC-CCCCCHH----------------------------------HHHHHHHHHh-----------CHHHHHH
Confidence            9999987663 3455566                                  4555444443           1123556


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.+.++++.+.+.|++. |+.+.+++|+ |+|+++..            . +... +.+.|.++||.+++   |    
T Consensus       254 ~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~l~~------------~-~~~~-~~~~l~~~Gi~V~~---~----  310 (335)
T PRK14808        254 RTKFIVEERERMKSALREM-GYRITDSRGN-FVFIFMEK------------E-EKER-LLEHLRAKNIAVRS---F----  310 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCEECCCCCe-EEEEeCCC------------c-cHHH-HHHHHHHCCeEEEE---C----
Confidence            6677778888999999988 8888888665 55866641            1 1233 46677788999994   3    


Q ss_pred             CccccccchhhhhhhHHHHHHHh
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAK  442 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~  442 (509)
                       .+++|++++.+++|++++++..
T Consensus       311 -~~~~Risi~~~~~~~~~~~~l~  332 (335)
T PRK14808        311 -REGVRITIGKREENDMILKELE  332 (335)
T ss_pred             -CCCeEEecCCHHHHHHHHHHHH
Confidence             2589999999999999998764

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=3.2e-35  Score=300.18  Aligned_cols=295  Identities=22%  Similarity=0.375  Sum_probs=231.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.+.+  |+.+++++.+++..     ..+|+++.+ +++|++++++++      +++++|++|+|+++++..++.+++++
T Consensus        27 ~~~~~~~~~~~~~a~~~~~~~-----~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~~~G~~~~l~~~~~~l~~~   94 (346)
T TIGR01141        27 NENPFGPPPKAKEALRAEADK-----LHRYPDPDP-AELKQALADYYG------VDPEQILLGNGSDEIIELLIRAFLEP   94 (346)
T ss_pred             CCCCCCCCHHHHHHHHHhHHH-----hhcCCCCCH-HHHHHHHHHHhC------cChHHEEEcCCHHHHHHHHHHHhcCC
Confidence            45554  67899999887644     235888777 899999999994      56789999999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|++++.++.+++  +.+|++.+++.+..     ++++|++++|+||||.+++.++
T Consensus        95 gd----~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~-----~~~~v~l~~p~NptG~~~~~~~  163 (346)
T TIGR01141        95 GD----AVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDD-----KPKLVFLCSPNNPTGNLLSRSD  163 (346)
T ss_pred             CC----EEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCC-----CCCEEEEeCCCCCCCCCCCHHH
Confidence            88    9999999999998889999999999998765  57899999998755     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.++++.|+ +|+++|+|++|.++...+     +.......      ..++++++|+||.+ |++|+|+||++   .+++
T Consensus       164 ~~~l~~~~~-~~~~ii~D~~y~~~~~~~-----~~~~~~~~------~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~  227 (346)
T TIGR01141       164 IEAVLERTP-EDALVVVDEAYGEFSGEP-----STLPLLAE------YPNLIVLRTLSKAF-GLAGLRIGYAI---ANAE  227 (346)
T ss_pred             HHHHHHhCC-CCcEEEEECchhhhcCCc-----cHHHHHhh------CCCEEEEehhhHhh-hchhhhceeee---cCHH
Confidence            999999887 799999999999776431     11111111      12489899999999 78999999998   7899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++++...... .+.+.+                                  .|.++..+++.        .   .+.++
T Consensus       228 ~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~~~l~~--------~---~~~~~  261 (346)
T TIGR01141       228 IIDALNKVRAP-FNLSRL----------------------------------AQAAAIAALRD--------D---DFIEK  261 (346)
T ss_pred             HHHHHHhccCC-CCCCHH----------------------------------HHHHHHHHhCC--------H---HHHHH
Confidence            99998876543 334444                                  34444333330        1   14677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      .++.++++++.+.+.|.+++|+++.+ .+++|+|++++            +  ++++++ ..|.++||.+.||..|+.
T Consensus       262 ~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~------------~--~~~~~~-~~L~~~gI~v~~g~~f~~  323 (346)
T TIGR01141       262 TVEEINAERERLYDGLKKLPGLEVYP-SDANFVLIRFP------------R--DADALF-EALLEKGIIVRDLNSYPG  323 (346)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEECC-CcCCEEEEecC------------C--CHHHHH-HHHHHCCeEEEeCCCcCC
Confidence            88899999999999999888888654 45678887665            1  244444 455578999999988754

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2e-35  Score=302.54  Aligned_cols=270  Identities=19%  Similarity=0.320  Sum_probs=209.3

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC-CCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV-DGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g-d~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      .++|++.. ..+||+++|+++    |  +++++|++|+|+++++.+++++++++| |    .|+++.|+|..|...++..
T Consensus        54 ~~~Yp~~~-~~~Lr~aia~~~----~--~~~~~I~it~Gs~~~i~~~~~~~~~~g~d----~vlv~~P~y~~y~~~~~~~  122 (354)
T PRK04635         54 LNRYPECQ-PPELINAYSAYA----G--VAPEQILTSRGADEAIELLIRAFCEPGQD----SIACFGPTYGMYAISAETF  122 (354)
T ss_pred             hccCCCCC-HHHHHHHHHHHh----C--cCHHHEEEeCCHHHHHHHHHHHhcCCCCC----eEEEcCCChHHHHHHHHHc
Confidence            45598764 699999999987    3  789999999999999999999999888 7    9999999999999999999


Q ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       125 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      |++++.+|.+++  |.+|++.++. + .     ++++|+++|||||||.+++.+++++|+++|+  +++||+||+|.+|.
T Consensus       123 g~~v~~v~~~~~--~~~~~~~l~~-~-~-----~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~  191 (354)
T PRK04635        123 NVGVKALPLTAD--YQLPLDYIEQ-L-D-----GAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFC  191 (354)
T ss_pred             CCEEEEEecCCC--CCCCHHHHHh-c-c-----CCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhc
Confidence            999999998743  6889988863 3 3     7999999999999999999999999999876  49999999999876


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccc
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQ  284 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  284 (509)
                      ..     .+..++...      ..++++++||||.| |++|+|+||++   +++++++.+.+.... .+.+.+       
T Consensus       192 ~~-----~s~~~~~~~------~~~~iv~~S~SK~~-~l~GlRlG~~i---~~~~~~~~l~~~~~~-~~~~~~-------  248 (354)
T PRK04635        192 PE-----YSVADLLAS------YPNLVVLRTLSKAF-ALAGARCGFTL---ANEELIEILMRVIAP-YPVPLP-------  248 (354)
T ss_pred             cC-----cchHHHHhh------CCCEEEEechHHHh-hhhHHHHhhhh---CCHHHHHHHHhhcCC-CCCCHH-------
Confidence            32     233333222      23489999999999 79999999998   799999998765543 334444       


Q ss_pred             ccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec
Q psy13922        285 LFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN  364 (509)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  364 (509)
                                                 .+.+...++.         +...+++++.++.++++++.+.+.|++++++++.
T Consensus       249 ---------------------------~~~~a~~~l~---------~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~  292 (354)
T PRK04635        249 ---------------------------VSEIATQALS---------EAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL  292 (354)
T ss_pred             ---------------------------HHHHHHHHHh---------cccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC
Confidence                                       2222222222         0112235666778899999999999998668877


Q ss_pred             cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       365 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      +++| .|+|++++               +... +.+.++++||.++++.
T Consensus       293 ~~~g-~f~~~~~~---------------~~~~-~~~~l~~~gv~v~~~~  324 (354)
T PRK04635        293 EGNG-NYVLAKFD---------------DVDA-VFKALWDAGIVARAYK  324 (354)
T ss_pred             CCCC-cEEEEECC---------------CHHH-HHHHHHHCCEEEEECC
Confidence            7765 57776664               1233 3567788999998643

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.7e-35  Score=297.12  Aligned_cols=302  Identities=19%  Similarity=0.309  Sum_probs=231.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+++++.+++..   .....|++ .|.+++|++++++++      +++++|++|+|+++++..++..+  +
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~-~g~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~~~--~   93 (337)
T PRK03967         26 NENPFDLPEELKEEIFEELKR---VPFNRYPH-ITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVKLF--E   93 (337)
T ss_pred             CCCCCCCCHHHHHHHHHHhhc---CccccCCC-CCHHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHHHh--C
Confidence            34444  57899998888865   23556864 688999999999993      67899999999999999988877  6


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..|...++..|.+++.++.++  +|.+|++.+++.+ .     +++++++++||||||.+++.++
T Consensus        94 gd----~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~-----~~~~v~~~~P~NPtG~~~~~~~  161 (337)
T PRK03967         94 GK----HIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-K-----NASAVFICSPNNPTGNLQPEEE  161 (337)
T ss_pred             CC----eEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-c-----CCCEEEEeCCCCCCCCCCCHHH
Confidence            77    999999999999988999999999999874  3689999998764 2     6889999999999999999777


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.+++    ++++++|+||+|.+|...   ..   ......      ..++|+++||||.| |+||+|+||++   ++++
T Consensus       162 l~~i~----~~~~~ii~De~y~~~~~~---~~---~~~~~~------~~~vi~l~S~SK~~-~l~GlRiG~iv---~~~~  221 (337)
T PRK03967        162 ILKVL----ETGKPVVLDEAYAEFSGK---SL---IGLIDE------YPNLILLRTFSKAF-GLAGIRAGYAI---ANEE  221 (337)
T ss_pred             HHHHH----hcCCEEEEECchhhhccc---ch---HHHHhh------CCCEEEEecchHhh-cchhhhheeee---cCHH
Confidence            66654    479999999999987521   12   222111      23499999999999 79999999998   7899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+.... ++.+.+                                  .|.++..++..       .+    +..+
T Consensus       222 ~i~~~~~~~~~-~~~~~~----------------------------------~q~~~~~~l~~-------~~----~~~~  255 (337)
T PRK03967        222 IIDALYRIKPP-FSLNIL----------------------------------TMKIVRLALDH-------YD----LIEE  255 (337)
T ss_pred             HHHHHHhhcCC-CCCCHH----------------------------------HHHHHHHHHhC-------HH----HHHH
Confidence            99999887653 355666                                  56665555431       11    2444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.+.++++.+.+.|.+.     ..+.+++|+|+++.                    +...|.++||.++++...    
T Consensus       256 ~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~--------------------~~~~l~~~gi~v~~~~~~----  306 (337)
T PRK03967        256 RIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD--------------------AYDYLLENGIVVRKLSGR----  306 (337)
T ss_pred             HHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH--------------------HHHHHHHCCEEEEeCCCC----
Confidence            4455566777788888764     23578889996553                    235555679999986532    


Q ss_pred             CccccccchhhhhhhHHHHHHHh
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAK  442 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~  442 (509)
                      ..+++|++++.+.++++++++..
T Consensus       307 ~~~~~Ri~~~~~~~~~~l~~~l~  329 (337)
T PRK03967        307 LEGHIRVTVGKREENDEFIKALK  329 (337)
T ss_pred             CCCeEEEecCCHHHHHHHHHHHH
Confidence            34699999999999999998764

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.2e-34  Score=295.71  Aligned_cols=316  Identities=18%  Similarity=0.312  Sum_probs=236.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE-eCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL-SAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~   98 (509)
                      +.+++  |+.+++++.+.+..     ...|++..+ +++|+++++++    |  +++++|++ |+|+++++..+++.+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-----~~~y~~~~~-~~lr~~ia~~~----~--~~~~~i~~~~~Ga~~~i~~~~~~~~~  109 (361)
T PRK00950         42 NENPLGPSPKAVEAIEKELSK-----IHRYPEPDA-PELREALSKYT----G--VPVENIIVGGDGMDEVIDTLMRTFID  109 (361)
T ss_pred             CCCCCCCCHHHHHHHHHHHHh-----hcCCCCCCH-HHHHHHHHHHh----C--CCHHHEEEeCCCHHHHHHHHHHHhcC
Confidence            44444  56788888777665     234877665 89999999998    3  57889999 79999999999999988


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|..+...++..|++++.++.++  +|.+|++.+++.+..     +++++++++|+||||.+++.+
T Consensus       110 ~gd----~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~~~-----~~~~v~~~~p~nptG~~~~~~  178 (361)
T PRK00950        110 PGD----EVIIPTPTFSYYEISAKAHGAKPVYAKREE--DFSLDVDSVLNAITE-----KTKVIFLCTPNNPTGNLIPEE  178 (361)
T ss_pred             CCC----EEEEcCCChHHHHHHHHHcCCEEEEeecCC--CCCcCHHHHHHHhcc-----CCCEEEEeCCCCCCCCCcCHH
Confidence            888    999999999999999999999999998543  478999999998876     789999999999999999966


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++.+   +|+++|+++|+||+|.+|. + . ..   ..+..+      ..++++++||||.+ |++|+|+||++   .++
T Consensus       179 ~l~~---l~~~~~~~li~De~y~~~~-~-~-~~---~~~~~~------~~~vi~~~S~SK~~-g~~GlRiG~~~---~~~  239 (361)
T PRK00950        179 DIRK---ILESTDALVFVDEAYVEFA-E-Y-DY---TPLALE------YDNLIIGRTFSKVF-GLAGLRIGYGF---VPE  239 (361)
T ss_pred             HHHH---HHHHCCcEEEEECchhhhC-c-c-ch---HHHHHh------cCCEEEEEeehHhh-cCchhhcchhc---CCH
Confidence            5555   5668899999999999875 1 1 12   222222      12489999999999 79999999998   799


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      ++++.+.+....+ +.+.+                                  .+.++..++..        .   ++++
T Consensus       240 ~~~~~~~~~~~~~-~~~~~----------------------------------~~~~a~~~l~~--------~---~~~~  273 (361)
T PRK00950        240 WLIDYYMRAKTPF-SLTRL----------------------------------SQAAAIAALSD--------K---EYIE  273 (361)
T ss_pred             HHHHHHHHhcCCC-CCCHH----------------------------------HHHHHHHHhcC--------H---HHHH
Confidence            9999888765533 34444                                  34333333321        1   2356


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      +.++.++++++.+.+.|+    +.+. +.+++|+|+++.            +. ++.+++..+ .++||.++||..|.. 
T Consensus       274 ~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~------------~~-~~~~~~~~l-~~~gv~v~~~~~f~~-  333 (361)
T PRK00950        274 KSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVT------------PM-TAKEFCEEL-LKRGVIVRDCTSFRG-  333 (361)
T ss_pred             HHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECC------------CC-CHHHHHHHH-HHCCEEEeeCCccCC-
Confidence            677778888888887775    3443 456788897773            21 345544454 467999999887754 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     .+.+        ++|+|++ ++++++++++.|+
T Consensus       334 -----------------------------------------------~~~~--------~lRis~~-~~~~~~~l~~~L~  357 (361)
T PRK00950        334 -----------------------------------------------LGDY--------YIRVSIG-TFEENERFLEILK  357 (361)
T ss_pred             -----------------------------------------------CCCC--------eEEEECC-CHHHHHHHHHHHH
Confidence                                                           2323        8999998 5678888888888


Q ss_pred             HHH
Q psy13922        499 EFH  501 (509)
Q Consensus       499 ~~~  501 (509)
                      +++
T Consensus       358 ~il  360 (361)
T PRK00950        358 EIV  360 (361)
T ss_pred             HHh
Confidence            765

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=1.4e-34  Score=296.12  Aligned_cols=316  Identities=19%  Similarity=0.275  Sum_probs=240.2

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+.+++.+.+..     ...|+ ..|..++|++++++++      +++++|++|+|+++++..++..++++
T Consensus        30 ~~~~~~~~~~~~~a~~~~~~~-----~~~y~-~~g~~~lr~~ia~~~~------~~~~~I~~~~G~~~~l~~~~~~~~~~   97 (352)
T PRK03321         30 NETPFGPLPSVRAAIARAAAG-----VNRYP-DMGAVELRAALAEHLG------VPPEHVAVGCGSVALCQQLVQATAGP   97 (352)
T ss_pred             CCCCCCCCHHHHHHHHHHHHh-----cCcCC-CCcHHHHHHHHHHHhC------cCHHHEEECCCHHHHHHHHHHHhcCC
Confidence            44554  56888888877654     34475 4688999999999993      67889999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|+++.|+|..+...++..|.+++.++.+++  +.+|++.+++.++.     +++++++++||||||.+++.++
T Consensus        98 gd----~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~  166 (352)
T PRK03321         98 GD----EVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITD-----RTRLIFVCNPNNPTGTVVTPAE  166 (352)
T ss_pred             CC----EEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhcc-----CCCEEEEeCCCCCcCCCcCHHH
Confidence            98    9999999999998889999999999998744  58899999998876     7999999999999999999888


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.++++.+ +++++||+||+|.++.+++. ...++..+. .      ..++++++||||.| |++|+|+||++   ++++
T Consensus       167 l~~l~~~~-~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-~------~~~vi~~~S~SK~~-g~~GlRiG~~v---~~~~  233 (352)
T PRK03321        167 LARFLDAV-PADVLVVLDEAYVEYVRDDD-VPDGLELVR-D------HPNVVVLRTFSKAY-GLAGLRVGYAV---GHPE  233 (352)
T ss_pred             HHHHHHhC-CCCeEEEEechHHHhccCcC-CCcHHHHHh-h------CCCEEEEecchHHh-hhHHHhhhhhc---CCHH
Confidence            88888865 47999999999999987542 222222221 1      23599999999999 79999999998   7899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+.+... ..+.+.+                                  .|.++..++..       .+.+   .+.
T Consensus       234 ~~~~~~~~~~-~~~~s~~----------------------------------~q~~a~~~l~~-------~~~~---~~~  268 (352)
T PRK03321        234 VIAALRKVAV-PFSVNSL----------------------------------AQAAAIASLAA-------EDEL---LER  268 (352)
T ss_pred             HHHHHHHhcC-CCCCCHH----------------------------------HHHHHHHHhcC-------HHHH---HHH
Confidence            9999987643 3455565                                  44333323220       1222   222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      + +.+.++++.+.+.|++. ++.+.++ +|+|+|+++..              .+..+ .+.|+++||.++|   |+   
T Consensus       269 ~-~~~~~~r~~~~~~L~~~-~~~~~~~-~g~~i~i~l~~--------------~~~~~-~~~l~~~gI~v~~---~~---  324 (352)
T PRK03321        269 V-DAVVAERDRVRAALRAA-GWTVPPS-QANFVWLPLGE--------------RTADF-AAAAAEAGVVVRP---FA---  324 (352)
T ss_pred             H-HHHHHHHHHHHHHHHHC-CCccCCC-CCCEEEEeCCC--------------CHHHH-HHHHHHCCEEEEc---cC---
Confidence            2 33345567788888887 7765444 57889976631              23444 4456789999987   43   


Q ss_pred             CccccccchhhhhhhHHHHHHHhh
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKA  443 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~  443 (509)
                       .+++|+++..++++++++++...
T Consensus       325 -~~~iRi~~~~~~~~~~~~~al~~  347 (352)
T PRK03321        325 -GEGVRVTIGAPEENDAFLRAARA  347 (352)
T ss_pred             -CCcEEEeeCCHHHHHHHHHHHHH
Confidence             25799999999999999998754

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=1.1e-33  Score=286.96  Aligned_cols=267  Identities=20%  Similarity=0.257  Sum_probs=210.8

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      .+.+|+++.+ +++|+.+++++    |  +++++|++|+|+++++..++..+ .+|     .|+++.|+|..+...++..
T Consensus        40 ~~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~G~~~~i~~~~~~l-~~g-----~vl~~~p~y~~~~~~~~~~  106 (330)
T TIGR01140        40 AWARYPDPEY-DELRAAAAAYY----G--LPAASVLPVNGAQEAIYLLPRLL-APG-----RVLVLAPTYSEYARAWRAA  106 (330)
T ss_pred             HHhhCCCccH-HHHHHHHHHHh----C--CChhhEEECCCHHHHHHHHHHHh-CCC-----eEEEeCCCcHHHHHHHHHc
Confidence            4556988776 99999999998    3  56899999999999999987664 443     6999999999999999999


Q ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       125 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      |.+++.++         |++.+++.++      +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.
T Consensus       107 g~~~~~~~---------d~~~l~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~  171 (330)
T TIGR01140       107 GHEVVELP---------DLDRLPAALE------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFT  171 (330)
T ss_pred             CCEEEEeC---------CHHHHHhhcc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence            99999886         6888888873      47889999999999999999999999999999999999999999887


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccc
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQ  284 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  284 (509)
                      +.     .++.....      ...++|+++|+||.+ |++|+|+||++   .++++++.+...... ..++.+       
T Consensus       172 ~~-----~~~~~~~~------~~~~~i~~~S~SK~~-g~~G~R~G~i~---~~~~~~~~l~~~~~~-~~~s~~-------  228 (330)
T TIGR01140       172 PD-----ASLAPQAA------RFPGLVVLRSLTKFF-GLAGLRLGFVV---AHPALLARLREALGP-WTVNGP-------  228 (330)
T ss_pred             Cc-----cchhhHhc------cCCCEEEEEecchhh-cCchhhhhhee---CCHHHHHHHHhcCCC-CCchHH-------
Confidence            53     12222211      123589999999999 89999999998   788999998876543 344555       


Q ss_pred             ccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec
Q psy13922        285 LFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN  364 (509)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  364 (509)
                                                 +|.++..+++.        ..   +.+..++.++++++.+.+.|++++.+++.
T Consensus       229 ---------------------------~q~~~~~~l~~--------~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  270 (330)
T TIGR01140       229 ---------------------------ARAAGRAALAD--------TA---WQAATRARLAAERARLAALLARLGGLEVV  270 (330)
T ss_pred             ---------------------------HHHHHHHHHhc--------hH---HHHHHHHHHHHHHHHHHHHHHhCCCceEC
Confidence                                       55555555441        12   24567889999999999999998556665


Q ss_pred             cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       365 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      + .+++|+|+++.               +..++...++ ++||.++||..|..
T Consensus       271 ~-~~~~f~~~~~~---------------~~~~l~~~l~-~~gi~v~pg~~f~~  306 (330)
T TIGR01140       271 G-GTALFLLVRTP---------------DAAALHEALA-RRGILIRDFDNFPG  306 (330)
T ss_pred             C-CCCeEEEEEcC---------------CHHHHHHHHH-HCCEEEEECCCCCC
Confidence            4 46789997665               2345454554 57999999999854

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=286.07  Aligned_cols=249  Identities=16%  Similarity=0.216  Sum_probs=191.7

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEE
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ  128 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~  128 (509)
                      |+...  .+||++++++++        +++|++|+|++++|.+++.  ..+||    +|++++|+|..|...++..|+++
T Consensus        47 yp~~~--~~Lr~~ia~~~~--------~~~I~it~Gs~~al~~~~~--~~~gd----~v~v~~P~y~~~~~~~~~~g~~~  110 (330)
T PRK05664         47 LPETD--DGLEAAARAYYG--------APQLLPVAGSQAAIQALPR--LRAPG----RVGVLSPCYAEHAHAWRRAGHQV  110 (330)
T ss_pred             CCCCh--HHHHHHHHHHhC--------CCCEEECcCHHHHHHHHHH--ccCCC----EEEEcCCChHHHHHHHHHcCCeE
Confidence            86543  889999999982        4799999999999998863  46787    99999999999999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC
Q psy13922        129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG  208 (509)
Q Consensus       129 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~  208 (509)
                      +.++.+          .+++.+.      +++++++++||||||.+++.+++++|+++|++++++||+||+|.++..   
T Consensus       111 ~~v~~~----------~~~~~~~------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~---  171 (330)
T PRK05664        111 RELDEA----------EVEAALD------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP---  171 (330)
T ss_pred             EEechh----------hHhhhhc------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC---
Confidence            998753          3444443      578899999999999999999999999999999999999999987642   


Q ss_pred             CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCC
Q psy13922        209 SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD  288 (509)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  288 (509)
                        ..++.++..       ..++|+++||||.| |+||+|+||++   +++++++.+.+.... +..+.+           
T Consensus       172 --~~s~~~~~~-------~~~vi~~~SfSK~~-gl~GlRiG~~v---~~~~l~~~~~~~~~~-~~~~~~-----------  226 (330)
T PRK05664        172 --QHSLAACAH-------RPGLIVLRSFGKFF-GLAGARLGFVL---AEPALLRALAELLGP-WTVSGP-----------  226 (330)
T ss_pred             --ccccccccc-------CCCEEEEeeccccc-cCCCcceEEEE---eCHHHHHHHHHhcCC-CCCCHH-----------
Confidence              123333321       23599999999999 79999999998   789999999876543 234555           


Q ss_pred             CCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc
Q psy13922        289 PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG  368 (509)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~  368 (509)
                                             .|.++..+++.        .   .+.++.++.++++++.+.+.|++. ++.   +.+
T Consensus       227 -----------------------~~~~~~~~L~~--------~---~~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~  268 (330)
T PRK05664        227 -----------------------TRWLAQAALAD--------T---PWQRRQRERLLAASQRLAALLRRH-GLT---PAG  268 (330)
T ss_pred             -----------------------HHHHHHHHHhC--------h---HHHHHHHHHHHHHHHHHHHHHHHC-CCc---ccC
Confidence                                   44444444431        1   224667889999999999999987 654   334


Q ss_pred             e--eEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        369 A--MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       369 g--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      +  +|+|+++.               ++.. +.+.|.++||.+++
T Consensus       269 ~~~~f~~~~~~---------------~~~~-~~~~l~~~gi~v~~  297 (330)
T PRK05664        269 GCALFQWVRTE---------------DAAA-LHEFLARRGILTRL  297 (330)
T ss_pred             CcceEEEEecC---------------CHHH-HHHHHHHCCeEEEE
Confidence            4  77786543               2334 35667788999974

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=8.4e-34  Score=285.41  Aligned_cols=291  Identities=16%  Similarity=0.238  Sum_probs=215.1

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCC
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG  102 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~  102 (509)
                      +|..|+.+.+++.+++..     .+.|+.   ...+|++++++++         ++|++|+|+++++..++..+ .+|| 
T Consensus        18 np~~p~~~~~a~~~~~~~-----~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al~~~~~~~-~~gd-   78 (311)
T PRK08354         18 NPYPPEWLDEMFERAKEI-----SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEALYLIGILA-LRDR-   78 (311)
T ss_pred             CCCCCHHHHHHHHHHHHH-----hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHHHHHHHhh-CCCC-
Confidence            334477888888777554     234864   3669999998873         47999999999999888554 4787 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                         .|+++.|+|..|...++..|.+++.+        .+|++.+++.++      +++++++++||||||.+++.+++++
T Consensus        79 ---~vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~------~~~~vi~~~P~NPTG~~~~~~~l~~  141 (311)
T PRK08354         79 ---KVIIPRHTYGEYERVARFFAARIIKG--------PNDPEKLEELVE------RNSVVFFCNPNNPDGKFYNFKELKP  141 (311)
T ss_pred             ---eEEEeCCCcHHHHHHHHHcCCEEeec--------CCCHHHHHHhhc------CCCEEEEecCCCCCCCccCHHHHHH
Confidence               99999999999999999999999765        357888887765      3678889999999999999999999


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |+++|+++|+++|+||+|.+|.+++.  ..+             ..++++++||||.| |+||+|+||++   +   +.+
T Consensus       142 l~~~a~~~~~~li~De~y~~f~~~~~--~~~-------------~~~vi~~~S~SK~~-~l~GlRiG~~v---~---~~~  199 (311)
T PRK08354        142 LLDAVEDRNALLILDEAFIDFVKKPE--SPE-------------GENIIKLRTFTKSY-GLPGIRVGYVK---G---FEE  199 (311)
T ss_pred             HHHHhhhcCcEEEEeCcchhcccccc--ccC-------------CCcEEEEeccHhhc-CCccceeeeee---e---hHH
Confidence            99999999999999999999987531  111             23599999999999 79999999997   4   556


Q ss_pred             HHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHH
Q psy13922        263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLD  342 (509)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (509)
                      .++.... .+..+..                                  +++++..++.         + ..++++..++
T Consensus       200 ~l~~~~~-~~~~~~~----------------------------------~~~~~~~~~~---------~-~~~~~~~~~~  234 (311)
T PRK08354        200 AFRSVRM-PWSIGST----------------------------------GYAFLEFLIE---------D-DFEHLRKTMP  234 (311)
T ss_pred             HHHHcCC-CccCCHH----------------------------------HHHHHHHHHH---------h-HHHHHHHHHH
Confidence            6665443 2233334                                  3444444332         1 1122444445


Q ss_pred             HHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcc
Q psy13922        343 SLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTY  422 (509)
Q Consensus       343 ~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~  422 (509)
                      .+++.++.+.+.+       ..+++++|+++ ++.               ++.+++ +.+.++||.++||..|+.   .+
T Consensus       235 ~~~~~~~~l~~~l-------~~~~~~~~~~~-~~~---------------~~~~~~-~~l~~~gv~v~~g~~f~~---~~  287 (311)
T PRK08354        235 LIWREKERFEKAL-------YVKSDANFFIK-DVG---------------DAEKFV-EFLKRNGILVRDCTSFGL---PG  287 (311)
T ss_pred             HHHHHHHHHHHhc-------CCCCCCcEEEE-ECC---------------CHHHHH-HHHHHCCeEEEecccCCC---CC
Confidence            5555555544433       23567777764 442               234444 455778999999999964   47


Q ss_pred             ccccchhhhhhhHHHHHHHhh
Q psy13922        423 HFRQQVWWRHYTQRAIAKAKA  443 (509)
Q Consensus       423 ~~r~~~~~~~~~~~~~~~~~~  443 (509)
                      +||+++..+.++++++++...
T Consensus       288 ~iRi~~~~~~~~~~l~~al~~  308 (311)
T PRK08354        288 YIRFSVRDREENEKLIRALRE  308 (311)
T ss_pred             eEEEEeCCHHHHHHHHHHHHH
Confidence            999999999999999998754

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.7e-33  Score=286.21  Aligned_cols=254  Identities=18%  Similarity=0.256  Sum_probs=196.4

Q ss_pred             ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCC
Q psy13922         47 GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNM  126 (509)
Q Consensus        47 ~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~  126 (509)
                      .+|+...  .+||+++++++    |+. ++++|++|+|++++|..+.. ++++|     .|+++.|+|..|...++..|+
T Consensus        49 ~~Yp~~~--~~L~~~ia~~~----~~~-~~~~I~i~~Gs~e~i~~l~~-~~~~g-----~v~v~~P~y~~y~~~~~~~g~  115 (339)
T PRK06959         49 RRLPEDD--DGLAACAARYY----GAP-DAAHVLPVAGSQAAIRALPA-LLPRG-----RVGIAPLAYSEYAPAFARHGH  115 (339)
T ss_pred             HhCCCch--HHHHHHHHHHh----CCC-CcccEEECcCHHHHHHHHHH-hcCCC-----eEEEcCCCcHHHHHHHHHCCC
Confidence            3488654  88999999998    322 45899999999999997765 45554     588899999999999999999


Q ss_pred             EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccccc
Q psy13922        127 EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA  206 (509)
Q Consensus       127 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~  206 (509)
                      +++.++.++        +    .+..     .+++++++|||||||.+++.+++++|++.|+++++++|+||+|.+|...
T Consensus       116 ~~~~v~~~~--------~----~~~~-----~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~  178 (339)
T PRK06959        116 RVVPLDEAA--------D----TLPA-----ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA  178 (339)
T ss_pred             EEEeecccc--------h----hccc-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc
Confidence            999987642        1    1222     4678999999999999999999999999999999999999999998642


Q ss_pred             CCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccccc
Q psy13922        207 EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLF  286 (509)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  286 (509)
                           .++..+. +      ..++|+++||||.| |++|+|+||++   +++++++.+.+.... ++.+.+         
T Consensus       179 -----~s~~~~~-~------~~~vi~l~SfSK~~-gl~GlRiGy~v---~~~~li~~l~~~~~~-~~vs~~---------  232 (339)
T PRK06959        179 -----ASLAAHT-D------RPGLVVLRSVGKFF-GLAGVRAGFVL---AAPALLAALRDALGA-WTVSGP---------  232 (339)
T ss_pred             -----ccchhcc-C------CCCEEEEecChhhc-CCcchheEEEe---cCHHHHHHHHHhcCC-CCCcHH---------
Confidence                 2333221 1      23489999999999 89999999998   899999999887653 345666         


Q ss_pred             CCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC
Q psy13922        287 DDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV  366 (509)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  366 (509)
                                               +|.++..+++.        ..   +.++.++.++++++.+.+.|+++ |+.+.  
T Consensus       233 -------------------------~q~a~~~~L~~--------~~---~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--  273 (339)
T PRK06959        233 -------------------------ARHAVRAAFAD--------AA---WQAAMRERLAADGARLAALLRAH-GFAVH--  273 (339)
T ss_pred             -------------------------HHHHHHHHhCc--------HH---HHHHHHHHHHHHHHHHHHHHHHC-CCCcc--
Confidence                                     56665555541        12   25677899999999999999998 77665  


Q ss_pred             CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       367 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      .+++|+|+++.               +... +...|.++||.++.
T Consensus       274 ~~~~f~~~~~~---------------~~~~-l~~~l~~~GI~vr~  302 (339)
T PRK06959        274 ATPLFSWTDDP---------------RAAA-LHAALARRGIWTRY  302 (339)
T ss_pred             CcceEEEEeCC---------------CHHH-HHHHHHhCCeEEEE
Confidence            35789997653               1233 35566678999984

>cd00609 AAT_like Aspartate aminotransferase family

Probab=100.00  E-value=4.8e-30  Score=261.16  Aligned_cols=320  Identities=24%  Similarity=0.432  Sum_probs=249.1

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      ....|++..|..++++.+++++...++.....+++++++|+++++..++.++.++|+    +|+++.|+|.++...++..
T Consensus        28 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~----~vl~~~~~~~~~~~~~~~~  103 (350)
T cd00609          28 GLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGD----EVLVPDPTYPGYEAAARLA  103 (350)
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHC
Confidence            344488899999999999999998877656678999999999999999999998888    9999999999999999999


Q ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       125 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      |.+++.++.++.+.+..+.+.++.....     ++++|++++|+||||..++.+++.+|+++|+++|+++|+|++|+.+.
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~  178 (350)
T cd00609         104 GAEVVPVPLDEEGGFLLDLELLEAAKTP-----KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELV  178 (350)
T ss_pred             CCEEEEEecccccCCccCHHHHHhhcCc-----cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhce
Confidence            9999999988665443333555554443     79999999999999999999999999999999999999999999988


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HHHHHHHHhhh-cccCcchhhhhcc
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GVKAMLHKSIS-AMLCPTVLALVSL  282 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~~~~l~~~~~-~~~~~~~~~~~~~  282 (509)
                      +.+...  .... ..     .....+++++|+||.+ |.+|+|+|+++   .++ ++.+.+..... ....++..     
T Consensus       179 ~~~~~~--~~~~-~~-----~~~~~~~~~~s~~K~~-~~~g~~~G~i~---~~~~~~~~~~~~~~~~~~~~~~~~-----  241 (350)
T cd00609         179 YDGEPP--PALA-LL-----DAYERVIVLRSFSKTF-GLPGLRIGYLI---APPEELLERLKKLLPYTTSGPSTL-----  241 (350)
T ss_pred             eCCccc--cccc-Cc-----CccCcEEEEeeccccc-CCcccceEEEe---cCHHHHHHHHHHHHHhcccCCChH-----
Confidence            754211  1000 00     0123478889999999 68999999998   566 89998877655 23455555     


Q ss_pred             ccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy13922        283 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS  362 (509)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  362 (509)
                                                   .+.++..++..        ..  ++.+++++.+.++++.+.+.|++++...
T Consensus       242 -----------------------------~~~~~~~~l~~--------~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~  282 (350)
T cd00609         242 -----------------------------SQAAAAAALDD--------GE--EHLEELRERYRRRRDALLEALKELGPLV  282 (350)
T ss_pred             -----------------------------HHHHHHHHHhC--------cH--HHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence                                         45555555441        11  4578889999999999999999985444


Q ss_pred             eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHh
Q psy13922        363 CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAK  442 (509)
Q Consensus       363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~  442 (509)
                      +..+.+++++|+++.-+             .....+.++++++||.+.++..|..                         
T Consensus       283 ~~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~i~~~~~~~~-------------------------  324 (350)
T cd00609         283 VVKPSGGFFLWLDLPEG-------------DDEEFLERLLLEAGVVVRPGSAFGE-------------------------  324 (350)
T ss_pred             ccCCCccEEEEEecCCC-------------ChHHHHHHHHHhCCEEEeccccccc-------------------------
Confidence            35677899999776521             1333467888899999999887763                         


Q ss_pred             hcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        443 AEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                             .+..        ++|++++...++|+.++++|+
T Consensus       325 -----------------------~~~~--------~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         325 -----------------------GGEG--------FVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             -----------------------CCCC--------eEEEEeeCCHHHHHHHHHHhh
Confidence                                   1222        899999966999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.98  E-value=1.1e-29  Score=266.76  Aligned_cols=351  Identities=16%  Similarity=0.147  Sum_probs=242.8

Q ss_pred             HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEE
Q psy13922         29 DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL  108 (509)
Q Consensus        29 ~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vl  108 (509)
                      .+.+++.+++..   +. .+|++..|.++||++++++++        .++|++|+|+++|+..++.+++++||     |+
T Consensus        58 a~~~a~~~a~~~---g~-~~Y~~~~g~~~Lreaia~~~~--------~~~vv~t~ggt~A~~~~~~all~pGD-----Vi  120 (460)
T PRK13238         58 AMSDRQWAAMMR---GD-EAYAGSRSYYRLEDAVKDIFG--------YPYTIPTHQGRAAEQILFPVLIKKGD-----VV  120 (460)
T ss_pred             hhhHHHHHHHHh---CC-cccCCCCCHHHHHHHHHHHhC--------CCcEEECCCHHHHHHHHHHHhCCCCC-----EE
Confidence            477887777765   33 359999999999999999994        35799999999999999999998874     88


Q ss_pred             EcCCCChhHHHHHHhcCCEEEEEecCCC------CCCC--CCHHHHHHHHHhhhccCCceEEEEeCCCCCCC-CCCCHHH
Q psy13922        109 IPIPQYPLYSASLAEFNMEQIGYYLDES------KQWG--LPISELERSITEARKHCNPRAIVIINPGNPTG-QVLTKEN  179 (509)
Q Consensus       109 v~~p~y~~~~~~~~~~g~~~~~v~~~~~------~~~~--~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG-~~~s~~~  179 (509)
                      +++|.|..|...++.+|++++.+++++.      ++|.  +|++.|++.+++... .++++|++++|+|||| .+++.++
T Consensus       121 i~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~-~~tk~Ivl~~p~NptGG~v~s~~~  199 (460)
T PRK13238        121 PSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA-ENVPFIVMTITNNSAGGQPVSMAN  199 (460)
T ss_pred             ccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC-CceeEEEEecCCCCCCCcCCCHHH
Confidence            9999999999999999999999998642      3454  999999999985211 2699999999999997 9999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCC--cccccC----CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQ--DNVYAE----GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +++|.++|++||++||+|+++.  ...+..    +....++.++...+..   ..+++++ |..|...  .+. .|+++ 
T Consensus       200 l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s---~~D~~~~-Sg~K~g~--~~~-GG~i~-  271 (460)
T PRK13238        200 LRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFS---YADGLTM-SAKKDAM--VNI-GGLLC-  271 (460)
T ss_pred             HHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcc---cCcEEEE-ecccCCC--Ccc-eeEEE-
Confidence            9999999999999999999663  232321    1234555554322211   1123333 4455431  221 35554 


Q ss_pred             ecCCHHHHHHHHHhhh------cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        254 INLDPGVKAMLHKSIS------AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                       +.++++.+.++....      ++.+.+..                                  .|.|+...+..     
T Consensus       272 -~~d~~l~~~~~~~~~~~~g~~t~~g~~~~----------------------------------~~~Ala~~l~e-----  311 (460)
T PRK13238        272 -FRDEDLFTECRTLCILYEGFPTYGGLAGR----------------------------------DMEALAVGLYE-----  311 (460)
T ss_pred             -cChHHHHHHhhhcccccCCcccccCcHHH----------------------------------HHHHHHhhHHH-----
Confidence             244788888876531      11122222                                  24444433220     


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCC-CCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        328 PSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK-LPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                           ..  -+.......+++++|.+.|++. |+.+..|.||+|+++++. +..+    ....+. ++..++.+++++.|
T Consensus       312 -----~~--~~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~----~~~~~~-~~~~~a~~L~~e~G  378 (460)
T PRK13238        312 -----GM--DEDYLAYRIGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPH----IPAEQF-PAQALACELYLEAG  378 (460)
T ss_pred             -----hh--ChHHHHHHHHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCC----CCCCCC-chHHHHHHHHHHcC
Confidence                 00  0111222233578899999988 999999999999999885 1100    000111 35778999999999


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeec-
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILP-  485 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~-  485 (509)
                      |.+.|+..|.....                                             +..+....+...++||++.. 
T Consensus       379 V~~~~~~~f~~~~~---------------------------------------------~~~~~~~~~~~~~~Rla~~rr  413 (460)
T PRK13238        379 IRGVEIGSLLLGRD---------------------------------------------PKTGEQLPAPAELLRLAIPRR  413 (460)
T ss_pred             eeeecccceecccC---------------------------------------------CCCccccCCccceEEEecccc
Confidence            99999998876311                                             11111112223499999996 


Q ss_pred             --ChHHHHHHHHHHHHHHHH
Q psy13922        486 --QPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       486 --~~~~i~~~~~~l~~~~~~  503 (509)
                        +.+.++.+.++|+++.++
T Consensus       414 ~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        414 VYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             cCCHHHHHHHHHHHHHHHHh
Confidence              999999999999998743

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=6.7e-29  Score=242.20  Aligned_cols=332  Identities=17%  Similarity=0.216  Sum_probs=260.5

Q ss_pred             HHHHHHHHhhcCCCCC-----------CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-
Q psy13922          6 SLSLQVLALVSLPQLF-----------DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-   73 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~-----------~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-   73 (509)
                      -.+-+.++...+|..+           |.++.-+.|.++-+..+..   .....|-|..|.+++++++++++.   |.+ 
T Consensus        14 lgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~---~~~k~Yl~i~G~~~f~~~~~~llF---G~d~   87 (396)
T COG1448          14 LGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQ---EKTKNYLPIEGLPEFLEAVQKLLF---GADS   87 (396)
T ss_pred             hHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcc---ccccccCCcCCcHHHHHHHHHHhc---CCCc
Confidence            3455566666677765           3444445677766666666   345559999999999999999995   433 


Q ss_pred             --CCCCcE--EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHH
Q psy13922         74 --ADWQDV--ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERS  149 (509)
Q Consensus        74 --~~~~~i--~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~  149 (509)
                        +..++|  +-|.|+|.|+......+.....  +.+|++++|+|.++...++.+|.++..+|..+..+-.+|.+.+...
T Consensus        88 ~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~--~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~  165 (396)
T COG1448          88 PALAEDRVATVQTLGGTGALRVAADFLARFFP--DATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLAD  165 (396)
T ss_pred             HHHHhhhHhheecCCcchHHHHHHHHHHHhCC--CceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHH
Confidence              444444  5689999999999998866543  3379999999999999999999999999986655557999999999


Q ss_pred             HHhhhccCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCc
Q psy13922        150 ITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM  228 (509)
Q Consensus       150 i~~~~~~~~~~~ivi~-~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (509)
                      +++.+   ...+|++. .+|||||..++.++|++|+++.++.+.+.+.|-+|.+|..+-++.-..+.-+...      ..
T Consensus       166 L~~a~---~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~------~~  236 (396)
T COG1448         166 LKTAP---EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEV------GP  236 (396)
T ss_pred             HHhCC---CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHh------CC
Confidence            88752   34566674 6799999999999999999999999999999999999987644333344444333      22


Q ss_pred             eeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH----H-hhhcccCcchhhhhccccccCCCCCchhHHHHHHHhh
Q psy13922        229 ELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH----K-SISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL  303 (509)
Q Consensus       229 ~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (509)
                      .+++..|+||.| |+.|.|+|.+.+++.+.+..+++.    . .++.+++|+..|..+++.+|+|+++            
T Consensus       237 ~~lva~S~SKnf-gLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~L------------  303 (396)
T COG1448         237 ELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPEL------------  303 (396)
T ss_pred             cEEEEehhhhhh-hhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHH------------
Confidence            388889999999 899999999998888887776553    2 2447889999988888887877664            


Q ss_pred             hcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CCeeccCCceeEEeecCCCCH
Q psy13922        304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI-E--GMSCNPVQGAMYAFPQMKLPA  380 (509)
Q Consensus       304 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~~g~~~~~~~~~~~  380 (509)
                                                ...|..++..++.++.++|..+.+.|+.. +  .+.++..+.|||.+..++   
T Consensus       304 --------------------------ra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls---  354 (396)
T COG1448         304 --------------------------RAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLS---  354 (396)
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCC---
Confidence                                      46788889999999999999999999983 2  478889999999984332   


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        381 KAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       381 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                                    .+.+.++.+++||+++
T Consensus       355 --------------~~QV~rLree~~IY~v  370 (396)
T COG1448         355 --------------PEQVDRLREEFGIYLV  370 (396)
T ss_pred             --------------HHHHHHHHHhccEEEe
Confidence                          2337899999999998

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.96  E-value=2.3e-26  Score=233.86  Aligned_cols=276  Identities=15%  Similarity=0.168  Sum_probs=194.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|.++++..+++++        |+   |..++.+.+.+.+.+.+|  ++++++++++|+++++..++.++.++||    .
T Consensus        35 ~~~~~~~~~~~~~~--------~~---g~~~~~~~Le~~lA~~~g--~~~e~ilv~~gg~~a~~~~~~al~~~gd----~   97 (346)
T TIGR03576        35 GFKIDEEDLELLET--------YV---GPAIFEEKVQELGREHLG--GPEEKILVFNRTSSAILATILALEPPGR----K   97 (346)
T ss_pred             ChhHHHHHHHHHHH--------hc---CCHHHHHHHHHHHHHHcC--CCcceEEEECCHHHHHHHHHHHhCCCCC----E
Confidence            46788888888888        32   333444444444444445  5678999999999999999999999998    9


Q ss_pred             EEEc---CCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        107 VLIP---IPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       107 Vlv~---~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                      |+++   .|+|..+...++..|++++.+         .|++.++.  .+     ++++|+++ ++||+|.+++.+++++|
T Consensus        98 Vli~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~-----~~~lIiit-g~s~~G~v~~~~~L~~i  160 (346)
T TIGR03576        98 VVHYLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--ID-----GTSLVVIT-GSTMDLKVVSEEDLKRV  160 (346)
T ss_pred             EEECCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--Cc-----CceEEEEE-CCCCCCcccCHHHHHHH
Confidence            9875   479999999999999986432         14454322  12     57887775 47999999999999999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      +++|+++|+++|+||+|..+..... ...+....    +     .+ ++++||||.   ++|+|+||++   +++++++.
T Consensus       161 ~~la~~~~~~livDEAy~~~~~~~~-~~~~~~~~----~-----~d-ivv~s~SKa---laG~r~G~v~---~~~~li~~  223 (346)
T TIGR03576       161 IKQAKSKEAIVLVDDASGARVRRLY-GQPPALDL----G-----AD-LVVTSTDKL---MDGPRGGLLA---GRKELVDK  223 (346)
T ss_pred             HHHHHHcCCEEEEECCccccccccC-CCCCHHHc----C-----Cc-EEEeccchh---ccccceEEEE---eCHHHHHH
Confidence            9999999999999999998754211 11122111    1     12 446699994   5899999998   89999999


Q ss_pred             HHHhhhccc-CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHH
Q psy13922        264 LHKSISAML-CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLD  342 (509)
Q Consensus       264 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (509)
                      +.+....+. +.+.+                                  .+++...+++          ...  .+.+++
T Consensus       224 l~~~~~~~~~s~~~~----------------------------------~~~aa~~aL~----------~~~--~~~~~~  257 (346)
T TIGR03576       224 IKSVGEQFGLEAQAP----------------------------------LLAAVVRALE----------EFE--LSRIRD  257 (346)
T ss_pred             HHHhhcCcccCccHH----------------------------------HHHHHHHHHh----------hcc--HHHHHH
Confidence            988766332 24444                                  2333333322          010  345677


Q ss_pred             HHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        343 SLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       343 ~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      .++++++.+.+.+++   +.+.++.++ |+|++++.             .++.+++..+|+++||.++||..|.
T Consensus       258 ~l~~r~~~~~~~l~~---~~~~~~~~~-f~~~~~~~-------------~~~~~~~~~ll~~~gV~v~~~~~f~  314 (346)
T TIGR03576       258 AFKRKEEVYLRLFDK---LNVERTPTG-FVIKGVEE-------------EKLIEIGLDLLRNYGIITITAVGMP  314 (346)
T ss_pred             HHHHHHHHHHHHHHh---CCCCcCCCe-EEEEeCCC-------------CCHHHHHHHHHHhCCEEEeCCcccC
Confidence            888888888888774   445555556 68877651             1234568899999999999988774

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.96  E-value=2.3e-26  Score=239.67  Aligned_cols=373  Identities=14%  Similarity=0.138  Sum_probs=242.2

Q ss_pred             HHHHHHHHhhcC-CCCC---CCCCCCHHHHHHHHHHHhcccCCCc-ccCC----CCcchHHHHHHHHHHHhhhcCCCCCC
Q psy13922          6 SLSLQVLALVSL-PQLF---DDPRFPDDVKQRAQAVLDGCRGQSV-GSYT----DSPGIEIIRRHVAQYISRRDGQPADW   76 (509)
Q Consensus         6 ~~~~~~~~~~~~-~~~~---~~~~~p~~v~~a~~~~l~~~~~~~~-~~Y~----~~~g~~~lr~~va~~l~~~~g~~~~~   76 (509)
                      ..+|..+..... .-++   +....|..+++++.+.+........ ..+.    ......++|+.+++++    |.. ++
T Consensus         7 ~~~r~~fp~l~~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~   81 (401)
T PRK10874          7 AQFRAQFPALQDAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----NAP-DA   81 (401)
T ss_pred             HHHHHhCCCcCCceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CCC-CC
Confidence            456666664332 2234   3344678999999998876321111 0011    1223567888888887    321 67


Q ss_pred             CcEEEeCCHHHHHHHHHHHhh----cCCCCCCCeEEEcCCCChh----HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHH
Q psy13922         77 QDVILSAGASDGIKSVLKLLI----EDVDGKKPGVLIPIPQYPL----YSASLAEFNMEQIGYYLDESKQWGLPISELER  148 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~  148 (509)
                      ++|++|+|++++++.+++++.    ++||    +|+++.|.|.+    +...++..|++++.++.+.  ++.+|++.+++
T Consensus        82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~  155 (401)
T PRK10874         82 KNIVWTRGTTESINLVAQSYARPRLQPGD----EIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPE  155 (401)
T ss_pred             CEEEEECCHHHHHHHHHHHhhhccCCCcC----EEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHH
Confidence            899999999999999999984    5677    99999999865    4566678899999999865  35789999999


Q ss_pred             HHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCc
Q psy13922        149 SITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM  228 (509)
Q Consensus       149 ~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (509)
                      .+++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......     ..+..+    +     .
T Consensus       156 ~i~~-----~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~-----~~~~~~----~-----~  213 (401)
T PRK10874        156 LITP-----RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP-----ADVQAL----D-----I  213 (401)
T ss_pred             hcCc-----CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc-----CCchhc----C-----C
Confidence            9976     7999999999999999987   789999999999999999999653221     122111    1     1


Q ss_pred             eeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccC
Q psy13922        229 ELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG  308 (509)
Q Consensus       229 ~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (509)
                       .+++.|++|.+ |++|  +|+++   .++++++.+.............       -..+..+.     .....++.|+.
T Consensus       214 -d~~~~s~~K~~-gp~G--~G~l~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~~e~Gt~  274 (401)
T PRK10874        214 -DFYAFSGHKLY-GPTG--IGVLY---GKSELLEAMSPWQGGGKMLTEV-------SFDGFTPQ-----SAPWRFEAGTP  274 (401)
T ss_pred             -CEEEEeccccc-CCCc--cEEEE---EchHHHhcCCCeecCCcceEee-------ccCccCCC-----CChhhccCCCc
Confidence             24456899988 7777  48887   5788877664322100000000       00000000     00112233344


Q ss_pred             cccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhh
Q psy13922        309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       309 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                      +.....++..+++        +-.. ....+.+++.+++++++.+.|+++||+.+..+..+.++++.+.           
T Consensus       275 ~~~~~~al~~al~--------~l~~-~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~-----------  334 (401)
T PRK10874        275 NVAGVIGLSAALE--------WLAD-IDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFA-----------  334 (401)
T ss_pred             CHHHHHHHHHHHH--------HHHH-hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEEC-----------
Confidence            4334555554433        1111 1144567888888999999999988988775444445554453           


Q ss_pred             cCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCC
Q psy13922        389 EGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGA  468 (509)
Q Consensus       389 ~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (509)
                       ++. .++ +...|.++||.+++|..|..                               ++      ++..     ...
T Consensus       335 -~~~-~~~-~~~~L~~~gI~v~~g~~~~~-------------------------------~~------~~~~-----g~~  369 (401)
T PRK10874        335 -GVH-HSD-LVTLLAEYGIALRAGQHCAQ-------------------------------PL------LAAL-----GVT  369 (401)
T ss_pred             -CcC-HHH-HHHHHHHCCcEEeccccchH-------------------------------HH------HHHh-----CCC
Confidence             222 233 44667788999999886653                               00      0110     011


Q ss_pred             CCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHH
Q psy13922        469 GFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       469 ~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~  503 (509)
                      +        ++|+|+.  +++++++.+++.|+++++.
T Consensus       370 ~--------~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        370 G--------TLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             C--------EEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            2        8999999  8999999999999988764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.96  E-value=2.7e-26  Score=238.92  Aligned_cols=372  Identities=14%  Similarity=0.114  Sum_probs=241.5

Q ss_pred             HHHHHHHhhcCC-CCCC---CCCCCHHHHHHHHHHHhcccCCCc-ccCC----CCcchHHHHHHHHHHHhhhcCCCCCCC
Q psy13922          7 LSLQVLALVSLP-QLFD---DPRFPDDVKQRAQAVLDGCRGQSV-GSYT----DSPGIEIIRRHVAQYISRRDGQPADWQ   77 (509)
Q Consensus         7 ~~~~~~~~~~~~-~~~~---~~~~p~~v~~a~~~~l~~~~~~~~-~~Y~----~~~g~~~lr~~va~~l~~~~g~~~~~~   77 (509)
                      .+|..+.....+ -+++   ....|..+++++.+.+........ ..|.    ....+.++|+.++++++    .. +++
T Consensus         5 ~~r~~fp~l~~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g----~~-~~~   79 (398)
T TIGR03392         5 QFRQQFPALQDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLN----AP-DAE   79 (398)
T ss_pred             HHHHhCCccCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhC----CC-CCC
Confidence            456555543321 2343   334688999999888865321111 1111    11235678889998884    21 468


Q ss_pred             cEEEeCCHHHHHHHHHHHhh----cCCCCCCCeEEEcCCCChh----HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHH
Q psy13922         78 DVILSAGASDGIKSVLKLLI----EDVDGKKPGVLIPIPQYPL----YSASLAEFNMEQIGYYLDESKQWGLPISELERS  149 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~  149 (509)
                      +|++|+|++++++.++.++.    ++||    .|+++.|.|.+    +...++..|++++.++.+++  +.+|++.+++.
T Consensus        80 ~i~~t~g~t~~l~~~~~~~~~~~~~~gd----~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~  153 (398)
T TIGR03392        80 NIVWTRGTTESINLVAQSYARPRLQPGD----EIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD--LLPDIRQLPEL  153 (398)
T ss_pred             eEEEeCChHHHHHHHHHHhhhccCCCCC----EEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC--CCcCHHHHHHH
Confidence            99999999999999999983    5677    99999999876    45566788999999998754  46899999999


Q ss_pred             HHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCce
Q psy13922        150 ITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME  229 (509)
Q Consensus       150 i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (509)
                      +.+     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+.....     ..+...    +     . 
T Consensus       154 i~~-----~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~-----~~~~~~----~-----~-  210 (398)
T TIGR03392       154 LTP-----RTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP-----PDVQAL----D-----I-  210 (398)
T ss_pred             hcc-----CceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-----CChhhc----C-----C-
Confidence            977     7999999999999999988   788999999999999999999753321     122211    1     1 


Q ss_pred             eEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        230 LASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       230 vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      .+++.|.+|.+ |++|  +||++   .++++++.+..... .......      .-..+..+     +.....++.|+..
T Consensus       211 d~~~~s~~K~~-gp~G--~G~l~---~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~-----~~~~~~~e~GT~~  272 (398)
T TIGR03392       211 DFYAFSGHKLY-GPTG--IGVLY---GKTELLEAMPPWQG-GGKMLSH------VSFDGFIP-----QAVPHRFEAGTPN  272 (398)
T ss_pred             CEEEEeccccc-CCCc--eEEEE---EcHHHHhhCCCeec-CCceEee------cccccccc-----CCChhhccCCCCC
Confidence            23355888988 7666  79987   57887776643211 0000000      00000000     0011223444444


Q ss_pred             ccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhc
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAE  389 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  389 (509)
                      ..+..++..+++        +-.. ...+.+.++..++++++.+.|.++|++++..+..+.++++.++            
T Consensus       273 ~~~~~a~~~al~--------~l~~-~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~------------  331 (398)
T TIGR03392       273 IAGVIGLSAALE--------WLTD-IDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFA------------  331 (398)
T ss_pred             HHHHHHHHHHHH--------HHHH-hCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeC------------
Confidence            445555555443        1111 1145677888888999999999988888765444445554443            


Q ss_pred             CCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCC
Q psy13922        390 GKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAG  469 (509)
Q Consensus       390 g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (509)
                      ++. .++ +...|.++||.+++|..|..                               .++      +..     ...+
T Consensus       332 ~~~-~~~-l~~~L~~~gI~v~~g~~~~~-------------------------------~~~------~~~-----g~~~  367 (398)
T TIGR03392       332 GVH-HSD-LAALLAESGIALRAGQHCAQ-------------------------------PLM------AAL-----GVSG  367 (398)
T ss_pred             CcC-HHH-HHHHHHhCCEEEecCccchH-------------------------------HHH------HHh-----CCCC
Confidence            222 333 34556788999999886653                               011      010     1112


Q ss_pred             CCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHH
Q psy13922        470 FGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       470 ~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~  503 (509)
                              ++|+|+.  ++++|++..++.|++++++
T Consensus       368 --------~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       368 --------TLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             --------EEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence                    8999998  8999999999999998765

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.95  E-value=4.7e-26  Score=236.17  Aligned_cols=348  Identities=15%  Similarity=0.208  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEE
Q psy13922         29 DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL  108 (509)
Q Consensus        29 ~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vl  108 (509)
                      .+.++..+++..   +... |+++.|.++|+++++++++        .+++++|+|+++|+.+++.+++++||    .| 
T Consensus        33 ams~~~~~a~~~---gd~~-Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~Gt~Al~la~~al~~pGD----~V-   95 (431)
T cd00617          33 AMSDYQWAAMML---GDEA-YAGSKSFYDLEDAVQDLFG--------FKHIIPTHQGRGAENILFSILLKPGR----TV-   95 (431)
T ss_pred             HHHHHHHHHHHh---CCCc-cCCCCCHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHHhCCCCC----EE-
Confidence            455555555554   3334 9999999999999999994        35899999999999999999999998    77 


Q ss_pred             EcCCCChhHHHHHHhcCCEEEEEecCCCCC------C--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHH
Q psy13922        109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQ------W--GLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKEN  179 (509)
Q Consensus       109 v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~------~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~  179 (509)
                      +++|.|..+...+..+|++++.+++++..+      |  .+|++.|++.+++... .++++|++++|+||+ |.+++.++
T Consensus        96 ~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~-~~~~~I~v~~p~N~~gG~~~s~~~  174 (431)
T cd00617          96 PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA-ENIPYIVLTITNNTAGGQPVSMAN  174 (431)
T ss_pred             ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC-CCccEEEEECCcCCCCCccCCHHH
Confidence            689999999999999999999999975432      4  4999999999985210 148899999999998 99999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcc--cc----cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe------
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDN--VY----AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR------  247 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr------  247 (509)
                      +++|.++|++||++||+|++....  .+    .++....++.++..+            ++|+||.++ ++|+|      
T Consensus       175 l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e------------~~s~sd~~~-mS~~K~~~~~~  241 (431)
T cd00617         175 LREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIARE------------MFSYADGCT-MSAKKDGLVNI  241 (431)
T ss_pred             HHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHH------------hhccCCEEE-EEeecCCCCcc
Confidence            999999999999999999995321  11    122234556555333            345555553 55555      


Q ss_pred             eEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                      +||++.  .+++++++++.......+....+..+.             .               ...++...+.      
T Consensus       242 GG~i~~--~d~~l~~~~~~~~~~~~~~~~~gG~~~-------------r---------------~~~A~A~gL~------  285 (431)
T cd00617         242 GGFLAL--RDDELYEEARQRVVLYEGFVTYGGMAG-------------R---------------DMEALAQGLR------  285 (431)
T ss_pred             ceEEEe--CcHHHHHHHHHhccccCCccccccccH-------------H---------------HHHHHHHHHH------
Confidence            668862  456799888753321111111100000             0               1223332322      


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCC--CCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        328 PSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK--LPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                          +..+ .+.+.+. .++++++.+.|++. |+.+..|.|++++|++++  +|.     ....+ .++..++.+++++.
T Consensus       286 ----e~~~-~~~l~~~-~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~-----~~~~~-~~~~~la~~L~~e~  352 (431)
T cd00617         286 ----EAVE-EDYLRHR-VEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPH-----IPQEQ-FPAQALAAELYLEA  352 (431)
T ss_pred             ----hccc-HHHHHHH-HHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCC-----CCccc-CcHHHHHHHHHHHc
Confidence                0000 1222223 33568999999998 999999999999998875  110     00001 25777788999999


Q ss_pred             CeEEec-CCCC-CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe
Q psy13922        406 GICIVP-GAGF-GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI  483 (509)
Q Consensus       406 gI~v~p-g~~f-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~  483 (509)
                      ||.+.- |... +.+                                               +..+....+.--.+||.+
T Consensus       353 gV~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~rl~~  385 (431)
T cd00617         353 GVRAVELGIFSAGRD-----------------------------------------------PNTGENKYPELELVRLAI  385 (431)
T ss_pred             CeeEEeecceecccC-----------------------------------------------CCCCcccCCccceeEEec
Confidence            999764 4421 221                                               111111111122799998


Q ss_pred             e---cChHHHHHHHHHHHHHHHH
Q psy13922        484 L---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       484 ~---~~~~~i~~~~~~l~~~~~~  503 (509)
                      -   .+.+.++...+.|.++.++
T Consensus       386 prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         386 PRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             cccccCHHHHHHHHHHHHHHHhh
Confidence            7   5889999999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.95  E-value=9.7e-26  Score=234.38  Aligned_cols=335  Identities=16%  Similarity=0.182  Sum_probs=228.3

Q ss_pred             CCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         24 PRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        24 ~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |.+  |+.+.+++.+++.+.. .....|....|..++++++++++.+.+|.   +++|++|+| ++++..++.+++++||
T Consensus        53 ~~~~~~~~i~~a~~~~~~~~~-~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~~~~~~~l~~~gd  127 (397)
T PRK06939         53 LGLANHPELIAAAKAALDSHG-FGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDANGGLFETLLGKED  127 (397)
T ss_pred             cccCCCHHHHHHHHHHHHHcC-CCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHHHHHHHHhCCCCC
Confidence            566  6789999999887622 11222444578889999999999888773   367888888 6788899999999998


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc-cCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~-~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                          .|+++.|+|..+...++.+|.+++.++.       .|++.+++.+++... ..++++|++.+.+||+|...   ++
T Consensus       128 ----~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~---~~  193 (397)
T PRK06939        128 ----AIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA---PL  193 (397)
T ss_pred             ----EEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC---CH
Confidence                9999999999999999999999887753       378899888865321 12577777778899999864   48


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|.++|+++|++||+||+|....+...  ..+.... .++.    ...+++++|+||.+ +  |.|+||++   +++++
T Consensus       194 ~~l~~la~~~~~~li~De~~~~g~~~~~--~~~~~~~-~~~~----~~~~i~~~S~sK~~-~--g~r~G~v~---~~~~~  260 (397)
T PRK06939        194 PEICDLADKYDALVMVDDSHAVGFVGEN--GRGTVEH-FGVM----DRVDIITGTLGKAL-G--GASGGYTA---GRKEV  260 (397)
T ss_pred             HHHHHHHHHhCCEEEEECcccccCcCCC--CCCHHHH-cCCC----CCCcEEEEECHHHh-C--ccCceEEE---eCHHH
Confidence            9999999999999999999964222211  1111111 1111    11257888999998 3  45999998   78899


Q ss_pred             HHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        261 KAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       261 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      ++.+......+  .+.....                                 .+.++..+++           +..+.+
T Consensus       261 ~~~l~~~~~~~~~~~~~~~~---------------------------------~~~a~~~al~-----------~~~~~~  296 (397)
T PRK06939        261 IDWLRQRSRPYLFSNSLAPA---------------------------------IVAASIKVLE-----------LLEESD  296 (397)
T ss_pred             HHHHHHhCccccccCCCCHH---------------------------------HHHHHHHHHH-----------HHhcCH
Confidence            99887643211  1111110                                 1111111111           111135


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|+++ ++.+.++.++++.+. +.  ..          .++.+++..++++ ||.+.++. |...
T Consensus       297 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~-~~--~~----------~~~~~~~~~L~~~-gI~v~~~~-~~~~  360 (397)
T PRK06939        297 ELRDRLWENARYFREGMTAA-GFTLGPGEHPIIPVM-LG--DA----------KLAQEFADRLLEE-GVYVIGFS-FPVV  360 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEEE-EC--CH----------HHHHHHHHHHHHC-CceEeeeC-CCCC
Confidence            67788999999999999887 777666666665442 22  10          0234555566555 99998644 3220


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                      .                                              .+..        ++|++++  +++++|++++++
T Consensus       361 ~----------------------------------------------~~~~--------~iRi~~~~~~~~~~i~~~l~~  386 (397)
T PRK06939        361 P----------------------------------------------KGQA--------RIRTQMSAAHTKEQLDRAIDA  386 (397)
T ss_pred             C----------------------------------------------CCCc--------eEEEEECCCCCHHHHHHHHHH
Confidence            0                                              1212        8998885  899999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      |++++++.
T Consensus       387 L~~~~~~~  394 (397)
T PRK06939        387 FEKVGKEL  394 (397)
T ss_pred             HHHHHHHh
Confidence            99998754

>KOG0633|consensus

Probab=99.95  E-value=1.7e-27  Score=219.48  Aligned_cols=319  Identities=15%  Similarity=0.219  Sum_probs=235.0

Q ss_pred             cCCCcccCCCCcchHHHHHHHHHHHhhhcC------CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCCh
Q psy13922         42 RGQSVGSYTDSPGIEIIRRHVAQYISRRDG------QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYP  115 (509)
Q Consensus        42 ~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g------~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~  115 (509)
                      .....++|+++.- -++...+.++=+++..      .++++++|.++-|+-|.|..++++.+.||.   ++|+...|+|.
T Consensus        47 d~~e~~ryPdP~q-~efk~~~~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGk---eKIl~cPPtys  122 (375)
T KOG0633|consen   47 DANENPRYPDPEQ-MEFKYVYPDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGK---EKILDCPPTYS  122 (375)
T ss_pred             ccccCCCCcCHHH-cccccccCCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCc---cceeecCCcce
Confidence            3345565666543 4455555444433331      357889999999999999999999999982   38999999999


Q ss_pred             hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEE
Q psy13922        116 LYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF  195 (509)
Q Consensus       116 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI  195 (509)
                      .|.-.+.-++++++.+|++++  |.++.+.+.+.++...   .+|++++++|+||||..+..+++.+|.+.-.  |.++|
T Consensus       123 MY~v~A~iNd~eVvkvpl~pd--F~lnvdai~evl~~ds---~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVV  195 (375)
T KOG0633|consen  123 MYVVDAAINDAEVVKVPLNPD--FSLNVDAIAEVLELDS---KIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVV  195 (375)
T ss_pred             eEEEEeecCCceEEEecCCCC--ccccHHHHHHHHhccc---cceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEE
Confidence            999889999999999999875  7999999999887632   5899999999999999999999888887443  89999


Q ss_pred             EcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcc
Q psy13922        196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPT  275 (509)
Q Consensus       196 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~  275 (509)
                      +||+|.+|.-.+     |-..++..      +.|.+++.++||.| |++|+|+||..   .+..+++.+.+....+ +.+
T Consensus       196 vDEAYidFsg~~-----S~~~lV~k------YpNLivlqTlSKsf-GLAGiRvG~~~---~~~~ia~iln~~KaPY-NiS  259 (375)
T KOG0633|consen  196 VDEAYIDFSGVE-----SRMKLVKK------YPNLIVLQTLSKSF-GLAGIRVGYGA---FPLSIAEILNRAKAPY-NIS  259 (375)
T ss_pred             EeeeeEeecccc-----ccchHhHh------CCceeehhhhhhhc-CcceeEeeccc---ccHHHHHHHHhccCCc-ccc
Confidence            999999986321     22223332      45699999999999 99999999998   6888888887766644 444


Q ss_pred             hhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13922        276 VLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTF  355 (509)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  355 (509)
                      .++                                 ..+|++++-          +...+.++..++.+.+.+..+.+.|
T Consensus       260 ~~~---------------------------------s~~AL~Als----------~~n~kkme~~rdaiv~er~RL~keL  296 (375)
T KOG0633|consen  260 VAG---------------------------------SVAALAALS----------DSNGKKMEDVRDAIVRERERLFKEL  296 (375)
T ss_pred             chh---------------------------------HHHHHHhcC----------cccchHHHHHHHHHHHHHHHHHHHh
Confidence            441                                 233333332          1222338899999999999999999


Q ss_pred             hcCCCCee-ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC-Cccccccchhhhhh
Q psy13922        356 NSIEGMSC-NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP-GTYHFRQQVWWRHY  433 (509)
Q Consensus       356 ~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~-~~~~~r~~~~~~~~  433 (509)
                      ..+|++.- ..+....|+.+++.-....          -+..+..+.+.+.|+.|+-   .+..+ ..+++|++|+++++
T Consensus       297 t~v~~~~~~~gg~daNFiLi~v~~~~n~----------~akkly~q~at~~gVvVRf---rgse~~c~G~lRitvGt~Ee  363 (375)
T KOG0633|consen  297 TEVPFLNDYPGGSDANFILIEVTGGDNG----------MAKKLYKQDATKMGVVVRF---RGSEEGCKGYLRITVGTPEE  363 (375)
T ss_pred             hcCccccCCCCcccccEEEEEEcCCCcH----------HHHHHHHHHHHhcceEEEE---cCCccccceeEEEEcCCccc
Confidence            99987763 3344444555566411100          0223345667789999983   33333 68999999999999


Q ss_pred             hHHHHHHHhh
Q psy13922        434 TQRAIAKAKA  443 (509)
Q Consensus       434 ~~~~~~~~~~  443 (509)
                      |.-|+...++
T Consensus       364 ntvL~k~~K~  373 (375)
T KOG0633|consen  364 NTVLMKCLKQ  373 (375)
T ss_pred             chHHHHHHHh
Confidence            9999886654

>PLN02822 serine palmitoyltransferase

Probab=99.95  E-value=2.8e-25  Score=235.24  Aligned_cols=338  Identities=14%  Similarity=0.129  Sum_probs=237.3

Q ss_pred             CHHHHHHHHHHHhcccCCCc---ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSV---GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~---~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      |+.+++++.+++++...+..   +.|++..+..+|++++++++.       .++.|++++|.+ ++..++.++++++|  
T Consensus       125 ~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~~-a~~sai~a~~~~gd--  194 (481)
T PLN02822        125 NEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGLS-TIFSVIPAFCKKGD--  194 (481)
T ss_pred             CHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHHH-HHHHHHHHhCCCCC--
Confidence            78999999999998543222   247888889999999999994       457899998887 67889999999988  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc----CCc-eEEEEeCCCCCCCCCCCHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH----CNP-RAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~----~~~-~~ivi~~p~NPtG~~~s~~  178 (509)
                        .|++....|..+...+...|.+++.++.+       |.+.++..+++..+.    +++ ++|+++.++|++|.+++  
T Consensus       195 --~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~--  263 (481)
T PLN02822        195 --IIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP--  263 (481)
T ss_pred             --EEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC--
Confidence              88888888788878888889999988755       455566655532211    234 68888899999999999  


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                       +++|+++|++||+++|+||+|+...++..  .....+. .++..   ....|++.||||.+ |++|   ||++   +++
T Consensus       264 -L~~i~~l~~k~~~~LIvDEa~s~gvlG~~--G~G~~e~-~~v~~---~~~dii~~s~sKal-g~~G---G~i~---g~~  329 (481)
T PLN02822        264 -LDEIVRLKEKYRFRVLLDESNSFGVLGKS--GRGLSEH-FGVPI---EKIDIITAAMGHAL-ATEG---GFCT---GSA  329 (481)
T ss_pred             -HHHHHHHHHHcCCEEEEECCccccccCCC--CCChHHH-cCCCC---CCCeEEEecchhhh-hhCC---eEEE---cCH
Confidence             89999999999999999999997766421  1122221 11110   01146678999999 7888   9998   899


Q ss_pred             HHHHHHHHhhhc-ccCc--chhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCP--TVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++.++..... ..+.  +...                  +.|            +.+++..               .+
T Consensus       330 ~ii~~~~~~~~~~~fsa~lPp~~------------------~~A------------a~~aL~~---------------l~  364 (481)
T PLN02822        330 RVVDHQRLSSSGYVFSASLPPYL------------------ASA------------AITAIDV---------------LE  364 (481)
T ss_pred             HHHHHHHhcCCceeeccccCHHH------------------HHH------------HHHHHHH---------------HH
Confidence            999988754432 2222  2220                  000            1222221               11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCC---cHHHHHHHHhhcCeEEecC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP---SVLYAFELLERTGICIVPG  412 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~ll~~~gI~v~pg  412 (509)
                      ...++++.++++.+++.+.|++++|+.+..+.+++++++.++-+...       ...+   ...++.++++++||.+.|+
T Consensus       365 ~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~-------~~~~~~~~~~~~~~Ll~e~GV~v~~~  437 (481)
T PLN02822        365 DNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGS-------AKEDLSLLEHIADRMLKEDSVLVVVS  437 (481)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccc-------ccchHHHHHHHHHHHHhcCCEEEEee
Confidence            12567789999999999999998788887777888888777521000       0001   2456777887899999987


Q ss_pred             CC--CCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChH
Q psy13922        413 AG--FGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPE  488 (509)
Q Consensus       413 ~~--f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~  488 (509)
                      ..  |..                                                 +      ++..++|++++  .+++
T Consensus       438 ~~~~~~~-------------------------------------------------~------~~~~~lRi~is~~~t~e  462 (481)
T PLN02822        438 KRSTLDK-------------------------------------------------C------RLPVGIRLFVSAGHTES  462 (481)
T ss_pred             CCCCcCC-------------------------------------------------C------CCCCcEEEEECCCCCHH
Confidence            43  221                                                 0      11117998866  8999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy13922        489 KLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       489 ~i~~~~~~l~~~~~~~~~  506 (509)
                      +|++++++|++++.+...
T Consensus       463 dI~~~~~~l~~~~~~~~~  480 (481)
T PLN02822        463 DILKASESLKRVAASVLK  480 (481)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999987653

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=1.9e-25  Score=228.84  Aligned_cols=321  Identities=16%  Similarity=0.133  Sum_probs=217.4

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCC----CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYT----DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~----~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      .|+.+++++.++++...... ..|.    ......++++++++++    +   .++.|++++|+.+.+ .++..++++||
T Consensus        31 ~~~~v~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~l~~~la~~~----~---~~~~i~~~~G~~~~~-~~l~~~~~~gd  101 (360)
T TIGR00858        31 SHPEVIQAAQQGAEQYGAGS-TASRLVSGNSPLHEELEEELAEWK----G---TEAALLFSSGYLANV-GVISALVGKGD  101 (360)
T ss_pred             CCHHHHHHHHHHHHhcCCCC-CCcCcccCCcHHHHHHHHHHHHHh----C---CCCEEEECchHHHHH-HHHHHhCCCCC
Confidence            35889999999987633211 1122    2233456777777776    3   356788888865544 57788888888


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+++.|+|..+...++..|.+++.++       .+|++.|++.++.... .++++|++.+++||||...+   ++
T Consensus       102 ----~v~~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~~~~~~~-~~~~~v~~~~~~~~~G~~~~---~~  166 (360)
T TIGR00858       102 ----LILSDALNHASLIDGCRLSGARVRRYR-------HNDVEHLERLLEKNRG-ERRKLIVTDGVFSMDGDIAP---LP  166 (360)
T ss_pred             ----EEEEEccccHHHHHHHHhcCCceEEec-------CCCHHHHHHHHHHccc-CCCeEEEEeCCccCCCCCcC---HH
Confidence                999999999999999999999988776       2488999998875210 14678888899999998876   88


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|+++|++||+||+|..+.++..  ..+..... .+.   ++.++|+++|+||.+ |++|   ||++   ++++++
T Consensus       167 ~i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~---~~~~~i~i~s~sK~~-~~~g---G~~~---~~~~~~  233 (360)
T TIGR00858       167 QLVALAERYGAWLMVDDAHGTGVLGED--GRGTLEHF-GLK---PEPVDIQVGTLSKAL-GSYG---AYVA---GSQALI  233 (360)
T ss_pred             HHHHHHHHcCcEEEEECcccccCcCCC--CCchHHhc-CCC---ccCCcEEEEechhhh-hccC---cEEE---cCHHHH
Confidence            999999999999999999987655421  12222211 111   123488899999999 6655   8987   788998


Q ss_pred             HHHHHhhhcc--c-CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISAM--L-CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......+  . ..+..                                  .+.++..+++           +..+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~-----------~~~~~~  268 (360)
T TIGR00858       234 DYLINRARTLIFSTALPPA----------------------------------VAAAALAALE-----------LIQEEP  268 (360)
T ss_pred             HHHHHhCccceecCCCCHH----------------------------------HHHHHHHHHH-----------HHhhCH
Confidence            8886543221  1 12222                                  2222222211           111234


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      .+++.++++++++.+.|+++ ++++.++ ++.++|+.+....            ++.++ .+.|.++||.+.++..+...
T Consensus       269 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~-~~~~~~~~~~~~~------------~~~~~-~~~l~~~gI~v~~~~~~~~~  333 (360)
T TIGR00858       269 WRREKLLALIARLRAGLEAL-GFTLMPS-CTPIVPVIIGDNA------------SALAL-AEELQQQGIFVGAIRPPTVP  333 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCccCCC-CCCEEEEEeCCHH------------HHHHH-HHHHHHCCeeEeeeCCCCCC
Confidence            66789999999999999987 6776654 4556776554111            23344 45556779999987655431


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+..        ++|+++.  ++++++++++++
T Consensus       334 -----------------------------------------------~~~~--------~iRis~~~~~~~~~i~~~l~~  358 (360)
T TIGR00858       334 -----------------------------------------------AGTS--------RLRLTLSAAHTPGDIDRLAEA  358 (360)
T ss_pred             -----------------------------------------------CCCc--------eEEEEEcCCCCHHHHHHHHHh
Confidence                                                           1222        8999998  699999999987


Q ss_pred             HH
Q psy13922        497 FR  498 (509)
Q Consensus       497 l~  498 (509)
                      |+
T Consensus       359 l~  360 (360)
T TIGR00858       359 LK  360 (360)
T ss_pred             hC
Confidence            73

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.95  E-value=6.9e-25  Score=227.89  Aligned_cols=324  Identities=17%  Similarity=0.210  Sum_probs=220.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCc---ch----HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSP---GI----EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~---g~----~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      ++.+++++.+++.+..   . .|+++.   |.    .++++++|++++        .+++++++|+++|+..++.+++++
T Consensus        54 ~~~v~~~~~~~~~~~~---~-~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii~~~~~~a~~~~~~~l~~~  121 (393)
T TIGR01822        54 HPDLIQAAKDALDEHG---F-GMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTILYASCFDANGGLFETLLGA  121 (393)
T ss_pred             CHHHHHHHHHHHHHhC---C-CCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEEECchHHHHHHHHHHhCCC
Confidence            6789999999888721   2 254444   65    778888888883        256788889999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      ||    .|+++.|.|..+...++..+.+.+.++       .+|++.|++.+++.... .++++|++++++||||.+.+  
T Consensus       122 gd----~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~--  188 (393)
T TIGR01822       122 ED----AIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP--  188 (393)
T ss_pred             CC----EEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC--
Confidence            98    999999999999988888887775543       46899999999863221 26788888899999999977  


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                       +++|+++|++||+++|+||+|.....+.  ...+..... ++.    ....+++.|+||.+   +|+|+||++   +++
T Consensus       189 -l~~i~~la~~~~~~li~De~~~~g~~~~--~~~~~~~~~-~~~----~~~di~~~s~sK~l---~g~r~G~~~---~~~  254 (393)
T TIGR01822       189 -LDEICDLADKYDALVMVDECHATGFLGP--TGRGSHELC-GVM----GRVDIITGTLGKAL---GGASGGFTT---ARK  254 (393)
T ss_pred             -HHHHHHHHHHcCCEEEEECCccccCcCC--CCCchHHhc-CCC----CCCeEEEEEChHHh---hCCCcEEEE---eCH
Confidence             8999999999999999999996433221  111222211 111    11247778999987   367999997   789


Q ss_pred             HHHHHHHHhhhcc--cCc-chhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        259 GVKAMLHKSISAM--LCP-TVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       259 ~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++.+......+  .+. +..                                  .+.++..+++           ..+
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~-----------~~~  289 (393)
T TIGR01822       255 EVVELLRQRSRPYLFSNSLPPA----------------------------------VVGASIKVLE-----------MLE  289 (393)
T ss_pred             HHHHHHHHhCccceecCCCCHH----------------------------------HHHHHHHHHH-----------HHh
Confidence            9999887643211  111 111                                  1111111111           112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      +.+++++.++++++++.+.|++. |+.+.++.+.++.+ .+.  ..          .....+...++ ++||.+. +..|
T Consensus       290 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i-~~~--~~----------~~~~~l~~~L~-~~gI~v~-~~~~  353 (393)
T TIGR01822       290 ASNELRDRLWANTRYFRERMEAA-GFDIKPADHPIIPV-MLY--DA----------VLAQRFARRLL-EEGIYVT-GFFY  353 (393)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEE-EeC--CH----------HHHHHHHHHHH-HCCeeEe-eeCC
Confidence            24567888999999999999887 77766555554332 222  10          01344445555 5599987 5444


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAM  493 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~  493 (509)
                      ...+                                              .+        ..++|++++  +++++|+++
T Consensus       354 ~~~~----------------------------------------------~~--------~~~iRis~~~~~t~edi~~~  379 (393)
T TIGR01822       354 PVVP----------------------------------------------KG--------QARIRVQISAAHTEEQLDRA  379 (393)
T ss_pred             CCCC----------------------------------------------CC--------CceEEEEECCCCCHHHHHHH
Confidence            3200                                              12        127898876  789999999


Q ss_pred             HHHHHHHHHHH
Q psy13922        494 LEKFREFHEEF  504 (509)
Q Consensus       494 ~~~l~~~~~~~  504 (509)
                      +++|+++.+++
T Consensus       380 ~~~l~~~~~~~  390 (393)
T TIGR01822       380 VEAFTRIGREL  390 (393)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.95  E-value=1.3e-25  Score=228.09  Aligned_cols=289  Identities=14%  Similarity=0.113  Sum_probs=190.0

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      |..||.+++++.+....     ...|+|..+..+|+++++++++        .+.+++++|+++++..++.+++.+||  
T Consensus        10 ~~p~~~~~~a~~~~~~~-----~~~Y~~~~~~~~L~~~la~~~g--------~~~~~v~~~g~~a~~~~l~~~~~~gd--   74 (333)
T PRK10534         10 TRPSRAMLEAMMAAPVG-----DDVYGDDPTVNALQDYAAELSG--------KEAALFLPTGTQANLVALLSHCERGE--   74 (333)
T ss_pred             CCCCHHHHHHHHhccCC-----CcccCCCHHHHHHHHHHHHHhC--------CCeEEEeCchHHHHHHHHHHhcCCCC--
Confidence            33567888888664433     3458777788999999999983        24456888888888888888888888  


Q ss_pred             CCeEEEcCCCChh-HHHH-HHhcC-CEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHH
Q psy13922        104 KPGVLIPIPQYPL-YSAS-LAEFN-MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       104 ~~~Vlv~~p~y~~-~~~~-~~~~g-~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                        .|+++.|+|.. |... ....+ .+++.++.++  +|.+|+++|++++.+...+ .++++|+++||+  +|.+++.++
T Consensus        75 --~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~  148 (333)
T PRK10534         75 --EYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREY  148 (333)
T ss_pred             --eeEEechhhhhHhcCCchHHhcCceEEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHH
Confidence              99998888753 3211 23333 6778777653  4789999999988641100 147899999766  499999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE-EEeeecCCH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG-YSEVINLDP  258 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G-~v~~~~~~~  258 (509)
                      +++|+++|++++++||+||+|.......  ...+...+..       ..+.++ .||||.| |++   +| |++   +++
T Consensus       149 l~~i~~~~~~~~~~lvvDEA~~~~~~~~--~~~~~~~~~~-------~~~~~~-~s~SK~~-~~~---~G~~~~---~~~  211 (333)
T PRK10534        149 LKQAWEFTRERNLALHVDGARIFNAVVA--YGCELKEITQ-------YCDSFT-ICLSKGL-GTP---VGSLLV---GNR  211 (333)
T ss_pred             HHHHHHHHHHcCCeEEeeHHHHHHHHHH--cCCCHHHHHh-------cCCEEE-EEeEcCC-CCc---ccceEE---cCH
Confidence            9999999999999999999987322110  0112222211       111333 3899998 553   67 565   899


Q ss_pred             HHHHHHHHhhhcccC-cchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLC-PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+.+....+.. .+..+                .                .+++....++          .    .
T Consensus       212 ~~i~~~~~~~~~~~~~~~~~~----------------~----------------~~a~~~~~l~----------~----~  245 (333)
T PRK10534        212 DYIKRARRWRKMTGGGMRQAG----------------I----------------LAAAGLYALK----------H----N  245 (333)
T ss_pred             HHHHHHHHHHHHhCCchhhHH----------------H----------------HHHHHHHHHH----------h----h
Confidence            999999877653221 11110                0                1222111111          1    1


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      .+.++...++++++.+.|+++ |+.+.+|+ +.|+|++++.             .+... +.++|.++||.++||
T Consensus       246 ~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~-~nfv~~~~~~-------------~~~~~-~~~~l~~~gi~v~~~  304 (333)
T PRK10534        246 VARLQEDHDNAAWLAEQLREA-GADVMRQD-TNMLFVRVGE-------------EQAAA-LGEYMRERNVLINAS  304 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCccCCCC-ceEEEEECCc-------------hhHHH-HHHHHHHcCeeecCC
Confidence            122233445678999999998 88888775 6677876641             01233 467888899999875

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=5.5e-25  Score=226.69  Aligned_cols=179  Identities=12%  Similarity=0.097  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE  135 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~  135 (509)
                      ..+++.+|+++    |    .+.+++++|+++++..++.++.++||    .|+++.+.|.+....++..|++++.++.+.
T Consensus        54 ~~~~e~lA~~~----g----~~~~~i~~g~~~a~~~~~~~l~~~gd----~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~  121 (370)
T TIGR02539        54 HDFLEDLAEFL----G----MDEARVTHGAREGKFAVMHALCKEGD----WVVLDGLAHYTSYVAAERAGLNVKEVPHTG  121 (370)
T ss_pred             HHHHHHHHHHh----C----CCceEEECChHHHHHHHHHHhhCCCC----EEEECCcccHHHHHHHHHcCCEEEEEecCC
Confidence            56777788877    3    24677899999999999999998888    999998887776678888999999999876


Q ss_pred             CCCCCCCHHHHHHHHHhhhcc--CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcccc
Q psy13922        136 SKQWGLPISELERSITEARKH--CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS  213 (509)
Q Consensus       136 ~~~~~~d~~~L~~~i~~~~~~--~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~  213 (509)
                      +.+|.+|++.|++.+++..+.  .++++|++++|+||+|...+   +++|+++|+++|+++|+|++|......     .+
T Consensus       122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~-----~~  193 (370)
T TIGR02539       122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP-----VS  193 (370)
T ss_pred             cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC-----CC
Confidence            556889999999998752111  25789999999999999877   888888999999999999999874321     12


Q ss_pred             HHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       214 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ....         +. .++++|+||.+ | +|.|+||++   .++++++.+.+...
T Consensus       194 ~~~~---------~~-di~v~s~sK~~-~-~~g~~G~l~---~~~~~i~~l~~~~~  234 (370)
T TIGR02539       194 AKEI---------GA-DFIVGSGHKSM-A-ASGPCGVLG---MSEEWEDIVLRKSR  234 (370)
T ss_pred             HHHc---------CC-CEEEeeCcccc-c-CCCCEEEEE---ECHHHHhhhccccc
Confidence            2111         12 24468999999 6 577899998   78999998876553

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.94  E-value=7.7e-25  Score=226.85  Aligned_cols=331  Identities=15%  Similarity=0.209  Sum_probs=227.5

Q ss_pred             CCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         24 PRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        24 ~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      +.+  ++.+++++.+++.+.. ...+.|....|..++++++++++.+.+|.   ++.+++|+|+ +++..++.+++++||
T Consensus        44 ~g~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG~-~a~~~a~~~~~~~gd  118 (385)
T TIGR01825        44 LGFADHPRLKEAAAQAIQQYG-VGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSGF-NTNQGVLSALLRKGD  118 (385)
T ss_pred             cCCCCCHHHHHHHHHHHHHcC-CCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcHH-HHHHHHHHHhCCCCC
Confidence            455  6788898888887532 22345888889999999999999888772   4568888885 566688888998888


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+++.|+|..+...+...|.++..++       .+|++.+++.+..... +++++|++++++||||.+.+   ++
T Consensus       119 ----~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~-~~~~~v~~~~v~~~tG~~~~---~~  183 (385)
T TIGR01825       119 ----IVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPS-YGKKLIVTDGVFSMDGDVAP---LP  183 (385)
T ss_pred             ----EEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhcc-CCCeEEEEecCCcCCCCccC---HH
Confidence                999999999999888888888877653       5688889888775311 25788888899999999877   78


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|++||+++|+||+|..+.++.... .....+  ++.    ...++++.||||.+ |++|   ||++   ++++++
T Consensus       184 ~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~--~~~----~~~~i~~~s~sK~~-~~~g---G~~~---~~~~~~  249 (385)
T TIGR01825       184 EIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHF--GLE----DKVDIQVGTLSKAI-GVVG---GYAA---GHKELI  249 (385)
T ss_pred             HHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhc--CCC----cCCcEEEEeccHHh-hcCC---CEEe---cCHHHH
Confidence            89999999999999999998766542111 111111  111    12378889999999 6655   9987   788899


Q ss_pred             HHHHHhhhcc--cC-cchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISAM--LC-PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......+  .+ .+..                                  .+.++..+++          ...+ ..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~----------~~~~-~~  284 (385)
T TIGR01825       250 EYLKNRARPFLFSTAQPPA----------------------------------VVAALAAAVD----------ELQR-SP  284 (385)
T ss_pred             HHHHHhCccccccCCCCHH----------------------------------HHHHHHHHHH----------HHhc-CH
Confidence            8887543211  11 1222                                  2222222211          0000 12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      +..+.+.++++++.+.|+++ |+++..+.++++.+. +..+.            .+..+...++++ ||.+. +..|+..
T Consensus       285 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~L~~~-gi~v~-~~~~~~~  348 (385)
T TIGR01825       285 ELMERLWDNTRFFKAGLGKL-GYDTGGSETPITPVV-IGDEK------------AAQEFSRRLFDE-GIFAQ-SIVFPTV  348 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEEE-ECCHH------------HHHHHHHHHHHC-CcEEc-ccCCCCC
Confidence            35566777889999999887 888877776655442 32110            134455555555 99885 4444320


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                      +                                              .+..        ++|+++.  +++++|++++++
T Consensus       349 ~----------------------------------------------~~~~--------~iRi~~~~~~~~e~i~~~~~~  374 (385)
T TIGR01825       349 P----------------------------------------------RGTA--------RIRNIPTAEHTKDDLDQALDA  374 (385)
T ss_pred             C----------------------------------------------CCCc--------eEEEEEcCCCCHHHHHHHHHH
Confidence            0                                              1222        8999864  899999999999


Q ss_pred             HHHHHHH
Q psy13922        497 FREFHEE  503 (509)
Q Consensus       497 l~~~~~~  503 (509)
                      |++++++
T Consensus       375 l~~~~~~  381 (385)
T TIGR01825       375 YEKVGKE  381 (385)
T ss_pred             HHHHHHH
Confidence            9998864

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=2.6e-25  Score=231.32  Aligned_cols=217  Identities=15%  Similarity=0.168  Sum_probs=153.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCC---C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG---K  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~---~  103 (509)
                      .+.+.+++.+++..... ....|+     .++++++++++.+..+    .+++++|+|+++|+..+++.++..+++   .
T Consensus        57 ~p~v~~a~~~~~~~~~~-~~~~~~-----~~~~~~la~~l~~~~~----~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~  126 (396)
T PRK02627         57 HPKLVEAIQEQAAKLIH-TSNLYY-----IEPQEELAEKLVELSG----MDKVFFCNSGAEANEAAIKLARKYGHKKGIE  126 (396)
T ss_pred             CHHHHHHHHHHHhhccc-cccccC-----CHHHHHHHHHHHhhcC----CCEEEECCCcHHHHHHHHHHHHHHhcccCCC
Confidence            37899999888876321 111132     5678888888876644    479999999999999999988765531   1


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEE-EE---EecCCCCCC----CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC-CC
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQ-IG---YYLDESKQW----GLPISELERSITEARKHCNPRAIVIINPGNPTG-QV  174 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~-~~---v~~~~~~~~----~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG-~~  174 (509)
                      ++.|++..+.|+++.......+... ..   .+..+  ++    ..|++.+++.+.+     ++++|++++++||+| ..
T Consensus       127 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~i~~-----~~~~vii~p~~~~~G~~~  199 (396)
T PRK02627        127 KPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVE--GFIYVPFNDIEALKAAITD-----KTAAVMLEPIQGEGGVNP  199 (396)
T ss_pred             CCeEEEECCCcCcccHHHHHhcCCccccccCCCCCC--CceEeCCCCHHHHHHhcCC-----CeEEEEEecccCCCCCcc
Confidence            1489999999998866655443221 11   11111  11    2288999998865     799999998899999 68


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      ++++++++|.++|++||+++|+||+|.+|.+.+  .+.+....  +..     .+   +.+|||.+ | +|+|+||++  
T Consensus       200 ~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g--~~~~~~~~--~~~-----pd---i~t~sK~~-~-~G~rig~~~--  263 (396)
T PRK02627        200 ADKEYLQALRELCDENGILLILDEVQTGMGRTG--KLFAYQHY--GIE-----PD---IMTLAKGL-G-GGVPIGAVL--  263 (396)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEechhcCCCccC--ceeeehhc--CCC-----CC---EEEEcchh-h-CCcccEEEE--
Confidence            999999999999999999999999999886654  22222111  111     11   33789999 6 899999998  


Q ss_pred             cCCHHHHHHHHHhhh-cccCcchh
Q psy13922        255 NLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                       +++++++.+..... ...+.+.+
T Consensus       264 -~~~~~~~~~~~~~~~~t~~~~~~  286 (396)
T PRK02627        264 -AKEKVADVFTPGDHGSTFGGNPL  286 (396)
T ss_pred             -EcHHHHhccCCCCCCCCCCCCHH
Confidence             78888888764322 33445555

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-24  Score=223.37  Aligned_cols=374  Identities=15%  Similarity=0.183  Sum_probs=260.7

Q ss_pred             chHHHHHHHHhhcCC-----CCCC---CCCCCHHHHHHHHHHHhcccCCCc-ccCCCCc----chHHHHHHHHHHHhhhc
Q psy13922          4 VFSLSLQVLALVSLP-----QLFD---DPRFPDDVKQRAQAVLDGCRGQSV-GSYTDSP----GIEIIRRHVAQYISRRD   70 (509)
Q Consensus         4 ~~~~~~~~~~~~~~~-----~~~~---~~~~p~~v~~a~~~~l~~~~~~~~-~~Y~~~~----g~~~lr~~va~~l~~~~   70 (509)
                      +...+|+-+......     .+++   ....|..|++++.+.+........ +.|....    -+++.|+.++++++   
T Consensus         4 ~~~~~r~~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~---   80 (405)
T COG0520           4 DVAAVRADFPALKREVGKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN---   80 (405)
T ss_pred             ChHHHHhhCHHHhhccCCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC---
Confidence            344566666655432     2343   333589999999998875332222 2233332    45678888888884   


Q ss_pred             CCCCC-CCcEEEeCCHHHHHHHHHHHh---hcCCCCCCCeEEEcCCCChh----HHHHHHhcCCEEEEEecCCCCCCCCC
Q psy13922         71 GQPAD-WQDVILSAGASDGIKSVLKLL---IEDVDGKKPGVLIPIPQYPL----YSASLAEFNMEQIGYYLDESKQWGLP  142 (509)
Q Consensus        71 g~~~~-~~~i~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d  142 (509)
                         .+ .++|++|.|+|++++.+..++   .++||    +|+++.-.|++    |....++.|+++..+|.+++  ..+|
T Consensus        81 ---a~~~~eIvft~~tT~aln~va~~l~~~~~~gd----eIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~--g~~~  151 (405)
T COG0520          81 ---ADSSDEIVFTRGTTEALNLVARGLGRSLKPGD----EIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDD--GLLD  151 (405)
T ss_pred             ---CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCC----EEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCC--CCcC
Confidence               45 589999999999999999999   57777    99999988875    55666777999999998844  4889


Q ss_pred             HHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhC
Q psy13922        143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG  222 (509)
Q Consensus       143 ~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~  222 (509)
                      .+.++..+++     ++|+|.++..+|.||++.+   +++|+++|+++|+++++|.+++.-.     ....+..+.    
T Consensus       152 ~~~~~~~i~~-----~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h-----~~idv~~l~----  214 (405)
T COG0520         152 LDALEKLITP-----KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGH-----LPIDVQELG----  214 (405)
T ss_pred             HHHHHHhcCC-----CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCc-----cCCCchhcC----
Confidence            9999998887     8999999999999999988   9999999999999999999987632     233443332    


Q ss_pred             CCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHh
Q psy13922        223 EPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAV  302 (509)
Q Consensus       223 ~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (509)
                           .+++++ |..|++.|+.|  +|++.   ..+++.+.+.....+.......        -.+   .....+.....
T Consensus       215 -----~Df~af-sgHKwl~gP~G--iGvLy---~r~~~l~~l~P~~~gg~~~~~~--------~~~---~~~~~~~~p~r  272 (405)
T COG0520         215 -----CDFLAF-SGHKWLLGPTG--IGVLY---VRKELLEELEPFLGGGGMIEYV--------SRD---EGVTLAELPLR  272 (405)
T ss_pred             -----CCEEEE-cccccccCCCc--eEEEE---EchHHHhhcCCcccCCCceeee--------ccc---ccccccCcchh
Confidence                 225545 88994437557  56665   5888888884333211111111        000   11123444566


Q ss_pred             hhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC----CceeEEeecCCC
Q psy13922        303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV----QGAMYAFPQMKL  378 (509)
Q Consensus       303 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g~~~~~~~~~  378 (509)
                      ++.++++..+..++..+++        |..... ++++.++.+++.+++.+.|.++|+++++.+    .++.+.| .++ 
T Consensus       273 fe~gTpn~~~~i~l~aAl~--------~~~~ig-~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF-~v~-  341 (405)
T COG0520         273 FEAGTPNIAGAIGLAAALD--------YLLEIG-MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSF-NVK-  341 (405)
T ss_pred             hccCCchHHHHHhHHHHHH--------HHHHHh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEE-EeC-
Confidence            7788888777777777765        322222 678999999999999999999999998854    3444444 344 


Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhh
Q psy13922        379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLE  458 (509)
Q Consensus       379 ~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (509)
                                 |+. ..+ +...|.++||.++.|..|..+                               .++.+   .
T Consensus       342 -----------~~~-~~d-v~~~L~~~gI~vr~g~~ca~p-------------------------------~~~~~---~  374 (405)
T COG0520         342 -----------GIH-PHD-VATLLDEKGIAVRAGHHCAQP-------------------------------LHRLL---G  374 (405)
T ss_pred             -----------CCC-HHH-HHHHHHhCCeEEEeccccccH-------------------------------HHHhc---C
Confidence                       332 233 567888889999999877652                               11111   0


Q ss_pred             cccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHH
Q psy13922        459 RTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~  502 (509)
                      .      .+          .+|+|+.  ++.+||+..++.|+++.+
T Consensus       375 ~------~~----------~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         375 V------DA----------TIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             C------CC----------ceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            0      11          4999988  999999999999988764

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.94  E-value=9.2e-25  Score=213.63  Aligned_cols=335  Identities=19%  Similarity=0.244  Sum_probs=212.2

Q ss_pred             cCCCcccC-CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHH--HHHhhc-------CC-CCCCCeEEEc
Q psy13922         42 RGQSVGSY-TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSV--LKLLIE-------DV-DGKKPGVLIP  110 (509)
Q Consensus        42 ~~~~~~~Y-~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~--~~~l~~-------~g-d~~~~~Vlv~  110 (509)
                      ++..+.+| +...|++++|+-.++++.      +++++|++..+++-.|..-  ..++..       |. +..+-+.|+|
T Consensus        57 dG~D~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP  130 (425)
T PF12897_consen   57 DGTDCRNYPGGLDGIPEARELFAELLG------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP  130 (425)
T ss_dssp             TTEBTTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred             CCccccCCCCccCChHHHHHHHHHHhC------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence            34566779 889999999999999993      7899999987765444322  222211       11 1123478999


Q ss_pred             CCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEE-eCCCCCCCCCCCHHHHHHHHHH-HH
Q psy13922        111 IPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI-INPGNPTGQVLTKENIQDIIKF-AH  188 (509)
Q Consensus       111 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi-~~p~NPtG~~~s~~~l~~l~~i-a~  188 (509)
                      .|.|..+....+..|++.+.||+.++   ++|++.+++++.+.   +.+|.|+. +..+||||.+||+|-.++|+++ ..
T Consensus       131 vPGYDRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~D---~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~A  204 (425)
T PF12897_consen  131 VPGYDRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAED---PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTA  204 (425)
T ss_dssp             ES--HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHTS---TTEEEEEE-SSS-TTT-----HHHHHHHHHS--S
T ss_pred             CCCchHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhcC---CccceEEeCCCccCCCCccCCHHHHHHHhcCCcC
Confidence            99999999999999999999999988   88999999998753   36899995 6889999999999999999998 45


Q ss_pred             HCCcEEEEcccCCcccccCCCcc---ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        189 REKLFLFADEVYQDNVYAEGSKF---YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       189 ~~~i~lI~Deay~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      ..+..|+-|++|....+.++...   ..+.+.+.+.+..   .+++.+.|.||...  ||.+++++.   ++++-++.+.
T Consensus       205 A~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnp---drv~~F~STSKITf--~GaGva~~a---aS~~Nl~~~~  276 (425)
T PF12897_consen  205 APDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNP---DRVYVFASTSKITF--PGAGVAFFA---ASEANLAWIK  276 (425)
T ss_dssp             STT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-T---TSEEEEEESTTTS---TTSS-EEEE---E-HHHHHHHH
T ss_pred             CcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCC---CeEEEEeccccccc--CCcceeeee---cCHHHHHHHH
Confidence            68999999999988777433222   2455555555443   45888999999986  999999998   7888888777


Q ss_pred             Hhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH-HHHHHHHHHHHH
Q psy13922        266 KSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE-QFSREKQSVLDS  343 (509)
Q Consensus       266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~~  343 (509)
                      +..+ ...++...                                  .|..-..++.+       ++ ....|+++..+.
T Consensus       277 ~~~~~~tIgpdKv----------------------------------NQLRHvrff~d-------~~gGv~aHM~kHa~i  315 (425)
T PF12897_consen  277 KHLSVQTIGPDKV----------------------------------NQLRHVRFFKD-------AEGGVRAHMRKHAAI  315 (425)
T ss_dssp             HHHHHH-S---HH----------------------------------HHHHHHHHHHS-------HHTHHHHHHHHHHHH
T ss_pred             HHhcCceeCccHH----------------------------------HHHHHHHHhcC-------hhhHHHHHHHHHHHH
Confidence            6655 55666666                                  34333333321       34 455667777777


Q ss_pred             HHHHHHHHHHHHhc-CC---C-CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec-CCCCCC
Q psy13922        344 LKQRAKMVADTFNS-IE---G-MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP-GAGFGQ  417 (509)
Q Consensus       344 ~~~~~~~l~~~L~~-~~---g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p-g~~f~~  417 (509)
                      ++-+.+.+.+.|++ +.   + .+|..|.||||++++..-              .....+.+++++.||.+.| |..|..
T Consensus       316 l~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~--------------G~AkrvV~lakeAGV~LT~AGAtfPy  381 (425)
T PF12897_consen  316 LRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD--------------GTAKRVVELAKEAGVALTPAGATFPY  381 (425)
T ss_dssp             HHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST--------------T-HHHHHHHHHHTTEE---TTTTSGG
T ss_pred             HhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC--------------ChHHHHHHHHHHhCceeCCCCCCCCC
Confidence            77777777666655 32   3 578899999999976641              2333478999999999999 554433


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEK  496 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~  496 (509)
                                                                           ++.|....|||+-+ .+.++++.|++.
T Consensus       382 -----------------------------------------------------g~DP~D~nIRiAPS~P~leel~~Am~~  408 (425)
T PF12897_consen  382 -----------------------------------------------------GKDPRDSNIRIAPSYPSLEELETAMDV  408 (425)
T ss_dssp             -----------------------------------------------------G--TTS-EEEE--SSS-HHHHHHHHHH
T ss_pred             -----------------------------------------------------CCCCCCCcEEecCCCCCHHHHHHHHHH
Confidence                                                                 22233448999999 888999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      +.-+++-.
T Consensus       409 ~~~cv~la  416 (425)
T PF12897_consen  409 FATCVKLA  416 (425)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887643

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PLN02483 serine palmitoyltransferase

Probab=99.94  E-value=3.1e-24  Score=227.80  Aligned_cols=317  Identities=15%  Similarity=0.170  Sum_probs=213.2

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEE
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ  128 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~  128 (509)
                      |+...+..++++++|++++       .++.|++++|.. +...++.+++++||    .|+++.|+|.++...++..|+++
T Consensus       142 ~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G~~-an~~~i~al~~~Gd----~Vi~d~~~h~s~~~~~~~~Ga~v  209 (489)
T PLN02483        142 GGTTKLHRELEELVARFVG-------KPAAIVFGMGYA-TNSTIIPALIGKGG----LIISDSLNHNSIVNGARGSGATI  209 (489)
T ss_pred             cCCcHHHHHHHHHHHHHhC-------CCcEEEECCHHH-HHHHHHHHhCCCCC----EEEEcchhhHHHHHHHHHcCCeE
Confidence            8888888999999999994       356777777654 55577888999998    99999999999999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHhhhcc--CC-----ceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        129 IGYYLDESKQWGLPISELERSITEARKH--CN-----PRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       129 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~--~~-----~~~ivi~-~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      +.++.+       |++.+++.+++....  ++     .++++++ ...|++|...+   +++|+++|++||++||+||+|
T Consensus       210 ~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~  279 (489)
T PLN02483        210 RVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAH  279 (489)
T ss_pred             EEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcC
Confidence            999854       567777666542110  12     2555554 56799999966   999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc--cc-Ccchh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA--ML-CPTVL  277 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~--~~-~~~~~  277 (509)
                      +....+.  ...+..+.. ++..   ....|+++||||.+ |++|   ||++   +++++++.++.....  +. ..+..
T Consensus       280 s~g~~G~--~G~g~~~~~-~v~~---~~~dI~~~SfSKs~-g~~G---G~i~---~~~~li~~l~~~~~~~~~~~~~~p~  346 (489)
T PLN02483        280 SIGAVGK--TGRGVCELL-GVDP---ADVDIMMGTFTKSF-GSCG---GYIA---GSKELIQYLKRTCPAHLYATSMSPP  346 (489)
T ss_pred             ccCccCC--CCCchHHhc-CCCc---ccCcEEEEecchhc-ccCc---eEEE---cCHHHHHHHHHhCccccccCCcCHH
Confidence            8544321  112222221 1111   12367889999999 6766   9998   899999999875331  11 11222


Q ss_pred             hhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13922        278 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS  357 (509)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  357 (509)
                      .                 .|.             ..++++.+...+         ..++..+.++.++++++++.+.|++
T Consensus       347 ~-----------------~~~-------------~~aaL~~l~~~~---------g~~~~~~~~~~l~~~~~~l~~~L~~  387 (489)
T PLN02483        347 A-----------------VQQ-------------VISAIKVILGED---------GTNRGAQKLAQIRENSNFFRSELQK  387 (489)
T ss_pred             H-----------------HHH-------------HHHHHHHHHhCc---------cccchHHHHHHHHHHHHHHHHHHHH
Confidence            0                 110             122232222100         0011344567899999999999999


Q ss_pred             CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHH
Q psy13922        358 IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRA  437 (509)
Q Consensus       358 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~  437 (509)
                      + |+.+..+.++..+|+.+..+..            ...+..+++ ++||.++| ..|...+                  
T Consensus       388 ~-G~~v~~~~~sp~~~l~l~~~~~------------~~~~~~~Ll-~~GI~v~~-~~fp~~p------------------  434 (489)
T PLN02483        388 M-GFEVLGDNDSPVMPIMLYNPAK------------IPAFSRECL-KQNVAVVV-VGFPATP------------------  434 (489)
T ss_pred             C-CCcccCCCCCCEEEEEECCHHH------------HHHHHHHHH-HCCcEEee-eCCCCCC------------------
Confidence            8 8877766655565544432221            223455555 56999997 4443210                  


Q ss_pred             HHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHHHhhc
Q psy13922        438 IAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFLAKY  508 (509)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~~~~  508 (509)
                                                  .+.+        ++|++++  +++++|++++++|.++++.+.-||
T Consensus       435 ----------------------------~~~~--------~vRi~isa~~t~edId~~l~~L~~~~~~~~~~~  471 (489)
T PLN02483        435 ----------------------------LLLA--------RARICISASHSREDLIKALEVISEVGDLVGIKY  471 (489)
T ss_pred             ----------------------------CCCc--------eEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcee
Confidence                                        1112        7888876  799999999999999998877665

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=1.8e-24  Score=225.45  Aligned_cols=354  Identities=16%  Similarity=0.215  Sum_probs=229.1

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCc-ccCC----CCcchHHHHHHHHHHHhhhcCCCCC-CCcEEEeCCHHHHHHHHHHHh
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSV-GSYT----DSPGIEIIRRHVAQYISRRDGQPAD-WQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~-~~Y~----~~~g~~~lr~~va~~l~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l   96 (509)
                      ....|..+.+++.+.+........ ..|.    ......++|+.++++++      .+ +++|++|+|++++++.++.++
T Consensus        27 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~~v~~~~g~t~~l~~~~~~~  100 (403)
T TIGR01979        27 TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDEEIVFTRGTTESINLVAYSW  100 (403)
T ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCCeEEEeCCHHHHHHHHHHHh
Confidence            334678899999888775321111 0011    12355688899999883      33 679999999999999999886


Q ss_pred             ----hcCCCCCCCeEEEcCCCChhH----HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         97 ----IEDVDGKKPGVLIPIPQYPLY----SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        97 ----~~~gd~~~~~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                          .++|+    +|+++.+.|.+.    ...++..|++++.++.+++  +.+|++.+++.+.+     ++++|++++|+
T Consensus       101 ~~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~i~~-----~~~lv~~~~~~  169 (403)
T TIGR01979       101 GDSNLKAGD----EIVISEMEHHANIVPWQLLAERTGATLKFIPLDDD--GTLDLDDLEKLLTE-----KTKLVAITHVS  169 (403)
T ss_pred             hhhcCCCCC----EEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCC--CCCCHHHHHHHhcc-----CCeEEEEEccc
Confidence                35666    999999987763    3455678999999998744  47899999999977     79999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ||||..++   +++|.++|+++|+++|+|++|+....     ...+...         .. .+++.|++|.+ |++|  +
T Consensus       170 ~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~-----~~~~~~~---------~~-d~~~~s~~K~~-gp~G--~  228 (403)
T TIGR01979       170 NVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHM-----PVDVQAL---------DC-DFYVFSGHKMY-GPTG--I  228 (403)
T ss_pred             ccccccCC---HHHHHHHHHHcCCEEEEEchhhcCcc-----ccCcccc---------CC-CEEEEeccccc-CCCC--c
Confidence            99999998   88899999999999999999975321     1122111         11 35567999988 7777  7


Q ss_pred             EEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      |++.   .++++++.+......+......       .+....+..     ....++.++.......++..+++       
T Consensus       229 g~l~---~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~-----~~~~~~~gt~~~~~~~al~~al~-------  286 (403)
T TIGR01979       229 GVLY---GKEELLEQMPPFLGGGEMIAEV-------SFEETTYNE-----APHKFEAGTPNIAGVIGLGAAID-------  286 (403)
T ss_pred             eEEE---EchHHHhcCCCeecCCCceeec-------ccCccccCC-----ChhhcCCCCccHHHHHHHHHHHH-------
Confidence            8886   4777776654322111000000       000000000     00112222222223334433322       


Q ss_pred             chHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-----ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHH
Q psy13922        329 SYEQFSR-EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELL  402 (509)
Q Consensus       329 ~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll  402 (509)
                         .+.+ ..+.++++..++++.+.+.|+.+++++++.+.     ++++.+ .+.            +. +..+ +...|
T Consensus       287 ---~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~-~~~------------~~-~~~~-~~~~L  348 (403)
T TIGR01979       287 ---YLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISF-NVE------------GV-HPHD-VGTIL  348 (403)
T ss_pred             ---HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEE-EeC------------Cc-CHHH-HHHHH
Confidence               1111 15677888888999999999988888887543     455544 333            11 1233 45678


Q ss_pred             hhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE
Q psy13922        403 ERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT  482 (509)
Q Consensus       403 ~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls  482 (509)
                      +++||.+.+|..|..+                               ++..+           ...+        ++|+|
T Consensus       349 ~~~gI~v~~g~~~~~~-------------------------------~~~~~-----------~~~~--------~iRiS  378 (403)
T TIGR01979       349 DEEGIAVRSGHHCAQP-------------------------------LMRRF-----------GVPA--------TCRAS  378 (403)
T ss_pred             hhCCEEEcchhhhhHH-------------------------------HHHHh-----------CCCC--------EEEEE
Confidence            8899999987754330                               00000           0112        89999


Q ss_pred             ee--cChHHHHHHHHHHHHHHHHH
Q psy13922        483 IL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       483 ~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                      +.  +++++++.+++.|+++++.+
T Consensus       379 ~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       379 FYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             eccCCCHHHHHHHHHHHHHHHHHh
Confidence            98  79999999999999877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.94  E-value=1.9e-24  Score=221.57  Aligned_cols=340  Identities=12%  Similarity=0.111  Sum_probs=216.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhcccCCCcccCCCC-cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS-PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        21 ~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~-~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      .|++..|+.+++++.+.+..      ..|+.. .-..++++.+++++    |.+ ..+.+++|+|+++++..++.++..+
T Consensus         5 ~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~----g~~-~~~~~~~~~~~t~al~~~~~~~~~~   73 (356)
T cd06451           5 PGPSNVPPRVLKAMNRPMLG------HRSPEFLALMDEILEGLRYVF----QTE-NGLTFLLSGSGTGAMEAALSNLLEP   73 (356)
T ss_pred             CCCcCCCHHHHHHhCCCccC------CCCHHHHHHHHHHHHHHHHHh----cCC-CCCEEEEecCcHHHHHHHHHHhCCC
Confidence            36677889999998644322      113211 11234555555555    531 3345788999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      |+    .|+++.++|.+  +...++..|++++.++.+++  +.+|++.+++.+++.    ++++|++++|+||+|.+++ 
T Consensus        74 g~----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~i~~~----~~~~v~i~~~~~~~G~~~~-  142 (356)
T cd06451          74 GD----KVLVGVNGVFGDRWADMAERYGADVDVVEKPWG--EAVSPEEIAEALEQH----DIKAVTLTHNETSTGVLNP-  142 (356)
T ss_pred             CC----EEEEecCCchhHHHHHHHHHhCCCeEEeecCCC--CCCCHHHHHHHHhcc----CCCEEEEeccCCCcccccC-
Confidence            88    99999888765  56677888999999998754  578999999999753    6899999999999999988 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|.++|+++|+++|+|++|....     ...++...         +.+++ +.|.+|.+ |.| .++||++   .+
T Consensus       143 --~~~i~~~a~~~~~~li~D~~~~~g~-----~~~~~~~~---------~~d~~-~~s~~K~l-~~p-~g~G~l~---~~  200 (356)
T cd06451         143 --LEGIGALAKKHDALLIVDAVSSLGG-----EPFRMDEW---------GVDVA-YTGSQKAL-GAP-PGLGPIA---FS  200 (356)
T ss_pred             --HHHHHHHHHhcCCEEEEeeehhccC-----cccccccc---------CccEE-EecCchhc-cCC-CCcceeE---EC
Confidence              7788889999999999999886311     11111111         12254 55889999 433 3689998   57


Q ss_pred             HHHHHHHHH--hhhcc-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        258 PGVKAMLHK--SISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       258 ~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                      +++++.+..  ....+ ........     ......            ...+......+.++..++.        +- ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------~~~~t~~~~~~~a~~aal~--------~l-~~  254 (356)
T cd06451         201 ERALERIKKKTKPKGFYFDLLLLLK-----YWGEGY------------SYPHTPPVNLLYALREALD--------LI-LE  254 (356)
T ss_pred             HHHHHHHHhcCCCCceeecHHHHHh-----hhcccC------------CCCCCChHHHHHHHHHHHH--------HH-HH
Confidence            788877753  00000 00000000     000000            0000000001222222221        00 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC---CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSIEGMSCNPV---QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ..++...+..+++++++.+.|..+ |+++..+   .+++++|+.++  .         +. +...++..+.++.||.+.+
T Consensus       255 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~L~~~~gI~~~~  321 (356)
T cd06451         255 EGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVP--E---------GV-DGDEVVRRLMKRYNIEIAG  321 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECC--C---------CC-CHHHHHHHHHHhCCEEEec
Confidence            125677788889999999999988 8777532   24555665443  1         11 2344444444444999998


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEK  489 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~  489 (509)
                      |..+..                                                ++          ++|+|++  +++++
T Consensus       322 g~~~~~------------------------------------------------~~----------~iRis~~~~~~~e~  343 (356)
T cd06451         322 GLGPTA------------------------------------------------GK----------VFRIGHMGEATRED  343 (356)
T ss_pred             cccccc------------------------------------------------CC----------EEEEecCCCCCHHH
Confidence            774322                                                22          8999997  78999


Q ss_pred             HHHHHHHHHHHH
Q psy13922        490 LKAMLEKFREFH  501 (509)
Q Consensus       490 i~~~~~~l~~~~  501 (509)
                      ++.+++.|++++
T Consensus       344 v~~~~~~l~~~~  355 (356)
T cd06451         344 VLGVLSALEEAL  355 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02721 threonine aldolase

Probab=99.94  E-value=4.8e-24  Score=218.15  Aligned_cols=321  Identities=14%  Similarity=0.128  Sum_probs=205.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~~  105 (509)
                      ++.+.+++.+....   .....|++.  ..+++++++++++.        +.+++++++++++..++..+++ +||    
T Consensus        19 ~~~~~~a~~~~~~~---~~~~~~~~~--~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~~~~~gd----   81 (353)
T PLN02721         19 TDAMRAAMANAEVD---DDVLGYDPT--ALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVHCDVRGS----   81 (353)
T ss_pred             CHHHHHHHHhccCC---CcccCCCHH--HHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHHccCCCC----
Confidence            35666666543111   222324433  58999999999942        2345555556666677777776 888    


Q ss_pred             eEEEcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc--CCceEEEEeC-CCCCCCCCCCHHH
Q psy13922        106 GVLIPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH--CNPRAIVIIN-PGNPTGQVLTKEN  179 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~--~~~~~ivi~~-p~NPtG~~~s~~~  179 (509)
                      .|+++.|+|.....   .+...|++++.++.+++  +.+|++.+++.+++..+.  +++++|++++ +|||+|.+++.++
T Consensus        82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~  159 (353)
T PLN02721         82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNED--GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEY  159 (353)
T ss_pred             eEEEcCccceehhcccchhhhcCceeEecCCCcC--CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHH
Confidence            99999999865544   56778999999987644  578999999999742110  2689999965 6899999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|+++|+|++|.......  ...+.......       ...+++ |+||.+ |.   ++||+++  ++++
T Consensus       160 l~~l~~l~~~~g~~livD~a~~~~~~~~--~~~~~~~~~~~-------~d~~~~-s~sK~l-~~---~~G~~~~--~~~~  223 (353)
T PLN02721        160 TDKVGELAKRHGLKLHIDGARIFNASVA--LGVPVHRLVKA-------ADSVSV-CLSKGL-GA---PVGSVIV--GSKS  223 (353)
T ss_pred             HHHHHHHHHHcCCEEEEEchhhhcchhh--hCCCHHHHhhh-------CCEEEE-eccccc-CC---ceeeEEe--cCHH
Confidence            9999999999999999999985422110  01122222211       124434 799998 42   4666432  7899


Q ss_pred             HHHHHHHhhhcccC-cchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLC-PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+........+ .+..+..                               ...++..           ++.+   .+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~-----------l~~~---~~  258 (353)
T PLN02721        224 FIRKAKRLRKTLGGGMRQVGVL-------------------------------AAAALVA-----------LQEN---VP  258 (353)
T ss_pred             HHHhHHHHHHhcCCCeehhHHH-------------------------------HHHHHHH-----------HHHH---HH
Confidence            99988766553221 1111000                               1111111           1112   22


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCee--ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSC--NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ++. ...++++.+.+.|++++++.+  .++.++ ++|+++....         +. +... +.+.|.++||.++|+.   
T Consensus       259 ~~~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~-~~~~-~~~~L~~~gi~v~~~~---  322 (353)
T PLN02721        259 KLE-DDHKKAKLLAEGLNQIKGLRVNVAAVETN-IVYFDITDGS---------RI-TAEK-LCKSLEEHGVLLMPGN---  322 (353)
T ss_pred             HHH-HHHHHHHHHHHHHHhCCCcEEecCCccce-EEEEEccCCc---------cc-cHHH-HHHHHHhCCcEEecCC---
Confidence            222 235567889999998877754  344444 5776664110         11 2344 3555568899999753   


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAML  494 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~  494 (509)
                                                                       .+          ++|+++.  ++++++++++
T Consensus       323 -------------------------------------------------~~----------~lR~~~~~~~~~~~i~~~~  343 (353)
T PLN02721        323 -------------------------------------------------SS----------RIRVVTHHQISDSDVQYTL  343 (353)
T ss_pred             -------------------------------------------------Cc----------eEEEEecCcCCHHHHHHHH
Confidence                                                             22          8999986  7999999999


Q ss_pred             HHHHHHHH
Q psy13922        495 EKFREFHE  502 (509)
Q Consensus       495 ~~l~~~~~  502 (509)
                      ++|++++.
T Consensus       344 ~~l~~~~~  351 (353)
T PLN02721        344 SCFQQAAL  351 (353)
T ss_pred             HHHHHHhh
Confidence            99998764

>PRK02948 cysteine desulfurase; Provisional

Probab=99.94  E-value=6.2e-25  Score=227.31  Aligned_cols=347  Identities=14%  Similarity=0.137  Sum_probs=219.8

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCC----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTD----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ....|+.+++++.+.++.........|..    ..-..++|+.+++++    |  .++++|++|+|+++++..++.++..
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~   82 (381)
T PRK02948          9 TTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMI----G--GEEQGIYFTSGGTESNYLAIQSLLN   82 (381)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            34568899999988887532111111211    112345666777766    4  4678999999999999999988863


Q ss_pred             ----CCCCCCCeEEEcCCCChhHH---HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922         99 ----DVDGKKPGVLIPIPQYPLYS---ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus        99 ----~gd~~~~~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                          +++    .|+++...|..+.   ..++..|+++..++.+++  +.+|++.|++.+++     ++++|++++|+|||
T Consensus        83 ~~~~~g~----~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~-----~~~lv~~~~~~n~t  151 (381)
T PRK02948         83 ALPQNKK----HIITTPMEHASIHSYFQSLESQGYTVTEIPVDKS--GLIRLVDLERAITP-----DTVLASIQHANSEI  151 (381)
T ss_pred             hccCCCC----EEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCC--CCCCHHHHHHhcCC-----CCEEEEEECCcCCc
Confidence                455    8999886666544   446677999999998754  47899999998876     78999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      |.+++   +++|.++|+++|+++|+|+++.....     ...+..    .     +. .+++.|+||.+ |++|  +|++
T Consensus       152 G~~~~---~~~I~~l~~~~~~~vivD~~~~~g~~-----~~~~~~----~-----~~-d~~~~s~~K~~-gp~G--~G~l  210 (381)
T PRK02948        152 GTIQP---IAEIGALLKKYNVLFHSDCVQTFGKL-----PIDVFE----M-----GI-DSLSVSAHKIY-GPKG--VGAV  210 (381)
T ss_pred             Eeehh---HHHHHHHHHHcCCEEEEEChhhcccc-----ccCccc----C-----CC-CEEEecHHhcC-CCCc--EEEE
Confidence            99988   77899999999999999976643211     111111    1     11 34467999999 7888  6777


Q ss_pred             eeecCCHHH-HHHHHHhh--h---cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCC
Q psy13922        252 EVINLDPGV-KAMLHKSI--S---AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQP  325 (509)
Q Consensus       252 ~~~~~~~~~-~~~l~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  325 (509)
                      +   .++++ ...+....  .   ..+.++.+                                  ++.++..+++    
T Consensus       211 ~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~----------------------------------~~~a~~~al~----  249 (381)
T PRK02948        211 Y---INPQVRWKPVFPGTTHEKGFRPGTVNVP----------------------------------GIAAFLTAAE----  249 (381)
T ss_pred             E---EcCCCCCCCcccCCCCCCCcCCCCccHH----------------------------------HHHHHHHHHH----
Confidence            6   24332 11010000  0   11223333                                  4555555432    


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-ceeEE--eecCCCCHHHHHHHhhcCCCCcHHHHHHHH
Q psy13922        326 GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-GAMYA--FPQMKLPAKAIAKAKAEGKCPSVLYAFELL  402 (509)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll  402 (509)
                            ...+++++.++.++++++++.+.|+++ ++++.+.. ..+..  .+.+..+          ++. .+++ ...|
T Consensus       250 ------~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~----------~~~-~~~~-~~~l  310 (381)
T PRK02948        250 ------NILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIK----------GIE-GQYT-MLEC  310 (381)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeC----------CCC-HHHH-HHhc
Confidence                  222457888899999999999999988 66554322 12111  1111111          222 3333 3456


Q ss_pred             hhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE
Q psy13922        403 ERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT  482 (509)
Q Consensus       403 ~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls  482 (509)
                      +++||.+++|..|...                               ..+.-.+++.+|.......+        ++|+|
T Consensus       311 ~~~gI~v~~g~~c~~~-------------------------------~~~p~~~~~~~~~~~~~~~~--------~lRis  351 (381)
T PRK02948        311 NRRGIAISTGSACQVG-------------------------------KQEPSKTMLAIGKTYEEAKQ--------FVRFS  351 (381)
T ss_pred             ccCCEEEEchHhcCCC-------------------------------CCCCCHHHHHcCCChHHhCc--------eEEEE
Confidence            7889999998865431                               00001111222110001112        89999


Q ss_pred             ee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        483 IL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       483 ~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      +.  +++++++..++.|+++++++..
T Consensus       352 ~~~~~t~~di~~l~~~l~~~~~~~~~  377 (381)
T PRK02948        352 FGQQTTKDQIDTTIHALETIGNQFYR  377 (381)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            98  8999999999999999876654

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=4.1e-24  Score=218.23  Aligned_cols=329  Identities=15%  Similarity=0.154  Sum_probs=212.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhcccCCCcccCCC----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         20 LFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTD----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        20 ~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      .+|.+. |+.+++++++.+++.. .....|..    .....++++.+++++    +.    ++.++++++++++..++.+
T Consensus        11 ~~~~~~-~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----~~----~~~iv~~sg~~a~~~~~~~   80 (349)
T cd06454          11 YLGLAN-HPEVIEAAKEALDKYG-VGAGGSRLISGTSDLHEELEEELAEFH----GK----EAALVFSSGYAANDGVLST   80 (349)
T ss_pred             ccccCC-CHHHHHHHHHHHHHhC-CCCCCcCeecCCchHHHHHHHHHHHHh----CC----CCEEEeccHHHHHHHHHHH
Confidence            344443 3779999999998632 11122322    223355666666655    42    2345555667788888888


Q ss_pred             hhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922         96 LIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus        96 l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      ++++||    .|+++.|+|.++...++..|++++.++       .+|.+.+++.+++.....+++++++++++||||...
T Consensus        81 ~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~  149 (349)
T cd06454          81 LAGKGD----LIISDSLNHASIIDGIRLSGAKKRIFK-------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA  149 (349)
T ss_pred             hcCCCC----EEEEehhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc
Confidence            888888    999999999999888899999998775       247888998887632112577888899999999986


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      +   +++|+++|+++|+++|+|++|....+...  ...+..+..  .   ....+++++|+||.+ |++|   ||++   
T Consensus       150 ~---~~~i~~~~~~~~~~livD~a~~~g~~~~~--~~~~~~~~~--~---~~~~~i~~~s~sK~~-~~~g---G~i~---  212 (349)
T cd06454         150 P---LPELVDLAKKYGAILFVDEAHSVGVYGPH--GRGVEEFGG--L---TDDVDIIMGTLGKAF-GAVG---GYIA---  212 (349)
T ss_pred             C---HHHHHHHHHHcCCEEEEEccccccccCCC--CCChhhhcc--c---cccCcEEEeechhhh-cccC---CEEE---
Confidence            6   88999999999999999999975433211  111111110  0   122367788999999 5544   8887   


Q ss_pred             CCHHHHHHHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        256 LDPGVKAMLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       256 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      .++++++.+......+   ...+..                                  ...++...++           
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----------  247 (349)
T cd06454         213 GSKELIDYLRSYARGFIFSTSLPPA----------------------------------VAAAALAALE-----------  247 (349)
T ss_pred             CCHHHHHHHHHhchhhhccCCCCHH----------------------------------HHHHHHHHHH-----------
Confidence            7888888776543211   122222                                  2222222211           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      +..+....++.+.++++.+.+.|.++ ++....+.++++.++.+..+.            +..++. ..|.++||.+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~L~~~gI~~~~~  313 (349)
T cd06454         248 VLQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDPA------------KAVAFS-DALLERGIYVQAI  313 (349)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCChH------------HHHHHH-HHHHhCCceEEEe
Confidence            11113556788888999999999887 777665555555553232111            133434 4445559999986


Q ss_pred             CCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHH
Q psy13922        413 AGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKL  490 (509)
Q Consensus       413 ~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i  490 (509)
                      ......                                               .+.+        ++|+++.  ++++++
T Consensus       314 ~~~~~~-----------------------------------------------~~~~--------~iRi~~~~~~~~~~i  338 (349)
T cd06454         314 RYPTVP-----------------------------------------------RGTA--------RLRISLSAAHTKEDI  338 (349)
T ss_pred             cCCccC-----------------------------------------------CCCC--------eEEEEEeCCCCHHHH
Confidence            321110                                               1122        8999998  799999


Q ss_pred             HHHHHHHHHH
Q psy13922        491 KAMLEKFREF  500 (509)
Q Consensus       491 ~~~~~~l~~~  500 (509)
                      ++++++|+++
T Consensus       339 ~~~~~~l~~~  348 (349)
T cd06454         339 DRLLEALKEV  348 (349)
T ss_pred             HHHHHHHHHh
Confidence            9999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.94  E-value=1.6e-24  Score=227.47  Aligned_cols=355  Identities=13%  Similarity=0.170  Sum_probs=232.2

Q ss_pred             CCCCHHHHHHHHHHHhcccCCC--cccCCC---CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh--
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQS--VGSYTD---SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL--   96 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~--~~~Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--   96 (509)
                      ...|+.+++++.+.+.......  ...|..   .....++|+.++++++.    . ++++|++|+|++++++.+++.+  
T Consensus        42 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~----~-~~~~v~~t~g~t~al~~i~~~~~~  116 (424)
T PLN02855         42 SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINA----S-TSREIVFTRNATEAINLVAYTWGL  116 (424)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCC----C-CCCEEEEeCCHHHHHHHHHHHhhh
Confidence            3457889999988887642211  111211   12346888899988842    1 3579999999999999999874  


Q ss_pred             --hcCCCCCCCeEEEcCCCChh----HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         97 --IEDVDGKKPGVLIPIPQYPL----YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        97 --~~~gd~~~~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                        .++|+    +|+++.+.|.+    +...++..|++++.++.++++  .+|++.+++.+++     ++++|++++|+||
T Consensus       117 ~~~~~gd----~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~--~~~~~~l~~~i~~-----~t~lv~i~~~~n~  185 (424)
T PLN02855        117 ANLKPGD----EVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDE--VLDVEQLKELLSE-----KTKLVATHHVSNV  185 (424)
T ss_pred             hcCCCcC----EEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCC--CcCHHHHHHHhcc-----CceEEEEeCcccc
Confidence              46777    99999997765    455567789999999987543  5899999999976     7999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||..++   +++|+++|+++|+++|+|++|....     ....+...         +.++ ++.|++|.+ |++|  +||
T Consensus       186 tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g~-----~~~~~~~~---------~~d~-~~~s~~K~~-gp~G--~G~  244 (424)
T PLN02855        186 LGSILP---VEDIVHWAHAVGAKVLVDACQSVPH-----MPVDVQTL---------GADF-LVASSHKMC-GPTG--IGF  244 (424)
T ss_pred             ccccCC---HHHHHHHHHHcCCEEEEEhhhhcCC-----cCCCchhc---------CCCE-EEeeccccc-CCCc--cEE
Confidence            999998   7788999999999999999996421     11122211         1224 477999987 7666  788


Q ss_pred             EeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      ++   .++++++.+.............       ......+     ......++.|++...+..++..+++        +
T Consensus       245 l~---~~~~~~~~~~p~~~g~~~~~~~-------~~~~~~~-----~~~~~r~e~GT~~~~~~~~l~~al~--------~  301 (424)
T PLN02855        245 LW---GKSDLLESMPPFLGGGEMISDV-------FLDHSTY-----APPPSRFEAGTPAIGEAIGLGAAID--------Y  301 (424)
T ss_pred             EE---EchhhhhcCCCEecCCCceeee-------ecCcccc-----CCChhhccCCChHHHHHHHHHHHHH--------H
Confidence            87   5777777654322111100000       0000000     0001123444444445555555543        1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-------ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHh
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-------GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLE  403 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~  403 (509)
                      .. ...+++++++..++++.+.+.|.++++++++.+.       ++++. +.++            ++ +.++ +...|.
T Consensus       302 ~~-~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~-~~~~------------~~-~~~~-v~~~L~  365 (424)
T PLN02855        302 LS-EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCA-FNVE------------GI-HPTD-LSTFLD  365 (424)
T ss_pred             HH-HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEE-EEEC------------Cc-CHHH-HHHHhc
Confidence            11 1136788888999999999999998888877432       23433 3333            22 1233 345555


Q ss_pred             hc-CeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE
Q psy13922        404 RT-GICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT  482 (509)
Q Consensus       404 ~~-gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls  482 (509)
                      +. ||.++.|..|..                               ..+.      ..     .-.+        ++|+|
T Consensus       366 ~~~gI~v~~g~~c~~-------------------------------~~~~------~~-----g~~~--------~iRiS  395 (424)
T PLN02855        366 QQHGVAIRSGHHCAQ-------------------------------PLHR------YL-----GVNA--------SARAS  395 (424)
T ss_pred             ccCCEEEechhhhhH-------------------------------HHHH------Hh-----CCCC--------eEEEE
Confidence            55 999998886543                               1110      00     0012        89999


Q ss_pred             ee--cChHHHHHHHHHHHHHHHHH
Q psy13922        483 IL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       483 ~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                      +.  +++++++..++.|++++.++
T Consensus       396 ~~~ynt~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        396 LYFYNTKEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             eccCCCHHHHHHHHHHHHHHHHHH
Confidence            98  89999999999999998774

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.94  E-value=4.1e-24  Score=223.08  Aligned_cols=372  Identities=15%  Similarity=0.174  Sum_probs=242.8

Q ss_pred             hHHHHHHHHhhcC-----C-CCC---CCCCCCHHHHHHHHHHHhcccCCC-cccCC----CCcchHHHHHHHHHHHhhhc
Q psy13922          5 FSLSLQVLALVSL-----P-QLF---DDPRFPDDVKQRAQAVLDGCRGQS-VGSYT----DSPGIEIIRRHVAQYISRRD   70 (509)
Q Consensus         5 ~~~~~~~~~~~~~-----~-~~~---~~~~~p~~v~~a~~~~l~~~~~~~-~~~Y~----~~~g~~~lr~~va~~l~~~~   70 (509)
                      ...+|..+.+...     + -++   +....|..+++++.+.+....... .+.|.    -..-..++|+.++++++.  
T Consensus         5 ~~~~r~~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--   82 (406)
T PRK09295          5 VEKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA--   82 (406)
T ss_pred             hHHHHhhCccccCcCCCCceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc--
Confidence            3456666665542     1 233   344568899999988887522111 01111    012346788888888742  


Q ss_pred             CCCCCCCcEEEeCCHHHHHHHHHHHh----hcCCCCCCCeEEEcCCCChh----HHHHHHhcCCEEEEEecCCCCCCCCC
Q psy13922         71 GQPADWQDVILSAGASDGIKSVLKLL----IEDVDGKKPGVLIPIPQYPL----YSASLAEFNMEQIGYYLDESKQWGLP  142 (509)
Q Consensus        71 g~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d  142 (509)
                         .++++|++|+|++++++.++.++    .++||    .|+++.+.|++    +...++..|++++.++.+++  +.+|
T Consensus        83 ---~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d  153 (406)
T PRK09295         83 ---RSAEELVFVRGTTEGINLVANSWGNSNVRAGD----NIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQ  153 (406)
T ss_pred             ---CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcC----EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC--CCCC
Confidence               15679999999999999999874    46677    99999987764    45566778999999998754  4689


Q ss_pred             HHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhC
Q psy13922        143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG  222 (509)
Q Consensus       143 ~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~  222 (509)
                      ++.|++++++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+....     ...+...     
T Consensus       154 ~~~l~~~i~~-----~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~~~-----  215 (406)
T PRK09295        154 LETLPALFDE-----RTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHH-----PVDVQAL-----  215 (406)
T ss_pred             HHHHHHhcCC-----CcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCcc-----ccCchhc-----
Confidence            9999999876     7999999999999999998   78899999999999999999976322     1222211     


Q ss_pred             CCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHh
Q psy13922        223 EPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAV  302 (509)
Q Consensus       223 ~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (509)
                          +. .+++.|++|.+ |++|  +||++   .++++++.+.............      ....+..|.     .....
T Consensus       216 ----~~-D~~~~s~~K~~-gp~G--~G~l~---~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~-----~~~~r  273 (406)
T PRK09295        216 ----DC-DFYVFSGHKLY-GPTG--IGILY---VKEALLQEMPPWEGGGSMIATV------SLTEGTTWA-----KAPWR  273 (406)
T ss_pred             ----CC-CEEEeehhhcc-CCCC--cEEEE---EchHhHhhCCCcccCCceeeee------ecCCccccC-----Cchhh
Confidence                12 24456889988 7776  68887   5777776653221111000000      000000010     01123


Q ss_pred             hhcccCcccccchhhcccCCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC--ceeEEeecCCCC
Q psy13922        303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR-EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ--GAMYAFPQMKLP  379 (509)
Q Consensus       303 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g~~~~~~~~~~  379 (509)
                      ++.|+.+..+..++..+++        +  ..+ .++.++++.+++++++.+.|.+++++++..+.  .+++.+ .++  
T Consensus       274 ~e~GT~~~~~~~~l~~al~--------~--~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~-~~~--  340 (406)
T PRK09295        274 FEAGTPNTGGIIGLGAALD--------Y--VSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLG--  340 (406)
T ss_pred             cCCCCccHHHHHHHHHHHH--------H--HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEE-EEC--
Confidence            4555566556666666643        1  111 25677788888999999999998888876542  455544 232  


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhc
Q psy13922        380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLER  459 (509)
Q Consensus       380 ~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (509)
                                +. +.++ +...|+++||.++.|..|...                               .+.      .
T Consensus       341 ----------~~-~~~~-~~~~L~~~gI~v~~g~~c~~~-------------------------------~~~------~  371 (406)
T PRK09295        341 ----------KH-HAYD-VGSFLDNYGIAVRTGHHCAMP-------------------------------LMA------Y  371 (406)
T ss_pred             ----------Cc-CHHH-HHHHHHhCCeEEeccccchHH-------------------------------HHH------H
Confidence                      11 2233 356778999999998866541                               110      0


Q ss_pred             ccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHH
Q psy13922        460 TGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~  502 (509)
                      .|   .++          ++|+|+.  ++++||+..++.|+++..
T Consensus       372 ~~---~~~----------~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        372 YN---VPA----------MCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             HC---CCC----------EEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            00   012          8999998  899999999999988753

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.94  E-value=1.1e-24  Score=226.19  Aligned_cols=219  Identities=12%  Similarity=0.092  Sum_probs=150.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh----cCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI----EDVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~  102 (509)
                      +|.+.+++.+++.+..... ..|.     .+...++++.+.+..    ..++|++++|+++|+..+++.++    .+|+.
T Consensus        49 ~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~  118 (389)
T PRK01278         49 HPHLVEALKEQAEKLWHVS-NLYR-----IPEQERLAERLVENS----FADKVFFTNSGAEAVECAIKTARRYHYGKGHP  118 (389)
T ss_pred             CHHHHHHHHHHHHhcCccc-cccC-----ChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            6899999999988621111 1121     233444555554332    24689999999999999998874    35554


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEec-CC-CCCCC----CCHHHHHHHHHhhhccCCceEEEEeCCCCCCC-CCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYL-DE-SKQWG----LPISELERSITEARKHCNPRAIVIINPGNPTG-QVL  175 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~-~~~~~----~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG-~~~  175 (509)
                      .++.|++.++.|+++...+...+........ .+ ..++.    .|++.+++.+++     ++++|+++.++||+| ..+
T Consensus       119 ~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~avivep~~~~~G~~~~  193 (389)
T PRK01278        119 ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-----NTAAILIEPIQGEGGIRPA  193 (389)
T ss_pred             CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC-----CeEEEEEecccCCCCCcCC
Confidence            5668999999999988776655443222111 00 01111    589999998876     799999998899999 789


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      |++++++|.++|++||+++|+||+|.+|.+.+.  ..+....  ++.+     +   +.|+||.+ | +|+|+||++   
T Consensus       194 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~~--~~~p-----d---i~t~sK~l-~-~G~~ig~~~---  256 (389)
T PRK01278        194 PDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK--LFAHEWA--GVTP-----D---IMAVAKGI-G-GGFPLGACL---  256 (389)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--ceeeccc--CCCC-----C---EEEEehhc-c-CCcceEEEE---
Confidence            999999999999999999999999998866542  1111111  1111     1   34889999 5 899999998   


Q ss_pred             CCHHHHHHHHHhhh-cccCcchh
Q psy13922        256 LDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       256 ~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      +++++++.+..... .+.+.+.+
T Consensus       257 ~~~~~~~~~~~~~~~~t~~~~~~  279 (389)
T PRK01278        257 ATEEAAKGMTPGTHGSTYGGNPL  279 (389)
T ss_pred             EcHHHHhccCCCCCCCCCCccHH
Confidence            78888887765433 23345555

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=5.6e-24  Score=222.30  Aligned_cols=327  Identities=15%  Similarity=0.155  Sum_probs=217.4

Q ss_pred             CHHHHHHHHHHHhcccCCC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd  101 (509)
                      ++.+++++.+++.....+.   ...|+......+|++.+++++    |   .++.|++++|+ +++..++..+..  +++
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g---~~~~i~~~sG~-~a~~~~i~~l~~~~~g~  133 (410)
T PRK13392         62 HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----G---KESALLFTSGY-VSNDAALSTLGKLLPGC  133 (410)
T ss_pred             CHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----C---CCCEEEECcHH-HHHHHHHHHHhcCCCCC
Confidence            6789999999888743211   121333334567888888887    3   24567777765 677777776654  666


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+++.+.|..+...++..|.++..++.+       |.+.+++.++.... .++++|++++|+||||.+++   ++
T Consensus       134 ----~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~-~~t~~v~i~~~~n~tG~~~~---l~  198 (410)
T PRK13392        134 ----VILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASVDP-DRPKLIAFESVYSMDGDIAP---IE  198 (410)
T ss_pred             ----EEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhccC-CCCEEEEEeCCCCCCccccc---HH
Confidence                88887778888888888889988776432       55667666653211 26889999999999999988   88


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|+++|+++|+||+|....++..  ...+... .+...   .. .++++|+||.| |++|   ||++   ++++++
T Consensus       199 ~i~~l~~~~~~~livDea~~~g~~g~~--g~g~~~~-~~~~~---~~-div~~tlsK~~-g~~G---G~~~---~~~~~~  264 (410)
T PRK13392        199 AICDLADRYNALTYVDEVHAVGLYGAR--GGGIAER-DGLMD---RI-DMIQGTLAKAF-GCLG---GYIA---ASADLI  264 (410)
T ss_pred             HHHHHHHHcCCEEEEECCccccCcCCC--CCchhhh-ccCCC---CC-cEEEEEChHhh-hccc---chhh---cCHHHH
Confidence            899999999999999999995444321  1222111 11110   11 26688999999 7777   8987   789999


Q ss_pred             HHHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+++....+   ...+..                                  .++++..+++           ..++..
T Consensus       265 ~~l~~~~~~~~~s~~~~~~----------------------------------~~~a~~aaL~-----------~~~~~~  299 (410)
T PRK13392        265 DFVRSFAPGFIFTTALPPA----------------------------------VAAGATAAIR-----------HLKTSQ  299 (410)
T ss_pred             HHHHHhCcchhccCcCCHH----------------------------------HHHHHHHHHH-----------HHhcCH
Confidence            9888765432   122222                                  2222222222           111123


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ..++.+.++++++.+.|+++ |+.+.+++++++.. .+..+.            ...++...+++++||.+.++.....+
T Consensus       300 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i-~~~~~~------------~~~~~~~~L~~~~GI~v~~~~~p~~~  365 (410)
T PRK13392        300 TERDAHQDRVAALKAKLNAN-GIPVMPSPSHIVPV-MVGDPT------------LCKAISDRLMSEHGIYIQPINYPTVP  365 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEE-EeCCHH------------HHHHHHHHHHHhCCEEEeeeCCCCCC
Confidence            45577888899999999988 88887788777532 232111            12344556667889999986543331


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+..        ++|+++.  +++++++.+++.
T Consensus       366 -----------------------------------------------~~~~--------~lRis~~~~~t~edid~l~~a  390 (410)
T PRK13392        366 -----------------------------------------------RGTE--------RLRITPTPLHDDEDIDALVAA  390 (410)
T ss_pred             -----------------------------------------------CCCc--------eEEEEECCCCCHHHHHHHHHH
Confidence                                                           1222        8999985  899999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      |.++.+++
T Consensus       391 L~~~~~~~  398 (410)
T PRK13392        391 LVAIWDRL  398 (410)
T ss_pred             HHHHHHHc
Confidence            99887653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.94  E-value=2.9e-24  Score=222.38  Aligned_cols=354  Identities=13%  Similarity=0.110  Sum_probs=229.5

Q ss_pred             CCCCCHHHHHHHHHHHhcc--cCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh---
Q psy13922         23 DPRFPDDVKQRAQAVLDGC--RGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI---   97 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~--~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---   97 (509)
                      ....|+.|++++.+.+...  ++...+.|+ ..+...+++++++++.. .+. .++++|++|+|++++++.+++++.   
T Consensus         8 ~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~   84 (382)
T TIGR03403         8 TTMLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDE   84 (382)
T ss_pred             CCCCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhh
Confidence            4456789999999988763  233333354 34567899998888752 232 267899999999999999999863   


Q ss_pred             --cCCCCCCCeEEEcCCCChhHHHH---HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         98 --EDVDGKKPGVLIPIPQYPLYSAS---LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        98 --~~gd~~~~~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                        +++   ++.|+++.+.|+.+...   ++..|++++.++.+++  +.+|++.+++.+++     +++++++++|+||||
T Consensus        85 ~~~~~---~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~--g~~d~~~l~~~i~~-----~t~lv~~~~~~n~tG  154 (382)
T TIGR03403        85 ILKGG---KNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ--GTITAEQVREAITE-----KTALVSVMWANNETG  154 (382)
T ss_pred             cccCC---CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC--CCCCHHHHHHhccc-----CCeEEEEEcccCCCc
Confidence              332   23799998777665544   5567999999998754  47899999999876     789999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ..++   +++|.++|+++|+++++|+++.....     ...+..    .     +.+++ +.|++|.+ |++|+  |++.
T Consensus       155 ~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~-----~~~~~~----~-----~~D~~-~~s~~K~~-gp~G~--g~l~  213 (382)
T TIGR03403       155 MIFP---IKEIGEICKERGVLFHTDAVQAIGKI-----PVDVQK----A-----GVDFL-SFSAHKFH-GPKGV--GGLY  213 (382)
T ss_pred             cccC---HHHHHHHHHHcCCEEEEechhhcCCC-----ccCccc----c-----CCCEE-EEcchhhC-CCCce--EEEE
Confidence            9998   67888999999999999999864211     111111    1     23344 55889988 78885  6554


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      +  .+. +  .+...   ..+....           ..            ...++.+..++.++..++.          .
T Consensus       214 v--r~~-~--~~~p~---~~g~~~~-----------~~------------~~~gt~~~~~~~al~~al~----------~  252 (382)
T TIGR03403       214 I--RKG-V--ELTPL---FHGGEHM-----------GG------------RRSGTLNVPYIVAMGEAMR----------L  252 (382)
T ss_pred             E--CCC-C--CCCCc---ccCCCCC-----------CC------------cccCCcChHHHHHHHHHHH----------H
Confidence            2  222 1  01000   0000000           00            0011122224444444432          1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      ..+.++..+++++++++++.+.|.+++++.++.+..   +.++.+.++            ++. ... +...|.++||.+
T Consensus       253 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~-~~~~L~~~gI~v  318 (382)
T TIGR03403       253 ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK------------GVE-GEA-MLWDLNKAGIAA  318 (382)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeC------------CCC-HHH-HHHhhccCCEEE
Confidence            222366777889999999999999988888876531   223333343            222 233 334477889999


Q ss_pred             ecCCCCCCC-CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cC
Q psy13922        410 VPGAGFGQV-PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQ  486 (509)
Q Consensus       410 ~pg~~f~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~  486 (509)
                      +.|..|... ....++|++++...+                                ...+        .+|+|+.  ++
T Consensus       319 ~~g~~c~~~~~~~~~v~~~~g~~~~--------------------------------~~~~--------~iR~s~~~~~t  358 (382)
T TIGR03403       319 STGSACASEDLEANPVMVAIGADKE--------------------------------LAHT--------AIRLSLSRFTT  358 (382)
T ss_pred             EchhccCCCCCCcCHHHHHcCCChH--------------------------------HhCe--------eEEEECCCCCC
Confidence            998877542 122444444331100                                0112        7999999  89


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q psy13922        487 PEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       487 ~~~i~~~~~~l~~~~~~~~  505 (509)
                      .+||+.+++.|++++++++
T Consensus       359 ~~did~~~~~l~~~~~~~~  377 (382)
T TIGR03403       359 EEEIDYTIEVFKKAVQRLR  377 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987754

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.94  E-value=1.7e-24  Score=215.59  Aligned_cols=351  Identities=17%  Similarity=0.180  Sum_probs=251.3

Q ss_pred             CCCCHHHHHHHHHHHhcc--cCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh--h
Q psy13922         24 PRFPDDVKQRAQAVLDGC--RGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL--I   97 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~--~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~   97 (509)
                      ..+-+.+++++...+...  ++.+.+.|+.  .....+.|+.||+.++      +++++|+||+|+||+.+++++..  .
T Consensus        11 Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llg------a~~~eIiFTSG~TEsnNlaI~g~~~a   84 (386)
T COG1104          11 TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLG------ADPEEIIFTSGATESNNLAIKGAALA   84 (386)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhC------CCCCeEEEecCCcHHHHHHHHhhHHh
Confidence            345678999999998885  3444455543  2356778889999883      67799999999999999999983  3


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhc---CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEF---NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ....+++++|+++.-.|+...+.++.+   |+++..+|.+.++  .+|+++|++++++     ++.+|.+...||.+|++
T Consensus        85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G--~v~~e~L~~al~~-----~T~LVSim~aNnE~G~I  157 (386)
T COG1104          85 YRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG--LVDLEQLEEALRP-----DTILVSIMHANNETGTI  157 (386)
T ss_pred             hhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCC--eEcHHHHHHhcCC-----CceEEEEEecccCeeec
Confidence            322224569999999999988877766   9999999998764  8899999999998     79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      .|   +++|.++|+++++++++|.++...-     -...+..+         ..+.+++ |-+|.. |+.|+  |.+.+ 
T Consensus       158 Qp---I~ei~~i~k~~~i~fHvDAvQa~Gk-----ipi~~~~~---------~vD~ls~-SaHK~~-GpkGi--GaLyv-  215 (386)
T COG1104         158 QP---IAEIGEICKERGILFHVDAVQAVGK-----IPIDLEEL---------GVDLLSF-SAHKFG-GPKGI--GALYV-  215 (386)
T ss_pred             cc---HHHHHHHHHHcCCeEEEehhhhcCc-----eecccccc---------CcceEEe-ehhhcc-CCCce--EEEEE-
Confidence            88   9999999999999999999997621     22233222         1236666 669999 88884  55542 


Q ss_pred             cCCHHHHHHHHHhhh----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        255 NLDPGVKAMLHKSIS----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      ...-.+...+.-..+    ..+..+.+                                  +..++..++          
T Consensus       216 ~~~~~~~p~i~GGgQE~g~RsGTenv~----------------------------------~Ivg~~~A~----------  251 (386)
T COG1104         216 RPGVRLEPLIHGGGQERGLRSGTENVP----------------------------------GIVGFGKAA----------  251 (386)
T ss_pred             CCCCccCceeccCcCCCCCCCCCccHH----------------------------------HHHHHHHHH----------
Confidence            111222222211111    11222332                                  344444442          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCeeccC---CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSI-EGMSCNPV---QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                      ....++++....++..+++.+.+.|.+. |++.+...   .-...+.+-|+            |+..+.  +...|+.+|
T Consensus       252 ~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~------------gv~gE~--ll~~L~~~g  317 (386)
T COG1104         252 EIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFP------------GVEGES--LLLALDLAG  317 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeC------------CCcHHH--HHHhccccC
Confidence            2334447788888999999999999975 77665432   12223332233            332233  457788999


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |++-.|+.|...                               .+.+..+|.++|+......+        .+|+||+  
T Consensus       318 I~vStGSACsS~-------------------------------~~~pShVL~AmG~~~e~a~~--------siR~S~g~~  358 (386)
T COG1104         318 IAVSTGSACSSG-------------------------------SLEPSHVLRAMGISEELAHG--------SIRFSLGRF  358 (386)
T ss_pred             eEEeccccccCC-------------------------------CCCccHHHHHcCCChHHhCc--------cEEEEcCCC
Confidence            999999988762                               34567889999987766666        8999999  


Q ss_pred             cChHHHHHHHHHHHHHHHHHHh
Q psy13922        485 PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      +++++++.+++.|++++++.+.
T Consensus       359 tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         359 TTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999988765

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.94  E-value=4.6e-24  Score=217.00  Aligned_cols=264  Identities=14%  Similarity=0.072  Sum_probs=182.0

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..   . . .|++.....++++.+++++    |    ++++++++|+++++..++++++++||    
T Consensus        10 ~~~~v~~a~~~~~~~---~-~-~~~~~~~~~~l~~~~a~~~----g----~~~~~~~~~gt~a~~~~~~~l~~~gd----   72 (338)
T cd06502          10 PTPEMLEAMAAANVG---D-D-VYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHTQPGG----   72 (338)
T ss_pred             CCHHHHHHHHhcccC---C-c-ccCCCHHHHHHHHHHHHHh----C----CCeEEEecCchHHHHHHHHHhcCCCC----
Confidence            467888888776543   1 2 4766667788888888887    3    45788888888999999999999888    


Q ss_pred             eEEEcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc--cCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        106 GVLIPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARK--HCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~--~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      .|+++.|+|..+..   .....|++++.++.+.   +.+|++.|++++++..+  ..++++|++++|+|| |..++.+++
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l  148 (338)
T cd06502          73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDEL  148 (338)
T ss_pred             eEEEecCcceeeecCCcHHHHcCceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHH
Confidence            99999999876442   3445799999998753   47899999999874211  025889999999998 667799999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|+++|+++|+++|+|++|..+.....  ..++.....       ..+++ +.|+||.+ |++|   |++++  .++++
T Consensus       149 ~~i~~~~~~~~~~livDea~~~~~~~~~--~~~~~~~~~-------~~d~~-~~s~sK~~-~~~~---g~~~~--~~~~~  212 (338)
T cd06502         149 KAISALAKENGLPLHLDGARLANAAAAL--GVALKTYKS-------GVDSV-SFCLSKGG-GAPV---GAVVV--GNRDF  212 (338)
T ss_pred             HHHHHHHHHcCCeEeechHHHHHHHHhc--CCCHHHHHh-------cCCEE-EEeccccC-CCcc---ceEEE--CCHHH
Confidence            9999999999999999999865432111  113322211       12354 66999999 6776   44432  78999


Q ss_pred             HHHHHHhhhccc---CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        261 KAMLHKSISAML---CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       261 ~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++.+......+.   ..+.+                                  .+.+....++.        ..    .
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~L~~--------~~----~  246 (338)
T cd06502         213 IARARRRRKQAGGGMRQSGF----------------------------------LAAAGLAALEN--------DL----W  246 (338)
T ss_pred             HHHHHHHHHHhCCChhhHHH----------------------------------HHHHHHHHhcC--------ch----H
Confidence            999877653221   12222                                  22222222220        01    2


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEe
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF  373 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~  373 (509)
                      .+..+.+.++++++.+.|+++ ++.+.++.++++++
T Consensus       247 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~v  281 (338)
T cd06502         247 LRRLRHDHEMARRLAEALEEL-GGLESEVQTNIVLL  281 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCcccccCCeEEE
Confidence            234456667778899999888 56666777777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.94  E-value=5.3e-24  Score=221.55  Aligned_cols=330  Identities=15%  Similarity=0.130  Sum_probs=206.7

Q ss_pred             HHHHHHhhcCC--CCCC---CCCCCHHHHHHHHHHHhcccCCCcccCCCCcch----HHHHHHHHHHHhhhcCCCCCCCc
Q psy13922          8 SLQVLALVSLP--QLFD---DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGI----EIIRRHVAQYISRRDGQPADWQD   78 (509)
Q Consensus         8 ~~~~~~~~~~~--~~~~---~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~----~~lr~~va~~l~~~~g~~~~~~~   78 (509)
                      +|..+...+..  .+++   ....|+.+++++.+.+..........|....+.    .++|+.+++++    |  .++++
T Consensus         6 ~r~~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~----~--~~~~~   79 (397)
T TIGR01976         6 VRGQFPALADGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL----N--ADPPE   79 (397)
T ss_pred             HHhhCCcCCCCCeEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc----C--CCCCe
Confidence            45445443322  3443   333578999999998876322222336554443    46666677666    4  34557


Q ss_pred             EEEeCCHHHHHHHHHHHh---hcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHH
Q psy13922         79 VILSAGASDGIKSVLKLL---IEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIGYYLDESKQWGLPISELERSIT  151 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~  151 (509)
                      |++++|+++++..++.++   .++||    +|+++.|.|.+..    ..++..|++++.++.+++ ++.+|++.+++.++
T Consensus        80 v~~~~~~t~~l~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~  154 (397)
T TIGR01976        80 VVFGANATSLTFLLSRAISRRWGPGD----EVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLS  154 (397)
T ss_pred             EEEeCCHHHHHHHHHHHHHhcCCCCC----EEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcC
Confidence            999999999999888776   46777    9999999887643    456778999999988753 35789999999997


Q ss_pred             hhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeE
Q psy13922        152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELA  231 (509)
Q Consensus       152 ~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  231 (509)
                      +     ++++|++++|+||||..++   +++|.++|+++|+++|+|+++...    . ....+...         +.+++
T Consensus       155 ~-----~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~----~-~~~~~~~~---------~~d~~  212 (397)
T TIGR01976       155 P-----RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYAP----H-GLIDVQAT---------GADFL  212 (397)
T ss_pred             C-----CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhcc----c-cCCCHHHc---------CCCEE
Confidence            6     7999999999999999987   889999999999999999997531    1 11222221         12255


Q ss_pred             EEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc
Q psy13922        232 SFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV  311 (509)
Q Consensus       232 ~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (509)
                       +.|++|.+ | +  |+|+++   .++++++.+......+. .+..     +.                 .++.|++...
T Consensus       213 -~~s~~K~~-g-~--~~G~l~---~~~~~~~~l~~~~~~~~-~~~~-----~~-----------------~~~~gt~~~~  261 (397)
T TIGR01976       213 -TCSAYKFF-G-P--HMGILW---GRPELLMNLPPYKLTFS-YDTG-----PE-----------------RFELGTPQYE  261 (397)
T ss_pred             -EEechhhc-C-C--ceEEEE---EcHHHHhhCCCccccCc-cCCC-----cc-----------------hhcCCCCCHH
Confidence             46999988 5 3  589987   68888877654332111 0000     00                 0112222211


Q ss_pred             ccchhhcccC----CCCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC-----CceeEEeecCCCCHH
Q psy13922        312 GQTVMDCVVN----PPQPGEP-SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV-----QGAMYAFPQMKLPAK  381 (509)
Q Consensus       312 ~~~al~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~~g~~~~~~~~~~~~  381 (509)
                      ...++..+++    ......+ ...+.....++.+++..++.+++.+.|+++++++++.+     .++++. +.+.    
T Consensus       262 ~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~----  336 (397)
T TIGR01976       262 LLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVS-FTVH----  336 (397)
T ss_pred             HHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEE-EEeC----
Confidence            2222221111    0000000 00111112566778888889999999998867887654     455443 3332    


Q ss_pred             HHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        382 AIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       382 ~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                              +. +..+ +.+.|+++||.+..|..|.
T Consensus       337 --------~~-~~~~-l~~~L~~~gI~v~~~~~~~  361 (397)
T TIGR01976       337 --------GL-PPQR-VVRRLADQGIDAWAGHFYA  361 (397)
T ss_pred             --------Cc-CHHH-HHHHHHHCCeEEEeCccch
Confidence                    21 1233 4556677899999887665

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.93  E-value=1.2e-23  Score=217.76  Aligned_cols=325  Identities=13%  Similarity=0.084  Sum_probs=210.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      |+.+++++.+++...... ...|....|...+++.+++.+.+.++   .++.|++++ +++++..+++.++++||    .
T Consensus        55 ~~~v~~a~~~~~~~~~~~-~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~-g~~~~~~~l~~~~~~gd----~  125 (385)
T PRK05958         55 HPRLIAAAQQAARRYGAG-SGGSRLVTGNSPAHEALEEELAEWFG---AERALLFSS-GYAANLAVLTALAGKGD----L  125 (385)
T ss_pred             CHHHHHHHHHHHHhcCCC-CCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECc-HHHHHHHHHHHhCCCCC----E
Confidence            578999999998763211 11133333333344444444444434   234455555 55666677788888888    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++.|+|..+...++..|.+++.++.       .|++.+++.++...  .++.++++++++||+|...+   +++|+++
T Consensus       126 V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~--~~~~lvi~~~~~~~~G~~~~---l~~i~~i  193 (385)
T PRK05958        126 IVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWR--AGRALIVTESVFSMDGDLAP---LAELVAL  193 (385)
T ss_pred             EEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhcc--CCCeEEEEEecccCCCCcCC---HHHHHHH
Confidence            999999999999998889999888763       37899999887520  12556666789999998866   8999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |+++|+++|+||+|..+.++..  ....... ..+.   ...++|++.|+||.+ |++|   ||++   .++++++.+.+
T Consensus       194 a~~~~~~li~De~~~~g~~~~~--g~~~~~~-~~~~---~~~~~i~~~s~sK~~-~~~G---g~~~---~~~~~~~~~~~  260 (385)
T PRK05958        194 ARRHGAWLLVDEAHGTGVLGPQ--GRGLAAE-AGLA---GEPDVILVGTLGKAL-GSSG---AAVL---GSETLIDYLIN  260 (385)
T ss_pred             HHHhCCEEEEECcccccccCCC--CCchHHh-hCCC---CCCceEEEEechhhc-ccCC---cEEE---cCHHHHHHHHH
Confidence            9999999999999977554321  1111111 1111   123488899999999 6666   8887   78888888764


Q ss_pred             hhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHH
Q psy13922        267 SISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDS  343 (509)
Q Consensus       267 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (509)
                      ....+   ...+..                                  ..+++..+++          .. +..+.+++.
T Consensus       261 ~~~~~~~~~~~~~~----------------------------------~~aa~~aal~----------~~-~~~~~~~~~  295 (385)
T PRK05958        261 RARPFIFTTALPPA----------------------------------QAAAARAALR----------IL-RREPERRER  295 (385)
T ss_pred             hCccceecCCCCHH----------------------------------HHHHHHHHHH----------HH-hcCHHHHHH
Confidence            33211   112222                                  2222222211          01 111456778


Q ss_pred             HHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccc
Q psy13922        344 LKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH  423 (509)
Q Consensus       344 ~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~  423 (509)
                      +.++++++.+.|+++ ++++.++.+++ +|+.++  ..          .++.++... |.++||.+.++..+...     
T Consensus       296 ~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~~~~~--~~----------~~~~~~~~~-l~~~gI~v~~~~~~~~~-----  355 (385)
T PRK05958        296 LAALIARLRAGLRAL-GFQLMDSQSAI-QPLIVG--DN----------ERALALAAA-LQEQGFWVGAIRPPTVP-----  355 (385)
T ss_pred             HHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeC--CH----------HHHHHHHHH-HHHCCceEecccCCCCC-----
Confidence            888999999999987 77777676665 454443  10          023344444 45679999985533220     


Q ss_pred             cccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHH
Q psy13922        424 FRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREF  500 (509)
Q Consensus       424 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~  500 (509)
                                                                .+..        ++|+++.  ++++++++++++|+++
T Consensus       356 ------------------------------------------~~~~--------~lRis~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        356 ------------------------------------------AGTS--------RLRITLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             ------------------------------------------CCCc--------eEEEEecCCCCHHHHHHHHHHHHhc
Confidence                                                      1222        8999998  7999999999999875

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.93  E-value=4.5e-24  Score=222.49  Aligned_cols=302  Identities=13%  Similarity=0.059  Sum_probs=204.6

Q ss_pred             CCCCCCHHHHHHHHHHHhc-c--cCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDG-C--RGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~-~--~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ++..+++.|++++...+.. .  ...+...|+...+...+++.+++++.+.+|.+  ...|++++ +++++..++.++.+
T Consensus        27 ~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a~~~~l~~l~~  103 (402)
T cd00378          27 SENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQANLAVYFALLE  103 (402)
T ss_pred             cCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHHHHHHHHHhcC
Confidence            5556789999998776532 1  11122336677777888887777776666743  34566565 56899999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHH-----HHhcCCEEEEEecCCC-CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSAS-----LAEFNMEQIGYYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      +||    +|+++.|+|.++...     ++..|.++..++.+.+ .++.+|++.+++.+...    ++++|++++|+||+ 
T Consensus       104 ~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~----~~~~v~~~~~~~~~-  174 (402)
T cd00378         104 PGD----TIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF----KPKLIVAGASAYPR-  174 (402)
T ss_pred             CCC----EEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC----CCCEEEecCcccCC-
Confidence            998    999999999876443     5667887777776543 25789999999999653    78999998888874 


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccC-CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVY-QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                       ..   ++++|+++|+++|+++|+|++| .++.+.+. ...++.           ..+ +++.|+||.+   +|.|+||+
T Consensus       175 -~~---~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~-~~~~~~-----------~~d-v~~~s~sK~l---~G~~gg~i  234 (402)
T cd00378         175 -PI---DFKRFREIADEVGAYLLVDMAHVAGLVAGGV-FPNPLP-----------GAD-VVTTTTHKTL---RGPRGGLI  234 (402)
T ss_pred             -Cc---CHHHHHHHHHhcCCEEEEEccchhhhhhccc-CCCccc-----------CCc-EEEeccccCC---CCCCceEE
Confidence             32   3889999999999999999996 44433321 111111           112 4577999976   68899999


Q ss_pred             eeecCCHHHHHHHHHhhhcc-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        252 EVINLDPGVKAMLHKSISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      +.  .++++++.+.+..... .+.+...                                 ...++..++          
T Consensus       235 ~~--~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------~~~a~~~al----------  269 (402)
T cd00378         235 LT--RKGELAKKINSAVFPGLQGGPHLH---------------------------------VIAAKAVAL----------  269 (402)
T ss_pred             Ee--ccHHHHHHHHHHhCccccCCchHH---------------------------------HHHHHHHHH----------
Confidence            83  4448998887654321 1111110                                 111111111          


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeE
Q psy13922        331 EQFSR-EKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGIC  408 (509)
Q Consensus       331 ~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~  408 (509)
                      ..... +.++.++.+.++++++.+.|.+. |+.+. .+.+++++|++++..          +.  +...+.++|+++||.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~----------~~--~~~~~~~~l~~~gI~  336 (402)
T cd00378         270 KEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPK----------GI--TGKAAEDALEEAGIT  336 (402)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCcc----------CC--CHHHHHHHHHHcCcE
Confidence            11111 35667788899999999999988 88876 467889999877511          11  222356778899999


Q ss_pred             EecCC
Q psy13922        409 IVPGA  413 (509)
Q Consensus       409 v~pg~  413 (509)
                      +.++.
T Consensus       337 v~~~~  341 (402)
T cd00378         337 VNKNT  341 (402)
T ss_pred             EcCCc
Confidence            98744

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.93  E-value=4.2e-24  Score=220.86  Aligned_cols=218  Identities=13%  Similarity=0.136  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh---c-CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI---E-DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~-~gd~  102 (509)
                      ++.+.+++.+++..... ....|+. .-..++.+.+++++    |    .+++++++|+++++..+++.+.   . .+ +
T Consensus        45 ~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~la~~~----g----~~~~~~~~sg~~a~~~a~~~~~~~~~~~~-~  113 (379)
T TIGR00707        45 HPKLVEALKEQLEKLVH-VSNLYYT-EPQEELAEKLVEHS----G----ADRVFFCNSGAEANEAALKLARKYTGDKG-K  113 (379)
T ss_pred             CHHHHHHHHHHHhhccc-cccccCC-HHHHHHHHHHHhhC----C----CCEEEEeCCcHHHHHHHHHHHHHHhhccC-C
Confidence            58999999998887321 1122432 22244555555444    4    2499999999999999998763   2 10 0


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEE----EecCCCCCCC--CCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-CC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIG----YYLDESKQWG--LPISELERSITEARKHCNPRAIVIINPGNPTGQ-VL  175 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~--~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-~~  175 (509)
                      ++++|+++.|+|+++...+...+.....    .+...+..+.  .|++.+++.+.+     ++++|+++.++||+|. .+
T Consensus       114 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~v~~~p~~~~~g~~~~  188 (379)
T TIGR00707       114 EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD-----ETAAVIVEPIQGEGGVNPA  188 (379)
T ss_pred             CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh-----CeeEEEEEccccCCCCccC
Confidence            1239999999999887776655543321    2222221111  189999998876     6899999777788886 47


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      +.+++++|.++|+++|+++|+||+|.+|.+.+  .+.++...  ...     .+++   +|||.+ | +|+|+||++   
T Consensus       189 ~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g--~~~~~~~~--~~~-----~d~~---t~sK~~-~-~G~riG~~~---  251 (379)
T TIGR00707       189 SAEFLKALREICKDKDALLIFDEVQTGIGRTG--KFFAYEHY--GIE-----PDII---TLAKGL-G-GGVPIGATL---  251 (379)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCccc--hhhhHHhc--CCC-----CCEE---EEcccc-c-CCcccEEEE---
Confidence            99999999999999999999999999876543  12121111  111     1233   689999 6 999999998   


Q ss_pred             CCHHHHHHHHHhhh-cccCcchh
Q psy13922        256 LDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       256 ~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      +++++++.+..... ...+.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~  274 (379)
T TIGR00707       252 AKEEVAEAFTPGDHGSTFGGNPL  274 (379)
T ss_pred             EcHHHHhhhcCCCCCCCCCCCHH
Confidence            78899988875422 22334555

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07049 methionine gamma-lyase; Validated

Probab=99.93  E-value=6.2e-23  Score=214.24  Aligned_cols=231  Identities=16%  Similarity=0.175  Sum_probs=172.2

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----  121 (509)
                      +++|+.+.. ..|++.+|++.+        .+++++++|+++++..++.+++++||    +|+++.|+|..+...+    
T Consensus        77 y~R~~~Pt~-~~Le~~lA~leg--------~~~~iv~~sG~~Ai~~~l~al~~~Gd----~Vv~~~p~Y~~~~~~~~~~l  143 (427)
T PRK07049         77 YSRFNHPNS-EIVEDRLAVYEG--------AESAALFSSGMSAIATTLLAFVRPGD----VILHSQPLYGGTETLLAKTF  143 (427)
T ss_pred             ccCCCCcCH-HHHHHHHHHHhC--------CCcEEEEccHHHHHHHHHHHHhCCCC----EEEEcCCCcccHHHHHHHHH
Confidence            566776543 789999999883        45788899999999999999999999    9999999999987664    


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH---CCcEEEEcc
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR---EKLFLFADE  198 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~---~~i~lI~De  198 (509)
                      ...|++++.++.      ..|.+.+++.+.+.....++++|++++|+||||.+++.+++.+|++.|+.   +++++|+|+
T Consensus       144 ~~~Gi~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDe  217 (427)
T PRK07049        144 RNFGVGAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDN  217 (427)
T ss_pred             HhcCcEEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEEC
Confidence            567998887762      34678888777642211278999999999999999998888888888654   789999999


Q ss_pred             cCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcc-cCcchh
Q psy13922        199 VYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAM-LCPTVL  277 (509)
Q Consensus       199 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~-~~~~~~  277 (509)
                      +|..+...     .++ .          ....|+++|+||.++|.+|+|+||++   +++++++.+...+..+ .+.+.+
T Consensus       218 ty~~~~~~-----~pl-~----------~g~divv~S~SK~~gG~~glr~G~vv---~~~~l~~~l~~~~~~~g~~ls~~  278 (427)
T PRK07049        218 TLLGPVFQ-----KPL-E----------HGADLSVYSLTKYVGGHSDLVAGAVL---GRKALIRQVRALRSAIGTQLDPH  278 (427)
T ss_pred             CccccccC-----Ccc-c----------cCCCEEEEcCceeecCCCCcEEEEEE---CCHHHHHHHHHHHHhcCCCCCHH
Confidence            98764321     111 1          11257788999999558999999998   7899999998776633 234444


Q ss_pred             hhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13922        278 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS  357 (509)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  357 (509)
                                                        .+.++...++              .+....+...+++..+.+.|++
T Consensus       279 ----------------------------------~a~l~~r~L~--------------tl~~R~~~~~~~a~~la~~L~~  310 (427)
T PRK07049        279 ----------------------------------SCWMLGRSLE--------------TLVLRMERANRNARAVAEFLRD  310 (427)
T ss_pred             ----------------------------------HHHHHHcCCC--------------hHHHHHHHHHHHHHHHHHHHHh
Confidence                                              2222222222              1344455568889999999999


Q ss_pred             CCCCe
Q psy13922        358 IEGMS  362 (509)
Q Consensus       358 ~~g~~  362 (509)
                      .|++.
T Consensus       311 ~p~V~  315 (427)
T PRK07049        311 HPKVE  315 (427)
T ss_pred             CCCcc
Confidence            87765

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.93  E-value=3.5e-23  Score=214.10  Aligned_cols=349  Identities=16%  Similarity=0.185  Sum_probs=220.8

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCC--C--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYT--D--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~--~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ....|+.+++++.+.+....+.....+.  +  ..-..++|+.+++++    |  .++++|++|+|++++++.++..+..
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~t~~~t~a~~~al~~~~~   81 (379)
T TIGR03402         8 TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL----G--AEPDEIIFTSGGTESDNTAIKSALA   81 (379)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            4456889999998888752111111011  0  112345666777766    4  4578999999999999999988752


Q ss_pred             ---CCCCCCCeEEEcCCCChhHHHH---HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         99 ---DVDGKKPGVLIPIPQYPLYSAS---LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        99 ---~gd~~~~~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                         +++    .|+++...|+.+...   ++..|.+++.++.+++  +.+|++.+++.+++     +++++++++++||||
T Consensus        82 ~~~~~~----~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--g~~~~~~l~~~i~~-----~~~lv~i~~~~n~tG  150 (379)
T TIGR03402        82 AQPEKR----HIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEE--GRLDLEELRAAITD-----DTALVSVMWANNETG  150 (379)
T ss_pred             hcCCCC----eEEEcccccHHHHHHHHHHHHcCCEEEEEccCCC--CcCCHHHHHHhcCC-----CcEEEEEEcccCCee
Confidence               344    899988888776543   4456999999988654  46899999999976     799999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ..++   +++|.++|+++|+++++|++++...     ....+..    .     ..+++++ |.+|.+ |++|  +|++.
T Consensus       151 ~~~~---~~~I~~l~~~~g~~vivD~~~~~g~-----~~~~~~~----~-----~~D~~~~-s~~K~~-gp~G--~g~l~  209 (379)
T TIGR03402       151 TIFP---IEEIGEIAKERGALFHTDAVQAVGK-----IPIDLKE----M-----NIDMLSL-SGHKLH-GPKG--VGALY  209 (379)
T ss_pred             eccc---HHHHHHHHHHcCCEEEEECcccccc-----cccCccc----C-----CCCEEEE-cHHHcC-CCCc--eEEEE
Confidence            9999   6789999999999999999997521     1112211    1     2224444 778977 7777  55554


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      +  .+ +..  +.....   +...      .                 .....++.+..+..++..+++          .
T Consensus       210 v--~~-~~~--~~p~~~---g~~~------~-----------------~~~~~gt~~~~~~~~l~~al~----------~  248 (379)
T TIGR03402       210 I--RK-GTR--FRPLLR---GGHQ------E-----------------RGRRAGTENVPGIVGLGKAAE----------L  248 (379)
T ss_pred             E--CC-CCC--CCCccc---CCcc------C-----------------CCcCCCCccHHHHHHHHHHHH----------H
Confidence            2  22 211  111000   0000      0                 000111112223444444432          2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCCCeeccCC-----ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQ-----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                      ..++++...++.+++++.+.+.|.+ ++++.+..+.     +.+.+|+  +            +. +..+ +...|+++|
T Consensus       249 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~-~~~~-~~~~l~~~g  312 (379)
T TIGR03402       249 ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISF--E------------YI-EGEA-ILLLLDMEG  312 (379)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEe--c------------CC-CHHH-HHHhhccCC
Confidence            3345777788899999999999985 8888776432     2233343  2            11 1233 345678899


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |.+.+|..|...                               .......++.+|.......+        .+|+|+.  
T Consensus       313 I~v~~g~~c~~~-------------------------------~~~~~~~~~~lg~~~~~~~~--------~vR~S~~~~  353 (379)
T TIGR03402       313 ICASSGSACTSG-------------------------------SLEPSHVLRAMGVPHTAAHG--------SIRFSLSRY  353 (379)
T ss_pred             EEEEchhhcCCC-------------------------------CCCcCHHHHHcCCChhhcCc--------eEEEEcCCC
Confidence            999999887662                               11111223333321111112        8999999  


Q ss_pred             cChHHHHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      ++.+||+.+++.|++++++++
T Consensus       354 ~t~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       354 NTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999988755

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.93  E-value=8.6e-23  Score=209.81  Aligned_cols=211  Identities=14%  Similarity=0.138  Sum_probs=158.1

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCc-c-cCC--CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSV-G-SYT--DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~-~-~Y~--~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      -++.+.+++++.+.-....+... . ...  ...-..++++.+++++    |  +  +++++|+|+++++..++.+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~--~~i~~~~g~t~al~~~l~~~~~~   82 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----G--M--DEARVTPGAREGKFAVMHSLCEK   82 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc----C--C--ceEEEeCCHHHHHHHHHHHhcCC
Confidence            34567777777777643221111 1 011  1122467888888887    4  2  78999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc--CCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH--CNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~--~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ||    .|+++.++|.+....++..|++++.++.+.++.|.+|++.+++.+++..+.  +++++|++++|+||||...+ 
T Consensus        83 gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~-  157 (361)
T cd06452          83 GD----WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD-  157 (361)
T ss_pred             CC----EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc-
Confidence            88    999999998888778899999999999886656789999999998742211  26899999999999998855 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|+++|+++|+++|+|++|.....    + .+...+    +      ..++++|+||.+ | ++.|+||++   .+
T Consensus       158 --~~~i~~~~~~~~~~vivD~a~~~g~~----~-~~~~~~----~------~d~~~~s~~K~l-~-~~~~~G~l~---~~  215 (361)
T cd06452         158 --AKKIAKVCHEYGVPLLLNGAYTVGRM----P-VSGKEL----G------ADFIVGSGHKSM-A-ASAPIGVLA---TT  215 (361)
T ss_pred             --HHHHHHHHHHcCCeEEEECCcccCCc----C-CCHHHc----C------CCEEEecCCccc-c-CCCCeEEEE---EC
Confidence              88999999999999999999975221    1 222221    1      145677999999 5 556999998   68


Q ss_pred             HHHHHHHHHhhh
Q psy13922        258 PGVKAMLHKSIS  269 (509)
Q Consensus       258 ~~~~~~l~~~~~  269 (509)
                      +++++++.+...
T Consensus       216 ~~~~~~l~~~~~  227 (361)
T cd06452         216 EEWADIVFRTSQ  227 (361)
T ss_pred             HHHHHHHhcccc
Confidence            889988866543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.92  E-value=2.5e-23  Score=214.57  Aligned_cols=319  Identities=13%  Similarity=0.149  Sum_probs=203.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC---cccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS---VGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~---~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      +.+.+|+.+++++.+.+.......   ...+++  .....++|+.+++++    |.+ ++++|++|+|++++++.++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~a~~~~~~~l   81 (373)
T cd06453           7 ATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----NAP-SPDEIIFTRNTTEAINLVAYGL   81 (373)
T ss_pred             cccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCCHHHHHHHHHHHh
Confidence            445668899999988886532110   111111  234557788888887    321 3679999999999999999999


Q ss_pred             hc---CCCCCCCeEEEcCCCChhH----HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         97 IE---DVDGKKPGVLIPIPQYPLY----SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        97 ~~---~gd~~~~~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      ..   +|+    +|+++.++|.+.    ...++..|++++.++.+.+  +.+|++.+++.+.+     ++++|++++|+|
T Consensus        82 ~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~-----~~~~v~~~~~~~  150 (373)
T cd06453          82 GRANKPGD----EIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDD--GQLDLEALEKLLTE-----RTKLVAVTHVSN  150 (373)
T ss_pred             hhcCCCCC----EEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCC--CCcCHHHHHHHhcC-----CceEEEEeCccc
Confidence            87   677    999999999874    3344577999999998743  57899999999987     799999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      |||...+   +++|+++|+++|++||+|++|......     ..+..    .     ..++++ .|++|.+ |.  .++|
T Consensus       151 ~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~~----~-----~~d~~~-~s~~K~~-~~--~g~g  209 (373)
T cd06453         151 VLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMP-----VDVQD----L-----GCDFLA-FSGHKML-GP--TGIG  209 (373)
T ss_pred             ccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCcee-----eeccc----c-----CCCEEE-ecccccc-CC--CCcE
Confidence            9999988   788999999999999999998753211     11111    1     122444 4888999 43  5689


Q ss_pred             EEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc
Q psy13922        250 YSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS  329 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  329 (509)
                      +++   .++++++.+.............       .++...|....     -.++.+++......++..++.        
T Consensus       210 ~~~---~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~-----~~~~~~t~~~~~~~al~~al~--------  266 (373)
T cd06453         210 VLY---GKEELLEEMPPYGGGGEMIEEV-------SFEETTYADLP-----HKFEAGTPNIAGAIGLGAAID--------  266 (373)
T ss_pred             EEE---EchHHhhcCCCeecCCCccccc-------cccccccCCCc-----cccCCCCCCHHHHHHHHHHHH--------
Confidence            887   6788888776543211111100       00000110000     001122222223333333221        


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC---CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        330 YEQFS-REKQSVLDSLKQRAKMVADTFNSIEGMSCNPV---QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       330 ~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                        ... ..++.+++..+++++++.+.|.++++++++.+   .++ ++++.+.            +. +..+ +.+.|.++
T Consensus       267 --~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~------------~~-~~~~-i~~~l~~~  329 (373)
T cd06453         267 --YLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAG-VVSFNLE------------GI-HPHD-VATILDQY  329 (373)
T ss_pred             --HHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCC-eEEEEEC------------Cc-CHHH-HHHHHHHC
Confidence              111 12566778888889999999999988887632   333 4444443            11 2233 45566778


Q ss_pred             CeEEecCCCCCC
Q psy13922        406 GICIVPGAGFGQ  417 (509)
Q Consensus       406 gI~v~pg~~f~~  417 (509)
                      ||.+.+|..|..
T Consensus       330 gi~i~~g~~~~~  341 (373)
T cd06453         330 GIAVRAGHHCAQ  341 (373)
T ss_pred             CEEeccCccchh
Confidence            999988775543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07179 hypothetical protein; Provisional

Probab=99.92  E-value=2.6e-22  Score=209.55  Aligned_cols=325  Identities=14%  Similarity=0.133  Sum_probs=216.3

Q ss_pred             CHHHHHHHHHHHhcccCCC--cccC-CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQS--VGSY-TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~--~~~Y-~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .|.+++++.+++.+.....  ...| .......+|++.+++++    |    .+.+++|+|+++|+..+++++..+|+  
T Consensus        70 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~sG~~An~~~l~~l~~~g~--  139 (407)
T PRK07179         70 HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----G----FESCLLCQSGWAANVGLLQTIADPNT--  139 (407)
T ss_pred             CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHhCCCCC--
Confidence            4789999999887642221  1112 22223467888888887    3    34678899999999999999999888  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                        .|++..+.|......++..|++++.++       ..|++.|++.+++.    ++++|++++++||||.+++   +++|
T Consensus       140 --~v~~~~~~h~s~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~----~~~lV~v~~v~n~tG~i~p---l~~I  203 (407)
T PRK07179        140 --PVYIDFFAHMSLWEGVRAAGAQAHPFR-------HNDVDHLRRQIERH----GPGIIVVDSVYSTTGTIAP---LADI  203 (407)
T ss_pred             --EEEEECCcCHHHHHHHHHCCCeEEEec-------CCCHHHHHHHHHhc----CCeEEEECCCCCCCCcccc---HHHH
Confidence              999999999988888888898877654       24899999999763    4788888999999999999   7889


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      .++|+++|+++|+||+|....++.  ...++..   ..+.. +.. .+++.|+||.+ | +  |+||++   .++++++.
T Consensus       204 ~~l~~~~~~~livDea~~~g~~g~--~g~g~~~---~~~~~-~~v-di~~~S~sK~~-g-~--~~G~l~---~~~~~~~~  269 (407)
T PRK07179        204 VDIAEEFGCVLVVDESHSLGTHGP--QGAGLVA---ELGLT-SRV-HFITASLAKAF-A-G--RAGIIT---CPRELAEY  269 (407)
T ss_pred             HHHHHHcCCEEEEECcccccCcCC--CCCchHH---hcCCC-CCC-CEEEeechHhh-h-c--cCeEEE---eCHHHHHH
Confidence            999999999999999998644321  1122221   11110 011 25567999998 4 2  689998   68888887


Q ss_pred             HHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        264 LHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       264 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      +......  +.+.....                                 ..+++..+++           ..+.....+
T Consensus       270 ~~~~~~~~~~~~t~~~~---------------------------------~~aa~~aal~-----------~~~~~~~~~  305 (407)
T PRK07179        270 VPFVSYPAIFSSTLLPH---------------------------------EIAGLEATLE-----------VIESADDRR  305 (407)
T ss_pred             HHHhCcCeeeCCCCCHH---------------------------------HHHHHHHHHH-----------HHhcCHHHH
Confidence            7654321  11111110                                 1111111111           112234567


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCc
Q psy13922        342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGT  421 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~  421 (509)
                      +.++++++++.+.|.++ |+++. +.+. ++++.+....             ....+...|.++||.+.   .|..    
T Consensus       306 ~~l~~~~~~l~~~L~~~-g~~v~-~~~~-i~~l~~~~~~-------------~~~~~~~~L~~~GI~~~---~~~~----  362 (407)
T PRK07179        306 ARLHANARFLREGLSEL-GYNIR-SESQ-IIALETGSER-------------NTEVLRDALEERNVFGA---VFCA----  362 (407)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCCC-CCCC-EEEEEeCCHH-------------HHHHHHHHHHHCCceEe---eecC----
Confidence            88999999999999988 77766 4444 4454443111             12224566777899743   2222    


Q ss_pred             cccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHH
Q psy13922        422 YHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFRE  499 (509)
Q Consensus       422 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~  499 (509)
                                                                  ++.    ..+..++||++.  +++++++++++.|++
T Consensus       363 --------------------------------------------p~~----~~~~~~lRis~~~~~t~edi~~~~~~l~~  394 (407)
T PRK07179        363 --------------------------------------------PAT----PKNRNLIRLSLNADLTASDLDRVLEVCRE  394 (407)
T ss_pred             --------------------------------------------CCC----CCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence                                                        110    011228999998  799999999999999


Q ss_pred             HHHHHHh
Q psy13922        500 FHEEFLA  506 (509)
Q Consensus       500 ~~~~~~~  506 (509)
                      +++++.-
T Consensus       395 ~~~~~~~  401 (407)
T PRK07179        395 ARDEVDL  401 (407)
T ss_pred             HHHhhCC
Confidence            9887543

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.92  E-value=1.6e-23  Score=217.99  Aligned_cols=323  Identities=10%  Similarity=0.114  Sum_probs=208.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.+.+++.+++++.... .+.|+...+ .++.+.+++++    +.. .++++++++|+++++..+++.++.+|+   +.
T Consensus        61 ~p~v~~ai~~~~~~~~~~-~~~~~~~~~-~~la~~l~~~~----~~~-~~~~v~~~~sgsea~~~al~~~~~~g~---~~  130 (398)
T PRK03244         61 HPAVVEAVTRQLATLGHV-SNLFATEPQ-IALAERLVELL----GAP-EGGRVFFCNSGAEANEAAFKLARLTGR---TK  130 (398)
T ss_pred             CHHHHHHHHHHHHhccCc-cCccCCHHH-HHHHHHHHHhC----CCC-CCCEEEEeCchHHHHHHHHHHHHHHCC---Ce
Confidence            588999999999874322 234765444 44555555543    422 357999999999999999998877652   36


Q ss_pred             EEEcCCCChhHHHHHHhc-CCEEEEEecC---CC-CCC-CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH-HH
Q psy13922        107 VLIPIPQYPLYSASLAEF-NMEQIGYYLD---ES-KQW-GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK-EN  179 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~---~~-~~~-~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~-~~  179 (509)
                      |+..+++|+++....... |......+..   .. ..+ ..|++.+++.+.+     ++++|+++.++||+|.++++ ++
T Consensus       131 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~aviiep~~~~~G~~~~~~~~  205 (398)
T PRK03244        131 IVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDD-----DTAAVFLEPIQGEAGVVPPPAGY  205 (398)
T ss_pred             EEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcC-----CeEEEEEecccCCCCCcCCCHHH
Confidence            888888999876544432 2211111100   00 000 1378999988864     79999999999999998865 45


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|.++|++||+++|+||+|.+|...+.  ...+. . .++.+     ++   .+|||.+ | +|+|+||++   .+++
T Consensus       206 l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~~-~-~~~~p-----Di---~t~sK~l-~-~G~~ig~~~---~~~~  268 (398)
T PRK03244        206 LAAAREITDRHGALLVLDEVQTGIGRTGA--WFAHQ-H-DGVTP-----DV---VTLAKGL-G-GGLPIGACL---AFGP  268 (398)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCcccch--HHhhh-h-hCCCC-----CE---EEEchhh-h-CCcccEEEE---EcHH
Confidence            99999999999999999999998766431  11111 1 12211     23   3779999 5 899999998   7888


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+..... ...+.+.+                                  .+++....++           ..+ .+
T Consensus       269 ~~~~~~~~~~~~t~~~~~~----------------------------------~~aaa~a~l~-----------~~~-~~  302 (398)
T PRK03244        269 AADLLTPGLHGSTFGGNPV----------------------------------ACAAALAVLD-----------TIA-SE  302 (398)
T ss_pred             HHhhccCCCCcCCCCCCHH----------------------------------HHHHHHHHHH-----------HHH-hc
Confidence            8888764322 23344455                                  2333222211           000 12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCee--ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSC--NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ...+.++++.+.+.+.|+++ +...  .....|.++|+.++.+             .... +...+.++||.+.|..   
T Consensus       303 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~-------------~~~~-~~~~l~~~Gv~~~~~~---  364 (398)
T PRK03244        303 GLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAP-------------VAKA-VEAAAREAGFLVNAVA---  364 (398)
T ss_pred             cHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEecc-------------HHHH-HHHHHHHCCeEEeecC---
Confidence            34556666677778888775 3321  1223677788776411             1223 3455667899998621   


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAML  494 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~  494 (509)
                                                                       +.          .+|+++.  .++++|++++
T Consensus       365 -------------------------------------------------~~----------~iR~~p~~~~t~~~i~~~~  385 (398)
T PRK03244        365 -------------------------------------------------PD----------VIRLAPPLIITDAQVDAFV  385 (398)
T ss_pred             -------------------------------------------------CC----------EEEEECCCcCCHHHHHHHH
Confidence                                                             11          7999955  7899999999


Q ss_pred             HHHHHHHHHH
Q psy13922        495 EKFREFHEEF  504 (509)
Q Consensus       495 ~~l~~~~~~~  504 (509)
                      ++|.+++.+.
T Consensus       386 ~~l~~~l~~~  395 (398)
T PRK03244        386 AALPAILDAA  395 (398)
T ss_pred             HHHHHHHHhc
Confidence            9999999764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.92  E-value=1.6e-22  Score=206.82  Aligned_cols=338  Identities=11%  Similarity=0.100  Sum_probs=211.3

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCC
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG  102 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~  102 (509)
                      +-..++.+.+++...+..    ....|.  .-...+|+.+++++    |.+-+...|++++|+++++..++..+..+++ 
T Consensus         7 p~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~la~~~----~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~-   75 (355)
T TIGR03301         7 PLSTSATVRDAMLVDWCH----WDSEFN--DVTDQVRDRLLALA----GGDDNHTCVLLQGSGTFAVEATIGSLVPRDG-   75 (355)
T ss_pred             CCCCCHHHHHHhhhhccC----CCHHHH--HHHHHHHHHHHHHh----cCCCCCcEEEEeCCcHHHHHHHHHhccCCCC-
Confidence            444677888887662211    112243  33466777777777    4332223688899999999999999988776 


Q ss_pred             CCCeEEEcCCC-Chh-HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        103 KKPGVLIPIPQ-YPL-YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       103 ~~~~Vlv~~p~-y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                         .+++..+. |.. +...++..|.+++.++.+++  +.+|++.+++.+++.   ++++++++++++||||...+   +
T Consensus        76 ---~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~--~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~~G~~~~---~  144 (355)
T TIGR03301        76 ---KLLVLINGAYGERLAKICEYLGIPHTDLNFSEY--EPPDLNRIEEALAAD---PDITHVATVHHETTTGILNP---L  144 (355)
T ss_pred             ---eEEEECCCchhhHHHHHHHHcCCceEEEecCCC--CCCCHHHHHHHHHhC---CCceEEEEEecCCcccchhH---H
Confidence               76665554 443 45677889999999987643  478999999998752   14667778899999999977   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|+++|+++++++|+|++++...     ...++...         +. .+++.|++|.+.|++|  +||++   .++++
T Consensus       145 ~~i~~l~~~~~~~livD~~~s~g~-----~~~~~~~~---------~~-d~~~~s~~K~l~~~~G--~g~~~---~~~~~  204 (355)
T TIGR03301       145 EAIAKVARSHGAVLIVDAMSSFGA-----IPIDIEEL---------DV-DALIASANKCLEGVPG--FGFVI---ARRDL  204 (355)
T ss_pred             HHHHHHHHHcCCEEEEEeccccCC-----cccchhhc---------Cc-cEEEecCCcccccCCc--eeEEE---ECHHH
Confidence            899999999999999998776421     11222221         11 3557899998745556  69998   68888


Q ss_pred             HHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHh-hhcccCcccccchhhcccCCCCCCCCchHHHHH--HH
Q psy13922        261 KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAV-LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR--EK  337 (509)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~--~~  337 (509)
                      ++.+......+. .+....                .++.... ....+.....+.++..++.          ...+  .+
T Consensus       205 ~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~g~~  257 (355)
T TIGR03301       205 LEASAGNARSLY-LDLYDQ----------------WAYMEKTGKWRFTPPTHTVYAFAQALE----------ELEAEGGV  257 (355)
T ss_pred             HHHhhCCCCCce-eeHHHH----------------HHHhhhcCCCCCCCcHHHHHHHHHHHH----------HHHHcccH
Confidence            887752111000 000000                0000000 0000011112233332221          1111  14


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccC---CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPV---QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG  414 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  414 (509)
                      ++.++.++++++++.+.|+++ |+++..+   .+++++|+.++  ..        ...+..+ +...|.++||.+.||..
T Consensus       258 ~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~-~~~~l~~~gi~i~~~~~  325 (355)
T TIGR03301       258 PARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYP--DD--------PDFDFDD-FYQELKERGFVIYPGKL  325 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECC--CC--------CcchHHH-HHHHHHHCCEEEECCcc
Confidence            667778888999999999887 7775432   34566776554  10        0001223 45667778999998653


Q ss_pred             CCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHH
Q psy13922        415 FGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKA  492 (509)
Q Consensus       415 f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~  492 (509)
                      +.                                                 .  +        ++|+++.  ++++++++
T Consensus       326 ~~-------------------------------------------------~--~--------~iRis~~~~~~~~~i~~  346 (355)
T TIGR03301       326 TL-------------------------------------------------A--D--------TFRIGTIGEIDAADIER  346 (355)
T ss_pred             cc-------------------------------------------------c--c--------EEEEecCCCCCHHHHHH
Confidence            21                                                 1  2        8999975  69999999


Q ss_pred             HHHHHHHH
Q psy13922        493 MLEKFREF  500 (509)
Q Consensus       493 ~~~~l~~~  500 (509)
                      +++.|+++
T Consensus       347 ~~~~l~~~  354 (355)
T TIGR03301       347 LLEAIKDA  354 (355)
T ss_pred             HHHHHHhh
Confidence            99999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.92  E-value=3.4e-22  Score=208.74  Aligned_cols=328  Identities=14%  Similarity=0.114  Sum_probs=211.7

Q ss_pred             CHHHHHHHHHHHhcccCCCc---ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSV---GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~---~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd  101 (509)
                      +|.+++++.++++....+..   ..|++.....+|++.+++++    |   .++.+++++| +++...++..+..  +++
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g---~~~~~~~~sG-~~an~~ai~~l~~~~~~~  133 (407)
T PRK09064         62 HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G---KEAALVFTSG-YVSNDATLSTLAKLIPDC  133 (407)
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C---CCcEEEECcH-HHHHHHHHHHHhCCCCCC
Confidence            57899999998887432211   11334444566777777776    3   2345555555 5677777777654  444


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+.....|......+...+.++..++.       .|++.+++.++... ..++++|++++++||+|.+.+   ++
T Consensus       134 ----~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~-~~~~~~v~~~~v~s~~G~~~~---l~  198 (407)
T PRK09064        134 ----VIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAAD-PDRPKLIAFESVYSMDGDIAP---IA  198 (407)
T ss_pred             ----EEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhcc-CCCCeEEEEeCCCCCCccccC---HH
Confidence                5666666677776777777887765542       37888888886421 126889999999999999987   88


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|+++|+++|+||+|+...++..  ...+... .++.    ....++++||||.| |++|   ||++   ++++++
T Consensus       199 ~i~~l~~~~~~~livDEa~~~G~~g~~--g~g~~~~-~~~~----~~~div~~t~sKa~-g~~G---G~~~---~~~~~~  264 (407)
T PRK09064        199 EICDLADKYNALTYLDEVHAVGMYGPR--GGGIAER-DGLM----DRIDIIEGTLAKAF-GVMG---GYIA---GSAALV  264 (407)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCC--CCChHHh-cCCC----CCCeEEEEecchhh-hccC---ceEe---cCHHHH
Confidence            999999999999999999984433321  1222221 1111    11157788999999 7777   8987   788999


Q ss_pred             HHHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......+   .+.+..                                  .+++....++           +.+...
T Consensus       265 ~~l~~~~~~~~~t~~~~~~----------------------------------~~~aa~~al~-----------~~~~~~  299 (407)
T PRK09064        265 DAVRSYAPGFIFTTSLPPA----------------------------------IAAAALASIR-----------HLKESN  299 (407)
T ss_pred             HHHHHhCccccccCcCCHH----------------------------------HHHHHHHHHH-----------HHhcCH
Confidence            9887654322   122222                                  1222111111           111123


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ..++.++++++++.+.|+++ |+.+.++.++++ ++.+..+.            ....+...+++++||.+++......+
T Consensus       300 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~iv-~i~~~~~~------------~~~~l~~~L~~~~gi~v~~~~~p~~~  365 (407)
T PRK09064        300 EERERHQERAAKLKAALDAA-GIPVMPNESHIV-PVMVGDPE------------KCKKASDMLLEEHGIYVQPINYPTVP  365 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEE-EEEeCCHH------------HHHHHHHHHHHhCCEEEeeECCCCCC
Confidence            34677888899999999987 787777666654 43343111            13344555667789999985533221


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+..        ++|+++.  +++++++.+++.
T Consensus       366 -----------------------------------------------~~~~--------~lRis~~~~~t~edi~~l~~~  390 (407)
T PRK09064        366 -----------------------------------------------RGTE--------RLRITPTPFHTDEMIDHLVEA  390 (407)
T ss_pred             -----------------------------------------------CCCc--------eEEEEeCCCCCHHHHHHHHHH
Confidence                                                           1222        8999987  899999999999


Q ss_pred             HHHHHHHHH
Q psy13922        497 FREFHEEFL  505 (509)
Q Consensus       497 l~~~~~~~~  505 (509)
                      |+++++++.
T Consensus       391 l~~~~~~~~  399 (407)
T PRK09064        391 LVEVWARLG  399 (407)
T ss_pred             HHHHHHHcC
Confidence            999887654

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.92  E-value=2.9e-22  Score=208.89  Aligned_cols=327  Identities=13%  Similarity=0.105  Sum_probs=211.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcc---cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG---SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~---~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd  101 (509)
                      +|.+++++.+++++...+...   .|+......+|++.+++++    |    .+..++++++++++..++..+..  +++
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~----g----~~~~l~~~sG~~an~~ai~~l~~~~~~~  132 (402)
T TIGR01821        61 HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH----G----KESALVFTSGYVANDATLATLAKIIPGC  132 (402)
T ss_pred             CHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh----C----CCeEEEECchHHHHHHHHHHhhCCCCCC
Confidence            578999999999884322111   1233333466777777777    3    13455555557888888888865  444


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+.....|......+...|.++..++.       .|++.+++.++... ..++++|++++|+||+|.+.+   ++
T Consensus       133 ----~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~-~~~~~~v~~e~~~~~~G~~~~---l~  197 (402)
T TIGR01821       133 ----VIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVD-PNRPKIIAFESVYSMDGDIAP---IE  197 (402)
T ss_pred             ----EEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhcc-CCCCeEEEEcCCCCCCCCccC---HH
Confidence                5666656676677777778887765542       26788888886421 125789999999999999988   89


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|+++|+++|+||+|....++..  ...... ..+..    ....++++||||.+ |++|   ||++   ++++++
T Consensus       198 ~i~~l~~~~~~~livDea~~~G~~g~~--g~g~~~-~~~~~----~~~div~~t~sKa~-g~~G---G~i~---~~~~~~  263 (402)
T TIGR01821       198 EICDLADKYGALTYLDEVHAVGLYGPR--GGGIAE-RDGLM----HRIDIIEGTLAKAF-GVVG---GYIA---ASRKLI  263 (402)
T ss_pred             HHHHHHHHcCCEEEEeCcccccccCCC--CCccch-hccCC----CCCeEEEEechhhh-ccCC---ceee---cCHHHH
Confidence            999999999999999999985444321  111111 11110    01146678999999 6777   8887   788999


Q ss_pred             HHHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......+   .+.+..++.+                              +.++++.+.+               ..
T Consensus       264 ~~l~~~~~~~~~t~~~~~~~~aa------------------------------a~aaL~~~~~---------------~~  298 (402)
T TIGR01821       264 DAIRSYAPGFIFTTSLPPAIAAG------------------------------ATASIRHLKE---------------SQ  298 (402)
T ss_pred             HHHHHhCcCceecCcCCHHHHHH------------------------------HHHHHHHhhc---------------CH
Confidence            9887654321   1233321111                              2222222111               23


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      .+++.+.++++++.+.|+++ |+.+.++.++++.+ .+..+.            ....+...+++++||.+.+......+
T Consensus       299 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~~i-~~~~~~------------~a~~~~~~L~~~~Gi~v~~~~~p~~~  364 (402)
T TIGR01821       299 DLRRAHQENVKRLKNLLEAL-GIPVIPNPSHIVPV-IIGDAA------------LCKKVSDLLLNKHGIYVQPINYPTVP  364 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEE-EeCCHH------------HHHHHHHHHHhcCCEEEEeECCCCCC
Confidence            44556677888899999887 78777777766433 333111            12344555667789999985533331


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+.        .++|+++.  +++++++++++.
T Consensus       365 -----------------------------------------------~g~--------~~lRis~~~~~t~edi~~~~~~  389 (402)
T TIGR01821       365 -----------------------------------------------RGT--------ERLRITPTPAHTDKMIDDLVEA  389 (402)
T ss_pred             -----------------------------------------------CCC--------ceEEEEeCCCCCHHHHHHHHHH
Confidence                                                           122        28999986  899999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      |+++++++
T Consensus       390 l~~~~~~~  397 (402)
T TIGR01821       390 LLLVWDRL  397 (402)
T ss_pred             HHHHHHHc
Confidence            99988754

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.91  E-value=3.7e-22  Score=207.75  Aligned_cols=349  Identities=10%  Similarity=0.040  Sum_probs=230.7

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |+..+|+.|++++.+.+.       . |. ..+..++++++++.+.+.+|.+ ..+.+++++|+++++..++..+.++||
T Consensus        16 GP~~~~~~V~~a~~~~~~-------~-~~-~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd   85 (401)
T PLN02409         16 GPVNIPERVLRAMNRPNE-------D-HR-SPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGD   85 (401)
T ss_pred             CCCCCCHHHHHHhcCCCC-------C-CC-CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCC
Confidence            566678888888743221       1 22 3456788888888888888854 234688999999999999999999998


Q ss_pred             CCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          +|+++.+.|.+.  ...++..|++++.++.+.+.  .+|++.+++.++... .+++++|++++++||||.+++.++
T Consensus        86 ----~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~--~~~~~~l~~~l~~~~-~~~~k~v~~~~~~~~tG~~~~~~~  158 (401)
T PLN02409         86 ----KVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ--GADLDILKSKLRQDT-NHKIKAVCVVHNETSTGVTNDLAG  158 (401)
T ss_pred             ----EEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC--CCCHHHHHHHHhhCc-CCCccEEEEEeecccccccCCHHH
Confidence                999999988654  56778889999999987542  579999999998510 016899999999999999999555


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.++++ |+++|+++|+|++++...     ....+...         +.++++. |.+|.+.| | .++||++   .+++
T Consensus       159 i~~l~~-~~~~g~~~vvD~v~s~g~-----~~id~~~~---------~~D~~~~-s~~K~l~~-P-~G~G~l~---~~~~  217 (401)
T PLN02409        159 VRKLLD-CAQHPALLLVDGVSSIGA-----LDFRMDEW---------GVDVALT-GSQKALSL-P-TGLGIVC---ASPK  217 (401)
T ss_pred             HHHHHh-hhccCcEEEEEcccccCC-----cccccccc---------CccEEEE-cCccccCc-C-CCcceeE---ECHH
Confidence            555555 999999999999987421     11111111         1235544 66999943 3 3689998   6888


Q ss_pred             HHHHHHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        260 VKAMLHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       260 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      .++++......  +.+....     ....+...            ....++....+.++..+++        +- ....+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~------------~~~~Tp~~~~~~al~~al~--------~~-~~~G~  271 (401)
T PLN02409        218 ALEASKTAKSPRVFFDWADY-----LKFYKLGT------------YWPYTPSIQLLYGLRAALD--------LI-FEEGL  271 (401)
T ss_pred             HHHHHhcCCCCCeecCHHHH-----HHHHhcCC------------CCCCCccHHHHHHHHHHHH--------HH-HHhhH
Confidence            88887653321  0010000     00000000            0001111113444444433        11 11236


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCC----ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQ----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      ++++++.+++.+++.+.|+.+ |+++..+.    .+...++.++  .         ++. ...+...+++++||.+.+|.
T Consensus       272 e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p--~---------~~~-~~~l~~~l~~~~~i~i~~G~  338 (401)
T PLN02409        272 ENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVP--E---------GID-SAEIVKNAWKKYNLSLGLGL  338 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCC--C---------CCC-HHHHHHHHHHhCCEEEEcCC
Confidence            788899999999999999888 88876432    3344454332  2         222 34556778889999999876


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLK  491 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~  491 (509)
                      +-.                                                  ..+        .||++..  ++.+++.
T Consensus       339 ~~~--------------------------------------------------~~~--------~~Rig~~g~~~~~~~~  360 (401)
T PLN02409        339 NKV--------------------------------------------------AGK--------VFRIGHLGNVNELQLL  360 (401)
T ss_pred             Ccc--------------------------------------------------cCC--------EEEEcCCCCCCHHHHH
Confidence            421                                                  112        8999988  7999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13922        492 AMLEKFREFHEEFL  505 (509)
Q Consensus       492 ~~~~~l~~~~~~~~  505 (509)
                      .++..|.+++.+..
T Consensus       361 ~~~~~~~~~l~~~g  374 (401)
T PLN02409        361 GALAGVEMVLKDVG  374 (401)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887643

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.91  E-value=4.2e-22  Score=204.70  Aligned_cols=237  Identities=17%  Similarity=0.206  Sum_probs=169.5

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH----HHH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY----SAS  120 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~----~~~  120 (509)
                      .+++|+.+. ..+|++.++++++        .+..++++|+++++..++ .+.++||    +|+++.|.|.+.    ...
T Consensus        45 ~y~r~~~pt-~~~le~~la~l~g--------~~~~~~~~sG~~ai~~~~-~ll~~Gd----~Vl~~~~~y~~t~~~~~~~  110 (366)
T PRK08247         45 DYSRTGNPT-RGVLEQAIADLEG--------GDQGFACSSGMAAIQLVM-SLFRSGD----ELIVSSDLYGGTYRLFEEH  110 (366)
T ss_pred             cccCCCCch-HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHH-HHhCCCC----EEEEecCCcCcHHHHHHHH
Confidence            455666544 4789999999883        233577888889998776 5778888    999999999874    344


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      ++..|+++..++.       .|++.+++.+++     ++++|++++|+||+|.   ..++++|+++|+++|+++|+|++|
T Consensus       111 ~~~~G~~v~~vd~-------~d~~~l~~~i~~-----~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~  175 (366)
T PRK08247        111 WKKWNVRFVYVNT-------ASLKAIEQAITP-----NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTF  175 (366)
T ss_pred             hhccCceEEEECC-------CCHHHHHHhccc-----CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCC
Confidence            5568999988864       278999999877     7999999999999765   477999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcc-cCcchhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAM-LCPTVLAL  279 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~  279 (509)
                      ......     .++.           ....++++|+||.++|.++++.|+++.  .++++.+.+...+... ...+.+  
T Consensus       176 ~~~~~~-----~p~~-----------~g~di~i~S~sK~~~g~~d~~~G~iv~--~~~~l~~~~~~~~~~~g~~~s~~--  235 (366)
T PRK08247        176 YTPVLQ-----RPLE-----------EGADIVIHSATKYLGGHNDVLAGLVVA--KGQELCERLAYYQNAAGAVLSPF--  235 (366)
T ss_pred             cccccc-----Cchh-----------cCCcEEEeecceeccCCCceeeeEEec--ChHHHHHHHHHHHHhcCCCCChH--
Confidence            542221     1111           112577889999996656789999872  3478888887665522 223333  


Q ss_pred             hccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13922        280 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE  359 (509)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  359 (509)
                                                      .+..+...++              .+....+..+++++.+.+.|++.|
T Consensus       236 --------------------------------~a~l~~~~l~--------------tl~~r~~~~~~~a~~l~~~L~~~p  269 (366)
T PRK08247        236 --------------------------------DSWLLIRGMK--------------TLALRMRQHEENAKAIAAFLNEQP  269 (366)
T ss_pred             --------------------------------HHHHHHhccC--------------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                            1211111111              144455567999999999999998


Q ss_pred             CCee--ccCCceeEEeecCC
Q psy13922        360 GMSC--NPVQGAMYAFPQMK  377 (509)
Q Consensus       360 g~~~--~~~~~g~~~~~~~~  377 (509)
                      ++..  +++.|+++.| .++
T Consensus       270 ~v~~v~~P~~gg~~sf-~~~  288 (366)
T PRK08247        270 GVTDVLYPGRGGMLSF-RLQ  288 (366)
T ss_pred             CeeEEecCCcCcEEEE-EEC
Confidence            8774  4558999988 454

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.91  E-value=2.5e-22  Score=207.38  Aligned_cols=348  Identities=18%  Similarity=0.208  Sum_probs=216.9

Q ss_pred             CCHHHHHHHHHHHhcccCC-CcccCCC----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQ-SVGSYTD----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV  100 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~-~~~~Y~~----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g  100 (509)
                      .|+.+.+++.+.++..... ....|+.    ..+..++|+.++++++    .+ ..++|++|+|+++++..++.++.++|
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~v~~~~g~t~al~~~~~~~~~~g   86 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFN----AP-SSAHVVFTNNATTALNIALKGLLKEG   86 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhC----cC-CCCeEEEeCCHHHHHHHHHHhccCCC
Confidence            4678999998888763211 1222443    2556788888888883    21 33589999999999999999998888


Q ss_pred             CCCCCeEEEcCCCChhHHH----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922        101 DGKKPGVLIPIPQYPLYSA----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +    +|+++.+.|..+..    .++..|.+++.++.+++  +.+|++.+++.+++     +++++++++|+||||..++
T Consensus        87 d----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~~~~-----~~~~v~~~~~~n~tG~~~~  155 (376)
T TIGR01977        87 D----HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNE--GLISPERIKRAIKT-----NTKLIVVSHASNVTGTILP  155 (376)
T ss_pred             C----EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC--CCcCHHHHHHhcCC-----CCeEEEEECCCCCccccCC
Confidence            8    99999999887653    44556999999987643  57899999999976     7999999999999999998


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                         +++|.++|+++|+++|+|++++.....     ..+..    .     ..+++ +.|.+|.+.|..|  .|.+++  .
T Consensus       156 ---~~~i~~l~~~~~~~livD~a~~~g~~~-----~~~~~----~-----~~D~~-~~s~~K~l~~p~g--~g~l~~--~  213 (376)
T TIGR01977       156 ---IEEIGELAQENGIFFILDAAQTAGVIP-----IDMTE----L-----AIDML-AFTGHKGLLGPQG--TGGLYI--R  213 (376)
T ss_pred             ---HHHHHHHHHHcCCEEEEEhhhccCccC-----CCchh----c-----CCCEE-EecccccccCCCC--ceEEEE--c
Confidence               678889999999999999999763321     11111    1     22255 4588998844445  454442  4


Q ss_pred             CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH-
Q psy13922        257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR-  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~-  335 (509)
                      +...   +.............       .+..++.       ....++.++.......++..+++          .+.+ 
T Consensus       214 ~~~~---~~~~~~~~~~~~~~-------~~~~~~~-------~~~r~~~~t~~~~~~~a~~~al~----------~~~~~  266 (376)
T TIGR01977       214 EGIK---LKPLKSGGTGSHSA-------LIDQPSE-------LPDRFESGTLNTPGIAGLNAGIK----------FIEKI  266 (376)
T ss_pred             CCcC---cCceecCCCccccc-------ccccccc-------chhhccCCCCCHHHHHHHHHHHH----------HHHHh
Confidence            4331   22211111000000       0000000       00011122222223333333322          1111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC----ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ..+.++++.+++.+.+.+.|.+++++++..+.    ....+++.++            ++ +...+...+.+++||.+.+
T Consensus       267 g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~------------~~-~~~~~~~~L~~~~gi~v~~  333 (376)
T TIGR01977       267 GIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVE------------GI-DSEEVADILDEKFDIATRT  333 (376)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEEC------------CC-CHHHHHHHHhccCCEEEEc
Confidence            24667788889999999999988888876431    1234444443            22 2334344444445999998


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEK  489 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~  489 (509)
                      |..|...                               ..      +.+|   ....+        .||+++.  ++.++
T Consensus       334 g~~~~~~-------------------------------~~------~~~g---~~~~~--------~iRis~~~~~t~~d  365 (376)
T TIGR01977       334 GLHCAPL-------------------------------AH------KTIG---TFATG--------TIRLSLGYFNTEEE  365 (376)
T ss_pred             ccccchH-------------------------------HH------HHhC---CCCCC--------eEEEecCCCCCHHH
Confidence            8766541                               00      0000   01112        8999988  89999


Q ss_pred             HHHHHHHHHH
Q psy13922        490 LKAMLEKFRE  499 (509)
Q Consensus       490 i~~~~~~l~~  499 (509)
                      ++.++++|++
T Consensus       366 v~~~~~~l~~  375 (376)
T TIGR01977       366 IEKLLEALSE  375 (376)
T ss_pred             HHHHHHHHhh
Confidence            9999998875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.91  E-value=3.6e-22  Score=208.11  Aligned_cols=350  Identities=15%  Similarity=0.119  Sum_probs=219.1

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcc-cC----CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVG-SY----TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~-~Y----~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      ....|+.+++++.+.+......... .+    .......++|+.+++++    |  .++++|++|+|++++++.++.++.
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~~~g~t~a~~~~l~~l~   85 (402)
T TIGR02006        12 TTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI----G--ADSREIVFTSGATESNNLAIKGIA   85 (402)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHH
Confidence            3456889999998887642111111 01    11234566778888877    3  567899999999999999988764


Q ss_pred             ----cCCCCCCCeEEEcCCCChhHHHHH---HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         98 ----EDVDGKKPGVLIPIPQYPLYSASL---AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        98 ----~~gd~~~~~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                          ++|+    .|+++.+.|..+...+   +..|.+++.++.+++  +.+|++.+++.+++     ++++|++++++||
T Consensus        86 ~~~~~~g~----~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~l~~-----~~~lv~v~~~~n~  154 (402)
T TIGR02006        86 HFYKSKGN----HIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSN--GLIDLEELKAAIRD-----DTILVSIMHVNNE  154 (402)
T ss_pred             HhhcCCCC----EEEECCCccHHHHHHHHHHHhcCCEEEEEccCCC--CcCCHHHHHHhcCC-----CCEEEEEECCCcC
Confidence                4566    9999999998866554   456999999988754  47899999999876     7899999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||...+   +++|.++|+++|+++++|++++....     ...+..    .     ..++++ .|.+|.+ |.+|  +|+
T Consensus       155 tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~-----~~~~~~----~-----~~D~~~-~s~~K~~-gp~G--~G~  213 (402)
T TIGR02006       155 IGVIQD---IAAIGEICRERKVFFHVDAAQSVGKI-----PINVNE----L-----KVDLMS-ISGHKIY-GPKG--IGA  213 (402)
T ss_pred             ceeccc---HHHHHHHHHHcCCEEEEEcchhcCCc-----ccCccc----c-----CCCEEE-Eehhhhc-CCCc--eEE
Confidence            999987   88999999999999999999975321     111111    1     222544 4778988 7667  566


Q ss_pred             EeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      +++  .++ ....+....... +..                         ..++.++.......++..+++         
T Consensus       214 l~~--~~~-~~~~~~~~~~g~-~~~-------------------------~~~~~gt~~~~~~~al~~al~---------  255 (402)
T TIGR02006       214 LYV--RRK-PRVRLEALIHGG-GHE-------------------------RGMRSGTLPTHQIVGMGEAFR---------  255 (402)
T ss_pred             EEE--ccC-CCCCCCceecCC-Ccc-------------------------CCccCCCccHHHHHHHHHHHH---------
Confidence            652  322 222221111000 000                         000111111113334433322         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC---c-eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ---G-AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                       ...++++...+..+++++.+.+.|.+++++.+..+.   . +.+ .+.|.            ++ +.+.+ ...+  .+
T Consensus       256 -~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~-~v~f~------------~~-~~~~~-~~~l--~~  317 (402)
T TIGR02006       256 -IAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNL-NVSFN------------YV-EGESL-IMAL--KD  317 (402)
T ss_pred             -HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeE-EEEEe------------Cc-CHHHH-HHhc--CC
Confidence             122346777888999999999999988887765321   1 111 11122            11 12222 2223  48


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |.+..|..|..                               ....+-..++..|+......+        .+|+|+.  
T Consensus       318 i~v~~G~~c~~-------------------------------~~~~~~~~l~~lg~~~~~~~~--------~vR~S~~~~  358 (402)
T TIGR02006       318 LAVSSGSACTS-------------------------------ASLEPSYVLRALGINDELAHS--------SIRFTIGRF  358 (402)
T ss_pred             EEEechhhcCC-------------------------------CCCCccHHHHHcCCChhhcCc--------eEEEEecCC
Confidence            99998887654                               122222233444432222223        8999999  


Q ss_pred             cChHHHHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      ++.++++.+++.|+++++.++
T Consensus       359 ~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       359 TTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999987653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.91  E-value=3.6e-21  Score=199.54  Aligned_cols=209  Identities=12%  Similarity=0.101  Sum_probs=157.4

Q ss_pred             CCCCHHHHHHHHHHHhcccC-CC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRG-QS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~-~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      .++++.+++++.+....... .+   ...+.......++++.+|++++        .+++++|+|+++++..++.+++++
T Consensus        30 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--------~~~~~~~~g~t~a~~~al~~l~~~  101 (387)
T PRK09331         30 GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--------MDEARVTHGAREGKFAVMHSLCKK  101 (387)
T ss_pred             CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhcCC
Confidence            34577899999888854221 11   1112223356889999999883        246889999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc--cCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK--HCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~--~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ||    .|+++.++|.+....++..|++++.++.+.+.++.+|++.+++.+++..+  .+++++|++++|+||||...+ 
T Consensus       102 gd----~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~-  176 (387)
T PRK09331        102 GD----YVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD-  176 (387)
T ss_pred             CC----EEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc-
Confidence            88    99999999998888888999999999984223467999999999975311  126899999999999999866 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|+++|+++|+++|+|++|+....     ..+....    +     . -+++.|++|++ | .+.++||++   .+
T Consensus       177 --l~~I~~la~~~g~~livD~a~~~g~~-----~~~~~~~----g-----~-D~~~~s~~K~l-~-~~~~~G~l~---~~  234 (387)
T PRK09331        177 --AKKVAKVAHEYGIPFLLNGAYTVGRM-----PVDGKKL----G-----A-DFIVGSGHKSM-A-ASAPSGVLA---TT  234 (387)
T ss_pred             --HHHHHHHHHHcCCEEEEECCcccCCc-----CCCHHHc----C-----C-CEEEeeCcccc-c-CCCCEEEEE---EC
Confidence              99999999999999999999985321     1222221    1     1 24466999999 5 556899987   67


Q ss_pred             HHHHHHHHHh
Q psy13922        258 PGVKAMLHKS  267 (509)
Q Consensus       258 ~~~~~~l~~~  267 (509)
                      +++++.+.+.
T Consensus       235 ~~~i~~~~~~  244 (387)
T PRK09331        235 EEYADKVFRT  244 (387)
T ss_pred             HHHHhhcccc
Confidence            8888877553

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.91  E-value=3.4e-22  Score=206.61  Aligned_cols=217  Identities=14%  Similarity=0.126  Sum_probs=147.9

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKK  104 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~  104 (509)
                      -+|.+.+++.++++...   .  ++. ....+++.++++++.+..+    .+.+++++++++|+..+++.... ++   +
T Consensus        46 ~~p~v~~a~~~~~~~~~---~--~~~-~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~~A~~~a~~~~g---~  112 (377)
T PRK02936         46 CHPTVTKAVQEQLDDIW---H--VSN-LFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANEAALKLARKHTG---K  112 (377)
T ss_pred             CCHHHHHHHHHHHHhcc---c--ccc-ccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHHHHHHHHHHhcC---C
Confidence            47889999999998721   1  111 2336789999999976533    35899999999999999986543 33   2


Q ss_pred             CeEEEcCCCChhHHHHHHh-cCCEEE---EEecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC-CCH
Q psy13922        105 PGVLIPIPQYPLYSASLAE-FNMEQI---GYYLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGNPTGQV-LTK  177 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~-~g~~~~---~v~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~-~s~  177 (509)
                      +.|++.++.|++....... .+....   ..+..++..+  ..|++.+++.+.+     ++++|++..+++++|.. .++
T Consensus       113 ~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~ii~e~i~~~~G~~~~~~  187 (377)
T PRK02936        113 SKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-----EVAAVMLEVVQGEGGVIPADP  187 (377)
T ss_pred             CeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC-----CeEEEEEecccCCCCCccCCH
Confidence            3799999999865433222 222111   0111111000  1278999988875     78999999899999975 688


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|.++|++||+++|+||+|.+|.+++.  +.+....  .+.+     ++   .++||.+ | +|+|+||++   ++
T Consensus       188 ~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~~~~~~--~~~~-----di---~t~sK~l-~-~G~~ig~v~---~~  250 (377)
T PRK02936        188 AFLQEVQTLCKKFGALLIIDEVQTGIGRTGT--LFAYEQF--GLDP-----DI---VTVAKGL-G-NGIPVGAMI---GK  250 (377)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHHHhh--CCCC-----cE---EEEcccc-c-CCCccEEEE---Ec
Confidence            9999999999999999999999998876542  2222211  1111     13   3789999 6 899999998   78


Q ss_pred             HHHHHHHHHhhh-cccCcchh
Q psy13922        258 PGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       258 ~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      +++++.+..... .+.+.+.+
T Consensus       251 ~~~~~~~~~~~~~~t~~~~~~  271 (377)
T PRK02936        251 KELGTAFGPGSHGSTFGGNPL  271 (377)
T ss_pred             HHHHhhccCCCCCCCCCCCHH
Confidence            999988864332 23345555

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.91  E-value=2.4e-22  Score=204.96  Aligned_cols=263  Identities=15%  Similarity=0.126  Sum_probs=183.9

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC---
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV---  100 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g---  100 (509)
                      +..|..+.+.+...+..   .. ..|+...+..++++++++++.+.+|.+.+.+++++|+|+++++..++.+++...   
T Consensus         9 ~~~~~~~~~~~~~~~n~---~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~   84 (345)
T cd06450           9 MDPPALLLEMLTSAKNA---ID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKR   84 (345)
T ss_pred             CcHHHHHHHHHHHhcCC---CC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhh
Confidence            33344445555444444   22 338888888999999999999988866455689999999999999999886420   


Q ss_pred             -------CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCC
Q psy13922        101 -------DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTG  172 (509)
Q Consensus       101 -------d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG  172 (509)
                             .+.+..|+++.++|..+...+...|.+++.++.+++  +.+|++.|++.+.+.... .++++|++++|+||||
T Consensus        85 ~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG  162 (345)
T cd06450          85 LKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTG  162 (345)
T ss_pred             hhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCC
Confidence                   011337888999999999888888999999998765  388999999999763221 2577888899999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+.+   +++|+++|+++|+++++|++|..+..... .....   ....    .+.++++ .|++|.+ + ++.++|++.
T Consensus       163 ~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~---~~~~----~~~d~~~-~s~~K~l-~-~p~g~g~~~  228 (345)
T cd06450         163 AIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFP-EPRHL---DFGI----ERVDSIS-VDPHKYG-L-VPLGCSAVL  228 (345)
T ss_pred             CCCC---HHHHHHHHHHhCCeEEEechhhHHHhhCh-hhHHH---hcCc----cccCEEE-EchhHhh-C-CCcchHHHH
Confidence            9855   89999999999999999999988764311 11110   0000    1223444 4999987 3 667888875


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      +   +                  .++                                 ...++..+ .           
T Consensus       229 ~---~------------------~~~---------------------------------~~~~l~~l-~-----------  242 (345)
T cd06450         229 V---R------------------ALK---------------------------------LWATLRRF-G-----------  242 (345)
T ss_pred             H---H------------------HHH---------------------------------HHHHHHHH-h-----------
Confidence            2   2                  110                                 11111111 1           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEe
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAF  373 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~  373 (509)
                       ...+++.+++..++++++.+.|.+++++.+. +++++++.|
T Consensus       243 -~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f  283 (345)
T cd06450         243 -RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCF  283 (345)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEE
Confidence             0125677788888999999999998888765 456676665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.91  E-value=1.2e-21  Score=201.01  Aligned_cols=198  Identities=18%  Similarity=0.221  Sum_probs=152.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         19 QLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        19 ~~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ..+|.+..|+++++++.+++.+        |.   +..++++++++++.+.+|    .+++++|+|+++++.+++.++++
T Consensus        18 t~~g~s~~~~~v~~a~~~~~~~--------~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al~~al~al~~   82 (363)
T TIGR01437        18 TILGVSTVSDEVADAQKRGAQN--------YF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGIAQSVAAVIT   82 (363)
T ss_pred             ecCCCCCCCHHHHHHHHHHHhc--------CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHHHHHHHHHhc
Confidence            3457888999999999998755        32   245677777777777666    35789999999999999999988


Q ss_pred             CCC-----------CCCCeEEEcCCCChhH----HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE
Q psy13922         99 DVD-----------GKKPGVLIPIPQYPLY----SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus        99 ~gd-----------~~~~~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      +||           ..++.|+++.|.|..|    ...+...|++++.++.+    +.+|++.+++++++     ++++++
T Consensus        83 ~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~-----~t~ai~  153 (363)
T TIGR01437        83 RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITE-----KTAAIL  153 (363)
T ss_pred             CCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcCh-----hceEEE
Confidence            875           1244899999888765    46677889999998763    36899999999987     788777


Q ss_pred             -EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 -IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 -i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                       +++|+||+|.+.+   +++|+++|+++|+++|+|++|..       ....+..    .+     .+++ +.|++|.+  
T Consensus       154 ~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~-------~~~~~~~----~g-----~D~~-~~S~~K~l--  211 (363)
T TIGR01437       154 YIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE-------DLQKYYR----LG-----ADLV-IYSGAKAI--  211 (363)
T ss_pred             EEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC-------chHHHHH----cC-----CCEE-EEeCCccc--
Confidence             5789999999988   77889999999999999999962       1111111    11     1244 56899976  


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                       +|.++|+++   .++++++.++.
T Consensus       212 -~gp~~G~l~---~~~~~i~~~~~  231 (363)
T TIGR01437       212 -EGPTSGLVL---GKKKYIEWVKL  231 (363)
T ss_pred             -CCCceEEEE---EcHHHHHHHHh
Confidence             577899987   68888887654

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.91  E-value=1.5e-21  Score=200.69  Aligned_cols=313  Identities=13%  Similarity=0.088  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH--HHHHHhcCCEEEEEec
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYL  133 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~  133 (509)
                      .++|+.+++++    |.+-..++|++|+|++++++.++.++..+++    .+++..+.+.+.  ...++..|.+++.++.
T Consensus        38 ~~~r~~la~l~----~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~----~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~  109 (363)
T TIGR02326        38 EQIRQQLLALA----TAEEGYTSVLLQGSGTFAVEAVIGSAVPKDG----KLLVVINGAYGARIVQIAEYLGIPHHVVDT  109 (363)
T ss_pred             HHHHHHHHHHh----CCCCCceEEEEcCCCHHHHHHHHHhcCCCCC----eEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence            45666666666    4322234799999999999999999988776    777766555544  4667889999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcccc
Q psy13922        134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS  213 (509)
Q Consensus       134 ~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~  213 (509)
                      +++  ..+|++.+++.++..   ++++++.+++++||||..++   +++|.++|+++|+++|+|++++..    . ...+
T Consensus       110 ~~~--~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~g----~-~~~~  176 (363)
T TIGR02326       110 GEV--EPPDVVEVEAILAAD---PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSFG----G-IPID  176 (363)
T ss_pred             CCC--CCCCHHHHHHHHhhC---CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccccc----C-cccc
Confidence            753  378999999998752   14677888999999999998   789999999999999999887641    1 1223


Q ss_pred             HHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccccc-CCCCCc
Q psy13922        214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLF-DDPRFP  292 (509)
Q Consensus       214 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  292 (509)
                      +...         +.+ +++.|++|.+.|.+|  +|+++   .+++.++.+....... ..+..........- ....|.
T Consensus       177 ~~~~---------~~D-~~~~s~~K~l~~p~G--~G~l~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ft  240 (363)
T TIGR02326       177 IAEL---------HID-YLISSANKCIQGVPG--FGFVI---ARQAELAACKGNARSL-SLDLYDQWRCMEDNHGKWRFT  240 (363)
T ss_pred             hhhc---------Ccc-EEEecCccccccCCc--ceEEE---ECHHHHHHhhcCCCce-eecHHHHHHHHhccCCCCCCC
Confidence            3222         122 446699998755556  69988   5777776653211000 00000000000000 000000


Q ss_pred             hhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCeeccC---C
Q psy13922        293 DDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR--EKQSVLDSLKQRAKMVADTFNSIEGMSCNPV---Q  367 (509)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~  367 (509)
                                     .....+.++..+++          .+..  .+++..+++.++++++.+.|+++ |+....+   .
T Consensus       241 ---------------~~~~~~~al~~al~----------~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  294 (363)
T TIGR02326       241 ---------------SPTHVVHAFAQALL----------ELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQ  294 (363)
T ss_pred             ---------------CcHHHHHHHHHHHH----------HHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccC
Confidence                           01113333333322          1111  15667789999999999999888 7776532   4


Q ss_pred             ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCC
Q psy13922        368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKC  447 (509)
Q Consensus       368 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  447 (509)
                      ++...|+.++...         .+ +... +...|+++||.+.||..+.                               
T Consensus       295 ~~~~~~~~~~~~~---------~~-~~~~-v~~~L~~~gi~v~~g~~~~-------------------------------  332 (363)
T TIGR02326       295 SPIITSFYSPEDP---------DY-RFAD-FYQRLKEQGFVIYPGKVSQ-------------------------------  332 (363)
T ss_pred             CceEEEEECCCCC---------CC-CHHH-HHHHHHHCCEEEECCcCCC-------------------------------
Confidence            5566665554100         01 1233 3455677899999876431                               


Q ss_pred             CchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e-cChHHHHHHHHHHHHHH
Q psy13922        448 PSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L-PQPEKLKAMLEKFREFH  501 (509)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~-~~~~~i~~~~~~l~~~~  501 (509)
                                        ..          +||+++ + ++.++++++++.|++++
T Consensus       333 ------------------~~----------~iRi~~~~~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       333 ------------------VD----------CFRIGNIGEVDAADITRLLTAIGKAM  360 (363)
T ss_pred             ------------------CC----------EEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                              11          899996 4 79999999999998876

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.91  E-value=2.2e-22  Score=210.39  Aligned_cols=209  Identities=12%  Similarity=0.128  Sum_probs=145.3

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVDGK  103 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~~  103 (509)
                      -+|.+.+++.+++..     .+.|+...+..++...+++.+.+.++  ...+++++++|+++|+..+++.++.  +++  
T Consensus        53 ~~p~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgsea~~~al~~~~~~~~~~--  123 (413)
T cd00610          53 NHPEVVEALKEQLAK-----LTHFSLGFFYNEPAVELAELLLALTP--EGLDKVFFVNSGTEAVEAALKLARAYTGRK--  123 (413)
T ss_pred             CCHHHHHHHHHHHHh-----CcCccCcccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHcCCC--
Confidence            478899999999866     12344332345566666666665555  3578999999999999999998853  444  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcC-------------CEEEEEecCCC----CCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFN-------------MEQIGYYLDES----KQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~----~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                        .|++.+++|+++.......+             .+++.+|.++.    ..+..|++.|++.+++..  .++++++++.
T Consensus       124 --~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~vi~~p  199 (413)
T cd00610         124 --KIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP--EEVAAVIVEP  199 (413)
T ss_pred             --eEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC--CCEEEEEEcc
Confidence              99999999999765544332             23455554421    123458899999887521  1466777766


Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        167 PGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       167 p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      .+|++|..+ +++++++|.++|++||+++|+||+|.++...+.  .... +. .+..+     +   +.|+||.+ | .|
T Consensus       200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~--~~~~-~~-~~~~~-----d---~~t~sK~l-~-~g  265 (413)
T cd00610         200 IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK--MFAF-EH-FGVEP-----D---IVTLGKGL-G-GG  265 (413)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhhH-hh-cCCCC-----C---eEEEcccc-c-Cc
Confidence            677889865 778899999999999999999999998754321  1111 11 11111     1   34889999 5 58


Q ss_pred             CeeEEEeeecCCHHHHHHH
Q psy13922        246 LRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l  264 (509)
                      +|+||++   +++++++.+
T Consensus       266 ~~~g~~~---~~~~~~~~~  281 (413)
T cd00610         266 LPLGAVL---GREEIMDAF  281 (413)
T ss_pred             cccEEEE---EcHHHHHhh
Confidence            9999998   788899886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.90  E-value=2e-21  Score=200.11  Aligned_cols=320  Identities=11%  Similarity=0.041  Sum_probs=201.9

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH--HHHHHhcCCEEEEE
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGY  131 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v  131 (509)
                      -..++|+.+++++    |.+-..+.|++|+|+++++..++..+..+++    .|+++.++|.+.  ...++..|++++.+
T Consensus        38 ~~~~~~~~l~~l~----~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~----~vlv~~~~~~~~~~~~~~~~~g~~~~~i  109 (368)
T PRK13479         38 LTASVRAKLVAIA----TGEEGYTCVPLQGSGTFSVEAAIGSLVPRDG----KVLVPDNGAYGARIAQIAEYLGIAHVVL  109 (368)
T ss_pred             HHHHHHHHHHHHh----CCCCCceEEEEcCCcHHHHHHHHHhccCCCC----eEEEEeCCchHHHHHHHHHHcCCcEEEE
Confidence            4466777777777    4222235688999999999999999998887    999988887765  47778899999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +.+++  +.+|++.+++.+++.   +++++|++++|+||||...+   +++|.++|+++|+++|+|+++ .+..    ..
T Consensus       110 ~~~~~--~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~-~~g~----~~  176 (368)
T PRK13479        110 DTGED--EPPDAAEVEAALAAD---PRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMS-SFGA----IP  176 (368)
T ss_pred             ECCCC--CCCCHHHHHHHHHhC---CCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEccc-ccCC----cc
Confidence            98643  468999999998752   14678889999999999988   788999999999999999665 3321    11


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCC
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRF  291 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (509)
                      .++...         +.+++ +.|++|.+.|++|  +||++   .++++++.+......+ ..+.........--....|
T Consensus       177 ~~~~~~---------~~d~~-v~s~~K~l~g~~G--~G~l~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (368)
T PRK13479        177 IDIAEL---------GIDAL-ISSANKCIEGVPG--FGFVI---ARRSELEACKGNSRSL-SLDLYDQWAYMEKTGQWRF  240 (368)
T ss_pred             cccccc---------CceEE-EecCccccccCCC--ceEEE---ECHHHHHHhhcCCCCe-eecHHHHHhhhcccCCCCC
Confidence            222211         12244 5689997646777  59998   6888888775432111 0010000000000000001


Q ss_pred             chhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC---c
Q psy13922        292 PDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ---G  368 (509)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~  368 (509)
                      .               .......++..+++        +-.....+++.++.+.++++.+.+.|+++ |+++..+.   .
T Consensus       241 t---------------~~~~~~~~l~~al~--------~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  296 (368)
T PRK13479        241 T---------------PPTHVVAAFYQALL--------ELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQS  296 (368)
T ss_pred             C---------------CcHHHHHHHHHHHH--------HHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcC
Confidence            0               00012222222221        00001124666788899999999999988 77765321   2


Q ss_pred             eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCC
Q psy13922        369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCP  448 (509)
Q Consensus       369 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  448 (509)
                      +..+.+.+..+.         ++ +... +...|.++||.+.+|..+.                                
T Consensus       297 ~~~~~~~~~~~~---------~~-~~~~-l~~~L~~~gi~v~~g~~~~--------------------------------  333 (368)
T PRK13479        297 PIIVTFHAPADP---------AY-DFKE-FYERLKEQGFVIYPGKLTQ--------------------------------  333 (368)
T ss_pred             ceEEEEECCCCC---------Cc-CHHH-HHHHHHHCCEEEecCCCCC--------------------------------
Confidence            222222222110         11 2233 3555667799998864321                                


Q ss_pred             chhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e-cChHHHHHHHHHHHHHHHHH
Q psy13922        449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L-PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~-~~~~~i~~~~~~l~~~~~~~  504 (509)
                                       ..          ++|++. . +++++++.+++.|++++++.
T Consensus       334 -----------------~~----------~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        334 -----------------VD----------TFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             -----------------CC----------EEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence                             11          799986 4 79999999999999998764

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=4.4e-21  Score=200.18  Aligned_cols=327  Identities=14%  Similarity=0.124  Sum_probs=209.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcc---cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG---SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~---~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd  101 (509)
                      +|.|++++.++++....+...   .+....-..++++.+++++    |    .+..++++++++++..++..+..  +++
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~SG~~An~~ai~~l~~~~~g~  132 (406)
T PRK13393         61 HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLH----G----KEAALLFTSGYVSNWAALSTLGSRLPGC  132 (406)
T ss_pred             CHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHh----C----CCcEEEeCCcHHHHHHHHHHhhcCCCCC
Confidence            578999999999874322111   0111222355666666666    3    24444444445788888887765  454


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|++....|......+...|.++..++.       .|++.+++.++... ..++++|++++++|++|.+.+   ++
T Consensus       133 ----~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~-~~~~~~v~~~~v~~~~G~~~~---l~  197 (406)
T PRK13393        133 ----VILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLD-PHRPKLVAFESVYSMDGDIAP---IA  197 (406)
T ss_pred             ----EEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhcc-CCCCEEEEEcCCCCCCCchhC---HH
Confidence                6666677777777788888888776653       36788888776421 125788889999999999988   88


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|+++|+++|+||+|....++..  ...+... .++.    ....|+++||||.+ |++|   ||++   ++++++
T Consensus       198 ~i~~l~~~~~~~livDea~~~g~~g~~--G~g~~~~-~~~~----~~~~i~~~tlsKa~-g~~G---G~~~---~~~~~~  263 (406)
T PRK13393        198 EICDVAEKHGAMTYLDEVHAVGLYGPR--GGGIAER-EGLA----DRLTIIEGTLAKAF-GVMG---GYIT---GSAALC  263 (406)
T ss_pred             HHHHHHHHcCCEEEEECCccccccCCC--CCchhhh-cCCC----CCCeEEEEeCchhh-cccC---ceee---CCHHHH
Confidence            999999999999999999985444321  1222111 1111    11256678999999 6777   8987   789999


Q ss_pred             HHHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......+   .+.+..                                  .+++...+++          ...+ ..
T Consensus       264 ~~l~~~~~~~~~t~~~~p~----------------------------------~~aa~~aaL~----------~~~~-~~  298 (406)
T PRK13393        264 DFIRSFASGFIFTTSLPPA----------------------------------VAAGALASVR----------HLKA-SS  298 (406)
T ss_pred             HHHHHhCcCceecCccCHH----------------------------------HHHHHHHHHH----------HHhh-CH
Confidence            9887654422   122322                                  1222222211          0101 11


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ..+..++++.+++.+.|+++ ++.+.++.+.++.+ .+..+.            ....+...+++++||.+.++.....+
T Consensus       299 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~~v-~~~~~~------------~~~~l~~~L~~~~Gi~v~~~~~p~~p  364 (406)
T PRK13393        299 AERERHQDRVARLRARLDKA-GIPHLPNPSHIVPV-MVGDPV------------LCKQISDELLDRYGIYVQPINYPTVP  364 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCeEEE-EeCCHH------------HHHHHHHHHHHhCCEEEEeECCCCCC
Confidence            22456678888899999887 77777777776544 232111            12344455566679999986543331


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+..        ++|+++.  +++++++++++.
T Consensus       365 -----------------------------------------------~g~~--------~iRis~~~~~t~edid~l~~~  389 (406)
T PRK13393        365 -----------------------------------------------RGTE--------RLRITPSPLHTDADIEHLVQA  389 (406)
T ss_pred             -----------------------------------------------CCCc--------eEEEEECCCCCHHHHHHHHHH
Confidence                                                           1222        8999887  899999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      |+++++++
T Consensus       390 l~~~~~~~  397 (406)
T PRK13393        390 LSEIWARL  397 (406)
T ss_pred             HHHHHHhc
Confidence            99987653

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.90  E-value=4.1e-22  Score=207.21  Aligned_cols=320  Identities=12%  Similarity=0.092  Sum_probs=198.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----VD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----gd  101 (509)
                      .|.|.+++.+++++...  ..++-......+|.+.++++.    +    .+.+++++++++|+..+++..+.-     |.
T Consensus        58 ~p~v~~ai~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~  127 (396)
T PRK04073         58 HPKIIQALKDQADKVTL--TSRAFHSDQLGPWYEKVAKLT----G----KDMVLPMNTGAEAVETAIKAARRWAYDVKGV  127 (396)
T ss_pred             CHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhcC----C----CCeEEEcCChHHHHHHHHHHHHHHhhhccCC
Confidence            68999999999887321  111111222234444444432    2    368999999999999999987531     11


Q ss_pred             -CCCCeEEEcCCCChhHHHHHHh-cCCEEEE---EecCCC-CC-CCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922        102 -GKKPGVLIPIPQYPLYSASLAE-FNMEQIG---YYLDES-KQ-WGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus       102 -~~~~~Vlv~~p~y~~~~~~~~~-~g~~~~~---v~~~~~-~~-~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                       ..++.|+...-+|++....+.. .+.....   -+..++ .. ...|++.+++.+.+     ++++|+++.++||+|..
T Consensus       128 ~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-----~~~~viiep~~~~~G~~  202 (396)
T PRK04073        128 EPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITP-----NTAAFLVEPIQGEAGIN  202 (396)
T ss_pred             CCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhccc-----CeEEEEEcCccCCCCCc
Confidence             1234788888888876533322 2211000   000000 00 01278899888865     78999999999999998


Q ss_pred             CCH-HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        175 LTK-ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       175 ~s~-~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +++ +++++|.++|+++|+++|+||+|.+|..++.  ..+. +. .+..     .++   .++||.+ |.+|+|+||++ 
T Consensus       203 ~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~~-~~-~~~~-----pdi---~~~sK~l-g~gg~~ig~~~-  268 (396)
T PRK04073        203 IPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK--LFAC-DW-DNVT-----PDM---YILGKAL-GGGVFPISCVA-  268 (396)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH--HHHh-hh-cCCC-----CCE---EEecccc-cCCCCcceEEE-
Confidence            765 5799999999999999999999998765431  1111 11 1111     123   3679999 67889999998 


Q ss_pred             ecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        254 INLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                        +++++++.+..... ...+.+.+++.+                              +.+++..+.+           
T Consensus       269 --~~~~i~~~~~~~~~~~t~~~~~~~~aa------------------------------a~aaL~~~~~-----------  305 (396)
T PRK04073        269 --ANRDILGVFTPGSHGSTFGGNPLACAV------------------------------SIAALEVLEE-----------  305 (396)
T ss_pred             --EcHHHHhhhcCCCCCCCCCCCHHHHHH------------------------------HHHHHHHHHh-----------
Confidence              78999988864322 233445552222                              2233322111           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSI--EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                           +.+.+..+++.+++.+.|+++  +.+....+.| .++++++..              ....+. ..|.++||.+.
T Consensus       306 -----~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g-~~~~~~~~~--------------~~~~~~-~~l~~~Gv~~~  364 (396)
T PRK04073        306 -----EKLPERSLELGEYFKEQLKEIDNPMIKEVRGRG-LFIGVELNE--------------PARPYC-EALKEEGLLCK  364 (396)
T ss_pred             -----cCHHHHHHHHHHHHHHHHHhhcCCcccceecce-EEEEEEecc--------------hHHHHH-HHHHHCCeEEe
Confidence                 123355566677778878775  2333334554 456665531              133444 44556799987


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE--eecChH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT--ILPQPE  488 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls--~~~~~~  488 (509)
                      +..                                                    +  +        ++|++  +..+++
T Consensus       365 ~~~----------------------------------------------------~--~--------~iRi~p~l~~t~e  382 (396)
T PRK04073        365 ETH----------------------------------------------------E--T--------VIRFAPPLVITKE  382 (396)
T ss_pred             cCC----------------------------------------------------C--C--------EEEEECCcccCHH
Confidence            521                                                    1  2        89999  569999


Q ss_pred             HHHHHHHHHHHHH
Q psy13922        489 KLKAMLEKFREFH  501 (509)
Q Consensus       489 ~i~~~~~~l~~~~  501 (509)
                      ++++++++|++++
T Consensus       383 ~i~~~~~~l~~~l  395 (396)
T PRK04073        383 ELDWAFEKIKAVL  395 (396)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>PLN02242 methionine gamma-lyase

Probab=99.90  E-value=2.9e-21  Score=201.03  Aligned_cols=217  Identities=16%  Similarity=0.139  Sum_probs=161.4

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH-----HhcCCEE
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL-----AEFNMEQ  128 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~-----~~~g~~~  128 (509)
                      -..+|++.++++++        .+.+++|+|+++|+..++.+++++||    .|+++.|.|..+...+     +..|.++
T Consensus        77 t~~~LE~~lA~l~g--------~~~~l~~~sG~~Ai~~al~al~~~GD----~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~  144 (418)
T PLN02242         77 TVLNLGRQMAALEG--------TEAAYCTASGMSAISSVLLQLCSSGG----HVVASNTLYGGTHALLAHFLPRKCNITT  144 (418)
T ss_pred             hHHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCC----EEEEcCCcHHHHHHHHHHhhhhccCceE
Confidence            34788889998873        35678999999999999999999999    9999999998886655     3468887


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC
Q psy13922        129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG  208 (509)
Q Consensus       129 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~  208 (509)
                      +.++.       .|++.+++++++.    ++++|++++|+||||.+++   +++|+++|+++|++||+|++|..+.+.. 
T Consensus       145 ~~~d~-------~d~e~l~~~i~~~----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~-  209 (418)
T PLN02242        145 TFVDI-------TDLEAVKKAVVPG----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP-  209 (418)
T ss_pred             EEcCC-------CCHHHHHHhcCcC----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH-
Confidence            76653       2789999988752    4999999999999999975   8999999999999999999998765421 


Q ss_pred             CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe-eEEEeeecCCHHHHHHHHHhhhc---ccCcchhhhhcccc
Q psy13922        209 SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR-GGYSEVINLDPGVKAMLHKSISA---MLCPTVLALVSLPQ  284 (509)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr-~G~v~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~  284 (509)
                            ..+    +      ..|+++|+||.+ |.+|.+ +||++   +++++++.+.+....   ..+.+..       
T Consensus       210 ------~~~----g------~divv~S~SK~l-~g~g~~~gG~iv---~~~~li~~l~~~~~~~~~~~g~~~~-------  262 (418)
T PLN02242        210 ------ARL----G------ADVVVHSISKFI-SGGADIIAGAVC---GPAELVNSMMDLHHGALMLLGPTMN-------  262 (418)
T ss_pred             ------HHc----C------CcEEEEeCcccc-CCCCCceEEEEE---cCHHHHHHHHHHhhhhhhccCCCCC-------
Confidence                  111    1      146688999999 568877 58887   788999988866432   2232332       


Q ss_pred             ccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec
Q psy13922        285 LFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN  364 (509)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  364 (509)
                                                 .+.|...+...        .    .+...++.+.++++.+.+.|++. ++++.
T Consensus       263 ---------------------------~~~A~l~~~~l--------~----tl~~r~~~~~~~a~~la~~L~~~-~~~V~  302 (418)
T PLN02242        263 ---------------------------PKVAFELSERL--------P----HLSLRMKEHCRRAMEYAKRMKEL-GLKVI  302 (418)
T ss_pred             ---------------------------HHHHHHHHcCC--------C----cHHHHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence                                       22332222220        1    14445668888999999999988 45554

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.90  E-value=1.3e-20  Score=194.21  Aligned_cols=336  Identities=15%  Similarity=0.143  Sum_probs=213.5

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      ..+.+++++.+.+..... ....|+   +..++.+.+.+.+.+.+|  .+.+++++|+|+++++..+++.+.....++++
T Consensus        32 ~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~  105 (371)
T PRK13520         32 PHPIARKAHEMFLETNLG-DPGLFP---GTAKLEEEAVEMLGELLH--LPDAYGYITSGGTEANIQAVRAARNLAKAEKP  105 (371)
T ss_pred             chHHHHHHHHHHHhcCCC-CcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence            346778888888876221 222232   334444445455544445  44567899999999999998887653211234


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|++..+.|..+...++..|.+++.+|.+++  +.+|++.|++.+++     ++++|+++.++|+||.+.+   +++|.+
T Consensus       106 ~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~-----~~~~vi~~~~~~~tG~~~~---l~~I~~  175 (371)
T PRK13520        106 NIVVPESAHFSFDKAADMLGVELRRAPLDDD--YRVDVKAVEDLIDD-----NTIGIVGIAGTTELGQVDP---IPELSK  175 (371)
T ss_pred             eEEecCcchHHHHHHHHHcCceEEEecCCCC--CcCCHHHHHHHHhh-----CCEEEEEEcCCcCCcccCC---HHHHHH
Confidence            9999999999999999999999999987643  47899999999987     6888888888999999987   889999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|+++++|++|..+..........+ .+    .  ....+.+.+ |.+|.  |.+|.++|++++  .++++++.+.
T Consensus       176 l~~~~g~~livD~a~~~~~~~~~~~~~~~-~~----~--~~~vd~~~~-s~~K~--~~a~~~~G~~~~--~~~~~~~~l~  243 (371)
T PRK13520        176 IALENGIFLHVDAAFGGFVIPFLDDPPNF-DF----S--LPGVDSITI-DPHKM--GLAPIPAGGILF--RDESYLDALA  243 (371)
T ss_pred             HHHHcCCCEEEEecchhHHHHhhcCCCCc-cc----c--CCCCceEEE-CCccc--cCccCCceEEEE--cCHHHHHhhc
Confidence            99999999999999987642110000000 00    0  012234444 66785  457889998874  6777777664


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      ... .+.....             .+           ...++.......++..++.         .-.....++.++...
T Consensus       244 ~~~-~~~~~~~-------------~~-----------~~~gt~~~~~~~~~~~al~---------~l~~~g~~~~~~~~~  289 (371)
T PRK13520        244 VDT-PYLTSKK-------------QA-----------TLTGTRSGAGVAATYAVMK---------YLGREGYRKVVERCM  289 (371)
T ss_pred             ccC-ccccCCC-------------Cc-----------ceEeeccChHHHHHHHHHh---------hhcHhHHHHHHHHHH
Confidence            211 1100000             00           0000000001222222221         000112566778888


Q ss_pred             HHHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcccc
Q psy13922        346 QRAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF  424 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~  424 (509)
                      ++++++.+.|+++ |++ +..+..+++. +++.               +..+ +...|.++||.+.++.   .       
T Consensus       290 ~~~~~l~~~L~~~-g~~~~~~~~~~~v~-~~~~---------------~~~~-v~~~L~~~gi~v~~~~---~-------  341 (371)
T PRK13520        290 ENTRWLAEELKER-GFEPVIEPVLNIVA-FDDP---------------NPDE-VREKLRERGWRVSVTR---C-------  341 (371)
T ss_pred             HHHHHHHHHHHhC-CCEEecCCCceEEE-EecC---------------CHHH-HHHHHHHCCceeccCC---C-------
Confidence            8999999999988 887 5556666443 3333               1233 3455566799887532   1       


Q ss_pred             ccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHH
Q psy13922        425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       425 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~  502 (509)
                                                               +.          ++|+|+.  +++++++.+++.|+++++
T Consensus       342 -----------------------------------------~~----------~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        342 -----------------------------------------PE----------ALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             -----------------------------------------CC----------EEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence                                                     12          7999987  799999999999988764

>PRK14012 cysteine desulfurase; Provisional

Probab=99.90  E-value=2e-21  Score=202.67  Aligned_cols=193  Identities=17%  Similarity=0.233  Sum_probs=140.2

Q ss_pred             CCCCCHHHHHHHHHHHh--cccCCCcc-----cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         23 DPRFPDDVKQRAQAVLD--GCRGQSVG-----SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~--~~~~~~~~-----~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      ...+|+.+++++.+.+.  ........     .|.......++|+.+++++    |  .++++|++|+|++++++.++.+
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----g--~~~~~v~~~~g~t~al~~~l~~   85 (404)
T PRK14012         12 TTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI----G--ADPREIVFTSGATESDNLAIKG   85 (404)
T ss_pred             CCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc----C--cCcCeEEEeCCHHHHHHHHHHH
Confidence            34568899999988886  21111110     0111123456778888777    3  5678899999999999999887


Q ss_pred             hh----cCCCCCCCeEEEcCCCChhHHHHH---HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         96 LI----EDVDGKKPGVLIPIPQYPLYSASL---AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        96 l~----~~gd~~~~~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      +.    ++||    .|+++.++|..+...+   +..|++++.++.+++  +.+|++.|++.+++     ++++|++++++
T Consensus        86 l~~~~~~~gd----~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~--g~~d~~~l~~~i~~-----~t~lv~~~~~~  154 (404)
T PRK14012         86 AAHFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSN--GIIDLEKLEAAMRD-----DTILVSIMHVN  154 (404)
T ss_pred             HHHhhcCCCC----EEEEecCccHHHHHHHHHHHhCCCEEEEEccCCC--CcCCHHHHHHhcCC-----CCEEEEEECcC
Confidence            74    5676    9999999998775544   446999999988754  47899999999987     79999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ||||.+++   +++|.++|+++|+++|+|++++....     ...+...         +.+++++ |++|.+ | |+ ++
T Consensus       155 n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~~-----~~~~~~~---------~~D~~~~-s~~K~~-g-p~-g~  213 (404)
T PRK14012        155 NEIGVIQD---IAAIGEICRERGIIFHVDAAQSVGKV-----PIDLSKL---------KVDLMSF-SAHKIY-G-PK-GI  213 (404)
T ss_pred             CCccchhh---HHHHHHHHHHcCCEEEEEcchhcCCc-----ccCcccC---------CCCEEEE-ehhhcc-C-CC-ce
Confidence            99999987   88999999999999999999875221     1111111         1225544 889988 6 44 57


Q ss_pred             EEEee
Q psy13922        249 GYSEV  253 (509)
Q Consensus       249 G~v~~  253 (509)
                      |++++
T Consensus       214 G~l~~  218 (404)
T PRK14012        214 GALYV  218 (404)
T ss_pred             EEEEE
Confidence            87763

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.89  E-value=1.6e-21  Score=203.22  Aligned_cols=320  Identities=12%  Similarity=0.139  Sum_probs=203.1

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC----C
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV----D  101 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g----d  101 (509)
                      -+|.+.+++.++++....  ......    .+...++++.+.+..+    .+.+++++++++|+..+++....-.    .
T Consensus        57 ~~p~v~~a~~~~~~~~~~--~~~~~~----~~~~~~l~~~l~~~~~----~~~~~~~~sGseA~e~a~klar~~~~~~~~  126 (403)
T PRK05093         57 CHPALVKALKEQGEKLWH--ISNVFT----NEPALRLAKKLIDATF----AERVFFANSGAEANEAAFKLARRYACDRHG  126 (403)
T ss_pred             CCHHHHHHHHHHHHhcCc--ccCccC----CHHHHHHHHHHHhhCC----CCEEEEeCchHHHHHHHHHHHHHHHhhcCC
Confidence            478999999998876211  111111    2223345555543322    3689999999999999998764321    1


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      ..+..|+..+-+|++....+... +.            +++.++       ..|++.+++.+.+     ++++|+++ |.
T Consensus       127 ~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~-----~~aaiiie-p~  193 (403)
T PRK05093        127 PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVP-------FNDLAAVKAVIDD-----HTCAVVVE-PI  193 (403)
T ss_pred             CCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeC-------CCCHHHHHHHhcC-----CeEEEEEe-cc
Confidence            12447888888888865433222 11            112221       1278999988865     68888887 77


Q ss_pred             CCCCCCC--CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC
Q psy13922        169 NPTGQVL--TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL  246 (509)
Q Consensus       169 NPtG~~~--s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl  246 (509)
                      ||+|-.+  +++++++|.++|++||+++|+||+|.++.+++.  ..+...  .++.++        +.||||.+ | +|+
T Consensus       194 ~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~--~~~~pd--------i~s~sK~l-~-~G~  259 (403)
T PRK05093        194 QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD--LFAYMH--YGVTPD--------ILTSAKAL-G-GGF  259 (403)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhhhh--cCCCCC--------EEEecccc-c-CCc
Confidence            7777654  899999999999999999999999998877642  222111  111111        45899999 6 899


Q ss_pred             eeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCC
Q psy13922        247 RGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQP  325 (509)
Q Consensus       247 r~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  325 (509)
                      |+||++   +++++++.+..... ...+.+.+                                  .|++....++    
T Consensus       260 rig~vv---~~~~i~~~l~~~~~~~t~~~~~~----------------------------------~~~aa~a~L~----  298 (403)
T PRK05093        260 PIGAML---TTAEIASHFKVGTHGSTYGGNPL----------------------------------ACAVAEAVFD----  298 (403)
T ss_pred             ceEEEE---EcHHHHhhcCCCCCCCCCCCCHH----------------------------------HHHHHHHHHH----
Confidence            999998   78999988865322 33344555                                  3333222211    


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHH
Q psy13922        326 GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELL  402 (509)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll  402 (509)
                             ... ....++.++++.+.+.+.|+++.   ++....+.+|+++|+.+.-+.          ...+.+++..++
T Consensus       299 -------~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~----------~~~~~~~~~~l~  360 (403)
T PRK05093        299 -------IIN-TPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQY----------KGRARDFLNAAA  360 (403)
T ss_pred             -------HHh-hccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcc----------hhHHHHHHHHHH
Confidence                   000 13345677888888888887751   121223456888887664110          012344554444


Q ss_pred             hhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE
Q psy13922        403 ERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT  482 (509)
Q Consensus       403 ~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls  482 (509)
                       +.||.+.|+                                                      +.+        ++|++
T Consensus       361 -~~Gv~v~~~------------------------------------------------------g~~--------~lRl~  377 (403)
T PRK05093        361 -EEGVMVLVA------------------------------------------------------GPD--------VLRFA  377 (403)
T ss_pred             -HCCeEEecC------------------------------------------------------CCC--------EEEEe
Confidence             569998862                                                      112        89996


Q ss_pred             --eecChHHHHHHHHHHHHHHHHH
Q psy13922        483 --ILPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       483 --~~~~~~~i~~~~~~l~~~~~~~  504 (509)
                        +..++++|++++++|.++++++
T Consensus       378 ~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        378 PSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHh
Confidence              4479999999999999998754

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.89  E-value=4.8e-21  Score=200.82  Aligned_cols=344  Identities=11%  Similarity=0.047  Sum_probs=207.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      ++.+.+++.+++.+.   .+. +.+..+.+ ...++++.+....+.+.. +.+++++++++|+..+++....-..  +..
T Consensus        59 ~~~i~~a~~~~~~~~---~~~-~~~~~~~~-~~~~la~~l~~~~~~~~~-~~~~f~~sGsea~e~Alklar~~~~--r~~  130 (425)
T PRK08088         59 HPKVVAAVEAQLKKL---SHT-CFQVLAYE-PYLELCEKMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAATK--RSG  130 (425)
T ss_pred             CHHHHHHHHHHHhhC---CCc-cccccCCH-HHHHHHHHHHHhCCCCCC-CEEEEeCCcHHHHHHHHHHHHHHhC--CCe
Confidence            789999999999873   222 22212222 344777777665443322 4677777777888888877654321  336


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEE----------------EecCCCCCCCC--CHHHHHHHHHhhhccCCceEEEE-eCC
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIG----------------YYLDESKQWGL--PISELERSITEARKHCNPRAIVI-INP  167 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~----------------v~~~~~~~~~~--d~~~L~~~i~~~~~~~~~~~ivi-~~p  167 (509)
                      |+...++|++....+...+.....                +|.+.. +...  +++.|++.++......++++|++ +..
T Consensus       131 iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~  209 (425)
T PRK08088        131 VIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH-GVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQ  209 (425)
T ss_pred             EEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcccc-CccHHHHHHHHHHHHHhccCCCceEEEEECccc
Confidence            888899999987666654432111                111111 0111  14567777763111126778777 466


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      +|++....+++.+++|.++|++||+++|+||+|.++.+.+  ...++...  ++        +.-+.||||.+ | +|+|
T Consensus       210 ~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g--~~~~~~~~--~~--------~pdi~s~sK~l-~-~G~r  275 (425)
T PRK08088        210 GEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG--TLFAMEQM--GV--------AADLTTFAKSI-A-GGFP  275 (425)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--chhHHhhc--CC--------CCCEEEEeccc-c-CCCc
Confidence            8887789999999999999999999999999999876543  12222111  11        22267999999 5 8999


Q ss_pred             eEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      +||++   +++++++.+..... .+.+.+.+                                  .+++....++     
T Consensus       276 ig~v~---~~~~~~~~~~~~~~~~t~~~~~~----------------------------------~~~a~~~~l~-----  313 (425)
T PRK08088        276 LAGVT---GRAEVMDAIAPGGLGGTYAGNPI----------------------------------ACAAALAVLK-----  313 (425)
T ss_pred             ceeeE---ecHHHHhhcCCCCCCCCCCcCHH----------------------------------HHHHHHHHHH-----
Confidence            99998   79999998865433 33445555                                  3333333332     


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                      ...++++   ++++++..+++++.+.+.+.+.|.+..+... |+++|+.+.-+...    .......... +...+.+.|
T Consensus       314 ~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~----~~p~~~~~~~-l~~~~~~~G  384 (425)
T PRK08088        314 VFEQENL---LQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDH----SKPNAKLTAQ-IVARARDKG  384 (425)
T ss_pred             HHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCC----CCCCHHHHHH-HHHHHHhCC
Confidence            0001222   4455555555555555544555443323233 78899877311000    0000001233 344555679


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |.+.|+..|..                                                            .+||+++  
T Consensus       385 v~~~~~~~~~~------------------------------------------------------------~iRl~~~~~  404 (425)
T PRK08088        385 LILLSCGPYYN------------------------------------------------------------VLRILVPLT  404 (425)
T ss_pred             CEEecCCCCCC------------------------------------------------------------EEEEECCCC
Confidence            98887543322                                                            7999988  


Q ss_pred             cChHHHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~  504 (509)
                      .++++|++++++|.+++++.
T Consensus       405 ~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        405 IEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             cCHHHHHHHHHHHHHHHHhh
Confidence            68999999999999998753

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.89  E-value=2e-21  Score=203.84  Aligned_cols=206  Identities=13%  Similarity=0.072  Sum_probs=143.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|++++.+++.+   .... +.+..+..+|++++++++.       ..++|++++|+++|+..+++..+.-..  +++
T Consensus        66 ~p~v~~ai~~q~~~---~~~~-~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGseA~e~Alk~ar~~~g--r~~  132 (423)
T TIGR00713        66 HPRVVEAVKEALER---GTSY-GAPTEAEILLAKEIISRVP-------SVEMVRFVNSGTEATMSAVRLARGYTG--RDK  132 (423)
T ss_pred             CHHHHHHHHHHHHh---CCcC-CCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHHHHHHHHHHHHHHhhC--CCE
Confidence            78999999999987   2222 2356677899999998873       136899999999999999987654221  348


Q ss_pred             EEEcCCCChhHHHHHHh---cCCEEEEEecCCC-------CCC---CCCHHHHHHHHHhhhccCCceEEEE-eCCCCCCC
Q psy13922        107 VLIPIPQYPLYSASLAE---FNMEQIGYYLDES-------KQW---GLPISELERSITEARKHCNPRAIVI-INPGNPTG  172 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~-------~~~---~~d~~~L~~~i~~~~~~~~~~~ivi-~~p~NPtG  172 (509)
                      |+...++|+++...+..   .+......+..+.       ..+   ..|++.+++.+++..  .++++|++ +.|+| +|
T Consensus       133 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~aavi~ep~~~~-~G  209 (423)
T TIGR00713       133 IIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYG--EEIAGVIVEPVAGN-MG  209 (423)
T ss_pred             EEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcC--CcEEEEEEeCCCCC-CC
Confidence            99999999997654432   1111111111100       000   127899999887421  26788888 58888 78


Q ss_pred             CCCC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        173 QVLT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       173 ~~~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      .+++ ++++++|.++|++||+++|+||+|.+|.++ . .+ . .+. ....+     +   +.+|||.+ | +|+|+||+
T Consensus       210 ~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g-~-~~-~-~~~-~~~~p-----D---i~t~sK~l-~-~G~pig~v  274 (423)
T TIGR00713       210 VVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVA-L-GG-A-QEY-FGVEP-----D---LTTLGKII-G-GGLPVGAF  274 (423)
T ss_pred             CcCCCHHHHHHHHHHHHHhCCEEEEEccccccccC-c-ch-h-HHH-hCCCc-----c---hhhhhhhh-c-CCCceeee
Confidence            8777 699999999999999999999999988442 1 11 1 111 11111     1   23789999 6 89999999


Q ss_pred             eeecCCHHHHHHHHH
Q psy13922        252 EVINLDPGVKAMLHK  266 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~  266 (509)
                      +   .++++++.+..
T Consensus       275 ~---~~~~i~~~~~~  286 (423)
T TIGR00713       275 G---GRREIMERLAP  286 (423)
T ss_pred             e---EHHHHHHhhCc
Confidence            8   78899998863

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.89  E-value=4.5e-20  Score=191.02  Aligned_cols=195  Identities=16%  Similarity=0.210  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeE
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGV  107 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~V  107 (509)
                      +.+.+.+...........+.+|+.+ -..++++.+++++    |    .+++++|+|+++|+..++.++.++||    +|
T Consensus        37 ~~~~~~~~~~~~~~~~~~y~r~~~p-~~~~le~~la~l~----g----~~~~v~~ssG~~Ai~~al~al~~~Gd----~V  103 (390)
T PRK08133         37 ESAAEAAARFAGEEPGNIYSRFTNP-TVTMFQERLAALE----G----AEACVATASGMAAILAVVMALLQAGD----HV  103 (390)
T ss_pred             CCHHHHHHhhcCCcCCceeECCCCh-HHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCC----EE
Confidence            3455555444333222233444432 3467888888887    2    35689999999999999999999998    99


Q ss_pred             EEcCCCChhHHH----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        108 LIPIPQYPLYSA----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       108 lv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                      +++.+.|.+...    .+...|++++.++.+       |++.+++.+++     ++++|++++|+||+|.+.+   +++|
T Consensus       104 i~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-------d~~~l~~~i~~-----~tklV~ie~p~NptG~v~d---l~~I  168 (390)
T PRK08133        104 VSSRSLFGSTVSLFEKIFARFGIETTFVDLT-------DLDAWRAAVRP-----NTKLFFLETPSNPLTELAD---IAAL  168 (390)
T ss_pred             EEccCcchhHHHHHHHHHHHcCcEEEEECCC-------CHHHHHHhcCc-----CCeEEEEECCCCCCCCcCC---HHHH
Confidence            999998876543    456789999988753       68899988876     7999999999999999987   8999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      +++|+++|+++|+|++|......     .++ .    .+.      .++++|+||.+ |.+|.++|++++  .++++++.
T Consensus       169 ~~la~~~gi~livD~t~~~~~~~-----~pl-~----~g~------Divv~S~sK~~-~g~g~~~GG~vv--~~~~~~~~  229 (390)
T PRK08133        169 AEIAHAAGALLVVDNCFCTPALQ-----QPL-K----LGA------DVVIHSATKYL-DGQGRVLGGAVV--GSKELMEE  229 (390)
T ss_pred             HHHHHHcCCEEEEECCCcccccC-----Cch-h----hCC------cEEEeecceee-cCCcceEeEEEE--cCHHHHHH
Confidence            99999999999999998654322     111 1    111      35578999999 568888755443  67777777


Q ss_pred             HHHhhh
Q psy13922        264 LHKSIS  269 (509)
Q Consensus       264 l~~~~~  269 (509)
                      +.....
T Consensus       230 ~~~~~~  235 (390)
T PRK08133        230 VFGFLR  235 (390)
T ss_pred             HHHHHH
Confidence            664433

>PRK06460 hypothetical protein; Provisional

Probab=99.88  E-value=2.7e-20  Score=191.69  Aligned_cols=217  Identities=12%  Similarity=0.140  Sum_probs=153.5

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCC----ChhHHHHHHhcCCEE
Q psy13922         53 PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQ----YPLYSASLAEFNMEQ  128 (509)
Q Consensus        53 ~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~----y~~~~~~~~~~g~~~  128 (509)
                      ....+|+++++++++      . ...+++ +++++++..++.+++++||    +|+++.|.    |..+...++..|+++
T Consensus        45 p~~~~L~~~lA~l~g------~-~~~v~~-~sG~~ai~~~l~al~~~Gd----~Vl~~~~~~~~ty~~~~~~~~~~G~~v  112 (376)
T PRK06460         45 PTVLELTKKIVELEN------A-EMGVAF-SSGMGAISTTALALLKPGN----SVLVHRDMFGRSYRFFTDYLKNWGVNV  112 (376)
T ss_pred             ccHHHHHHHHHHHhC------C-CcEEEe-CCHHHHHHHHHHHHhCCCC----EEEEecCCcCcHHHHHHHHHHhhCcEE
Confidence            456889999999983      1 234555 4456899999999999998    99998764    445567778889998


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC
Q psy13922        129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG  208 (509)
Q Consensus       129 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~  208 (509)
                      ..++.++       .+.+++.+++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+..   
T Consensus       113 ~~~~~~~-------~~~l~~~~~~-----~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~~---  174 (376)
T PRK06460        113 DASNPGS-------DNIIEKAKSK-----RYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPIN---  174 (376)
T ss_pred             EEECCCC-------HHHHHHhcCC-----CceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcccc---
Confidence            8876542       2334443333     7999999999999999999   56788899999999999999975321   


Q ss_pred             CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCC
Q psy13922        209 SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD  288 (509)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  288 (509)
                        ..++     +      ....++++|+||.++|..|+++||++   +++++++++.+.+..+......           
T Consensus       175 --~~~l-----~------~~~divv~S~sK~l~G~~~~~~G~~~---~~~~l~~~l~~~~~~~g~~~~~-----------  227 (376)
T PRK06460        175 --QKPL-----E------LGADIVVHSASKFLAGHNDVIAGLAA---GYGKLLNVIDQMRRTLGTSLDP-----------  227 (376)
T ss_pred             --CChh-----h------cCCCEEEeecceeccCCCCceEEEEe---cCHHHHHHHHHHHHhcCCCCCH-----------
Confidence              1111     0      01257788999999654457899998   7899999998766533221111           


Q ss_pred             CCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy13922        289 PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS  362 (509)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  362 (509)
                                              ..+.. ++           +..++++..++.+.++++.+.+.|++.|.+.
T Consensus       228 ------------------------~~a~~-~l-----------~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~  265 (376)
T PRK06460        228 ------------------------HAAYL-TL-----------RGIKTLKIRMDVINRNAEQIAEFLEGHPKVV  265 (376)
T ss_pred             ------------------------HHHHH-HH-----------hchhhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence                                    11111 10           1223467778888999999999999877654

>KOG1412|consensus

Probab=99.88  E-value=9.2e-21  Score=179.14  Aligned_cols=320  Identities=18%  Similarity=0.237  Sum_probs=234.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE--EEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV--ILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|++-|.|.++-...-.+  ......|-|..|++.++.+.++.+-......+..+.+  +-+-++|.|+......|..-
T Consensus        45 g~PWvLPvVk~~e~~i~~d--~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~  122 (410)
T KOG1412|consen   45 GKPWVLPVVKKAEKKIAND--QSLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATF  122 (410)
T ss_pred             CCeeEehhhhhhhhhccCc--hhccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHh
Confidence            6777777776665554444  1233349999999999999999886443333444554  33456677887777666432


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCC-EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceE-EEEeCC-CCCCCCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNM-EQIGYYLDESKQWGLPISELERSITEARKHCNPRA-IVIINP-GNPTGQVLT  176 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~-ivi~~p-~NPtG~~~s  176 (509)
                      -.  +.+|.++.|+|..+...++..|+ ++..++..+..+-.+|++.+...++..    ..+. ++++.+ |||||.-.+
T Consensus       123 ~~--~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A----Pe~si~iLhaCAhNPTGmDPT  196 (410)
T KOG1412|consen  123 YN--KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESA----PEGSIIILHACAHNPTGMDPT  196 (410)
T ss_pred             cc--cceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhC----CCCcEEeeeccccCCCCCCCC
Confidence            11  23799999999999999999994 566666655556689999999999885    3444 445655 999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccH-HHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF-KKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      +|+|.+|++..++.+.+.+.|-+|.+|.-++. ...+. ..+..+-     +..++++-||+|.+ |+.+-|+|-+.++.
T Consensus       197 ~EQW~qia~vik~k~lf~fFDiAYQGfASGD~-~~DawAiR~fV~~-----g~e~fv~QSFaKNf-GlYneRvGnltvv~  269 (410)
T KOG1412|consen  197 REQWKQIADVIKSKNLFPFFDIAYQGFASGDL-DADAWAIRYFVEQ-----GFELFVCQSFAKNF-GLYNERVGNLTVVV  269 (410)
T ss_pred             HHHHHHHHHHHHhcCceeeeehhhcccccCCc-cccHHHHHHHHhc-----CCeEEEEhhhhhhc-ccccccccceEEEe
Confidence            99999999999999999999999999987642 22222 1222222     33488899999999 99999999999888


Q ss_pred             CCHHHHHHHHHh-----hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        256 LDPGVKAMLHKS-----ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       256 ~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      .++..+..+..-     ++.+++|+..|..++..+|..|++                                      .
T Consensus       270 ~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~l--------------------------------------r  311 (410)
T KOG1412|consen  270 NNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPEL--------------------------------------R  311 (410)
T ss_pred             cChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHH--------------------------------------H
Confidence            888877666432     336778888855554444444332                                      4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSI--EG-MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                      ++|...+..+-.++++.|..|.+.|..+  || |..+..+.|+|.+-               |+++..  +..+.+.+.|
T Consensus       312 e~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyT---------------GLtp~q--V~~li~~h~v  374 (410)
T KOG1412|consen  312 EQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYT---------------GLTPAQ--VDHLIENHKV  374 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeec---------------CCCHHH--HHHHHHhceE
Confidence            7777778899999999999999999886  55 55667788999873               555554  6889999999


Q ss_pred             EEec
Q psy13922        408 CIVP  411 (509)
Q Consensus       408 ~v~p  411 (509)
                      ++.+
T Consensus       375 yLl~  378 (410)
T KOG1412|consen  375 YLLS  378 (410)
T ss_pred             EEec
Confidence            9985

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.88  E-value=6.6e-21  Score=198.65  Aligned_cols=329  Identities=13%  Similarity=0.161  Sum_probs=207.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV----DG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g----d~  102 (509)
                      .|.|.+++.+++.+..... ..|. .....++.+.++++.        ..+.+++++++++|+..+++......    ..
T Consensus        57 ~p~v~~A~~~~~~~~~~~~-~~~~-~~~~~~la~~l~~~~--------~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~  126 (406)
T PRK12381         57 HPALREALNEQASKFWHTG-NGYT-NEPVLRLAKKLIDAT--------FADRVFFCNSGAEANEAALKLARKYAHDRYGS  126 (406)
T ss_pred             CHHHHHHHHHHHhhccccc-CccC-CHHHHHHHHHHHhhC--------CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCC
Confidence            6899999999988632111 1132 111234555555432        24699999999999999999875321    11


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEE-E---EecCC--CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC-
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQI-G---YYLDE--SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL-  175 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~--~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~-  175 (509)
                      .+..|+....+|++....+...+.... .   .+..+  ..-...|++.+++.+.+     ++++|++ .|.|++|-++ 
T Consensus       127 ~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~aavii-EPv~~~gg~~~  200 (406)
T PRK12381        127 HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-----QTCAVIV-EPIQGEGGVIP  200 (406)
T ss_pred             CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC-----CeeEEEE-eCCcCCCCCcC
Confidence            245799999999998755444332110 0   01100  00012478999988865     6888777 5889998644 


Q ss_pred             -CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        176 -TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       176 -s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                       +++.+++|.++|++||+++|+||+|.++.+++.  +.+...  .++.+     +   +.|+||.+ | +|+|+||++  
T Consensus       201 ~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~--~~~~~~--~~v~p-----D---i~t~sK~l-~-gG~~ig~~~--  264 (406)
T PRK12381        201 ADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYMH--YGVTP-----D---VLTTAKAL-G-GGFPIGAML--  264 (406)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc--hhhhHh--hCCCC-----C---EEEehhhh-h-CCCceEEEE--
Confidence             799999999999999999999999988866542  222111  11211     1   34889999 5 899999998  


Q ss_pred             cCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHH
Q psy13922        255 NLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  333 (509)
                       .++++++.+..... .+.+.+.+++.+                              +.+++..+ .            
T Consensus       265 -~~~~~~~~~~~~~~~~t~~~~pl~~aa------------------------------a~a~l~~l-~------------  300 (406)
T PRK12381        265 -TTEKCASVMTVGTHGTTYGGNPLASAV------------------------------AGKVLELI-N------------  300 (406)
T ss_pred             -EcHHHHhhcCCCCCCCCCCCCHHHHHH------------------------------HHHHHHHH-h------------
Confidence             78899988865332 233445552222                              22222221 1            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-CCee-c-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        334 SREKQSVLDSLKQRAKMVADTFNSIE-GMSC-N-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                         ...+++.++++.+++.+.|+++. ...+ . ....|.++++.+..+.           ......+...+.++||.+.
T Consensus       301 ---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~-----------~~~~~~~~~~l~~~Gv~v~  366 (406)
T PRK12381        301 ---TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEY-----------AGKAKQISQEAAKAGVMVL  366 (406)
T ss_pred             ---hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCch-----------hhHHHHHHHHHHHCCcEEe
Confidence               23456777777777777777651 1221 1 2234677776654211           0011224566777899987


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPE  488 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~  488 (509)
                      ++.                                                    +.          ++|+++.  .+++
T Consensus       367 ~~g----------------------------------------------------~~----------~lRl~p~~~~t~~  384 (406)
T PRK12381        367 IAG----------------------------------------------------PN----------VVRFAPALNISEE  384 (406)
T ss_pred             eCC----------------------------------------------------CC----------EEEEeCCccCCHH
Confidence            521                                                    11          7888766  8999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy13922        489 KLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       489 ~i~~~~~~l~~~~~~~~~~  507 (509)
                      +|++++++|.++++++.++
T Consensus       385 ~i~~~~~~l~~~l~~~~~~  403 (406)
T PRK12381        385 EITTGLDRFARACERFVSR  403 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999887654

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.88  E-value=3.6e-20  Score=190.98  Aligned_cols=179  Identities=16%  Similarity=0.184  Sum_probs=139.5

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh-
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE-  123 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~-  123 (509)
                      .+++|+.+. ...|++.++++.+        .+++++|+|+++|+..++.+++++||    +|+++.|+|.+....+.. 
T Consensus        44 ~Y~R~~~p~-~~~le~~lA~l~g--------~~~v~~~~gg~~Ai~~~l~all~~GD----~Vl~~~p~y~~~~~~~~~~  110 (382)
T TIGR02080        44 DYSRSGNPT-RDLLQQALAELEG--------GAGAVVTNTGMSAIHLVTTALLGPDD----LLVAPHDCYGGTYRLLNAL  110 (382)
T ss_pred             cccCCCCch-HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCC----EEEEcCCCcHHHHHHHHHH
Confidence            466676543 3789999999873        36899999999999999999999998    999999999975544332 


Q ss_pred             ---cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        124 ---FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       124 ---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                         .+.++..++       ..|++.+++++++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|
T Consensus       111 ~~~~~~~v~~~d-------~~d~~~l~~ai~~-----~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~  175 (382)
T TIGR02080       111 AKKGCFRVLFVD-------QGDEQALRAALAQ-----KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTF  175 (382)
T ss_pred             HhhcCeEEEEEC-------CCCHHHHHHhcCc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCC
Confidence               345555443       2378999999876     7999999999999999988   778888999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ..+...     .++ .    .+.      .++++|+||.+.|.+|++.|++++  .++++++++...+.
T Consensus       176 ~~~~~~-----~pl-~----~ga------Divv~S~sK~l~G~~~~~~G~i~~--~~~~~~~~l~~~~~  226 (382)
T TIGR02080       176 LSPALQ-----NPL-A----LGA------DLVLHSCTKYLNGHSDVIAGAVIA--KDPQVAEELAWWAN  226 (382)
T ss_pred             cccccC-----Cch-h----hCC------CEEEeecceeccCCCCceeEEEEe--CCHHHHHHHHHHHH
Confidence            765432     121 1    111      366789999996678899999863  67888888876655

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=7.3e-20  Score=188.83  Aligned_cols=225  Identities=13%  Similarity=0.154  Sum_probs=164.0

Q ss_pred             CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH-
Q psy13922         44 QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA-  122 (509)
Q Consensus        44 ~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~-  122 (509)
                      ..+++|+.+. ...|++++|++++        .+++++++|+++++..++.+++++||    +|+++.|+|.+....+. 
T Consensus        44 ~~Y~R~~~pt-~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~~~GD----~Vl~~~~~y~~~~~~~~~  110 (386)
T PRK08045         44 HDYSRRGNPT-RDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRLFDS  110 (386)
T ss_pred             ceeeCCCCcc-HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCC----EEEEcCCCcHHHHHHHHH
Confidence            3466676554 4789999999873        24699999999999999999999998    99999999996444333 


Q ss_pred             ---hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccc
Q psy13922        123 ---EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV  199 (509)
Q Consensus       123 ---~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Dea  199 (509)
                         ..|.++..++       ..|++.+++.+++     ++++|++++|+||||.+++   +++|.++|+++|+++|+|++
T Consensus       111 ~~~~~gi~v~~vd-------~~d~e~l~~~l~~-----~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDea  175 (386)
T PRK08045        111 LAKRGCYRVLFVD-------QGDEQALRAALAE-----KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNT  175 (386)
T ss_pred             HHhhCCeEEEEeC-------CCCHHHHHHhccc-----CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECC
Confidence               2344665543       3488999998876     7999999999999999998   78888889999999999999


Q ss_pred             CCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhh
Q psy13922        200 YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLA  278 (509)
Q Consensus       200 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~  278 (509)
                      |......     .++ ..         ..+ ++++|+||.++|.++++.|+++.  .++++.+.+...... ..+.+.. 
T Consensus       176 y~~~~~~-----~pl-~~---------gaD-ivv~S~tK~l~G~~d~~~G~vi~--~~~~~~~~l~~~~~~~g~~~~p~-  236 (386)
T PRK08045        176 FLSPALQ-----NPL-AL---------GAD-LVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAF-  236 (386)
T ss_pred             CCccccC-----Cch-hh---------CCC-EEEeecceeccCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHH-
Confidence            9764321     122 11         112 56889999997778889999863  578888888755442 2233333 


Q ss_pred             hhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13922        279 LVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI  358 (509)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  358 (509)
                                                       .+..+...++              .+....+...+++..+.+.|+..
T Consensus       237 ---------------------------------~~~l~~rgl~--------------tl~~R~~~~~~na~~la~~L~~~  269 (386)
T PRK08045        237 ---------------------------------DSYLLLRGLR--------------TLVPRMELAQRNAQAIVKYLQTQ  269 (386)
T ss_pred             ---------------------------------HHHHHHhhhc--------------cHHHHHHHHHHHHHHHHHHHHcC
Confidence                                             1222111111              16667778888888889999887


Q ss_pred             CCCe
Q psy13922        359 EGMS  362 (509)
Q Consensus       359 ~g~~  362 (509)
                      |.+.
T Consensus       270 p~v~  273 (386)
T PRK08045        270 PLVK  273 (386)
T ss_pred             CCEe
Confidence            7654

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.88  E-value=7.9e-20  Score=188.53  Aligned_cols=326  Identities=13%  Similarity=0.151  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc------CCCC
Q psy13922         29 DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE------DVDG  102 (509)
Q Consensus        29 ~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~gd~  102 (509)
                      .+.+++...+.... +....|+   |..++.+.+.+.+.+.+|  ++++++++++|+++++..++.++..      +|+ 
T Consensus        35 ~~~~a~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-  107 (373)
T TIGR03812        35 IAVKAYDMFIETNL-GDPGLFP---GTKKIEEEVVGSLGNLLH--LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTP-  107 (373)
T ss_pred             HHHHHHHHHhhcCC-CCcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCc-
Confidence            45667766655422 2222243   223333444444444435  4567888999999999888777652      445 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                         .|+++.++|.++...++..|++++.++.++  ++.+|++.+++.+++     ++..+++..|+||||...+   +++
T Consensus       108 ---~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~l~~-----~~~~vv~~~~~~~tG~~~~---~~~  174 (373)
T TIGR03812       108 ---NIIVPESAHFSFEKAAEMLGLELRYAPLDE--DYTVDVKDVEDLIDD-----NTIGIVGIAGTTELGQIDD---IEE  174 (373)
T ss_pred             ---EEEECCcchHHHHHHHHHcCCeEEEEeeCC--CCCcCHHHHHHHHhh-----CcEEEEEECCCCCCCccCC---HHH
Confidence               999999999999999999999999999864  357899999999977     5655555558999999976   888


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCC---CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEG---SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      |.++|+++|+++|+|++|..+...-.   .....+ .+  ..    ...+++.+ |.+| + |+++.|.|++++  .+++
T Consensus       175 i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~-d~--~~----~~~d~~~~-s~~K-~-~~~~~~~G~~~~--~~~~  242 (373)
T TIGR03812       175 LSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPF-DF--SL----PGVQSITI-DPHK-M-GLSPIPAGGILF--RSKS  242 (373)
T ss_pred             HHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCc-cc--cC----CCCCEEEE-Cccc-c-CCCcCCceEEEE--eCHH
Confidence            89999999999999999986542100   000000 00  00    01224433 6789 5 567888887764  6788


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+... ..+.....-           ..+             .|+.......++..+++        + -..+.+++
T Consensus       243 ~~~~l~~~-~~~~~~~~~-----------~~~-------------~gt~~~~~~~~~~~~l~--------~-l~~~g~~~  288 (373)
T TIGR03812       243 YLKYLSVD-APYLTVKKQ-----------ATI-------------TGTRSGASAAATYAVIK--------Y-LGREGYRK  288 (373)
T ss_pred             HHhhhccc-CcccCCCCC-----------cce-------------EeechhHHHHHHHHHHH--------H-hCHHHHHH
Confidence            88776421 111111000           000             00000002222222221        0 01123567


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ..+.+.++++++.+.|+++ ++. +..+..++.. +.++  .             ... +...|.++||.+.++.   . 
T Consensus       289 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~-~~~~--~-------------~~~-v~~~L~~~gi~v~~~~---~-  346 (373)
T TIGR03812       289 IVAECMENTRYLVEELKKI-GFEPVIEPVLNIVA-FEVD--D-------------PEE-VRKKLRDRGWYVSVTR---C-  346 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEE-EEeC--C-------------HHH-HHHHHHHCCceeccCC---C-
Confidence            7888999999999999998 554 4455555443 3332  1             223 4455666799987532   1 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     +.          ++|+++.  +++++++.+++.
T Consensus       347 -----------------------------------------------~~----------~iRis~~~~~t~edid~l~~~  369 (373)
T TIGR03812       347 -----------------------------------------------PK----------ALRIVVMPHVTREHIEEFLED  369 (373)
T ss_pred             -----------------------------------------------CC----------EEEEEEECCCCHHHHHHHHHH
Confidence                                                           22          8999988  799999999998


Q ss_pred             HHH
Q psy13922        497 FRE  499 (509)
Q Consensus       497 l~~  499 (509)
                      |++
T Consensus       370 L~~  372 (373)
T TIGR03812       370 LKE  372 (373)
T ss_pred             Hhh
Confidence            875

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=9.3e-20  Score=189.12  Aligned_cols=223  Identities=17%  Similarity=0.194  Sum_probs=159.0

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH----HHHH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY----SASL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~----~~~~  121 (509)
                      +.+|+.+. ...|++.+++++    |   ..+. ++++++++++.+++.++.++||    +|+++.|+|.+.    ...+
T Consensus        54 y~R~~~p~-~~~Le~~lA~l~----g---~~~~-v~~~sG~~Ai~~~l~all~pGD----~Vvv~~p~Y~~t~~~~~~~~  120 (405)
T PRK08776         54 YTRSGNPT-RDLLGEALAELE----G---GAGG-VITATGMGAINLVLNALLQPGD----TLVVPHDAYGGSWRLFNALA  120 (405)
T ss_pred             ccCCCChH-HHHHHHHHHHHh----C---CCce-EEEcCHHHHHHHHHHHHhCCCC----EEEEccCCchHHHHHHHHHH
Confidence            44444333 366778888776    3   1234 5555567999999999999998    999999999873    3445


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      +..|.+++.++.       .|++.+++.+++     ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.
T Consensus       121 ~~~g~~v~~v~~-------~d~~~l~~~i~~-----~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a  185 (405)
T PRK08776        121 KKGHFALITADL-------TDPRSLADALAQ-----SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFL  185 (405)
T ss_pred             HhcCcEEEEECC-------CCHHHHHHhcCc-----CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCc
Confidence            566888888764       378999988876     7999999999999999855   8999999999999999999997


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALV  280 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~  280 (509)
                      ....     +.++ .    .+     . -++++|.||.++|.+++..|+++.  .++++.+++...... ....+.+   
T Consensus       186 ~~~~-----~~pl-~----~g-----a-Divv~S~tK~l~g~~~~~~G~vv~--~~~~l~~~l~~~~~~~g~~~s~~---  244 (405)
T PRK08776        186 SPAL-----QKPL-E----FG-----A-DLVLHSTTKYINGHSDVVGGAVVA--RDAELHQQLVWWANALGLTGSPF---  244 (405)
T ss_pred             cccc-----CCcc-c----cc-----C-CEEEecCceeecCCCCceEEEEEe--CCHHHHHHHHHHHHhcCCCCCHH---
Confidence            5321     1222 1    11     1 256779999996555688898863  678888888655442 2223333   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                                     ...++.              +..++++...+...++...+.+.|++.|.
T Consensus       245 -------------------------------~a~l~~--------------~gl~tl~~r~~~~~~na~~la~~L~~~p~  279 (405)
T PRK08776        245 -------------------------------DAFLTL--------------RGLRTLDARLRVHQENADAIAALLDGHAA  279 (405)
T ss_pred             -------------------------------HHHHHH--------------hhhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                                           111111              12334778888889999999999998776


Q ss_pred             Ce
Q psy13922        361 MS  362 (509)
Q Consensus       361 ~~  362 (509)
                      +.
T Consensus       280 v~  281 (405)
T PRK08776        280 VN  281 (405)
T ss_pred             ee
Confidence            54

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.88  E-value=8.3e-21  Score=194.48  Aligned_cols=310  Identities=17%  Similarity=0.159  Sum_probs=192.1

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcc---cCCCC--cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVG---SYTDS--PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~---~Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      ...+|+.+++++.+.+.........   .++..  .-..++|+.+++++    |  .++++|++|+|++++++.++..+.
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~~~g~t~a~~~~l~~l~   80 (353)
T TIGR03235         7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL----G--ADTEEVIFTSGATESNNLAILGLA   80 (353)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHH
Confidence            3456889999998888652111111   01111  12356777777777    3  567899999999999999999887


Q ss_pred             cCCCCCC-CeEEEcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         98 EDVDGKK-PGVLIPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        98 ~~gd~~~-~~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      ..+++++ +.|++....|..+..   .++..|++++.++.+++  +.+|++.+++.+++     ++++|++++++||||.
T Consensus        81 ~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~l~~~l~~-----~~~lv~~~~~~n~tG~  153 (353)
T TIGR03235        81 RAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDES--GRIDVDELADAIRP-----DTLLVSIMHVNNETGS  153 (353)
T ss_pred             HhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCC--CcCCHHHHHHhCCC-----CCEEEEEEcccCCcee
Confidence            5432122 478888777766543   34567999999988753  47899999999876     7899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +++   +++|.++|+++|+++|+|++++.....     ..+..    .     ..+++++ |.+|.+ |++|  +|++++
T Consensus       154 ~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~-----~~~~~----~-----~~D~~~~-s~~K~~-gp~g--~g~l~~  212 (353)
T TIGR03235       154 IQP---IREIAEVLEAHEAFFHVDAAQVVGKIT-----VDLSA----D-----RIDLISC-SGHKIY-GPKG--IGALVI  212 (353)
T ss_pred             ccC---HHHHHHHHHHcCCEEEEEchhhcCCcc-----ccccc----c-----CCCEEEe-ehhhcC-CCCc--eEEEEE
Confidence            988   899999999999999999998753221     11111    0     2335544 779988 7666  677763


Q ss_pred             ecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHH
Q psy13922        254 INLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  333 (509)
                         +++...... ......+...      ..                 .+..++.......++..+++          ..
T Consensus       213 ---~~~~~~~~~-~~~~~~~~~~------~~-----------------~~~~gt~~~~~~~al~~al~----------~~  255 (353)
T TIGR03235       213 ---RKRGKPKAP-LKPIMFGGGQ------ER-----------------GLRPGTLPVHLIVGMGEAAE----------IA  255 (353)
T ss_pred             ---ccCcccccc-cCceeeCCCC------cC-----------------ccccCCCChHHHHHHHHHHH----------HH
Confidence               343322110 0000000000      00                 00111111113333333332          12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        334 SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      .+..+..+++++++.+.+.+.|.+ +|+++..+. .....++.+.+|          ++ +.++ +...|++ +|.+.+|
T Consensus       256 ~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~----------~~-~~~~-v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       256 RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSID----------GV-NSEA-LIVNLRA-DAAVSTG  321 (353)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeC----------Cc-CHHH-HHHHHhC-CeEEEch
Confidence            223677888999999999999988 588876332 221112222211          22 1233 4566665 8999999


Q ss_pred             CCCCC
Q psy13922        413 AGFGQ  417 (509)
Q Consensus       413 ~~f~~  417 (509)
                      ..|+.
T Consensus       322 ~~~~~  326 (353)
T TIGR03235       322 SACSS  326 (353)
T ss_pred             hhcCC
Confidence            98876

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.87  E-value=6.9e-20  Score=191.88  Aligned_cols=301  Identities=15%  Similarity=0.134  Sum_probs=184.0

Q ss_pred             CCCCCCHHHHHHHHHHHhccc--CCCcccC-CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCR--GQSVGSY-TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~--~~~~~~Y-~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+.+|+.|++++...+....  +.....| ....-...+.+...+.+.+.+|.  +..+|++++| ++++..++.++++
T Consensus        33 ~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~i~~~sg-t~al~~~l~~l~~  109 (416)
T PRK00011         33 SENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYANVQPHSG-SQANAAVYFALLK  109 (416)
T ss_pred             ccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceeeecCCc-hHHHHHHHHHhcC
Confidence            444478999999877654311  1111112 11111222322122244444453  3455766665 6799999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHH-----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSA-----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      +||    +|+++.|+|.++..     .+...|++++.++.+++ ++.+|++.+++.++..    ++++|++++++|+  .
T Consensus       110 ~gd----~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~----~~k~v~~~~~~~~--~  178 (416)
T PRK00011        110 PGD----TILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEE-TGLIDYDEVEKLALEH----KPKLIIAGASAYS--R  178 (416)
T ss_pred             CCC----EEEEeccccCCccccccccccccceeeEeecCcCcc-cCCcCHHHHHHHHHhc----CCCEEEECCCcCC--C
Confidence            998    99999999976532     12344678888877643 4689999999999753    6889888766554  3


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ..+   +++|.++|+++|+++|+|++|.......+.....+.           .. .++++|+||.+   +|.|+||++.
T Consensus       179 ~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-----------~~-di~~~S~~K~l---~g~~gg~i~~  240 (416)
T PRK00011        179 PID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-----------HA-DVVTTTTHKTL---RGPRGGLILT  240 (416)
T ss_pred             ccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-----------CC-cEEEecCCcCC---CCCCceEEEe
Confidence            434   899999999999999999998532211110111110           11 24577999976   5789999983


Q ss_pred             ecCCHHHHHHHHHhhhccc-C-cchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        254 INLDPGVKAMLHKSISAML-C-PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                        .++++++.+......+. + +...                                  ...++..++.         .
T Consensus       241 --~~~~~~~~l~~~~~~~~~~~~~~~----------------------------------~~aa~~~a~~---------~  275 (416)
T PRK00011        241 --NDEELAKKINSAVFPGIQGGPLMH----------------------------------VIAAKAVAFK---------E  275 (416)
T ss_pred             --CCHHHHHHHHHHhCccccCCccHH----------------------------------HHHHHHHHHH---------H
Confidence              45789998876554221 1 1111                                  1111111110         1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      ...+++++.++.++++++++.+.|++. |+++.+ ...+.++|+.+.- .         ++ +... +...|+++||.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~-~---------~~-~~~~-~~~~L~~~GI~v~  342 (416)
T PRK00011        276 ALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRS-K---------GL-TGKE-AEAALEEANITVN  342 (416)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcc-c---------CC-CHHH-HHHHHHHcCcEEc
Confidence            111235778888999999999999987 777653 1224777776641 0         11 1233 4667788999997


Q ss_pred             cC
Q psy13922        411 PG  412 (509)
Q Consensus       411 pg  412 (509)
                      .+
T Consensus       343 ~~  344 (416)
T PRK00011        343 KN  344 (416)
T ss_pred             cC
Confidence            54

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.87  E-value=7e-20  Score=188.07  Aligned_cols=175  Identities=17%  Similarity=0.201  Sum_probs=131.3

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH---
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL---  121 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~---  121 (509)
                      .+++|+. .....|++++++++         .+++++++++++++..++.+++++||    +|+++.|.|.++...+   
T Consensus        44 ~y~ry~~-p~~~~Le~~lA~l~---------~~~~v~~~sG~~Ai~~~l~all~~Gd----~Vl~~~~~y~~~~~~~~~~  109 (366)
T PRK07582         44 TYGRASN-PTWRALEAALGELE---------GAEALVFPSGMAAITAVLRALLRPGD----TVVVPADGYYQVRALAREY  109 (366)
T ss_pred             eeECCCC-ccHHHHHHHHHHHc---------CCCEEEECCHHHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHHHHHH
Confidence            3565654 45688999999886         13456666667899999999999998    9999999998876644   


Q ss_pred             -HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        122 -AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       122 -~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                       ...|++++.++.++.      .+    .+..     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|
T Consensus       110 l~~~G~~v~~v~~~~~------~~----~~~~-----~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~  171 (366)
T PRK07582        110 LAPLGVTVREAPTAGM------AE----AALA-----GADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTT  171 (366)
T ss_pred             HhcCeEEEEEECCCCh------HH----Hhcc-----CceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCC
Confidence             457999999886532      11    1223     6899999999999998765   999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ....  +   ..++ +    .+     . -++++|+||.++|.+|+++||++.  .++++++.+...+.
T Consensus       172 ~~~~--~---~~p~-~----~g-----~-Divv~S~sK~l~G~~g~~~G~v~~--~~~~l~~~l~~~~~  222 (366)
T PRK07582        172 ATPL--G---QRPL-E----LG-----A-DLVVASDTKALTGHSDLLLGYVAG--RDPELMAAVERWRL  222 (366)
T ss_pred             CCcc--c---cCch-h----cC-----C-cEEEecccccccCCCCeeEEEEEc--CcHHHHHHHHHHHH
Confidence            6421  1   1121 1    11     1 256789999997778899999973  46888888876655

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.87  E-value=6.9e-20  Score=190.25  Aligned_cols=174  Identities=17%  Similarity=0.193  Sum_probs=138.2

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----H
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----L  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~  121 (509)
                      +.+| +..+..+|+++++++++        .+++++++|+++|+..++.+++++||    +|+++.|.|..+...    +
T Consensus        58 Y~r~-~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll~~Gd----~Vl~~~~~y~~~~~~~~~~~  124 (400)
T PRK06234         58 YSRL-GNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSALKAGD----HVVASDTLYGCTFALLNHGL  124 (400)
T ss_pred             ccCC-CCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCC----EEEEecCccchHHHHHHHHH
Confidence            4434 45567999999999983        24688899999999999999999998    999999988765543    4


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC--CcEEEEccc
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE--KLFLFADEV  199 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~--~i~lI~Dea  199 (509)
                      +..|++++.++..       |++++++.+++     ++++|++++|+||||.+.+   +++|+++|+++  |+++|+|++
T Consensus       125 ~~~G~~v~~vd~~-------d~e~l~~~i~~-----~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea  189 (400)
T PRK06234        125 TRYGVEVTFVDTS-------NLEEVRNALKA-----NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNT  189 (400)
T ss_pred             hhCCeEEEEECCC-------CHHHHHHHhcc-----CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECC
Confidence            6689999988643       78999999987     7999999999999999987   88889999997  999999999


Q ss_pred             CCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHHHHHHh
Q psy13922        200 YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       200 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~~l~~~  267 (509)
                      |..+.+.     .++ ..    +      ..++++|+||.+ |.+|.++ ||++   .+++++++++..
T Consensus       190 ~~~~~~~-----~~l-~~----g------~Divv~S~sK~l-~g~g~~~gG~v~---~~~~~~~~l~~~  238 (400)
T PRK06234        190 FCTPYIQ-----RPL-QL----G------ADVVVHSATKYL-NGHGDVIAGFVV---GKEEFINQVKLF  238 (400)
T ss_pred             CCchhcC-----Cch-hh----C------CcEEEeeccccc-cCCCCceeEEEE---ecHHHHHHHHHH
Confidence            9875432     111 11    1      146688999999 5688765 8887   678888887653

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.87  E-value=4.2e-20  Score=192.26  Aligned_cols=202  Identities=17%  Similarity=0.154  Sum_probs=144.3

Q ss_pred             CCCCC-CHHHHHH-HHHHHhcccCCCcccCCC-----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCH-HHHHHHHH
Q psy13922         22 DDPRF-PDDVKQR-AQAVLDGCRGQSVGSYTD-----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGA-SDGIKSVL   93 (509)
Q Consensus        22 ~~~~~-p~~v~~a-~~~~l~~~~~~~~~~Y~~-----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~-~~al~~~~   93 (509)
                      +.|.+ +|.++.+ ..++  .   . ...|.+     ..|.+++++++++++.+.+|.  +.+++++++++ +++...+.
T Consensus        28 g~~~~~~p~~~~~~~~~~--~---~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~~~~~~   99 (398)
T cd00613          28 GTYKHNPPAVIKRNILEN--E---F-YTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDEATAAAEAAGL   99 (398)
T ss_pred             cccCCcCcHHHHHHhccc--c---C-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCchHHHHHHHHH
Confidence            66776 3444444 4444  2   1 223555     789999999999999998874  44467676644 44544555


Q ss_pred             HHhhcC--CCCCCCeEEEcCCCChhHHHHHHhcC----CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922         94 KLLIED--VDGKKPGVLIPIPQYPLYSASLAEFN----MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus        94 ~~l~~~--gd~~~~~Vlv~~p~y~~~~~~~~~~g----~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      .++..+  ||    .|+++.|.|..+...+...|    .+++.++.++.  +.+|++.+++.+.+     ++++|++++|
T Consensus       100 ~~~~~~~~gd----~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~-----~t~~viv~~~  168 (398)
T cd00613         100 AAIRAYHKRN----KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEG--GTVDLEALKEEVSE-----EVAALMVQYP  168 (398)
T ss_pred             HHHhcccCCC----EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCC--CCcCHHHHHHhcCC-----CeEEEEEECC
Confidence            555555  66    99999999999988887777    89999887643  47899999998876     7999999988


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC---C
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE---C  244 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~---~  244 (509)
                      + |+|.+.  +.+++|.++|+++|+++|+|+++......     ......    +     . .+++.|++|.+ +.   .
T Consensus       169 ~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~-----~~~~~~----~-----~-d~~~~s~~K~~-~p~g~G  229 (398)
T cd00613         169 N-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGL-----KPPGEY----G-----A-DIVVGNLQKTG-VPHGGG  229 (398)
T ss_pred             C-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCC-----CChHHc----C-----C-CEEEeeccccC-CCCCCC
Confidence            5 899984  45799999999999999999987543211     111111    1     1 35567999997 32   2


Q ss_pred             CCeeEEEeeecCCHHHHHHH
Q psy13922        245 GLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~~~l  264 (509)
                      |.++|+++   .++++++.+
T Consensus       230 gp~~g~l~---~~~~~~~~~  246 (398)
T cd00613         230 GPGAGFFA---VKKELVRFL  246 (398)
T ss_pred             CCceeEEE---EhhhhHhhC
Confidence            78899998   577777654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.87  E-value=6.1e-20  Score=194.02  Aligned_cols=169  Identities=16%  Similarity=0.176  Sum_probs=126.4

Q ss_pred             HHHHHH---HHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-cCCCCCCCeEEEcCCCChhHHHHHHh----cCCEEE
Q psy13922         58 IRRHVA---QYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLYSASLAE----FNMEQI  129 (509)
Q Consensus        58 lr~~va---~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~p~y~~~~~~~~~----~g~~~~  129 (509)
                      ++++++   +.+.+.+|  ++.+++++|+|+++++..++.++. .+++    .|+++.+.|..+...++.    .|.+++
T Consensus       110 ~~~~~~e~~~~la~l~g--~~~~~v~~~~g~t~~~~~~~~a~~~~~g~----~Vlv~~~~~~~~~~~~~~~~~~~G~~~~  183 (447)
T PRK00451        110 TLQAIFEYQTMICELTG--MDVANASMYDGATALAEAALMAVRITKRK----KVLVSGAVHPEYREVLKTYLKGQGIEVV  183 (447)
T ss_pred             HHHHHHHHHHHHHHHhC--CCcceEEecCcHHHHHHHHHHHHHhcCCC----EEEEeCccCHHHHHHHHHHHHhCCcEEE
Confidence            555555   44466667  456689999999999999988875 6777    999999999988877654    699999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE--cccCCcccccC
Q psy13922        130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA--DEVYQDNVYAE  207 (509)
Q Consensus       130 ~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~--Deay~~~~~~~  207 (509)
                      .++.+++   .+|++.|++.+++     ++++|++++| ||||.+.+   +++|.++|+++|+++|+  |.+...+.   
T Consensus       184 ~v~~~~~---~~d~~~l~~~i~~-----~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~---  248 (447)
T PRK00451        184 EVPYEDG---VTDLEALEAAVDD-----DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLL---  248 (447)
T ss_pred             EecCCCC---CCCHHHHHHhcCC-----CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccC---
Confidence            9998753   7899999999976     7999999999 89999965   99999999999999998  43321110   


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEE--EecccccCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASF--MSCSKGYMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i--~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                          ....    +.     +.++++.  ++|||.+ .++|.++||+.   .++++++.+
T Consensus       249 ----~~~~----~~-----~~D~~~~s~~k~~~~~-~~~Gpg~G~l~---~~~~~~~~~  290 (447)
T PRK00451        249 ----KPPG----EY-----GADIVVGEGQPLGIPL-SFGGPYLGFFA---TRKKLVRQM  290 (447)
T ss_pred             ----CCcc----cC-----CCCEEEECCCcCCCCC-CCCCCCchHHH---hhHHHHhhC
Confidence                0000    11     1123333  3678888 47899999997   577777765

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=3.4e-19  Score=183.49  Aligned_cols=179  Identities=13%  Similarity=0.124  Sum_probs=139.5

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----  120 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----  120 (509)
                      .+++|+.+. ...|++++|++.+        .+++++|+|+++++..++.+++++||    +|+++.|+|.+....    
T Consensus        46 ~Y~R~~npt-~~~Le~~lA~leg--------~e~ivvt~gg~~Ai~~~l~all~~Gd----~Il~~~~~y~~~~~~~~~~  112 (388)
T PRK08861         46 DYTRSGNPN-RGLLEQTLSELES--------GKGAVVTNCGTSALNLWVSALLGPDD----LIVAPHDCYGGTYRLFNTR  112 (388)
T ss_pred             cccCCCCch-HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCC----EEEEcCCchHHHHHHHHHH
Confidence            356666544 4789999999883        57999999999999999999999998    999999999865433    


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      ....|+++..++       ..|++.+++++++     ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|
T Consensus       113 ~~~~gi~v~~vd-------~~d~e~l~~~i~~-----~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~  177 (388)
T PRK08861        113 ANKGDFKVQFVD-------QSDAAALDAALAK-----KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTF  177 (388)
T ss_pred             HhcCCeEEEEEC-------CCCHHHHHHhcCc-----CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCc
Confidence            234577887774       2478999988876     7999999999999999998   778888999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ....+.     .++ .    .+     . -++++|++|.+.|..++..|+++.  .++++.++++..+.
T Consensus       178 ~~~~~~-----~pl-~----~G-----a-Divv~S~tK~l~G~~d~~gG~i~~--~~~~~~~~~~~~~~  228 (388)
T PRK08861        178 LTPVLQ-----KPL-E----LG-----A-DFVIHSTTKYINGHSDVIGGVLIT--KTKEHAEELAWWGN  228 (388)
T ss_pred             cccccC-----CCc-c----cC-----C-CEEEeecceeccCCCcceeEEEEe--cHHHHHHHHHHHHh
Confidence            864432     111 1    11     1 256779999997666788999863  46678777776555

>PLN02651 cysteine desulfurase

Probab=99.87  E-value=3.5e-20  Score=190.67  Aligned_cols=336  Identities=15%  Similarity=0.134  Sum_probs=210.5

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCc---ccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSV---GSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~---~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      ...+|+.+++++.+.+........   ..++.  ..-..++|+.+++++    |  .++++|++|+|++++++.++..+.
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~t~~~t~a~~~~l~~~~   81 (364)
T PLN02651          8 TTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----G--ADPKEIIFTSGATESNNLAIKGVM   81 (364)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHH
Confidence            345688999999888765211111   10111  112345667777766    4  457899999999999888877653


Q ss_pred             ----cCCCCCCCeEEEcCCCChhHHHH---HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         98 ----EDVDGKKPGVLIPIPQYPLYSAS---LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        98 ----~~gd~~~~~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                          ++|+    +|+++...|..+...   ++..|.+++.++.+++  +.+|++.+++.+++     +++++++++++||
T Consensus        82 ~~~~~~g~----~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~-----~t~lv~v~~~~n~  150 (364)
T PLN02651         82 HFYKDKKK----HVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSD--GLVDLDELAAAIRP-----DTALVSVMAVNNE  150 (364)
T ss_pred             HhccCCCC----EEEEcccccHHHHHHHHHHHhcCCEEEEEccCCC--CcCCHHHHHHhcCC-----CcEEEEEECCCCC
Confidence                4565    999998788765443   3456999999988643  47899999999987     7999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||..++   +++|.++|+++|+++++|.+++....     ...+..    .     +.+++++ |..|.+ |.+|  +|+
T Consensus       151 tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~-----~~~~~~----~-----~~D~~~~-s~hK~~-gp~G--~g~  209 (364)
T PLN02651        151 IGVIQP---VEEIGELCREKKVLFHTDAAQAVGKI-----PVDVDD----L-----GVDLMSI-SGHKIY-GPKG--VGA  209 (364)
T ss_pred             ceeccc---HHHHHHHHHHcCCEEEEEcchhhCCc-----ccCccc----C-----CCCEEEe-chhhhC-CCCc--eEE
Confidence            999988   88999999999999999999976321     111111    1     2235544 779976 6555  566


Q ss_pred             EeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      +.+   +++....+........ ..                         ..+..++.+..+..++..+++         
T Consensus       210 l~v---~~~~~~~l~p~~~g~~-~~-------------------------~~~~~GT~~~~~~~~l~~al~---------  251 (364)
T PLN02651        210 LYV---RRRPRVRLEPLMSGGG-QE-------------------------RGRRSGTENTPLVVGLGAACE---------  251 (364)
T ss_pred             EEE---cCCCCCCCCccccCCC-cc-------------------------CCccCCCccHHHHHHHHHHHH---------
Confidence            652   4433333321111000 00                         011223333335555555543         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCeeccCC------ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHh
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQ------GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLE  403 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~  403 (509)
                       ...+..+.++++.+++.+++.+.|.+ +|+++++.+.      .++.. +.++            |+. .++ +...|.
T Consensus       252 -~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~-~~~~------------~~~-~~~-~~~~L~  315 (364)
T PLN02651        252 -LAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLN-LSFA------------YVE-GES-LLMGLK  315 (364)
T ss_pred             -HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEE-EEeC------------CCC-HHH-HHHHhC
Confidence             22223577788888999999999885 6788877541      22333 2233            222 333 344455


Q ss_pred             hcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe
Q psy13922        404 RTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI  483 (509)
Q Consensus       404 ~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~  483 (509)
                      +  |.+..|..|..                               ..++...+++++|+......+        .+|+|+
T Consensus       316 ~--i~v~~g~~c~~-------------------------------~~~~~~~~~~~~g~~~~~~~~--------~vR~S~  354 (364)
T PLN02651        316 E--VAVSSGSACTS-------------------------------ASLEPSYVLRALGVPEEMAHG--------SLRLGV  354 (364)
T ss_pred             C--EEEEchhhcCC-------------------------------CCCCcCHHHHHcCCChHHhCc--------eEEEEc
Confidence            4  99998886655                               223333455555543211223        899999


Q ss_pred             e--cChHHHH
Q psy13922        484 L--PQPEKLK  491 (509)
Q Consensus       484 ~--~~~~~i~  491 (509)
                      .  +|++||+
T Consensus       355 ~~~~t~~did  364 (364)
T PLN02651        355 GRFTTEEEVD  364 (364)
T ss_pred             CCCCCHHHcC
Confidence            9  7888874

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.86  E-value=1.3e-19  Score=188.95  Aligned_cols=316  Identities=11%  Similarity=0.086  Sum_probs=200.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----VD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----gd  101 (509)
                      +|.+.+++.+++.....  ..++.......++.+.++++.    +    .+.+++++++++|+..+++.++..     |-
T Consensus        59 ~~~i~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~  128 (401)
T PRK00854         59 HPKILAAMVEQAGRLTL--TSRAFRNDQLAPLYEELAALT----G----SHKVLPMNSGAEAVETAIKAVRKWGYEVKGV  128 (401)
T ss_pred             CHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhhC----C----CCEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence            78899999999987321  111122233355666666654    3    358999999999999999998642     11


Q ss_pred             C-CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922        102 G-KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus       102 ~-~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      + .++.|++..-+|++....+...+.             .+..++       ..|++.|++.+.+     ++++|++++|
T Consensus       129 ~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~i~~-----~~~aii~e~~  196 (401)
T PRK00854        129 PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEAAITP-----NTVAFLVEPI  196 (401)
T ss_pred             CCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHHHHHhCC-----CeEEEEEccc
Confidence            1 134788888888886544433221             112221       2478999998876     7999999999


Q ss_pred             CCCCCCCCC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-
Q psy13922        168 GNPTGQVLT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-  245 (509)
Q Consensus       168 ~NPtG~~~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-  245 (509)
                      +||+|.+++ ++++++|.++|++||+++|+||+|..+...+.  .  +..-..+..+     ++++   +||.++  .| 
T Consensus       197 ~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~--~--~~~~~~g~~~-----D~~~---~~K~l~--gg~  262 (401)
T PRK00854        197 QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK--L--LAEEHEGIEA-----DVTL---IGKALS--GGF  262 (401)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch--H--hHHhhcCCCC-----CEEE---eccccc--CCc
Confidence            999999887 55699999999999999999999987755431  1  1110111111     2443   479995  45 


Q ss_pred             CeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        246 LRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      +|+||++   .++++++.+..... ...+.+.+                                  .+++....++   
T Consensus       263 ~~ig~v~---~~~~~~~~l~~~~~~~t~~~~~~----------------------------------~~aa~~a~L~---  302 (401)
T PRK00854        263 YPVSAVL---SNSEVLGVLKPGQHGSTFGGNPL----------------------------------ACAVARAALK---  302 (401)
T ss_pred             cCeEEEE---EcHHHHhcccCCCCCCCCCcCHH----------------------------------HHHHHHHHHH---
Confidence            7999998   78888887764322 22234444                                  2222222211   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHH
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG--MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELL  402 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll  402 (509)
                              ..+ .+.+.+.++++.+++.+.|+++..  +....+.|.++.+ .+..+.           .....++..+ 
T Consensus       303 --------~l~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i-~~~~~~-----------~~~~~~~~~L-  360 (401)
T PRK00854        303 --------VLT-EEGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAV-ELEPEA-----------GGARQYCEAL-  360 (401)
T ss_pred             --------HHH-HcCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEE-EEecCc-----------hhHHHHHHHH-
Confidence                    111 122567777888888888887622  1122345555554 232110           1234444444 


Q ss_pred             hhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE
Q psy13922        403 ERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT  482 (509)
Q Consensus       403 ~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls  482 (509)
                      .++||.+.+.                                                      +..        ++|++
T Consensus       361 ~~~GV~v~~~------------------------------------------------------~~~--------~lR~~  378 (401)
T PRK00854        361 KERGLLAKDT------------------------------------------------------HDH--------TIRLA  378 (401)
T ss_pred             HHCCeEEecC------------------------------------------------------CCC--------EEEEe
Confidence            4569998641                                                      112        89999


Q ss_pred             e--ecChHHHHHHHHHHHHHHH
Q psy13922        483 I--LPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       483 ~--~~~~~~i~~~~~~l~~~~~  502 (509)
                      +  .+++++|++++++|++++.
T Consensus       379 p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        379 PPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             CCcccCHHHHHHHHHHHHHHhh
Confidence            5  4899999999999998763

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=3.5e-19  Score=184.55  Aligned_cols=177  Identities=11%  Similarity=0.063  Sum_probs=134.6

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~  121 (509)
                      +++|+.+ -...+++.++++++        .+..++++++++|+..++.+++++||    +|+++.|+|.+...    .+
T Consensus        58 y~r~~~p-~~~~le~~lA~l~g--------~~~~i~~ssG~~Ai~~~l~all~~GD----~Vi~~~~~y~~~~~~~~~~~  124 (398)
T PRK08249         58 YSRNTNP-TVQAFEEKVRILEG--------AEAATAFSTGMAAISNTLYTFLKPGD----RVVSIKDTYGGTNKIFTEFL  124 (398)
T ss_pred             ccCCCCh-HHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCC----EEEEcCCchHHHHHHHHHHH
Confidence            3344433 34789999999883        34567777778999999999999998    99999999987543    34


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ...|+++..++       ..|++.+++++++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.
T Consensus       125 ~~~Gi~v~~vd-------~~d~e~l~~~i~~-----~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a  189 (398)
T PRK08249        125 PRMGVDVTLCE-------TGDHEQIEAEIAK-----GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFA  189 (398)
T ss_pred             hhCCeEEEEcC-------CCCHHHHHHhcCC-----CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcC
Confidence            56788887765       2489999999976     7999999999999999988   8889999999999999999998


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .+...     .++ ..         .. -++++|+||.+ |.+|.++|++++  ++++++++++..+.
T Consensus       190 ~~~~~-----~~l-~~---------~~-Divv~S~sK~l-~g~~~~~gG~vv--~~~~l~~~l~~~~~  238 (398)
T PRK08249        190 TPINQ-----NPL-AL---------GA-DLVIHSATKFL-SGHADALGGVVC--GSKELMEQVYHYRE  238 (398)
T ss_pred             ccccC-----Cch-hh---------CC-CEEeccCceec-CCCCCceEEEEE--CCHHHHHHHHHHHH
Confidence            65432     111 11         11 25568999999 446766644433  78889998877665

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.86  E-value=5.7e-19  Score=181.78  Aligned_cols=202  Identities=17%  Similarity=0.238  Sum_probs=154.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      ..|.+++..++++.+++.+   ++....      .++++++++++.+.+|    .+++++|+|+++++.+++.++ .++|
T Consensus         5 ~~p~~~~~e~~a~~~~~~~---~~~~~~------g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~~pG   71 (376)
T TIGR02379         5 NKPPVTGQELEYIAEAISE---GKLSGD------GPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDIQPG   71 (376)
T ss_pred             CCCCCCHHHHHHHHHHHHc---CCccCC------cHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCCCCc
Confidence            4577888889999998887   443311      2345555555554434    468999999999999999888 7888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++.++|..+...+...|++++.++++++ +|.+|++.+++.+++     ++++|+   |+||+|...+   +
T Consensus        72 d----~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~-~~~~d~~~le~~i~~-----~tk~Ii---p~~~~G~~~d---~  135 (376)
T TIGR02379        72 D----EVIMPSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIESAITH-----RTKAIV---PVHYAGVACD---M  135 (376)
T ss_pred             C----EEEECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc-----CceEEE---EeCCCCCccC---H
Confidence            8    9999999999999999999999999999865 478999999999876     789886   6678999877   7


Q ss_pred             HHHHHHHHHCCcEEEEcccCCccc-ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNV-YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      ++|.++|+++|++||+|++|+.+. +.+. ...++.           +.-++++++ +|.++  +|.++|++++  .+++
T Consensus       136 ~~I~~la~~~~i~vIeDaa~~~g~~~~~~-~~g~~~-----------~~~~fSf~~-~K~l~--~g~~gG~v~~--~~~~  198 (376)
T TIGR02379       136 DTIMALANKHQLFVIEDAAQGVMSTYKGR-ALGSIG-----------HLGTFSFHE-TKNYT--SGGEGGALLI--NDQA  198 (376)
T ss_pred             HHHHHHHHHCCCEEEEECccccCCccCCc-ccCCCC-----------CEEEEeCCC-CCcCc--ccCCceEEEE--CCHH
Confidence            899999999999999999998765 3321 110100           111222211 48884  7889999864  7899


Q ss_pred             HHHHHHHhhh
Q psy13922        260 VKAMLHKSIS  269 (509)
Q Consensus       260 ~~~~l~~~~~  269 (509)
                      +.++++.++.
T Consensus       199 ~~~~~~~~~~  208 (376)
T TIGR02379       199 FIERAEIIRE  208 (376)
T ss_pred             HHHHHHHHHH
Confidence            9999988775

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.86  E-value=2.6e-19  Score=185.20  Aligned_cols=223  Identities=13%  Similarity=0.131  Sum_probs=154.0

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH--
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA--  122 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~--  122 (509)
                      .+++|+.+. ..+|++.++++++        .++.+++++++.++..++.+++++||    +|+++.|.|......+.  
T Consensus        54 ~y~r~~~pt-~~~Le~~lA~l~G--------~~~al~~~sG~~Ai~~~l~al~~~Gd----~Vv~~~~~y~~~~~~~~~~  120 (386)
T PRK06767         54 IYSRLGNPT-VKLFEERMAVLEG--------GEEALAFGSGMAAISATLIGFLKAGD----HIICSNGLYGCTYGFLEVL  120 (386)
T ss_pred             cccCCCCcc-hHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCcHHHHHHHHHHH
Confidence            455565544 4889999999983        23455555666799999999999998    99999998887655543  


Q ss_pred             --hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        123 --EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       123 --~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                        ..|+++..++       ..|++.+++++++     ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|
T Consensus       121 ~~~~gi~~~~~~-------~~d~~~l~~~i~~-----~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~  185 (386)
T PRK06767        121 EEKFMITHSFCD-------METEADIENKIRP-----NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTF  185 (386)
T ss_pred             HhhcCeEEEEeC-------CCCHHHHHHhhCc-----CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCC
Confidence              3465554443       2378999998876     7999999999999999988   788888999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHHHHHH-hhhcccC-cchh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKAMLHK-SISAMLC-PTVL  277 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~~l~~-~~~~~~~-~~~~  277 (509)
                      ......     .++.     .     .. -++++|+||.+ |.+|.++ ||++   .++++++++.+ .....++ .+.+
T Consensus       186 a~~~~~-----~pl~-----~-----g~-Div~~S~sK~l-~g~g~~~gG~v~---~~~~~i~~~~~~~~~~~g~~~~~~  245 (386)
T PRK06767        186 CSPYLQ-----RPLE-----L-----GC-DAVVHSATKYI-GGHGDVVAGVTI---CKTRALAEKIRPMRKDIGGIMAPF  245 (386)
T ss_pred             cccccC-----Cchh-----c-----CC-cEEEecCccee-cCCCCceeEEEE---eChHHHHHHHHHHHHHhCCCCCHH
Confidence            643221     1111     1     11 25567999999 4578875 8887   67777766543 2222221 1222


Q ss_pred             hhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13922        278 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS  357 (509)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  357 (509)
                                                        .+.++...++              .+....+...++...+.+.|++
T Consensus       246 ----------------------------------~a~l~~~~L~--------------tl~~r~~~~~~~a~~la~~L~~  277 (386)
T PRK06767        246 ----------------------------------DAWLLLRGLK--------------TLAVRMDRHCDNAEKIVSFLKN  277 (386)
T ss_pred             ----------------------------------HHHHHHcCCC--------------cHHHHHHHHHHHHHHHHHHHHc
Confidence                                              1111111111              1455667778899999999999


Q ss_pred             CCCCee
Q psy13922        358 IEGMSC  363 (509)
Q Consensus       358 ~~g~~~  363 (509)
                      +|+++.
T Consensus       278 ~p~v~~  283 (386)
T PRK06767        278 HDAVEG  283 (386)
T ss_pred             CCCccE
Confidence            998873

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.86  E-value=1.2e-18  Score=180.52  Aligned_cols=207  Identities=14%  Similarity=0.101  Sum_probs=143.1

Q ss_pred             CHHHHHHHHHHHhcccCC---CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQ---SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~---~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .|.+++++.+++++...+   .-..|+...+..+|++++|++++       ..+.+++++|.++.. .++.+++++||  
T Consensus        14 ~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g-------~e~al~~~sG~~a~~-~~i~~l~~~GD--   83 (392)
T PLN03227         14 SPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG-------TESAILYSDGASTTS-STVAAFAKRGD--   83 (392)
T ss_pred             CHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC-------CCcEEEecCcHHHHH-HHHHHhCCCCC--
Confidence            467888888888763311   12237777788899999999994       235677777776665 77778899998  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh---------ccCCceEEEEeCCCCCCCCC
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR---------KHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~---------~~~~~~~ivi~~p~NPtG~~  174 (509)
                        .|+++.+.|.++...+...+.++..++..       |++.+++.++...         ..+++++|++.+++||+|.+
T Consensus        84 --~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i  154 (392)
T PLN03227         84 --LLVVDRGVNEALLVGVSLSRANVRWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTL  154 (392)
T ss_pred             --EEEEeccccHHHHHHHHHcCCeEEEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcc
Confidence              99999999999988887778887777643       3444444333211         01257888899999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      .+   +++|.++|++||+++|+||+|. +...+. ......+.. .+.+.  ....+++.|+||.+ |   ..+|+++  
T Consensus       155 ~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~-~G~g~~~~~-g~~p~--~~~Div~~slsk~~-g---~~gg~v~--  220 (392)
T PLN03227        155 AP---LKELVALKEEFHYRLILDESFS-FGTLGK-SGRGSLEHA-GLKPM--VHAEIVTFSLENAF-G---SVGGMTV--  220 (392)
T ss_pred             cC---HHHHHHHHHHcCCEEEEECccc-ccccCC-CCCcHHHHc-CCCCC--CCceEEEeechhhh-h---ccCcEEe--
Confidence            99   8899999999999999999997 332221 111222211 11110  11145566899976 4   4568876  


Q ss_pred             cCCHHHHHHHHHh
Q psy13922        255 NLDPGVKAMLHKS  267 (509)
Q Consensus       255 ~~~~~~~~~l~~~  267 (509)
                       +++++++.++..
T Consensus       221 -~~~~~~~~~~~~  232 (392)
T PLN03227        221 -GSEEVVDHQRLS  232 (392)
T ss_pred             -cCHHHHHHHHHh
Confidence             788888877654

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.86  E-value=3.5e-19  Score=185.08  Aligned_cols=173  Identities=16%  Similarity=0.216  Sum_probs=133.7

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~  121 (509)
                      +++|+.+ ....+++.++++++        .++.+++++++.++.+++..+.++||    +|+++.|.|....    ..+
T Consensus        59 y~r~~~p-~~~~le~~lA~l~g--------~~~~i~~~sG~~Al~~~l~~ll~~Gd----~Viv~~~~y~~t~~~~~~~~  125 (403)
T PRK07503         59 YSRISNP-TLALLEQRMASLEG--------GEAAVALASGMGAITATLWTLLRPGD----EVIVDQTLYGCTFAFLHHGL  125 (403)
T ss_pred             eeCCCCc-hHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCC----EEEEccCccchHHHHHHHHH
Confidence            4555443 34789999999883        23456677778899999999999998    9999999886533    345


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ...|+++..++.+       |++.+++.+++     ++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|.
T Consensus       126 ~~~G~~v~~vd~~-------d~~~l~~~i~~-----~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a  190 (403)
T PRK07503        126 GEFGVTVRHVDLT-------DPAALKAAISD-----KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYC  190 (403)
T ss_pred             hhCCEEEEEeCCC-------CHHHHHHhcCc-----cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCc
Confidence            6789999988753       68999998876     7999999999999999977   8899999999999999999998


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      .....     .++ ..    +     . .++++|+||.++ .+| +++|+++   .+++++++++.
T Consensus       191 ~~~~~-----~~l-~~----g-----~-Di~v~S~tK~l~-g~gd~~gG~v~---~~~~l~~~l~~  236 (403)
T PRK07503        191 TPYLQ-----RPL-EL----G-----A-DLVVHSATKYLG-GHGDITAGLVV---GGKALADRIRL  236 (403)
T ss_pred             ccccC-----Cch-hh----C-----C-CEEEcccccccc-CCCceeEEEEE---cCHHHHHHHHh
Confidence            64321     121 11    1     1 366789999994 444 7888887   78888888864

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=1.2e-19  Score=187.50  Aligned_cols=317  Identities=10%  Similarity=0.093  Sum_probs=203.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|.+++++.+++....   .  ++. .-..++++++++.+..      .++ .+++++++++++..+++.......  ++
T Consensus        46 ~p~v~~a~~~~~~~~~---~--~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~~Al~~ar~~~~--~~  111 (375)
T PRK04260         46 HPQVQQALQKQAGLIW---H--SPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANEAAIKIARKATG--KQ  111 (375)
T ss_pred             CHHHHHHHHHHHHhcC---c--ccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHHHHHHHHHHhcC--CC
Confidence            5679999999988721   1  222 2236688899987742      123 468899999999999888754221  34


Q ss_pred             eEEEcCCCChhHH-HHHHhcCCEEEE------EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC-CCH
Q psy13922        106 GVLIPIPQYPLYS-ASLAEFNMEQIG------YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV-LTK  177 (509)
Q Consensus       106 ~Vlv~~p~y~~~~-~~~~~~g~~~~~------v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~-~s~  177 (509)
                      .|++....|++.. ..+...|.+...      ++...... ..|++.+++.+.+     ++++|++.+++|++|.. .+.
T Consensus       112 ~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dl~~l~~~l~~-----~~a~vi~e~v~~~~G~~~~~~  185 (375)
T PRK04260        112 EIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI-FNDLNSVKALVNK-----NTAAVMLELVQGESGVLPADK  185 (375)
T ss_pred             eEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC-CCCHHHHHHhcCC-----CeEEEEECCeECCCCCcCCCH
Confidence            8999999988743 333222221110      00000000 2378889887765     68888999999999985 457


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +.+++|.++|+++|+++|+||+|.++..++.  ..+...  ....+     +   +.||||.+ | +|+|+||++   .+
T Consensus       186 ~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~--~~~~~~--~~~~p-----d---i~t~sK~l-~-~G~~ig~~~---~~  248 (375)
T PRK04260        186 DFVKALADYCQETGILLIVDEVQTGMGRTGK--LYAFEH--YGIEP-----D---IFTLAKGL-A-NGVPVGAML---AK  248 (375)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhHh--hCCCC-----C---EEEecccc-c-CCcceEEEE---Ec
Confidence            8899999999999999999999988755431  212111  11211     1   34899999 4 899999998   78


Q ss_pred             HHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++.+.+..... .+.+.+.+                                  .++++...++        .-...+.
T Consensus       249 ~~~~~~~~~~~~~~t~~~~~~----------------------------------~~~aa~a~l~--------~~~~~~~  286 (375)
T PRK04260        249 SSLGGAFGYGSHGSTFGGNKL----------------------------------SMAAASATLD--------IMLTAGF  286 (375)
T ss_pred             HHHHhhcCCCCCCCCCCcCHH----------------------------------HHHHHHHHHH--------HHHhhHH
Confidence            888887754222 23334444                                  3333333322        0111123


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      ++++++..+.+++.+.+.+.+.+.+..+.. .|+++|+++..              +... +...+.++||.+.|+.   
T Consensus       287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~--------------~~~~-~~~~l~~~Gi~v~~~~---  347 (375)
T PRK04260        287 LEQALENGNYLQEQLQKALQDKETVTTVRG-LGYMIGIETTA--------------DLSQ-LVEAARDKGLIVLTAG---  347 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeeEEec-cceEEEEEecC--------------cHHH-HHHHHHhCCCEEecCC---
Confidence            566677777777777777766543333333 78888977641              1223 3456667899997631   


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAML  494 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~  494 (509)
                                                                       .  .        .+|++..  .++++|++++
T Consensus       348 -------------------------------------------------~--~--------~lR~~~~~~~t~~~i~~~l  368 (375)
T PRK04260        348 -------------------------------------------------T--N--------VIRLLPPLTLTKEEIEQGI  368 (375)
T ss_pred             -------------------------------------------------C--C--------EEEEcCCCccCHHHHHHHH
Confidence                                                             1  1        7899884  7899999999


Q ss_pred             HHHHHH
Q psy13922        495 EKFREF  500 (509)
Q Consensus       495 ~~l~~~  500 (509)
                      ++|+++
T Consensus       369 ~~l~~~  374 (375)
T PRK04260        369 AILSEV  374 (375)
T ss_pred             HHHHHh
Confidence            999875

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.86  E-value=4.3e-19  Score=184.09  Aligned_cols=174  Identities=16%  Similarity=0.260  Sum_probs=131.1

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----  121 (509)
                      +.+|+.+. ...|++.+|++++        .+..+++++++.++..++.+++++||    +|+++.|.|.++...+    
T Consensus        59 y~r~~~p~-~~~Le~~lA~l~G--------~~~~~~~~sG~~Ai~~~l~~~l~~Gd----~Vl~~~~~y~~~~~~~~~~~  125 (398)
T PRK07504         59 YSRYSNPT-VDMFEKRMCALEG--------AEDARATASGMAAVTAAILCQVKAGD----HVVAARALFGSCRYVVETLL  125 (398)
T ss_pred             eecCCCch-HHHHHHHHHHHhC--------CCeeeEecCHHHHHHHHHHHHhCCCC----EEEEcCCchhHHHHHHHHHH
Confidence            45565443 4789999999883        23345577788899888888889998    9999999999765443    


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ...|+++..++       .+|++.+++++++     ++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|.
T Consensus       126 ~~~G~~v~~vd-------~~d~e~l~~ai~~-----~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a  190 (398)
T PRK07504        126 PRYGIESTLVD-------GLDLDNWEKAVRP-----NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFA  190 (398)
T ss_pred             hhcCeEEEEEC-------CCCHHHHHHhcCc-----CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcc
Confidence            45688888875       3589999999876     7999999999999999988   8888999999999999999998


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH-HHHH
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA-MLHK  266 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~-~l~~  266 (509)
                      ...+.     .+. ..    +     . .++++|+||.+ |.+|.++|++++  .+++++. .++.
T Consensus       191 ~~~~~-----~~~-~~----g-----a-Divv~S~sK~l-~g~g~~~GG~vv--~~~~~i~~~~~~  237 (398)
T PRK07504        191 TPLFQ-----KPL-EL----G-----A-HIVVYSATKHI-DGQGRCLGGVVL--SDKAWIEEHLQD  237 (398)
T ss_pred             ccccC-----Cch-hh----C-----C-CEEEeeccccc-cCCccceEEEEE--eCcHHHHHHHHH
Confidence            65432     111 11    1     1 35677999999 568999875543  5555554 3443

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.86  E-value=1.8e-19  Score=188.53  Aligned_cols=339  Identities=11%  Similarity=0.066  Sum_probs=200.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+.   .+..+....  .+.+.++++.+.+... ....+.+++++++++|++.+++..+....  ++.
T Consensus        51 ~p~v~~a~~~ql~~~---~~~~~~~~~--~~~~~~la~~l~~~~p-~~~~~~v~f~~sGseA~e~AlklAr~~tg--r~~  122 (420)
T TIGR00700        51 HPRVVDAVRTQVAEF---THTCFMVTP--YEGYVALAEKLNRIAP-GSGPKKSVFFNSGAEAVENAVKIARSYTG--RPG  122 (420)
T ss_pred             CHHHHHHHHHHHHhc---cCccccccC--ChHHHHHHHHHHHhCC-CCCCCEEEEeCCcHHHHHHHHHHHHHhcC--CCc
Confidence            689999999999873   222121111  2233445554443321 01225899999999999999998765432  447


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCCC---------CCCCHHHHHHHHHhhhccCCceEEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESKQ---------WGLPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~---------~~~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      |+....+|++....+... +-             .+..++......         +.-+++.+++.+.......++.+|+
T Consensus       123 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi  202 (420)
T TIGR00700       123 VVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALV  202 (420)
T ss_pred             EEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence            888899999876544332 11             112222210000         0002456666664211123688888


Q ss_pred             EeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINPGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      +...+.-+|..+ +++.+++|.++|++||+++|+||+|.+|.+.+  .+.++...  ++.+     +   +.++||.+ |
T Consensus       203 ~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g--~~~a~~~~--~~~p-----D---i~~lsK~l-~  269 (420)
T TIGR00700       203 IEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG--AMFACEHE--GPEP-----D---LITTAKSL-A  269 (420)
T ss_pred             ECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc--hhHHHhhc--CCCC-----C---EEEeeccc-c
Confidence            876666778755 56669999999999999999999999987754  22222221  1111     1   34689999 5


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                       +|+|+||++   .++++++.+..... .+.+.+.+++.+                              +.+++..+.+
T Consensus       270 -~G~pig~v~---~~~~i~~~~~~~~~~~T~~~~pl~~aa------------------------------a~a~l~~l~~  315 (420)
T TIGR00700       270 -DGLPLSGVT---GRAEIMDAPAPGGLGGTYAGNPLACAA------------------------------ALAVLAIIES  315 (420)
T ss_pred             -CCcceEEEE---ecHHHHhhcCCCCcCCCCCcCHHHHHH------------------------------HHHHHHHHHh
Confidence             899999998   78999988754322 344555553322                              3333433322


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH--
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF--  399 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  399 (509)
                               +...++.+++.+.++++.+.+.+   ..|.+..+.+. |.+.|+.+..+.        .+. ++..+..  
T Consensus       316 ---------~~~~~~~~~~g~~l~~~L~~l~~---~~~~~~~vrg~-G~~~~i~~~~~~--------~~~-~~~~~~~~l  373 (420)
T TIGR00700       316 ---------EGLIERARQIGRLVTDRLTTLKA---VDPRIGDVRGL-GAMIAVELVDPG--------TTE-PDAGLAERI  373 (420)
T ss_pred             ---------ccHHHHHHHHHHHHHHHHHHHHh---hCCCEEEeecc-ceEEEEEEecCC--------CCC-ccHHHHHHH
Confidence                     12333344444444444333333   33444444455 566666553110        001 1222222  


Q ss_pred             -HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        400 -ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       400 -~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                       ..+.++||.+.|+..|+.                                                            +
T Consensus       374 ~~~~~~~Gv~i~p~~~f~~------------------------------------------------------------~  393 (420)
T TIGR00700       374 ATAAHAAGLLLLTCGMFGN------------------------------------------------------------I  393 (420)
T ss_pred             HHHHHHCCeEEeccCCCCC------------------------------------------------------------E
Confidence             334678999998765544                                                            8


Q ss_pred             EEEEee--cChHHHHHHHHHHHHHHH
Q psy13922        479 FRTTIL--PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       479 ~Rls~~--~~~~~i~~~~~~l~~~~~  502 (509)
                      +|+++.  .++++|++++++|.+++.
T Consensus       394 lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       394 IRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            999975  689999999999999874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.86  E-value=1.1e-19  Score=189.03  Aligned_cols=202  Identities=12%  Similarity=0.085  Sum_probs=135.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++++..... ..|+     .+...++++.+.+..+    .+.+++++++++|+..+++..+.-    +..
T Consensus        53 ~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~  122 (397)
T TIGR03246        53 HPELVKALIEQADKLWHIG-NGYT-----NEPVLRLAKKLVDATF----ADKVFFCNSGAEANEAALKLARRYALDKHGA  122 (397)
T ss_pred             CHHHHHHHHHHHHhccccc-CccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            7899999999988721111 1122     2233444444433322    368999999999999999987422    111


Q ss_pred             CCCeEEEcCCCChhHHHHHHh-cCCE------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAE-FNME------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      .+..|+..+-.|++....... .+..            +..++       ..|++.+++.+.+     ++++|+++.+++
T Consensus       123 ~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~-----~~aavi~Epi~~  190 (397)
T TIGR03246       123 DKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAP-------YNDLAAAKALISD-----KTCAVIVEPIQG  190 (397)
T ss_pred             CCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeC-------CCCHHHHHHHhcc-----CeEEEEEecccC
Confidence            245788888888887543332 2221            11111       2378999998875     788988886777


Q ss_pred             CCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      +.|.. .+++++++|.++|++||+++|+||+|.++...+.  ..+....  ++.++        +.++||.+ | +|+|+
T Consensus       191 ~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~--~~a~~~~--gv~pD--------i~t~~K~l-g-gG~pi  256 (397)
T TIGR03246       191 EGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYMHY--GVTPD--------ILTSAKAL-G-GGFPI  256 (397)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc--chhhhhc--CCCCC--------EEEeehhh-h-CCcce
Confidence            77765 4899999999999999999999999988865542  2221111  12111        33789999 5 89999


Q ss_pred             EEEeeecCCHHHHHHHHHh
Q psy13922        249 GYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~  267 (509)
                      ||++   .++++++.+...
T Consensus       257 gav~---~~~~i~~~~~~~  272 (397)
T TIGR03246       257 GAML---TTTEIAAHLKVG  272 (397)
T ss_pred             eEEE---EcHHHHHhccCC
Confidence            9998   788888888643

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.86  E-value=3.8e-19  Score=187.67  Aligned_cols=346  Identities=13%  Similarity=0.123  Sum_probs=201.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.++++.........+     ..+.+..+++.+.+..+.. ..+.++++++++||.+.+++..+.-..  +..
T Consensus        72 ~p~v~~ai~~q~~~~~~~~~~~~-----~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tg--r~~  143 (451)
T PRK06918         72 HPKVKEALHKQVDQYIHTGFNVM-----MYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVENAVKIARKYTK--RQG  143 (451)
T ss_pred             CHHHHHHHHHHHHhccCcccccc-----ccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHHHHHHHHHHHhC--CCc
Confidence            68899999999987321111111     1334455555554432211 115899999999999999998765432  457


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCC--CCCCCC--------HHHHHHHHHhhhccCCceEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDES--KQWGLP--------ISELERSITEARKHCNPRAI  162 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~--~~~~~d--------~~~L~~~i~~~~~~~~~~~i  162 (509)
                      |+....+|++....+... +.             .+..+|....  ...++.        ++.+++.+.......++.+|
T Consensus       144 ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAav  223 (451)
T PRK06918        144 IISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAV  223 (451)
T ss_pred             EEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence            999999999876554432 21             0122221100  000111        12344433211111256676


Q ss_pred             EEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      ++...+.-.|. ..+++.+++|.++|++||+++|+||+|.+|.+.+  .+.++..+.  ..+     +   +.|+||.+ 
T Consensus       224 i~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g--~~~a~~~~~--v~p-----D---i~t~sK~l-  290 (451)
T PRK06918        224 VMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG--KYFAIEHFD--VVP-----D---LITVSKSL-  290 (451)
T ss_pred             EECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC--ceehhHhcC--CCC-----C---EEeeehhh-
Confidence            66544444466 5566779999999999999999999999997764  233333321  111     1   44889999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhccc
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV  320 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~  320 (509)
                      | +|+|+||++   .++++++.+..... .+.+.+.+++.+                              +.+++..+.
T Consensus       291 ~-~G~pig~v~---~~~~i~~~~~~~~~~~T~~g~~l~~aa------------------------------a~a~l~~i~  336 (451)
T PRK06918        291 G-AGVPISGVI---GRKEIMDESAPGELGGTYAGSPLGCAA------------------------------ALAVLDIIE  336 (451)
T ss_pred             c-CCCccEEEE---EcHHHHhccCCCCcCcCCCcCHHHHHH------------------------------HHHHHHHHH
Confidence            5 899999998   78899888754333 344556653333                              333443332


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCc--HHHH
Q psy13922        321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPS--VLYA  398 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~  398 (509)
                      +         +...++.+++.+.+.++.+.+.+   +.+.+..+.+.|.++.|.....+.        ....+.  ...+
T Consensus       337 ~---------~~~~~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~--------~~~~~~~~~~~l  396 (451)
T PRK06918        337 K---------ENLNDRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRK--------TKEPDKTLTANI  396 (451)
T ss_pred             H---------CCHHHHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCC--------cCCCcHHHHHHH
Confidence            2         12223344444444444443332   233333345678888875432110        001111  1112


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ...+.++||.+.|+..|+.                                                            +
T Consensus       397 ~~~~~~~Gvlv~~~~~~~~------------------------------------------------------------~  416 (451)
T PRK06918        397 CKEANKRGLLLLSAGTYGN------------------------------------------------------------V  416 (451)
T ss_pred             HHHHHHCCeEEeecCCCCC------------------------------------------------------------E
Confidence            3445678999998754433                                                            7


Q ss_pred             EEEEee--cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        479 FRTTIL--PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       479 ~Rls~~--~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      +|+++.  .++++|++++++|.++++++..+
T Consensus       417 lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~  447 (451)
T PRK06918        417 IRVLMPLVITDEQLEEGLTIIEESLQACYEK  447 (451)
T ss_pred             EEEECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence            888874  78999999999999999876543

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.86  E-value=3e-19  Score=183.88  Aligned_cols=177  Identities=18%  Similarity=0.195  Sum_probs=136.0

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----H
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----L  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~  121 (509)
                      +.+|+ ..-..+|++.++++++        .+..++++++++|+..++.++.++||    +|+++.++|.+....    +
T Consensus        34 y~r~~-~p~~~~le~~la~l~g--------~~~a~~~~sG~~Ai~~~l~~l~~~gd----~Vl~~~~~y~~~~~~~~~~~  100 (369)
T cd00614          34 YSRIG-NPTVDALEKKLAALEG--------GEAALAFSSGMAAISTVLLALLKAGD----HVVASDDLYGGTYRLFERLL  100 (369)
T ss_pred             eECCC-ChhHHHHHHHHHHHHC--------CCCEEEEcCHHHHHHHHHHHHcCCCC----EEEECCCCcchHHHHHHHHH
Confidence            34343 3345788899998873        25677888889999999999999998    999999999886543    4


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ...|+++..++.+       |++.+++.+++     ++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|++|.
T Consensus       101 ~~~g~~~~~v~~~-------d~~~l~~~i~~-----~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~  165 (369)
T cd00614         101 PKLGIEVTFVDPD-------DPEALEAAIKP-----ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFA  165 (369)
T ss_pred             hhcCeEEEEeCCC-------CHHHHHHhcCC-----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCc
Confidence            4678888887643       58889988876     7999999999999999987   8899999999999999999997


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HHHHHHHHhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GVKAMLHKSIS  269 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~~~~l~~~~~  269 (509)
                      ...+.     .++ .    .+      ..++++|+||.++|..++++||++   .++ +++++++....
T Consensus       166 ~~~~~-----~~~-~----~g------~Divv~S~tK~l~g~~~~~gG~v~---~~~~~l~~~l~~~~~  215 (369)
T cd00614         166 TPYLQ-----RPL-E----LG------ADIVVHSATKYIGGHSDVIAGVVV---GSGEALIQRLRFLRL  215 (369)
T ss_pred             chhcC-----Chh-h----hC------CcEEEeccceeccCCCCceEEEEE---eCcHHHHHHHHHHHH
Confidence            64331     111 1    11      146678999999542338899997   454 88888876654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN00144 acetylornithine transaminase

Probab=99.86  E-value=7.1e-20  Score=189.12  Aligned_cols=328  Identities=12%  Similarity=0.078  Sum_probs=200.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC----C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD----G  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd----~  102 (509)
                      +|.+.+++.+++......... |.     .+....+++.+.+..    ..+.|++++++++|++.+++..+....    .
T Consensus        33 ~p~v~~ai~~q~~~~~~~~~~-~~-----~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~  102 (382)
T PLN00144         33 DPDWVKAVAEQAGTLAHVSNV-YH-----TIPQVELAKRLVASS----FADRVFFCNSGTEANEAAIKFARKYQRVRAPD  102 (382)
T ss_pred             CHHHHHHHHHHHHhcCCcccc-cc-----CHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHHHHHHHHHHHHhccCCC
Confidence            589999999999873211111 11     233445555554321    246899999999999999988753210    0


Q ss_pred             C-------CCeEEEcCCCChhHHHHHHhcCCEE-EE---EecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922        103 K-------KPGVLIPIPQYPLYSASLAEFNMEQ-IG---YYLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus       103 ~-------~~~Vlv~~p~y~~~~~~~~~~g~~~-~~---v~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      +       +.+|+....+|++....+....... ..   .|..+...+  ..|++.|++.+...    ++++||+...+|
T Consensus       103 ~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~aavi~eP~q~  178 (382)
T PLN00144        103 KKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG----KTAAVFVEPVQG  178 (382)
T ss_pred             CccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC----CeEEEEEccccC
Confidence            0       3479999999998765544332111 00   010000000  12688998888542    688888865599


Q ss_pred             CCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      |.|. .++++.+++|.++|++||+++|+||+|..|...+.  ..+. +. .++.++        +.+|||.+ | +|+|+
T Consensus       179 ~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~--~~~~-~~-~~~~PD--------i~t~sK~l-~-~G~pi  244 (382)
T PLN00144        179 EGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY--LWAH-EA-YGVEPD--------IMTLAKPL-A-GGLPI  244 (382)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--Hhhh-hh-cCCCCC--------EEEecccc-c-CCcce
Confidence            9555 34566799999999999999999999999876642  2111 11 122221        55889999 4 89999


Q ss_pred             EEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                      ||++   .++++++.+..... .+...+.+++++                              +.+++..+.+      
T Consensus       245 g~v~---~~~~~~~~~~~~~~~~T~~~~pl~~aa------------------------------a~a~l~~i~~------  285 (382)
T PLN00144        245 GAVL---VTEKVASAINPGDHGSTFAGGPLVCNA------------------------------ALAVLDKISK------  285 (382)
T ss_pred             EEEE---EcHHHHhccCCCCCCCCCCCCHHHHHH------------------------------HHHHHHHHhh------
Confidence            9998   78999988754222 333455552222                              3333333322      


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        328 PSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                         .++.++.+++.+.++   +.+.+.+.+.|.+.-+. ..|+++|+.+..              +... +...+.++||
T Consensus       286 ---~~~~~~~~~~g~~l~---~~l~~~~~~~~~~~~vr-g~G~~~~l~l~~--------------~~~~-~~~~~~~~Gv  343 (382)
T PLN00144        286 ---PGFLASVAKKGEYLR---ELLRRKLGGNPHVKEVR-GVGLLVGIQLDV--------------PAGP-LVDACRDSGL  343 (382)
T ss_pred             ---chHHHHHHHHHHHHH---HHHHHHHhhCCCceeee-cCceEEEEEecC--------------ccHH-HHHHHHHCCe
Confidence               223333444555443   33444444444332222 378999987742              1233 3455667899


Q ss_pred             EEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--c
Q psy13922        408 CIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--P  485 (509)
Q Consensus       408 ~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~  485 (509)
                      .+.|+.                                                    .+ .        .+|++..  .
T Consensus       344 ~i~~~~----------------------------------------------------~~-~--------~lrl~p~~~~  362 (382)
T PLN00144        344 LVLTAG----------------------------------------------------KG-D--------VVRLVPPLVI  362 (382)
T ss_pred             EEeecC----------------------------------------------------CC-C--------EEEEeCCCcc
Confidence            998752                                                    11 1        7888877  7


Q ss_pred             ChHHHHHHHHHHHHHHHHH
Q psy13922        486 QPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~~  504 (509)
                      ++++|++++++|.+++.++
T Consensus       363 ~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        363 SEAELEQAVEILADCLPAL  381 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            8999999999999998653

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=3.8e-19  Score=184.05  Aligned_cols=175  Identities=13%  Similarity=0.166  Sum_probs=135.0

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH----HHH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY----SAS  120 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~----~~~  120 (509)
                      .+++|+.+. ..+|++.+|++++        .+..++++++++++..++..++++||    .|+++.|.|...    ...
T Consensus        52 ~y~r~~~p~-~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd----~Vi~~~~~y~~t~~~~~~~  118 (391)
T TIGR01328        52 IYSRLGNPT-VSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGD----HLISDECLYGCTFALLEHA  118 (391)
T ss_pred             ceeCCCCch-HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEecCcchHHHHHHHHH
Confidence            355565443 4789999999983        23467888888999999999999998    999999988654    344


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      +...|+++..++.+       |++.+++.++.     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|
T Consensus       119 ~~~~G~~~~~vd~~-------d~e~l~~~i~~-----~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~  183 (391)
T TIGR01328       119 LTKFGIQVDFINMA-------IPEEVKAHIKD-----NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTF  183 (391)
T ss_pred             HhcCCeEEEEECCC-------CHHHHHHhhcc-----CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCC
Confidence            55679998888753       68999998876     7999999999999999987   888999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHHHHHHh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~~l~~~  267 (509)
                      ......     .++.     .     .. -++++|+||.+ |.+|.++ |+++   .+++++++++..
T Consensus       184 a~~~~~-----~~~~-----~-----g~-Divv~S~sK~l-gg~g~~~gG~v~---~~~~li~~l~~~  231 (391)
T TIGR01328       184 ATPMLT-----NPVA-----L-----GV-DVVVHSATKYI-GGHGDVVAGLIC---GKAELLQQIRMV  231 (391)
T ss_pred             chhccC-----Cchh-----c-----CC-CEEEccccccc-cCCCCceEEEEE---cCHHHHHHHHHH
Confidence            864331     1111     1     12 25677999999 5678764 6655   788988888754

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.85  E-value=1.7e-19  Score=187.91  Aligned_cols=211  Identities=7%  Similarity=0.040  Sum_probs=133.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----C-
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----V-  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----g-  100 (509)
                      +|.|.+++.+.+......... + .......+++.+++++    +    .+.+++++++++|+..+++.++..     | 
T Consensus        49 ~p~v~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~----~----~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~  118 (400)
T PTZ00125         49 HPKILAALINQAQKLTLTSRA-F-YNDVLGLAEKYITDLF----G----YDKVLPMNSGAEAGETALKFARKWGYEVKGI  118 (400)
T ss_pred             CHHHHHHHHHHHHhccccccc-c-cCHHHHHHHHHHHhCC----C----CCEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence            788999999988763211111 1 1122233444444432    2    368999999999999999987531     0 


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhc-CCEEEE---EecCCCC--CCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEF-NMEQIG---YYLDESK--QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~--~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ...++.|++.+-.|++........ +.....   .+..+..  -...|++.|++.++..    ++++|+++.++||+|.+
T Consensus       119 ~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~v~~ep~~~~~G~~  194 (400)
T PTZ00125        119 PENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDP----NVAAFIVEPIQGEAGVI  194 (400)
T ss_pred             CCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCC----CeEEEEEcCccCCCCCc
Confidence            001347888888888765443332 211100   0000000  0023899999988622    79999998899999998


Q ss_pred             CC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        175 LT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       175 ~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ++ ++++++|.++|++||+++|+||+|.++.+++.  .... . .....+     +++   ++||.+ |.+++|+||++ 
T Consensus       195 ~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~--~~~~-~-~~~~~p-----d~~---~~sK~l-~~g~~~ig~v~-  260 (400)
T PTZ00125        195 VPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK--LLAH-D-HEGVKP-----DIV---LLGKAL-SGGLYPISAVL-  260 (400)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhHH-H-hcCCCC-----CEE---EEcccc-cCCCcCcEEEE-
Confidence            86 56799999999999999999999988765531  1111 1 111111     233   568999 43335999998 


Q ss_pred             ecCCHHHHHHHHHh
Q psy13922        254 INLDPGVKAMLHKS  267 (509)
Q Consensus       254 ~~~~~~~~~~l~~~  267 (509)
                        .++++++.+...
T Consensus       261 --~~~~~~~~~~~~  272 (400)
T PTZ00125        261 --ANDDVMLVIKPG  272 (400)
T ss_pred             --EcHHHHhhccCC
Confidence              788998887643

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.85  E-value=1e-18  Score=180.43  Aligned_cols=177  Identities=18%  Similarity=0.248  Sum_probs=136.6

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH----HHH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY----SAS  120 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~----~~~  120 (509)
                      .+++|+.+. ..++++.++++++        .+.+++++++++++..++.+++++||    +|+++.+.|.+.    ...
T Consensus        47 ~y~r~~~p~-~~~le~~la~l~g--------~~~~~~~~sG~~Ai~~al~al~~~Gd----~Vl~~~~~~~~t~~~~~~~  113 (380)
T TIGR01325        47 VYSRYANPT-VAAFEERIAALEG--------AERAVATATGMSAIQAALMTLLQAGD----HVVASRSLFGSTVGFISEI  113 (380)
T ss_pred             ceecCCCch-HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEecCCcchHHHHHHHH
Confidence            345565443 4789999998873        25688899999999999999999998    999998888653    345


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      ++..|.++..++.+       |++.+++.+++     ++++|++++|+||+|...+   +++|.++|+++|+++|+|++|
T Consensus       114 ~~~~g~~v~~v~~~-------d~~~l~~~i~~-----~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~  178 (380)
T TIGR01325       114 LPRFGIEVSFVDPT-------DLNAWEAAVKP-----NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVF  178 (380)
T ss_pred             HHHhCCEEEEECCC-------CHHHHHHhcCC-----CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCC
Confidence            67789999888653       68889888866     7999999999999999976   899999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ..+...     .++ .    .+     . .++++|+||.+ |.+|.++ |+++   .++++++.++....
T Consensus       179 ~~~~~~-----~pl-~----~g-----~-Divv~S~sK~l-~g~g~~~gG~vv---~~~~~~~~l~~~~~  228 (380)
T TIGR01325       179 ATPVLQ-----QPL-K----LG-----A-DVVVYSATKHI-DGQGRVMGGVIA---GSEELMAEVAVYLR  228 (380)
T ss_pred             cccccC-----Cch-h----hC-----C-CEEEeecccee-cCCCCeEEEEEE---eCHHHHHHHHHHHH
Confidence            864332     111 1    11     1 35567999999 4577776 5555   78888888876544

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=6e-19  Score=182.67  Aligned_cols=179  Identities=21%  Similarity=0.183  Sum_probs=139.8

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----H
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----S  120 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~  120 (509)
                      .+++|+.+ ...+|++.+++++    |    .+++++++|+++|+..++.+++++||    +|+++.|+|..+..    .
T Consensus        58 ~Y~r~~~p-t~~~Le~~lA~l~----g----~~~~l~~~sgt~Ai~~~l~al~~~GD----~Vl~~~~~y~~~~~~~~~~  124 (394)
T PRK07050         58 RYGLHATP-TSLALAQRLAEIE----G----GRHALLQPSGLAAISLVYFGLVKAGD----DVLIPDNAYGPNRDHGEWL  124 (394)
T ss_pred             ccCCCCCH-HHHHHHHHHHHHh----C----CCeEEEeccHHHHHHHHHHHHhCCCC----EEEEecCCcccHHHHHHHH
Confidence            45556443 3477888888887    2    46899999999999999999999998    99999999998664    4


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      +...|+++..++..       +.+.+++.+++     ++++|++++|+||+|..   .++++|+++|+++|+++|+|++|
T Consensus       125 ~~~~Gi~v~~vd~~-------~~~~l~~~i~~-----~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~  189 (394)
T PRK07050        125 ARDFGITVRFYDPL-------IGAGIADLIQP-----NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTY  189 (394)
T ss_pred             HHhcCeEEEEECCC-------CHHHHHHhcCC-----CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCc
Confidence            56679999887632       34678888776     79999999999999754   67999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .....     ..++.     .+      ..++++|+||.++|..++++|++++  .++++.++++..+.
T Consensus       190 a~~~~-----~~~l~-----~G------aDi~v~S~tK~~~g~~~~~gG~v~~--~~~~~~~~~~~~~~  240 (394)
T PRK07050        190 SAGLA-----FKPFE-----HG------VDISVQALTKYQSGGSDVLMGATIT--ADAELHAKLKLARM  240 (394)
T ss_pred             ccccc-----cCHHH-----cC------CeEEEEECCceecCCCCeeEEEEEE--CCHHHHHHHHHHHH
Confidence            76332     11111     11      1466889999997666677998864  68889888876655

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.85  E-value=2e-18  Score=178.33  Aligned_cols=200  Identities=17%  Similarity=0.174  Sum_probs=154.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      ..|.+++..++++.+.+.+   ++.. +++  ...+|+++++++++        .+++++++|+++|+.+++.++ .++|
T Consensus         8 ~~p~~~~~e~~~~~~~l~~---~~~~-~g~--~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~G   73 (379)
T PRK11658          8 SRPAMGDEELAAVKEVLRS---GWIT-TGP--KNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPG   73 (379)
T ss_pred             CCCCCCHHHHHHHHHHHHc---CCcc-CCH--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCC
Confidence            5677888889999998887   4443 444  35899999999983        246888999999999999999 7888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    +|+++.|+|..+...+...|++++.++.+++ +|.+|++.+++.+++     ++++|+   |+|++|...+   +
T Consensus        74 d----~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~-~~~~d~~~l~~~i~~-----~tkav~---~~~~~G~~~d---~  137 (379)
T PRK11658         74 D----EVITPSLTWVSTLNMIVLLGATPVMVDVDRD-TLMVTPEAIEAAITP-----RTKAII---PVHYAGAPAD---L  137 (379)
T ss_pred             C----EEEECCCcHHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhccc-----CCeEEE---EeCCCCCcCC---H
Confidence            8    9999999999999999999999999998765 467899999999986     789887   5667999866   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|.++|+++|++||+|++|+......+ ...         +..  .  + .+.||++.. .+++.++|+++.  .++++
T Consensus       138 ~~i~~~a~~~gi~vi~D~a~a~g~~~~~-~~~---------g~~--g--~-~~~Sf~~~K-~l~~g~GG~v~~--~~~~~  199 (379)
T PRK11658        138 DAIRAIGERYGIPVIEDAAHAVGTYYKG-RHI---------GAR--G--T-AIFSFHAIK-NITCAEGGLVVT--DDDEL  199 (379)
T ss_pred             HHHHHHHHHcCCeEEEECCCccCCeECC-eec---------CCC--C--C-EEEeCCCCC-cCcccCceEEEE--CCHHH
Confidence            8999999999999999999985332111 111         110  1  1 244666444 345667888763  67899


Q ss_pred             HHHHHHhhh
Q psy13922        261 KAMLHKSIS  269 (509)
Q Consensus       261 ~~~l~~~~~  269 (509)
                      .++++....
T Consensus       200 ~~~~~~~~~  208 (379)
T PRK11658        200 ADRLRSLKF  208 (379)
T ss_pred             HHHHHHHHH
Confidence            998887654

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1.3e-18  Score=179.90  Aligned_cols=173  Identities=15%  Similarity=0.166  Sum_probs=130.7

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNME  127 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~  127 (509)
                      .....+|+++++++++.        +..++++++++|+..++.+++++||    +|+++.|+|......+.    ..|++
T Consensus        60 ~p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all~~Gd----~Vl~~~~~y~~t~~~~~~~~~~~gi~  127 (388)
T PRK07811         60 NPTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVLRPGD----HIVIPNDAYGGTFRLIDKVFTRWGVE  127 (388)
T ss_pred             CccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHhCCCC----EEEEcCCCchHHHHHHHHhCcCCCeE
Confidence            34568999999999842        2234445668999999999999998    99999999996544433    35777


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      +..++.       .|++.+++.+++     ++++|++++|+||+|...+   +++|+++|+++|+++|+|++|...... 
T Consensus       128 ~~~~d~-------~d~e~l~~~i~~-----~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-  191 (388)
T PRK07811        128 YTPVDL-------SDLDAVRAAITP-----RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ-  191 (388)
T ss_pred             EEEeCC-------CCHHHHHHhcCc-----CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC-
Confidence            776653       379999999876     7999999999999998855   999999999999999999999864321 


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                          .++. .    +     . -++++|+||.++|..+.++||+++  .++++.+.+...+.
T Consensus       192 ----~p~~-~----g-----a-Divv~S~sK~l~g~~~~~gG~vv~--~~~~l~~~~~~~~~  236 (388)
T PRK07811        192 ----QPLA-L----G-----A-DVVVHSTTKYIGGHSDVVGGALVT--NDEELDEAFAFLQN  236 (388)
T ss_pred             ----Cchh-h----C-----C-cEEEecCceeecCCCCcEEEEEEE--CCHHHHHHHHHHHH
Confidence                1211 1    1     1 366779999995434467899873  56778777765544

>PRK07505 hypothetical protein; Provisional

Probab=99.85  E-value=1.7e-18  Score=180.42  Aligned_cols=208  Identities=13%  Similarity=0.137  Sum_probs=131.2

Q ss_pred             CCCHHHHHHHHHHHhccc-CCCcccC--CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc---
Q psy13922         25 RFPDDVKQRAQAVLDGCR-GQSVGSY--TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE---   98 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~-~~~~~~Y--~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---   98 (509)
                      +-+|.|++++.+++.+.. .......  .......++++.+++++    +  .  +.+++++ ++++...+++.+..   
T Consensus        60 ~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~--~~~~~~s-G~~a~~~ai~~~~~~~~  130 (402)
T PRK07505         60 DTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF----G--A--SVLTFTS-CSAAHLGILPLLASGHL  130 (402)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh----C--C--CEEEECC-hHHHHHHHHHHHHhccc
Confidence            337899999999998632 1111100  01223355666666555    4  1  4444554 55788777766542   


Q ss_pred             CCCCCCCeEEEcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      +++  +..|++.+..|++...   .....+.+++.+|.       .|++.+++.++.     +++++++++|+||+|.++
T Consensus       131 ~~~--~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~-----~~~~~vl~~p~~~~G~~~  196 (402)
T PRK07505        131 TGG--VPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKT-----NKTVAYVADGVYSMGGIA  196 (402)
T ss_pred             CCC--CCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhc-----CCCEEEEEecccccCCcC
Confidence            111  2247777766665321   12223556676664       378999998876     578999999999999998


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      +   +++|.++|+++|+++|+||+|+...++..........+    +.. ...++++++|+||.+ |.+|   ||+++  
T Consensus       197 ~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~----~~~-~~d~~i~~~s~sK~~-~~~G---g~~~~--  262 (402)
T PRK07505        197 P---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSEL----DYR-LNERTIIAASLGKAF-GASG---GVIML--  262 (402)
T ss_pred             C---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHc----CCC-CCCCeEEEEechhhh-hccC---eEEEe--
Confidence            8   78888899999999999999965444321111111111    110 022478889999999 6565   88753  


Q ss_pred             CCHHHHHHHHHhhh
Q psy13922        256 LDPGVKAMLHKSIS  269 (509)
Q Consensus       256 ~~~~~~~~l~~~~~  269 (509)
                      +++++++.+.....
T Consensus       263 ~~~~~~~~~~~~~~  276 (402)
T PRK07505        263 GDAEQIELILRYAG  276 (402)
T ss_pred             CCHHHHHHHHHhCC
Confidence            68899998877544

>KOG1549|consensus

Probab=99.85  E-value=2.2e-19  Score=179.78  Aligned_cols=197  Identities=23%  Similarity=0.266  Sum_probs=154.7

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCccc-C--CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGS-Y--TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-   98 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~-Y--~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-   98 (509)
                      ...+|+.|++++...+...-.+.... |  ....+.++.|+.||++++      .++.+|+||+|+||+++++++.+.. 
T Consensus        52 t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFts~ATEs~Nlvl~~v~~~  125 (428)
T KOG1549|consen   52 TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFTSGATESNNLVLKGVARF  125 (428)
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEeCCchHHHHHHHHHhhcc
Confidence            44568899999988888743333332 4  344568899999999995      6777899999999999999999854 


Q ss_pred             CCCCCCCeEEEcCCCChhHH---HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYS---ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      .+++.+++||+..-.|....   ..++..|++++.+|...+  ...|.+.+++.|+.     +++++.|...+|.+|+.+
T Consensus       126 ~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~--~~~d~~~~~~~i~~-----~T~lv~I~~Vnn~~gv~~  198 (428)
T KOG1549|consen  126 FGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDS--GLVDISKLREAIRS-----KTRLVSIMHVNNEIGVLQ  198 (428)
T ss_pred             ccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCcc--ccccHHHHHHhcCC-----CceEEEEEecccCccccc
Confidence            33323448888887777654   455667999999999854  37899999999999     899999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      |   +++|.++|+++++.+++|.+++.     +.....+.++..|         ..++ |.+|+| |.+|  +|++.+
T Consensus       199 P---v~EI~~icr~~~v~v~~DaAQav-----G~i~vDV~eln~D---------~~s~-s~HK~y-gp~~--iGaLYv  255 (428)
T KOG1549|consen  199 P---VKEIVKICREEGVQVHVDAAQAV-----GKIPVDVQELNAD---------FLSI-SAHKIY-GPPG--IGALYV  255 (428)
T ss_pred             c---HHHHHHHhCcCCcEEEeehhhhc-----CCccccHHHcCch---------heee-eccccc-CCCc--ceEEEE
Confidence            9   99999999999999999999987     3334555555433         5555 889999 8999  666663

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.85  E-value=6.7e-19  Score=181.62  Aligned_cols=319  Identities=15%  Similarity=0.196  Sum_probs=209.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC---cccCCC--CcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS---VGSYTD--SPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~---~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~   95 (509)
                      +...+|+.|++++.+.+.......   .+.+..  ..-..++|+.++++++      .++ ++|++++|++.+++.++.+
T Consensus         7 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg------~~~~~~v~~~~~~t~a~~~~~~~   80 (371)
T PF00266_consen    7 GTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG------APPDEEVVFTSNGTEALNAVASS   80 (371)
T ss_dssp             SS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT------SSTTEEEEEESSHHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC------Cccccccccccccchhhhhhhhc
Confidence            344568999999999988643222   111111  1234577788888883      455 7999999999999999999


Q ss_pred             h---hcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         96 L---IEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        96 l---~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      +   .++++    +|++..-.|++..    ...+..|+++..++.+.++  .+|++.+++.+..     ++++++++..+
T Consensus        81 l~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~-----~~~lv~~~~~~  149 (371)
T PF00266_consen   81 LLNPLKPGD----EVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNP-----DTRLVSISHVE  149 (371)
T ss_dssp             HHHHGTTTC----EEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHT-----TESEEEEESBE
T ss_pred             ccccccccc----ccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhcc-----ccceEEeeccc
Confidence            9   67777    9999998888765    3344679999999887553  7899999999986     89999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      |.||..++   +++|.++|+++|+++++|.+++.....     ..+..+         +.+++ +.|..| +.|.+|  +
T Consensus       150 ~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~-----id~~~~---------~~D~~-~~s~~K-l~gp~G--~  208 (371)
T PF00266_consen  150 NSTGVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVP-----IDLDEL---------GADFL-VFSSHK-LGGPPG--L  208 (371)
T ss_dssp             TTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS-------TTTT---------TESEE-EEESTS-TTSSST--E
T ss_pred             ccccEEee---eceehhhhhccCCceeEechhcccccc-----cccccc---------cccee-eecccc-cCCCCc--h
Confidence            99999988   899999999999999999998863321     111111         22245 558899 547776  5


Q ss_pred             EEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      |++.   .+++.++++......+........            ...........+++|+.......++..+++       
T Consensus       209 g~l~---v~~~~~~~~~p~~~~~~~~~~~~~------------~~~~~~~~~~~~~~GT~~~~~~~~l~~al~-------  266 (371)
T PF00266_consen  209 GFLY---VRPEAIERLRPAKPGGGYLDFPSL------------QEYGLADDARRFEGGTPNVPAIYALNEALK-------  266 (371)
T ss_dssp             EEEE---EEHHHHHHHHTSSSSSSTTTHHHH------------HHHCHHSTTTGSSSSS--HHHHHHHHHHHH-------
T ss_pred             hhhe---ehhhhhhccccccccccccccccc------------hhcccccccccccccceeeehhhhHHHHHh-------
Confidence            7776   488888888654432221111100            000000111123344444445555555543       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc----CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP----VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                       +- ....++++.++..++.+++.+.|.+++++.+..    ...+..+.+.++            +.  +...+...|++
T Consensus       267 -~~-~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~--~~~~~~~~L~~  330 (371)
T PF00266_consen  267 -LL-EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLP------------GS--DADDVVKYLEE  330 (371)
T ss_dssp             -HH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEET------------TS--SHHHHHHHHHH
T ss_pred             -hh-hccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeec------------CC--CHHHHHHHHhh
Confidence             11 122367788889999999999999998877743    222333333343            22  22235677777


Q ss_pred             cCeEEecCCCCC
Q psy13922        405 TGICIVPGAGFG  416 (509)
Q Consensus       405 ~gI~v~pg~~f~  416 (509)
                      .||.+..|..+.
T Consensus       331 ~~I~~~~G~~~~  342 (371)
T PF00266_consen  331 RGIAVSTGSACA  342 (371)
T ss_dssp             HTEEEEESTTTC
T ss_pred             cCEEEeccCccc
Confidence            799999977655

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.85  E-value=3.2e-18  Score=173.59  Aligned_cols=324  Identities=15%  Similarity=0.158  Sum_probs=222.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcc---cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG---SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~---~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .+.+++++.++++....+..+   -++...-..+|.+.+|+|+    |    .+..++.+++..|...++.+|++++|  
T Consensus        55 ~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~----g----~e~al~f~SGy~AN~~~i~~l~~~~d--  124 (388)
T COG0156          55 HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL----G----AEAALLFSSGFVANLGLLSALLKKGD--  124 (388)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh----C----CCcEEEEcccchhHHHHHHHhcCCCc--
Confidence            467999999999985322221   1444444466777777777    3    44566666666788899999999988  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                        .|+...-+|.+..+.++..+++++.+..       .|++.||+.+++.... .+.++|++...-...|.+.|   |++
T Consensus       125 --li~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~  192 (388)
T COG0156         125 --LIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPE  192 (388)
T ss_pred             --EEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHH
Confidence              9999999999999999999999999875       3899999999874321 13567777788888999977   999


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |++++++|++++++||+|+...+++.  ...+.+..   +-. +....|.++||||.+ |..|   ||++   ++..+++
T Consensus       193 l~~L~~ky~a~L~VDEAHa~Gv~G~~--GrG~~e~~---g~~-~~~vdi~~gTlsKAl-Gs~G---g~v~---g~~~~~d  259 (388)
T COG0156         193 LVELAEKYGALLYVDEAHAVGVLGPN--GRGLAEHF---GLE-PEEVDIIVGTLGKAL-GSSG---GYIA---GSAALID  259 (388)
T ss_pred             HHHHHHHhCcEEEEEccccccccCCC--CccHHHHh---CCC-CccceEEEEEchhhh-cccC---ceee---CcHHHHH
Confidence            99999999999999999999888642  23333322   110 122367799999999 7666   8887   8999999


Q ss_pred             HHHHhhhcc--c-CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        263 MLHKSISAM--L-CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       263 ~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      .+.+....+  + +.++. .++                 +            ...+++.+               +....
T Consensus       260 ~L~~~ar~~ifStalpP~-~aa-----------------a------------~~~al~~l---------------~~~~~  294 (388)
T COG0156         260 YLRNRARPFIFSTALPPA-VAA-----------------A------------ALAALRIL---------------EEGPE  294 (388)
T ss_pred             HHHHhCCceeccCCCCHH-HHH-----------------H------------HHHHHHHH---------------HhCHH
Confidence            998864422  2 22222 000                 0            23333332               22456


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .+++++++...+.+.+... ++.+.++...+.-++ +..+.            ....+...++++ ||++.+......+ 
T Consensus       295 ~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I~pv~-~gd~~------------~a~~~s~~l~~~-Gi~v~~i~~PTVp-  358 (388)
T COG0156         295 RRERLQELAAFFRSLLKAL-GLVLLPSESPIIPVI-LGDEE------------RALEASRALLEE-GIYVSAIRPPTVP-  358 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCccCCCCCCeeeeE-eCCHH------------HHHHHHHHHHHC-CeeEeeecCCCCC-
Confidence            6777777777777666655 666655566555432 33222            133334455555 9999986655552 


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKF  497 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l  497 (509)
                                                                            .|+..+|+++.  +++++|+.+++.|
T Consensus       359 ------------------------------------------------------~gtarlRi~lta~ht~~~I~~l~~~l  384 (388)
T COG0156         359 ------------------------------------------------------KGTARLRITLTAAHTEEDIDRLAEAL  384 (388)
T ss_pred             ------------------------------------------------------CCcceEEEEecCCCCHHHHHHHHHHH
Confidence                                                                  23338999988  8999998888887


Q ss_pred             HHH
Q psy13922        498 REF  500 (509)
Q Consensus       498 ~~~  500 (509)
                      .++
T Consensus       385 ~~~  387 (388)
T COG0156         385 SEV  387 (388)
T ss_pred             Hhh
Confidence            764

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.84  E-value=3.6e-18  Score=176.29  Aligned_cols=200  Identities=19%  Similarity=0.246  Sum_probs=152.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      ..|.+.+..++++.+.+.+   +..  |+.    .++++++++++.+.+|    .+++++|+|+++|+.+++..+ .++|
T Consensus         5 ~~p~~~~~~~~~~~~~l~~---~~~--~g~----~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~G   71 (375)
T PRK11706          5 NKPPVVGTELDYIQQAMSS---GKL--CGD----GGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPG   71 (375)
T ss_pred             CCCCCCHHHHHHHHHHHHc---CCc--cCC----CHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCC
Confidence            4567778888888888887   332  321    3356666666655544    368999999999999887766 6788


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    +|+++.|+|..+...+...|++++.++.+++ +|.+|++.+++.+++     ++++|+++   |++|...+   +
T Consensus        72 d----~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~-----~tk~i~~~---~~~G~~~~---~  135 (375)
T PRK11706         72 D----EVIMPSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITP-----KTRAIVPV---HYAGVACE---M  135 (375)
T ss_pred             C----EEEECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCC-----CCeEEEEe---CCCCCccC---H
Confidence            8    9999999999999999999999999998865 478999999999876     79998876   46898755   7


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecCCH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++|.++|+++|++||+|++|+.+...++   .+...+    +       .+.+.||+  |.++  +|.++++++   .++
T Consensus       136 ~~i~~la~~~~i~vIeD~a~a~g~~~~~---~~~g~~----~-------~~~~~Sf~~~K~l~--~g~gG~~~~---~~~  196 (375)
T PRK11706        136 DTIMALAKKHNLFVVEDAAQGVMSTYKG---RALGTI----G-------HIGCFSFHETKNYT--AGEGGALLI---NDP  196 (375)
T ss_pred             HHHHHHHHHcCCEEEEECccccccccCC---eeeecC----c-------CEEEEeCCCCcccc--ccCCeEEEE---CCH
Confidence            8999999999999999999988763222   111111    0       12233544  9994  798888886   789


Q ss_pred             HHHHHHHHhhh
Q psy13922        259 GVKAMLHKSIS  269 (509)
Q Consensus       259 ~~~~~l~~~~~  269 (509)
                      ++.++++.++.
T Consensus       197 ~~~~~~~~~~~  207 (375)
T PRK11706        197 ALIERAEIIRE  207 (375)
T ss_pred             HHHHHHHHHHH
Confidence            99998887765

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=3.5e-18  Score=175.83  Aligned_cols=175  Identities=16%  Similarity=0.202  Sum_probs=136.3

Q ss_pred             CCCC--cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----H
Q psy13922         49 YTDS--PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----A  122 (509)
Q Consensus        49 Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~  122 (509)
                      |+..  .....|++++|++..        .+++++++|+++|+..++.+++++||    +|++++|.|.++...+    .
T Consensus        55 Y~r~~npt~~~Le~~iA~le~--------~~~~~~~~sG~~Ai~~~l~all~~GD----~Vvv~~~~Y~~t~~l~~~~l~  122 (394)
T PRK09028         55 YGRRGTPTHFAFQAAIVELEG--------GAGTALYPSGAAAISNALLSFLKAGD----HLLMVDSCYEPTRDLCDKILK  122 (394)
T ss_pred             ecCCCCchHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEECCCcHHHHHHHHHhhh
Confidence            6552  344689999998862        24789999999999999999999999    9999999998876543    5


Q ss_pred             hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc
Q psy13922        123 EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD  202 (509)
Q Consensus       123 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~  202 (509)
                      ..|.++..++..       +.+.+++++++     ++++|++++|+||||.+   .++++|+++|+++|+++|+|++|..
T Consensus       123 ~~Gi~v~~v~~~-------~~e~l~~~l~~-----~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        123 GFGIETTYYDPM-------IGEGIRELIRP-----NTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             hcceEEEEECCC-------CHHHHHHhcCc-----CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence            578888776532       45778888876     79999999999999887   5599999999999999999999976


Q ss_pred             ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ...     ..++ .    .+.      -++++|.+|.++|.+++-.|+++   .++++.+.+.....
T Consensus       188 p~~-----~~Pl-~----~Ga------Divv~S~tK~l~Gh~d~~~G~~~---~~~~~~~~l~~~~~  235 (394)
T PRK09028        188 PIN-----SRPF-E----MGV------DISIQAATKYIVGHSDVMLGTAT---ANEKHWDQLREHSY  235 (394)
T ss_pred             ccc-----CCcc-c----cCc------eEEEEeCCeEecCCCCEEEEEEE---CCHHHHHHHHHHHH
Confidence            321     1121 1    111      36688999999988888899775   67777777765433

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.84  E-value=7.1e-19  Score=180.10  Aligned_cols=236  Identities=14%  Similarity=0.137  Sum_probs=161.6

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      .+++|+.+ ...+|+++++++.        ..+++++++|+++|+.+++. ++++||    +|+++.+.|......+...
T Consensus        47 ~Y~R~~~p-~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l~~GD----~VI~~~~~yg~~~~~~~~~  112 (364)
T PRK07269         47 DYTRTKNP-TRAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VFPVGS----KVVAVRDLYGGSFRWFNQQ  112 (364)
T ss_pred             ceeCCCCc-cHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-HhCCCC----EEEEecCCcCchHHHHHHH
Confidence            35556544 3488999999998        35789999999999999984 668888    9999999988655443322


Q ss_pred             CCE-EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        125 NME-QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       125 g~~-~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      ..+ -+.+      .|..|++.++++++.     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|...
T Consensus       113 ~~~~~~~~------~~~~d~~~l~~~i~~-----~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~  178 (364)
T PRK07269        113 EKEGRFHF------TYANTEEELIAAIEE-----DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSP  178 (364)
T ss_pred             HhcCcEEE------EecCCHHHHHHhcCc-----CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccc
Confidence            110 0111      134589999999986     7999999999999999875   999999999999999999997542


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcc-cCcchhhhhcc
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAM-LCPTVLALVSL  282 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~  282 (509)
                      .+     ..++. .    +     . -++++|++|.++|..++=.|+++.  .++++.++++..+... ...+...    
T Consensus       179 ~~-----~~pl~-~----g-----a-Divv~S~tK~l~g~~d~~gG~v~~--~~~~l~~~~~~~~~~~G~~~s~~~----  236 (364)
T PRK07269        179 IY-----QRPIE-L----G-----A-DIVLHSATKYLSGHNDVLAGVVVT--NDLELYEKLFYNLNTTGAVLSPFD----  236 (364)
T ss_pred             cc-----CCchh-h----C-----C-cEEEecCceeccCCCcccceEEEe--CcHHHHHHHHHHHHHhCCCCCHHH----
Confidence            21     11221 1    1     1 366779999995433344677652  5788888887554321 1222220    


Q ss_pred             ccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy13922        283 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS  362 (509)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  362 (509)
                                                   +..++..+-               .+....+...++...+.+.|++.|.+.
T Consensus       237 -----------------------------a~l~~~~L~---------------tL~~r~~~~~~na~~~a~~L~~~p~v~  272 (364)
T PRK07269        237 -----------------------------SYLLMRGLK---------------TLSLRMERSTANAQEVVAFLKKSPAVK  272 (364)
T ss_pred             -----------------------------HHHHHcCCC---------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                                         111222221               166667777888889999999888754


Q ss_pred             -e-ccCCceeEEee
Q psy13922        363 -C-NPVQGAMYAFP  374 (509)
Q Consensus       363 -~-~~~~~g~~~~~  374 (509)
                       + +|+.||++.+.
T Consensus       273 ~v~ypg~gg~~sf~  286 (364)
T PRK07269        273 EVLYTGKGGMISFK  286 (364)
T ss_pred             EEeCCCcCcEEEEE
Confidence             4 47778887764

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.84  E-value=5.2e-18  Score=175.54  Aligned_cols=205  Identities=17%  Similarity=0.135  Sum_probs=151.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      ..|.+++..++++.+++.+   +.+. ++  .+..+++++++++++.        ++.++++|+++|+..++.++ .++|
T Consensus         4 ~~~~~~~~~~~~v~~~~~~---~~~~-~g--~~~~~le~~la~~~g~--------~~~v~~~sgt~al~~~l~al~~~~G   69 (380)
T TIGR03588         4 GRQSIDQDDIDAVVEVLKS---DFLT-QG--PTVPAFEEALAEYVGA--------KYAVAFNSATSALHIACLALGVGPG   69 (380)
T ss_pred             CcCCCCHHHHHHHHHHHhc---CCcc-CC--hhHHHHHHHHHHHHCC--------CeEEEEcCHHHHHHHHHHHcCCCCC
Confidence            4577888889999888877   4333 33  3458899999999942        34566778899999999998 7888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++.|+|..+...+...|++++.++++++ ++.+|++.+++.+++. +.+++++|+++   |++|...+   +
T Consensus        70 d----~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~-~~~~t~~v~~~---~~~G~~~~---~  137 (380)
T TIGR03588        70 D----RVWTTPITFVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAA-KGKLPKAIVPV---DFAGKSVD---M  137 (380)
T ss_pred             C----EEEeCCcchHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcc-cCCCceEEEEe---CCCCccCC---H
Confidence            8    9999999999999999999999999998764 4689999999999831 00168888854   46888765   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecCCH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++|.++|+++|++||+|++++....-.+ ....  . . +      .. -+++.|++  |.+.  .| ..|++++  .++
T Consensus       138 ~~i~~l~~~~~~~lI~D~a~a~g~~~~~-~~~g--~-~-~------~~-d~~~~S~~~~K~~~--~~-~GG~v~~--~~~  200 (380)
T TIGR03588       138 QAIAALAKKHGLKIIEDASHALGAEYGG-KPVG--N-C-R------YA-DATVFSFHPVKIIT--TA-EGGAVTT--NDE  200 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccCccCC-EeCC--C-c-c------cc-ceEEEecCCCCccc--cc-CceEEEE--CCH
Confidence            9999999999999999999987532111 1111  0 0 0      01 23344765  8883  34 5676653  788


Q ss_pred             HHHHHHHHhhh
Q psy13922        259 GVKAMLHKSIS  269 (509)
Q Consensus       259 ~~~~~l~~~~~  269 (509)
                      ++.++++..+.
T Consensus       201 ~~~~~~~~~~~  211 (380)
T TIGR03588       201 ELAERMRLLRS  211 (380)
T ss_pred             HHHHHHHHHHH
Confidence            99988876654

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.84  E-value=7.2e-18  Score=174.90  Aligned_cols=326  Identities=10%  Similarity=0.082  Sum_probs=207.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcch----HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-----
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGI----EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-----   97 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~----~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----   97 (509)
                      .|.++++..+++++.+.+..+ -....|.    .+|.+++|++++        .+..++.+++..|...++.++.     
T Consensus       118 ~p~v~~a~~~ai~~yG~g~~g-Srl~~G~~~~h~~LE~~LA~f~g--------~e~all~sSGy~AN~~~i~aL~~~~~~  188 (476)
T PLN02955        118 HPTISNAAANAAKEYGMGPKG-SALICGYTTYHRLLESSLADLKK--------KEDCLVCPTGFAANMAAMVAIGSVASL  188 (476)
T ss_pred             CHHHHHHHHHHHHHcCCCCCC-cCccccChHHHHHHHHHHHHHHC--------CCcEEEECChHHHHHHHHHHHhhcccc
Confidence            578999999999885433222 1123344    567777777772        4567777777778778887773     


Q ss_pred             -----cCCCCCCCeEEEcCCCChhHHHHHHhc----CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         98 -----EDVDGKKPGVLIPIPQYPLYSASLAEF----NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        98 -----~~gd~~~~~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                           .+..++++.|+...-+|.+....++..    ++++..++.+       |++.|++.++...+  +.++|++....
T Consensus       189 ~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-------D~~~Le~~L~~~~~--~~~~Vv~EgV~  259 (476)
T PLN02955        189 LAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-------DMYHLNSLLSSCKM--KRKVVVTDSLF  259 (476)
T ss_pred             ccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-------CHHHHHHHHHhCCC--CceEEEEeCCC
Confidence                 111112336777788888888888766    5777776643       89999999976422  34566667779


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ++.|.+.+   +++|.++|++||+++|+||+|+.+.++..  ......... +.    ....|+++||||.+ |.   +.
T Consensus       260 SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~--G~G~~e~~g-~~----~di~ii~~TLsKA~-G~---~G  325 (476)
T PLN02955        260 SMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGEN--GGGVAEEFN-CE----ADVDLCVGTLSKAA-GC---HG  325 (476)
T ss_pred             CCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCC--CCcHHHHhC-CC----CCCcEEEEeCccch-hc---cC
Confidence            99999988   88899999999999999999998887542  223332211 11    12357788999998 54   45


Q ss_pred             EEEeeecCCHHHHHHHHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      |+++   +++++++.++.....  ++...++.+.+.                             ..+++..+..     
T Consensus       326 Gfi~---gs~~~~~~l~~~~~~~ifStalpp~~aaa-----------------------------~laal~l~~~-----  368 (476)
T PLN02955        326 GFIA---CSKKWKQLIQSRGRSFIFSTAIPVPMAAA-----------------------------AYAAVVVARK-----  368 (476)
T ss_pred             ceee---cHHHHHHHHHHhCCCCeecccccHHHHHH-----------------------------HHHHHHHHhc-----
Confidence            9987   788899988865442  222222211110                             2233332211     


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                                -...++.++++.+++.+.+    |+.+   .+.++. +.+..+.             ....+.+.|.+.|
T Consensus       369 ----------~~~~r~~L~~n~~~fr~~~----G~~~---~sPI~p-I~ig~~~-------------~a~~~~~~L~~~G  417 (476)
T PLN02955        369 ----------EKWRRKAIWERVKEFKALS----GVDI---SSPIIS-LVVGNQE-------------KALKASRYLLKSG  417 (476)
T ss_pred             ----------CHHHHHHHHHHHHHHHHhc----CCCC---CCCEEE-EEeCCHH-------------HHHHHHHHHHHCC
Confidence                      1235567777777776632    4442   233332 2233222             2222456677789


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |++.+......+                                               .+        +..+||++.  
T Consensus       418 i~v~~i~yPtVP-----------------------------------------------~g--------~~rLRi~lsA~  442 (476)
T PLN02955        418 FHVMAIRPPTVP-----------------------------------------------PN--------SCRLRVTLSAA  442 (476)
T ss_pred             CEEEEECCCCCC-----------------------------------------------CC--------CceEEEeeCCC
Confidence            999976655552                                               23        338999998  


Q ss_pred             cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        485 PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      +++++|+.+++.|.++.+....+
T Consensus       443 Ht~edId~lv~~L~~~~~~~~~~  465 (476)
T PLN02955        443 HTTEDVKKLITALSSCLDFDNTA  465 (476)
T ss_pred             CCHHHHHHHHHHHHHHHhhhcce
Confidence            89999999999999887654433

>PLN02624 ornithine-delta-aminotransferase

Probab=99.84  E-value=1.9e-18  Score=183.02  Aligned_cols=222  Identities=10%  Similarity=0.064  Sum_probs=140.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----VD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----gd  101 (509)
                      +|.|.+++.+++.+...... .|. .....+|.+.+++++    +    .+.+++++++++|+..+++..+..     |.
T Consensus        93 ~p~v~~ai~~ql~~~~~~~~-~~~-~~~~~~la~~L~~~~----~----~~~~~f~~SGseA~e~AlklAr~~~~~~~g~  162 (474)
T PLN02624         93 HPKIIKALTEQAEKLTLSSR-AFY-NDKFPEFAEYLTSMF----G----YDMVLPMNTGAEGVETAIKLARKWGYEKKGI  162 (474)
T ss_pred             CHHHHHHHHHHHHhcCCccc-ccC-CHHHHHHHHHHHhhc----C----CCeEEEeCChHHHHHHHHHHHHHHHHhhcCC
Confidence            79999999999988321111 122 233355666666553    2    368999999999999999876542     11


Q ss_pred             -CCCCeEEEcCCCChhHHHHHHhcCCEEE-E---EecCCC---CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922        102 -GKKPGVLIPIPQYPLYSASLAEFNMEQI-G---YYLDES---KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus       102 -~~~~~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~---~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                       +.+..|+...-+|++............. .   .|..+.   -. ..|++.+++.++..  ..++++|++..++|++|.
T Consensus       163 ~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~l~~~--~~~iaaiiiEpv~~~~G~  239 (474)
T PLN02624        163 PKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVD-FGDLDALEKIFEED--GDRIAAFLFEPIQGEAGV  239 (474)
T ss_pred             CCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeC-CCCHHHHHHHHHhC--CCCEEEEEECCccCCCCC
Confidence             0123677788888887544433221110 0   000000   00 12688999888742  126889999999999999


Q ss_pred             CCCHH-HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 VLTKE-NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 ~~s~~-~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +++++ ++++|.++|++||+++|+||+|.++..++.  ..+..  ..+..     .+++   ++||.+ |.+++++|+++
T Consensus       240 v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~--~~a~~--~~~i~-----pDiv---~lsK~l-ggG~~pigav~  306 (474)
T PLN02624        240 VIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK--MLACD--WEEVR-----PDVV---ILGKAL-GGGVIPVSAVL  306 (474)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc--hhhHH--hcCCC-----CCEE---Eecccc-cCCCCcceeee
Confidence            87665 699999999999999999999998765541  11111  11111     1233   468999 65669999998


Q ss_pred             eecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        253 VINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                         .++++++.+..... .+.+.+.+
T Consensus       307 ---~~~~i~~~~~~~~~~~T~~g~pl  329 (474)
T PLN02624        307 ---ADKDVMLCIKPGEHGSTFGGNPL  329 (474)
T ss_pred             ---ecHHHHhHhccCCcCCCCCCCHH
Confidence               67888877754333 22344555

>KOG1411|consensus

Probab=99.84  E-value=2.6e-19  Score=171.70  Aligned_cols=333  Identities=18%  Similarity=0.183  Sum_probs=244.7

Q ss_pred             HHHHHHHhhcCCCCC-----------CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCC
Q psy13922          7 LSLQVLALVSLPQLF-----------DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD   75 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~-----------~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~   75 (509)
                      ++-+.++....|..+           |.|..-+.|+++-++.+..   ...-.|.|-.|++++.+..+++........+.
T Consensus        41 GVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~---~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik  117 (427)
T KOG1411|consen   41 GVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASL---SLDKEYLPITGLAEFNKLSAKLALGDNSPVIK  117 (427)
T ss_pred             cHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhh---cccchhccccchHHHHHHHHHHhhcCCchhhh
Confidence            455555555555554           5666678888887777774   33335999999999999999998543222234


Q ss_pred             CCcEEEe--CCHHHHHHHHHHHhhc--CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHH
Q psy13922         76 WQDVILS--AGASDGIKSVLKLLIE--DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSIT  151 (509)
Q Consensus        76 ~~~i~~t--~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~  151 (509)
                      .++|+.+  =++|.++......+..  ++.    .|.+|+|+|.++...++.+|+.+..+.-.+...-++|.+.+.+.+.
T Consensus       118 ~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~----~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~  193 (427)
T KOG1411|consen  118 EKRIVTVQTLSGTGALRVGAEFLARFYPSR----DIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLG  193 (427)
T ss_pred             ccceeEEEeccCcchhhHHHHHHHhhcccc----ceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHh
Confidence            4455443  4566777766666543  444    8999999999999999999999988876555556899999888777


Q ss_pred             hhhccCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCcee
Q psy13922        152 EARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMEL  230 (509)
Q Consensus       152 ~~~~~~~~~~ivi~-~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  230 (509)
                      +.   +.-..|++. ..|||||+-.++|+|++|.++.++.+.+-+.|-+|..|..++-..-.-...++.+.     +.++
T Consensus       194 ~~---p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~-----g~~~  265 (427)
T KOG1411|consen  194 EA---PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVED-----GHEI  265 (427)
T ss_pred             cC---CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHc-----CCce
Confidence            74   122344454 55999999999999999999999999999999999999875421111122233332     4458


Q ss_pred             EEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH----Hhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhc
Q psy13922        231 ASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH----KSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDG  305 (509)
Q Consensus       231 i~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (509)
                      ++.-|++|.. |+.|-|+|.+.+++.+++...++.    .+.. .+.+|+..|..+++.+|.|+++              
T Consensus       266 ~laQSyAKNM-GLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l--------------  330 (427)
T KOG1411|consen  266 LLAQSYAKNM-GLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDL--------------  330 (427)
T ss_pred             Eeehhhhhhc-chhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHH--------------
Confidence            8899999999 999999999988888877665553    3333 5678888877777777766554              


Q ss_pred             ccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C-CCeeccCCceeEEeecCCCCHHH
Q psy13922        306 CRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI--E-GMSCNPVQGAMYAFPQMKLPAKA  382 (509)
Q Consensus       306 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~-g~~~~~~~~g~~~~~~~~~~~~~  382 (509)
                                              +.+|..++..+..++...+..|.+.|...  + .+..+..+-|+|.+-        
T Consensus       331 ------------------------~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fT--------  378 (427)
T KOG1411|consen  331 ------------------------KNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFT--------  378 (427)
T ss_pred             ------------------------HHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeec--------
Confidence                                    57788889999999999999999999874  2 255566788888873        


Q ss_pred             HHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        383 IAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       383 ~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                             |+++++  +..+.+++.|++.
T Consensus       379 -------gl~peQ--v~~l~ke~~iYmT  397 (427)
T KOG1411|consen  379 -------GLNPEQ--VDWLTKEYHIYLT  397 (427)
T ss_pred             -------CCCHHH--HHHHHhhheeeec
Confidence                   444443  6888899999987

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.84  E-value=2.4e-18  Score=178.16  Aligned_cols=172  Identities=20%  Similarity=0.273  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~  130 (509)
                      ..++++.+++++    |  .. +.+++++| +.++..++. +.++||    +|+++.|.|.+..    ..++..|+++..
T Consensus        56 ~~~le~~lA~l~----g--~~-~~v~~~sG-~~ai~~~l~-~l~~Gd----~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~  122 (390)
T PRK08064         56 REALEDIIAELE----G--GT-KGFAFASG-MAAISTAFL-LLSKGD----HVLISEDVYGGTYRMITEVLSRFGIEHTF  122 (390)
T ss_pred             HHHHHHHHHHHh----C--CC-CeEEECCH-HHHHHHHHH-HhCCCC----EEEEccCccchHHHHHHHHHHHcCCEEEE
Confidence            467888888887    3  22 45555555 678888886 677888    9999999887533    455678999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++..       |++.+++.+++     ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|..+...    
T Consensus       123 v~~~-------d~~~l~~~l~~-----~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----  183 (390)
T PRK08064        123 VDMT-------NLEEVAQNIKP-----NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ----  183 (390)
T ss_pred             ECCC-------CHHHHHHhcCC-----CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----
Confidence            8753       68899888876     7999999999999999976   888999999999999999999764321    


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhccc
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAML  272 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~  272 (509)
                       .++ .    .+     . .++++|+||.++|.+|+..|++++  +++++++.++..+..+.
T Consensus       184 -~~~-~----~g-----~-Divv~S~tK~~~G~~~~laG~~v~--~~~~~~~~l~~~~~~~g  231 (390)
T PRK08064        184 -KPL-D----LG-----A-DVVLHSATKFLAGHSDVLAGLAVV--KDEELAQKLYFLQNSFG  231 (390)
T ss_pred             -Cch-h----hC-----C-cEEEeecceeccCCccceeEEEEe--CCHHHHHHHHHHHHhcC
Confidence             111 1    11     1 356779999996666777787763  67889999887776443

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.83  E-value=1.9e-18  Score=180.60  Aligned_cols=334  Identities=14%  Similarity=0.140  Sum_probs=205.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.+.+++.+++.+.   ....+....  .+....+++.+.+.... -..+.+++++++++|++.+++..+....  +..
T Consensus        58 ~p~v~~ai~~ql~~~---~~~~~~~~~--~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tg--r~~  129 (421)
T PRK06777         58 HPKVVAAVRQQLDQF---THTAYQIVP--YASYVTLAERINALAPI-DGPAKTAFFTTGAEAVENAVKIARAYTG--RPG  129 (421)
T ss_pred             CHHHHHHHHHHHhhc---ccccccccC--ChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHHHHHHHHHHHhhC--CCe
Confidence            688999999999883   222121111  22334444444433210 1235899999999999999998765432  457


Q ss_pred             EEEcCCCChhHHHHHHhc-CCE-------------EEEEecCCCCCCC----CCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NME-------------QIGYYLDESKQWG----LPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~~-------------~~~v~~~~~~~~~----~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      |+....+|++....+... +..             +..++.... ...    -+++.+++.++......++.+|++...+
T Consensus       130 ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~  208 (421)
T PRK06777        130 VIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQ  208 (421)
T ss_pred             EEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHHHHHhccCCCceEEEEECCcc
Confidence            999999999876554432 210             111111110 001    1256677777531111267888887678


Q ss_pred             CCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        169 NPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       169 NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      +..|. +++++.+++|.++|++||+++|+||+|.+|.+++  .+.+...+  +..+     +++   ++||.+ | +|+|
T Consensus       209 ~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g--~~~~~~~~--~~~p-----Div---~~sK~l-~-~G~p  274 (421)
T PRK06777        209 GEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG--KLFAMEYY--DVKP-----DLI---TMAKSL-G-GGMP  274 (421)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC--chhhhhhc--CCCC-----CEE---eeehhh-c-CCCc
Confidence            88886 6899999999999999999999999999987654  22222221  1111     233   789999 6 8999


Q ss_pred             eEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      +||++   .++++++.+..... .+.+.+.+++.+                              +.+++..+.      
T Consensus       275 igav~---~~~~i~~~~~~~~~~~T~~~~p~~~aa------------------------------a~a~L~~~~------  315 (421)
T PRK06777        275 ISAVV---GRAEVMDAPAPGGLGGTYAGNPLAVAA------------------------------ALAVLDVIA------  315 (421)
T ss_pred             eEEEE---EcHHHHhccCCCCCCCCCCcCHHHHHH------------------------------HHHHHHHHH------
Confidence            99998   78899888764332 344456653222                              333333221      


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH---
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSI----EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF---  399 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  399 (509)
                                -+.+.+.++++.+++.+.|+++    |.+..+.+.|.++.+ .+..+.        .+. ++..++.   
T Consensus       316 ----------~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i-~~~~~~--------~~~-~~~~~~~~l~  375 (421)
T PRK06777        316 ----------EEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAV-EFNDPQ--------TGK-PSPEFTRQYQ  375 (421)
T ss_pred             ----------hccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEE-EEecCc--------cCC-ccHHHHHHHH
Confidence                      1344555556666666666553    444556778888764 232221        011 1222222   


Q ss_pred             HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeE
Q psy13922        400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHF  479 (509)
Q Consensus       400 ~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ..+.+.||.+.|+..|+.                                                            ++
T Consensus       376 ~~~~~~Gv~i~~~~~~g~------------------------------------------------------------~l  395 (421)
T PRK06777        376 RQALEEGLLLLSCGVHGN------------------------------------------------------------VI  395 (421)
T ss_pred             HHHHhCCeEEeecCCCCC------------------------------------------------------------EE
Confidence            335568999998765443                                                            78


Q ss_pred             EEEe--ecChHHHHHHHHHHHHHHH
Q psy13922        480 RTTI--LPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       480 Rls~--~~~~~~i~~~~~~l~~~~~  502 (509)
                      |++.  ..++++|++++++|.+++.
T Consensus       396 r~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        396 RFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            8887  4899999999999998863

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.83  E-value=2.1e-18  Score=180.42  Aligned_cols=225  Identities=12%  Similarity=0.104  Sum_probs=144.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.+.+++.+++.+.   .+..+...  ..+....+++.+.+.... ...+.+++++++++|++.+++..+.-..  +.+
T Consensus        58 ~p~v~~ai~~ql~~~---~~~~~~~~--~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tg--r~~  129 (421)
T PRK09792         58 HPDLVAAVEQQLQQF---THTAYQIV--PYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAVENAVKIARAHTG--RPG  129 (421)
T ss_pred             CHHHHHHHHHHHHhc---cCcccCcc--CCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHHHHHHHHHHHhcC--CCe
Confidence            789999999999872   22212111  123344555555433221 1125799999999999999998875432  447


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCCCCCC----CHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESKQWGL----PISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~~----d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      |+....+|++........ |.             .+..+|...... .+    +++.+++.+++.....++++|++...+
T Consensus       130 ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~-~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq  208 (421)
T PRK09792        130 VIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLH-GISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQ  208 (421)
T ss_pred             EEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccc-cccHHHHHHHHHHHHHhccCCCceEEEEEcccc
Confidence            999999999875433222 21             122222211100 12    246777777631111268899987669


Q ss_pred             CCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        169 NPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       169 NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      +|+|..+ +++.+++|.++|++||+++|+||++.+|.+.+  .+.+...+  ...+     +   +.+|||.+ | +|+|
T Consensus       209 ~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G--~~~a~~~~--~~~p-----D---i~t~gK~l-~-~G~p  274 (421)
T PRK09792        209 GEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG--KLFAMDHY--ADKP-----D---LMTMAKSL-A-GGMP  274 (421)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC--chhHHHhc--CCCC-----c---EEEeehhh-c-CCCc
Confidence            9999755 99999999999999999999999999987764  23333322  1111     1   45889999 5 8999


Q ss_pred             eEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        248 GGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      +||++   .++++++.+..... .+...+.+
T Consensus       275 igav~---~~~~i~~~~~~~~~~~T~~gnpl  302 (421)
T PRK09792        275 LSGVV---GNANIMDAPAPGGLGGTYAGNPL  302 (421)
T ss_pred             eEEEE---EcHHHHhccCCCCcCCCCCCCHH
Confidence            99998   78999887754322 33445555

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.83  E-value=6.5e-18  Score=172.74  Aligned_cols=190  Identities=16%  Similarity=0.193  Sum_probs=140.9

Q ss_pred             HHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCCCCCCCeEEE
Q psy13922         31 KQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDVDGKKPGVLI  109 (509)
Q Consensus        31 ~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv  109 (509)
                      ++++.+.+.+   +.+. +.  ....++++.++++++        .+++++++|+++++..++..+ .++||    +|++
T Consensus         2 ~~~~~~~~~~---~~~~-~~--~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd----~vl~   63 (352)
T cd00616           2 LEAVEEVLDS---GWLT-LG--PKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGD----EVIV   63 (352)
T ss_pred             hHHHHHHHHc---CCcc-CC--HHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCC----EEEe
Confidence            3566677766   4333 33  345889999999983        256888889999999999998 47787    9999


Q ss_pred             cCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q psy13922        110 PIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR  189 (509)
Q Consensus       110 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~  189 (509)
                      +.++|..+...+...|++++.++.++. ++.+|++.+++.+++     ++++|+++   |++|...+   +++|.++|++
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~---~~~G~~~~---~~~i~~l~~~  131 (352)
T cd00616          64 PSFTFVATANAILLLGATPVFVDIDPD-TYNIDPELIEAAITP-----RTKAIIPV---HLYGNPAD---MDAIMAIAKR  131 (352)
T ss_pred             CCcchHHHHHHHHHcCCeEEEEecCCC-cCCcCHHHHHHhcCc-----CCeEEEEE---CCCCCcCC---HHHHHHHHHH
Confidence            999999999999999999999998752 578899999998865     78998876   46898876   7888899999


Q ss_pred             CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecCCHHHHHHHHHh
Q psy13922        190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       190 ~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~  267 (509)
                      +|+++|+|++|+......+   ..+...          . .+.+.|++  |.+ +  +-++|++++  .++++.+.++..
T Consensus       132 ~~i~li~D~a~~~g~~~~~---~~~~~~----------~-d~~~~S~~~~K~~-~--~~~gg~~~~--~~~~~~~~~~~~  192 (352)
T cd00616         132 HGLPVIEDAAQALGATYKG---RKVGTF----------G-DAGAFSFHPTKNL-T--TGEGGAVVT--NDEELAERARLL  192 (352)
T ss_pred             cCCeEEEECCCCCCCeECC---EEcccC----------c-ceeEEcCCCCCCC-c--ccCceEEEE--CCHHHHHHHHHH
Confidence            9999999999975432211   011000          0 23344665  887 3  335677763  667888887765


Q ss_pred             hh
Q psy13922        268 IS  269 (509)
Q Consensus       268 ~~  269 (509)
                      ..
T Consensus       193 ~~  194 (352)
T cd00616         193 RN  194 (352)
T ss_pred             HH
Confidence            43

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=5.8e-18  Score=174.80  Aligned_cols=177  Identities=16%  Similarity=0.210  Sum_probs=133.5

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH---H
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL---A  122 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~---~  122 (509)
                      +.+|+.+ ...+|++.++++++        .+++++++|+++|+..++.+++++||    +|+++.|+|.++...+   .
T Consensus        47 y~r~~np-~~~~lE~~lA~l~g--------~~~~l~~~sG~~Ai~~~l~~ll~~GD----~Vlv~~~~y~~~~~~~~~~~  113 (385)
T PRK08574         47 YSREENP-TLRPLEEALAKLEG--------GVDALAFNSGMAAISTLFFSLLKAGD----RVVLPMEAYGTTLRLLKSLE  113 (385)
T ss_pred             EECCCCc-cHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHhh
Confidence            3444433 45889999999983        35788889999999999999999998    9999999999887665   4


Q ss_pred             hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc
Q psy13922        123 EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD  202 (509)
Q Consensus       123 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~  202 (509)
                      ..|+++..+.        +|++.+++.+++.    ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..
T Consensus       114 ~~g~~v~~~~--------~d~~~l~~~i~~~----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~  178 (385)
T PRK08574        114 KFGVKVVLAY--------PSTEDIIEAIKEG----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFAT  178 (385)
T ss_pred             ccCcEEEEEC--------CCHHHHHHhcCcc----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence            4577776542        3678888888653    6899999999999999998   78999999999999999999964


Q ss_pred             ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe-eEEEeeecCCHHHHHHHHHhhh
Q psy13922        203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR-GGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr-~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ...     ..++.     .+.      .++++|+||.++| +|-. .|++++  .++++.++++..+.
T Consensus       179 ~~~-----~~~l~-----~Ga------Divv~S~sK~l~g-~~d~~gG~vi~--~~~~~~~~~~~~~~  227 (385)
T PRK08574        179 PLL-----YRPLR-----HGA------DFVVHSLTKYIAG-HNDVVGGVAVA--WSGEFLEELWEWRR  227 (385)
T ss_pred             ccc-----CChhh-----hCC------cEEEeeCceeecC-CCCceeEEEEE--CcHHHHHHHHHHHH
Confidence            321     11211     111      3667799999953 5544 565553  67888888776554

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.83  E-value=6.2e-18  Score=175.50  Aligned_cols=174  Identities=14%  Similarity=0.171  Sum_probs=132.5

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCC----hhHHHHH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQY----PLYSASL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y----~~~~~~~  121 (509)
                      +++|+.+. ..+|++.+|++.+        .++++++++++.|+..++.++.++||    +|+++...|    ..+...+
T Consensus        64 Y~r~~~p~-~~~le~~lA~l~g--------~~~al~~~sG~~Ai~~~l~all~~Gd----~Vl~~~~~~~~t~~~~~~~~  130 (403)
T PRK07810         64 YSRYGNPT-VSMFEERLRLIEG--------AEACFATASGMSAVFTALGALLGAGD----RLVAARSLFGSCFVVCNEIL  130 (403)
T ss_pred             eeCCCCch-HHHHHHHHHHHhC--------CCcEEEECChHHHHHHHHHHHhCCCC----EEEEccCCcchHHHHHHHHH
Confidence            56666554 5789999999883        34788888888999999999999998    999887554    4455667


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      +..|++++.++.       .|++.+++++++     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|.
T Consensus       131 ~~~G~~v~~vd~-------~d~~~l~~ai~~-----~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        131 PRWGVETVFVDG-------EDLSQWEEALSV-----PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             HHcCcEEEEECC-------CCHHHHHHhcCc-----CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCC
Confidence            778999999863       278999999887     7999999999999999986   9999999999999999999998


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHH-HHHHh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKA-MLHKS  267 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~-~l~~~  267 (509)
                      .....     .++     +.+     . -++++|++|.++ ..|.++ |+++   .+++.+. .++..
T Consensus       196 ~~~~~-----~~~-----~~g-----a-Divv~S~tK~l~-g~g~~~gG~v~---~~~~~~~~~l~~~  243 (403)
T PRK07810        196 TPLLQ-----RGL-----PLG-----A-DVVVYSGTKHID-GQGRVLGGAIL---GDREYIDGPVQKL  243 (403)
T ss_pred             ccccC-----Chh-----hcC-----C-cEEEccCCceec-CCcCceeEEEE---eChHHHHHHHHHH
Confidence            64432     111     111     1 355779999994 578776 6665   5555444 45543

>PRK05968 hypothetical protein; Provisional

Probab=99.82  E-value=1.3e-17  Score=172.54  Aligned_cols=177  Identities=13%  Similarity=0.114  Sum_probs=129.9

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HH
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----AS  120 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~  120 (509)
                      .+.+|+.+. ..+|++.++++++        .+..+++++++.|+..++.+++++||    +|+++.+.|.+..    ..
T Consensus        56 ~Y~r~~~p~-~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~al~al~~~Gd----~Vl~~~~~y~~t~~~~~~~  122 (389)
T PRK05968         56 IYSRGDNPT-VRAFEEMLAKLEG--------AEDARGFASGMAAISSTVLSFVEPGD----RIVAVRHVYPDAFRLFETI  122 (389)
T ss_pred             cccCCCChh-HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHH
Confidence            344554433 4789999999883        12345556667899999999999998    9999999998743    45


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      +...|+++..++..       |++.+++.+ .     ++++|++++|+||++..   .++++|+++|+++|+++|+|++|
T Consensus       123 ~~~~G~~v~~vd~~-------d~~~l~~~i-~-----~tklV~ie~pt~~~~~~---~dl~~i~~la~~~gi~vivD~a~  186 (389)
T PRK05968        123 LKRMGVEVDYVDGR-------DEEAVAKAL-P-----GAKLLYLESPTSWVFEL---QDVAALAALAKRHGVVTMIDNSW  186 (389)
T ss_pred             HHHcCceEEEeCCC-------CHHHHHHhc-c-----cCCEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCC
Confidence            66679999888632       788998887 3     68999998777765544   78999999999999999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ....+..     ++.     .+     . .++++|+||.++|.++++.|+++   .+++++++++....
T Consensus       187 a~~~~~~-----p~~-----~g-----~-Divv~S~tK~l~g~~~~~gG~i~---~~~~~~~~l~~~~~  236 (389)
T PRK05968        187 ASPVFQR-----PIT-----LG-----V-DLVIHSASKYLGGHSDTVAGVVA---GSKEHIARINAEAY  236 (389)
T ss_pred             cchhccC-----chh-----cC-----C-cEEEeeccccccCCCCeEEEEEE---ECHHHHHHHHHHHH
Confidence            7654321     111     11     1 35567999999543446788887   78888888876543

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=7.4e-18  Score=169.72  Aligned_cols=261  Identities=14%  Similarity=0.175  Sum_probs=187.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-cCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-EDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~g  100 (509)
                      ..|.+-+..++++.+.+++   +++. .++..  .++.+++++|++        ..+.+.++++|.|+.++++++. ++|
T Consensus         9 ~~p~i~~~e~~~v~~vl~s---g~i~-~G~~v--~~FE~~~ae~~G--------~k~ava~~sgT~AL~laL~al~ig~G   74 (374)
T COG0399           9 SRPSIGEEELAAVQEVLKS---GWLT-GGPFV--RRFEQAFAEYLG--------VKYAVAVSSGTAALHLALLALAIGPG   74 (374)
T ss_pred             CCCCcchHHHHHHHHHHHc---CCee-cChHH--HHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhcCCCCC
Confidence            4566778899999999999   7877 35544  789999999983        5678888999999999999764 778


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe-CCCCCCCCCCCHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKEN  179 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NPtG~~~s~~~  179 (509)
                      |    .||++..+|....+.+...|++++.++++++ .|.+|++.+|++|++     ++|+|+.. -..+|       .+
T Consensus        75 D----eVI~ps~TfvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~-----~tKAIipVhl~G~~-------~d  137 (374)
T COG0399          75 D----EVIVPSFTFVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITP-----RTKAIIPVHLAGQP-------CD  137 (374)
T ss_pred             C----EEEecCCchHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHccc-----CCeEEEEehhccCC-------CC
Confidence            7    9999999999999999999999999999976 578999999999998     79999964 44555       35


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCC
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      ++.|.++|++||++||+|.+++......+.   ..-++          . .+.+.||  +|.+.  +| -.|.++.  .+
T Consensus       138 m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk---~vGt~----------G-d~~~fSF~~~K~it--tg-EGGav~t--nd  198 (374)
T COG0399         138 MDAIMALAKRHGLPVIEDAAQAHGATYKGK---KVGSF----------G-DIGAFSFHATKNLT--TG-EGGAVVT--ND  198 (374)
T ss_pred             HHHHHHHHHHcCCeEEEEcchhccCeecCc---ccccc----------c-ceEEEEecCCCCcc--cc-CceEEEe--CC
Confidence            999999999999999999999875533221   11111          0 2334455  69994  77 6777754  89


Q ss_pred             HHHHHHHHHhhhcccCcch-hhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTV-LALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++.++++.++........ .-.     ...+.-++.            .+.+  .|+|+...             .++.
T Consensus       199 ~ela~k~~~lr~hG~~~~~~~~y-----~~~~~G~N~------------rm~~--iqAAigl~-------------QL~~  246 (374)
T COG0399         199 EELAEKARSLRNHGLSRDAVFKY-----LHEELGYNY------------RLTE--IQAAIGLA-------------QLER  246 (374)
T ss_pred             HHHHHHHHHHHHhCcCCCccccc-----eeeeccccc------------CHHH--HHHHHHHH-------------HHHH
Confidence            9999999887762221110 000     000000100            0000  33443322             3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeec
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCN  364 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~  364 (509)
                      ++++.+.-++..+.+.+.|.+++++.+.
T Consensus       247 l~~~~~~R~~~a~~Y~~~l~~~~~~~~p  274 (374)
T COG0399         247 LDEINERRREIAQIYAEALKGLPGITLP  274 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            7777788888888888999988776654

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.82  E-value=8.2e-18  Score=173.46  Aligned_cols=168  Identities=11%  Similarity=0.168  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v  131 (509)
                      .++++.+++++    |    .++++++++++.++..++. ++++||    +|+++.+.|.++...    +...|++++.+
T Consensus        50 ~~le~~la~l~----g----~~~~l~~~sG~~al~~~l~-ll~~Gd----~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v  116 (378)
T TIGR01329        50 TALESLLAKLD----K----ADRAFAFSSGMAALDVITR-LLNNGD----EIIAGDDLYGGTDRLLTQVVPRSGVVVVHV  116 (378)
T ss_pred             HHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHH-HhCCCC----EEEEcCCCchHHHHHHHHHHHHcCcEEEEe
Confidence            45666666655    4    2566777777789988776 778888    999999999886553    45679999988


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +..       |++.+++.+++     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|....     ..
T Consensus       117 d~~-------d~~~le~~i~~-----~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~-----~~  176 (378)
T TIGR01329       117 DTT-------DLDKVKAALGP-----KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL-----LC  176 (378)
T ss_pred             CCC-------CHHHHHHhcCc-----CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc-----cC
Confidence            753       78999998876     7999999999999999987   9999999999999999999985421     11


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .++ ..    +     . -++++|++|.++|..++..|++++  .++.+.+++...+.
T Consensus       177 ~~l-~~----g-----~-Di~v~S~tK~l~G~~~~~~G~v~~--~~~~~~~~~~~~~~  221 (378)
T TIGR01329       177 NPL-EL----G-----A-DIVYHSATKFLAGHSDVMAGVLAV--KGEEIAKKVYFLQN  221 (378)
T ss_pred             Chh-hc----C-----C-cEEEEecceeccCCccceeEEEEe--CcHHHHHHHHHHHH
Confidence            222 11    1     1 356779999886655688999873  56777777776554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=4.8e-18  Score=169.31  Aligned_cols=330  Identities=12%  Similarity=0.110  Sum_probs=218.3

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC-CCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD-GKK  104 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd-~~~  104 (509)
                      -+|.+++++.+++.+.-..+.. |.     .+.+.++++.|.+..+   ..+.|+++++++||++.+++..++-+. +++
T Consensus        59 ~hP~iv~al~~Q~~kl~h~sn~-~~-----~~~~~~la~~L~~~s~---~~d~vff~NSGaEA~EaAiKlARk~~~~~~k  129 (404)
T COG4992          59 CHPALVEALKEQAEKLWHVSNL-FY-----NEPQAELAEKLVELSP---FADRVFFCNSGAEANEAALKLARKYTGDPEK  129 (404)
T ss_pred             CCHHHHHHHHHHHHHhhhcccc-cC-----ChHHHHHHHHHHhhCc---cccEEEEcCCcHHHHHHHHHHHHHHcCCCCC
Confidence            3799999999988883222222 22     2244455555543322   378999999999999999999876543 456


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCEEEEE----ecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-CCCH
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNMEQIGY----YLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGNPTGQ-VLTK  177 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~~~~v----~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-~~s~  177 (509)
                      .+||....+|++-....-..+.+...-    |+.+.-.+  --|++.+++++++     ++.+|++..-+...|+ ..++
T Consensus       130 ~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-----~taAvivEPIQGEgGV~~~~~  204 (404)
T COG4992         130 SKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-----DTAAVIVEPIQGEGGVIPAPP  204 (404)
T ss_pred             cEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc-----CeEEEEEecccCCCCCCCCCH
Confidence            789999999997654443333222110    22111000  1289999999999     7999999988999997 6677


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +.++.+.++|++||+++|.||++.++..+|  ++.....+  .+.++        +.++.|.+ | .|+++|.++   ++
T Consensus       205 ~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG--k~fA~e~~--gV~PD--------I~tlaK~L-g-GG~PigA~l---a~  267 (404)
T COG4992         205 EFLKALRELCDEHGALLILDEVQTGLGRTG--KLFAYEHY--GVEPD--------ILTLAKAL-G-GGFPIGAML---AT  267 (404)
T ss_pred             HHHHHHHHHHHHhCeEEEEeccccCCCccc--hHHHHHHh--CCCCC--------EEEeeccc-c-CCccceeeE---Ec
Confidence            899999999999999999999999998876  34444433  23332        44679999 6 899999998   56


Q ss_pred             HHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +.+.+.+..... .+.+.|.+++++                              +.++++.+.+               
T Consensus       268 ~~~~~~~~~G~HgSTfGGNpLacAv------------------------------~~a~l~~l~~---------------  302 (404)
T COG4992         268 EEIASAFTPGDHGSTFGGNPLACAV------------------------------ALAVLEVLLE---------------  302 (404)
T ss_pred             hhhhhcCCCCcccCCCCcCHHHHHH------------------------------HHHHHHHHcc---------------
Confidence            666666654433 456777776666                              6666666654               


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-CCeecc--CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIE-GMSCNP--VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                       +.+.+..++.-+++.+.|+++. .+.++.  ..-|.++-+++..+.            ...+ +.+.+.+.|+.+.+..
T Consensus       303 -e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~------------~a~~-~~~~~~~~gvL~~~a~  368 (404)
T COG4992         303 -EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY------------RARD-IVRALREEGVLVLPAG  368 (404)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc------------cHHH-HHHHHHHCCeEEecCC
Confidence             3344445555555555555531 111221  123445545554221            0223 4566677899988522


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLK  491 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~  491 (509)
                                                                            ..        .+|+.-.  .++++|+
T Consensus       369 ------------------------------------------------------~~--------ViR~~PpL~i~~eei~  386 (404)
T COG4992         369 ------------------------------------------------------PN--------VIRFLPPLVITEEEID  386 (404)
T ss_pred             ------------------------------------------------------CC--------eEEecCCccCCHHHHH
Confidence                                                                  11        6777644  8999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy13922        492 AMLEKFREFHEEFLAK  507 (509)
Q Consensus       492 ~~~~~l~~~~~~~~~~  507 (509)
                      +++++|.++++++..+
T Consensus       387 ~~~~~l~~~l~~~~~~  402 (404)
T COG4992         387 EALDALERALAAASAR  402 (404)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999999887654

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.81  E-value=1.4e-17  Score=176.96  Aligned_cols=210  Identities=14%  Similarity=0.217  Sum_probs=148.3

Q ss_pred             CCCC--CCHHHHHHHHHHHhcccCCCcccC---CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHH--HH
Q psy13922         22 DDPR--FPDDVKQRAQAVLDGCRGQSVGSY---TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSV--LK   94 (509)
Q Consensus        22 ~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y---~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~--~~   94 (509)
                      |.+.  .|+.+.+++.+.-.   +..++.|   +..+|..+++.++++++.+.+|.+  ...+..++|+.+.+..+  ++
T Consensus        76 G~~~~~~~p~i~~~~~~~~~---~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r  150 (481)
T PRK04366         76 GSCTMKYNPKINEKVARLPG---FAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIR  150 (481)
T ss_pred             cccCCCCCHHHHHHHHhCcc---hhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHH
Confidence            5455  48888888765421   1244558   456799999999999999998853  33455566666555433  22


Q ss_pred             -HhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         95 -LLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        95 -~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                       .+.++||.++++|+++.|.|..+...++..|++++.++.++  ++.+|++.|++.+.+     ++++|++++|| |||.
T Consensus       151 ~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~--~~~~D~e~L~~~i~~-----~t~~V~v~~Pn-~tG~  222 (481)
T PRK04366        151 AYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE--DGLVDLEALKAAVGE-----DTAALMLTNPN-TLGL  222 (481)
T ss_pred             HHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC--CCCcCHHHHHhhccc-----CCeEEEEeCCC-Cccc
Confidence             23456654566999999999999999999999999999864  358899999999977     79999999988 9996


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC----CCeeE
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC----GLRGG  249 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~----Glr~G  249 (509)
                      .  ..++++|+++|+++|+++|+|.++.....+ .   .+..    +.     +.+++ ++|.+|.+ |.|    |-.+|
T Consensus       223 ~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g-~---~~~~----~~-----GaD~~-~~~~hK~l-~~P~g~Ggp~~G  285 (481)
T PRK04366        223 F--ERNILEIAEIVHEAGGLLYYDGANLNAILG-K---ARPG----DM-----GFDVV-HLNLHKTF-STPHGGGGPGSG  285 (481)
T ss_pred             c--chHHHHHHHHHHHcCCEEEEEecChhhhcc-c---CCcc----cc-----CCCEE-EEechhhc-CCCCCCCCCCee
Confidence            4  357999999999999999999998532111 0   1111    11     12244 55889998 544    33467


Q ss_pred             EEeeecCCHHHHHHH
Q psy13922        250 YSEVINLDPGVKAML  264 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l  264 (509)
                      ++.   ..+++.+.+
T Consensus       286 ~l~---~~~~~~~~l  297 (481)
T PRK04366        286 PVG---VKEELAPFL  297 (481)
T ss_pred             eee---ehhhhHhhC
Confidence            776   355565554

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.81  E-value=1.2e-17  Score=175.52  Aligned_cols=225  Identities=13%  Similarity=0.080  Sum_probs=137.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+........| ......++.+.+++++    +  -..+.+++++++++|...+++..+.-..  ++.
T Consensus        61 ~p~v~~a~~~q~~~~~~~~~~~~-~~~~~~~la~~L~~~~----~--~~~~~v~f~~SGseA~e~AlklAr~~tg--r~~  131 (433)
T PRK08117         61 HPKVVQAIKEQADKLMHGPSGVI-YYESILKLAEELAEIT----P--GGLDCFFFSNSGAEAIEGALKLAKHVTK--RPY  131 (433)
T ss_pred             CHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhC----C--CCCCEEEEeCcHHHHHHHHHHHHHHhcC--CCe
Confidence            68899999999987322111112 1222234444444433    1  1235899999999999999997654321  347


Q ss_pred             EEEcCCCChhHHHHHHhc-C--C-----------EEEEEecCCCC--CCC--------CCHHHHHHHHHhhhccCCceEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-N--M-----------EQIGYYLDESK--QWG--------LPISELERSITEARKHCNPRAI  162 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g--~-----------~~~~v~~~~~~--~~~--------~d~~~L~~~i~~~~~~~~~~~i  162 (509)
                      |+...-.|++........ +  .           .+..+|.....  .+.        -|++.+++.++......++.+|
T Consensus       132 ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aav  211 (433)
T PRK08117        132 IISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAV  211 (433)
T ss_pred             EEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            888888888865443211 1  0           01222221100  001        1456677766542111257788


Q ss_pred             EEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      ++.......|. ..+++++++|.++|++||+++|+||+|.+|..++.  ......+  ++.++        +.++||.+ 
T Consensus       212 i~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~--~~~~~~~--gv~pD--------i~t~sK~l-  278 (433)
T PRK08117        212 IIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE--WFAAQTF--GVVPD--------IMTIAKGI-  278 (433)
T ss_pred             EECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc--chhHhhc--CCCCC--------Eeehhhhc-
Confidence            87656666676 56899999999999999999999999998766542  2111111  12111        45899999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      | +|+|+|+++   .++++++.+..... .+.+.+.+
T Consensus       279 g-~G~pigav~---~~~~i~~~~~~~~~~~T~~~np~  311 (433)
T PRK08117        279 A-SGLPLSAVV---ASKELMEQWPLGSHGTTFGGNPV  311 (433)
T ss_pred             c-CCCcceeEE---EcHHHHhhccCCCCCCCCCcCHH
Confidence            6 899999998   78898887753222 23344555

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=5.4e-17  Score=167.23  Aligned_cols=177  Identities=19%  Similarity=0.235  Sum_probs=127.1

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~  121 (509)
                      +.+|+.+. ...|++.++++++       ....+++++ ++.++..++ .++++||    +|+++.|.|.+...    .+
T Consensus        44 y~r~~~p~-~~~Le~~lA~l~g-------~~~~~~~~s-G~aai~~~~-~~l~~Gd----~Viv~~~~y~~~~~~~~~~~  109 (377)
T PRK07671         44 YSRTGNPT-RAALEELIAVLEG-------GHAGFAFGS-GMAAITAVM-MLFSSGD----HVILTDDVYGGTYRVMTKVL  109 (377)
T ss_pred             cCCCCChH-HHHHHHHHHHHhC-------CCceEEeCC-HHHHHHHHH-HHhCCCC----EEEECCCccchHHHHHHHHH
Confidence            44444332 4778888888873       123455445 567887665 5778888    99999999985433    34


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ...|++++.++.       .|++.+++++++     ++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|.
T Consensus       110 ~~~G~~v~~v~~-------~d~~~l~~ai~~-----~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~  174 (377)
T PRK07671        110 NRFGIEHTFVDT-------SNLEEVEEAIRP-----NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFM  174 (377)
T ss_pred             hcCCeEEEEECC-------CCHHHHHHhcCC-----CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCC
Confidence            557999998863       278999999976     7999999999999999866   8889999999999999999997


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ...+.     .++ ..    +     . .++++|+||.+.|.++.-.|++++  .++++++++...+.
T Consensus       175 ~~~~~-----~p~-~~----g-----~-Divv~S~sK~l~G~~~~~~G~~v~--~~~~l~~~~~~~~~  224 (377)
T PRK07671        175 TPYWQ-----SPI-SL----G-----A-DIVLHSATKYLGGHSDVVAGLVVV--NSPELAEDLHFVQN  224 (377)
T ss_pred             ccccC-----Chh-hh----C-----C-eEEEecCcccccCCccceeEEEEe--CcHHHHHHHHHHHH
Confidence            53321     111 11    1     1 466789999995444445666653  67888888877665

>TIGR01814 kynureninase kynureninase

Probab=99.81  E-value=1.5e-17  Score=173.51  Aligned_cols=192  Identities=15%  Similarity=0.157  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHHHhcccCCCc-ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSV-GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~-~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      |..+.+++.+.+........ ..|....+...+.+++.+ + +.+|  .++++|++|+|+|++++.++.++.++++ +++
T Consensus        40 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~~v~~~~~~t~~l~~~~~~~~~~~~-~~~  114 (406)
T TIGR01814        40 PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKEDEVVVMNTLTINLHLLLASFYKPTP-KRY  114 (406)
T ss_pred             cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCCcEEEeCCchHHHHHHHHHhcCCcC-Ccc
Confidence            88899999888765321111 111101111222222222 1 3335  5788999999999999999999866653 123


Q ss_pred             eEEEcCCCChhHH----HHHHhcCCEE----EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        106 GVLIPIPQYPLYS----ASLAEFNMEQ----IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       106 ~Vlv~~p~y~~~~----~~~~~~g~~~----~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      .|++....|....    ..++..|+++    +.++.+.  .+.+|++.+++.++...  +++++|++++++|.||..++ 
T Consensus       115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~--~g~~~~~~l~~~~~~~~--~~t~lv~~~~v~~~tG~~~~-  189 (406)
T TIGR01814       115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPRE--EETLRLEDILDTIEKNG--DDIAVILLSGVQYYTGQLFD-  189 (406)
T ss_pred             EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCC--CCccCHHHHHHHHHhcC--CCeEEEEEeccccccceecC-
Confidence            6888888888733    3445678887    4454433  34678999998886311  27899999999999999998 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                        +++|.++|+++|+++++|++++....     ...+..    .     +.+++ +.|.+|++.|.||
T Consensus       190 --~~~i~~~~~~~g~~~~vD~aq~~G~~-----~id~~~----~-----gvD~~-~~s~hK~l~g~pG  240 (406)
T TIGR01814       190 --MAAITRAAHAKGALVGFDLAHAVGNV-----PLDLHD----W-----GVDFA-CWCTYKYLNAGPG  240 (406)
T ss_pred             --HHHHHHHHHHcCCEEEEEcccccCCc-----cccccc----C-----CCCEE-EEcCccccCCCCC
Confidence              89999999999999999999987322     122211    1     22244 5588998743456

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=3.2e-17  Score=172.16  Aligned_cols=225  Identities=12%  Similarity=0.067  Sum_probs=141.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+..   +.  .......+.+.++++.|.+..+.  .-+.++++++++||++.+++..+.-..  +..
T Consensus        59 ~p~v~~Ai~~ql~~~~---~~--~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGsEAve~AlklAr~~tg--r~~  129 (443)
T PRK08360         59 NPRVVKAIKEQTDKLI---HY--TPIYGFPVEPLLLAEKLIEIAPG--DNPKVSFGLSGSDANDGAIKFARAYTK--RRK  129 (443)
T ss_pred             CHHHHHHHHHHHHhcc---Cc--cccccCcHHHHHHHHHHHHhCCC--CCCEEEEcCCHHHHHHHHHHHHHHhcC--CCe
Confidence            7899999999998722   11  11111133445555555443321  225899999999999999998765432  457


Q ss_pred             EEEcCCCChhHHHHHHh-cCC------------EEEEEecCCC--CCCC--------CCHHHHHHHHHhhhccCCceEEE
Q psy13922        107 VLIPIPQYPLYSASLAE-FNM------------EQIGYYLDES--KQWG--------LPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~--~~~~--------~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      |+.....|++....+.. .|.            .+..+|....  ..+.        -+++.+++.++......++++|+
T Consensus       130 ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi  209 (443)
T PRK08360        130 ILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALF  209 (443)
T ss_pred             EEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEE
Confidence            88888888886533222 121            1222221110  0011        12345566665311112688988


Q ss_pred             EeCCCCCCCCCCC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINPGNPTGQVLT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p~NPtG~~~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      +...+||+|.+++ ++++++|.++|++||+++|+||+|.+|.+.+.  +.+....  ++.+     +++   ++||.+ |
T Consensus       210 ~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~--~~a~~~~--~~~p-----Dii---tlsK~l-~  276 (443)
T PRK08360        210 AEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK--WFAIEHF--GVEP-----DII---TLGKPL-G  276 (443)
T ss_pred             ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--chhhhhc--CCCC-----CEE---Eecccc-c
Confidence            8767899998776 66899999999999999999999999876542  2222211  2222     143   679999 6


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                       +|+|+||++   .++++++.+..... .+.+.+.+
T Consensus       277 -~G~pigav~---~~~~i~~~~~~~~~~~T~~~~p~  308 (443)
T PRK08360        277 -GGLPISATI---GRAEIMDSLPPLAHAFTLSGNPV  308 (443)
T ss_pred             -CCceeEEEE---EcHHHHhhhcCCCCCCCCCcCHH
Confidence             899999998   78899988864422 23344444

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.80  E-value=5.9e-17  Score=168.50  Aligned_cols=219  Identities=12%  Similarity=0.073  Sum_probs=138.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----C-C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----V-D  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----g-d  101 (509)
                      +|.+.+++.+++...   .+.  +... ..+...++++.+.+..+   ..+.+++++++++|++.+++..+.-    | +
T Consensus        58 ~p~v~~ai~~q~~~~---~~~--~~~~-~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~  128 (408)
T PRK04612         58 DPDLVAALTEQAGKL---WHT--SNVF-YSAPPLKLAEELVTASR---FAEKVFLCNSGTEANEAAIKLVRKWASSQGRP  128 (408)
T ss_pred             CHHHHHHHHHHHHhc---ccc--cccc-CCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCC
Confidence            688999999998872   111  1111 12334455555543322   1268999999999999999887642    2 1


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhc-CCEEEE---EecCCC---CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEF-NMEQIG---YYLDES---KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~---~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      +++..|+....+|++....+... |.....   -+..+.   -. ..|++.+++.+..     +..+.++..|.+++|-+
T Consensus       129 ~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~-----~~~aavi~eP~~~~gg~  202 (408)
T PRK04612        129 ADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVD-FNDVEALEAAMAG-----GDVAAVMLEPIQGEGGV  202 (408)
T ss_pred             CCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcC-CCCHHHHHHhhCC-----CCEEEEEECCccCCCCC
Confidence            13457999999999876544332 211110   011100   01 1378888888854     34555566677777755


Q ss_pred             CC--HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        175 LT--KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       175 ~s--~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ++  ++++++|.++|++||+++|+||+|..|...+  ..  +.....+.        +..+.+|||.+ | +|+|+||++
T Consensus       203 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~--~a~~~~~~--------~pdi~t~~K~l-~-~G~piga~~  268 (408)
T PRK04612        203 MPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG--TL--FAHWQEQV--------TPDIVTLAKAL-G-GGFPIGAML  268 (408)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC--ch--hhhhhcCC--------CCCEEEEcchh-c-CCCceEEEE
Confidence            44  6799999999999999999999999876654  12  11111111        23366889999 5 899999998


Q ss_pred             eecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        253 VINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                         .++++++.+..... .+.+.+.+
T Consensus       269 ---~~~~~~~~~~~~~~~~t~~~~p~  291 (408)
T PRK04612        269 ---AGPKVAETMQFGAHGTTFGGNPL  291 (408)
T ss_pred             ---ECHHHHhhhcCCCcCCCCCCCHH
Confidence               67888887765322 23344555

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=2.3e-17  Score=172.46  Aligned_cols=224  Identities=11%  Similarity=0.072  Sum_probs=138.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+....... +.+    .+....+++.+.+..+.. ..+.++++++++||++.+++..+....  +..
T Consensus        58 ~p~v~~ai~~ql~~l~~~~~~-~~~----~~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~e~AlklAr~~tg--r~~  129 (425)
T PRK07495         58 HPRVIAAVKAQLDRFTHTCHQ-VVP----YENYVRLAERLNALVPGD-FAKKTIFVTTGAEAVENAVKIARAATG--RSA  129 (425)
T ss_pred             CHHHHHHHHHHHhhccCcccC-ccC----CHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHhhC--CCe
Confidence            688999999999873211111 112    223344454444332211 125899999999999999998765422  447


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCCCCCCC----HHHHHHHHHhhhccCCceEEEEe-CC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESKQWGLP----ISELERSITEARKHCNPRAIVII-NP  167 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~~d----~~~L~~~i~~~~~~~~~~~ivi~-~p  167 (509)
                      |+.....|++........ |.             .+..+|..... .+.+    ++.+++.+.......++++|++. ..
T Consensus       130 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~  208 (425)
T PRK07495        130 VIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQ  208 (425)
T ss_pred             EEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhccCCCceEEEEECCcc
Confidence            999999999875433221 10             12233322110 0222    44456666431111267888884 55


Q ss_pred             CCCCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC
Q psy13922        168 GNPTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL  246 (509)
Q Consensus       168 ~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl  246 (509)
                      +| +| ..+|++.+++|.++|++||+++|+||+|.+|..++.  .......  ++.+        -+.++||.+ | +|+
T Consensus       209 g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~~a~~~~--gv~p--------Di~tlsK~l-~-~G~  273 (425)
T PRK07495        209 GE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK--LFAMEHH--EVAA--------DLTTMAKGL-A-GGF  273 (425)
T ss_pred             CC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC--ceeeccc--CCCC--------CEEeehhhh-c-CCc
Confidence            66 78 468999999999999999999999999998866542  2122111  1111        156889999 5 899


Q ss_pred             eeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        247 RGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       247 r~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      |+|+++   .++++++.+..... .+++.+.+
T Consensus       274 pigav~---~~~~i~~~~~~~~~~~T~~~~pl  302 (425)
T PRK07495        274 PLAAVT---GRAEIMDAPGPGGLGGTYGGNPL  302 (425)
T ss_pred             cceEEE---EcHHHHhccCCCCcCCCCCCCHH
Confidence            999998   78888887754322 33445555

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.80  E-value=8.4e-18  Score=176.25  Aligned_cols=206  Identities=11%  Similarity=-0.015  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.+.+++.+++.+   .. ..|.+..+..+|.+.+++.+    .   ..+.+++++++++|+..+++..+....  ++.
T Consensus        68 ~p~i~~a~~~~~~~---~~-~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGseA~e~Aik~a~~~~g--~~~  134 (426)
T PRK00062         68 HPEVVEAVIEAAEK---GL-SFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTEATMSAIRLARGYTG--RDK  134 (426)
T ss_pred             CHHHHHHHHHHHHh---CC-cCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHHHHHHHHHHHHHHhC--CCe
Confidence            68999999999987   22 22455555566777776654    1   246899999999999999998765422  348


Q ss_pred             EEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |+...++|+++...+... |.            ....++.....--..|++.+++.+.+..  .++++|++......+|.
T Consensus       135 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~aaiivEpv~~~~G~  212 (426)
T PRK00062        135 IIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYG--DEIAAVIVEPVAGNMGV  212 (426)
T ss_pred             EEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCC--CcEEEEEEeCCcCCCCC
Confidence            999999999986443221 10            0000000000000137899998886421  26778888644444787


Q ss_pred             CCC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 VLT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 ~~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +.+ ++++++|.++|++||+++|+||+|..+.. +.  .... +. .+..++        +.++||.+ | .|+++|+++
T Consensus       213 ~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~--~~~~-~~-~~~~pD--------i~~~gK~l-~-~G~p~ga~~  277 (426)
T PRK00062        213 VPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-AL--GGAQ-GY-YGVTPD--------LTTLGKII-G-GGLPVGAFG  277 (426)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CC--ccHH-HH-hCCCcc--------hHhhhhHh-h-CCCcceeee
Confidence            665 88999999999999999999999998833 22  1111 11 111111        34889999 5 899999997


Q ss_pred             eecCCHHHHHHHH
Q psy13922        253 VINLDPGVKAMLH  265 (509)
Q Consensus       253 ~~~~~~~~~~~l~  265 (509)
                         .++++++.+.
T Consensus       278 ---~~~~i~~~~~  287 (426)
T PRK00062        278 ---GRREIMEQLA  287 (426)
T ss_pred             ---EHHHHHHhhc
Confidence               7889999885

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.80  E-value=3.4e-17  Score=168.38  Aligned_cols=166  Identities=14%  Similarity=0.148  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v  131 (509)
                      ..|++.+|+++.        .+++++++|+++|+..++.++.++||    +|+++.|.|.+....    ++..|+++..+
T Consensus        53 ~~lE~~lA~l~g--------~~~~~~~~sG~~Ai~~al~all~~GD----~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~  120 (377)
T TIGR01324        53 FALQDAMCELEG--------GAGCYLYPSGLAAVTNSILAFVKAGD----HVLMVDSAYEPTRYFCDIVLKRMGVDITYY  120 (377)
T ss_pred             HHHHHHHHHHhC--------CCcEEEECcHHHHHHHHHHHhcCCCC----EEEEcCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence            589999998873        46899999999999999999999998    999999999877643    35678887776


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +..       +.+.+++.+++     ++++|++++|+||+|..   .++++|+++|+++|+++|+|++|......     
T Consensus       121 d~~-------~~e~l~~~i~~-----~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~~-----  180 (377)
T TIGR01324       121 DPL-------IGEDIATLIQP-----NTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLLF-----  180 (377)
T ss_pred             CCC-------CHHHHHHhcCC-----CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcccccc-----
Confidence            422       23778888776     79999999999999887   45999999999999999999999864321     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHh
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~  267 (509)
                      .++     +.+     . -++++|++|.++|.+++.+|+++   .+++.++.+...
T Consensus       181 ~pl-----~~g-----a-Divv~S~tK~l~G~~d~~gG~v~---~~~~~~~~l~~~  222 (377)
T TIGR01324       181 KPL-----EHG-----V-DISIQAGTKYLVGHSDIMIGTVV---ANARTWDQLREH  222 (377)
T ss_pred             Ccc-----ccC-----c-eEEEecCceeccCCCCceEEEEE---eCHHHHHHHHHH
Confidence            111     111     1 36688999999777778889887   677777777643

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.80  E-value=9.4e-17  Score=165.53  Aligned_cols=176  Identities=16%  Similarity=0.157  Sum_probs=113.4

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEe
Q psy13922         53 PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY  132 (509)
Q Consensus        53 ~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~  132 (509)
                      .-..++++.+|++++    .   ++.+++++|.+ ++..++..+.++++    .|++..-.|......++......+.++
T Consensus        56 ~~~~~~e~~la~~~~----~---~~~l~~~sG~~-a~~~~~~~~~~~~d----~ii~d~~~H~sv~~~~~~~~~~~~~~~  123 (370)
T PRK05937         56 SLLDDLEHKIAHFHG----A---PEAFIVPSGYM-ANLGLCAHLSSVTD----YVLWDEQVHISVVYSLSVISGWHQSFR  123 (370)
T ss_pred             HHHHHHHHHHHHHhC----C---CeEEEECChHH-HHHHHHHHhCCCCC----EEEEEhhhhHHHHHHHHHcCCceEEec
Confidence            345678888888773    1   23466677664 55555656656665    777767777777777666543333342


Q ss_pred             cCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        133 LDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       133 ~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                             ..|++.|++.++...+. +++.+|++++++|++|.+.|   +++|.++|+++|+++++|++|+...++..  .
T Consensus       124 -------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~--g  191 (370)
T PRK05937        124 -------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDD--G  191 (370)
T ss_pred             -------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--C
Confidence                   35899999999753221 24556778999999999998   88999999999999999999987444321  1


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      ..+.   ...+..  +. .+.+.|+||.+ |..|.  | ++   ..+++.+.+.
T Consensus       192 ~g~~---~~~~~~--~~-~~~~~tlsK~~-g~~G~--~-vl---~~~~~~~~~~  232 (370)
T PRK05937        192 KGFC---HSLGYE--NF-YAVLVTYSKAL-GSMGA--A-LL---SSSEVKQDLM  232 (370)
T ss_pred             CchH---HhhCCC--CC-cEEEEechhhh-hcCce--E-EE---cCHHHHHHHH
Confidence            1111   111100  11 24577999999 76663  3 33   4566666554

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.80  E-value=2.9e-17  Score=171.56  Aligned_cols=163  Identities=19%  Similarity=0.174  Sum_probs=129.3

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~  121 (509)
                      +++|+.+. ..+|++.++++++        .+..++++++++|+..++.+++++||    +|+++.+.|.+..    ..+
T Consensus        51 ysr~~~p~-~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~~l~~~Gd----~Vl~~~~~y~~t~~~~~~~~  117 (418)
T TIGR01326        51 YSRLMNPT-TDVLEQRIAALEG--------GVAALAVASGQAAITYAILNLAQAGD----NIVSSSYLYGGTYNLFKHTL  117 (418)
T ss_pred             eECCCChh-HHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCC----EEEEECCCcHHHHHHHHHHH
Confidence            45555443 4788899998873        25688899999999999999999998    9999999987643    445


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      +..|++++.++.+       |++.+++.+++     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|.
T Consensus       118 ~~~G~~v~~v~~~-------d~~~l~~~l~~-----~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~  182 (418)
T TIGR01326       118 KRLGIEVRFVDPD-------DPEEFEKAIDE-----NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFA  182 (418)
T ss_pred             HHcCcEEEEECCC-------CHHHHHHhcCc-----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCc
Confidence            6789999988742       78999998876     7999999999999999987   8899999999999999999997


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ....     ..++ .          ....++++|+||.+ |.+|+|+||+++
T Consensus       183 ~~~~-----~~~l-~----------~g~Divv~S~sK~l-~g~G~~lGg~v~  217 (418)
T TIGR01326       183 TPYL-----CRPI-D----------HGADIVVHSATKYI-GGHGTAIGGVIV  217 (418)
T ss_pred             hhhc-----CCch-h----------cCCeEEEECccccc-cCCccceEEEEE
Confidence            4311     1111 1          11257788999999 578999999983

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=1.1e-16  Score=167.17  Aligned_cols=155  Identities=18%  Similarity=0.206  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~  130 (509)
                      ...|.+.++++.+        .+..++++|+++|+..++..++++||    +|+++.+.|.+..    ..++..|++++.
T Consensus        66 ~~~Le~~lA~leg--------~~~al~~~sG~~Ai~~al~~ll~~GD----~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~  133 (431)
T PRK08248         66 TDVFEKRIAALEG--------GIGALAVSSGQAAITYSILNIASAGD----EIVSSSSLYGGTYNLFAHTLPKLGITVKF  133 (431)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEccCchhhHHHHHHHHHHhCCEEEEE
Confidence            3678888888872        45788999999999999999999998    9999999887643    445678999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++..       |++.+++++++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|....     .
T Consensus       134 vd~~-------d~e~l~~ai~~-----~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~-----~  193 (431)
T PRK08248        134 VDPS-------DPENFEAAITD-----KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPY-----L  193 (431)
T ss_pred             ECCC-------CHHHHHHhcCC-----CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCccc-----c
Confidence            8752       78999998876     7999999999999999988   7899999999999999999986311     1


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ..++     +.+     . .++++|++|.+ |.+|.++|++++
T Consensus       194 ~~pl-----~~g-----a-Divv~S~tK~l-gg~g~~~Gg~v~  224 (431)
T PRK08248        194 LRPI-----EHG-----A-DIVVHSATKFI-GGHGTSIGGVIV  224 (431)
T ss_pred             CChh-----HcC-----C-CEEEEcCcccc-CCCCCceEEEEE
Confidence            1221     111     1 35577999999 679999999874

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.79  E-value=3e-17  Score=171.18  Aligned_cols=337  Identities=13%  Similarity=0.104  Sum_probs=199.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCC-CCCcEEE-eCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA-DWQDVIL-SAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~-~~~~i~~-t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      +|.|.+++.+++.+..  ...  .. ....+.+..+++.|.+....+. ..+.+++ +++++||++.+++..+.-..  |
T Consensus        53 ~p~v~~ai~~ql~~~~--~~~--~~-~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg--r  125 (412)
T TIGR02407        53 NPKLKQALIDYLADDG--IIH--SL-DMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTG--R  125 (412)
T ss_pred             CHHHHHHHHHHHhhcc--cee--cc-ccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcC--C
Confidence            7899999999998621  111  11 1113344555555543211010 1124656 48899999999998875432  4


Q ss_pred             CeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCCCC-CCCHHHHHHHHHhhhcc-CCceEEEEeCCCC
Q psy13922        105 PGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESKQW-GLPISELERSITEARKH-CNPRAIVIINPGN  169 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~~-~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~N  169 (509)
                      ++|+....+|++....+... |.            .+..+|....... .-+++.+++.+.+.... .++.+|++...++
T Consensus       126 ~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g  205 (412)
T TIGR02407       126 SNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQG  205 (412)
T ss_pred             CeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccC
Confidence            58999999999876544322 11            1222222110000 01366788888643211 2578888877788


Q ss_pred             CCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC-CCe
Q psy13922        170 PTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC-GLR  247 (509)
Q Consensus       170 PtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~-Glr  247 (509)
                      +.|. .+|++.+++|.++|++||+++|+||++.+|...+.  ..+...  .++.++        +.++||.+ | + |+|
T Consensus       206 ~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~a~~~--~~v~PD--------i~~~~K~l-g-~~G~p  271 (412)
T TIGR02407       206 EGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT--FFSFEP--AGIEPD--------IVCLSKSI-S-GYGLP  271 (412)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hHHhcc--cCCCCC--------EEEechhc-c-CCccc
Confidence            8898 78999999999999999999999999998765431  111111  122222        33678999 5 6 999


Q ss_pred             eEEEeeecCCHHHHHHHHHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      +|+++   .++++ +.+.... ..+++.+.+++++                              +++++..++.     
T Consensus       272 igav~---~~~~~-~~~~~~~~~~T~~gnpl~~aa------------------------------a~a~l~~~i~-----  312 (412)
T TIGR02407       272 LALTL---IKPEL-DVWKPGEHNGTFRGNNLAFVT------------------------------ATAALEYYWS-----  312 (412)
T ss_pred             eeEEE---Echhh-hccCCCccCCCCCccHHHHHH------------------------------HHHHHHHHhc-----
Confidence            99998   56665 4443211 1233444443333                              4555554332     


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                      +   .+..++.+++.+.++++.+.+.+.+   |++.......|.++|+.+..+.            .... +...+.++|
T Consensus       313 ~---~~l~~~~~~~g~~l~~~l~~l~~~~---~~~~~~vrg~Gl~~~l~l~~~~------------~~~~-~~~~~~~~G  373 (412)
T TIGR02407       313 D---DAFEKAVQRKSEIIQERLDRIVAEY---PELIKQVRGRGLMQGIECGDGD------------LAGK-IAKAAFENG  373 (412)
T ss_pred             c---cHHHHHHHHHHHHHHHHHHHHHhhC---CCceEeeecceeEEEEEecChH------------HHHH-HHHHHHHCC
Confidence            1   2233445555566655555444443   2222334456888897775211            1122 345566789


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |.+.+...+.                                                    .        .+|++..  
T Consensus       374 v~v~~~~~~~----------------------------------------------------~--------~lr~~p~l~  393 (412)
T TIGR02407       374 LIIETSGPND----------------------------------------------------E--------VIKLLPPLT  393 (412)
T ss_pred             CEEeccCCCC----------------------------------------------------C--------EEEEECCCC
Confidence            9997632111                                                    1        5776655  


Q ss_pred             cChHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~  502 (509)
                      .+++++++++++|.++++
T Consensus       394 ~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       394 IDEETLQQGLDILEQAVE  411 (412)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            899999999999999885

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.79  E-value=2.6e-17  Score=171.54  Aligned_cols=205  Identities=10%  Similarity=0.062  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC------
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV------  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g------  100 (509)
                      +|.|.+++.+.+........ .+ ...-..++.+.+++++    +    .+.+++++++++|+..+++.++..+      
T Consensus        55 ~p~v~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~  124 (401)
T TIGR01885        55 HPKIVKALTEQAQKLTLSSR-AF-YNDVFGEFAEYVTKLF----G----YDKVLPMNTGAEAVETAIKLARKWGYKVKGI  124 (401)
T ss_pred             CHHHHHHHHHHHHhcccccc-cc-CCHHHHHHHHHHHhhc----C----CCEEEEeCccHHHHHHHHHHHHHHhhhhcCC
Confidence            78999999999887321111 11 1222244555555443    3    3689999999999999999874321      


Q ss_pred             CCCCCeEEEcCCCChhH-HHHHHhcCC------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922        101 DGKKPGVLIPIPQYPLY-SASLAEFNM------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~-~~~~~~~g~------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      .+.++.|+...-+|++. ...+...+.            .+..++       ..|++.|++.+++..  .++.+|++..+
T Consensus       125 ~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~l~~~~--~~~~avi~E~v  195 (401)
T TIGR01885       125 PENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIP-------YNNLEALEEALEDHG--PNVCAFIVEPI  195 (401)
T ss_pred             CCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeC-------CCCHHHHHHHHHhcC--CCEEEEEEeCc
Confidence            01134788888888864 333332221            122222       127899999887531  26778888889


Q ss_pred             CCCCCCCCC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC
Q psy13922        168 GNPTGQVLT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL  246 (509)
Q Consensus       168 ~NPtG~~~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl  246 (509)
                      ++++|...+ .+++++|.++|++||+++|+||+|..+.+++  .+.+. +. .+..     .+++   ++||.+ |..|+
T Consensus       196 ~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G--~~~~~-~~-~~~~-----~di~---~~gK~l-~~g~~  262 (401)
T TIGR01885       196 QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG--KLLCV-DH-ENVK-----PDIV---LLGKAL-SGGVY  262 (401)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--hhhHH-hh-cCCC-----CCEE---Eeeccc-cCCCC
Confidence            999999775 5579999999999999999999998876544  22121 11 1111     1244   467999 55568


Q ss_pred             eeEEEeeecCCHHHHHHHHH
Q psy13922        247 RGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       247 r~G~v~~~~~~~~~~~~l~~  266 (509)
                      |+|+++   .++++++.+..
T Consensus       263 ~ig~v~---~~~~i~~~~~~  279 (401)
T TIGR01885       263 PVSAVL---ADDDVMLTIKP  279 (401)
T ss_pred             CcEEEE---EcHHHHhhccC
Confidence            999998   78888887764

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PLN02509 cystathionine beta-lyase

Probab=99.79  E-value=1.3e-16  Score=167.08  Aligned_cols=223  Identities=14%  Similarity=0.141  Sum_probs=153.3

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHh
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAE  123 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~  123 (509)
                      .|+.. |.+ .++++++.+.+..|    .+++++++|+++++..++ .+.++||    +|+++.|.|.++...    +..
T Consensus       126 ~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il-~ll~~GD----~VI~~~~~y~~t~~ll~~~l~~  194 (464)
T PLN02509        126 DYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVT-HLIKNGE----EIVAGDDVYGGSDRLLSQVVPR  194 (464)
T ss_pred             ccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHH-HHhCCCC----EEEEcCCchhhHHHHHHHHHHH
Confidence            37655 533 57777777766543    456777788889997666 5788998    999999999987633    456


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      .|+++..++.       .|++.+++.+.+     ++++|++++|+||+|.+   .++++|+++|+++|+++|+|++|...
T Consensus       195 ~G~~v~~vd~-------~d~e~l~~ai~~-----~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~  259 (464)
T PLN02509        195 SGVVVKRVNT-------TNLDEVAAAIGP-----QTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSP  259 (464)
T ss_pred             CCeEEEEeCC-------CCHHHHHHhCCc-----CCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCcccc
Confidence            7999888753       268889888876     79999999999999997   56999999999999999999998653


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhccc-Ccchhhhhcc
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAML-CPTVLALVSL  282 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~  282 (509)
                      ...     .++     +.+     . .++++|++|.+.|..++-.|++++  .++.+...++..+.... ..+...    
T Consensus       260 ~~~-----~pl-----~~g-----a-Divv~S~tK~l~G~gdv~gG~v~~--~~~~l~~~~~~~~~~~g~~l~p~~----  317 (464)
T PLN02509        260 VLS-----RPL-----ELG-----A-DIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFD----  317 (464)
T ss_pred             ccC-----Chh-----hcC-----C-cEEEecCcccccCCCccceeEEEe--ccHHHHHHHHHHHHhcCCCcCHHH----
Confidence            321     111     111     1 355779999995434444676653  46666666554433211 111110    


Q ss_pred             ccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy13922        283 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS  362 (509)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  362 (509)
                                                   +..+               .+..+.+....++..+++..+.+.|++.|.++
T Consensus       318 -----------------------------A~l~---------------lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~  353 (464)
T PLN02509        318 -----------------------------CWLC---------------LRGIKTMALRIEKQQENARKIAMYLSSHPRVK  353 (464)
T ss_pred             -----------------------------HHHH---------------HhhhhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                                         1111               11222366777888888899999999887764

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=9.9e-17  Score=167.43  Aligned_cols=155  Identities=23%  Similarity=0.226  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh----cCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE----FNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~----~g~~~~~  130 (509)
                      ...|++.++++.+        .+..++++++++|+..++.++.++||    +|+++.+.|.+....+..    .|.++..
T Consensus        60 ~~~Le~~lA~l~g--------~~~~l~~ssG~~Ai~~al~al~~~Gd----~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~  127 (425)
T PRK06084         60 NDVLEQRVAALEG--------GVGALAVASGMAAITYAIQTIAEAGD----NIVSVAKLYGGTYNLLAHTLPRIGIETRF  127 (425)
T ss_pred             HHHHHHHHHHHhC--------CCceeEehhHHHHHHHHHHHHhCCCC----EEEEeCCCcchHHHHHHHhcccceeEEEE
Confidence            3678888888873        24567788888999999999999998    999999999865554432    4666665


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++.       .|++.+++++++     ++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|.....     
T Consensus       128 ~d~-------~d~e~le~ai~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-----  187 (425)
T PRK06084        128 AAH-------DDIAALEALIDE-----RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-----  187 (425)
T ss_pred             ECC-------CCHHHHHHHhcc-----CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-----
Confidence            542       389999999987     7999999999999999988   89999999999999999999975321     


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ..++ .    .+     . -++++|+||.+ |.+|.++|.+++
T Consensus       188 ~~p~-~----~g-----a-Divv~S~tK~l-~G~g~~~gG~v~  218 (425)
T PRK06084        188 CRPF-E----HG-----A-DIVVHSLTKYI-GGHGTSIGGIVV  218 (425)
T ss_pred             CChh-h----cC-----C-CEEEECchhcc-cccccceeEEEE
Confidence            1111 1    11     1 36678999999 458888888773

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.79  E-value=8.9e-17  Score=168.38  Aligned_cols=211  Identities=14%  Similarity=0.162  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEE-eCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVIL-SAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~-t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      +|.|.+++.+++..........+.     .+.+..+++.+.+....+-..+ .+++ +++++||++.+++..+.-..  +
T Consensus        57 ~p~v~~ai~~ql~~~~~~~~~~~~-----~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg--r  129 (425)
T PRK09264         57 NPVLKQALIDYLQRDGITHGLDMH-----TTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTG--R  129 (425)
T ss_pred             CHHHHHHHHHHHHhcccccccccC-----cHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcC--C
Confidence            689999999988862211111111     2344445554443211111112 4656 47999999999998865432  4


Q ss_pred             CeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCCCCC-CCHHHHHHHHHhhhcc-CCceEEEEeCCCC
Q psy13922        105 PGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESKQWG-LPISELERSITEARKH-CNPRAIVIINPGN  169 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~~~-~d~~~L~~~i~~~~~~-~~~~~ivi~~p~N  169 (509)
                      .+|+....+|++........ |-            .+..+|........ -|++.+++.+...... .++.+|++.....
T Consensus       130 ~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g  209 (425)
T PRK09264        130 TNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQG  209 (425)
T ss_pred             CeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccC
Confidence            57999999999876543322 10            12333322110000 2677888888653211 2567888865666


Q ss_pred             CCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ..|. ..+++++++|.++|++||+++|+||++.+|...|  .......  .++.+     ++   .++||.+ |..|+++
T Consensus       210 ~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG--~~~~~~~--~~v~P-----Di---~t~~K~l-~~~G~pi  276 (425)
T PRK09264        210 EGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG--TFFSFER--AGITP-----DI---VTLSKSI-SGYGLPM  276 (425)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc--HHHHHhh--cCCCC-----CE---EEecccc-CCCccce
Confidence            6776 6789999999999999999999999999876554  1212111  11222     23   3679999 5349999


Q ss_pred             EEEeeecCCHHH
Q psy13922        249 GYSEVINLDPGV  260 (509)
Q Consensus       249 G~v~~~~~~~~~  260 (509)
                      |+++   .++++
T Consensus       277 gav~---~~~~i  285 (425)
T PRK09264        277 ALVL---IKPEL  285 (425)
T ss_pred             EEEE---Echhh
Confidence            9998   56665

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.78  E-value=4.5e-17  Score=171.47  Aligned_cols=230  Identities=12%  Similarity=0.048  Sum_probs=136.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+.   .+  +.......+.+..+++.+.+..+.. ..+.+++++++++|++.+++..+.-..  ++.
T Consensus        74 ~p~v~~ai~~q~~~~---~~--~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tg--r~~  145 (443)
T PRK06058         74 APRVVEAVREQVARF---TH--TCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSALFNSGAEAVENAVKIARSYTG--RQA  145 (443)
T ss_pred             CHHHHHHHHHHHHhc---cC--ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCcHHHHHHHHHHHHHhhC--CCe
Confidence            689999999999872   21  1111122456666676665543211 124789999899999999996654321  348


Q ss_pred             EEEcCCCChhHHHHHHhcCC--------------EEEEEecCCCCC----CCCCH-HHHHHHH---HhhhccCCceEEEE
Q psy13922        107 VLIPIPQYPLYSASLAEFNM--------------EQIGYYLDESKQ----WGLPI-SELERSI---TEARKHCNPRAIVI  164 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~~~----~~~d~-~~L~~~i---~~~~~~~~~~~ivi  164 (509)
                      |+....+|+++...+.....              .+..+|.....+    +..+. +.+++.+   ++.....++.+|++
T Consensus       146 ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~  225 (443)
T PRK06058        146 VVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVII  225 (443)
T ss_pred             EEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEE
Confidence            99999999998755443211              112222110000    00110 1121211   11101125777776


Q ss_pred             eCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        165 INPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       165 ~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      ...+.-.|. ..+++.+++|.++|++||+++|.||++.+|...+.  ......  .++.++     ++   +++|.+ | 
T Consensus       226 EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~--~fa~~~--~gv~PD-----iv---~~gK~l-~-  291 (443)
T PRK06058        226 EPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA--WFACEH--EGIVPD-----LI---TTAKGI-A-  291 (443)
T ss_pred             CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh--hhHHHh--cCCCCC-----EE---EEcccc-c-
Confidence            433333455 45689999999999999999999999999876542  222111  122222     44   558999 5 


Q ss_pred             CCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        244 CGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                      +|+++|+++   .++++++.+..... .+.+.+.+++++
T Consensus       292 ~G~Pi~av~---~~~~i~~~~~~~~~~~T~~gnpl~~aa  327 (443)
T PRK06058        292 GGLPLSAVT---GRAEIMDAPHPGGLGGTYGGNPVACAA  327 (443)
T ss_pred             CCCccEEEE---EcHHHHhhccCCCCCCCCCCCHHHHHH
Confidence            899999998   78899888764432 344566663333

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.78  E-value=1.1e-17  Score=166.89  Aligned_cols=170  Identities=18%  Similarity=0.126  Sum_probs=130.9

Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEE
Q psy13922         51 DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIG  130 (509)
Q Consensus        51 ~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~  130 (509)
                      |..-..++++.+|++++       ..+.+++|+|+++++..++.+++++||    .|+++.|+|.+....+...|++++.
T Consensus        57 ~~g~i~~~~~~~A~~~g-------a~~~~~~~~Gst~a~~~~l~al~~~gd----~Vlv~~~~h~s~~~~~~~~g~~~~~  125 (294)
T cd00615          57 PTGPIKEAQELAARAFG-------AKHTFFLVNGTSSSNKAVILAVCGPGD----KILIDRNCHKSVINGLVLSGAVPVY  125 (294)
T ss_pred             CChHHHHHHHHHHHHhC-------CCCEEEEcCcHHHHHHHHHHHcCCCCC----EEEEeCCchHHHHHHHHHCCCEEEE
Confidence            34446788899998883       123455699999999999999999998    9999999999999999999999999


Q ss_pred             EecCCCCC----CCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc-cc
Q psy13922        131 YYLDESKQ----WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN-VY  205 (509)
Q Consensus       131 v~~~~~~~----~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~-~~  205 (509)
                      ++.+.+..    ..+|++.+++.+++.   ++++++++++| |++|.+++   +++|+++|+++|+++|+|++|... .+
T Consensus       126 v~~~~~~~~~~~~~i~~~~l~~~l~~~---~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~  198 (294)
T cd00615         126 LKPERNPYYGIAGGIPPETFKKALIEH---PDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRF  198 (294)
T ss_pred             ecCccCcccCcCCCCCHHHHHHHHHhC---CCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhcc
Confidence            87754433    368999999999752   26899999998 79999987   899999999999999999999753 33


Q ss_pred             cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+.. ..+...          ....+++.|++|++   +|++.|+++
T Consensus       199 ~~~~-~~~~~~----------~~~div~~S~hK~l---~g~~~~~~l  231 (294)
T cd00615         199 HPIL-PSSAAM----------AGADIVVQSTHKTL---PALTQGSMI  231 (294)
T ss_pred             Cccc-Ccchhh----------cCCcEEEEchhccc---chHhHHHHH
Confidence            3211 111111          11256678999986   677766654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.78  E-value=2.8e-16  Score=161.97  Aligned_cols=177  Identities=15%  Similarity=0.144  Sum_probs=126.1

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHH
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASL  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~  121 (509)
                      +.+|+.+. ...|++.++++.+        .+..+++++++.|+..++ .++++||    +|+++.|.|.+..    ..+
T Consensus        44 y~r~~~p~-~~~Le~~la~l~g--------~~~al~~~SG~~Al~~~l-~~l~pGd----~Vi~~~~~y~~t~~~~~~~~  109 (380)
T PRK06176         44 YSRSGNPT-RFALEELIADLEG--------GVKGFAFASGLAGIHAVF-SLFQSGD----HVLLGDDVYGGTFRLFDKVL  109 (380)
T ss_pred             ccCCCChh-HHHHHHHHHHHhC--------CCCEEEECCHHHHHHHHH-HHcCCCC----EEEEcCCChhHHHHHHHHHH
Confidence            44444333 4678888888873        223445555567898766 5678888    9999999987654    345


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ...|+++..++.       .|++.+++++++     ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|.
T Consensus       110 ~~~gi~v~~vd~-------~d~e~l~~ai~~-----~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a  174 (380)
T PRK06176        110 VKNGLSCTIIDT-------SDLSQIKKAIKP-----NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFA  174 (380)
T ss_pred             HhcCeEEEEcCC-------CCHHHHHHhcCc-----CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCcc
Confidence            667888887753       278999998876     7999999999999999987   8899999999999999999998


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .....     .++ .    .+     . -++++|++|.++|..+.-.|+++  +.++++.+++...+.
T Consensus       175 ~~~~~-----~p~-~----~g-----a-Divv~S~tK~l~g~~d~~gG~vv--~~~~~~~~~~~~~~~  224 (380)
T PRK06176        175 TPYYQ-----NPL-L----LG-----A-DIVVHSGTKYLGGHSDVVAGLVT--TNNEALAQEIAFFQN  224 (380)
T ss_pred             ccccC-----Ccc-c----cC-----C-CEEEecCceeccCCccceeeEEE--ecHHHHHHHHHHHHH
Confidence            64322     111 1    11     1 35577999999543334566665  256778777766554

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.78  E-value=5.2e-17  Score=163.60  Aligned_cols=339  Identities=16%  Similarity=0.153  Sum_probs=217.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++++++++   + .+ |+.+   .++.-.+|+.+.++.+   ..+.|-+++++|||...+++..+.-..  |+.
T Consensus        71 ~p~V~~Av~~~l~~---G-~~-fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSGTEAtmsAiRlARa~Tg--R~k  137 (432)
T COG0001          71 HPAVVEAVQEQLER---G-LS-FGAP---TELEVELAELLIERVP---SIEKVRFVNSGTEATMSAIRLARAYTG--RDK  137 (432)
T ss_pred             CHHHHHHHHHHHHh---c-CC-CCCC---CHHHHHHHHHHHHhcC---cccEEEEecchhHHHHHHHHHHHHhhC--CCe
Confidence            67899999999999   3 22 5443   2355556666655533   448999999999999999998876543  669


Q ss_pred             EEEcCCCChhHHHHHHh-cC--CEEEEEecCCC-------CCC---CCCHHHHHHHHHhhhccCCceEEEE-eCCCCCCC
Q psy13922        107 VLIPIPQYPLYSASLAE-FN--MEQIGYYLDES-------KQW---GLPISELERSITEARKHCNPRAIVI-INPGNPTG  172 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~-~g--~~~~~v~~~~~-------~~~---~~d~~~L~~~i~~~~~~~~~~~ivi-~~p~NPtG  172 (509)
                      |+...-||+++.+.+.. .|  ......|..+.       ...   --|++.+++++++..+  ++.+|++ +.+.|..=
T Consensus       138 IikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~--~IAaVIvEPv~gn~g~  215 (432)
T COG0001         138 IIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD--DIAAVIVEPVAGNMGV  215 (432)
T ss_pred             EEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCC--cEEEEEeccccCCCCC
Confidence            99999999997765543 22  11001010000       000   1289999999988533  6888888 46677644


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +...++.++.|.++|+++|+++|.||+...|...-+ .......+.||            +.++.|.. | .|+++|.+.
T Consensus       216 i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g-Gaq~~~gi~PD------------lttlGKiI-G-GGlP~ga~g  280 (432)
T COG0001         216 VPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG-GAQGYYGVEPD------------LTTLGKII-G-GGLPIGAFG  280 (432)
T ss_pred             CCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc-ccccccCcCcc------------hhhhhhhh-c-CCcceeeec
Confidence            577788999999999999999999999998876421 12333334443            55889999 6 999999997


Q ss_pred             eecCCHHHHHHHHHhhh----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        253 VINLDPGVKAMLHKSIS----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                         +..++++.+.....    ++.+.+.+++.|                              +.+.+..+..       
T Consensus       281 ---Gr~eiM~~~~p~g~vyqaGT~sgnplamaA------------------------------G~atl~~l~~-------  320 (432)
T COG0001         281 ---GRAEIMEQLAPLGPVYQAGTLSGNPLAMAA------------------------------GLATLEELMT-------  320 (432)
T ss_pred             ---cHHHHHhhhCCCCCccccCCCCCcHHHHHH------------------------------HHHHHHHHHh-------
Confidence               89999998865432    444555553333                              4444444422       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                              .+...+++.++.+.|.+.|+++   -++.+. ...++++-+.-.+.+..-.+.+.+.+......+.. .+.+
T Consensus       321 --------~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~-~~l~  391 (432)
T COG0001         321 --------EEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFH-HLLN  391 (432)
T ss_pred             --------cccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHH-HHHh
Confidence                    0113445555555555555542   155553 34555555432332222233333333333344445 5556


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      .||++.|+.+                                                    . .        +| +|.+
T Consensus       392 ~GV~l~ps~~----------------------------------------------------e-a--------~f-lS~a  409 (432)
T COG0001         392 RGVYLAPSQF----------------------------------------------------E-A--------GF-LSTA  409 (432)
T ss_pred             CCcccCCccc----------------------------------------------------c-c--------ee-eecc
Confidence            7999987541                                                    1 0        22 7888


Q ss_pred             cChHHHHHHHHHHHHHHHHHHh
Q psy13922        485 PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      +++++|+..++.+.+++++...
T Consensus       410 hte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         410 HTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             cCHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999887653

>PRK05939 hypothetical protein; Provisional

Probab=99.78  E-value=2.1e-16  Score=163.60  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH---HHHHhcCCEEEEEe
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS---ASLAEFNMEQIGYY  132 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~---~~~~~~g~~~~~v~  132 (509)
                      ..|++.++++.+        .+..+++++++.|+..++.++.++||    +|+++.+.|..+.   ..++..|++++.++
T Consensus        50 ~~lE~~la~leg--------~~~~v~~ssG~~Ai~~~l~all~~Gd----~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~  117 (397)
T PRK05939         50 AALEAKITKMEG--------GVGTVCFATGMAAIAAVFLTLLRAGD----HLVSSQFLFGNTNSLFGTLRGLGVEVTMVD  117 (397)
T ss_pred             HHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHcCCCC----EEEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence            478888888873        23345555568999999999999998    9999999987643   35667899999887


Q ss_pred             cCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccc
Q psy13922        133 LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFY  212 (509)
Q Consensus       133 ~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~  212 (509)
                      ..       |++.+++.+++     ++++|++++|+||||.+   .++++|+++|+++|+++|+|++|.....     +.
T Consensus       118 ~~-------d~e~l~~~l~~-----~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~-----~~  177 (397)
T PRK05939        118 AT-------DVQNVAAAIRP-----NTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWL-----FR  177 (397)
T ss_pred             CC-------CHHHHHHhCCC-----CCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccc-----cC
Confidence            42       78999999876     79999999999999998   4599999999999999999999864211     11


Q ss_pred             cHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        213 SFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       213 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +.     +.+      ..++++|+||.++ ..|.++|++++
T Consensus       178 ~~-----~~g------aDivv~S~sK~~~-g~g~~igg~v~  206 (397)
T PRK05939        178 PK-----DVG------ASLVINSLSKYIA-GHGNALGGAVT  206 (397)
T ss_pred             cc-----ccC------CEEEEecCeeccc-CCCCeEEEEEe
Confidence            10     011      1567889999995 58999999873

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.77  E-value=3.9e-16  Score=160.53  Aligned_cols=171  Identities=16%  Similarity=0.173  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HHHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SLAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~~v  131 (509)
                      .+.++++++.+....+   . +..++++++++|+..++.+++++||    +|+++.|.|.++..    .++..|+++..+
T Consensus        63 nPt~~~Le~~la~le~---~-~~~v~~sSG~aAi~~~l~all~~GD----~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~v  134 (395)
T PRK05967         63 TPTTDALCKAIDALEG---S-AGTILVPSGLAAVTVPFLGFLSPGD----HALIVDSVYYPTRHFCDTMLKRLGVEVEYY  134 (395)
T ss_pred             ChHHHHHHHHHHHHhC---C-CCEEEECcHHHHHHHHHHHhcCCCC----EEEEccCCcHHHHHHHHHHHHhcCeEEEEe
Confidence            4455555555543222   2 3345555578999999999999999    99999999999875    457789998887


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +..       +.+.+++++++     ++++|++++|+||++..   .++++|+++|+++|+++|+|++|....+.     
T Consensus       135 d~~-------~~e~l~~al~~-----~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~~-----  194 (395)
T PRK05967        135 DPE-------IGAGIAKLMRP-----NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLYF-----  194 (395)
T ss_pred             CCC-------CHHHHHHhcCc-----CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCceec-----
Confidence            532       35778888877     79999999999997655   67999999999999999999999764321     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhh
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                      .++.     .+.      -|+++|.+|.++|.+++-+|+++   .++++.+++....
T Consensus       195 ~pl~-----~Ga------Divv~S~tKy~~Gh~d~~~G~v~---~~~~~~~~l~~~~  237 (395)
T PRK05967        195 RPLD-----FGV------DISIHAATKYPSGHSDILLGTVS---ANEKCWPQLLEAH  237 (395)
T ss_pred             ChhH-----cCC------CEEEEecccccCCCCCeeEEEEE---cCHHHHHHHHHHH
Confidence            1211     111      36688999999888888899776   6777766665433

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.77  E-value=8.8e-16  Score=157.42  Aligned_cols=355  Identities=15%  Similarity=0.123  Sum_probs=226.6

Q ss_pred             HHHHHH-HhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEc
Q psy13922         32 QRAQAV-LDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIP  110 (509)
Q Consensus        32 ~a~~~~-l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~  110 (509)
                      .+|... +.....+.-. |..+....+|.++++++++        .++++.|++++.|+++++...+++||    .|  +
T Consensus        50 ~aMs~~q~a~~~~GDe~-yag~~s~~~lE~~va~~~G--------~~~av~v~sGT~Al~ll~~l~l~pGD----eV--p  114 (450)
T TIGR02618        50 NAMSDKQWAGLMMGDEA-YAGSRNFYHLERTVRELYG--------FKYVVPTHQGRGAENLLSQIAIKPGD----YV--P  114 (450)
T ss_pred             HHHHHHHHHHhhhcchh-hcCCCcHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHhCCCCcC----EE--C
Confidence            455444 4443323333 8888888999999999993        45799999999999988877788887    76  6


Q ss_pred             CCCChhHHHH-HHhcCCEEEEEecCC--------CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHHH
Q psy13922        111 IPQYPLYSAS-LAEFNMEQIGYYLDE--------SKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENI  180 (509)
Q Consensus       111 ~p~y~~~~~~-~~~~g~~~~~v~~~~--------~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~l  180 (509)
                      .++|...... +...|+.++.++.++        ..++.+|++.|++.|++... .++++|.+.+++|-. |.++|.+++
T Consensus       115 sn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~-~~~~lV~~e~t~N~~GG~pvs~~~l  193 (450)
T TIGR02618       115 GNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGA-DKIPYICLAVTVNLAGGQPVSMANM  193 (450)
T ss_pred             CceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC-cccCceEEEEecccCCCeeCCHHHH
Confidence            6777555554 788898777775541        23467899999999986311 245677788888855 899999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCc-ccc-----cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        181 QDIIKFAHREKLFLFADEVYQD-NVY-----AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      +++.++|++||+.||+|.+... ..+     .++....++.++..++...   .+.+ +.|..|.+ |.+-  .|+++  
T Consensus       194 ~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~---aD~~-~~S~~Kd~-~~~~--GG~l~--  264 (450)
T TIGR02618       194 REVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSY---ADGC-TMSGKKDC-LVNI--GGFLC--  264 (450)
T ss_pred             HHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhcc---CcEE-EEeeccCC-CCCC--ceEEE--
Confidence            9999999999999999998755 111     2222345676666665543   2354 55889987 4431  35554  


Q ss_pred             cCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        255 NLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                      +.++++.++++...-.+.+-.+.+..+..                            ...++...+.          +..
T Consensus       265 ~~d~~l~~k~r~~~~~~eG~~tyGgla~r----------------------------~~~ala~gL~----------e~~  306 (450)
T TIGR02618       265 MNDDEMFQSAKELVVVFEGMPSYGGLAGR----------------------------DMEAMAIGIR----------EAV  306 (450)
T ss_pred             eCCHHHHHHHHHHhhhcCCccccCchhhh----------------------------hHHHHHHHHH----------Hhh
Confidence            37999999998875433333333221210                            2233333221          111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCC--CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK--LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      +  +...+.-..+..+|.+.|.+. |+.+..|.++-.++++..  +|.     +.. ..-+..-++.++..+.||-..--
T Consensus       307 ~--~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph-----~~~-~~~p~~al~~~ly~~~gir~~e~  377 (450)
T TIGR02618       307 D--YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPH-----IPQ-DQFPAQSLAASIYVETGVRSMER  377 (450)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCC-----CCh-hhChHHHHHHHHHHHhCccEEee
Confidence            1  122233334567888999888 999887888888887764  111     000 11244555778888889865542


Q ss_pred             CCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHH
Q psy13922        413 AGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEK  489 (509)
Q Consensus       413 ~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~  489 (509)
                      ..+...                           ..                  +..+....+.--.+||.+-   -|.+.
T Consensus       378 g~~~~~---------------------------~~------------------~~~~~~~~~~~el~rlaiprr~yt~~h  412 (450)
T TIGR02618       378 GIVSAG---------------------------RN------------------NVTGEHHRPKLELVRLTIPRRVYTYAH  412 (450)
T ss_pred             cceecc---------------------------cC------------------CCCCcccCCccceeeeccccccccHhH
Confidence            222110                           00                  1111111222237999988   58888


Q ss_pred             HHHHHHHHHHHHHH
Q psy13922        490 LKAMLEKFREFHEE  503 (509)
Q Consensus       490 i~~~~~~l~~~~~~  503 (509)
                      ++-..++|..+.++
T Consensus       413 ~~~v~~~~~~~~~~  426 (450)
T TIGR02618       413 MDVVADGIIKLYKH  426 (450)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888888888765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.77  E-value=1.1e-18  Score=169.27  Aligned_cols=301  Identities=16%  Similarity=0.223  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcC--CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEe
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIED--VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY  132 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~--gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~  132 (509)
                      ++|.+.|.++... .|-.+..+ .|++++|+|+.++.++.+|...  ...+...|+...|.|..|........-....+.
T Consensus        46 ~eL~~~Ir~LH~~-VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~  124 (363)
T PF04864_consen   46 PELERQIRRLHRV-VGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA  124 (363)
T ss_dssp             HHHHHHHHHHHHH-H-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred             HHHHHHHHHHHHH-hccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence            6777777776643 35444444 7999999999999999999765  333455799999999999988766655555555


Q ss_pred             cCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccc
Q psy13922        133 LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFY  212 (509)
Q Consensus       133 ~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~  212 (509)
                      -+.. .|. +         ..  ...+=+=++++||||.|..     .+.++   +..+..+|.|-+|..-.|++-   +
T Consensus       125 Gda~-~~~-~---------~~--~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI---~  180 (363)
T PF04864_consen  125 GDAS-NFK-N---------SD--NPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPI---T  180 (363)
T ss_dssp             EECC-CGT-T----------S---CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS------
T ss_pred             ccHH-hhc-c---------CC--CCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeeccccccc---C
Confidence            4433 221 1         10  0012233468999999987     44444   456778899999988666532   1


Q ss_pred             cHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCC
Q psy13922        213 SFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRF  291 (509)
Q Consensus       213 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (509)
                      +.   .        +. -|.++|+||.- |.+|-|+||.++  .++++..+|..+.. .+.+++.=+++-...||+    
T Consensus       181 ~~---a--------D~-DiMLFT~SK~T-GHAGSR~GWAlV--KD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk----  241 (363)
T PF04864_consen  181 AP---A--------DH-DIMLFTLSKLT-GHAGSRFGWALV--KDEEVAKKMTKYMELNTIGVSRDSQLRALKILK----  241 (363)
T ss_dssp             S----B-----------SEEEEEHHHHC-S-GGG-EEEEEE--S-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHH----
T ss_pred             CC---C--------CC-ceEEEEEeccc-Cccccccceeee--cCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH----
Confidence            11   0        11 34466999999 999999999998  99999999988766 566777654433222221    


Q ss_pred             chhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-------
Q psy13922        292 PDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-------  364 (509)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-------  364 (509)
                               ++++++...               .+...+      .+--++.+++|...|.+.+..-..+.+.       
T Consensus       242 ---------~v~~~~~~~---------------~~~~~~------F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC  291 (363)
T PF04864_consen  242 ---------VVLDGYGTE---------------KGTEDI------FHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYC  291 (363)
T ss_dssp             ---------HHHHHCCHH---------------TTTTSH------HHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEE
T ss_pred             ---------HHHhcccCC---------------CCccch------HHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhc
Confidence                     111111100               000001      3334556677777777777653222221       


Q ss_pred             ------cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHH
Q psy13922        365 ------PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAI  438 (509)
Q Consensus       365 ------~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~  438 (509)
                            ...++.|+|++++.++             +++ +...|++.||..+.|..|+..                    
T Consensus       292 ~ff~~~~~psPafAWlkCe~ee-------------d~D-C~~~l~~~~I~tr~G~~fga~--------------------  337 (363)
T PF04864_consen  292 NFFKRVREPSPAFAWLKCEREE-------------DED-CYAVLREAKIITRSGVLFGAD--------------------  337 (363)
T ss_dssp             TTTTCEEE---SEEEEEESSCG-------------GSS-HHHHHHCTTEEEEEGGGGTS---------------------
T ss_pred             cccccccCCCCCeEEEecCCcc-------------ccc-HHHHHHhCCcccCCCCccCCC--------------------
Confidence                  2346789999997432             122 789999999999999999882                    


Q ss_pred             HHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHH
Q psy13922        439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                                                   ..        |+|||+-.++++++..++||..++
T Consensus       338 -----------------------------~r--------yVRlSml~~~d~Fd~l~~rL~~lv  363 (363)
T PF04864_consen  338 -----------------------------SR--------YVRLSMLKRDDDFDQLLERLSKLV  363 (363)
T ss_dssp             -----------------------------TT--------EEEEESSS-HHHHHHHHHHHHCCH
T ss_pred             -----------------------------CC--------eEEEeccCCHHHHHHHHHHHHhhC
Confidence                                         22        999999999999999999998653

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1368|consensus

Probab=99.77  E-value=2.1e-16  Score=149.11  Aligned_cols=293  Identities=17%  Similarity=0.160  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEE
Q psy13922         29 DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL  108 (509)
Q Consensus        29 ~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vl  108 (509)
                      +.++++.++...    ..- |+...-...|.+.+|+.++       ....+++++|++..+-.+...+.++|.    .||
T Consensus        37 eMr~am~eA~vg----DdV-yGeD~tt~rLE~~vA~l~G-------KEAgLFv~SGTmgNllaIm~Hc~~rg~----eii  100 (384)
T KOG1368|consen   37 EMRRAMAEASVG----DDV-YGEDPTTNRLEQRVAELFG-------KEAGLFVPSGTMGNLLAIMVHCHQRGS----EII  100 (384)
T ss_pred             HHHHHHhhcccC----ccc-ccCCccHHHHHHHHHHHhC-------ccceeeecccccccHHHHHHHhcCCCc----eEE
Confidence            444444444333    333 5554455899999999994       334688888888777777777777887    999


Q ss_pred             EcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh-c--cCCceEEEEeCCCCCCC-CCCCHHHHH
Q psy13922        109 IPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEAR-K--HCNPRAIVIINPGNPTG-QVLTKENIQ  181 (509)
Q Consensus       109 v~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~-~--~~~~~~ivi~~p~NPtG-~~~s~~~l~  181 (509)
                      +.+-+|.-..+   .....|+.+.++...++  ..+|++++++++.... +  .+.+++|.+.|-+|-+| .++|.|+++
T Consensus       101 ~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~d--gtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~  178 (384)
T KOG1368|consen  101 VGDRAHIHRYEQGGISQLAGVHVRTVKNEND--GTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELD  178 (384)
T ss_pred             eccchheeehhccChhhhccceeEeeeeCCC--CeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHH
Confidence            99887764332   34556788887765544  3789999999998543 2  26789999987766666 999999999


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      ++..||+++|+.+.+|-+-....--  ....++..+....       +.+.+ .+||.+ |   .++|-+++  ++.+++
T Consensus       179 ~v~~lak~~glkLH~DGARi~NAav--asgV~vk~i~~~f-------DSVsi-CLSKgl-g---APVGSViV--G~k~FI  242 (384)
T KOG1368|consen  179 RVKALAKRHGLKLHMDGARIFNAAV--ASGVPVKKICSAF-------DSVSI-CLSKGL-G---APVGSVIV--GSKDFI  242 (384)
T ss_pred             HHHHHHhccCCeeecchhhhhhHHH--HcCCCHHHHHHhh-------hhhhh-hhhccC-C---CCcccEEE--ccHHHH
Confidence            9999999999999999765432211  1234555554432       25666 889977 4   46899887  999999


Q ss_pred             HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        262 AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      ++.+.++                                |++.||++++-..+|.+.. +        .++    --...
T Consensus       243 ~kA~~~R--------------------------------KalGGGmRQsGvLaaaaLv-a--------l~~----~~~~L  277 (384)
T KOG1368|consen  243 DKARHFR--------------------------------KALGGGMRQSGVLAAAALV-A--------LDE----NVPLL  277 (384)
T ss_pred             HHHHHHH--------------------------------HHhcCchhHHHHHHHHHHH-H--------hhc----chHHH
Confidence            9887654                                4455555555444332211 1        011    11234


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeecc--CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        342 DSLKQRAKMVADTFNSIEGMSCNP--VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      +.-.++...+.+.++..+++++..  .+.++.. +.+..+          +++ .++ +...+++.||.+.+|.
T Consensus       278 ~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~-~~l~q~----------~~~-~~~-l~~~~~k~gi~lm~~~  338 (384)
T KOG1368|consen  278 RADHKRAKELAEYINTPEEIRVEVPAVETNIVN-MVLCQA----------RLT-AEE-LCKFLEKNGILLMGGA  338 (384)
T ss_pred             HHHHHHHHHHHHHhccccceeeecchhhcceee-eecccc----------cCC-HHH-HHHHHHHCCeEEeecc
Confidence            455566777788888776677653  3555443 333322          222 233 3566788999998644

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=1.9e-16  Score=164.46  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~  130 (509)
                      ...|.+.++++.+        .+..++++++++|+.+++.++.++||    +||++.++|.+....    +...|+++..
T Consensus        63 v~~lE~~la~leg--------~~~av~~~SG~aAi~~al~all~~GD----~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~  130 (432)
T PRK06702         63 LAAFEQKLAELEG--------GVGAVATASGQAAIMLAVLNICSSGD----HLLCSSTVYGGTFNLFGVSLRKLGIDVTF  130 (432)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhcCCCC----EEEECCCchHHHHHHHHHHHHHCCCEEEE
Confidence            3778888888873        34588899999999999999999998    999999999876665    6778999998


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      +..      .+|++.++++|++     ++++|++.+|+||++.+++   +++|+++|+++|+++|+|++|..-..     
T Consensus       131 vd~------~~d~~~l~~~I~~-----~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~-----  191 (432)
T PRK06702        131 FNP------NLTADEIVALAND-----KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL-----  191 (432)
T ss_pred             ECC------CCCHHHHHHhCCc-----CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh-----
Confidence            853      4589999999987     8999999999999999988   99999999999999999999852110     


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      ..+ ..    .+      --|+++|+||.++|..+
T Consensus       192 ~~p-l~----~G------ADIvv~S~TKy~~Ghsd  215 (432)
T PRK06702        192 CQA-FE----HG------ANIIVHSTTKYIDGHAS  215 (432)
T ss_pred             CCh-hh----cC------CCEEEEccccccCCCcc
Confidence            111 11    11      14778999995554333

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.76  E-value=1.2e-15  Score=160.06  Aligned_cols=198  Identities=14%  Similarity=0.159  Sum_probs=144.8

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-----
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-----   97 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----   97 (509)
                      .|.+++..++++.+.+.+   .+.. +++.  ..+++++++++++        .+++++++|+++++..++.+++     
T Consensus        39 ~~~~~~~~~~a~~~~~~~---~~~~-~G~~--~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~aL~al~~~~~~  104 (438)
T PRK15407         39 GKVIDAKELQNLVDASLD---FWLT-TGRF--NDAFEKKLAEFLG--------VRYALLVNSGSSANLLAFSALTSPKLG  104 (438)
T ss_pred             ccCCCHHHHHHHHHHHHh---Cccc-CChh--HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHhhcccc
Confidence            344555556666665655   3333 4433  3789999999983        2469999999999999998773     


Q ss_pred             ----cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         98 ----EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        98 ----~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                          ++||    .|+++.|+|..+...+...|++++.+++++. +|.+|++.+++.+..     ++++|+++++   +|.
T Consensus       105 ~~~~~pGd----~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~-~~~id~~~le~~i~~-----~tkaVi~~~~---~G~  171 (438)
T PRK15407        105 DRALKPGD----EVITVAAGFPTTVNPIIQNGLVPVFVDVELP-TYNIDASLLEAAVSP-----KTKAIMIAHT---LGN  171 (438)
T ss_pred             ccCCCCCC----EEEECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHcCc-----CCeEEEEeCC---CCC
Confidence                5666    9999999999999999999999999998753 578999999999876     7999998753   444


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEE
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYS  251 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v  251 (509)
                      .   .++++|.++|+++|++||+|++|+......+..   .-++    +       .+.+.||  +|.++  .|- .|++
T Consensus       172 p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~---~G~~----g-------d~~~fSf~~~k~~~--~ge-GG~l  231 (438)
T PRK15407        172 P---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRM---TGTF----G-------DIATLSFYPAHHIT--MGE-GGAV  231 (438)
T ss_pred             h---hhHHHHHHHHHHCCCEEEEECccchhhhcCCee---eecc----C-------ceEEEeCCCCCCcc--ccC-ceEE
Confidence            3   358999999999999999999998755332211   1111    0       1223455  47774  453 5888


Q ss_pred             eeecCCHHHHHHHHHhhh
Q psy13922        252 EVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~  269 (509)
                      ++  .++++.++++.++.
T Consensus       232 ~t--~d~~l~~~~~~~~~  247 (438)
T PRK15407        232 FT--NDPLLKKIIESFRD  247 (438)
T ss_pred             EE--CCHHHHHHHHHHHH
Confidence            64  88999888877665

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.76  E-value=1.2e-15  Score=156.45  Aligned_cols=231  Identities=13%  Similarity=0.105  Sum_probs=153.1

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      -+|.|++++.+++.+...- ...|..    .+...++++.|.+....+ ....+++++++++|++.+++.......  +.
T Consensus        73 ~hP~Vv~Av~~q~~~~~h~-~~~~~~----~e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tg--r~  144 (447)
T COG0160          73 NHPRVVEAVKRQLAKLNHT-HTRDLY----YEPYVELAEKLTALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTG--RP  144 (447)
T ss_pred             CCHHHHHHHHHHHHHhhcc-cCCccc----chhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhC--CC
Confidence            4799999999999984311 112322    245555555555432211 345799999999999999999865442  44


Q ss_pred             eEEEcCCCChhHHHHHHhc---------C-----CEEEEEecCCC--CCCCC--------CHHHHHHHHHhhhcc-CCce
Q psy13922        106 GVLIPIPQYPLYSASLAEF---------N-----MEQIGYYLDES--KQWGL--------PISELERSITEARKH-CNPR  160 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~---------g-----~~~~~v~~~~~--~~~~~--------d~~~L~~~i~~~~~~-~~~~  160 (509)
                      .||...-.|++.......+         |     ..+..+|....  ..|..        ..+.+++.+.....+ .++.
T Consensus       145 ~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vA  224 (447)
T COG0160         145 GVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVA  224 (447)
T ss_pred             cEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCcee
Confidence            8999999999865443222         1     11344443221  11221        234455544443222 4688


Q ss_pred             EEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        161 AIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       161 ~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +|++...+.-.|. +.|++.++++.++|++||+++|+||++.+|..+|  ++.++....  +.++     +|   ++||.
T Consensus       225 aiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG--~~fa~E~~g--v~PD-----iv---t~aK~  292 (447)
T COG0160         225 AIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG--KMFAFEHFG--VEPD-----IV---TLAKS  292 (447)
T ss_pred             EEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc--cchhhhhcC--CCCC-----EE---Eeccc
Confidence            8999888888886 7888999999999999999999999999999886  566665532  1222     44   67999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVS  281 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  281 (509)
                      + | .|+++|.++   ..+++++........+++.|..++++
T Consensus       293 i-g-~G~Pl~avv---~r~ei~~~~~g~~~~Tf~GNpva~Aa  329 (447)
T COG0160         293 L-G-GGLPLSAVV---GRAEIMDWPPGGHGGTFGGNPVACAA  329 (447)
T ss_pred             c-c-CCCceeEEe---ccHHhcccCCcccCCCCCcCHHHHHH
Confidence            9 6 699999998   79999884333333456666664444

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.75  E-value=1.5e-15  Score=155.63  Aligned_cols=169  Identities=18%  Similarity=0.228  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v  131 (509)
                      ..+.+.++++.+        .+.++++++|+.|+..++.+++++||    +|+++...|.+....++    ..|+++..+
T Consensus        58 ~~le~~la~Le~--------g~~a~~~~SGmaAi~~~l~~ll~~Gd----~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~  125 (386)
T PF01053_consen   58 RALEQRLAALEG--------GEDALLFSSGMAAISAALLALLKPGD----HIVASDDLYGGTYRLLEELLPRFGVEVTFV  125 (386)
T ss_dssp             HHHHHHHHHHHT---------SEEEEESSHHHHHHHHHHHHS-TTB----EEEEESSSSHHHHHHHHHCHHHTTSEEEEE
T ss_pred             HHHHHHHHHhhc--------ccceeeccchHHHHHHHHHhhcccCC----ceEecCCccCcchhhhhhhhcccCcEEEEe
Confidence            567777777762        46799999999999999999999999    99999999999876655    469998887


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC-cEEEEcccCCcccccCCCc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK-LFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~-i~lI~Deay~~~~~~~~~~  210 (509)
                      +.       -|++.+++++++     ++++|++..|.||+..+.+   +++|+++|+++| +++|+|..+.....-    
T Consensus       126 d~-------~d~~~l~~~l~~-----~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~----  186 (386)
T PF01053_consen  126 DP-------TDLEALEAALRP-----NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ----  186 (386)
T ss_dssp             ST-------TSHHHHHHHHCT-----TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC----
T ss_pred             Cc-------hhHHHHHhhccc-----cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee----
Confidence            53       279999999998     8999999999999988866   999999999998 999999999764221    


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC-HHHHHHHHHhhh
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD-PGVKAMLHKSIS  269 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~-~~~~~~l~~~~~  269 (509)
                       .++.     .+.      -|+++|.+|.++|...+=.|.+++  .+ +++.+.++....
T Consensus       187 -~pL~-----~Ga------Divv~S~TKyl~Ghsdv~~G~vv~--~~~~~~~~~l~~~~~  232 (386)
T PF01053_consen  187 -NPLE-----LGA------DIVVHSATKYLSGHSDVMGGAVVV--NGSSELYDRLREFRR  232 (386)
T ss_dssp             --GGG-----GT-------SEEEEETTTTTTTSSSE-EEEEEE--SSHHHHHHHHHHHHH
T ss_pred             -ccCc-----CCc------eEEEeeccccccCCcceeeEEEEE--Cchhhhhhhhcchhh
Confidence             1111     111      466889999998766666777763  44 688888876554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.75  E-value=3.8e-16  Score=163.77  Aligned_cols=214  Identities=13%  Similarity=0.128  Sum_probs=135.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+........|.     .+.+..+++.+.+...  -..+.++++++++||++.+++..+.-    +..
T Consensus        60 ~p~v~~ai~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~  132 (423)
T PRK05964         60 HPYIDQAIREQLDRLDHVIFAGFT-----HEPAERLAQRLVALTP--GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEP  132 (423)
T ss_pred             CHHHHHHHHHHHhhCCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            589999999999873211111122     2344455555544322  12358999999999999999987542    211


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCE-------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC-CC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNME-------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN-PG  168 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~-p~  168 (509)
                      .+.+|+...-+|++....+...+..             +..++.........+++.+++.+.+..  .++.+|++.. .+
T Consensus       133 ~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~--~~iaavi~Ep~i~  210 (423)
T PRK05964        133 GRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHA--GEIAAFIVEPLVQ  210 (423)
T ss_pred             CCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCC--CcEEEEEEecccc
Confidence            3558999999999876544332111             112222111000012777888886421  2577777764 57


Q ss_pred             CCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-C
Q psy13922        169 NPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-L  246 (509)
Q Consensus       169 NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-l  246 (509)
                      +.+|... +++++++|.++|++||+++|+||++.++...+  .......  .++.+     ++   .++||.+ | .| +
T Consensus       211 ~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G--~~~a~~~--~~v~p-----Di---~~~~K~l-~-gG~~  276 (423)
T PRK05964        211 GAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG--TLFACEQ--AGVSP-----DI---MCLSKGL-T-GGYL  276 (423)
T ss_pred             cCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc--chhHHHh--cCCCC-----Ce---eeeehhh-h-cCcc
Confidence            7788754 89999999999999999999999998876553  1211111  11222     13   3678999 4 55 8


Q ss_pred             eeEEEeeecCCHHHHHHHHH
Q psy13922        247 RGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       247 r~G~v~~~~~~~~~~~~l~~  266 (509)
                      ++|+++   .++++++.+..
T Consensus       277 p~~av~---~~~~i~~~~~~  293 (423)
T PRK05964        277 PLAATL---CTAEIFEAFYS  293 (423)
T ss_pred             cceEEE---EcHHHHHhhhc
Confidence            999987   79999988853

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.74  E-value=2.2e-15  Score=169.32  Aligned_cols=411  Identities=14%  Similarity=0.081  Sum_probs=231.0

Q ss_pred             HHHH-HHHHhhcCCCCCCC---CCCCH-HHHHHHHHHHhcccCCCcccCCC----CcchHHHHHHHHHHHhhhcCCCCCC
Q psy13922          6 SLSL-QVLALVSLPQLFDD---PRFPD-DVKQRAQAVLDGCRGQSVGSYTD----SPGIEIIRRHVAQYISRRDGQPADW   76 (509)
Q Consensus         6 ~~~~-~~~~~~~~~~~~~~---~~~p~-~v~~a~~~~l~~~~~~~~~~Y~~----~~g~~~lr~~va~~l~~~~g~~~~~   76 (509)
                      ..+| ..+.....--++++   ..+|+ .|.+++...+..........|..    ..-+.+.|+.++++++      .++
T Consensus        22 ~~~R~~~fp~l~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lg------a~~   95 (805)
T PLN02724         22 DELRATEFARLKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFN------APP   95 (805)
T ss_pred             HHHHHHHhhhcCCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhC------CCc
Confidence            3455 34544443334443   34455 45555555555422122222221    2235678888888884      334


Q ss_pred             C--cEEEeCCHHHHHHHHHHHh-hcCCCCCCCeEEEcCCCChhHH---HHHHhcCCEEEEEecCCC------CCCCCC--
Q psy13922         77 Q--DVILSAGASDGIKSVLKLL-IEDVDGKKPGVLIPIPQYPLYS---ASLAEFNMEQIGYYLDES------KQWGLP--  142 (509)
Q Consensus        77 ~--~i~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~------~~~~~d--  142 (509)
                      +  +|++|+|+|+++++++.++ .++||    .|+++.-.|.+..   ..++..|+++..++.+..      ....++  
T Consensus        96 ~~~~VvFtsnaT~alnlva~~l~~~~gd----~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~  171 (805)
T PLN02724         96 SDYACVFTSGATAALKLVGETFPWSSES----HFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVK  171 (805)
T ss_pred             cceEEEEeCChHHHHHHHHHHCCCCCCC----eEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccc
Confidence            4  5899999999999999998 56676    9999876666543   344566999999887621      111233  


Q ss_pred             HHHHHHHHHh----h-hccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-----CcEEEEcccCCcccccCCCccc
Q psy13922        143 ISELERSITE----A-RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE-----KLFLFADEVYQDNVYAEGSKFY  212 (509)
Q Consensus       143 ~~~L~~~i~~----~-~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~-----~i~lI~Deay~~~~~~~~~~~~  212 (509)
                      .+.|++.++.    . ....++++|.++..+|.||..+|.+.+.++.+.++.+     ++++++|.++..-.     ...
T Consensus       172 ~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~-----~pi  246 (805)
T PLN02724        172 SRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGT-----SPP  246 (805)
T ss_pred             hhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCC-----CCC
Confidence            2556665421    0 0012568999999999999999965443333333222     36899999987622     223


Q ss_pred             cHHHHHHHhCCCCCCceeEEEEecccccCC-CCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCC
Q psy13922        213 SFKKVLVEMGEPYKSMELASFMSCSKGYMG-ECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRF  291 (509)
Q Consensus       213 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G-~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (509)
                      .+..+.         .+++++ |+.|++ | ..|  +|+++   .++++.+.+.....+.+....    .    ..+..|
T Consensus       247 Dv~~~~---------~Dfl~~-S~HK~~-GgP~G--~G~L~---vr~~~~~~l~p~~~GGg~~~~----~----~~~~~~  302 (805)
T PLN02724        247 DLSRYP---------ADFVVV-SFYKIF-GYPTG--LGALL---VRRDAAKLLKKKYFGGGTVAA----S----IADIDF  302 (805)
T ss_pred             ChhhcC---------CCEEEE-ecceec-cCCCC--ceEEE---EehhhhhhhcCCccCCCceEE----E----ecccce
Confidence            443332         225655 999999 6 556  56665   366676666432221111100    0    001111


Q ss_pred             chhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCeecc
Q psy13922        292 PDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE------GMSCNP  365 (509)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------g~~~~~  365 (509)
                      .. ........++.|+.+..+..++..+++        |.... .++++.++..++.+++.+.|.+++      +++++.
T Consensus       303 ~~-~~~~~~~rfE~GT~n~~~i~~l~aal~--------~l~~i-g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg  372 (805)
T PLN02724        303 VK-RRERVEQRFEDGTISFLSIAALRHGFK--------LLNRL-TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYG  372 (805)
T ss_pred             ee-ccccHHHHhcCCCcchhHHHHHHHHHH--------HHHHh-ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcC
Confidence            00 001123457788888888777777754        22111 267788899999999999999885      477764


Q ss_pred             C---------CceeEEeecCCCCHHHHHHHhhcCCC---CcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhh
Q psy13922        366 V---------QGAMYAFPQMKLPAKAIAKAKAEGKC---PSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHY  433 (509)
Q Consensus       366 ~---------~~g~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~  433 (509)
                      +         .++++.| .+.            +.+   -....+..++.++||.++.|..|.......++.+    .+ 
T Consensus       373 ~~~~~~~~~~r~~ivsF-nv~------------~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~----~~-  434 (805)
T PLN02724        373 NHTFKLEFHIQGPIVTF-NLK------------RADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGL----SH-  434 (805)
T ss_pred             CCCCCCCcccccCEEEE-EEE------------cCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCC----CH-
Confidence            3         2445544 232            111   1122256778889999999988776211000000    00 


Q ss_pred             hHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHH
Q psy13922        434 TQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFH  501 (509)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~  501 (509)
                       +.+.+....++.|-+..+.+           .+     .+ ++.+|+||+  ++.+||+.+++.|++.+
T Consensus       435 -~~l~~~~~~~~~c~~~~~~~-----------~~-----~~-~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        435 -KDLQANFEAGHVCWDDQDVI-----------HG-----RP-TGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             -HHHHHHhhcCCccCchhhee-----------cC-----cc-cceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence             01111111122222222111           11     00 128999999  89999999999998865

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.73  E-value=1e-15  Score=149.88  Aligned_cols=208  Identities=13%  Similarity=0.129  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeE
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGV  107 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~V  107 (509)
                      |++++++.++-.   .+... |+...-...+.+.+++.+    |    .+.++|++++|++..+++.+.+++++    .|
T Consensus        14 ~~m~eam~~a~~---~~~~~-YG~D~~~~~~e~~~ae~~----g----~~a~~Fv~sGT~aN~lal~~~~~~~~----~v   77 (342)
T COG2008          14 PEMREALAAANA---VGDDV-YGEDPTTNALEQRIAELF----G----KEAALFVPSGTQANQLALAAHCQPGE----SV   77 (342)
T ss_pred             HHHHHHHHhccc---cCCCC-CCCCHHHHHHHHHHHHHh----C----CceEEEecCccHHHHHHHHHhcCCCC----eE
Confidence            555555544432   24444 888877777777777777    3    37899999999999999999999998    88


Q ss_pred             EEcCCCChhHHH--HHHhcC-CEEEEEecCCCCCCCCCHHHHHHHHHhhh-ccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        108 LIPIPQYPLYSA--SLAEFN-MEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       108 lv~~p~y~~~~~--~~~~~g-~~~~~v~~~~~~~~~~d~~~L~~~i~~~~-~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                      ++..-.|....+  .++..+ ...  ++..+..+..+++++++..+.... .+..+.++++.+.+|..|++||.+++++|
T Consensus        78 i~~~~aHi~~~E~Ga~~~~~~~~~--~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i  155 (342)
T COG2008          78 ICHETAHIYTDECGAPEFFGGGQK--LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAI  155 (342)
T ss_pred             EEeccccceecccCcHHHHcCCce--eccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHH
Confidence            888766654332  233332 222  233333344899999999988622 12455566665566688999999999999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      .++|+++|+.|..|-+=-....-.  ..++...+..       ..+++++ ++||..    |+.+|.+++  .+++++.+
T Consensus       156 ~~~~k~~~l~LHmDGAR~~nA~va--lg~~~~~~~~-------~~D~v~~-~~tK~g----~~~~gAiv~--gn~~~~~~  219 (342)
T COG2008         156 SAVCKEHGLPLHMDGARLANALVA--LGVALKTIKS-------YVDSVSF-CLTKGG----GAPVGAIVF--GNRDFAKR  219 (342)
T ss_pred             HHHHHHhCCceeechHHHHHHHHH--cCCCHHHHHh-------hCCEEEE-ecccCC----cceeeeEEE--cCHHHHHH
Confidence            999999999999996522111100  0133333322       3458877 889975    456788877  99999999


Q ss_pred             HHHhhh
Q psy13922        264 LHKSIS  269 (509)
Q Consensus       264 l~~~~~  269 (509)
                      ++..+-
T Consensus       220 a~~~rK  225 (342)
T COG2008         220 ARRWRK  225 (342)
T ss_pred             HHHHHH
Confidence            987655

>PRK06541 hypothetical protein; Provisional

Probab=99.73  E-value=1.5e-15  Score=160.10  Aligned_cols=215  Identities=14%  Similarity=0.108  Sum_probs=133.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+........|.     .+....+++.+.+...  -..+.+++++++++|++.+++..+..    |.+
T Consensus        70 ~p~v~~Av~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~  142 (460)
T PRK06541         70 RAELAEAAAKQAGTLAFFPLWSYA-----HPPAIELAERLAALAP--GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP  142 (460)
T ss_pred             CHHHHHHHHHHHhhCcCccccccC-----CHHHHHHHHHHHHhCC--CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            689999999999873211111122     2334445544443322  12358999999999999999887542    322


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCCC---CCCC--------HHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESKQ---WGLP--------ISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~---~~~d--------~~~L~~~i~~~~~~~~  158 (509)
                      .+..|+...-+|++....+... |.            .+..+|......   |.-+        ++.+++.++.... .+
T Consensus       143 ~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~  221 (460)
T PRK06541        143 GKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGP-DT  221 (460)
T ss_pred             CccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCC-CC
Confidence            3568999999999876543322 11            112222111000   1112        2566766653211 14


Q ss_pred             ceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +.+|++...++++|... +++.+++|.++|++||+++|+||++..|...+  .......  .++.++     ++   ++|
T Consensus       222 ~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G--~~~a~~~--~gv~PD-----iv---t~g  289 (460)
T PRK06541        222 VAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG--EMFGCER--FGYVPD-----II---TCA  289 (460)
T ss_pred             EEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc--hhhhhhh--cCCCCC-----EE---Eec
Confidence            55666655589999865 59999999999999999999999998875433  1112111  122221     33   679


Q ss_pred             cccCCCCCC-eeEEEeeecCCHHHHHHHHH
Q psy13922        238 KGYMGECGL-RGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       238 K~~~G~~Gl-r~G~v~~~~~~~~~~~~l~~  266 (509)
                      |.+ | .|+ ++|+++   .++++++.+..
T Consensus       290 K~l-~-~G~~pigav~---~~~~i~~~~~~  314 (460)
T PRK06541        290 KGI-T-SGYSPLGAMI---ASDRLFEPFLD  314 (460)
T ss_pred             ccc-c-CCccceeEEE---EcHHHHHHhhc
Confidence            999 5 887 999998   78888887753

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.73  E-value=3.3e-15  Score=156.04  Aligned_cols=294  Identities=15%  Similarity=0.122  Sum_probs=173.9

Q ss_pred             CCCCCCHHHHHHHHHHH-hcccCC-Cccc-CCCCcchHHHHH----HHHHHHhhhcCCCCCCCcE-EEeCCHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVL-DGCRGQ-SVGS-YTDSPGIEIIRR----HVAQYISRRDGQPADWQDV-ILSAGASDGIKSVL   93 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l-~~~~~~-~~~~-Y~~~~g~~~lr~----~va~~l~~~~g~~~~~~~i-~~t~G~~~al~~~~   93 (509)
                      .++.++|.+++++...+ .....+ ...+ |+......+|.+    .+++++    |    .+.. +++++|+.|+..++
T Consensus        36 sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g----~~~alv~~~SG~~A~~~~l  107 (416)
T PRK13034         36 SENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF----G----CDYANVQPHSGSQANGAVY  107 (416)
T ss_pred             cccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh----C----CCceEEecCCcHHHHHHHH
Confidence            66668999999998885 443211 1111 222233455666    666666    3    2345 45678889999999


Q ss_pred             HHhhcCCCCCCCeEEEcCCCChhH-HHHHHh--cCCEE--EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         94 KLLIEDVDGKKPGVLIPIPQYPLY-SASLAE--FNMEQ--IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        94 ~~l~~~gd~~~~~Vlv~~p~y~~~-~~~~~~--~g~~~--~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      .+++++||    .|+++..+|.+. ...++.  .+...  ..++++.. ++.+|++.+++.+...    ++++|++..+.
T Consensus       108 ~al~~~GD----~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~----~~klVi~~~~~  178 (416)
T PRK13034        108 LALLKPGD----TILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEH----KPKLIIAGFSA  178 (416)
T ss_pred             HHhcCCCC----EEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhc----CCeEEEECCCc
Confidence            99999999    999999988762 221111  12222  23333322 3568999999988653    67888876554


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      +  |...   ++.+|.++|+++|+++|+|++++...+..+....++           ... .++++|++|.++|   -..
T Consensus       179 ~--g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~-----------~~~-Di~~~s~~K~l~g---~~G  238 (416)
T PRK13034        179 Y--PREL---DFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF-----------PHA-HVVTTTTHKTLRG---PRG  238 (416)
T ss_pred             c--cccc---CHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC-----------CCc-eEEEEeCcccCCC---CCC
Confidence            3  4554   488888899999999999999877555322111111           012 3557799999842   235


Q ss_pred             EEEeeecCCHHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      |+++.  .++.+.+.++......  ........++                              ...++...++     
T Consensus       239 G~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~aa------------------------------~~~al~~~~~-----  281 (416)
T PRK13034        239 GMILT--NDEEIAKKINSAVFPGLQGGPLMHVIAA------------------------------KAVAFGEALQ-----  281 (416)
T ss_pred             eEEEE--CcHHHHHHHHhhcCCcccCCccHHHHHH------------------------------HHHHHHHHhC-----
Confidence            76652  5566666655432211  1111110000                              1111111111     


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc--CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP--VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                              ....+.++.+.++.+++.+.|.++ |+.+..  +++.. .++.+..+          +  .....+.+.|++
T Consensus       282 --------~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i-~~v~~~~~----------~--~~~~~~~~~L~~  339 (416)
T PRK13034        282 --------PEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHL-LLVDLRPK----------G--LSGKDAEQALER  339 (416)
T ss_pred             --------hhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcE-EEEEcCCC----------C--CCHHHHHHHHHh
Confidence                    113456788889999999999988 888764  33333 33334311          1  132335677888


Q ss_pred             cCeEEec
Q psy13922        405 TGICIVP  411 (509)
Q Consensus       405 ~gI~v~p  411 (509)
                      .||.+.+
T Consensus       340 ~GI~v~~  346 (416)
T PRK13034        340 AGITVNK  346 (416)
T ss_pred             CCcEEec
Confidence            9999875

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.73  E-value=2.8e-15  Score=157.78  Aligned_cols=225  Identities=13%  Similarity=0.088  Sum_probs=132.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcc--cCCCCcchHHHHHHHHHHHhhhcCCCCCCCc-EEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG--SYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~--~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      +|.|.+++.+++..   ....  .|-+    .+.+.++|+.|.+..+....... ++++++++||.+.+++..+.-..  
T Consensus        57 ~p~i~~ai~~q~~~---~~~~~~~~~~----~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tg--  127 (442)
T TIGR00709        57 HPNMKQKILDYLQS---GLPLHTLDLT----TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTG--  127 (442)
T ss_pred             CHHHHHHHHHHHHh---ccCccccccC----cHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcC--
Confidence            68999999999887   2211  1112    23455556555544321111124 45568999999999998765432  


Q ss_pred             CCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCC--CCC----CCHHH----HHHHHHhhhc-cCCc
Q psy13922        104 KPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESK--QWG----LPISE----LERSITEARK-HCNP  159 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~----~d~~~----L~~~i~~~~~-~~~~  159 (509)
                      |.+|+....+|++....+... |.            .+..++.....  .|.    .+.+.    +++.+..... ..++
T Consensus       128 r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  207 (442)
T TIGR00709       128 RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKP  207 (442)
T ss_pred             CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCce
Confidence            457999999999887555433 20            12222221110  000    01222    3333322111 1257


Q ss_pred             eEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~-~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      .+|++. .++|+....+|++++++|.++|++||+++|.||++.+|...+  .+.+...+  ++.++     ++   ++||
T Consensus       208 aavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG--~~~a~~~~--gv~PD-----iv---~~gK  275 (442)
T TIGR00709       208 AAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG--TMFAFEHA--GIEPD-----FV---VMSK  275 (442)
T ss_pred             EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC--chhHHHHc--CCCCc-----EE---EEcc
Confidence            777775 555555567899999999999999999999999999997764  33333332  22222     44   4699


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHh-hhcccCcchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKS-ISAMLCPTVLA  278 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~  278 (509)
                      .+ | .|+++|+++   .++++ +.+... ...+.+.+.++
T Consensus       276 ~l-~-~G~Pigav~---~~~~~-~~~~~~~~~~T~~gnpla  310 (442)
T TIGR00709       276 AV-G-GGLPLAVLL---IAPEF-DAWQPAGHTGTFRGNQLA  310 (442)
T ss_pred             cc-c-CCcccEEEE---EchHH-hccCCCcCCCCCCcCHHH
Confidence            99 5 599999998   56663 444221 12334455553

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.72  E-value=2.5e-15  Score=154.55  Aligned_cols=299  Identities=16%  Similarity=0.174  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-cCCCCCCCe
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-EDVDGKKPG  106 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~~~~~  106 (509)
                      ++.++++.+.+++   +++..+++  -..++.++++++++        .++++.++++|.||.+++.++- ++||    .
T Consensus         5 ~e~~~~v~~~l~s---~~~~~~g~--~~~~fE~~~a~~~g--------~~~~~~~~sgt~Al~~al~~l~~~~gd----e   67 (363)
T PF01041_consen    5 EEEIDAVLEVLRS---GWLSTYGP--YVEEFEKEFAEYFG--------VKYAVAVSSGTSALHLALRALGLGPGD----E   67 (363)
T ss_dssp             HHHHHHHHHHHHH---TCCSSSSH--HHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHTTGGTTS----E
T ss_pred             HHHHHHHHHHHHh---CCccCCCH--HHHHHHHHHHHHhC--------CCeEEEeCChhHHHHHHHHhcCCCcCc----e
Confidence            5678888888988   56654443  34789999999993        5689999999999999999984 6777    9


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+++..+|......+..+|++++.++++++ ++.+|++.+++.+++     ++++|++.+.   -|..   .++++|.++
T Consensus        68 Vi~p~~t~~~~~~ai~~~G~~pv~~Di~~~-~~~id~~~~~~~i~~-----~t~ai~~~h~---~G~~---~d~~~i~~~  135 (363)
T PF01041_consen   68 VIVPAYTFPATASAILWAGAEPVFVDIDPE-TLNIDPEALEKAITP-----KTKAILVVHL---FGNP---ADMDAIRAI  135 (363)
T ss_dssp             EEEESSS-THHHHHHHHTT-EEEEE-BETT-TSSB-HHHHHHHHHT-----TEEEEEEE-G---GGB------HHHHHHH
T ss_pred             EecCCCcchHHHHHHHHhccEEEEEeccCC-cCCcCHHHHHHHhcc-----CccEEEEecC---CCCc---ccHHHHHHH
Confidence            999999999999999999999999999966 689999999999998     7999997644   2333   359999999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                      |+++|++||+|.+++......+ ...         +.   .. .+.+.||  +|.++  .| ..|.+++  .++++.+++
T Consensus       136 ~~~~~i~lIeD~a~a~g~~~~g-~~~---------G~---~g-d~~~fSf~~~K~i~--~g-eGG~v~~--~~~~~~~~~  196 (363)
T PF01041_consen  136 ARKHGIPLIEDAAQAFGARYKG-RPV---------GS---FG-DIAIFSFHPTKIIT--TG-EGGAVVT--NDPELAERA  196 (363)
T ss_dssp             HHHTT-EEEEE-TTTTT-EETT-EET---------TS---SS-SEEEEESSTTSSS---SS-S-EEEEE--STHHHHHHH
T ss_pred             HHHcCCcEEEccccccCceeCC-Eec---------cC---CC-CceEecCCCCCCCc--CC-CCeeEEe--cHHHHHHHh
Confidence            9999999999999988654322 111         10   11 3445576  69884  45 4577754  899999999


Q ss_pred             HHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHH
Q psy13922        265 HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL  344 (509)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (509)
                      +.++.........     ........+          .++-.++.  .++++.             ....+++++..+.-
T Consensus       197 ~~~~~~g~~~~~~-----~~~~~~~~~----------g~n~rm~~--~~AAig-------------l~QL~~L~~~~~~R  246 (363)
T PF01041_consen  197 RALRNHGRSRDAF-----RRYRHELPP----------GYNFRMSE--LQAAIG-------------LAQLKRLDEIIARR  246 (363)
T ss_dssp             HHHTBTTEETSEC-----STTEESSSS------------B-B-BH--HHHHHH-------------HHHHHTHHHHHHHH
T ss_pred             hhhhccCcCcccc-----ccccccccC----------CcccccHH--HHHHHH-------------HHHHHHhhhhHHHH
Confidence            8876522111000     000000000          00000000  223322             12334478888888


Q ss_pred             HHHHHHHHHHHhcCCCCeecc--CCce--eEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        345 KQRAKMVADTFNSIEGMSCNP--VQGA--MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       345 ~~~~~~l~~~L~~~~g~~~~~--~~~g--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      +++...+.+.|.+++++...+  +...  .+..+.+.++..       ..  .+.+-+.+.|.+.||...+..
T Consensus       247 ~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~-------~~--~~rd~l~~~L~~~GI~~~~~~  310 (363)
T PF01041_consen  247 RENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDE-------AL--ADRDELVEALRARGIETRPHY  310 (363)
T ss_dssp             HHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCC-------GC--STHHHHHHHHHHTTBEEBCST
T ss_pred             HHHHHHHHHHHhcCCCccccccccccccccccccccccccc-------cc--chHHHHHHHHHHCCCcccccc
Confidence            889999999999998875432  2221  111122222210       00  123335677788899998744

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.72  E-value=1e-14  Score=146.83  Aligned_cols=345  Identities=15%  Similarity=0.166  Sum_probs=222.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |+-..|+.|+.++.+       ...++.++.-  .++.+.+.+.++..++.. ..+-++++++++.+++.++.++.++||
T Consensus        12 GP~~v~~~V~~am~~-------~~~~h~s~~F--~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgd   81 (383)
T COG0075          12 GPVPVPPRVLLAMAR-------PMVGHRSPDF--VGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGD   81 (383)
T ss_pred             CCCCCCHHHHHHhcC-------CCCCCCCHHH--HHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccCCCC
Confidence            444467777776632       2233344322  445555555555555522 234567778889999999999999999


Q ss_pred             CCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          +|++......+  +.+.++.+|+++..+......  .+|++.+++.+++.   ++.++|.+++.-.+||+..|   
T Consensus        82 ----kVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~--~v~p~~v~~~L~~~---~~~~~V~~vH~ETSTGvlnp---  149 (383)
T COG0075          82 ----KVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE--AVDPEEVEEALDKD---PDIKAVAVVHNETSTGVLNP---  149 (383)
T ss_pred             ----eEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC--CCCHHHHHHHHhcC---CCccEEEEEeccCcccccCc---
Confidence                98888776665  678899999999998776432  68999999999952   25788888988889999976   


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++||.++|+|.+-+...     ....+.+.         +.++++. +-=|.+++.||+  |.+.   .+++
T Consensus       150 l~~I~~~~k~~g~l~iVDaVsS~Gg-----~~~~vd~w---------giDv~it-gSQK~l~~PPGl--a~v~---~S~~  209 (383)
T COG0075         150 LKEIAKAAKEHGALLIVDAVSSLGG-----EPLKVDEW---------GIDVAIT-GSQKALGAPPGL--AFVA---VSER  209 (383)
T ss_pred             HHHHHHHHHHcCCEEEEEecccCCC-----cccchhhc---------CccEEEe-cCchhccCCCcc--ceeE---ECHH
Confidence            9999999999999999998876521     22233322         2336654 448999877874  6565   4777


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCC-CCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH-HH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDD-PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR-EK  337 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~-~~  337 (509)
                      -.+++......   +..+-.......+++ ..|+             .++......++..+++          ...+ -+
T Consensus       210 a~e~~~~~~~~---~~ylDL~~~~~~~~~~~~~p-------------~Tppv~~i~aL~~al~----------~i~~EGl  263 (383)
T COG0075         210 ALEAIEERKHP---SFYLDLKKWLKYMEKKGSTP-------------YTPPVNLIYALREALD----------LILEEGL  263 (383)
T ss_pred             HHHHHhcCCCC---ceeecHHHHHHHHhhcCCCC-------------CCCCHHHHHHHHHHHH----------HHHHhhH
Confidence            77766543221   000000000011111 0110             0111113344444432          2222 26


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCC---ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQ---GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG  414 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  414 (509)
                      +...++.+++.+++.+.++.+ |++.....   ......+  ..|.         |+.+.+. ...+++++|+.+.+|..
T Consensus       264 e~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~--~~P~---------g~~~~~~-~~~~~~~~g~~i~gg~~  330 (383)
T COG0075         264 EARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAI--KVPE---------GVDDKKV-RRALLKEYGVEIAGGQG  330 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEE--ECCC---------CCCcHHH-HHHHHHhCCEEeccccc
Confidence            888899999999999999999 88876522   2233332  2333         5553344 34788899999887653


Q ss_pred             CCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHH
Q psy13922        415 FGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKA  492 (509)
Q Consensus       415 f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~  492 (509)
                      ...                                                  .+        +|||+.-  .+++++..
T Consensus       331 ~l~--------------------------------------------------gk--------ifRIGhMG~~~~~dv~~  352 (383)
T COG0075         331 PLK--------------------------------------------------GK--------IFRIGHMGNVRPEDVLA  352 (383)
T ss_pred             ccC--------------------------------------------------cc--------EEEEecCccCCHHHHHH
Confidence            222                                                  12        8999977  78999999


Q ss_pred             HHHHHHHHHHHHH
Q psy13922        493 MLEKFREFHEEFL  505 (509)
Q Consensus       493 ~~~~l~~~~~~~~  505 (509)
                      ++..|..++.+..
T Consensus       353 ~l~ale~~L~~~g  365 (383)
T COG0075         353 ALAALEAALRELG  365 (383)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999987753

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=1.4e-14  Score=151.66  Aligned_cols=153  Identities=22%  Similarity=0.177  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~v  131 (509)
                      ..|++.++++.+        .+..++++++++|+.+++.++.++||    +|+++.+.|.+..    ..+...|++++.+
T Consensus        66 ~~le~~lA~l~g--------~~~al~~~SG~~Ai~~al~all~pGd----~VIv~~~~y~~t~~~~~~~~~~~G~~v~~v  133 (427)
T PRK05994         66 AVLEERVAALEG--------GTAALAVASGHAAQFLVFHTLLQPGD----EFIAARKLYGGSINQFGHAFKSFGWQVRWA  133 (427)
T ss_pred             HHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCC----EEEEecCcchhHHHHHHHHHHhcCcEEEEE
Confidence            668888888873        23578888889999999999999998    9999999998644    3466789999888


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +..       |++.+++.+++     ++++|++++|+||+|.+++   +++|+++|+++|+++|+|++|.....     .
T Consensus       134 d~~-------d~~~l~~ai~~-----~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~-----~  193 (427)
T PRK05994        134 DAD-------DPASFERAITP-----RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL-----I  193 (427)
T ss_pred             CCC-------CHHHHHHhcCc-----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence            642       78899998876     7999999999999999987   88999999999999999999974221     1


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .++     +.+     . -+++.|++|.++ -+|-.+|.++
T Consensus       194 ~pl-----~~g-----a-Divv~S~tK~lg-g~~~~~gG~v  222 (427)
T PRK05994        194 RPI-----EHG-----A-DIVVHSLTKFLG-GHGNSMGGII  222 (427)
T ss_pred             Ccc-----ccC-----C-cEEEEcCccccC-CCCCcEEEEE
Confidence            111     111     1 255679999994 4555566665

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.72  E-value=3.2e-14  Score=146.33  Aligned_cols=337  Identities=15%  Similarity=0.152  Sum_probs=215.5

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH-HHhcCCE
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS-LAEFNME  127 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~-~~~~g~~  127 (509)
                      |+.+....+|.++++++++        .+.++.|++++.|+++++...+++||    .|  +..+|...... +...|+.
T Consensus        74 Yagd~s~~~LE~~vAe~lG--------~e~aV~v~sGTaAl~ll~~l~v~pGd----~V--p~n~~f~Tt~ahI~~~Ga~  139 (460)
T PRK13237         74 YAGSRNFYHLEETVQEYYG--------FKHVVPTHQGRGAENLLSRIAIKPGQ----YV--PGNMYFTTTRYHQELNGGI  139 (460)
T ss_pred             hcCCCcHHHHHHHHHHHHC--------CCeEEEeCCHHHHHHHHHHhCCCCcC----EE--CCccchHhhHHHHHhCCcE
Confidence            8888888999999999993        45799999999999988776778887    64  55444444444 7778886


Q ss_pred             EEEEecC--------CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEcc
Q psy13922        128 QIGYYLD--------ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFLFADE  198 (509)
Q Consensus       128 ~~~v~~~--------~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~l~~l~~ia~~~~i~lI~De  198 (509)
                      .+-+..+        ...++.+|++.|++.|++... .++++|.+.+++|.. |...|.+++++|.++|++||+.||+|.
T Consensus       140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~-~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~Da  218 (460)
T PRK13237        140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA-ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDA  218 (460)
T ss_pred             EEeeecccccccccCCCCCCCcCHHHHHHHhccccC-CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence            5555322        123578999999999985311 256677777888888 799999999999999999999999999


Q ss_pred             cCCcccc------cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhccc
Q psy13922        199 VYQDNVY------AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAML  272 (509)
Q Consensus       199 ay~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~  272 (509)
                      +...-.-      .++....++.++..++...   .+.+++ |++|.+ +. +. .|++++  .++++.++++...-.+-
T Consensus       219 Ara~gna~fI~~re~~y~~~~i~ei~~e~~s~---aD~~t~-S~~K~~-~~-~~-GG~i~t--~D~eL~~~~r~~~~~~e  289 (460)
T PRK13237        219 TRCVENAYFIKEREEGYQDKSIKEIVHEMFSY---ADGCTM-SGKKDC-LV-NI-GGFLAM--NDEELFDEAKELVVVYE  289 (460)
T ss_pred             cchhcChhhhcccccccCCCcHhHHhhhccCc---CcEEEE-eCCCCC-CC-CC-ceEEEE--CCHHHHHHHHHhccccC
Confidence            8754210      1122334555555555443   335655 899998 33 33 577754  89999999988754332


Q ss_pred             CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy13922        273 CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVA  352 (509)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  352 (509)
                      +-.+.+..+..                            -..|++..+.          ++.+  ....+....+.++|.
T Consensus       290 G~~tygg~~gr----------------------------d~~alAvgl~----------E~~~--~~y~~~ri~~~~~l~  329 (460)
T PRK13237        290 GMPSYGGMAGR----------------------------DMEAMAIGIE----------ESVQ--YEYIEHRVGQVRYLG  329 (460)
T ss_pred             CCcCCCChhhh----------------------------HHHHHHhHHH----------hhch--HHHHHHHHHHHHHHH
Confidence            32232211100                            1223333222          1111  133334444567778


Q ss_pred             HHHhcCCCCeeccCCceeEEeecCC--CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec-CCC-CCCCCCccccccch
Q psy13922        353 DTFNSIEGMSCNPVQGAMYAFPQMK--LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP-GAG-FGQVPGTYHFRQQV  428 (509)
Q Consensus       353 ~~L~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p-g~~-f~~~~~~~~~r~~~  428 (509)
                      +.|.+. |+.+..|.||--++++..  +|.     +.. ..-+..-++.++..+.||-..- |+. ++-.          
T Consensus       330 ~~L~~~-Gvpv~~p~ggH~v~vda~~~lph-----~~~-~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~----------  392 (460)
T PRK13237        330 EKLLAA-GVPIVEPVGGHAVFLDARRFLPH-----LPQ-DQFPAQALAAELYIESGVRSMERGIVSAGRD----------  392 (460)
T ss_pred             HHHHHC-CCceecCCCceEEEEEhHHhCCC-----CCc-ccChHHHHHHHHHHHhCcCeEeecceecccC----------
Confidence            888877 999998998888887663  111     000 1124455677888888986553 221 1111          


Q ss_pred             hhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHHHHHHHHHHHHHHHH
Q psy13922        429 WWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~i~~~~~~l~~~~~~  503 (509)
                                                           +..+....+.--.+||.+-   -|.+.++-..++|..+.++
T Consensus       393 -------------------------------------~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        393 -------------------------------------PKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             -------------------------------------CCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence                                                 1111111122237999987   5888888888888888765

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.72  E-value=2.5e-15  Score=155.82  Aligned_cols=201  Identities=12%  Similarity=0.093  Sum_probs=135.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC---CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV---DGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g---d~~  103 (509)
                      +|.+.+++.+++...   ... +.  ....+....+++.+.+..    ..+.+++++++++|+..+++.++..+   .+.
T Consensus        54 ~p~v~~a~~~q~~~~---~~~-~~--~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~  123 (395)
T PRK03715         54 NPGMVEALAAQAEKL---INP-SP--AFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANEGAIKLARKWGRKHKNG  123 (395)
T ss_pred             CHHHHHHHHHHHHhc---ccc-cc--cccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence            588999999988762   211 11  122557778888886432    24689999999999999999886321   112


Q ss_pred             CCeEEEcCCCChhHHHHHHhc-CCEEEE---EecCCCCCC----CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC-
Q psy13922        104 KPGVLIPIPQYPLYSASLAEF-NMEQIG---YYLDESKQW----GLPISELERSITEARKHCNPRAIVIINPGNPTGQV-  174 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~~~----~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~-  174 (509)
                      +..|+.....|++........ |.....   .|..+  ++    ..|++.+++.+.+     ++++|++...++..|.. 
T Consensus       124 r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~l~~-----~~aavi~Epv~~~gG~~~  196 (395)
T PRK03715        124 AYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVP--GFPKAELNDIASVEKLITD-----KTVAVMLEPVQGEGGVIP  196 (395)
T ss_pred             CcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCC--CceeeCCchHHHHHHHcCC-----CceEEEEeCCcCCCCCcc
Confidence            347898999998875444333 322111   11111  11    2478888888865     68888888777777875 


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      .+++.+++|.++|++||+++|+||++.+|...|.  ......  .++.++        +.+++|.+ | .|+++|.++  
T Consensus       197 ~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~--~~a~~~--~gv~PD--------i~t~gK~l-g-~G~p~~av~--  260 (395)
T PRK03715        197 ATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT--LFAYEL--SGIEPD--------IMTLGKGI-G-GGVPLAALL--  260 (395)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc--hhhHhh--cCCCCc--------eeeehhhh-h-CCcceEEEE--
Confidence            4799999999999999999999999998755442  211111  122221        34779999 5 789999997  


Q ss_pred             cCCHHHH
Q psy13922        255 NLDPGVK  261 (509)
Q Consensus       255 ~~~~~~~  261 (509)
                       .++++.
T Consensus       261 -~~~~i~  266 (395)
T PRK03715        261 -AKAEVA  266 (395)
T ss_pred             -Eccccc
Confidence             576765

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.71  E-value=1.8e-15  Score=154.99  Aligned_cols=267  Identities=13%  Similarity=0.101  Sum_probs=163.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCC-------cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCC-HHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS-------PGIEIIRRHVAQYISRRDGQPADWQDVILSAG-ASDGIKSVL   93 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~-------~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G-~~~al~~~~   93 (509)
                      |+...|+.|++++.+.+.......-+.|...       .-..+.|+.+++++    +. -++++|++|+| +|++++.++
T Consensus         6 Gp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~----~~-~~~~~vvf~~gs~T~a~~~~~   80 (355)
T cd00611           6 GPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELL----NI-PDNYKVLFLQGGATGQFAAVP   80 (355)
T ss_pred             CCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CC-CCCceEEEEcCCchHHHHHHH
Confidence            5556799999999998855221112223333       23456777777777    32 14568999988 999999999


Q ss_pred             HHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCC-HHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         94 KLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP-ISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        94 ~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d-~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      ..+..+++ +.+.| +..+....+...++..|.++..++.++.+.|. + ++..+..+.+     ++++|.+++..|.||
T Consensus        81 ~~l~~~~~-~~~~i-~~g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~-----~~~lV~~~h~~t~tG  152 (355)
T cd00611          81 LNLLGDKG-TADYV-VTGAWSAKAAKEAKRYGGVVVIVAAKEEGKYT-KIPDVETWDLAP-----DAAYVHYCSNETIHG  152 (355)
T ss_pred             HhcCCCCC-eEEEE-ECCHHHHHHHHHHHhcCCCcEEEecccccCCC-CCCCHhhcCCCC-----CCCEEEEeCCccccc
Confidence            99987443 12234 33444444555778889999988876443331 2 2222223333     799999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ..++        .+++.+|+++++|.+.+....     ...+..+           ++ .+.|..|.+ |++|  +|.++
T Consensus       153 ~~~~--------~i~~~~g~~~~VDa~qs~g~~-----~idv~~~-----------~~-~~ss~~K~l-GP~G--~g~l~  204 (355)
T cd00611         153 VEFD--------EVPDTGGVPLVADMSSNILSR-----PIDVSKF-----------GV-IYAGAQKNL-GPAG--VTVVI  204 (355)
T ss_pred             EEcc--------eecccCCCeEEEEccccccCC-----CCCHHHh-----------CE-EEeeccccc-CCCc--eEEEE
Confidence            9743        244459999999999987332     2333332           13 345679999 8887  46665


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                         .++++.+++.....     +..         +   |.    ......-..++++..+..++.++++        |-.
T Consensus       205 ---~~~~~~~~~~~~~~-----~~~---------~---~~----~~~~~~~~~~Tpn~~~i~~L~aal~--------~l~  252 (355)
T cd00611         205 ---VRKDLLGKARKITP-----SML---------N---YK----THADNNSLYNTPPTFAIYMMGLVLK--------WLK  252 (355)
T ss_pred             ---ECHHHHhhcccCCC-----Ccc---------c---HH----HHHhcCCCCCCChHHHHHHHHHHHH--------HHH
Confidence               47777776543210     000         0   00    0000000012333335566666544        211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGM  361 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  361 (509)
                      ....++.+.++.+++.+++.+.|+++||+
T Consensus       253 ~~gg~e~i~~~~~~l~~~l~~~l~~~~gl  281 (355)
T cd00611         253 EQGGVEAMEKRNRQKAQLLYDTIDNSNGF  281 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            11027788899999999999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.71  E-value=3.6e-14  Score=147.90  Aligned_cols=357  Identities=12%  Similarity=0.041  Sum_probs=214.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE--eCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL--SAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~~~   99 (509)
                      ..|..| .+.+.+...+....+.+    .......++.+.+.+++.+.+|.+-..+++.+  |+|+||++.+++.+....
T Consensus        50 tt~~~p-~~~~~~~~~l~~~~~np----~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~  124 (431)
T TIGR01788        50 TTWMEP-EARKLMDETINKNMIDK----DEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWR  124 (431)
T ss_pred             CCCCCH-HHHHHHHHHHhcCCCCc----ccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHH
Confidence            344434 47788878876522222    11222346777777777777674311145554  899999999988765411


Q ss_pred             --------CC-CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922        100 --------VD-GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus       100 --------gd-~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                              +. ..+..|+++.-.|.++...++..|+++..+|.+++ ++.+|++.|++.+++     ++.+|+++..+|.
T Consensus       125 ~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~-~~~vd~~~L~~~i~~-----~t~lV~~t~g~t~  198 (431)
T TIGR01788       125 WRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPG-RYVIDPEQVVEAVDE-----NTIGVVCILGTTY  198 (431)
T ss_pred             HHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCC-ceeeCHHHHHHHHhh-----CCeEEEEEeCCCC
Confidence                    10 01237899999999999999999999999998863 357899999999987     7889889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHC------CcEEEEcccCCcccc--cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        171 TGQVLTKENIQDIIKFAHRE------KLFLFADEVYQDNVY--AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~------~i~lI~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      ||.+.|   +++|+++|+++      |+++++|.+|+.+..  .-+ +. .     .++.  ....+.+++ |.+|...|
T Consensus       199 tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~-~~-~-----~~~~--~~~~DSis~-s~HK~~~~  265 (431)
T TIGR01788       199 TGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP-DL-E-----WDFR--LPRVKSINV-SGHKYGLV  265 (431)
T ss_pred             CcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCC-Cc-h-----hhcC--CCCceEEEE-CchhccCC
Confidence            999977   89999999999      999999999996542  001 00 0     0111  113457777 88997534


Q ss_pred             CCCCeeEEEeeecCCHH-HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        243 ECGLRGGYSEVINLDPG-VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                      ..|  +|.+.+  .+++ +.+.+.. ...+.+....          +..            ++++.+   +..++...+.
T Consensus       266 P~g--~G~l~~--r~~~~l~~~~~~-~~~yl~~~~~----------~~t------------~~~sR~---g~~al~~w~~  315 (431)
T TIGR01788       266 YPG--VGWVIW--RDEEALPEELIF-HVNYLGGDEP----------TFT------------LNFSRP---ANQVIAQYYN  315 (431)
T ss_pred             CCC--cEEEEE--eChHHcchhhee-cccccCCCCC----------Ccc------------eecCch---HHHHHHHHHH
Confidence            555  566653  5543 2233211 0011111000          000            000000   0000000000


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF  399 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  399 (509)
                      -       ...-...++++.+...++.+++.+.|++.|+++++.+  ..+...| ++.-..       ..++ +..+ +.
T Consensus       316 l-------~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~F-r~~~~~-------~~~~-~~~~-l~  378 (431)
T TIGR01788       316 F-------LRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAF-KLKDDA-------DPGY-TLYD-LS  378 (431)
T ss_pred             H-------HHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEE-EeCCCC-------CCCc-CHHH-HH
Confidence            0       0000123677888888999999999999988988754  4444443 332100       0011 1223 45


Q ss_pred             HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeE
Q psy13922        400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHF  479 (509)
Q Consensus       400 ~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      +.|.+.|+.+..-.....                                                       ..|..++
T Consensus       379 ~~L~~~G~~~~~~~~p~~-------------------------------------------------------~~~~~~l  403 (431)
T TIGR01788       379 HRLRERGWIVPAYTLPKN-------------------------------------------------------AEDIVVM  403 (431)
T ss_pred             HHHHHCCCcccCCCCCCc-------------------------------------------------------cCCeEEE
Confidence            677788986542111110                                                       1233389


Q ss_pred             EEEee--cChHHHHHHHHHHHHHHHHH
Q psy13922        480 RTTIL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       480 Rls~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                      |+++.  .+.+.+++.++.|++++.++
T Consensus       404 R~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       404 RIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            99986  67889999999999888653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.71  E-value=1.6e-14  Score=148.48  Aligned_cols=167  Identities=13%  Similarity=0.159  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~~v  131 (509)
                      ..|.+.++++.        ..+..+++++++.|+..++.+++++||    +|+++...|.+....+    +..|+++..+
T Consensus        65 ~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD----~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v  132 (395)
T PRK08114         65 FSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGD----HVLMTGTAYEPTQDFCSKILSKLGVTTTWF  132 (395)
T ss_pred             HHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCC----EEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence            56777777765        246788888899999999999999998    9999999998776554    6679999887


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC--CcEEEEcccCCcccccCCC
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE--KLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~  209 (509)
                      +.       .|.+.++++++.     ++++|++.+|+||+|.+.+   +++|+++|+++  |+++|+|.++.....    
T Consensus       133 d~-------~d~~~l~~~l~~-----~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~----  193 (395)
T PRK08114        133 DP-------LIGADIAKLIQP-----NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL----  193 (395)
T ss_pred             CC-------CCHHHHHHhcCC-----CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc----
Confidence            63       267889999887     7999999999999999987   99999999998  499999999975221    


Q ss_pred             ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhh
Q psy13922        210 KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                        ..+..+    +.      -++++|.+|.++|.+.+-+|.++   .++++.+.+....
T Consensus       194 --~~pl~~----Ga------Divv~S~tKyl~Ghsdv~~G~v~---~~~~~~~~l~~~~  237 (395)
T PRK08114        194 --FKALDF----GI------DISIQAGTKYLVGHSDAMIGTAV---ANARCWEQLRENS  237 (395)
T ss_pred             --cCHHHc----CC------cEEEEcCcccccCCCcceeEEEE---cCHHHHHHHHHHH
Confidence              122222    11      35577999999787667888665   6777766665443

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.71  E-value=8.4e-15  Score=154.22  Aligned_cols=214  Identities=13%  Similarity=0.071  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC-CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK-KP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~-~~  105 (509)
                      +|.|.+++.+++....  ...+|-..    +.+..+++.+.+...  -..+.++++++++||+..+++..+.....+ +.
T Consensus       100 ~p~v~~Ai~~ql~~l~--~~~~~~~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~  171 (459)
T PRK11522        100 NPVVVSAVQNQLAKQP--LHSQELLD----PLRAMLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKF  171 (459)
T ss_pred             CHHHHHHHHHHHhhCc--ccccccCC----HHHHHHHHHHHHhCC--CCCCEEEEeCCchHHHHHHHHHHHHHhccCCCc
Confidence            6899999999998732  12223222    344445554443322  123589999999999999999876432111 34


Q ss_pred             eEEEcCCCChhHHHHHHhc-CCEEEE---EecCCCCC-C-CCCHHHHHHHHHhhhc-cCCceEEEEeCCCCCCCC-CCCH
Q psy13922        106 GVLIPIPQYPLYSASLAEF-NMEQIG---YYLDESKQ-W-GLPISELERSITEARK-HCNPRAIVIINPGNPTGQ-VLTK  177 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~~-~-~~d~~~L~~~i~~~~~-~~~~~~ivi~~p~NPtG~-~~s~  177 (509)
                      .|+.....|++........ +.....   .|..+.-. . ..|.+.+++.++.... ..++.+|++.....-.|. ..|+
T Consensus       172 ~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~  251 (459)
T PRK11522        172 TFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPE  251 (459)
T ss_pred             EEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCH
Confidence            7888899999876544332 211111   11111100 0 1267888888864211 125678888766666777 5678


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINL  256 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~  256 (509)
                      +.++++.++|++||+++|.||++..|...|.  ......  .++.++     ++   +++|.+ | .| +++|.++   .
T Consensus       252 ~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~--~~a~e~--~gv~PD-----iv---t~gK~l-g-gG~~Pigav~---~  314 (459)
T PRK11522        252 GYLTAVRKLCDEFGALLILDEVQTGMGRTGK--MFACEH--ENVQPD-----IL---CLAKAL-G-GGVMPIGATI---A  314 (459)
T ss_pred             HHHHHHHHHHHHcCCEEEeccceecCCccch--hhhhhc--cCCCCC-----EE---Eechhh-h-CCCccceeEE---E
Confidence            8999999999999999999999988755432  212111  122222     33   779999 5 78 6999998   6


Q ss_pred             CHHHHHHHH
Q psy13922        257 DPGVKAMLH  265 (509)
Q Consensus       257 ~~~~~~~l~  265 (509)
                      .+++++.+.
T Consensus       315 ~~~i~~~~~  323 (459)
T PRK11522        315 TEEVFSVLF  323 (459)
T ss_pred             cHHHHHHhc
Confidence            788888764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.71  E-value=1.2e-14  Score=151.98  Aligned_cols=154  Identities=19%  Similarity=0.213  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~~  130 (509)
                      ..++++.+|++++        .+..++|+++++|+++++.++.++||    +|+++...|.+....+    ...|++++.
T Consensus        66 ~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll~~Gd----~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~  133 (433)
T PRK08134         66 VAVLEERVAALEG--------GVGAIATASGQAALHLAIATLMGAGS----HIVASSALYGGSHNLLHYTLRRFGIETTF  133 (433)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCccHHHHHHHHHHHhhCCeEEEE
Confidence            4778889998873        23478899999999999999998988    9999999998765443    557999998


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++.+       |++++++++++     ++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|.++.....     
T Consensus       134 vd~~-------d~~~l~~~i~~-----~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~-----  193 (433)
T PRK08134        134 VKPG-------DIDGWRAAIRP-----NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL-----  193 (433)
T ss_pred             ECCC-------CHHHHHHhcCC-----CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc-----
Confidence            8753       78999999987     8999999999999999988   89999999999999999999865321     


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ..++ .    .+     . -++++|.+|.+ |-+|-.+|.++
T Consensus       194 ~~pl-~----~G-----a-D~vv~S~tK~l-~g~g~~~gG~v  223 (433)
T PRK08134        194 LRPF-E----HG-----A-DLVYHSATKFL-GGHGTAIGGVL  223 (433)
T ss_pred             CCch-h----cC-----C-CEEEecccccc-CCCCCceEEEE
Confidence            1121 1    11     1 24466999999 45777677765

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.70  E-value=4.2e-15  Score=156.33  Aligned_cols=214  Identities=13%  Similarity=0.091  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+....... +..    .+...++++.+.+..... ..+.|++++++++|+..+++..+.-..  +..
T Consensus        60 ~p~v~~Ai~~ql~~~~~~~~~-~~~----~~~~~~lae~L~~~~p~~-~~~~v~f~~SGseA~e~AiklAr~~tg--r~~  131 (445)
T PRK08593         60 PPRVVEAIKAQADKFIHYTPA-YMY----HEPLVRLAKKLCELAPGD-FEKRVTFGLSGSDANDGIIKFARAYTG--RPY  131 (445)
T ss_pred             CHHHHHHHHHHHHhccCcccc-ccC----CHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHhhC--CCe
Confidence            689999999999872211111 112    233444454444332211 125899999999999999998654322  347


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCC--CCC-CC-------HHHHHHHHHhhhccCCceEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESK--QWG-LP-------ISELERSITEARKHCNPRAI  162 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~--~~~-~d-------~~~L~~~i~~~~~~~~~~~i  162 (509)
                      |+...-.|++....+... +.             .+..+|..+..  .+. .+       ++.+++.+.......++.+|
T Consensus       132 ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAav  211 (445)
T PRK08593        132 IISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACI  211 (445)
T ss_pred             EEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence            888898999875443221 10             12223322110  000 11       13344444321111268888


Q ss_pred             EEeCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      ++....+..|.. .+++.+++|.++|++||+++|.||++..|...+.  ......+  .+.++        +.+++|.+ 
T Consensus       212 I~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~--~~a~~~~--gv~pD--------i~t~gK~l-  278 (445)
T PRK08593        212 VIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK--WSSISHF--NITPD--------LMSFGKSL-  278 (445)
T ss_pred             EEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch--HHHHHhc--CCCCC--------Eeeecccc-
Confidence            887777777875 7899999999999999999999999998865431  2111111  22221        33779999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      | .|+++|+++   .++++++.+.
T Consensus       279 ~-~G~p~gav~---~~~~i~~~~~  298 (445)
T PRK08593        279 A-GGMPMSAIV---GRKEIMESLE  298 (445)
T ss_pred             c-CCcccEEEE---EcHHHHhhhc
Confidence            5 789999998   7899988875

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.70  E-value=5.5e-14  Score=146.02  Aligned_cols=191  Identities=12%  Similarity=0.084  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHH-HHHHHHHHHhhc---CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGAS-DGIKSVLKLLIE---DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~---~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~  130 (509)
                      ...+.+.+.+.+.+..|.+ ..+..++++|+| .++.+++.++..   +++    .|+++.-+|.+...++...|++++.
T Consensus       103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd----~VI~p~~th~S~~kAi~~~G~~pv~  177 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAK----YVIWPRIDQKSCIKAISTAGFEPRV  177 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCC----EEEEECcChHHHHHHHHHcCCeEEE
Confidence            4556666666665555633 124688888888 588777777653   355    9999999999999999999999999


Q ss_pred             Eec-CCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCC
Q psy13922        131 YYL-DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       131 v~~-~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~  209 (509)
                      ++. .++.+|.+|++.|+++|++..  ++..++++++|+  |+.....+++++|+++|++||+++|+|++|+....    
T Consensus       178 Vd~~~d~~~~~iD~e~Le~aIt~~~--~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~----  249 (444)
T TIGR03531       178 IETVLDGDELTTDVEDIERAIEEIG--PDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN----  249 (444)
T ss_pred             eeeeecCcCCCcCHHHHHHHHHhcc--CCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh----
Confidence            995 234578999999999998521  134566666665  55555568899999999999999999999985221    


Q ss_pred             ccccHHHHHH-HhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhh
Q psy13922        210 KFYSFKKVLV-EMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       210 ~~~~~~~~~~-~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                         ....+.. ....  ....++ +.|++|.+ .+||.  |+++ ++.++++++.+....
T Consensus       250 ---~~~~~~~~g~~~--Grad~v-v~s~hK~l-~~pg~--Gg~I-~~~d~el~~~i~~~y  299 (444)
T TIGR03531       250 ---KYMELINKAIKV--GRVDAV-VSSTDKNF-MVPVG--GAII-YSFDENFIQEISKSY  299 (444)
T ss_pred             ---hhhhhhhccccc--cCCCeE-EEeCccCC-CCCCC--EEEE-EECCHHHHHHHHHhc
Confidence               1111110 0000  011244 55999999 47776  4443 237899998887643

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.70  E-value=2.1e-14  Score=150.06  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v  131 (509)
                      ..|++.++++++        .+..+++++++.|+..++.++.++||    +|+++...|.+....    +...|++++.+
T Consensus        72 ~~Le~~lA~l~g--------~~~av~~sSG~aAi~~al~all~~Gd----~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~v  139 (436)
T PRK07812         72 DVVEQRIAALEG--------GVAALLLASGQAAETFAILNLAGAGD----HIVSSPRLYGGTYNLFHYTLPKLGIEVSFV  139 (436)
T ss_pred             HHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCC----EEEEeCCcchHHHHHHHHHhhcCeEEEEEE
Confidence            577888887763        34578888888999999999999998    999999888876543    44578888887


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      + +.     .|++.+++++++     ++++|++.+|+||+|.+.+   +++|.++|+++|+++|+|+++.....     .
T Consensus       140 d-d~-----~d~e~l~~ai~~-----~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~-----~  200 (436)
T PRK07812        140 E-DP-----DDLDAWRAAVRP-----NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL-----I  200 (436)
T ss_pred             C-CC-----CCHHHHHHhCCC-----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            5 22     288999988876     7999999999999999988   89999999999999999998864211     1


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      .++ .    .     +.+++ +.|++|.++ -.|--+|++++
T Consensus       201 ~pl-~----~-----GaDiv-v~S~tK~lg-g~G~~i~G~vv  230 (436)
T PRK07812        201 RPL-E----H-----GADIV-VHSATKYLG-GHGTAIAGVIV  230 (436)
T ss_pred             Cch-h----c-----CCCEE-EEecccccC-CCCCeEEEEEE
Confidence            111 1    1     12244 579999994 45655666663

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.70  E-value=1.1e-14  Score=153.96  Aligned_cols=332  Identities=13%  Similarity=0.093  Sum_probs=200.1

Q ss_pred             CCCCCCHHHHHHHHHHHhccc--CCCccc-CCCCcchHH----HHHHHHHHHhhhcCCCCCCCcEEEe---CCHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCR--GQSVGS-YTDSPGIEI----IRRHVAQYISRRDGQPADWQDVILS---AGASDGIKS   91 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~--~~~~~~-Y~~~~g~~~----lr~~va~~l~~~~g~~~~~~~i~~t---~G~~~al~~   91 (509)
                      ..+.+++.+++++...+...-  +..... |........    .|+.+++++    |  .+++++.++   +|++++...
T Consensus        42 sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf----~--a~~~~~~~~~~~~sgt~an~~  115 (452)
T PTZ00094         42 SENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF----G--LDPEEWGVNVQPYSGSPANFA  115 (452)
T ss_pred             ccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh----C--CCcccceeecCCCchHHHHHH
Confidence            677789999999988887521  111112 222221222    344566666    4  456677676   788999999


Q ss_pred             HHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh----------cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceE
Q psy13922         92 VLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE----------FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRA  161 (509)
Q Consensus        92 ~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~----------~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~  161 (509)
                      ++.++.++||    +|++....|.++......          .+.++..++.+.+  ..+|++.|++.++..    ++++
T Consensus       116 v~~al~~~gd----~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~~L~~~l~~~----~~~l  185 (452)
T PTZ00094        116 VYTALLQPHD----RIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYDKLEELAKAF----RPKL  185 (452)
T ss_pred             HHHHhcCCCC----EEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHHHHHHHHHHh----CCCE
Confidence            9999998888    999987777665433211          1234445555543  478999999999764    6777


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       162 ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +++.  ++.+|...+   +++|.++|+++|+++++|++++......+....++.           +.+++ +.|.+|++.
T Consensus       186 vi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-----------~~D~l-~~S~hK~l~  248 (452)
T PTZ00094        186 IIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-----------YADVV-TTTTHKSLR  248 (452)
T ss_pred             EEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-----------CCcEE-EcCCccCCC
Confidence            7664  334888887   888888999999999999999875543221111110           12344 569999873


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhhccc------CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSISAML------CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      |   -+.|++.+   ++++.+.+........      +++..                                  ..++
T Consensus       249 G---P~Gg~l~~---~~~~~~~l~~~~~~~~~p~~~G~~~~~----------------------------------~iaa  288 (452)
T PTZ00094        249 G---PRSGLIFY---RKKVKPDIENKINEAVFPGLQGGPHNH----------------------------------QIAA  288 (452)
T ss_pred             C---CCceEEEE---ecccchHHHHhhccccCCCCCCCchHH----------------------------------HHHH
Confidence            3   33477663   4444443332111000      11111                                  2333


Q ss_pred             hhcccCCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc-eeEEeecCCCCHHHHHHHhhcCCCC
Q psy13922        316 MDCVVNPPQPGEPSYEQF-SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG-AMYAFPQMKLPAKAIAKAKAEGKCP  393 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~g~~~  393 (509)
                      +..+++          .. ....+...+.+.++.+++.+.|.+. |+.+..+.. .-...+.+..+          ++. 
T Consensus       289 l~~al~----------~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~----------~~~-  346 (452)
T PTZ00094        289 IAVQLK----------EVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPF----------GIT-  346 (452)
T ss_pred             HHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcC----------CCC-
Confidence            333322          11 1124567788889999999999886 877653211 22234344321          221 


Q ss_pred             cHHHHHHHHhhcCeEE-ecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCC
Q psy13922        394 SVLYAFELLERTGICI-VPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQ  472 (509)
Q Consensus       394 ~~~~~~~ll~~~gI~v-~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (509)
                      .. .+...|+++||.+ +++..+...                               .+             .++     
T Consensus       347 ~~-~~~~~L~~~gI~vs~~~~p~~~~-------------------------------~~-------------~~~-----  376 (452)
T PTZ00094        347 GS-KMEKLLDAVNISVNKNTIPGDKS-------------------------------AL-------------NPS-----  376 (452)
T ss_pred             HH-HHHHHHHHCCcEEecccCCCCCc-------------------------------CC-------------CCC-----
Confidence            22 2567788899999 444433220                               00             012     


Q ss_pred             CCCceeEEEEee--c----ChHHHHHHHHHHHHHHHH
Q psy13922        473 VPGTYHFRTTIL--P----QPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       473 ~~~~~~~Rls~~--~----~~~~i~~~~~~l~~~~~~  503 (509)
                           .+|+|+.  +    ++++++..++.|.+++..
T Consensus       377 -----~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~  408 (452)
T PTZ00094        377 -----GVRLGTPALTTRGAKEKDFKFVADFLDRAVKL  408 (452)
T ss_pred             -----eEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                 7999985  3    489999999999988874

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.69  E-value=2.1e-14  Score=150.29  Aligned_cols=214  Identities=13%  Similarity=0.079  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC-CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD-GKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd-~~~~  105 (509)
                      +|.|.+++.+++....  ...+|-...    .+..+|+.+.+....  ..+.++++++++||++.+++..+.... ..+.
T Consensus        93 hp~v~~Av~~ql~~l~--~~~~~~~~~----~~~~lAe~L~~~~p~--~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~  164 (442)
T TIGR03372        93 NPNVIAAVENQLAKQP--LHSQELLDP----LRALLAKTLAALTPG--KLKYSFFCNSGTESVEAALKLAKAYQSPRGKF  164 (442)
T ss_pred             CHHHHHHHHHHHHhCC--CcccccCCH----HHHHHHHHHHHhCCC--CcCEEEEeCCchHHHHHHHHHHHHHHhhcCCc
Confidence            6889999999998732  222233333    334444444333221  125799999999999999998765310 0134


Q ss_pred             eEEEcCCCChhHHHHHHhcCCE-EE---EEecCCCCC--CCCCHHHHHHHHHhhhc-cCCceEEEEeCCCCCCCC-CCCH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNME-QI---GYYLDESKQ--WGLPISELERSITEARK-HCNPRAIVIINPGNPTGQ-VLTK  177 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~-~~---~v~~~~~~~--~~~d~~~L~~~i~~~~~-~~~~~~ivi~~p~NPtG~-~~s~  177 (509)
                      .|+.....|++........... ..   ..|..+.-.  -..|.+.+++.++.... ..++.+|++.......|. ..++
T Consensus       165 ~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~  244 (442)
T TIGR03372       165 TFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPE  244 (442)
T ss_pred             EEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCH
Confidence            7999999999876544433211 00   011111000  01267788777754211 126788888766666776 5578


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINL  256 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~  256 (509)
                      +.++++.++|++||+++|.||++..|...|  ........  ++.++     ++   +++|.+ | .| +++|.++   .
T Consensus       245 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG--~~~a~e~~--gv~PD-----iv---t~gK~l-g-~G~~Pigavv---~  307 (442)
T TIGR03372       245 GYLPAVRALCDEFGALLILDEVQTGMGRTG--KMFACEHE--GVQPD-----IL---CLAKAL-G-GGVMPIGATI---A  307 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEeecccCCCccc--cchhhhhc--CCCCC-----ee---eehhhh-c-CCcccceEEE---e
Confidence            999999999999999999999998876554  22222221  22222     33   579999 5 78 6999988   6


Q ss_pred             CHHHHHHHH
Q psy13922        257 DPGVKAMLH  265 (509)
Q Consensus       257 ~~~~~~~l~  265 (509)
                      ++++.+.+.
T Consensus       308 ~~~i~~~~~  316 (442)
T TIGR03372       308 TEAVFSVLF  316 (442)
T ss_pred             cHHHHHhhh
Confidence            888888874

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.68  E-value=1.8e-14  Score=146.89  Aligned_cols=332  Identities=14%  Similarity=0.126  Sum_probs=203.6

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchH---HHHHHHHHHHhhhcCCCCCCCcEEEeCC-HHHHHHHHHHHhhcCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIE---IIRRHVAQYISRRDGQPADWQDVILSAG-ASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~---~lr~~va~~l~~~~g~~~~~~~i~~t~G-~~~al~~~~~~l~~~gd  101 (509)
                      .|..|++++.+.+........+.|....-.+   ++.+.+.+.+...++.+ +..+|++++| +|++++.++..+..+++
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~~~~~   81 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLLAEGK   81 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence            6889999999999964423333343333223   45555555555555531 2346888866 99999999999998887


Q ss_pred             CCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        102 GKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                          ++++..-...+  +.+.++..|. +..+..++...|  .+|++.++.  ++     ++++|.+++..+.||+..+ 
T Consensus        82 ----~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~v~~th~ETstGv~~~-  148 (349)
T TIGR01364        82 ----VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SE-----DAAYVHYCANETIHGVEFR-  148 (349)
T ss_pred             ----eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CC-----CCCEEEEcCCCCcccEecc-
Confidence                77666554444  5677888898 776665433223  355565542  22     7899999999999999865 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                             ++++.+++++++|.+.+....     ...+..+           + +++.|..|.+ |++|  +|.+.   .+
T Consensus       149 -------~l~~~~~~l~iVDavss~g~~-----~id~~~~-----------d-~~~~ssqK~l-gP~G--lg~l~---~s  198 (349)
T TIGR01364       149 -------ELPDVKNAPLVADMSSNILSR-----PIDVSKF-----------G-LIYAGAQKNI-GPAG--LTVVI---VR  198 (349)
T ss_pred             -------eecccCCCeEEEEccccccCc-----cCCHHHc-----------c-EEEEeccccc-CCCc--eEEEE---EC
Confidence                   556678999999999876332     2333321           1 4455779999 8888  46665   47


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++.++++....     ++..      +      |    .......-..+++...+..++..+++        |-.-...+
T Consensus       199 ~~~~~~~~~~~-----~~~~------~------~----~~~~~~~~~~~Tp~~~~i~al~~al~--------~l~~~gG~  249 (349)
T TIGR01364       199 KDLLGRASRIT-----PSML------N------Y----KIHAENDSMYNTPPTFAIYVSGLVFK--------WLKEQGGV  249 (349)
T ss_pred             HHHHhhcccCC-----CCcc------h------H----HHHHhcCCCCCCCcHHHHHHHHHHHH--------HHHHcCCH
Confidence            77777664310     0000      0      0    00000000012333335556665544        11111027


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeecc--C--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNP--V--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      +.+.++.+++.+++.+.|++++|+....  +  ..+..+.+.++  .          .....+ ....+.++||.+.+|.
T Consensus       250 e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~--~----------~~~~~~-~~~~~~~~Gi~~~~~~  316 (349)
T TIGR01364       250 KAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLG--N----------EELEKR-FLKEAEERGLVSLKGH  316 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecC--C----------hhHhHH-HHHHHHHCCCcccCCc
Confidence            8889999999999999999997764332  1  23233333332  1          101122 2346677899776654


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLK  491 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~  491 (509)
                      .  .                                                .+          .||+|+.  ++.++|+
T Consensus       317 ~--~------------------------------------------------~g----------~vRvS~~~~nt~edid  336 (349)
T TIGR01364       317 R--S------------------------------------------------VG----------GMRASIYNAMPLEGVQ  336 (349)
T ss_pred             c--c------------------------------------------------cC----------eeEEECcCCCCHHHHH
Confidence            2  1                                                22          7999988  7899999


Q ss_pred             HHHHHHHHHHHH
Q psy13922        492 AMLEKFREFHEE  503 (509)
Q Consensus       492 ~~~~~l~~~~~~  503 (509)
                      .+++.|+++.++
T Consensus       337 ~l~~al~~~~~~  348 (349)
T TIGR01364       337 ALVDFMKEFQKK  348 (349)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.68  E-value=2.5e-14  Score=152.09  Aligned_cols=215  Identities=13%  Similarity=0.066  Sum_probs=132.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+..   +. .+...+..+....+++.+.+... +...+.+++++++++|...+++..+.-    |..
T Consensus       107 hp~v~~Av~~ql~~~~---~~-~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~  181 (504)
T PLN02760        107 EPRLVAAATEQLNKLP---FY-HSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRP  181 (504)
T ss_pred             CHHHHHHHHHHHhhcc---ce-ecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCC
Confidence            6899999999998722   11 01011223445555655543321 112357999999999999999988521    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHh-cCCE------------EEEEecCCCCCCCC-------------CHHHHHHHHHhhhcc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAE-FNME------------QIGYYLDESKQWGL-------------PISELERSITEARKH  156 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~~~~~-------------d~~~L~~~i~~~~~~  156 (509)
                      .+..||...-.|++....... .|..            +..++...  .|..             ..+.|++.+.... .
T Consensus       182 ~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~  258 (504)
T PLN02760        182 NKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH--YWRFHLPGETEEEFSTRLADNLENLILKEG-P  258 (504)
T ss_pred             CCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc--ccccCCCCCcHHHHHHHHHHHHHHHHHhcC-C
Confidence            245899999899987543322 2221            11111110  0110             1244666664321 1


Q ss_pred             CCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEe
Q psy13922        157 CNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMS  235 (509)
Q Consensus       157 ~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  235 (509)
                      .++.+|++.....-.|. ..+++.+++|.++|++||+++|.||++..|...|.  ......  .++.++        +.+
T Consensus       259 ~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~--~~a~e~--~gv~PD--------ivt  326 (504)
T PLN02760        259 ETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT--MFGCDK--YNIKPD--------LVS  326 (504)
T ss_pred             CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch--hhHHHh--cCCCCc--------EEE
Confidence            25778887656666676 56789999999999999999999999998866542  222211  122222        447


Q ss_pred             cccccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        236 CSKGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       236 ~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      ++|.+ | .| +++|.++   .++++++.+..
T Consensus       327 lgK~l-g-gG~~PigAv~---~~~~i~d~~~~  353 (504)
T PLN02760        327 LAKAL-S-SAYMPIGAVL---VSPEISDVIHS  353 (504)
T ss_pred             ecccc-c-CCccccceEe---ecHHHHhhhhc
Confidence            79999 4 66 5999987   78999998863

>PRK02769 histidine decarboxylase; Provisional

Probab=99.68  E-value=5.5e-14  Score=144.56  Aligned_cols=302  Identities=11%  Similarity=0.023  Sum_probs=181.5

Q ss_pred             HHHHHHHhhc-CCC-CCCCCC---CCHHHHHHHHHHHhcccCCC--cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc-
Q psy13922          7 LSLQVLALVS-LPQ-LFDDPR---FPDDVKQRAQAVLDGCRGQS--VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-   78 (509)
Q Consensus         7 ~~~~~~~~~~-~~~-~~~~~~---~p~~v~~a~~~~l~~~~~~~--~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~-   78 (509)
                      .++++...+. .|. .++.|.   ++...++.+........+.+  ...|+.  ...++.+.+.+++.+.+|.  ++++ 
T Consensus        10 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~--~~~~~e~~~~~~~a~l~g~--~~~~~   85 (380)
T PRK02769         10 EIEDFWLYLRHNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPL--NSFDFERDVMNFFAELFKI--PFNES   85 (380)
T ss_pred             HHHHHHHHHHHhhhcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCC--ChHHHHHHHHHHHHHHhCC--CCCCC
Confidence            3444554443 333 334333   44455555555554422222  222222  2355666666666665563  3444 


Q ss_pred             -EEEeCCHHHHHHHHHHHhh--cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc
Q psy13922         79 -VILSAGASDGIKSVLKLLI--EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK  155 (509)
Q Consensus        79 -i~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  155 (509)
                       .++|+|+||++...+...+  .+++    .|+++.-.|.+....++.+|.+...++.+++  +.+|++.|++.+++.  
T Consensus        86 ~G~~TsGgTean~~a~~~ar~~~~~~----~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~--g~id~~~L~~~i~~~--  157 (380)
T PRK02769         86 WGYITNGGTEGNLYGCYLARELFPDG----TLYYSKDTHYSVSKIARLLRIKSRVITSLPN--GEIDYDDLISKIKEN--  157 (380)
T ss_pred             CEEEecChHHHHHHHHHHHHHhCCCc----EEEeCCCceehHHHHHHHcCCCCceeccCCC--CcCcHHHHHHHHHhC--
Confidence             4889999999876665543  3444    8999999999999999999999888888754  479999999999873  


Q ss_pred             cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC---cEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEE
Q psy13922        156 HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK---LFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS  232 (509)
Q Consensus       156 ~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~---i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  232 (509)
                      ..++.+|+++.++|++|.+-+   +++|+++|+++|   +++++|.+|+.+...-...... .++      .. ..+.++
T Consensus       158 ~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~-~d~------~~-~vDsis  226 (380)
T PRK02769        158 KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPP-FSF------AD-GIDSIA  226 (380)
T ss_pred             CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCcccc-CCc------cC-CCCEEE
Confidence            114888889999999999977   899999999998   6999999998855321000000 000      00 234776


Q ss_pred             EEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccc
Q psy13922        233 FMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG  312 (509)
Q Consensus       233 i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (509)
                      + |.+|.+ | .-..+|++++   .++..+.+... ..+....            |..            + .|.+....
T Consensus       227 ~-s~HK~~-~-~P~g~G~l~~---r~~~~~~~~~~-~~yl~~~------------d~t------------~-~GSR~g~~  274 (380)
T PRK02769        227 I-SGHKFI-G-SPMPCGIVLA---KKKYVERISVD-VDYIGSR------------DQT------------I-SGSRNGHT  274 (380)
T ss_pred             E-CCcccC-C-CCCCcEEEEE---ehhhhhhcccC-ccccCCC------------CCC------------c-cCCCCcHH
Confidence            6 889998 5 2345777763   44454444210 0110000            000            1 11111112


Q ss_pred             cchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEe
Q psy13922        313 QTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAF  373 (509)
Q Consensus       313 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~  373 (509)
                      ..++-..+.        +- -...+++..+...++.+++.+.|++. |++.. .|.....++
T Consensus       275 ~l~lw~aL~--------~l-g~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f  326 (380)
T PRK02769        275 ALLLWAAIR--------SL-GSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVF  326 (380)
T ss_pred             HHHHHHHHH--------HH-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEE
Confidence            222222222        11 11226778888999999999999887 87765 565555443

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.68  E-value=1.5e-14  Score=152.48  Aligned_cols=205  Identities=12%  Similarity=0.084  Sum_probs=134.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+   .... ..+    .+....+++.+.+...   ..+.+.++++++||...+++..+.-..  +++
T Consensus       117 ~p~v~~av~~ql~~---~~~~-~~~----~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~e~AlklAR~~tg--r~~  183 (474)
T PLN02482        117 DDEVLAALAETMKK---GTSF-GAP----CLLENVLAEMVIDAVP---SVEMVRFVNSGTEACMGVLRLARAYTG--REK  183 (474)
T ss_pred             CHHHHHHHHHHHhh---CCCC-CCC----CHHHHHHHHHHHHhCC---CCCEEEEeCChHHHHHHHHHHHHHhcC--CCE
Confidence            58999999999987   2222 112    2345556666654432   247899999999999999998865432  458


Q ss_pred             EEEcCCCChhHHHHHHhc---CCEEEEEecCC--------C---CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF---NMEQIGYYLDE--------S---KQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~--------~---~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      |+...-+|+++...+...   +......+..+        +   ..| -|++.+++.++...  .++.+|++.......|
T Consensus       184 Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~--~~iAavI~Epv~g~~G  260 (474)
T PLN02482        184 IIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEANK--GEIAAVILEPVVGNSG  260 (474)
T ss_pred             EEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhCC--CceEEEEECCCCCCCC
Confidence            999999999975332110   10000000000        0   001 17889998887421  2577887765556667


Q ss_pred             CC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        173 QV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       173 ~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      .+ .+++++++|.++|++||+++|+||++..| ..+.  . ...+. .++.++     +   .+++|.+ | .|+++|.+
T Consensus       261 ~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~--~-ga~~~-~gv~PD-----i---~t~gK~l-g-gG~Pigav  325 (474)
T PLN02482        261 FIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY--G-GAQEY-FGITPD-----L---TTLGKVI-G-GGLPVGAY  325 (474)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc--c-hHhHH-hCCCCC-----E---EEecchh-h-CCCceEEE
Confidence            64 45899999999999999999999999887 4321  1 11111 122222     3   4779999 5 89999999


Q ss_pred             eeecCCHHHHHHHH
Q psy13922        252 EVINLDPGVKAMLH  265 (509)
Q Consensus       252 ~~~~~~~~~~~~l~  265 (509)
                      +   +++++++.+.
T Consensus       326 ~---g~~ei~~~~~  336 (474)
T PLN02482        326 G---GRREIMEMVA  336 (474)
T ss_pred             E---EcHHHHHhhc
Confidence            7   7999999885

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=3.7e-14  Score=147.55  Aligned_cols=307  Identities=13%  Similarity=0.049  Sum_probs=186.4

Q ss_pred             CCCCCCHHHHHHHHHHHhccc--CCCc-ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCR--GQSV-GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~--~~~~-~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ..+..++.+++++-..+...-  +... .-|+......++.....+...+.+|  .+..||-.-+|+ .|...++.++++
T Consensus        57 sEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~Sg~-~An~~v~~all~  133 (493)
T PRK13580         57 SENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHSGA-DANLVAFWAILA  133 (493)
T ss_pred             ccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCCcH-HHHHHHHHHHhc
Confidence            556668888888776666521  1111 1245555555666666666666665  334567766776 577788888887


Q ss_pred             C-------------------------------CCCCCCeEEEcCCCChhHH-----HHHHhcCCEEEEEecCCCCCCCCC
Q psy13922         99 D-------------------------------VDGKKPGVLIPIPQYPLYS-----ASLAEFNMEQIGYYLDESKQWGLP  142 (509)
Q Consensus        99 ~-------------------------------gd~~~~~Vlv~~p~y~~~~-----~~~~~~g~~~~~v~~~~~~~~~~d  142 (509)
                      |                               ||    +|+...+...++.     ..+.....+...++++++ ...+|
T Consensus       134 ~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd----~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD  208 (493)
T PRK13580        134 HKVESPALEKLGAKTVNDLTEEDWEALRAELGNQ----RLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLD  208 (493)
T ss_pred             ccccCcchhccccccccccchhhhhhhhccCCCC----EEEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccC
Confidence            6                               55    8888766554331     222222366677777644 34799


Q ss_pred             HHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhC
Q psy13922        143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG  222 (509)
Q Consensus       143 ~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~  222 (509)
                      .+.+++.+.+     +++.|+++..+|-++ ..+   +++|.++|+++|+++++|++|......++. ..  ....+ . 
T Consensus       209 ~d~l~~~~~~-----~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~-~~--~~~~~-~-  274 (493)
T PRK13580        209 YDEIAALARE-----FKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV-FT--GDEDP-V-  274 (493)
T ss_pred             HHHHHHHHhh-----cCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceecccc-ch--hhcCC-C-
Confidence            9999999988     677777777777644 555   899999999999999999999887665321 10  00000 0 


Q ss_pred             CCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHH
Q psy13922        223 EPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQA  301 (509)
Q Consensus       223 ~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (509)
                         .+.+ |+++|++|++.   |-+.|+++   .++++++.+.+.... ++++.....++                    
T Consensus       275 ---~~~D-~vtgT~hKaL~---GP~GG~I~---~~~~l~~~L~~a~P~i~gg~l~p~iAA--------------------  324 (493)
T PRK13580        275 ---PHAD-IVTTTTHKTLR---GPRGGLVL---AKKEYADAVDKGCPLVLGGPLPHVMAA--------------------  324 (493)
T ss_pred             ---CCCc-EEEeCChhhcc---CCCeEEEE---ecHHHHHHHhhCCCcccCCCccHHHHH--------------------
Confidence               1223 45679999873   44568887   688888888543321 22222220000                    


Q ss_pred             hhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc--CCceeEEeecCCCC
Q psy13922        302 VLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP--VQGAMYAFPQMKLP  379 (509)
Q Consensus       302 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~~g~~~~~~~~~~  379 (509)
                                ...++..+..             .+.+..++.+.++...|.+.|.+. |+.+..  .++ -.+++++.-.
T Consensus       325 ----------~avAl~e~~~-------------~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTds-hIV~V~lg~~  379 (493)
T PRK13580        325 ----------KAVALAEART-------------PEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDN-HLVLIDVTSF  379 (493)
T ss_pred             ----------HHHHHHHHhC-------------ccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCC-CEEEEEeCCH
Confidence                      1111221111             012456788888999999999888 887652  333 3445555411


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       380 ~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      .            ..-..+.+.|.+.||.+.+-.....
T Consensus       380 ~------------~~g~~a~~~L~e~GI~vn~i~~Ptv  405 (493)
T PRK13580        380 G------------LTGRQAESALLDAGIVTNRNSIPSD  405 (493)
T ss_pred             H------------HHHHHHHHHHHHCCeEEccccCCCC
Confidence            1            0112256788899999986554333

>PRK07678 aminotransferase; Validated

Probab=99.67  E-value=4.8e-14  Score=148.60  Aligned_cols=213  Identities=10%  Similarity=0.055  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+....... |.     .+....+++.+.+..+   ..+.+++++++++|++.+++..+.-    |.+
T Consensus        65 ~p~v~~ai~~q~~~~~~~~~~-~~-----~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~  135 (451)
T PRK07678         65 RKELAEAAYEQLKTLSYFPLT-QS-----HEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANETAFKIARQYHAQKGEP  135 (451)
T ss_pred             CHHHHHHHHHHHHhcCccccc-cC-----CHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            688999999998873211111 22     2233445554443322   1247999999999999999887542    322


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCC--CCCC-----C---HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESK--QWGL-----P---ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~~-----d---~~~L~~~i~~~~~~~~~  159 (509)
                      .+..|+...-+|++....+... |.            .+..++.....  .|..     |   ++.+++.++... ..++
T Consensus       136 ~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~i  214 (451)
T PRK07678        136 HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWEL-SETI  214 (451)
T ss_pred             CCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcC-CCce
Confidence            3458999999999876544322 11            11222211100  0100     1   233555665211 1268


Q ss_pred             eEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      .+|++...+.-.|. ..+++.++++.++|++||+++|.||++..|...|.  ......  .++.++     ++   +++|
T Consensus       215 AAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~~~--~gv~PD-----iv---t~gK  282 (451)
T PRK07678        215 AAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK--AFGFMN--YGVKPD-----II---TMAK  282 (451)
T ss_pred             EEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch--hHHHHh--cCCCCC-----EE---Eeec
Confidence            88888655555665 57889999999999999999999999999866542  222222  222222     33   6699


Q ss_pred             ccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        239 GYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       239 ~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      .+ | .| +++|.++   .++++++.+..
T Consensus       283 ~l-g-gG~~Pi~av~---~~~~i~~~~~~  306 (451)
T PRK07678        283 GI-T-SAYLPLSATA---VKKEIYEAFKG  306 (451)
T ss_pred             cc-c-cCCcceeEEE---EcHHHHHHHhc
Confidence            99 4 67 7999998   78999988863

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.67  E-value=2.7e-14  Score=147.61  Aligned_cols=342  Identities=12%  Similarity=0.051  Sum_probs=196.7

Q ss_pred             CCCCCCHH-HHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeC-CHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDD-VKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSA-GASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~-v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~-G~~~al~~~~~~l~~~   99 (509)
                      |+-.+|+. |++++.+....   ..+....-..-+.+.|+.+++++    +.+ ++++|++++ |+|.+++.++..+.++
T Consensus        19 Gp~~~~~~~v~~a~~~~~~~---~~hr~~~f~~~~~~~r~~l~~l~----~~~-~~~~v~~~~gs~T~~~~~~~~~l~~~   90 (378)
T PRK03080         19 GPCKKRPGWQLEALADALLG---RSHRQKPVKALLKRVIEGTRELL----SLP-EGYEVGIVPGSDTGAWEMALWSLLGA   90 (378)
T ss_pred             CCcCCChHHHHHHHHhhhcc---cCcCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEECCchHHHHHHHHHhcCCC
Confidence            45556777 99998754432   11110111233455666677666    421 345788875 8999999999999764


Q ss_pred             CCCCCCeEEEcCCCChh-HHH-HHHhcCC-EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPL-YSA-SLAEFNM-EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~-~~~-~~~~~g~-~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ++   ..|++ .-.|.. +.. ..+..|. ++..++.+..  ..+|+++++          .++.|.+++..|.||..++
T Consensus        91 ~~---~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g--~~~d~~~i~----------~~~~V~~~h~~t~tG~~~p  154 (378)
T PRK03080         91 RR---VDHLA-WESFGSKWATDVVKQLKLEDPRVLEADYG--SLPDLSAVD----------FDRDVVFTWNGTTTGVRVP  154 (378)
T ss_pred             Cc---ceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCC--CCCCHhhcC----------CCCCEEEEecCCccceecc
Confidence            22   14444 445554 233 2366788 8888876533  255666532          2456788999999999998


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                         +++|++  +++|+++|+|.+++....     ...+..+           +++ +.|..|.+.|.+|  +|++.   .
T Consensus       155 ---i~~I~~--~~~g~~~vVDa~qs~G~~-----pidv~~i-----------D~~-~~s~~K~l~~P~G--~g~l~---v  207 (378)
T PRK03080        155 ---VARWIG--ADREGLTICDATSAAFAL-----PLDWSKL-----------DVY-TFSWQKVLGGEGG--HGMAI---L  207 (378)
T ss_pred             ---chhhcc--ccCCCeEEEecccccccC-----CCCHHHC-----------cEE-EEehhhhCCCCCc--eEEEE---E
Confidence               777777  789999999999877432     2333331           155 4477999854466  56665   4


Q ss_pred             CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc---ccchhhcccCCCCCCCCchHHH
Q psy13922        257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV---GQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~al~~~~~~~~~~~~~~~~~  333 (509)
                      +++.++++......+..+..+         +   +... .......++.+.....   +..++..+++          ..
T Consensus       208 ~~~~~~~~~p~~~~~~~~~~~---------~---~~~~-~~~~~~~~~~~t~~tp~i~~i~~l~~al~----------~l  264 (378)
T PRK03080        208 SPRAVERLESYTPARPIPKFF---------R---LTKG-GKAIENSFKGQTINTPSMLTVEDYLDQLD----------WA  264 (378)
T ss_pred             CHHHHHhhhcccCCCCCchhh---------e---eccc-hHHhhhhhcCCcccCchHHHHHHHHHHHH----------HH
Confidence            788888776432211111110         0   0000 0000011222222222   2222233332          12


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHhcCCCCeecc--C--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        334 SR--EKQSVLDSLKQRAKMVADTFNSIEGMSCNP--V--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       334 ~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                      .+  .++.+.++.+++.+++.+.|++++++.+..  +  .++..+.+.++-+..        +  .+..+...++ ++||
T Consensus       265 ~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~--------~--~~~~~~~~l~-~~~i  333 (378)
T PRK03080        265 NSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQA--------A--VDAAAVAKLL-RENG  333 (378)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchH--------H--HHHHHHHHHH-HcCC
Confidence            22  257778888889999999999886666542  1  232333333331000        0  1223344554 4588


Q ss_pred             EEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--c
Q psy13922        408 CIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--P  485 (509)
Q Consensus       408 ~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~  485 (509)
                      .+..|.....                                                .+          .||+|+.  +
T Consensus       334 ~v~~g~~~~~------------------------------------------------~~----------~vRis~~~~~  355 (378)
T PRK03080        334 AVDIEPYRDA------------------------------------------------PN----------GLRIWCGPTV  355 (378)
T ss_pred             eeccccccCC------------------------------------------------CC----------cEEEecCCCC
Confidence            8876542111                                                22          7999988  8


Q ss_pred             ChHHHHHHHHHHHHHHHHHHh
Q psy13922        486 QPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      ++++|+.+++.|++++++++.
T Consensus       356 t~~di~~l~~al~~~~~~~~~  376 (378)
T PRK03080        356 EPADVEALTPWLDWAFERLKA  376 (378)
T ss_pred             CHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999887654

>PRK05965 hypothetical protein; Provisional

Probab=99.66  E-value=1.9e-14  Score=151.97  Aligned_cols=214  Identities=14%  Similarity=0.093  Sum_probs=135.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcc-cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG-SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~-~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd  101 (509)
                      +|.|.+++.+++......... .|.     .+.+..+++.+.+...  -..+.++++++++||++.+++..+.-    |.
T Consensus        64 ~p~i~~Ai~~q~~~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~  136 (459)
T PRK05965         64 QESIVEAAAEQMRELPYATGYFHFG-----SEPAIRLAAKLAERAP--GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGR  136 (459)
T ss_pred             CHHHHHHHHHHHHhcCCcccccccC-----CHHHHHHHHHHHhhCC--CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCC
Confidence            588999999999873211110 121     2233445555543322  13458999999999999999986542    32


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCC--CCCCCCC--------HHHHHHHHHhhhccCC
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDE--SKQWGLP--------ISELERSITEARKHCN  158 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~--~~~~~~d--------~~~L~~~i~~~~~~~~  158 (509)
                      +.|..|+....+|++........ +.            .+..++...  ...+.-|        ++.+++.+.... ..+
T Consensus       137 ~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~  215 (459)
T PRK05965        137 PSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELG-ADN  215 (459)
T ss_pred             CCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcC-CCc
Confidence            23557999999999875432221 11            011222110  0001123        256777776421 126


Q ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +.+|++...+...|. ..|++.+++|.++|++||+++|.||++..|...|  .+.....  .++.++     ++   +++
T Consensus       216 iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG--~~~a~~~--~gv~PD-----iv---~~g  283 (459)
T PRK05965        216 VAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG--PLFACEA--EGVVPD-----LM---TVA  283 (459)
T ss_pred             eEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc--hhhhHhh--cCCCCC-----eE---Eec
Confidence            888888766666776 6788999999999999999999999999987654  2222222  122222     44   569


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      |.+ | .| +++|.++   .++++++.+.
T Consensus       284 Kgl-~-gG~~Pi~av~---~~~~i~~~~~  307 (459)
T PRK05965        284 KGL-T-SGYVPMGAVL---MSDHVYQGIA  307 (459)
T ss_pred             hhh-c-cCCcceeEEE---EcHHHHHHHh
Confidence            999 4 79 5999998   7899988775

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.66  E-value=7.5e-14  Score=146.75  Aligned_cols=213  Identities=12%  Similarity=0.098  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++..........|.     .+....+|+.+.+..+.+ ..+.++++++++||++.+++..+....  +++
T Consensus        72 ~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lAe~L~~~~p~~-~~~~v~f~~SGsEA~e~AlklAr~~tg--r~~  143 (441)
T PRK05769         72 HPKVVKAVKEQAEKFLHYSLTDFY-----YEPAVELAERLVEIAPGG-FEKKVFFTNSGTESNEAAIKIARYHTG--RKY  143 (441)
T ss_pred             CHHHHHHHHHHHHhccCccCcccC-----CHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHHhC--CCe
Confidence            588999999999872211111121     233455555554432210 135899999999999999998765422  457


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCC--CCC-CC--------HHHHHHHH-HhhhccCCce
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESK--QWG-LP--------ISELERSI-TEARKHCNPR  160 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~--~~~-~d--------~~~L~~~i-~~~~~~~~~~  160 (509)
                      |+...-+|++....+... +.             .+..++.....  .|. -|        ++.+++.+ +......++.
T Consensus       144 Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ia  223 (441)
T PRK05769        144 IIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVA  223 (441)
T ss_pred             EEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceE
Confidence            999899999876544322 11             12222221100  011 01        23355422 2111112678


Q ss_pred             EEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        161 AIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       161 ~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +|++.......|. ..+++.+++|.++|++||+++|+||++.+|...+  ...+...+  .+.+     +++   ++||.
T Consensus       224 avi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G--~~~a~~~~--gv~p-----Div---t~~K~  291 (441)
T PRK05769        224 AIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG--KMFAIEHF--GVEP-----DII---TLAKA  291 (441)
T ss_pred             EEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--ceehhhcc--CCCC-----CEE---EEccc
Confidence            8888656666676 5678999999999999999999999999876554  22222221  1222     144   57999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                      + | .|+++|+++   .++++++.+
T Consensus       292 l-~-~G~p~gav~---~~~~i~~~~  311 (441)
T PRK05769        292 I-A-GGLPLGAVI---GRAELMFLP  311 (441)
T ss_pred             c-c-CCcccEEEE---EehhhhhcC
Confidence            9 5 789999988   677776543

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.66  E-value=2.7e-15  Score=136.05  Aligned_cols=165  Identities=16%  Similarity=0.159  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH-HHHHhcCCEEEEEecC
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS-ASLAEFNMEQIGYYLD  134 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~  134 (509)
                      .++++.++++++      ...+++++++|+++++..++.++.++++    +|+++.++|.+.. ..++..|.++..++.+
T Consensus         3 ~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~   72 (170)
T cd01494           3 EELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGD----EVIVDANGHGSRYWVAAELAGAKPVPVPVD   72 (170)
T ss_pred             HHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCC----EEEEeecccceehhhHHHhcCCEEEEeccC
Confidence            578888888883      4567899999999999999999987777    9999999999988 8888999999999887


Q ss_pred             CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccH
Q psy13922        135 ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF  214 (509)
Q Consensus       135 ~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~  214 (509)
                      +......+.+.+++....    .+++++++++++||+|...+   +++|.++|+++|+++|+|++|..+......  ...
T Consensus        73 ~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~  143 (170)
T cd01494          73 DAGYGGLDVAILEELKAK----PNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLI  143 (170)
T ss_pred             CCCccchhhhhhhhcccc----CceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc--ccc
Confidence            654333333355443322    27899999999999999987   488888999999999999999987654311  000


Q ss_pred             HHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        215 KKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       215 ~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                          ...     .. .+++.|++|.+ |.  .++|+++
T Consensus       144 ----~~~-----~~-d~~~~s~~K~~-~~--~~~G~l~  168 (170)
T cd01494         144 ----PEG-----GA-DVVTFSLHKNL-GG--EGGGVVI  168 (170)
T ss_pred             ----ccc-----cC-CEEEEEccccc-CC--CceEEEE
Confidence                010     11 35566999999 43  6789986

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK07046 aminotransferase; Validated

Probab=99.66  E-value=5.8e-14  Score=147.78  Aligned_cols=202  Identities=13%  Similarity=0.114  Sum_probs=130.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+   .....+ +.    +...++++.+.+..    ..+.+.++++++||...+++..+.-..  |+.
T Consensus        93 ~p~i~~Av~~q~~~---~~~~~~-~~----~~~~~lAe~l~~~~----~~~~v~F~nSGtEA~e~AlrlAR~~TG--r~~  158 (453)
T PRK07046         93 PAPVARALAEQARR---GLTTML-PS----EDAAWVGEELARRF----GLPYWQVATTATDANRFVLRWARAVTG--RPK  158 (453)
T ss_pred             CHHHHHHHHHHHHh---CCCCCC-CC----HHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHhhC--CCE
Confidence            58999999999987   333222 22    34444555554432    257899999999999999998765432  458


Q ss_pred             EEEcCCCChhHHHHHHh--cCCEEE------EEe--cCCC---CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC-
Q psy13922        107 VLIPIPQYPLYSASLAE--FNMEQI------GYY--LDES---KQWGLPISELERSITEARKHCNPRAIVIINPGNPTG-  172 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~--~g~~~~------~v~--~~~~---~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG-  172 (509)
                      |+...-+|+++......  .+.+..      .++  ....   -.| -|++.+++.+...    ++.+|++.....-.| 
T Consensus       159 ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~----~vAavi~EPi~g~~G~  233 (453)
T PRK07046        159 ILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADG----DVAAVLAEPAMTNIGM  233 (453)
T ss_pred             EEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCC----CeEEEEECCCCCCCCC
Confidence            99999999997432211  110000      000  0000   011 2788998888532    688888854444445 


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ...+++.++++.++|++||+++|.||++. |..+-+.    .... .++.++     ++   +++|.+ | .|+++|.++
T Consensus       234 ~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg----~~~~-~gv~PD-----i~---t~gK~l-g-gG~Pi~av~  297 (453)
T PRK07046        234 VLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG----YTRA-HGLEPD-----FL---VVGKPI-A-GGVPCAVYG  297 (453)
T ss_pred             cCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc----hhHH-hCCCcc-----ce---eehhhh-c-CCCcceeee
Confidence            46677899999999999999999999997 5332221    1111 122222     33   679999 5 799999987


Q ss_pred             eecCCHHHHHHHHH
Q psy13922        253 VINLDPGVKAMLHK  266 (509)
Q Consensus       253 ~~~~~~~~~~~l~~  266 (509)
                         .++++++.+..
T Consensus       298 ---g~~~i~~~~~~  308 (453)
T PRK07046        298 ---FSAELAERAQA  308 (453)
T ss_pred             ---ehHHHHHHHhh
Confidence               79999998863

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.66  E-value=1.9e-14  Score=150.53  Aligned_cols=212  Identities=9%  Similarity=0.089  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      .|.|.+++.+++.+........| ......+|.+.+++.+    .  ...+.+++++++++|++.+++..+.-    +.+
T Consensus        62 ~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~lae~L~~~~----p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~  134 (429)
T PRK06173         62 HPRLNAAATNQLAKMSHIMFGGF-THEPAVELAQKLLEIL----P--PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEV  134 (429)
T ss_pred             CHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHhhC----C--CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCC
Confidence            48899999999987321111112 2222234444444433    2  12368999999999999999887642    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCCCCC-----CCHHHHHHHHHhhhccCCceEEE
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESKQWG-----LPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~-----~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      .+.+|+....+|++........ |-             .+..+|.... .+.     -+++.|++.+....  .++.+|+
T Consensus       135 ~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l~~l~~~i~~~~--~~iAAvi  211 (429)
T PRK06173        135 QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDEAIEPLQDLLEQKG--DEIAALI  211 (429)
T ss_pred             CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHHHHHHHHHHHHhCC--CcEEEEE
Confidence            3457999999999854322211 10             0111221100 010     13566777776321  2688888


Q ss_pred             EeCC-CCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        164 IINP-GNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       164 i~~p-~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +... +.-.|. ..+++.+++|.++|++||+++|+||++.+|..+|  .......  .++.++     ++   +++|.+ 
T Consensus       212 ~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG--~~~a~~~--~gv~PD-----iv---~~gK~l-  278 (429)
T PRK06173        212 LEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG--KLFALEH--AGVVPD-----IM---CIGKAL-  278 (429)
T ss_pred             EcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC--cchHHHh--cCCCCC-----EE---Eeehhh-
Confidence            8753 676776 4799999999999999999999999998875443  1211211  122221     33   479999 


Q ss_pred             CCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        242 GECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       242 G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      | .| +.++.++   .++++++.+.
T Consensus       279 ~-gG~~p~~a~~---~~~~i~~~~~  299 (429)
T PRK06173        279 T-GGYLTLSATI---TTEAIAQTIC  299 (429)
T ss_pred             h-CCccccceEE---ecHHHHHHHh
Confidence            4 78 5888887   7889988875

>PRK07482 hypothetical protein; Provisional

Probab=99.65  E-value=5.6e-14  Score=148.43  Aligned_cols=215  Identities=15%  Similarity=0.051  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+..  ....+.  ....+.+..+|+.+.+...  -..+.++++++++||++.+++..+..    |..
T Consensus        68 ~p~v~~Av~~q~~~~~--~~~~~~--~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~  141 (461)
T PRK07482         68 RTEVAEAIAEQAKELA--YYHTYV--GHGTEASITLSKRIIDRAP--AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRP  141 (461)
T ss_pred             CHHHHHHHHHHHHhcC--cccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            7899999999998831  111110  0113445555555544322  12468999999999999999987532    322


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCCC---CC--------CCHHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESKQ---WG--------LPISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~---~~--------~d~~~L~~~i~~~~~~~~  158 (509)
                      .|..|+.....|++....+.....             .+..++.....+   +.        -+++.+++.+.... ..+
T Consensus       142 ~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~  220 (461)
T PRK07482        142 EKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEG-PDT  220 (461)
T ss_pred             CCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            356899999999987543322211             111111110000   00        03567777775321 126


Q ss_pred             ceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +.+|++...+.-.|.. .+++.+++|.++|++||+++|.||++..|...+.  ......  .++.++     ++   +++
T Consensus       221 iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~a~~~--~gv~PD-----iv---~~g  288 (461)
T PRK07482        221 IAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS--MFGSDH--YGIEPD-----LI---TVA  288 (461)
T ss_pred             EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc--hhhHHh--cCCCCC-----EE---EEc
Confidence            8888886556656764 6888999999999999999999999999866542  222222  223332     44   569


Q ss_pred             cccCCCCCC-eeEEEeeecCCHHHHHHHH
Q psy13922        238 KGYMGECGL-RGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       238 K~~~G~~Gl-r~G~v~~~~~~~~~~~~l~  265 (509)
                      |.++  .|. ++|.++   ..+++.+.+.
T Consensus       289 Kgl~--gG~~Pi~av~---~~~~i~~~~~  312 (461)
T PRK07482        289 KGLT--SAYAPLSGSI---VGEKVWDVLE  312 (461)
T ss_pred             cccc--cCccccceee---ecHHHHHHHh
Confidence            9994  785 999887   6888888775

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.65  E-value=1.4e-13  Score=139.71  Aligned_cols=167  Identities=20%  Similarity=0.242  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v  131 (509)
                      ..|.+.++.+-        ..+..+.+++++.||..++..+.++||    +|+++...|.+....    +++.|.++..+
T Consensus        66 ~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD----~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~  133 (396)
T COG0626          66 DALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGD----HVLLPDDLYGGTYRLFEKILQKFGVEVTFV  133 (396)
T ss_pred             HHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCC----EEEecCCccchHHHHHHHHHHhcCeEEEEE
Confidence            56777777766        356788999999999999999999999    999999888876544    45678888877


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +..       +.+.+++++.+.    ++++|++.+|.||+-.+.+   +.+|+++|+++|+++|+|+.|....+..    
T Consensus       134 d~~-------~~~~~~~~~~~~----~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~----  195 (396)
T COG0626         134 DPG-------DDEALEAAIKEP----NTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR----  195 (396)
T ss_pred             CCC-------ChHHHHHHhccc----CceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC----
Confidence            533       456666666632    7999999999999988866   9999999999999999999998754431    


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                       ++.     .+.      -|+++|.+|.++|...+=.|.++  +.++.+.+.+..
T Consensus       196 -PL~-----~Ga------DIVvhSaTKyl~GHsDvl~G~v~--~~~~~~~~~~~~  236 (396)
T COG0626         196 -PLE-----LGA------DIVVHSATKYLGGHSDVLGGVVL--TPNEELYELLFF  236 (396)
T ss_pred             -hhh-----cCC------CEEEEeccccccCCcceeeeEEe--cChHHHHHHHHH
Confidence             211     111      47789999999887777777554  356677776643

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.65  E-value=4.7e-14  Score=147.93  Aligned_cols=206  Identities=9%  Similarity=0.017  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|.|.+++.+++.+   .....+ +.    +....+++.+.+...   ..+.+++++++++|+..+++..+.-..  +..
T Consensus        71 ~p~v~~ai~~q~~~---~~~~~~-~~----~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tg--r~~  137 (428)
T PRK12389         71 HPHITKAITEAAEN---GVLYGT-PT----ELEIEFAKMLKEAIP---SLEKVRFVNSGTEAVMTTIRVARAYTG--RTK  137 (428)
T ss_pred             CHHHHHHHHHHHHh---CCccCC-CC----HHHHHHHHHHHHhCC---CCcEEEEeCCHHHHHHHHHHHHHHhhC--CCE
Confidence            58899999999987   222212 22    233445555443322   246899999999999999998765432  457


Q ss_pred             EEEcCCCChhHHHHHHhc-CCEEEE--------Ee--cCCC-CCC-CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NMEQIG--------YY--LDES-KQW-GLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~~~~~--------v~--~~~~-~~~-~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |+...-+|++....+... |.....        ++  ..+. ..+ ..|++.+++.+++..  .++.+|++....+..|.
T Consensus       138 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~vaavi~EPv~g~~G~  215 (428)
T PRK12389        138 IIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWG--DEVAAVLVEPIVGNFGI  215 (428)
T ss_pred             EEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcC--CcEEEEEEeCCCCCCCC
Confidence            999899999876544332 211110        00  0000 000 126889988887432  25778888766666786


Q ss_pred             -CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 -VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 -~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                       ..+++.+++|.++|++||+++|.||++..| ..+.   ....+. .++.++     +   .+++|.+ | .|+++|.++
T Consensus       216 ~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~---~~a~~~-~gv~PD-----i---vt~gK~l-g-gG~Pi~av~  280 (428)
T PRK12389        216 VEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY---GGAQDL-LGVEPD-----L---TALGKII-G-GGLPIGAYG  280 (428)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc---chhhHH-hCCCCC-----e---eeechhh-c-CCCceeEEe
Confidence             557899999999999999999999999988 3321   111111 122222     3   3779999 4 789999997


Q ss_pred             eecCCHHHHHHHH
Q psy13922        253 VINLDPGVKAMLH  265 (509)
Q Consensus       253 ~~~~~~~~~~~l~  265 (509)
                         .++++++.+.
T Consensus       281 ---~~~~i~~~~~  290 (428)
T PRK12389        281 ---GRKDIMEQVA  290 (428)
T ss_pred             ---EHHHHHhhhc
Confidence               7899998875

>PLN02880 tyrosine decarboxylase

Probab=99.65  E-value=3.1e-13  Score=143.41  Aligned_cols=191  Identities=12%  Similarity=0.091  Sum_probs=136.3

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCC-----CCcEEEeCCHHHHHHHHHHHhhcC-----C--CCCCCeEEEcCCCChh
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPAD-----WQDVILSAGASDGIKSVLKLLIED-----V--DGKKPGVLIPIPQYPL  116 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~~-----g--d~~~~~Vlv~~p~y~~  116 (509)
                      |....+..++.+.+.+|+.+.+|.+-.     ...-++|+|+|+++..++.+.++.     +  ..++-.|++++-.|.+
T Consensus       114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S  193 (490)
T PLN02880        114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA  193 (490)
T ss_pred             cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence            444445688999999999999885522     124678899999887777665431     1  0012246678888999


Q ss_pred             HHHHHHhcCCE---EEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc
Q psy13922        117 YSASLAEFNME---QIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL  192 (509)
Q Consensus       117 ~~~~~~~~g~~---~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i  192 (509)
                      ...++..+|..   ++.||.+..+++.+|++.|++.|++..+. ..+-+|+.+...-.||.+-|   +++|+++|++||+
T Consensus       194 v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~i  270 (490)
T PLN02880        194 LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNGM  270 (490)
T ss_pred             HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcCC
Confidence            99999999984   78888886556799999999999875332 23555666788899999966   9999999999999


Q ss_pred             EEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       193 ~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      |+++|.+|+.+..-.    +.+......+    ...+.+++ +++|.+ + .....|.+.+
T Consensus       271 wlHVDaA~gg~~~~~----~~~~~~l~gi----e~aDSit~-d~HKwl-~-~P~~~g~llv  320 (490)
T PLN02880        271 WFHVDAAYAGSACIC----PEYRHYIDGV----EEADSFNM-NAHKWF-L-TNFDCSLLWV  320 (490)
T ss_pred             EEEEehhhHHHHHhC----HHHHHHhcCc----hhcCEEEE-Cchhhc-C-CCccEEEEEE
Confidence            999999998865321    1122222211    12236766 889998 3 6677888875

>KOG0053|consensus

Probab=99.65  E-value=1.4e-13  Score=138.08  Aligned_cols=177  Identities=18%  Similarity=0.204  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v  131 (509)
                      ..+.+.+++..        ...+++++++++.|+..++..|+..|+    +|+..+.+|.+....++    ..|.+...+
T Consensus        80 ~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~----~iV~~~~~Y~gT~~~l~~~~~~~gie~~~v  147 (409)
T KOG0053|consen   80 DVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGD----HIVATGDVYGGTLRILRKFLPKFGGEGDFV  147 (409)
T ss_pred             HHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCC----cEEEeCCCcccHHHHHHHHHHHhCceeeee
Confidence            44566666555        345688888888999999999999888    99999999999776654    458888777


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      ..+       |++.+++++++     ++++|++.+|.||+..+.+   +++|.++|+++|+++|+|+.+......     
T Consensus       148 d~~-------~~~~~~~~i~~-----~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~-----  207 (409)
T KOG0053|consen  148 DVD-------DLKKILKAIKE-----NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQ-----  207 (409)
T ss_pred             chh-------hHHHHHHhhcc-----CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCccccc-----
Confidence            654       57888888887     8999999999999999966   899999999999999999999875322     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                       ....+    +.      -|+++|.+|.++|...+=.|.++.  ..+++..+++..+. ..++.+..
T Consensus       208 -~pL~l----GA------DIV~hSaTKyi~Ghsdvi~G~iv~--n~~~~~~~l~~~~~~lg~~~~p~  261 (409)
T KOG0053|consen  208 -DPLPL----GA------DIVVHSATKYIGGHSDVIGGSVVL--NSEELASRLKFLQEDLGWCEDPF  261 (409)
T ss_pred             -Chhhc----CC------CEEEEeeeeeecCCcceeeeEEec--CcHHHHHHHHHHHHHhcCCCCHH
Confidence             11111    11      467899999998887777787762  45899999988775 23344443

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=2.7e-13  Score=142.89  Aligned_cols=210  Identities=15%  Similarity=0.126  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+...... .|.......+|-+.+++..    +  ...+.++++++++||++.+++..+....  +..
T Consensus        71 ~p~i~~Ai~~ql~~~~~~~~-~~~~~~~~~~lae~L~~~~----p--~~~~~v~f~~SGsEA~e~AlklAr~~tg--r~~  141 (457)
T PRK05639         71 HPKLVKAVQEQVALIQHSMI-GYTHSERAIRVAEKLAEIS----P--IENPKVLFGLSGSDAVDMAIKVSKFSTR--RPW  141 (457)
T ss_pred             CHHHHHHHHHHHHhcccccc-CccCCHHHHHHHHHHHhhC----C--CCcCEEEEeCchHHHHHHHHHHHHHhcC--CCe
Confidence            67899999999887321111 1332222233444444432    2  1225899999999999999998865432  457


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCC--CCC----CCHH--------HHHHHHHhh-hccC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESK--QWG----LPIS--------ELERSITEA-RKHC  157 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~--~~~----~d~~--------~L~~~i~~~-~~~~  157 (509)
                      |+....+|++....+... +.             .+..+|.....  .|.    -|.+        .+++.+... ....
T Consensus       142 ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~  221 (457)
T PRK05639        142 ILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPD  221 (457)
T ss_pred             EEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999876543322 11             12223322110  000    0222        344433211 0113


Q ss_pred             CceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        158 NPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                      ++.+|++...+...|. ..+++.+++|.++|++||+++|.||++..|...+  .......  .++.++     ++   ++
T Consensus       222 ~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG--~~~a~~~--~gv~PD-----iv---~~  289 (457)
T PRK05639        222 EVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG--KWFASEW--FEVKPD-----LI---IF  289 (457)
T ss_pred             ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc--hHHHHHh--cCCCCC-----EE---Ee
Confidence            6888888766666676 6678999999999999999999999999875543  1112111  122222     44   46


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      +|.+ | .|+++|.++   .++++++
T Consensus       290 gK~l-~-gG~pi~av~---~~~~i~~  310 (457)
T PRK05639        290 GKGV-A-SGMGLSGVI---GRKELMD  310 (457)
T ss_pred             chhh-c-CCCcceeEE---ehHHHHh
Confidence            9999 4 789999998   7888888

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.64  E-value=6.4e-14  Score=147.23  Aligned_cols=215  Identities=13%  Similarity=0.134  Sum_probs=132.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.+.+++.+++.+........+.     .+....+++.+.+...  -..+.|++++++++|++.+++..+..    +.+
T Consensus        64 ~p~v~~ai~~ql~~l~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~  136 (442)
T PRK13360         64 RPEIVEAVRAQAGELDYAPAFQMG-----HPKAFELANRIAEIAP--GGLNHVFFTNSGSESVDTALKIALAYHRARGEG  136 (442)
T ss_pred             CHHHHHHHHHHHHhCCCcccCCcC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            688999999999873211111121     2334445555543321  12358999999999999999876532    212


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-C------------CEEEEEecCC--C-CCCCC--------CHHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-N------------MEQIGYYLDE--S-KQWGL--------PISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~--~-~~~~~--------d~~~L~~~i~~~~~~~~  158 (509)
                      .|.+|+....+|++....+... |            ..+..+|...  . ..|..        ..+.|++.+.... ..+
T Consensus       137 ~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~~~  215 (442)
T PRK13360        137 SRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHD-AST  215 (442)
T ss_pred             CCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcC-CCc
Confidence            2458999999999875432211 1            1122222211  0 01111        1456777775321 125


Q ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +.+|++.......|. ..+++.+++|.++|++||+++|+||++..|...|.  ......  .++.++     +   .+++
T Consensus       216 ~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~a~~~--~gv~PD-----i---vt~g  283 (442)
T PRK13360        216 IAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--PFAAQY--FGVTPD-----L---LTCA  283 (442)
T ss_pred             EEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhhhh--cCCCCc-----e---eeee
Confidence            778887666666776 56889999999999999999999999988755442  212111  122222     3   3779


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |.+ | .| +++|.++   .++++++.+..
T Consensus       284 K~l-~-gG~~P~gav~---~~~~i~~~~~~  308 (442)
T PRK13360        284 KGL-T-NGAIPMGAVF---VSSEIHDAFMQ  308 (442)
T ss_pred             ecc-c-cCccceEEEE---EcHHHHHHhhc
Confidence            999 4 56 7999987   68898887753

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.64  E-value=4.5e-14  Score=147.53  Aligned_cols=213  Identities=12%  Similarity=0.164  Sum_probs=133.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+........+ .    .+.+..+++.|.+..+  -..+.++++++++||++.+++..+.-    |. 
T Consensus        61 ~p~i~~Ai~~q~~~~~~~~~~~~-~----~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~-  132 (428)
T PRK07986         61 HPQLNAAMKSQIDAMSHVMFGGI-T----HPPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE-  132 (428)
T ss_pred             CHHHHHHHHHHHhhcCCcccccc-C----CHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC-
Confidence            58899999999987321111111 1    2344555655544322  12368999999999999999987642    21 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CCE-------------EEEEecCCCC---CC-CCCHHHHHHHHHhhhccCCceEEEE
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NME-------------QIGYYLDESK---QW-GLPISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~v~~~~~~---~~-~~d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                      ++.+|+....+|++....+... +-.             +..++.....   .+ .-|++.+++.++...  .++.+|++
T Consensus       133 ~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~--~~iaavi~  210 (428)
T PRK07986        133 PRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHR--HEIAAVIL  210 (428)
T ss_pred             CCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCC--CcEEEEEE
Confidence            2458999999999865433322 210             1122211000   01 125667787776421  25677777


Q ss_pred             eC-CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        165 IN-PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       165 ~~-p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      .. .+.-.|. ..+++.+++|.++|++||+++|+||++..|...|.  ......  .++.+     +++   +++|.+ |
T Consensus       211 Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~--~fa~~~--~gv~P-----Di~---t~gK~l-~  277 (428)
T PRK07986        211 EPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK--LFACEH--AGIAP-----DIL---CLGKAL-T  277 (428)
T ss_pred             echhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC--eeeecc--cCCCC-----CEE---Eechhh-h
Confidence            65 3565675 56779999999999999999999999988755432  212111  11211     144   579999 4


Q ss_pred             CCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        243 ECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       243 ~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                       .| +++|.++   .++++++.+..
T Consensus       278 -gG~~p~~av~---~~~~i~~~~~~  298 (428)
T PRK07986        278 -GGTMTLSATL---TTREVAETISN  298 (428)
T ss_pred             -CCcccCcchh---chHHHHHHhhc
Confidence             78 6999887   78999998864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.64  E-value=6.7e-14  Score=147.19  Aligned_cols=214  Identities=11%  Similarity=0.104  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++..........|.     .+....+++.|.+...  -..+.|++++++++|++.+++..+.-    +.+
T Consensus        67 ~p~v~~ai~~ql~~l~~~~~~~~~-----~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~  139 (445)
T PRK09221         67 RPEIVEAVARQAATLDYAPAFQMG-----HPLAFELAERLAELAP--GGLDHVFFTNSGSESVDTALKIALAYHRARGQG  139 (445)
T ss_pred             CHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            688999999998873211111121     2233445555543322  12358999999999999999876532    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCC---CCCCCC--------CHHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDE---SKQWGL--------PISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~---~~~~~~--------d~~~L~~~i~~~~~~~~  158 (509)
                      .+.+|+....+|++....+... |.            .+..+|...   ...+..        ..+.+++.++.... .+
T Consensus       140 ~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~  218 (445)
T PRK09221        140 TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDA-ST  218 (445)
T ss_pred             CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCC-Cc
Confidence            3558999999999875433222 10            122222211   000111        13566776754211 26


Q ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +.+|++.......|. ..+++.+++|.++|++||+++|+||++..|...|.  ......  .++.++        +.+++
T Consensus       219 iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~~~~~--~gv~PD--------i~~~g  286 (445)
T PRK09221        219 IAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--AFAAER--FGVTPD--------IITFA  286 (445)
T ss_pred             EEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch--hhHHHh--cCCCCC--------EEEec
Confidence            778888766777787 56788999999999999999999999988765442  222221  122221        33779


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      |.+ | .| +++|.++   .++++++.+.
T Consensus       287 K~l-~-gG~~Pi~av~---~~~~i~~~~~  310 (445)
T PRK09221        287 KGL-T-NGAIPMGAVI---ASDEIYDAFM  310 (445)
T ss_pred             ccc-c-cCcccceeeE---EcHHHHHhhc
Confidence            999 4 56 6899987   6888888775

>PLN02590 probable tyrosine decarboxylase

Probab=99.64  E-value=1.3e-12  Score=139.10  Aligned_cols=200  Identities=13%  Similarity=0.101  Sum_probs=142.5

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCC-----CCcEEEeCCHHHHHHHHHHHhhcC-----C--CCCCCeEEEcCCCChh
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPAD-----WQDVILSAGASDGIKSVLKLLIED-----V--DGKKPGVLIPIPQYPL  116 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~~-----g--d~~~~~Vlv~~p~y~~  116 (509)
                      |....+..++.+.+.+|+.+.+|.+-.     ...-++|+|+++++..++.+.++.     +  ...+-.|.+++-.|.+
T Consensus       162 ~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~S  241 (539)
T PLN02590        162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS  241 (539)
T ss_pred             cccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHH
Confidence            655666789999999999999986532     134677899999887776665431     1  0012245567888999


Q ss_pred             HHHHHHhcCC---EEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc
Q psy13922        117 YSASLAEFNM---EQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL  192 (509)
Q Consensus       117 ~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i  192 (509)
                      +..++..+|.   .++.||.+..+++.+|++.|++.|++..+. ..|-+|+.+...-.||.+   +.+++|+++|++||+
T Consensus       242 v~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai---Dpl~~Ia~i~~~~g~  318 (539)
T PLN02590        242 FRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV---DPLVPLGNIAKKYGI  318 (539)
T ss_pred             HHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc---CCHHHHHHHHHHhCC
Confidence            9999999988   588889886556799999999999875332 235556667888889998   669999999999999


Q ss_pred             EEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HHHHHH
Q psy13922        193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GVKAML  264 (509)
Q Consensus       193 ~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~~~~l  264 (509)
                      |+.+|.+|+.+..-    .+....+...+    +..+.|.+ +++|.+ + .....|.+++  .++ .+.+.+
T Consensus       319 WlHVDaA~GG~al~----~~~~r~~~~Gi----e~ADSit~-D~HK~l-~-~p~~cg~llv--r~~~~l~~a~  378 (539)
T PLN02590        319 WLHVDAAYAGNACI----CPEYRKFIDGI----ENADSFNM-NAHKWL-F-ANQTCSPLWV--KDRYSLIDAL  378 (539)
T ss_pred             eEEEecchhhhhhc----ChhhHHHhcCC----ccCCEEEE-Cchhhc-C-cCcCEEEEEe--cCHHHHHHHh
Confidence            99999999987632    11222222222    13457877 889998 3 6678887765  655 344444

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.64  E-value=4.7e-14  Score=147.50  Aligned_cols=208  Identities=11%  Similarity=0.005  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++...   ....+. .    +.+.++++.+.+..+  ...+.++++++++||+..+++..+.-..  |..
T Consensus        71 ~p~v~~ai~~q~~~~---~~~~~~-~----~~~~~la~~L~~~~~--~~~~~v~f~~SGsEA~e~AiklAr~~tg--r~~  138 (433)
T PRK00615         71 HPKICDAIQQGAERG---TSYGLT-S----EQEILFAEELFSYLG--LEDHKIRFVSSGTEATMTAVRLARGITG--RSI  138 (433)
T ss_pred             CHHHHHHHHHHHHhC---CCCCCC-C----HHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhC--CCE
Confidence            689999999999872   222122 2    234444555544322  1236899999999999999998765432  457


Q ss_pred             EEEcCCCChhHHHH---HHhcCCEE-EEEe----cCCCCC----C-CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922        107 VLIPIPQYPLYSAS---LAEFNMEQ-IGYY----LDESKQ----W-GLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus       107 Vlv~~p~y~~~~~~---~~~~g~~~-~~v~----~~~~~~----~-~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |+...-+|+++...   ....+... ..++    ..+...    + .-|++.+++.+....  .++.+|++.......|.
T Consensus       139 ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~aavI~Epv~~~~G~  216 (433)
T PRK00615        139 IIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLG--HRVAGVIFEPICANMGV  216 (433)
T ss_pred             EEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcC--CceEEEEECCCCCCCCc
Confidence            88889899986521   11111000 0000    000000    0 126888998886532  25677777655555676


Q ss_pred             -CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 -VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 -~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                       ..+++.+++|.++|++||+++|+||++.+| ..+.  .-....  .++.++     ++   +++|.+ | .|+++|+++
T Consensus       217 ~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~--~ga~~~--~gv~PD-----i~---~~gK~l-g-gG~p~~av~  281 (433)
T PRK00615        217 VLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ--GGAAAI--YHVKPD-----IT---VYGKIL-G-GGLPAAAVV  281 (433)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH--hHHHHh--cCCCCC-----eE---EEcccc-c-CCcceeeee
Confidence             556889999999999999999999999877 3331  111111  122221     33   579999 5 789999998


Q ss_pred             eecCCHHHHHHHHH
Q psy13922        253 VINLDPGVKAMLHK  266 (509)
Q Consensus       253 ~~~~~~~~~~~l~~  266 (509)
                         .++++++.+..
T Consensus       282 ---~~~~i~~~~~~  292 (433)
T PRK00615        282 ---AHKSIMDHLAP  292 (433)
T ss_pred             ---ecHHHHhhhcC
Confidence               79999998853

>PRK06917 hypothetical protein; Provisional

Probab=99.63  E-value=2.9e-13  Score=142.46  Aligned_cols=215  Identities=13%  Similarity=0.090  Sum_probs=132.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~  102 (509)
                      +|.|.+++.+++.+.   .+. +..... .+.+.++++.+.+...  -..+.+++++++++|++.+++..+.    .+..
T Consensus        49 hp~v~~Ai~~ql~~~---~~~-~~~~~~-~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t  121 (447)
T PRK06917         49 VKEIADAIKEQAEEV---SFV-YRSQFT-SEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQ  121 (447)
T ss_pred             CHHHHHHHHHHHhhC---cCc-cccccC-CHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCC
Confidence            689999999999883   222 111001 2344455555544322  1225799999999999999998743    1222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCCC--CCC--------CHHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESKQ--WGL--------PISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~--~~~--------d~~~L~~~i~~~~~~~~~  159 (509)
                      .|.+|+....+|+++...+... +.            .+..++......  +.-        +++.+++.++.... .++
T Consensus       122 ~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~-~~i  200 (447)
T PRK06917        122 GKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGA-EHI  200 (447)
T ss_pred             CCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCC-Cce
Confidence            3558999999999876544332 11            011121110000  011        23566766664211 257


Q ss_pred             eEEEEeCCC-CCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        160 RAIVIINPG-NPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       160 ~~ivi~~p~-NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      .+|++.... |-.|. ..+++.+++|.++|++||+++|.||++..|...+  .......  .++.++     +   .+++
T Consensus       201 AAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG--~~~a~~~--~gv~PD-----i---~~~g  268 (447)
T PRK06917        201 AAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG--AMFAMEH--WGVEPD-----I---MTLG  268 (447)
T ss_pred             EEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc--chhhHHh--cCCCCC-----E---EEee
Confidence            888886443 44454 6789999999999999999999999999875543  2222221  122222     3   3679


Q ss_pred             cccCCCCCC-eeEEEeeecCCHHHHHHHHH
Q psy13922        238 KGYMGECGL-RGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       238 K~~~G~~Gl-r~G~v~~~~~~~~~~~~l~~  266 (509)
                      |.+ | .|+ ++|.++   .++++++.+..
T Consensus       269 K~l-~-~G~~Pi~a~~---~~~~i~~~~~~  293 (447)
T PRK06917        269 KGL-G-AGYTPIAATV---VSDRVMEPILR  293 (447)
T ss_pred             ehh-c-cCCcceEEEE---EcHHHHHHHhc
Confidence            999 4 785 999998   68899888753

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.63  E-value=2.2e-13  Score=143.46  Aligned_cols=213  Identities=13%  Similarity=0.135  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~  102 (509)
                      +|.|.+++.+++.+........|.     .+....+++.+.+..+.  ..+.+++++++++|++.+++....    .+..
T Consensus        72 ~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~lAe~L~~~~p~--~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~  144 (453)
T PRK06943         72 NPRINAALKDQLDTLEHAMLAGCT-----HEPAIELAERLAALTGG--TLGHAFFASDGASAVEIALKMSFHAWRNRGRG  144 (453)
T ss_pred             CHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHHhCCC--CCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            689999999999873211111122     22344455555433221  125899999999999999998743    1222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCCC--CCC--------CCHHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDESK--QWG--------LPISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~--------~d~~~L~~~i~~~~~~~~~  159 (509)
                      .+.+|+....+|++....+... |.            .+..++.....  .+.        -+++.+++.++...  .++
T Consensus       145 ~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~i  222 (453)
T PRK06943        145 DKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERA--GKI  222 (453)
T ss_pred             CCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCC--Cce
Confidence            3458999999999876433221 11            11222221110  001        12466777775321  268


Q ss_pred             eEEEEeC-CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        160 RAIVIIN-PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       160 ~~ivi~~-p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      .+|++.. .+.-.|. ..+++.+++|.++|++||+++|.||++..|...+  .......+  ++.++     ++   +++
T Consensus       223 AAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG--~~fa~~~~--gv~PD-----iv---t~g  290 (453)
T PRK06943        223 AALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG--TFFACEQA--GVWPD-----FL---CLS  290 (453)
T ss_pred             EEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc--chhHHHhC--CCCCC-----eE---eee
Confidence            8888875 3666676 6789999999999999999999999999986654  22222221  22222     44   559


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      |.+ | .| +++|.++   .++++.+.+.
T Consensus       291 Kgl-~-gG~~Pi~av~---~~~ei~~~~~  314 (453)
T PRK06943        291 KGI-S-GGYLPLSLVL---SRDAIFAAFY  314 (453)
T ss_pred             hhh-c-cCcccceEEE---EcHHHHHhhc
Confidence            999 4 78 5999998   7889988775

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.63  E-value=1.7e-13  Score=144.62  Aligned_cols=208  Identities=13%  Similarity=0.088  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+.... ...|.     .+.+..+++.+.+..+  -..+.+++++++++|++.+++..+.-..  +..
T Consensus        89 ~p~v~~Ai~~ql~~~~~~-~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~tg--r~~  158 (459)
T PRK06082         89 HPHVIEKVKEQMAKLPFS-PRRFT-----NETAIECAEKLTEIAG--GELNRVLFAPGGTSAIGMALKLARHITG--NFK  158 (459)
T ss_pred             CHHHHHHHHHHHHhCCCc-cCccC-----CHHHHHHHHHHHHhCC--CCCCEEEECCCcHHHHHHHHHHHHHhcC--CCE
Confidence            688999999999873211 11122     2344455555544332  1236899999999999999988765322  347


Q ss_pred             EEEcCCCChhHHHHHHh-cCCE------------EEEEecCCCC--CCC-CC------HHHHHHHHHhhhccCCceEEEE
Q psy13922        107 VLIPIPQYPLYSASLAE-FNME------------QIGYYLDESK--QWG-LP------ISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~--~~~-~d------~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                      |+.....|++....... .|..            +..+|.....  .|. .|      ++.+++.++..   .++.+|++
T Consensus       159 ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~vAavIv  235 (459)
T PRK06082        159 VVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE---GGIGAFIA  235 (459)
T ss_pred             EEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC---CCEEEEEE
Confidence            88888889887543322 2211            1222211100  011 11      24566666531   25778887


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        165 INPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       165 ~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      ....+..+...+++.+++|.++|++||+++|.||++..|...|  .......  .++.++     ++   +++|.+ | .
T Consensus       236 EPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG--~~fa~e~--~gv~PD-----iv---~~gKgl-~-g  301 (459)
T PRK06082        236 EAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG--EWFTHQA--YGIEPD-----IL---CIGKGL-G-G  301 (459)
T ss_pred             CCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--hhhHhHh--hCCCCC-----EE---Eecccc-c-C
Confidence            6555655668889999999999999999999999999876554  1222221  122222     44   479999 4 6


Q ss_pred             C-CeeEEEeeecCCHHHHHHH
Q psy13922        245 G-LRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       245 G-lr~G~v~~~~~~~~~~~~l  264 (509)
                      | +++|.++   .++++.+.+
T Consensus       302 G~~P~~av~---~~~~i~~~~  319 (459)
T PRK06082        302 GLVPIAAMI---TKDKYNTAA  319 (459)
T ss_pred             CCCcceEEE---EcHHHHhhc
Confidence            7 5999998   577766543

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.63  E-value=1.8e-13  Score=153.57  Aligned_cols=192  Identities=15%  Similarity=0.175  Sum_probs=139.2

Q ss_pred             CcccCCCC---cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHH----HHHHHHHHHhhcC-CCCCCCeEEEcCCCChh
Q psy13922         45 SVGSYTDS---PGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS----DGIKSVLKLLIED-VDGKKPGVLIPIPQYPL  116 (509)
Q Consensus        45 ~~~~Y~~~---~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~----~al~~~~~~l~~~-gd~~~~~Vlv~~p~y~~  116 (509)
                      .++-|.|.   +|..++...+.+++.+..|    .++|.++++++    ++++++++.+.++ ||.+++.|+++...|..
T Consensus       553 ~~hp~~p~~~~~g~~~~~~~~r~~la~i~g----~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~s  628 (993)
T PLN02414        553 NIHPFAPVDQAQGYQEMFEDLGDLLCEITG----FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGT  628 (993)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCcc
Confidence            34445553   4666555555555555445    28999999999    9999999999876 77677789999999999


Q ss_pred             HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Q psy13922        117 YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA  196 (509)
Q Consensus       117 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~  196 (509)
                      ....+...|++++.++.++++  .+|++.|++.++++.+  ++++|++++|+|-+|...+   +++|+++|+++|+++++
T Consensus       629 n~a~a~~~G~~vv~v~~d~~G--~vDle~L~~~i~~~~~--~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~v  701 (993)
T PLN02414        629 NPASAAMCGMKIVVVGTDAKG--NINIEELRKAAEAHKD--NLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYM  701 (993)
T ss_pred             CHHHHHHCCCEEEEeccCCCC--CcCHHHHHHHHhccCC--CeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEE
Confidence            988888899999999997654  7899999999985211  6899999999999999855   99999999999999999


Q ss_pred             cccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC---CCeeEEEeeecCCHHHHHHH
Q psy13922        197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC---GLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       197 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~---Glr~G~v~~~~~~~~~~~~l  264 (509)
                      |.++..-...    .....    +++     .+++ .+|.+|+|.|..   |=.+|.+.   ..+.+...+
T Consensus       702 DgAq~~a~~~----l~~p~----~~G-----aD~~-~~s~HK~f~~P~G~GGPg~G~l~---~~~~L~p~l  755 (993)
T PLN02414        702 DGANMNAQVG----LTSPG----FIG-----ADVC-HLNLHKTFCIPHGGGGPGMGPIG---VKKHLAPFL  755 (993)
T ss_pred             EecCHHhccC----cCCcc----ccC-----CCEE-EecCCccCCcCcccCCCCeeeEE---EchhhcccC
Confidence            9998542211    11111    121     2255 448899774322   22377776   455544443

>PRK07480 putative aminotransferase; Validated

Probab=99.63  E-value=6.4e-14  Score=147.66  Aligned_cols=215  Identities=14%  Similarity=0.123  Sum_probs=130.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+....... +   ....+.+..+++.+.+..+  -..+.+++++++++|++.+++..+.-    |..
T Consensus        68 ~p~v~~Ai~~q~~~~~~~~~~-~---~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~  141 (456)
T PRK07480         68 RKELADAAARQMRELPYYNTF-F---KTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKP  141 (456)
T ss_pred             CHHHHHHHHHHHHhcCCcccc-c---ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            688999999999873211110 1   1113344455555544322  12358999999999999999887542    322


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CCE------------EEEEecCCC--CCCCCC--------HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NME------------QIGYYLDES--KQWGLP--------ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~~------------~~~v~~~~~--~~~~~d--------~~~L~~~i~~~~~~~~~  159 (509)
                      .+..|+...-+|++........ |..            +..++....  ..+..+        ++.+++.+.... ..++
T Consensus       142 ~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v  220 (456)
T PRK07480        142 QKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELG-ADNV  220 (456)
T ss_pred             CCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcC-CCcE
Confidence            3457888888999865433222 111            111111000  000011        245555443211 1267


Q ss_pred             eEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      .+|++...+.-.|. ..+++.+++|.++|++||+++|.||++..|...+  .......  .++.++     +   -+++|
T Consensus       221 AAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG--~~~a~~~--~gv~PD-----i---v~~gK  288 (456)
T PRK07480        221 AAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG--EWFGSQH--FGIKPD-----L---MTIAK  288 (456)
T ss_pred             EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc--chhhhhh--cCCCCC-----e---eeeeh
Confidence            88888656665676 6788899999999999999999999999886554  2222222  122222     3   36699


Q ss_pred             ccCCCCCC-eeEEEeeecCCHHHHHHHH
Q psy13922        239 GYMGECGL-RGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       239 ~~~G~~Gl-r~G~v~~~~~~~~~~~~l~  265 (509)
                      .+ | .|+ ++|.++   .++++++.+.
T Consensus       289 ~l-~-gG~~Pi~av~---~~~~i~~~~~  311 (456)
T PRK07480        289 GL-T-SGYIPMGAVG---VGDRVAEVLI  311 (456)
T ss_pred             hh-c-cCCccceEEE---EcHHHHHHHh
Confidence            99 4 685 899998   6889988873

>PRK07036 hypothetical protein; Provisional

Probab=99.63  E-value=1.5e-13  Score=145.23  Aligned_cols=216  Identities=14%  Similarity=0.122  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++....  ....+..  ...+.+..+++.+.+...  -..+.+++++++++|++.+++..+.-    |..
T Consensus        69 ~p~v~~Ai~~q~~~~~--~~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t  142 (466)
T PRK07036         69 REEMADAIADQARRLP--YYTPFGD--MTNAPAAELAAKLAELAP--GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRP  142 (466)
T ss_pred             CHHHHHHHHHHHHhCc--ccccccc--cCCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence            6889999999988721  1111210  113345556655544322  12358999999999999999886432    212


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCC--CCCCCC--------HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDES--KQWGLP--------ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~--~~~~~d--------~~~L~~~i~~~~~~~~~  159 (509)
                      .+.+|+...-+|++....+.....             .+..++....  ..++.+        ++.+++.+... ...++
T Consensus       143 ~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~i  221 (466)
T PRK07036        143 AKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL-GADNI  221 (466)
T ss_pred             CccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc-CCCce
Confidence            345899989999987644433211             1222222110  011111        23455555431 11268


Q ss_pred             eEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      .+|++...+.-.|. ..+++.+++|.++|++||+++|.||++..|...+  ........ ..+.++     +   -+++|
T Consensus       222 Aavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG--~~~~~~~~-~gv~PD-----i---vt~gK  290 (466)
T PRK07036        222 AAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG--HFFASEAV-FGIQPD-----I---ITFAK  290 (466)
T ss_pred             EEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc--hhhhhhhh-cCCCCC-----E---EEEcc
Confidence            88888766666676 6788999999999999999999999999886553  12222111 122222     3   36699


Q ss_pred             ccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        239 GYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       239 ~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      .+ | .| +++|.++   .++++++.+.
T Consensus       291 ~l-~-gG~~Pi~av~---~~~~i~~~~~  313 (466)
T PRK07036        291 GL-T-SGYQPLGAVI---ISERLLDVIS  313 (466)
T ss_pred             cc-c-cCccccEEEE---EcHHHHHHHh
Confidence            99 4 78 5999998   7899998875

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.63  E-value=2e-13  Score=140.46  Aligned_cols=166  Identities=15%  Similarity=0.132  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~  130 (509)
                      ..+|.+.++++.+        .+..+++++++.|+.+++.++.++||    +|+++.+.|.+..    ..+...|++++.
T Consensus        66 ~~~lE~~la~leg--------~~~av~~sSG~aAi~~al~all~~GD----~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~f  133 (384)
T PRK06434         66 VQAFEEKYAVLEN--------AEHALSFSSGMGAITSAILSLIKKGK----RILSISDLYGQTFYFFNKVLKTLGIHVDY  133 (384)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCC----EEEEecCccchHHHHHHHHHHhcCcEEEE
Confidence            3667788888773        35678888888999999999999998    9999887655543    566778999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++.++...+.++         ..    ++++|++..|+||++.+.+   +++|+++|++++  +++|.++....     .
T Consensus       134 vd~~~~~~~~l~---------~~----~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~-----~  190 (384)
T PRK06434        134 IDTDRLNSLDFD---------PS----NYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY-----N  190 (384)
T ss_pred             ECCCChhheeec---------CC----CeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc-----c
Confidence            987643223222         21    6899999999999998855   999999999998  45699974321     1


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhh
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                      ..++.     .+     . -++++|.+|.++|..+.-.|.++  +.++++.++++...
T Consensus       191 ~~pl~-----~g-----a-Divv~S~tK~i~G~~d~~gG~vv--~~~~~~~~~~~~~~  235 (384)
T PRK06434        191 QNPLD-----LG-----A-DVVIHSATKYISGHSDVVMGVAG--TNNKSIFNNLVERR  235 (384)
T ss_pred             CCchh-----cC-----C-CEEEeecccccCCCCCceEEEEe--cCcHHHHHHHHHHH
Confidence            12221     11     1 35566899999643335566664  36777777776544

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.63  E-value=1.3e-13  Score=141.20  Aligned_cols=337  Identities=15%  Similarity=0.103  Sum_probs=196.3

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchH---HHHHHHHHHHhhhcCCCCCCCcEEE-eCCHHHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIE---IIRRHVAQYISRRDGQPADWQDVIL-SAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~---~lr~~va~~l~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~   97 (509)
                      |+..+|+.|++++.+.+.+......+.+....-.+   ++.+.+.+.+.+.++.+ +..+|++ +++++.+++.++..+.
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl~   88 (360)
T PRK05355         10 GPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNLL   88 (360)
T ss_pred             CCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhcC
Confidence            56668999999999888653212222222221112   34444444444444521 2234555 4777899999999999


Q ss_pred             cCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHH-HHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELER-SITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~-~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      .+|+    ++++..-...+  +.+.++..|.. ..+..++..+ ..+..++++ .+++     ++++|.+++..+.||+.
T Consensus        89 ~~g~----~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g-~~~~~~~~~~~l~~-----~~~~V~~th~eTstGv~  157 (360)
T PRK05355         89 GGGK----KADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDG-FTYIPPLDEWQLSD-----DAAYVHYTSNETIDGTE  157 (360)
T ss_pred             CCCC----eEEEEECCHHHHHHHHHHHHhCCc-eEEecccccC-CCCCCChhhccCCC-----CCCEEEEccCCCcceEe
Confidence            9887    66655444443  46778888865 4444442112 334444444 5654     68999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      .+  ++.+|      +|+++|+|.+.+...     ....+..+           +++ +.|..|.+ |++|+  |.+.  
T Consensus       158 ~~--~i~~i------~g~l~vVDavss~g~-----~~idv~~~-----------d~~-~~ssqK~l-gP~Gl--g~l~--  207 (360)
T PRK05355        158 FH--ELPDT------GDVPLVADMSSDILS-----RPIDVSKF-----------GLI-YAGAQKNI-GPAGL--TIVI--  207 (360)
T ss_pred             cC--ccccc------CCCcEEEEcCccccC-----ccCCHHHc-----------cEE-EEeccccc-cCCce--EEEE--
Confidence            84  35555      899999999987733     22333321           244 45779999 88874  5555  


Q ss_pred             cCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        255 NLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                       .+++..+++....     +...   -.             .......--.+++......++..+++        |-...
T Consensus       208 -~s~~~l~~~~~~~-----~~~~---~~-------------~~~~~~~~~~~Tp~~~~i~aL~~aL~--------~i~~~  257 (360)
T PRK05355        208 -VREDLLGRALPSI-----PSML---DY-------------KTHADNDSMYNTPPTFAIYLAGLVFK--------WLKEQ  257 (360)
T ss_pred             -ECHHHHhhcccCC-----ChHH---HH-------------HHHHhcCCccCCCcHHHHHHHHHHHH--------HHHHc
Confidence             4777777654310     0000   00             00000000012333335566665544        21111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC---CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSIEGMSCNPV---QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ..++.+.++.+++.+++.+.|++++.+....+   ..+..+.+.++  ..          ....+ ....+.++||.+.+
T Consensus       258 gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~--~~----------~~~~~-~~~~~~~~Gi~~~~  324 (360)
T PRK05355        258 GGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLA--DE----------ELDKK-FLAEAKAAGLVGLK  324 (360)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcC--Ch----------HHHHH-HHHHHHHCCCcccC
Confidence            02788889999999999999999853222211   23233333333  21          01122 23455668888755


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEK  489 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~  489 (509)
                      |..  .                                                .+          .||+|+.  ++.++
T Consensus       325 ~~~--~------------------------------------------------~g----------~vRiS~~~~nt~ee  344 (360)
T PRK05355        325 GHR--S------------------------------------------------VG----------GMRASIYNAMPLEG  344 (360)
T ss_pred             CCC--c------------------------------------------------cC----------cEEEECCCCCCHHH
Confidence            441  1                                                22          7999988  88999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13922        490 LKAMLEKFREFHEE  503 (509)
Q Consensus       490 i~~~~~~l~~~~~~  503 (509)
                      |+..++.|++++++
T Consensus       345 i~~l~~~l~~~~~~  358 (360)
T PRK05355        345 VQALVDFMKEFERR  358 (360)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987754

>PRK06105 aminotransferase; Provisional

Probab=99.63  E-value=6.5e-14  Score=147.90  Aligned_cols=215  Identities=13%  Similarity=0.049  Sum_probs=132.9

Q ss_pred             CHHHHHHHHHHHhcccCC-CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQ-SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~-~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd  101 (509)
                      +|.|.+++.+++.+.... ....|.     .+.+.++++.+.+...  -..+.+++++++++|++.+++..+..    +.
T Consensus        66 ~p~i~~Ai~~q~~~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve~AlKlar~~~~~~g~  138 (460)
T PRK06105         66 EQRLVEAAARQMKKLPFYHTFSHKS-----HGPVIDLAEKLVAMAP--VPMSKVFFTNSGSEANDTVVKLVWYYNNALGR  138 (460)
T ss_pred             CHHHHHHHHHHHHhCCCeecccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            689999999999873211 111121     2334445555543322  12358999999999999999986421    22


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhc-CCE------------EEEEecCCCCCCC-----------CCHHHHHHHHHhhhccC
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEF-NME------------QIGYYLDESKQWG-----------LPISELERSITEARKHC  157 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~-g~~------------~~~v~~~~~~~~~-----------~d~~~L~~~i~~~~~~~  157 (509)
                      ..+..|+...-.|++........ +..            +..++......+.           ...+.+++.+.... ..
T Consensus       139 t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~-~~  217 (460)
T PRK06105        139 PEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEG-PD  217 (460)
T ss_pred             CCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcC-CC
Confidence            23457898888999876443221 111            1111111100000           01356777764321 12


Q ss_pred             CceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        158 NPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                      ++.+|++...+.-.|. ..+++.+++|.++|++||+++|.||++..|...|  .......  .++.++        +.++
T Consensus       218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG--~~f~~~~--~~v~PD--------i~~~  285 (460)
T PRK06105        218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG--NMFGCET--FGIKPD--------ILVM  285 (460)
T ss_pred             ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc--hhhhHHh--cCCCCC--------eeee
Confidence            6788888656666676 5789999999999999999999999999886554  2222222  122222        3367


Q ss_pred             ccccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        237 SKGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       237 SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      +|.+ | .| +++|.++   .++++++.+..
T Consensus       286 gK~l-g-gG~~P~~av~---~~~~i~~~~~~  311 (460)
T PRK06105        286 SKQL-S-SSYQPLSAVL---MNEKVYDPIAD  311 (460)
T ss_pred             eccc-c-cCcccceEEE---EcHHHHHHHhc
Confidence            9999 4 66 6999998   78899888764

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.62  E-value=3.3e-14  Score=145.30  Aligned_cols=197  Identities=12%  Similarity=0.133  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.+.+++.+++++.... ...|. .....++.+.++++.    +    .+.+++++++++|++.+++......  .++.
T Consensus        42 ~p~v~~ai~~ql~~~~~~-~~~~~-~~~~~~la~~l~~~~----~----~~~v~~~~SGseA~e~Alklar~~~--gr~~  109 (364)
T PRK04013         42 HPEWVEEMSEQLEKLVVA-GPMFE-HEEKEEMLEELSKWV----N----YEYVYMGNSGTEAVEAALKFARLYT--GRKE  109 (364)
T ss_pred             CHHHHHHHHHHHHhcCCc-cCCcC-CHHHHHHHHHHHhhc----C----CCEEEEeCchHHHHHHHHHHHHHHh--CCCE
Confidence            578889999999873211 11233 222244555555443    2    3589999999999999999886532  1358


Q ss_pred             EEEcCCCChhHHHHHHhc-C-------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-CCCH
Q psy13922        107 VLIPIPQYPLYSASLAEF-N-------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ-VLTK  177 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g-------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-~~s~  177 (509)
                      |+....+|++....+... +       .......... -. ..|++.+++.+.+     ++++|++...+...|. ..++
T Consensus       110 Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~-~~-~~d~~~l~~~i~~-----~~aAvivEpi~g~gG~~~~~~  182 (364)
T PRK04013        110 IIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKH-IP-FNDVEAAKEAITK-----ETAAVIFEPIQGEGGIVPAKE  182 (364)
T ss_pred             EEEECCccccCchhhccCCCCcccccCCCCCCCCcEE-ec-CCCHHHHHHHhcC-----CcEEEEEcCCcCCCCCcCCCH
Confidence            999999999876444331 1       1100000000 01 1267888888865     7899988766666665 5678


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +.+++|.++|++||+++|.||++..+ ..|  .+.....  .++.++     ++   +++|.+ | .|+++|.++   .+
T Consensus       183 ~yl~~lr~lc~~~gillI~DEv~tG~-RtG--~~~a~~~--~gv~PD-----iv---~~gK~l-g-gG~P~~a~~---~~  244 (364)
T PRK04013        183 EFVKTLRDLTEDVGALLIADEVQSGL-RTG--KFLAIEH--YKVEPD-----IV---TMGKGI-G-NGVPVSLTL---TN  244 (364)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhcC-CCC--chhHHHh--cCCCCC-----EE---Eecccc-c-CCceeEEEE---ec
Confidence            89999999999999999999999988 543  2222221  122222     33   669999 5 789999987   45


Q ss_pred             HHH
Q psy13922        258 PGV  260 (509)
Q Consensus       258 ~~~  260 (509)
                      .++
T Consensus       245 ~~~  247 (364)
T PRK04013        245 FDV  247 (364)
T ss_pred             ccc
Confidence            454

>PLN03032 serine decarboxylase; Provisional

Probab=99.62  E-value=5.1e-13  Score=136.56  Aligned_cols=220  Identities=13%  Similarity=0.055  Sum_probs=148.5

Q ss_pred             CCCCCC---CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE--EEeCCHHHHHHHHHH
Q psy13922         20 LFDDPR---FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV--ILSAGASDGIKSVLK   94 (509)
Q Consensus        20 ~~~~~~---~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i--~~t~G~~~al~~~~~   94 (509)
                      .+|-|.   |-..+++++...+....++....++......++.+.+.+++.+.+|  .+++++  ++|+|+|+++...+.
T Consensus        26 ~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~  103 (374)
T PLN03032         26 HFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGIL  103 (374)
T ss_pred             ccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHH
Confidence            444443   5556788887777653222222122112336666777777766666  456666  999999999998888


Q ss_pred             HhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         95 LLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        95 ~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ..++...  +..|+++.-.|.+...+++.+|.++..||.+++  ..+|++.|++.+++..  .++.+|+++..+|++|.+
T Consensus       104 ~ar~~~~--~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~--g~id~~~L~~~i~~~~--~~~~lvv~tagtt~tG~i  177 (374)
T PLN03032        104 VGREVFP--DGILYASRESHYSVFKAARMYRMEAVKVPTLPS--GEIDYDDLERALAKNR--DKPAILNVNIGTTVKGAV  177 (374)
T ss_pred             HHHHhCC--CcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCC--CcCcHHHHHHHHHHcC--CCCEEEEEEecCcCCccC
Confidence            7653211  127999999999999999999999999998765  3899999999998621  136778888899999999


Q ss_pred             CCHHHHHHHHHHHHHCC-----cEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        175 LTKENIQDIIKFAHREK-----LFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~-----i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      -|   +++|+++|+++|     +++++|.+|+.+...-... .+...+.       ...+.+++ |.+|.. | .-..+|
T Consensus       178 dp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-~~~~~~~-------~~vDSis~-s~HK~~-g-~P~g~G  243 (374)
T PLN03032        178 DD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-APEVTFR-------KPIGSVSV-SGHKFL-G-CPMPCG  243 (374)
T ss_pred             CC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC-CcccCCC-------cCCcEEEE-Cccccc-C-CCcCeE
Confidence            66   899999999996     5899999997753210000 0000100       12447777 889998 6 334578


Q ss_pred             EEeeecCCHHHHHHH
Q psy13922        250 YSEVINLDPGVKAML  264 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l  264 (509)
                      .+++  . .+..+.+
T Consensus       244 ~ll~--r-~~~~~~~  255 (374)
T PLN03032        244 VALT--R-KKHVKAL  255 (374)
T ss_pred             EEEE--E-chhhHhh
Confidence            7774  3 3444444

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.62  E-value=2.4e-13  Score=143.48  Aligned_cols=230  Identities=13%  Similarity=0.095  Sum_probs=133.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEe-CCHHHHHHHHHHHhhcCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILS-AGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t-~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      +|.|.+++.+++.+........|.     .+.+..+++.+.......... +.++++ ++++||...+++..+....  +
T Consensus        81 ~p~v~~Ai~~ql~~~~~~~~~~~~-----~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tg--r  153 (464)
T PRK06938         81 HPVVIEAIQQVLADELPLHTLDLT-----TPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATG--R  153 (464)
T ss_pred             CHHHHHHHHHHHHhhhcccccccC-----CHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhC--C
Confidence            688999999998751111111121     233444444443322211111 356665 6889999999998765422  4


Q ss_pred             CeEEEcCCCChhHHHHHHhc-CC------------EEEEEecCCC--CCCC--------CCHHHHHHHHHhhhcc-CCce
Q psy13922        105 PGVLIPIPQYPLYSASLAEF-NM------------EQIGYYLDES--KQWG--------LPISELERSITEARKH-CNPR  160 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~--------~d~~~L~~~i~~~~~~-~~~~  160 (509)
                      +.|+...-+|++....+... |.            .+..+|....  ..+.        .+++.+++.+.+...+ .++.
T Consensus       154 ~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iA  233 (464)
T PRK06938        154 STVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPA  233 (464)
T ss_pred             CeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceE
Confidence            58999899999876544332 10            1222222111  0011        1256677777642111 2578


Q ss_pred             EEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        161 AIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       161 ~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +|++...+.-.|. ..+++.++++.++|++||+++|.||++.+|...|  .......  .++.++     ++   +++|.
T Consensus       234 AvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG--~~~a~e~--~gv~PD-----iv---~~gKg  301 (464)
T PRK06938        234 AVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG--KMFAFEH--AGIIPD-----VV---VLSKA  301 (464)
T ss_pred             EEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--HHHHHHh--cCCCCC-----EE---Eeecc
Confidence            8888655555576 5679999999999999999999999999986554  2222221  223332     44   56999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHh-hhcccCcchhhhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKS-ISAMLCPTVLALVS  281 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~  281 (509)
                      + | .|+++|.++   .++++ +.+... ...+.+.+.+++++
T Consensus       302 l-g-gG~PlsAv~---~~~~~-~~~~~~~~~~T~~gnpla~Aa  338 (464)
T PRK06938        302 I-G-GSLPLAVVV---YREWL-DTWQPGAHAGTFRGNQMAMAA  338 (464)
T ss_pred             c-c-CCCceEEEe---ehhHh-hccCCCCCCCCCCcCHHHHHH
Confidence            9 5 799999998   55554 444221 11233445553333

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.62  E-value=3.9e-13  Score=125.59  Aligned_cols=310  Identities=13%  Similarity=0.181  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE  135 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~  135 (509)
                      ..+.+.+++|++        -+.+-+|+|+.++-..++.+++++||    .|++....|....-+++++|.++..||...
T Consensus        64 ~~F~~dlaeFlg--------~D~~R~t~GARe~KfavMhal~~~gd----~vV~D~~aHYttyvAAEragl~v~eVp~tg  131 (382)
T COG1103          64 KDFLEDLAEFLG--------MDEVRVTAGAREAKFAVMHALCKEGD----WVVVDSLAHYTTYVAAERAGLNVAEVPNTG  131 (382)
T ss_pred             HHHHHHHHHHhC--------CceeeecccchhhHHHHHHHhccCCC----EEEEcCcchHHHHHHHHhcCCeEEecCCCC
Confidence            567788888883        56899999999999999999999999    999999999988889999999999999877


Q ss_pred             CCCCCCCHHHHHHHHHhhhcc--CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcccc
Q psy13922        136 SKQWGLPISELERSITEARKH--CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS  213 (509)
Q Consensus       136 ~~~~~~d~~~L~~~i~~~~~~--~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~  213 (509)
                      ...|.++++...+.|++..+.  ..+.+.++++|...-|..   .+-+.++++|++++++++...+|.-..+     ..+
T Consensus       132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt~Grm-----pvs  203 (382)
T COG1103         132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYTVGRM-----PVS  203 (382)
T ss_pred             CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hhhHHHHHHHHHcCCceEeecceeeccc-----ccc
Confidence            778899999999999876554  357777889888777877   4589999999999999999999986332     333


Q ss_pred             HHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-c--cCcchhhhhccccccCCCC
Q psy13922        214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-M--LCPTVLALVSLPQLFDDPR  290 (509)
Q Consensus       214 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~  290 (509)
                      ..++..         ++| ++|-+|+++  +.-++|.+.   -..++.+.+-+.... +  -.+..+             
T Consensus       204 ~ke~g~---------DFi-VgSGHKsmA--As~PiGvl~---~~eE~ae~V~r~Sg~~~~~KEvell-------------  255 (382)
T COG1103         204 GKEIGA---------DFI-VGSGHKSMA--ASAPIGVLA---MSEEWAEIVLRRSGRAFPKKEVELL-------------  255 (382)
T ss_pred             ccccCC---------CEE-EecCccchh--ccCCeeEEe---ehhHHHHHHHhhcccccccceeeee-------------
Confidence            333221         244 679999996  566999997   588888877554321 1  112222             


Q ss_pred             CchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec--cCCc
Q psy13922        291 FPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN--PVQG  368 (509)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~  368 (509)
                                    +|+...+....+.+.          |....++..+.-+.+ +....+.+.++++.|+.-.  .|..
T Consensus       256 --------------GCT~rGapivTlmAS----------fP~V~eRVkrWdeEv-~kaR~fv~elEkigg~~qlG~rPk~  310 (382)
T COG1103         256 --------------GCTVRGAPIVTLMAS----------FPHVVERVKRWDEEV-EKARWFVAELEKIGGVKQLGERPKN  310 (382)
T ss_pred             --------------cccccCchHHHHHhc----------CHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHhCCCCcc
Confidence                          222222222222222          344444444333333 3456778888888556543  3444


Q ss_pred             eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCC
Q psy13922        369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCP  448 (509)
Q Consensus       369 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  448 (509)
                      .-.+.  |..|.  +.++.+..... --|+.+-|+++||.-.-                                     
T Consensus       311 HdLm~--Fetp~--f~eIakk~~r~-gyFlY~ELK~RgI~GI~-------------------------------------  348 (382)
T COG1103         311 HDLMK--FETPV--FHEIAKKHKRK-GYFLYEELKKRGIHGIQ-------------------------------------  348 (382)
T ss_pred             cceee--ecCch--HHHHHHhCcCC-ceeeHHHHHhcCccccc-------------------------------------
Confidence            44444  33332  22222222111 11245667777774220                                     


Q ss_pred             chhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHH
Q psy13922        449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~  504 (509)
                                       +|.       +.+|.+|.. .+.++++-.++.++++++++
T Consensus       349 -----------------~G~-------Tk~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         349 -----------------PGQ-------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             -----------------cCc-------eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence                             221       338999987 89999999999999998764

>PRK06062 hypothetical protein; Provisional

Probab=99.62  E-value=2.3e-13  Score=143.44  Aligned_cols=211  Identities=17%  Similarity=0.210  Sum_probs=133.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+..... ..|.     .+.+..+++.+.+...  -..+.|++++++++|.+.+++..+....  |.+
T Consensus        71 ~p~v~~Ai~~q~~~~~~~~-~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~tg--r~~  140 (451)
T PRK06062         71 HPKVVAAIQEQAARLCTVA-PAHA-----NDARSEAARLIAERAP--GDLSKVFFTNGGADANEHAVRMARLHTG--RPK  140 (451)
T ss_pred             CHHHHHHHHHHHHhcCCcC-CccC-----CHHHHHHHHHHHHhCC--CCCCEEEEcCChHHHHHHHHHHHHHhhC--Cce
Confidence            5889999999998722111 1122     3344555555544322  1236899999999999999998765432  458


Q ss_pred             EEEcCCCChhHHHHHHhc-CCE-----------EEEEecCCC--CCCC--CC-------HHHHHHHHHhhhccCCceEEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-NME-----------QIGYYLDES--KQWG--LP-------ISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~~-----------~~~v~~~~~--~~~~--~d-------~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      |+...-.|++....+... +..           +..++....  ..|.  -|       ++.+++.++... ..++.+|+
T Consensus       141 ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~~~iAavi  219 (451)
T PRK06062        141 VLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEG-PSTIAAIL  219 (451)
T ss_pred             EEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcC-CCceEEEE
Confidence            999999999876544332 111           111211110  0110  12       567777775321 12678888


Q ss_pred             EeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      +.....-.|. ..+++.+++|.++|++||+++|.||++..|...+  .......  ..+.++        +.+++|.+ |
T Consensus       220 iEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG--~~~a~~~--~gv~PD--------i~t~gK~l-g  286 (451)
T PRK06062        220 LESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG--KWFAIEH--FGVVPD--------LITFAKGV-N  286 (451)
T ss_pred             EccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc--HHHHHHh--cCCCCC--------eeeechhh-h
Confidence            8655555676 4688999999999999999999999999875443  1111111  122222        33679999 4


Q ss_pred             CCCC-eeEEEeeecCCHHHHHHHH
Q psy13922        243 ECGL-RGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       243 ~~Gl-r~G~v~~~~~~~~~~~~l~  265 (509)
                       .|+ ++|.++   .++++++.+.
T Consensus       287 -gG~~Pigav~---~~~~i~~~~~  306 (451)
T PRK06062        287 -SGYVPLGGVA---ISEAIAATFA  306 (451)
T ss_pred             -cCCcCcEEEE---EcHHHHHHhc
Confidence             684 999998   6788988875

>PRK07481 hypothetical protein; Provisional

Probab=99.61  E-value=4e-13  Score=141.55  Aligned_cols=217  Identities=15%  Similarity=0.104  Sum_probs=131.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+...  ...+..  ...+.+..+++.+.+..+. -..+.++++++++||++.+++..+.-    |.+
T Consensus        60 ~p~v~~Ai~~ql~~~~~--~~~~~~--~~~~~~~~lae~L~~~~~~-~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~  134 (449)
T PRK07481         60 REEVKEAIVRQLDELEY--YSTFDG--TTHPRAIELSYELIDMFAP-EGMRRVFFSSGGSDSVETALKLARQYWKVRGQP  134 (449)
T ss_pred             CHHHHHHHHHHHHhccc--eecccc--cCCHHHHHHHHHHHHhcCC-CCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCC
Confidence            58899999999987221  111100  0123445555555443221 12358999999999999999987542    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCC--CCCC-CCHHHH--------HHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDES--KQWG-LPISEL--------ERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~--~~~~-~d~~~L--------~~~i~~~~~~~~  158 (509)
                      .+.+|+...-+|++....+...+.             .+..++....  ..|. .|.+.+        ++.+.... ..+
T Consensus       135 ~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~-~~~  213 (449)
T PRK07481        135 ERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQG-PDT  213 (449)
T ss_pred             CCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            345899999999987643332211             1122221100  0111 144443        33333111 126


Q ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +.+|++...+.-.|. ..+++.+++|.++|++||+++|.||++.+|...+.  ......  .++.++     ++   +++
T Consensus       214 iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~~--~gv~PD-----iv---~~g  281 (449)
T PRK07481        214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS--WFGSRG--WGVKPD-----IM---CLA  281 (449)
T ss_pred             EEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch--hhHhhh--cCCCCC-----EE---EEe
Confidence            888888766666676 67889999999999999999999999999865541  212111  122222     44   569


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |.+ | .| +++|.++   .++++++.+..
T Consensus       282 Kgl-~-gG~~Pi~av~---~~~~i~~~~~~  306 (449)
T PRK07481        282 KGI-T-SGYVPLGATM---VNARIADAFEA  306 (449)
T ss_pred             ecc-c-CCCcCceEEE---EcHHHHHHHhc
Confidence            999 4 68 5999998   68889888753

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.61  E-value=1.3e-12  Score=136.59  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~v  131 (509)
                      ..+++.+++++    |   ....|++++|+ +|+.+++..+.++||    +||++...|.+..    ..++..|+++..+
T Consensus        72 ~~le~~la~l~----g---~~~~v~fsSG~-~Ai~~al~~ll~~Gd----~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~v  139 (437)
T PRK05613         72 EALENRIASLE----G---GVHAVAFASGQ-AAETAAILNLAGAGD----HIVTSPRLYGGTETLFLVTLNRLGIEVTFV  139 (437)
T ss_pred             HHHHHHHHHHh----C---CCeEEEeCCHH-HHHHHHHHHhcCCCC----EEEECCCccHHHHHHHHHHHHhcCeEEEEE
Confidence            66778888777    3   12345555555 888888888888888    9999999998864    4457789999998


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      + ++.     |++.+++.+++     ++++|++.++.||+|.+.+   +++|+++|+++|+++|+|.++.....     .
T Consensus       140 d-~~~-----d~e~l~~~l~~-----~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~-----~  200 (437)
T PRK05613        140 E-NPD-----DPESWQAAVQP-----NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL-----V  200 (437)
T ss_pred             C-CCC-----CHHHHHHhCCc-----cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc-----c
Confidence            7 322     78999999887     7999999999999998877   99999999999999999999865221     1


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+. .    .+.      -++++|++|.++ -.|..+|.++
T Consensus       201 ~p~-~----~Ga------Divv~S~~K~l~-G~gd~~gG~v  229 (437)
T PRK05613        201 RPL-E----LGA------DVVVASLTKFYT-GNGSGLGGVL  229 (437)
T ss_pred             ChH-H----hCC------CEEEeeccceec-CCCcceeEEE
Confidence            121 1    121      244669999994 3565555554

>KOG1359|consensus

Probab=99.61  E-value=2.2e-13  Score=128.56  Aligned_cols=214  Identities=17%  Similarity=0.188  Sum_probs=150.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|+++++-.++++....+..+ -.--.|.....+.+...+.++++    .|+.++.+.+..|...++.++..|.|    .
T Consensus        83 hPeii~a~~~aleeyGaGlss-vrfIcGtq~iHk~LE~kiAqfh~----rED~ilypscfdANag~feail~ped----A  153 (417)
T KOG1359|consen   83 HPEIINAGQKALEEYGAGLSS-VRFICGTQDIHKLLESKIAQFHG----REDTILYPSCFDANAGAFEAILTPED----A  153 (417)
T ss_pred             ChHHHHHHHHHHHHhCCCccc-eeEEecchHHHHHHHHHHHHHhC----CCceEEeccccccchHHHHHhcChhh----h
Confidence            578999999999984433222 22234666655555555555544    56777788888999999999999887    8


Q ss_pred             EEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy13922        107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF  186 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i  186 (509)
                      |+-...+|.+..+.++.+.    .     .  -.+|+-.++..+.+..+. +.++|+....-...|.+.|   +++|..+
T Consensus       154 vfSDeLNhASIIdGirLck----r-----y--~h~dv~~l~~~l~~a~k~-r~klv~TDg~FSMDGdiaP---l~ei~~L  218 (417)
T KOG1359|consen  154 VFSDELNHASIIDGIRLCK----R-----Y--RHVDVFDLEHCLISACKM-RLKLVVTDGVFSMDGDIAP---LEEISQL  218 (417)
T ss_pred             hhccccccchhhhhhHHHh----h-----h--ccchhHHHHHHHHHhhhh-eEEEEEecceeccCCCccc---HHHHHHH
Confidence            8888889988887766554    1     1  145677777666543332 6788887788888999988   8889999


Q ss_pred             HHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        187 AHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       187 a~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      +++||.++++||++..+.++..  .....+.+.-++.    + .+..++++|.+ |  |.-.||..   ++..+++.+++
T Consensus       219 a~kYgaLlfiDecHaTgf~G~t--GrGt~E~~~vm~~----v-diinsTLgKAl-G--ga~GGytt---gp~~li~llrq  285 (417)
T KOG1359|consen  219 AKKYGALLFIDECHATGFFGET--GRGTAEEFGVMGD----V-DIINSTLGKAL-G--GASGGYTT---GPKPLISLLRQ  285 (417)
T ss_pred             HHhcCcEEEEeecccceeecCC--CCChHHHhCCCCc----c-eehhhhhhhhh-c--CCCCCCcc---CChhHHHHHHh
Confidence            9999999999999998887542  3334444332222    2 35567999998 4  55669997   89999999887


Q ss_pred             hhhcccCcchh
Q psy13922        267 SISAMLCPTVL  277 (509)
Q Consensus       267 ~~~~~~~~~~~  277 (509)
                      -...+..++++
T Consensus       286 r~RpylFSnsl  296 (417)
T KOG1359|consen  286 RSRPYLFSNSL  296 (417)
T ss_pred             cCCceeecCCC
Confidence            55544444433

>KOG1360|consensus

Probab=99.61  E-value=4.1e-13  Score=131.46  Aligned_cols=297  Identities=12%  Similarity=0.116  Sum_probs=194.9

Q ss_pred             CHHHHHHHHHHHhcccCC---CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQ---SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~---~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd  101 (509)
                      .|.|++++++.+...+.+   +-+--+.+.-...|.+.+|++..        .+..++.+++.-|....+-.|.+  ||-
T Consensus       187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--------K~aALlFsSCfVANDstLftLak~lpgc  258 (570)
T KOG1360|consen  187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--------KEAALLFSSCFVANDSTLFTLAKKLPGC  258 (570)
T ss_pred             ChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--------CcceeeeeeeeeccchHHHHHHHHCCCc
Confidence            478999999999985422   22222334444568888888762        45555556666666666656543  554


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|.-..-+|.+....++..+++=..+..       -|++.|++++++..+. .+|+|-+...+..+|.+-|   ++
T Consensus       259 ----ei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~s-vPKivAFEtVhSM~Gavcp---le  323 (570)
T KOG1360|consen  259 ----EIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKS-VPKIVAFETVHSMDGAVCP---LE  323 (570)
T ss_pred             ----EEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCC-CCceEEEeeeeccCCCcCC---HH
Confidence                6666677888888888877765444432       2899999999875332 6788889999999999988   99


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|++++++||.+-++||++....|++...  .+.+-    +..-..++ |..+++.|.| |.-|   ||++   +...++
T Consensus       324 elcDvah~yGAiTFlDEVHAVGlYG~rGa--Gvger----dGvm~kvD-iIsGTLgKaf-GcVG---GYIA---at~~Lv  389 (570)
T KOG1360|consen  324 ELCDVAHKYGAITFLDEVHAVGLYGPRGA--GVGER----DGVMHKVD-IISGTLGKAF-GCVG---GYIA---ATRKLV  389 (570)
T ss_pred             HHHHHHHHhCceeeeehhhhhccccCCCC--Ccccc----CCcchhhh-hcccchhhhc-cccc---ceeh---hhhhHH
Confidence            99999999999999999998887764211  11110    00001222 4478999999 7655   9998   899999


Q ss_pred             HHHHHhhhccc----CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        262 AMLHKSISAML----CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       262 ~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +.++.+..++.    -|++.-..                               +..+...+..             .+-
T Consensus       390 DmiRSyAaGFIFTTSLPP~vl~G-------------------------------AleaVr~lk~-------------~eg  425 (570)
T KOG1360|consen  390 DMIRSYAAGFIFTTSLPPMVLAG-------------------------------ALEAVRILKS-------------EEG  425 (570)
T ss_pred             HHHHHhcCceEEecCCChHHHHh-------------------------------HHHHHHHHhh-------------hhh
Confidence            99998876432    23332000                               2222222211             113


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +.+|..-+++..++.+.|.++ |+.+.+..+.+.-. .+..+.            -+.+....++.++||++-.-.+...
T Consensus       426 ~~lR~~hqrnv~~~kq~l~~~-GiPVi~~pSHIiPv-~vgda~------------l~~~~sd~Li~~h~iYvQaINyPTV  491 (570)
T KOG1360|consen  426 RVLRRQHQRNVKYVKQLLMEL-GIPVIPNPSHIIPV-RVGDAA------------LAKQASDILISKHNIYVQAINYPTV  491 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCcccCCCcceeee-eccCHH------------HHHHHHHHHHHhcCeEEEeccCCcc
Confidence            566777778888899999988 88887655554332 232111            1233356788999999987666555


Q ss_pred             C
Q psy13922        418 V  418 (509)
Q Consensus       418 ~  418 (509)
                      .
T Consensus       492 ~  492 (570)
T KOG1360|consen  492 A  492 (570)
T ss_pred             c
Confidence            3

>PRK12403 putative aminotransferase; Provisional

Probab=99.60  E-value=1e-12  Score=138.85  Aligned_cols=215  Identities=13%  Similarity=0.072  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++++....  +.+  ..+..+....+++.+.+..+  -..+.+++++++++|+..+++..+.-    |.+
T Consensus        72 hp~v~~A~~~q~~~~~~~--~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~  145 (460)
T PRK12403         72 RKDLAAAAARQMEQLPYY--NMF--FHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKP  145 (460)
T ss_pred             CHHHHHHHHHHHHhCCCe--ecc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCC
Confidence            488999999999883211  111  01123344444544443322  12368999999999999999988632    321


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CCE-----------EEEEecCC--CCCCCCC--------HHHHHHHHHhhhccCCce
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NME-----------QIGYYLDE--SKQWGLP--------ISELERSITEARKHCNPR  160 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~~-----------~~~v~~~~--~~~~~~d--------~~~L~~~i~~~~~~~~~~  160 (509)
                      ++..|+....+|++........ |.+           +..+|...  ..++.+.        .+.+++.+.+..+ .++.
T Consensus       146 ~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~-~~ia  224 (460)
T PRK12403        146 QKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGA-ENVA  224 (460)
T ss_pred             CCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCC-CceE
Confidence            2335666677888765433222 211           12222110  0001111        2445555543211 2577


Q ss_pred             EEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        161 AIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       161 ~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +|++.....-.|. ..+++.+++|.++|++||+++|.||++..|...|.  ......+  ++.++     ++   +++|.
T Consensus       225 avI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~~a~e~~--gv~PD-----iv---~~gK~  292 (460)
T PRK12403        225 GFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE--WFAHEHF--GFEPD-----TL---SIAKG  292 (460)
T ss_pred             EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhhhhhc--CCCCC-----eE---EEccc
Confidence            8887655666676 56789999999999999999999999998865542  2222211  22222     44   57999


Q ss_pred             cCCCCCC-eeEEEeeecCCHHHHHHHH
Q psy13922        240 YMGECGL-RGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       240 ~~G~~Gl-r~G~v~~~~~~~~~~~~l~  265 (509)
                      + | .|. ++|.++   .++++++.+.
T Consensus       293 l-g-gG~~Piga~v---~~~~i~~~~~  314 (460)
T PRK12403        293 L-T-SGYVPMGGLV---LSKRIAEALV  314 (460)
T ss_pred             c-c-ccccceEEEE---ECHHHHHHHh
Confidence            9 4 785 999887   6788888875

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=9.6e-14  Score=146.60  Aligned_cols=213  Identities=13%  Similarity=0.146  Sum_probs=134.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+........+ ..    +.+..+++.+.+...  -..+.+++++++++|++.+++..+..    |..
T Consensus        74 ~p~v~~Ai~~ql~~l~~~~~~~~-~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve~AlklAr~~~~~~g~t  146 (460)
T PRK06916         74 VPELDEAIREQLNKIAHSTLLGL-AN----VPSILLAEKLIEVVP--EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKP  146 (460)
T ss_pred             CHHHHHHHHHHHHhCCCcccccc-CC----HHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            78899999999987321111112 12    233444544443322  12358999999999999999987641    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCC--CCC--------CCHHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESK--QWG--------LPISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~--~~~--------~d~~~L~~~i~~~~~~~~~  159 (509)
                      .+..|+....+|++....+...+.             .+..+|.....  .+.        -+++.+++.++...  .++
T Consensus       147 gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~i  224 (460)
T PRK06916        147 KKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKH--EEI  224 (460)
T ss_pred             CCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCC--CcE
Confidence            355899999999987654433211             11222211100  011        12456667675321  268


Q ss_pred             eEEEEeC-CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        160 RAIVIIN-PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       160 ~~ivi~~-p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      .+|++.. .+.-.|. ..+++.+++|.++|++||+++|.||++..|...|  .......  .++.++     ++   +++
T Consensus       225 AAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG--~~~a~~~--~gv~PD-----iv---~~g  292 (460)
T PRK06916        225 AAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG--KMFACEH--ENVTPD-----IM---TAG  292 (460)
T ss_pred             EEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc--hhhHHHh--cCCCCC-----ee---eee
Confidence            8888875 4666676 5799999999999999999999999999885543  2222221  122222     44   669


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      |.+ | .| +++|.++   .++++++.+.
T Consensus       293 K~l-~-gG~~Pi~av~---~~~ei~~~~~  316 (460)
T PRK06916        293 KGL-T-GGYLPIAITV---TTDEIYNAFY  316 (460)
T ss_pred             hhh-h-cCccccceee---ecHHHHHHhh
Confidence            999 4 78 5999998   7888888774

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=1.8e-13  Score=144.52  Aligned_cols=213  Identities=11%  Similarity=0.100  Sum_probs=134.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+........|.     .+.+..+++.+.+...  ...+.+++++++++|.+.+++..+..    +..
T Consensus        65 ~p~v~~Ai~~ql~~l~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t  137 (466)
T PRK07030         65 NPRINQRIKDQVDQLEHVILAGFS-----HEPVIELSERLVKITP--PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKP  137 (466)
T ss_pred             CHHHHHHHHHHHHhcCCccccccC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            588999999999873211111122     2344445555543322  12358999999999999999987432    211


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CCE------------EEEEecCCCC--CCCC--------CHHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NME------------QIGYYLDESK--QWGL--------PISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~~------------~~~v~~~~~~--~~~~--------d~~~L~~~i~~~~~~~~~  159 (509)
                      .+.+|+...-+|++....+... |..            +..+|.....  .++.        +++.+++.+....  .++
T Consensus       138 ~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~--~~i  215 (466)
T PRK07030        138 RKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHH--DEI  215 (466)
T ss_pred             CCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCC--Cce
Confidence            3457999999999876544332 211            1222211100  0111        2455677776321  267


Q ss_pred             eEEEEeC-CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        160 RAIVIIN-PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       160 ~~ivi~~-p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      .+|++.. .+.-.|. ..+++.+++|.++|++||+++|.||++..|...+.  ......  .++.++     ++   +++
T Consensus       216 AAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~--~~a~~~--~gv~PD-----iv---~~g  283 (466)
T PRK07030        216 AAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT--MFACEQ--AGIRPD-----FL---CLS  283 (466)
T ss_pred             EEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc--chHHHh--cCCCCC-----EE---eee
Confidence            8888865 3555576 77889999999999999999999999999866542  222221  123332     44   569


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      |.+ | .| +++|.++   .++++++.+.
T Consensus       284 Kgl-~-gG~~Pi~av~---~~~ei~~~~~  307 (466)
T PRK07030        284 KAL-T-GGYLPLAAVL---TTDTVYQAFY  307 (466)
T ss_pred             hhc-c-CCcccceEEE---ecHHHHHHHh
Confidence            999 4 79 5999998   7999988874

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=3.6e-13  Score=140.73  Aligned_cols=208  Identities=14%  Similarity=0.122  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.+.+++.+++++........+ ..    +....+++.+.+..+  -..+.+++++++++|++.+++..+.-    |.+
T Consensus        58 ~p~i~~ai~~q~~~~~~~~~~~~-~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~  130 (422)
T PRK05630         58 HPRLKAAAHKQIDTMSHVMFGGL-TH----EPAIKLTRKLLNLTD--NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHP  130 (422)
T ss_pred             CHHHHHHHHHHHHhCCCcccCCc-CC----HHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            68999999999987321111111 12    233444444443322  12368999999999999999886532    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCCCCCCC-------HHHHHHHHHhhhccCCceE
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESKQWGLP-------ISELERSITEARKHCNPRA  161 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~~d-------~~~L~~~i~~~~~~~~~~~  161 (509)
                      ++.+|+....+|++....+... +.             ....+|....  ...+       .+.+++.+.+     ++.+
T Consensus       131 ~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~-----~iAA  203 (422)
T PRK05630        131 ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV--RGSSPQEISEYLRSLELLIDE-----TVAA  203 (422)
T ss_pred             CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc--cCCChHHHHHHHHHHHHHHhh-----ceEE
Confidence            3457999999999865443322 11             1122222111  0111       2334444443     6888


Q ss_pred             EEEeC-CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        162 IVIIN-PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       162 ivi~~-p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      |++.. ++.-.|. ..+++.+++|.++|++||+++|.||++..|...+  .......  .++.++     ++   +++|.
T Consensus       204 vi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG--~~~a~~~--~gv~PD-----i~---t~gK~  271 (422)
T PRK05630        204 IIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG--ELFATLA--AGVTPD-----IM---CVGKA  271 (422)
T ss_pred             EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc--hhhHHHh--cCCCCC-----ee---eeech
Confidence            88875 3666777 5678899999999999999999999998875543  2222211  122222     33   77999


Q ss_pred             cCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        240 YMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       240 ~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      ++  .| .++|+++   .++++.+.+.
T Consensus       272 l~--gG~~p~~av~---~~~~i~~~~~  293 (422)
T PRK05630        272 LT--GGFMSFAATL---CTDKVAQLIS  293 (422)
T ss_pred             hh--cCccccceee---ccHHHHHHHh
Confidence            84  67 5899998   7999988875

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.59  E-value=1.3e-12  Score=138.19  Aligned_cols=215  Identities=12%  Similarity=0.077  Sum_probs=135.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC---CCCCcEEEeCCHHHHHHHHHHHhhcC----
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP---ADWQDVILSAGASDGIKSVLKLLIED----   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~---~~~~~i~~t~G~~~al~~~~~~l~~~----   99 (509)
                      +|.|.+++.+++++........|.     .+.+..+++.+.+.....   -..+.+++++++++|++.+++..+.-    
T Consensus        82 ~p~i~~Ai~~q~~~l~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~  156 (472)
T PRK08742         82 EPRIGAAIAAQAGELEQVMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNR  156 (472)
T ss_pred             CHHHHHHHHHHHHhCCCccccccC-----CHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhc
Confidence            588999999988763211111122     223445555554432210   02358999999999999999987542    


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCC--CCCC--------CHHHHHHHHHhhhcc
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESK--QWGL--------PISELERSITEARKH  156 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~--~~~~--------d~~~L~~~i~~~~~~  156 (509)
                      |..++.+|+...-+|++....+...+.             .+..+|.....  .++.        +++.+++.+...  .
T Consensus       157 g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~  234 (472)
T PRK08742        157 GEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQS--P  234 (472)
T ss_pred             CCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhC--C
Confidence            322355899999999987654433211             11222221100  0111        245666666531  1


Q ss_pred             CCceEEEEeC-CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEE
Q psy13922        157 CNPRAIVIIN-PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFM  234 (509)
Q Consensus       157 ~~~~~ivi~~-p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  234 (509)
                      .++.+|++.. .++-.|. ..+++.++++.++|++||+++|.||++..|...+  .......  .++.++     ++   
T Consensus       235 ~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG--~~~a~e~--~gv~PD-----iv---  302 (472)
T PRK08742        235 GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG--TLFACEQ--AGVMPD-----LL---  302 (472)
T ss_pred             CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc--cchHHHh--cCCCCC-----EE---
Confidence            2678888865 4666676 6789999999999999999999999999987654  2322222  123222     44   


Q ss_pred             ecccccCCCCCC-eeEEEeeecCCHHHHHHHH
Q psy13922        235 SCSKGYMGECGL-RGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       235 S~SK~~~G~~Gl-r~G~v~~~~~~~~~~~~l~  265 (509)
                      +++|.+ | .|+ ++|.++   .++++++.+.
T Consensus       303 ~~gKgl-~-gG~~Plaav~---~~~ei~~~~~  329 (472)
T PRK08742        303 CLSKGL-T-GGFLPLSAVL---ATQQLYDAFL  329 (472)
T ss_pred             EEcccc-c-CCCCCcceee---ccHHHHHHhh
Confidence            569999 4 784 999998   7999988774

>PRK07483 hypothetical protein; Provisional

Probab=99.58  E-value=1.1e-12  Score=137.88  Aligned_cols=215  Identities=15%  Similarity=0.093  Sum_probs=131.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.|.+++.+++.+...-....|.     .+....+++.+.+...  -..+.+++++++++|++.+++..+.-    |.+
T Consensus        48 ~p~v~~av~~ql~~~~~~~~~~~~-----~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~  120 (443)
T PRK07483         48 HPRVIAAIHAQIDRLAYAHTSFFT-----TEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQP  120 (443)
T ss_pred             CHHHHHHHHHHHHhccCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            588999999999873211111121     2344455555544322  12368999999999999999887542    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CCE------------EEEEecCCCCCC---CCC--------HHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NME------------QIGYYLDESKQW---GLP--------ISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~~------------~~~v~~~~~~~~---~~d--------~~~L~~~i~~~~~~~~  158 (509)
                      .+.+|+....+|++........ |-.            +..++.....+.   ..+        ++.+++.+..... .+
T Consensus       121 ~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~  199 (443)
T PRK07483        121 QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGP-DT  199 (443)
T ss_pred             CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCC-Cc
Confidence            3557999999999876443322 110            111221100000   000        2456665542111 26


Q ss_pred             ceEEEEeCCCC-CCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        159 PRAIVIINPGN-PTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       159 ~~~ivi~~p~N-PtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                      +.+|++...+. -.| ...+++.+++|.++|++||+++|.||++..|...+  .+.....+  ++.++     ++   ++
T Consensus       200 iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG--~~~a~~~~--gv~PD-----iv---~~  267 (443)
T PRK07483        200 VAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG--TLFACEED--GVAPD-----LV---TI  267 (443)
T ss_pred             eEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc--HHHHHhhc--CCCCC-----ee---ee
Confidence            77888864443 335 47788999999999999999999999999986554  22222221  22222     33   66


Q ss_pred             ccccCCCCCC-eeEEEeeecCCHHHHHHHHH
Q psy13922        237 SKGYMGECGL-RGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       237 SK~~~G~~Gl-r~G~v~~~~~~~~~~~~l~~  266 (509)
                      +|.++  .|+ ++|.++   .++++.+.+..
T Consensus       268 gK~l~--gG~~Pi~av~---~~~~i~~~~~~  293 (443)
T PRK07483        268 AKGLG--AGYQPIGAVL---ASDRIYDAIAD  293 (443)
T ss_pred             hhhhc--cCccccEEEE---EcHHHHHHHhc
Confidence            99994  796 999998   78899888753

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.58  E-value=7e-13  Score=135.49  Aligned_cols=218  Identities=13%  Similarity=0.118  Sum_probs=140.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh----cCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI----EDVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~  102 (509)
                      -+.+.+++.+++.+..--......... ..+|-+.++++.-.     -+-++|++|+|+++|++.+++...    ..|.+
T Consensus        62 ~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~-----~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p  135 (449)
T COG0161          62 RPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPE-----GGLDHVFFTDSGSEAVETALKMALQYWRARGQP  135 (449)
T ss_pred             CHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCC-----CCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence            478999999999985432222122212 35566666665510     125689999999999999998864    35665


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC--------------EEEEEecCC---C---CCCC----CCHHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM--------------EQIGYYLDE---S---KQWG----LPISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~---~---~~~~----~d~~~L~~~i~~~~~~~~  158 (509)
                      +|.++|.-...|++-.-.....|.              .+..++...   .   +.+.    -..++|++.|..+.. .+
T Consensus       136 ~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~-~~  214 (449)
T COG0161         136 QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGP-ET  214 (449)
T ss_pred             cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCc-cc
Confidence            666788889999875433222211              122222211   0   1111    125677777776431 26


Q ss_pred             ceEEEEeCCCCC-CCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        159 PRAIVIINPGNP-TGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       159 ~~~ivi~~p~NP-tG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                      +.++|+.....- +|. ++|+..|+++.++|++||+++|.||+-.+|..+|.  ......  .++.++        +-++
T Consensus       215 IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~--~FA~e~--~gi~PD--------i~~~  282 (449)
T COG0161         215 IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK--MFACEH--AGIVPD--------ILCL  282 (449)
T ss_pred             EEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch--hhhhhh--cCCCCC--------eeee
Confidence            778777544444 775 77889999999999999999999999999988762  222222  223332        4467


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHh
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~  267 (509)
                      +|.++ -.-+++|.++   .+.++.+.+..-
T Consensus       283 aKGLT-~GY~Pl~a~l---~~~~I~~~~~~~  309 (449)
T COG0161         283 AKGLT-GGYLPLSAVL---TSDRIYEAFSDG  309 (449)
T ss_pred             ccccc-ccchhhHhHh---hhHHHHHHHhcc
Confidence            99885 2457888887   688888888764

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.57  E-value=4.8e-13  Score=139.98  Aligned_cols=293  Identities=14%  Similarity=0.148  Sum_probs=195.9

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC-
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV-  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g-  100 (509)
                      ..+..++...+.+...+......+.. |+   +..++.+.+..++.+.++.+ ..-.-.+|+|+|+++.+.+.+..... 
T Consensus        70 ~~~~~~~~a~~~~~~~~~~nl~d~~~-~p---~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~  144 (460)
T COG0076          70 CPTRVPPVAAELLVSALNKNLGDPDE-SP---AAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWR  144 (460)
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCCccc-Ch---hHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHH
Confidence            45556677777777777773322222 44   66889999999999988855 33357899999999988887764321 


Q ss_pred             ---------CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceE--EEEeCCCC
Q psy13922        101 ---------DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRA--IVIINPGN  169 (509)
Q Consensus       101 ---------d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~--ivi~~p~N  169 (509)
                               ..+.+.|+++.-.|.++...+..+|.....+++++. ++.+|++.+++.+++.     +..  |+.+.++-
T Consensus       145 ~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~-----t~~g~vV~~aGtT  218 (460)
T COG0076         145 KRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDEN-----TIGGVVVGTAGTT  218 (460)
T ss_pred             HHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhh-----ccCceEEEEecCC
Confidence                     001236999999999999999999999999999875 6799999999999984     444  77789999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      ++|.+   +++++|.++|+++++++++|.+|+.+..--    ......   .....+..+.|++ +++|..  ..-...|
T Consensus       219 ~~G~i---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf----~~~~~~---~~f~l~~vdSIt~-d~HK~g--~aP~~~G  285 (460)
T COG0076         219 DTGSI---DDIEELADIAEEYGIWLHVDAAFGGFLLPF----LEPDGR---WDFGLEGVDSITV-DGHKYG--LAPIGCG  285 (460)
T ss_pred             CCCcc---CCHHHHHHHHHHcCCcEEEEccccceeecc----cCccch---hhcCCCCceEEEE-Cccccc--CCCCCce
Confidence            99998   779999999999999999999999876421    111100   0011124567877 889995  5778999


Q ss_pred             EEeeecCCH-HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        250 YSEVINLDP-GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       250 ~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      |+++  .++ .+.+.+.. ...+......           +.+          .+.++++.  . .++.....       
T Consensus       286 ~il~--rd~e~l~~~~~~-~~~yl~~~~~-----------~~~----------ti~~sr~~--~-~~~~~~~~-------  331 (460)
T COG0076         286 VVLF--RDEEALRRILIF-ADYYLPGGGI-----------PNF----------TILGSRPG--R-QALALYAN-------  331 (460)
T ss_pred             EEEE--ECHHHhhhhhhc-ccccCCCCCc-----------Cce----------eEeeccch--H-HHHHHHHH-------
Confidence            9987  888 45554432 2211111000           000          01111111  0 11111111       


Q ss_pred             chHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEe
Q psy13922        329 SYEQ-FSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAF  373 (509)
Q Consensus       329 ~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~  373 (509)
                       +.. ..+.++++.+...+.+.++.+.|++.+.+++.. |..+...+
T Consensus       332 -l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~f  377 (460)
T COG0076         332 -LRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAF  377 (460)
T ss_pred             -HHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEE
Confidence             011 123467778888899999999999996688875 55554443

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.57  E-value=7.1e-13  Score=138.87  Aligned_cols=213  Identities=12%  Similarity=0.090  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      +|.+.+++.+++.+....... +.......++-+.+++..    +  -.-+.+++++++++|++.+++..+..    +.+
T Consensus        63 ~p~v~~ai~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~----~--~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~  135 (427)
T TIGR00508        63 HPRLNAAAQKQIDKMSHVMFG-GFTHKPAIELCQKLVKMT----P--NALDCVFLADSGSVAVEVALKMALQYWQAKGEK  135 (427)
T ss_pred             CHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHhhC----C--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCC
Confidence            689999999998873211111 111222234444444433    2  12368999999999999999876542    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-CCE-------------EEEEecCCCCCCC-----CCHHHHHHHHHhhhccCCceEEE
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-NME-------------QIGYYLDESKQWG-----LPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~v~~~~~~~~~-----~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      .+..|+....+|++....+... +..             +..++.. ...+.     -|++.+++.+....  .++.+|+
T Consensus       136 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~~~l~~~~--~~vaavi  212 (427)
T TIGR00508       136 NRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLAKLMELHS--DEIAAVI  212 (427)
T ss_pred             CccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHHHHHHhcC--CcEEEEE
Confidence            2458999999999875443332 211             0111110 00111     14567777776421  2567777


Q ss_pred             EeCC-CCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        164 IINP-GNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       164 i~~p-~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +... ++-.|. ..+.+++++|.++|++||+++|+||++.++...+.  ......  .++.++     ++   +++|.+ 
T Consensus       213 vEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~--~~~~~~--~~v~pD-----i~---~~gK~l-  279 (427)
T TIGR00508       213 LEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK--LFACEH--AGVVPD-----IL---CVGKAL-  279 (427)
T ss_pred             EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--cchhhh--cCCCCC-----EE---Eechhh-
Confidence            7653 666665 66899999999999999999999999987755432  212111  122221     33   469999 


Q ss_pred             CCCCC-eeEEEeeecCCHHHHHHHHH
Q psy13922        242 GECGL-RGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       242 G~~Gl-r~G~v~~~~~~~~~~~~l~~  266 (509)
                      | .|+ .++.++   .++++++.+..
T Consensus       280 ~-gG~~p~~a~~---~~~~~~~~~~~  301 (427)
T TIGR00508       280 T-GGYMTLSATV---TTDKVAQTISS  301 (427)
T ss_pred             h-cCcccceEEE---EcHHHHHHHhc
Confidence            4 785 788887   78899888864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.56  E-value=2.6e-12  Score=135.69  Aligned_cols=230  Identities=14%  Similarity=0.112  Sum_probs=131.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      +|.|.+++.+++.+..  .+. +.  .-..+.+..+++.+.+..+..... ..++++++++||.+.+++..+....  ++
T Consensus        76 ~p~v~~Ai~~q~~~~~--~~~-~~--~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tg--r~  148 (459)
T PRK06931         76 HPDVLQSIQDVLTSGL--PLH-TL--DLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTG--RS  148 (459)
T ss_pred             CHHHHHHHHHHHhhhc--ccc-cc--ccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcC--CC
Confidence            6889999999887611  111 11  011345555666665442211011 2346668889999999998765432  45


Q ss_pred             eEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCC--CCCC----CCHHHHHHHHHhhh-----ccCCceE
Q psy13922        106 GVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDES--KQWG----LPISELERSITEAR-----KHCNPRA  161 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~--~~~~----~d~~~L~~~i~~~~-----~~~~~~~  161 (509)
                      .|+...-+|++....+...+.             .+..+|....  ..|.    -+.+.+++.++...     ...++.+
T Consensus       149 ~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAA  228 (459)
T PRK06931        149 NVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAA  228 (459)
T ss_pred             eEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEE
Confidence            799999999998755543211             1222222110  0011    02333333222211     1125788


Q ss_pred             EEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccccc
Q psy13922        162 IVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY  240 (509)
Q Consensus       162 ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  240 (509)
                      |++...+.-.|. ..+++.++++.++|++||+++|.||++.+|...+  .......  .++.++     +   .+++|.+
T Consensus       229 vI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG--~~~a~~~--~gv~PD-----i---vt~gK~l  296 (459)
T PRK06931        229 VILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG--KMFAFEH--AGIEPD-----I---IVMSKAV  296 (459)
T ss_pred             EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc--hHHHhhh--cCCCCC-----E---EEecccc
Confidence            888544544565 6789999999999999999999999999986554  2222222  122222     3   3669999


Q ss_pred             CCCCCCeeEEEeeecCCHHHHHHHHHh-hhcccCcchhhhhc
Q psy13922        241 MGECGLRGGYSEVINLDPGVKAMLHKS-ISAMLCPTVLALVS  281 (509)
Q Consensus       241 ~G~~Glr~G~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~  281 (509)
                       | .|+++|.++   .++++ +.+... ...+.+.+.+++++
T Consensus       297 -~-gG~Pi~av~---~~~~~-~~~~~~~~~~T~~gnpla~aa  332 (459)
T PRK06931        297 -G-GGLPLAVLG---IKKEF-DAWQPGGHTGTFRGNQLAMAT  332 (459)
T ss_pred             -c-CCcceeeee---eHHHH-hhccCCCCCCCCCCCHHHHHH
Confidence             4 799999876   45553 554321 11333455554444

>PRK06148 hypothetical protein; Provisional

Probab=99.56  E-value=1.6e-12  Score=149.00  Aligned_cols=228  Identities=10%  Similarity=0.043  Sum_probs=138.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|.|.+++.+++....  ....|.     .+....+++.+.+...  -.-+.++++++++||+..+++..+....  ++.
T Consensus       640 hp~v~~Ai~~q~~~l~--~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA~e~AlklAr~~tG--r~~  708 (1013)
T PRK06148        640 HPRVVAAAARQAARLN--TNTRYL-----HDAIVAYAERLTATLP--DGLTVAFFVNSGSEANSLALRLARAHTG--QRD  708 (1013)
T ss_pred             CHHHHHHHHHHHhhcC--CcCCcC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHhcC--CCe
Confidence            6889999999998732  122232     2334445554443322  1235799999999999999998876432  447


Q ss_pred             EEEcCCCChhHHHHHHhc-C------------CEEEEEecCC--CCCCCC-C-------HHHHHHHHHhhhc-cCCceEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-N------------MEQIGYYLDE--SKQWGL-P-------ISELERSITEARK-HCNPRAI  162 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~--~~~~~~-d-------~~~L~~~i~~~~~-~~~~~~i  162 (509)
                      |+....+|++....+... +            ..+..++...  ...|.. +       .+.+++.++.... ..++.+|
T Consensus       709 ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAv  788 (1013)
T PRK06148        709 AIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFF  788 (1013)
T ss_pred             EEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEE
Confidence            999999999875433221 1            0111111110  001111 1       1345555543211 1257888


Q ss_pred             EEeCCCCCCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      ++.....-.| ...+++.++++.++|+++|+++|.||++.+|...|. .+......  ++.++     +   -+++|.+ 
T Consensus       789 I~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~-~~~a~e~~--gv~PD-----i---vt~gK~l-  856 (1013)
T PRK06148        789 IAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS-HWWAFETQ--GVVPD-----I---VTMGKPI-  856 (1013)
T ss_pred             EEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC-cchhhhhc--CCCcc-----e---eeecccc-
Confidence            8854444445 477899999999999999999999999999866542 12222221  22222     3   3669999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhh--hcccCcchhhhhc
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSI--SAMLCPTVLALVS  281 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~  281 (509)
                      | .|+++|.++   .++++++.+....  ..+.+.+.+++++
T Consensus       857 g-gG~Plgav~---~~~ei~~~~~~g~~~~~Tf~gnpla~aa  894 (1013)
T PRK06148        857 G-NGHPMGAVV---TTREIADSFDNGMEYFNTFGGNPVSCAI  894 (1013)
T ss_pred             c-CCcceEEEE---EcHHHHhhccCCCccccCCCCCHHHHHH
Confidence            5 899999998   7899998875321  1334455554444

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.55  E-value=5.2e-12  Score=133.54  Aligned_cols=301  Identities=15%  Similarity=0.094  Sum_probs=168.8

Q ss_pred             CCCCCCHHHHHHHHHHHhc-cc-CCCccc-CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE---eCCHHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDG-CR-GQSVGS-YTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL---SAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~-~~-~~~~~~-Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~---t~G~~~al~~~~~~   95 (509)
                      ..+..++.+++++...+.+ .. +....+ |+......++.+...+...+.++  ...+.+++   +.+++.|+..++.+
T Consensus        42 sen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~a  119 (475)
T PLN03226         42 SENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQPLSGSPANFAVYTA  119 (475)
T ss_pred             CCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecCcCchHHHHHHHHHH
Confidence            5666789999999888843 11 111112 33333333343322222333333  23344444   35667788899999


Q ss_pred             hhcCCCCCCCeEEEcCC---CChhHHHHH---HhcCCE----EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922         96 LIEDVDGKKPGVLIPIP---QYPLYSASL---AEFNME----QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus        96 l~~~gd~~~~~Vlv~~p---~y~~~~~~~---~~~g~~----~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                      ++++||    +|+..+.   .|..+....   +..+..    ++++.++++ +..+|+++|++.+.+.    ++++|++.
T Consensus       120 L~~pgD----~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~-~g~iD~d~Le~~l~~~----~pklIv~~  190 (475)
T PLN03226        120 LLQPHD----RIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDES-TGLIDYDKLEKKAMLF----RPKLIIAG  190 (475)
T ss_pred             hCCCCC----EEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCC-CCCcCHHHHHHHHhhc----CCeEEEEe
Confidence            999999    9998553   222222111   111222    224444543 3578999999999764    68876653


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       166 ~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                       .++ +|...+   +++|.++|+++|+++++|+++.......+....++.           ..++ +++|++|++.   |
T Consensus       191 -~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-----------~~Di-v~~t~hK~L~---G  250 (475)
T PLN03226        191 -ASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-----------YCDV-VTTTTHKSLR---G  250 (475)
T ss_pred             -cCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-----------CCeE-EEecCccccc---C
Confidence             233 566655   778999999999999999998775543221111110           2234 4669999883   4


Q ss_pred             CeeEEEeeecCCHHHHH-----------H---HHHhhh-c-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        246 LRGGYSEVINLDPGVKA-----------M---LHKSIS-A-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~-----------~---l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      -+.|+++   .++++++           .   +..... . .++++..                                
T Consensus       251 P~Gg~I~---~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~--------------------------------  295 (475)
T PLN03226        251 PRGGMIF---FRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNH--------------------------------  295 (475)
T ss_pred             CCceEEE---EchhhcccccCCCccHHHHHHHhccccCCccCCCchHH--------------------------------
Confidence            4557776   4554432           1   111110 0 1111111                                


Q ss_pred             ccccchhhcccCCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-ceeEEeecCCCCHHHHHHHh
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQFS-REKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-GAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~  387 (509)
                        ..+++..++.          ... ...++.++.+.++..++.+.|.+. |+++..+. ..-.+++++. +        
T Consensus       296 --~iaal~aAl~----------~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~-~--------  353 (475)
T PLN03226        296 --TIAALAVALK----------QAMTPEFKAYQKQVKANAAALANRLMSK-GYKLVTGGTDNHLVLWDLR-P--------  353 (475)
T ss_pred             --HHHHHHHHHH----------HHhCcCHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCCCCEEEEEcc-C--------
Confidence              2222222221          110 014566788889999999999886 98887532 2344455553 1        


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        388 AEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                       .|+. ..+ +...|++.||.+..+.
T Consensus       354 -~gi~-~~~-~~~~L~~~~I~~nk~~  376 (475)
T PLN03226        354 -LGLT-GSR-VEKVLDLAHITLNKNA  376 (475)
T ss_pred             -CCCC-HHH-HHHHHHHCCCEECCCC
Confidence             1332 222 5788999999998654

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.55  E-value=7.4e-14  Score=138.04  Aligned_cols=205  Identities=18%  Similarity=0.180  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeE
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGV  107 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~V  107 (509)
                      +.+.+++.++...    .-. |+......++.+.++++++        .+..++++++|.+..+++++++++++    .|
T Consensus         9 ~~m~~a~~~a~~g----d~~-Yg~D~~~~~l~~~i~~l~g--------~e~a~f~~sGT~An~~al~~~~~~~~----~v   71 (290)
T PF01212_consen    9 PAMLEAMAAANVG----DDA-YGEDPTTARLEERIAELFG--------KEAALFVPSGTMANQLALRAHLRPGE----SV   71 (290)
T ss_dssp             HHEEHHHHHTTSB-----CC-TTSSHHHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHHHHTTE----EE
T ss_pred             HHHHHHHHccccC----Ccc-cCCChhHHHHHHHHHHHcC--------CCEEEEeCCCChHHHHHHHHHHhcCC----ce
Confidence            4555555333332    334 9998888999999999993        45667899999999999999999988    99


Q ss_pred             EEcCCCChhHH---HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCC-CCCCCHHHHHH
Q psy13922        108 LIPIPQYPLYS---ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPT-GQVLTKENIQD  182 (509)
Q Consensus       108 lv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPt-G~~~s~~~l~~  182 (509)
                      ++..+.|....   ......|.+++.++..+.+  .+|++.|++.+.....+ +++++|+|++|+|-. |+++|.+++++
T Consensus        72 i~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G--~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~a  149 (290)
T PF01212_consen   72 ICADTAHIHFDETGAIEELSGAKLIPLPSDDDG--KLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRA  149 (290)
T ss_dssp             EEETTEHHHHSSTTHHHHHTTCEEEEEBECTGT--BB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHH
T ss_pred             eccccceeeeeccchhhHhcCcEEEECCCcccC--CCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHH
Confidence            99998766432   2235589999999987632  78999999999884332 478999999999974 78999999999


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |.++|+++|+.++.|-+--.....  ....++.++..       ..+++++ |++|.. |+++   |.+++  .++++++
T Consensus       150 i~~~a~~~gl~lhmDGARl~~a~~--~~~~~~~e~~~-------~~D~v~~-~~tK~~-g~~~---Gavl~--~~~~~i~  213 (290)
T PF01212_consen  150 ISELAREHGLPLHMDGARLANAAA--ALGVSLAEIAA-------GADSVSF-GGTKNG-GAPG---GAVLA--GNKEFIA  213 (290)
T ss_dssp             HHHHHHHHT-EEEEEETTHHHHHC--HHHHHHHHHHT-------TSSEEEE-ETTSTT--SSS---EEEEE--ESHHHHH
T ss_pred             HHHHHHhCceEEEEehhhHHHhhh--cccccHHHHhh-------hCCEEEE-EEEccc-cccc---ceEEE--echHHHH
Confidence            999999999999999763221110  01223344431       3458877 999987 5543   55554  7888766


Q ss_pred             HHHHh
Q psy13922        263 MLHKS  267 (509)
Q Consensus       263 ~l~~~  267 (509)
                      .....
T Consensus       214 ~~~~~  218 (290)
T PF01212_consen  214 KARRQ  218 (290)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK06149 hypothetical protein; Provisional

Probab=99.55  E-value=4.2e-12  Score=145.48  Aligned_cols=213  Identities=12%  Similarity=0.102  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|.|.+++.+++....  ...+|.     .+....+++.+.+...  -..+.++++++|++|...+++..+.-..  ++.
T Consensus       601 hp~v~~Ai~~q~~~l~--~~~~~~-----~~~~~elae~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~tg--r~~  669 (972)
T PRK06149        601 HPRLAAAAARQWSLLN--TNSRFH-----YAAVAEFSERLAALAP--DGLDTVFLVNSGSEANDLAIRLAWAASG--RRD  669 (972)
T ss_pred             CHHHHHHHHHHHHhcc--cccccc-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHhcC--CCe
Confidence            5889999999888732  111121     2233444444433321  1235899999999999999996654322  347


Q ss_pred             EEEcCCCChhHHHHHHhc-C-----CE--------EEEEecCCC--CCCC-CC-----HHHHHHHHHhhhc-cCCceEEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-N-----ME--------QIGYYLDES--KQWG-LP-----ISELERSITEARK-HCNPRAIV  163 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g-----~~--------~~~v~~~~~--~~~~-~d-----~~~L~~~i~~~~~-~~~~~~iv  163 (509)
                      |+...-+|++........ +     ..        +..++....  ..|. .+     .+.+++.++.... ..++.+|+
T Consensus       670 ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI  749 (972)
T PRK06149        670 VVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFI  749 (972)
T ss_pred             EEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence            888888898765332111 0     00        122221111  1121 12     2444555543211 13577777


Q ss_pred             EeCC-CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINP-GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p-~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      +... ++-.....+++.+++|.++|++||+++|.||++.+|...|. .+..+...  ++.++     ++   +++|.+ |
T Consensus       750 ~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~-~~~a~e~~--gv~PD-----iv---t~gK~l-g  817 (972)
T PRK06149        750 CEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGH-YFWGFEQQ--GVVPD-----II---TMAKGM-G  817 (972)
T ss_pred             EcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCc-cchhhhhc--CCCCC-----EE---Eecccc-c
Confidence            7544 44444578899999999999999999999999988866542 12233221  22222     44   779999 5


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                       .|+++|.++   .++++++.+..
T Consensus       818 -~G~Pl~av~---~~~~i~~~~~~  837 (972)
T PRK06149        818 -NGHPLGAVI---TRREIAEALEA  837 (972)
T ss_pred             -CCeeeEEEE---EcHHHHhhhcc
Confidence             799999998   78899988864

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.53  E-value=7.8e-12  Score=131.49  Aligned_cols=173  Identities=11%  Similarity=0.091  Sum_probs=103.6

Q ss_pred             CHHHHH--HHHHHHhcccC--CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC---
Q psy13922         27 PDDVKQ--RAQAVLDGCRG--QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED---   99 (509)
Q Consensus        27 p~~v~~--a~~~~l~~~~~--~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---   99 (509)
                      +|.|.+  ++.+++.+...  .....|. .    +....+++.+.+..+ +-..+.|+++++++||++.+++..+..   
T Consensus        63 ~p~v~~~~ai~~ql~~l~~~~~~~~~~~-~----~~~~~la~~l~~~~~-p~~~~~v~f~~SGsEAve~AlKlAr~~~~~  136 (443)
T PRK08297         63 HPALADDPEFRAELGRAALNKPSNSDVY-T----VEMARFVDTFARVLG-DPELPHLFFVDGGALAVENALKVAFDWKSR  136 (443)
T ss_pred             ChHHhhHHHHHHHHHHhhhhccccCCcC-C----HHHHHHHHHHHhhcC-CCCCCEEEEeCchHHHHHHHHHHHHHHhhc
Confidence            577888  88888876321  0111121 1    222334433332211 112358999999999999999987532   


Q ss_pred             -----CC--CCCCeEEEcCCCChhHHHHHHhc-CCEEE---EEec-------CCCCCC---C-----C------CHHHHH
Q psy13922        100 -----VD--GKKPGVLIPIPQYPLYSASLAEF-NMEQI---GYYL-------DESKQW---G-----L------PISELE  147 (509)
Q Consensus       100 -----gd--~~~~~Vlv~~p~y~~~~~~~~~~-g~~~~---~v~~-------~~~~~~---~-----~------d~~~L~  147 (509)
                           |.  +.+.+|+...-+|++....+... |....   ..+.       .+...+   .     .      +++.++
T Consensus       137 ~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (443)
T PRK08297        137 KNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQAR  216 (443)
T ss_pred             cccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHH
Confidence                 21  12457999999999876554432 21100   0000       000000   0     0      234555


Q ss_pred             HHHHhhhccCCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        148 RSITEARKHCNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       148 ~~i~~~~~~~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      +.+.+..  .++.+|++.....-.|. ..|++.+++|.++|++||+++|.||++.+|...+
T Consensus       217 ~~i~~~~--~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG  275 (443)
T PRK08297        217 AAFERHP--HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTG  275 (443)
T ss_pred             HHHHhCC--CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccc
Confidence            6665321  26888888655555565 6889999999999999999999999999886653

>KOG1401|consensus

Probab=99.53  E-value=1.9e-12  Score=127.95  Aligned_cols=286  Identities=14%  Similarity=0.103  Sum_probs=178.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC---C-
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD---G-  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd---~-  102 (509)
                      .|++.+++.+...+....... |-.-. .-++.+.+.+.+    +.. ..+.|++.+++|+|+..+++..++-.-   + 
T Consensus        74 npev~ral~~q~~k~~hs~~~-~~t~e-av~l~~~l~~~~----~~~-~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~  146 (433)
T KOG1401|consen   74 NPEVARALAEQAKKLGHSSNG-YFTLE-AVELEEVLSAVL----GKG-SAERVFFCNSGTEANETALKFARKFTGKKHPE  146 (433)
T ss_pred             CHHHHHHHHHHHhhheeccCc-cccHH-HHHHHHHHHhcc----cCC-CccEEEEecCCcHHHHHHHHHHHHhhcccCCc
Confidence            688889988888873211112 21111 233444444333    322 678999999999999999988765321   0 


Q ss_pred             CCCeEEEcCCCChhHHHHHHh-cCCEEEEEecC---CCC--CCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-CC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAE-FNMEQIGYYLD---ESK--QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ-VL  175 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~---~~~--~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-~~  175 (509)
                      ++..+|....+|++-...+.. .+..-...|.+   ++-  --.-|+..+++.++.+..  .+.++|+...+.-.|. ..
T Consensus       147 ~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~--~IaAVIvEPiqGaGG~~p~  224 (433)
T KOG1401|consen  147 KKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG--EIAAVIVEPIQGAGGIIPA  224 (433)
T ss_pred             cceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC--ceEEEEEecccCCCCcccC
Confidence            112588888899886544332 33222222221   110  001268999999988632  3788888766777776 77


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      .++.+..|.++|+++++++|.||++.+|...+..--.....    +.++        +.++.|.+ | .|+++|..+   
T Consensus       225 ~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~----~~PD--------I~t~aK~L-~-gGlPigA~~---  287 (433)
T KOG1401|consen  225 DPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFG----VTPD--------ITTVAKPL-G-GGLPIGATG---  287 (433)
T ss_pred             CHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhC----cCCc--------ceeehhhc-c-CCceeEEEe---
Confidence            88999999999999999999999999987654311112222    2222        55779999 5 899999998   


Q ss_pred             CCHHHHHHHHHhhh----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        256 LDPGVKAMLHKSIS----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       256 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      .+.++.+.+..-..    .+.+.+.+++.+                              +..++..+..         .
T Consensus       288 v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa------------------------------~~~~l~~l~~---------~  328 (433)
T KOG1401|consen  288 VRDKVAEMISPGDHLYHGGTFSGNPLACSA------------------------------GIKVLDELKD---------P  328 (433)
T ss_pred             ehHHHHhhcCCCCccccCcccCCChhhhhH------------------------------HHHHHHHHcC---------H
Confidence            79999998864322    334455554444                              5566666654         2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCH
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA  380 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~  380 (509)
                      .+   +.++.+.-+..++.+.+.+.+-+....-....++++.+.+..|.
T Consensus       329 e~---~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~  374 (433)
T KOG1401|consen  329 ET---LKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPV  374 (433)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeech
Confidence            33   66677777777777888877754322111334555555555443

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.52  E-value=1.8e-12  Score=132.95  Aligned_cols=340  Identities=11%  Similarity=0.074  Sum_probs=189.3

Q ss_pred             CCCC-CCCCCCHHHHHHHHHHHhcccCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEe-CCHHHHHHHHH
Q psy13922         18 PQLF-DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILS-AGASDGIKSVL   93 (509)
Q Consensus        18 ~~~~-~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t-~G~~~al~~~~   93 (509)
                      ++.. |+-.+|+.|++++........  ..+++++  ..-+.+.|+.++++++    .+ +..+|+++ +|+|.+++.++
T Consensus         5 ~~f~pGP~~~~~~v~~a~~~~~~~~~--~~~hr~~~f~~~~~~~r~~l~~l~~----~~-~~~~v~f~~gs~T~a~~~~~   77 (361)
T TIGR01366         5 GRFGSGPSKVRLEQLQALTTTAASLF--GTSHRQAPVKNLVGRVREGLAELFS----LP-DGYEVILGNGGATAFWDAAT   77 (361)
T ss_pred             CcccCCCcCCCHHHHHHHHhcCcccc--ccCcCChHHHHHHHHHHHHHHHHhC----CC-CCceEEEECCchhHHHHHHH
Confidence            4433 566689999999754321110  0122332  2344667888888873    21 23478886 55999999999


Q ss_pred             HHhhcCCCCCCCeEEEcCCCChh-HHHHHHh--cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         94 KLLIEDVDGKKPGVLIPIPQYPL-YSASLAE--FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        94 ~~l~~~gd~~~~~Vlv~~p~y~~-~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                      ..+..+ +    .+++..-.|.. +...++.  ++.++..++.+...  .++.     .+..     ++++|.+++..|.
T Consensus        78 ~~l~~~-~----~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~-----~~~~-----~~~lV~~~h~et~  140 (361)
T TIGR01366        78 FGLIEK-K----SLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGS--APEP-----QADP-----GVDVIAWAHNETS  140 (361)
T ss_pred             Hhcccc-c----ccEEecCHHHHHHHHHHHhhhccCCceEEecCCCC--CCCC-----ccCC-----CCCEEEEcccCCc
Confidence            999743 2    44444444543 3344443  22355555543221  2332     1223     7999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||...|.   ++|   ++++|+++|+|.+.+...     ....+..+           +++ +.|-.|.+ |.+| .++.
T Consensus       141 tG~~~pi---~~I---~~~~g~~~iVDavqs~g~-----~~idv~~~-----------D~~-~~s~~K~l-g~~~-Gl~~  195 (361)
T TIGR01366       141 TGVAVPV---RRP---EGSDDALVVIDATSGAGG-----LPVDIAET-----------DVY-YFAPQKNF-ASDG-GLWL  195 (361)
T ss_pred             cceeccc---ccc---cccCCCeEEEEcCccccC-----CCCCHHHC-----------CEE-EEEchhhc-CCCC-ceEE
Confidence            9999994   444   478999999999988733     22333321           255 45779999 6664 2444


Q ss_pred             EeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc---hhhcccCCCCCCC
Q psy13922        251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT---VMDCVVNPPQPGE  327 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~~~~~~~~~~  327 (509)
                      ++   .++++++++..........+..  .-+...+.             ...+++........   ++..+++      
T Consensus       196 ~~---~s~~~~~~~~~~~~~~~~~p~~--~d~~~~~~-------------~~~~~~t~~tp~i~~i~~l~~al~------  251 (361)
T TIGR01366       196 AI---MSPAALERIEAIAASGRWVPEF--LSLPTAVD-------------NSLKNQTYNTPAIATLALLAEQID------  251 (361)
T ss_pred             EE---ECHHHHhhhhcccCCCCCCchh--hhHHHHHh-------------ccccCCCCCCchHHHHHHHHHHHH------
Confidence            44   5888888776433211110111  00000000             00112222222222   3344432      


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CC---ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHh
Q psy13922        328 PSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQ---GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLE  403 (509)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~  403 (509)
                        |-.....++...++.+++.+++.+.+.++++++.+. ..   ......+.+  +.         |++ ..+ +...|+
T Consensus       252 --~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~--~~---------g~~-~~~-v~~~L~  316 (361)
T TIGR01366       252 --WMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF--VD---------DID-AAT-VAKILR  316 (361)
T ss_pred             --HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC--CC---------ccC-HHH-HHHHHH
Confidence              111110156667888888889999999985555442 11   112122222  12         332 333 455567


Q ss_pred             hcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe
Q psy13922        404 RTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI  483 (509)
Q Consensus       404 ~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~  483 (509)
                      ++||.+.++.  ..                                                -+.+        .||+|+
T Consensus       317 ~~gI~i~~~~--~~------------------------------------------------l~~~--------~vRis~  338 (361)
T TIGR01366       317 ANGIVDTEPY--RK------------------------------------------------LGRN--------QLRVAM  338 (361)
T ss_pred             HCCCeeccCc--cc------------------------------------------------cCCC--------cEEEEc
Confidence            7899986543  11                                                1112        799998


Q ss_pred             e--cChHHHHHHHHHHHHHHHH
Q psy13922        484 L--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       484 ~--~~~~~i~~~~~~l~~~~~~  503 (509)
                      .  ++.++|+.+++.|++++++
T Consensus       339 ~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       339 FPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            8  8999999999999998764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.52  E-value=5.8e-11  Score=126.57  Aligned_cols=275  Identities=11%  Similarity=0.131  Sum_probs=170.2

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCC----------C-CCCcEEEeCCHHHHHHHHHHHhhcCC-----------------
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQP----------A-DWQDVILSAGASDGIKSVLKLLIEDV-----------------  100 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~----------~-~~~~i~~t~G~~~al~~~~~~l~~~g-----------------  100 (509)
                      |..+....++.+.+.+++.+..+..          . ....-++|+|+|+|+-.++...++..                 
T Consensus       121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~  200 (522)
T TIGR03799       121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA  200 (522)
T ss_pred             eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence            5555566889999999998776411          1 11235778999999888777754320                 


Q ss_pred             -----CCCCCeEEEcCCCChhHHHHHHhcCC---EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEE--eCCCCC
Q psy13922        101 -----DGKKPGVLIPIPQYPLYSASLAEFNM---EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI--INPGNP  170 (509)
Q Consensus       101 -----d~~~~~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi--~~p~NP  170 (509)
                           ..++..|+++.-.|.++..++..+|.   +++.+|.+++  +.+|++.|++.|++..+. +++.+.+  +..++.
T Consensus       201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~--g~~d~~~L~~~i~~~~~~-g~~~~~vvataGtt~  277 (522)
T TIGR03799       201 ALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDAN--NRIDVDALRDKCAELAEQ-NIKPLAIVGVAGTTE  277 (522)
T ss_pred             hhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCC--CcCCHHHHHHHHHHHHHC-CCCcEEEEEEecCcC
Confidence                 00234688888999999999998888   7899998764  489999999999754322 3343333  466779


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||.+-|   +++|+++|+++|+++++|.+|+....-    ...+......+    ...+.+++ |.+|.+.|.  ..+|.
T Consensus       278 tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~----~~~~r~~l~gl----e~aDSit~-d~HK~l~~P--~g~G~  343 (522)
T TIGR03799       278 TGNIDP---LDEMADIAQELGCHFHVDAAWGGATLL----SNTYRHLLKGI----ERADSVTI-DAHKQLYVP--MGAGM  343 (522)
T ss_pred             CCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHh----CHHHHHHhcCc----hhCCEEEE-ChhhcCCcC--cccEE
Confidence            999977   999999999999999999999864321    11122222211    12347766 889966333  45677


Q ss_pred             EeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      +++  .++.+.+.+.... .+......     .. +.+            ..++++.+.. +. .+-..+.        +
T Consensus       344 llv--r~~~~~~~~~~~~-~Yl~~~~~-----~d-~~~------------~~legsR~~~-al-~lw~aL~--------~  392 (522)
T TIGR03799       344 VLF--KDPALMSAIEHHA-EYILRKGS-----KD-LGS------------HTLEGSRPGM-AM-LVYAGLH--------I  392 (522)
T ss_pred             EEE--eCHHHHHHhccCc-chhcCCCC-----Cc-ccc------------ceeecCcchH-HH-HHHHHHH--------H
Confidence            754  6777665553210 11100000     00 000            0122222211 11 1222211        0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEE
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYA  372 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~  372 (509)
                      - ....++.+.+...++++++.+.|++.|+++++. ++-+...
T Consensus       393 l-G~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~  434 (522)
T TIGR03799       393 I-GRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLT  434 (522)
T ss_pred             H-hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEE
Confidence            1 122378888899999999999999999999875 4444443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK04311 selenocysteine synthase; Provisional

Probab=99.51  E-value=4.5e-11  Score=125.59  Aligned_cols=203  Identities=13%  Similarity=0.147  Sum_probs=138.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCC-----cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS-----PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~-----~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      +.+.+|+.+++++.+++....  ... |...     .-...+++.+++++    |    .++.+++++++.|+.+++.++
T Consensus        94 g~s~l~~~v~eav~~~~~~~~--~le-~~l~~g~~g~r~~~~e~~lA~l~----G----ae~a~vv~sgtaAl~l~l~~l  162 (464)
T PRK04311         94 GRALLSEAAIEAVTEAARGYS--NLE-YDLATGKRGSRDRALAALLCALT----G----AEDALVVNNNAAAVLLALNAL  162 (464)
T ss_pred             CCCCCCHHHHHHHHHHHhccc--ccc-cchhhcccchHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHh
Confidence            677789999999999987621  111 2211     12246777788777    3    346778888889999888665


Q ss_pred             hcCCCCCCCeEEEcCCCChh------HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPL------YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                       .+|+    +||++...+..      +...++..|++++.++.+.    ..+++.+++++++     ++++|++.+++||
T Consensus       163 -~~Gd----eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~-----~TklV~~vh~sN~  228 (464)
T PRK04311        163 -AAGK----EVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINE-----NTALLLKVHTSNY  228 (464)
T ss_pred             -CCCC----EEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCc-----cCeEEEEEcCCCc
Confidence             6777    99998764442      2345677899999987643    3478999999987     7999999999998


Q ss_pred             --CC--CCCCHHHHHHHHHHHHHCCcEEEEcccCCccc----ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        171 --TG--QVLTKENIQDIIKFAHREKLFLFADEVYQDNV----YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       171 --tG--~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                        +|  ...+   +++|+++|++||+++|+|.+.+.+.    +.-. ..+.+.... +.     +.+++ ++|.+|.+.|
T Consensus       229 ~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~-~~p~~~~~l-~~-----GaDiv-~fSg~K~LgG  297 (464)
T PRK04311        229 RIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP-DEPTVQELL-AA-----GVDLV-TFSGDKLLGG  297 (464)
T ss_pred             cccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCCchhhHH-hc-----CCcEE-EecCcccccC
Confidence              35  3444   9999999999999999999644331    1100 011222211 11     22244 5698999832


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                       |  ..|+++   +++++++++++
T Consensus       298 -p--~~G~i~---g~~~li~~l~~  315 (464)
T PRK04311        298 -P--QAGIIV---GKKELIARLKK  315 (464)
T ss_pred             -C--ceEEEE---EcHHHHHHHhh
Confidence             3  478887   68888887763

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.50  E-value=4.2e-12  Score=124.11  Aligned_cols=154  Identities=22%  Similarity=0.214  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhH----HHHHHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY----SASLAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~----~~~~~~~g~~~~~v  131 (509)
                      ..|.+.|+.+-.   |     -.-+.+++++.|+.+++..+.++||    +|+-..--|.+.    ...++..|.++..+
T Consensus        65 ~vlE~RiAaLEG---G-----~aa~a~aSG~AA~~~ai~~la~aGD----~iVss~~LYGGT~~lf~~tl~~~Gi~v~fv  132 (426)
T COG2873          65 DVLEERIAALEG---G-----VAALAVASGQAAITYAILNLAGAGD----NIVSSSKLYGGTYNLFSHTLKRLGIEVRFV  132 (426)
T ss_pred             HHHHHHHHHhhc---c-----hhhhhhccchHHHHHHHHHhccCCC----eeEeeccccCchHHHHHHHHHhcCcEEEEe
Confidence            678888888763   2     2356678888999999999999999    999887766654    45567889999998


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      ..+       |++.++++|++     ++|+|++..-.||.+.+++   ++.|+++|+++++++|+|..+..-.     -.
T Consensus       133 d~~-------d~~~~~~aI~~-----nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpy-----l~  192 (426)
T COG2873         133 DPD-------DPENFEAAIDE-----NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPY-----LC  192 (426)
T ss_pred             CCC-------CHHHHHHHhCc-----ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcce-----ec
Confidence            643       79999999999     8999999999999999977   9999999999999999999886521     11


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      .++.           +.--|+++|+||...| -|--+|-+++
T Consensus       193 rP~~-----------hGADIVvHS~TK~igG-hGt~iGG~iV  222 (426)
T COG2873         193 RPIE-----------HGADIVVHSATKYIGG-HGTAIGGVIV  222 (426)
T ss_pred             chhh-----------cCCCEEEEeecccccC-CccccceEEE
Confidence            2221           1114668899999954 7777888774

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.49  E-value=4.7e-12  Score=132.96  Aligned_cols=198  Identities=10%  Similarity=0.009  Sum_probs=118.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++++++...   ... ..+.....++.+.+++.+    .   ..+.+++++++++|...+++..+.-..  +..
T Consensus        66 ~p~v~~Ai~~q~~~~---~~~-~~~~~~~~~la~~l~~~~----p---~~~~v~f~~sGseA~e~AlklAr~~tg--r~~  132 (431)
T PRK06209         66 YPPVVEAVREALQDG---CNF-TRPSAIELDAAESFLELI----D---GADMVKFCKNGSDATSAAVRLARAYTG--RDL  132 (431)
T ss_pred             CHHHHHHHHHHHHhC---cCC-CCCCHHHHHHHHHHHHhC----C---ccceEEEecCHHHHHHHHHHHHHHHhC--CCe
Confidence            589999999999873   221 122221123445555443    1   136899999999999999998765432  335


Q ss_pred             EEEc-CCCChhHHHHHH-----hcCCE--EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        107 VLIP-IPQYPLYSASLA-----EFNME--QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       107 Vlv~-~p~y~~~~~~~~-----~~g~~--~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      |+.. .-.|+++.....     ..|..  .......-.   .-|++.|++.++...  .++.+|++...   .|...+++
T Consensus       133 i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~l~~~~--~~~aavi~Epv---~g~~~~~~  204 (431)
T PRK06209        133 VARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR---YNDIASLEALFEDHP--GRIACVILEPA---TADEPQDG  204 (431)
T ss_pred             EEEeccCccccccccccccCCCCCCCChhHhccccccC---CCCHHHHHHHHHhCC--CCEEEEEEccc---cCCCCCHH
Confidence            6654 233332111100     00110  000000000   227899999887521  14666666432   24477889


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      .+++|.++|++||+++|+||++..+.+.+    ...... .++.++        +.+++|.+ | .|+++|.++   .++
T Consensus       205 ~l~~l~~lc~~~g~lLI~DEv~tG~~~~~----~g~~~~-~gv~PD--------i~t~gK~l-g-gG~p~~av~---~~~  266 (431)
T PRK06209        205 FLHEVRRLCHENGALFILDEMITGFRWHM----RGAQKL-YGIVPD--------LSCFGKAL-G-NGFAVSALA---GKR  266 (431)
T ss_pred             HHHHHHHHHHHcCCEEEEEcccccCCcCc----chhhHH-hCCCcc--------eeeehhhh-c-CCcccEEEE---EHH
Confidence            99999999999999999999998774421    111111 112221        34779999 5 789999998   688


Q ss_pred             HHHHH
Q psy13922        259 GVKAM  263 (509)
Q Consensus       259 ~~~~~  263 (509)
                      ++++.
T Consensus       267 ~i~~~  271 (431)
T PRK06209        267 EYMEL  271 (431)
T ss_pred             HHHhh
Confidence            88876

>PRK15029 arginine decarboxylase; Provisional

Probab=99.46  E-value=2.1e-11  Score=133.52  Aligned_cols=206  Identities=12%  Similarity=0.090  Sum_probs=137.5

Q ss_pred             CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEE
Q psy13922         50 TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI  129 (509)
Q Consensus        50 ~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~  129 (509)
                      .|..-..+..+..|+.+    |   .....++++|+|.++..++.+++++||    .|+++-.||.+..+.+...|++++
T Consensus       202 ~p~G~I~eAq~~aA~~f----g---A~~t~FlvNGST~gn~a~i~a~~~~gd----~Vlv~RN~HKSv~~al~L~ga~Pv  270 (755)
T PRK15029        202 DHTGAFGESEKYAARVF----G---ADRSWSVVVGTSGSNRTIMQACMTDND----VVVVDRNCHKSIEQGLILTGAKPV  270 (755)
T ss_pred             CCCcHHHHHHHHHHHHh----C---CCcEEEEeCChhHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHcCCeEE
Confidence            34444455666666666    3   235688999999999999999999999    999999999999999999999999


Q ss_pred             EEecCCCCCC----CCC-----HHHHHHHHHhhhc-----cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEE
Q psy13922        130 GYYLDESKQW----GLP-----ISELERSITEARK-----HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF  195 (509)
Q Consensus       130 ~v~~~~~~~~----~~d-----~~~L~~~i~~~~~-----~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI  195 (509)
                      .++..- ..|    .++     ++.+++++++...     ..+++++++++|+. -|++++   +++|+++|+++++.|+
T Consensus       271 yl~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~ll  345 (755)
T PRK15029        271 YMVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLH  345 (755)
T ss_pred             Eecccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEE
Confidence            986432 122    234     8899999976421     13455899998877 489977   8999999999999999


Q ss_pred             EcccCCc-ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HH-HHHHHHhhh--c
Q psy13922        196 ADEVYQD-NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GV-KAMLHKSIS--A  270 (509)
Q Consensus       196 ~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~-~~~l~~~~~--~  270 (509)
                      +||||+. |.+.+.  ++....+..+... ..+.+++++.|.+|++   |++.-|.++-+..+. .+ .+++.....  .
T Consensus       346 vDEAhGah~~F~~~--~p~~sa~~~~~~~-~~Gad~~vvqStHKtL---~alTQaS~LHv~~~~~~id~~r~~~~l~~~q  419 (755)
T PRK15029        346 FDEAWYGYARFNPI--YADHYAMRGEPGD-HNGPTVFATHSTHKLL---NALSQASYIHVREGRGAINFSRFNQAYMMHA  419 (755)
T ss_pred             EECccccccccCcc--ccccccccccccc-cCCCceEEEEchhhcc---cchhhhhhheeCCCccccCHHHHHHHHHHHc
Confidence            9999954 334321  2111111000000 0122368888999997   567655554333331 11 244544433  2


Q ss_pred             ccCcchh
Q psy13922        271 MLCPTVL  277 (509)
Q Consensus       271 ~~~~~~~  277 (509)
                      +++|+.+
T Consensus       420 STSPSY~  426 (755)
T PRK15029        420 TTSPLYA  426 (755)
T ss_pred             CCCcHHH
Confidence            4455554

>PLN02271 serine hydroxymethyltransferase

Probab=99.46  E-value=4.8e-11  Score=125.01  Aligned_cols=304  Identities=12%  Similarity=0.064  Sum_probs=177.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcccC--CCccc-CCCCcchHHHHHHHHHHHhhhcCCCC-CC-CcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRG--QSVGS-YTDSPGIEIIRRHVAQYISRRDGQPA-DW-QDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~--~~~~~-Y~~~~g~~~lr~~va~~l~~~~g~~~-~~-~~i~~t~G~~~al~~~~~~l   96 (509)
                      ..+..++.+++++-..+...-.  ....+ |+......++.....+...+.+|.+. .. -||-.-+| +.|...++.+|
T Consensus       156 SEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SG-s~AN~aV~~AL  234 (586)
T PLN02271        156 SENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSC-TSANFAVYTGL  234 (586)
T ss_pred             ccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccH-HHHHHHHHHHh
Confidence            4555577777777666655211  11111 34344444555545555555555332 11 46666655 56888999999


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHHH---------HhcCC--EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSASL---------AEFNM--EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~~---------~~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                      ++|||    +|+..+..|.++....         ...|.  ++++++.+++ +..+|.+++++.....    ++|+|++.
T Consensus       235 l~PGD----~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~----rPKLII~g  305 (586)
T PLN02271        235 LLPGD----RIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDF----RPKILICG  305 (586)
T ss_pred             cCCCC----EEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhc----CCeEEEEC
Confidence            99999    9999887777654322         23354  4445556543 3479999999855444    89999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       166 ~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      .-.||  ..++   +++|.++|+++|+++++|.++.......+....++.           +.+++ ..|.+|++.   |
T Consensus       306 ~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-----------~aDvv-t~TTHKtLr---G  365 (586)
T PLN02271        306 GSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-----------YCDIV-TSTTHKSLR---G  365 (586)
T ss_pred             chhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-----------CCcEE-EeCCcccCC---C
Confidence            77777  4555   888899999999999999999775543331111111           22344 558899985   4


Q ss_pred             CeeEEEeeecCCH-------------------HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcc
Q psy13922        246 LRGGYSEVINLDP-------------------GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGC  306 (509)
Q Consensus       246 lr~G~v~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (509)
                      =|.|.+.+  .+.                   ++.+++.+.........+.                   .         
T Consensus       366 PrGG~I~~--r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGph-------------------n---------  415 (586)
T PLN02271        366 PRGGIIFY--RKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPH-------------------N---------  415 (586)
T ss_pred             CCceEEEe--cccccccccCCccccccccccHHHHHHhhcccCCccccChh-------------------H---------
Confidence            45577763  221                   2333332222111100100                   0         


Q ss_pred             cCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHH
Q psy13922        307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAK  385 (509)
Q Consensus       307 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~  385 (509)
                          ...++++.++.         +-...+.....+.+.++...|.+.|.+. |++++. ...+-.++++++        
T Consensus       416 ----~~IAalAvalk---------ea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~--------  473 (586)
T PLN02271        416 ----NHIAALAIALK---------QVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLT--------  473 (586)
T ss_pred             ----HHHHHHHHHHH---------HHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCc--------
Confidence                02233333322         0011113556677778888888888887 888763 334556677775        


Q ss_pred             HhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        386 AKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       386 ~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                        ..|+.  -..+.++|++.||.+.-
T Consensus       474 --~~g~~--G~~ae~~Le~~~I~~Nk  495 (586)
T PLN02271        474 --TLGLT--GKNYEKVCEMCHITLNK  495 (586)
T ss_pred             --ccCCC--HHHHHHHHHHcCeEecc
Confidence              11322  23378999999998854

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.45  E-value=2.5e-12  Score=131.67  Aligned_cols=204  Identities=15%  Similarity=0.136  Sum_probs=131.7

Q ss_pred             CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEE
Q psy13922         50 TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI  129 (509)
Q Consensus        50 ~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~  129 (509)
                      .|..-..+..+..|+.++       .....++++|+|.++..++.+++++||    .|+++-.||.+....+...|++++
T Consensus        63 ~p~G~I~eAe~~aA~~fG-------Ad~t~flvnGsT~g~~a~i~a~~~~gd----~VLv~RN~HkSv~~alil~ga~Pv  131 (417)
T PF01276_consen   63 DPEGIIKEAEELAARAFG-------ADKTFFLVNGSTSGNQAMIMALCRPGD----KVLVDRNCHKSVYNALILSGAIPV  131 (417)
T ss_dssp             TTBTHHHHHHHHHHHHHT-------ESEEEEESSHHHHHHHHHHHHHTTTTC----EEEEETT--HHHHHHHHHHTEEEE
T ss_pred             CCccHHHHHHHHHHHhcC-------CCeEEEEecCchHHHHHHHHHhcCCCC----EEEEcCCcHHHHHHHHHHcCCeEE
Confidence            344444566777777773       234688899999999999999999999    999999999999999999999999


Q ss_pred             EEecCCCCCCC----CCH-----HHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        130 GYYLDESKQWG----LPI-----SELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       130 ~v~~~~~~~~~----~d~-----~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      .++.. ...++    +++     +.+++.+++......+++++|++|+. -|++++   +++|+++|+++++.|++||||
T Consensus       132 yi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAh  206 (417)
T PF01276_consen  132 YIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAH  206 (417)
T ss_dssp             EEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT
T ss_pred             EecCC-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccc
Confidence            99765 32332    455     89999998753211245599998877 499977   999999999999999999998


Q ss_pred             Ccc-cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HHHHHHHHhhh--cccCcch
Q psy13922        201 QDN-VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GVKAMLHKSIS--AMLCPTV  276 (509)
Q Consensus       201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~~~~l~~~~~--~~~~~~~  276 (509)
                      +.. .|. . -+.+...+..+   ..++..++++.|.+|++   +++.-+.++-+..+. --.+++.+...  .+++|+.
T Consensus       207 Gah~~F~-~-lp~~a~~~gad---~~~~~~~~vvqS~HKtL---~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY  278 (417)
T PF01276_consen  207 GAHFGFH-P-LPRSALALGAD---RPNDPGIIVVQSTHKTL---PALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSY  278 (417)
T ss_dssp             -TTGGCS-G-GGTTCSSTTSS----CTSBEEEEEEEHHHHS---SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--H
T ss_pred             cccccCC-C-CccchhhccCc---cccccceeeeechhhcc---cccccceEEEecCCCcccHHHHHHHHHHHcCCChHH
Confidence            653 222 1 11111111111   12244578899999997   566644444334443 23445544333  3455555


Q ss_pred             h
Q psy13922        277 L  277 (509)
Q Consensus       277 ~  277 (509)
                      +
T Consensus       279 ~  279 (417)
T PF01276_consen  279 P  279 (417)
T ss_dssp             H
T ss_pred             H
Confidence            5

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.44  E-value=3.1e-11  Score=126.71  Aligned_cols=175  Identities=10%  Similarity=0.046  Sum_probs=102.7

Q ss_pred             CHHHH--HHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----
Q psy13922         27 PDDVK--QRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----   99 (509)
Q Consensus        27 p~~v~--~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----   99 (509)
                      .|.|.  +++.+++.+....... +. ... .+....+++.+.+..+ .-..+.++++++++||++.+++..+.-     
T Consensus        56 ~p~v~~~~ai~~q~~~~~~~~~~-~~-~~~-~~~~~~l~~~l~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~  131 (431)
T TIGR03251        56 HPALVDDLAFRARLGAAAVNKPS-NS-DVY-TVAMARFVDTFARVLG-DPALPHLFFIEGGALAVENALKTAFDWKSRHN  131 (431)
T ss_pred             ChhhhHHHHHHHHHHHhhhcccc-cC-CCC-CHHHHHHHHHHHHhcC-CCCcCEEEEeCCcHHHHHHHHHHHHHHhhcch
Confidence            46777  7888887762110111 10 011 2222333333332211 112368999999999999999987532     


Q ss_pred             ---CCC--CCCeEEEcCCCChhHHHHHHhc-CCE-EE--EEec-------CCCC--CC-----C-------CCHHHHHHH
Q psy13922        100 ---VDG--KKPGVLIPIPQYPLYSASLAEF-NME-QI--GYYL-------DESK--QW-----G-------LPISELERS  149 (509)
Q Consensus       100 ---gd~--~~~~Vlv~~p~y~~~~~~~~~~-g~~-~~--~v~~-------~~~~--~~-----~-------~d~~~L~~~  149 (509)
                         |.+  ++..|+...-+|++....+... |.. ..  ..|.       .+..  .+     .       -+++.+++.
T Consensus       132 ~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~  211 (431)
T TIGR03251       132 QARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAA  211 (431)
T ss_pred             hhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHH
Confidence               211  1357999999999876544322 211 00  0110       0000  00     0       123445555


Q ss_pred             HHhhhccCCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        150 ITEARKHCNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       150 i~~~~~~~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      +...  ..++.+|++...+.-.|. ..+++.+++|.++|++||+++|+||++.+|..+|
T Consensus       212 ~~~~--~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG  268 (431)
T TIGR03251       212 FAER--PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTG  268 (431)
T ss_pred             HHhC--CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccc
Confidence            5432  127889888766666776 5788999999999999999999999999886653

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.43  E-value=2.5e-11  Score=127.19  Aligned_cols=204  Identities=12%  Similarity=0.135  Sum_probs=136.7

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC-----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD-----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~-----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      +.+.+|+.+++++.+.+....  ... |.-     ..-...+++.++++++        .+..+++++++.|+..++.. 
T Consensus        89 g~s~l~~~vieAv~~~~~~y~--~l~-~~l~~g~~g~r~~~le~~lA~l~g--------ae~alvv~sg~aAi~l~l~~-  156 (454)
T TIGR00474        89 GRAPLAEEAIEAVTDAARGYS--NLE-YDLETGKRGSRYSHVEGLLCELTG--------AEDALVVNNNAAAVLLALNT-  156 (454)
T ss_pred             CCCCCCHHHHHHHHHHHhccc--chh-ccccccccchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHH-
Confidence            667789999999999988722  111 211     1123567888888873        23456677788899888855 


Q ss_pred             hcCCCCCCCeEEEcCCCChh------HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPL------YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                      +.+|+    +|+++...|..      +...++..|++++.++.+.    ..+++.+++++++     ++++|++.+++|+
T Consensus       157 l~~Gd----eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~-----~T~lv~~~h~sN~  223 (454)
T TIGR00474       157 LAKGK----EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITE-----NTALLLKVHTSNY  223 (454)
T ss_pred             hCCcC----EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCc-----CCEEEEEEccCcc
Confidence            56777    99999876432      2345677899999987642    3478999999987     7999999999999


Q ss_pred             C--CC--CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC--CCcccc-HHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        171 T--GQ--VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE--GSKFYS-FKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       171 t--G~--~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      +  |.  ..+   +++|+++|+++|+++++|.+.+.+...+  +....+ +... .+.     +.+ ++++|.+|.+.| 
T Consensus       224 ~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~-~~~-----GaD-iv~fSg~K~LgG-  292 (454)
T TIGR00474       224 RIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEV-IAA-----GVD-LVTFSGDKLLGG-  292 (454)
T ss_pred             cccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccH-hHc-----CCC-EEEecCccccCC-
Confidence            5  63  545   9999999999999999998644321100  000111 1111 111     222 445588999833 


Q ss_pred             CCCeeEEEeeecCCHHHHHHHHH
Q psy13922        244 CGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |  ..|+++   +++++++++++
T Consensus       293 p--~~G~i~---g~~~~i~~l~~  310 (454)
T TIGR00474       293 P--QAGIIV---GKKELIERLKK  310 (454)
T ss_pred             C--eEEEEE---ECHHHHHhhhh
Confidence            3  478887   67788876653

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02263 serine decarboxylase

Probab=99.43  E-value=2.7e-10  Score=118.56  Aligned_cols=180  Identities=12%  Similarity=0.026  Sum_probs=135.1

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEec
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL  133 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~  133 (509)
                      +..++.+.+-+|+.+.+|.+-..-.-++|+|+|+++-.++.+.++...  +..|+++.-.|.++..++..+|.+++.||.
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~--~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~  207 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFP--DGILYASRESHYSVFKAARMYRMECVKVDT  207 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcC--CcEEEEcCCccHHHHHHHHhcCCcceEecc
Confidence            458899999999999888542111358899999999998888776321  226888999999999999999999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc-----EEEEcccCCcccccCC
Q psy13922        134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL-----FLFADEVYQDNVYAEG  208 (509)
Q Consensus       134 ~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i-----~lI~Deay~~~~~~~~  208 (509)
                      ++.  +.+|++.|++.|.+...  ++-+|+.+.+.-++|.+   +++++|.++|+++|+     |+.+|.+|+++...--
T Consensus       208 d~~--g~mD~~aL~~aI~~d~~--~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~  280 (470)
T PLN02263        208 LVS--GEIDCADFKAKLLANKD--KPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFV  280 (470)
T ss_pred             CCC--CcCcHHHHHHHHHhCCC--CcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhc
Confidence            754  58999999999976311  25556668889999999   669999999999996     9999999988754110


Q ss_pred             CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        209 SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                       ...      +..... ...+.|++ +.+|.. | .-...|.+++
T Consensus       281 -~~~------~~~df~-~~vDSIsv-D~HK~l-~-~P~~cgvll~  314 (470)
T PLN02263        281 -KRA------PKVTFK-KPIGSVSV-SGHKFV-G-CPMPCGVQIT  314 (470)
T ss_pred             -ccc------cccCCC-cCccEEEE-CCcccc-C-CCcCEEEEEE
Confidence             000      001100 02457877 889998 4 6678898875

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.42  E-value=2e-10  Score=124.84  Aligned_cols=177  Identities=15%  Similarity=0.143  Sum_probs=121.7

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH-HHhcCCEEEE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS-LAEFNMEQIG  130 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~-~~~~g~~~~~  130 (509)
                      ..-..+..+..|+.+    |   ....-++++|+|.++..++.+++.+||    .||+.-.||-+..+. +...|++++.
T Consensus       173 eG~i~eAq~~AA~~f----g---Ad~tyFlvNGTS~gn~a~i~a~~~~Gd----~VLvdRN~HKSv~hgaLiLsGa~PVY  241 (720)
T PRK13578        173 EGAAKDAQKHAAKVF----N---ADKTYFVLNGTSASNKVVTNALLTPGD----LVLFDRNNHKSNHHGALIQAGATPVY  241 (720)
T ss_pred             ChHHHHHHHHHHHHh----C---CCceEEEeCChhHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHHcCCeEEE
Confidence            333445666666666    3   234678899999999999999999999    999999999999885 8899999999


Q ss_pred             EecCCCCCCC----CCH-----HHHHHHHHhhh-c---c-CCceEEEEeCCCCCCCCCCCHHHHHHHHHH-HHHCCcEEE
Q psy13922        131 YYLDESKQWG----LPI-----SELERSITEAR-K---H-CNPRAIVIINPGNPTGQVLTKENIQDIIKF-AHREKLFLF  195 (509)
Q Consensus       131 v~~~~~~~~~----~d~-----~~L~~~i~~~~-~---~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~i-a~~~~i~lI  195 (509)
                      +....+ .|+    ++.     +.+++.+++.. +   . ...++++|++|+. .|++++   +++|+++ ++.++ .|+
T Consensus       242 l~P~~n-~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~ll  315 (720)
T PRK13578        242 LETARN-PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YIL  315 (720)
T ss_pred             eecccc-ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEE
Confidence            875442 233    354     44888887741 1   1 1258899988876 599988   7888887 67777 999


Q ss_pred             EcccCCcc-cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        196 ADEVYQDN-VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       196 ~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +||+|... .|.+.  +..+....-+.+.+  +.-++++.|.+|.+   +++.-+.++
T Consensus       316 vDEAhgah~~F~p~--~~~~p~~al~~GaD--~p~i~v~QStHKtL---~alTQaS~L  366 (720)
T PRK13578        316 FDSAWVGYEQFIPM--MADCSPLLLELNEN--DPGIFVTQSVHKQQ---AGFSQTSQI  366 (720)
T ss_pred             EeCcchhhhccCcc--cccCChhhhhcCCC--CCCeEEEEChhhcc---hhhhhHhhh
Confidence            99999653 33321  11111111233333  23378889999998   456544433

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.41  E-value=8.9e-11  Score=123.39  Aligned_cols=175  Identities=10%  Similarity=-0.042  Sum_probs=104.3

Q ss_pred             CHHHHHHHHHH-HhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC------
Q psy13922         27 PDDVKQRAQAV-LDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED------   99 (509)
Q Consensus        27 p~~v~~a~~~~-l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------   99 (509)
                      +|.|.+++.++ ....-.. ...|.. ....++-+.+++.+.+...  -.-+.++++++++||++.+++.....      
T Consensus        76 ~p~i~~Ai~~q~~~~~l~~-~~~~~~-~~~~~la~~l~~~l~~~~p--~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r  151 (464)
T TIGR00699        76 NPALLKAAQSPEMATTLIN-RPALGN-FPSKDWAKILKEGILKVAP--KGQDQVWTGMSGSDANELAFKAAFMYYRSKQR  151 (464)
T ss_pred             CHHHHHHHHHHHHHHhhcc-cccCCc-HHHHHHHHHHHHhHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            68899998874 3321111 111221 1113344444432222211  12358999999999999999987421      


Q ss_pred             C-------------------CCCCCeEEEcCCCChhHHHHHHhc-CCE-----------EEEEecCCC-CCCC-------
Q psy13922        100 V-------------------DGKKPGVLIPIPQYPLYSASLAEF-NME-----------QIGYYLDES-KQWG-------  140 (509)
Q Consensus       100 g-------------------d~~~~~Vlv~~p~y~~~~~~~~~~-g~~-----------~~~v~~~~~-~~~~-------  140 (509)
                      +                   ++++..||....+|++....+... |..           +..+|.... ..+.       
T Consensus       152 ~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~  231 (464)
T TIGR00699       152 GYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENA  231 (464)
T ss_pred             CcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccch
Confidence            0                   001337999999999876554332 211           111111100 0000       


Q ss_pred             ----CCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        141 ----LPISELERSITEARKHCNPRAIVIINPGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       141 ----~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                          -+++.+++.++...  .++.+|++.......|... +++.+++|.++|++||+++|.||++..|..+|
T Consensus       232 ~~~~~~l~~l~~~l~~~~--~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG  301 (464)
T TIGR00699       232 KEEQRCLEEVEDLIKKWH--KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATG  301 (464)
T ss_pred             hHHHHHHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCc
Confidence                13556777776421  2588888876666678754 79999999999999999999999999886643

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.40  E-value=2.6e-10  Score=116.37  Aligned_cols=354  Identities=16%  Similarity=0.137  Sum_probs=209.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~~  105 (509)
                      .+..++++..       +.-. |+.+.....|.+.+++++.        .+.++.|..++.+-..+++.+++ +|+    
T Consensus        56 S~~m~aAM~~-------GDD~-Y~gdpSv~~Lee~vael~G--------~E~alpthqGRgaE~Il~~~~~~~~g~----  115 (467)
T TIGR02617        56 TQSMQAAMMR-------GDEA-YSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQ----  115 (467)
T ss_pred             CHHHHHHHHc-------CCcc-cccCchHHHHHHHHHHHhC--------CceEEECCCCchHHHHHHHhhcccccc----
Confidence            4556666654       2222 8777777999999999983        45688887778999999999988 555    


Q ss_pred             eEEEcC--------CCChhHHHHHHhcCCEEEEEecC--------CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922        106 GVLIPI--------PQYPLYSASLAEFNMEQIGYYLD--------ESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus       106 ~Vlv~~--------p~y~~~~~~~~~~g~~~~~v~~~--------~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      .+++..        -.|......+...|+.+..++.+        ...+..+|++.|+++|++.... ++..+.+.--+|
T Consensus       116 e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~-~i~~v~~tlt~N  194 (467)
T TIGR02617       116 EKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN-NVPYIVATITCN  194 (467)
T ss_pred             cccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC-CceeeeeeEEEe
Confidence            555332        22333345677889988876532        1112368999999999864211 344444322234


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-ccc-----cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        170 -PTGQVLTKENIQDIIKFAHREKLFLFADEVYQD-NVY-----AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       170 -PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                       -.|+++|.+.++++.++|++||+.++.|.+=.. ..+     +......++.++..++..   ..+.+++ |+||.+ |
T Consensus       195 ~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~---~aDsvt~-slsKgl-g  269 (467)
T TIGR02617       195 SAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK---YADMLAM-SAKKDA-M  269 (467)
T ss_pred             cCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc---cCCEEEE-EcCCCC-C
Confidence             357899999999999999999999999975211 111     111134667777655543   3347777 999976 4


Q ss_pred             CCCCeeEEEeeecCCH---HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcc
Q psy13922        243 ECGLRGGYSEVINLDP---GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV  319 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  319 (509)
                         .++|.+++ +.++   ++..+++...-.+-+..+.|..+..                            -..|++..
T Consensus       270 ---ApvGg~La-g~d~~~~~l~~~~~~~~i~~EGf~tYGGlagr----------------------------d~ea~a~G  317 (467)
T TIGR02617       270 ---VPMGGLLC-FKDDSFFDVYTECRTLCVVQEGFPTYGGLEGG----------------------------AMERLAVG  317 (467)
T ss_pred             ---CcccceEE-ecchhHHHHHHHHHhhcccccCCcCcCchhHH----------------------------HHHHHHhh
Confidence               46666653 3566   4444444433333344444333321                            23333333


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCC--CCHHHHHHHhhcCCCCcHHH
Q psy13922        320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK--LPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~  397 (509)
                      +.         +..   -+.....-....++|.+.|.+. |+.+.. .||--++++..  +|.     +.. ..-+...+
T Consensus       318 l~---------e~~---~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~lph-----ip~-~~fpa~al  377 (467)
T TIGR02617       318 LY---------DGM---NLDWLAYRINQVQYLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLPH-----IPA-DQFPAHAL  377 (467)
T ss_pred             hh---------hcc---cHHHHHHHHHHHHHHHHHHHhC-CCcEEe-cCccEEEEehhhhCCC-----CCh-hhCcHHHH
Confidence            32         111   1222233334456777777777 888877 88877776653  111     000 11245556


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +.++..+.||-..--..+...                           ..                  +..+....+.--
T Consensus       378 ~~~ly~~~GiR~~e~G~~~~~---------------------------rd------------------~~~~~~~~~~~e  412 (467)
T TIGR02617       378 ACELYKVAGIRAVEIGSLLLG---------------------------RD------------------PKTGKQLPCPAE  412 (467)
T ss_pred             HHHHHHHcCcceEeecceecc---------------------------cC------------------CCCCccCCCccc
Confidence            778888889865432222110                           00                  111111112223


Q ss_pred             eEEEEee---cChHHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTIL---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       478 ~~Rls~~---~~~~~i~~~~~~l~~~~~~  503 (509)
                      .+||.+-   -|.+.++-.+++|..+.++
T Consensus       413 l~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       413 LLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             eeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            7999988   5888898888888888764

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.39  E-value=7.8e-11  Score=121.08  Aligned_cols=196  Identities=16%  Similarity=0.194  Sum_probs=136.5

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCC-----CCcEEEeCCHHHHHHHHHHHhhc--------CCC--CCCCeEEEcCCC
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPAD-----WQDVILSAGASDGIKSVLKLLIE--------DVD--GKKPGVLIPIPQ  113 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~--------~gd--~~~~~Vlv~~p~  113 (509)
                      |.......++.+.+.+++.+.+|.+..     ...-++|+|+|+++..++.+.++        .+.  ..+..|++++-.
T Consensus        71 ~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a  150 (373)
T PF00282_consen   71 WEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA  150 (373)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS
T ss_pred             cccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence            555566789999999999999887621     24678999999999888766542        121  012357777778


Q ss_pred             ChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCce-EEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc
Q psy13922        114 YPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR-AIVIINPGNPTGQVLTKENIQDIIKFAHREKL  192 (509)
Q Consensus       114 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~-~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i  192 (509)
                      |.+...++..+|..++.||.+++  +.+|++.|++.+++......+. +|+.+.....+|.+   +++++|+++|+++|+
T Consensus       151 H~S~~Kaa~~lGlg~~~I~~~~~--~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~---D~l~~i~~i~~~~~~  225 (373)
T PF00282_consen  151 HYSIEKAARILGLGVRKIPTDED--GRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI---DPLEEIADICEKYNI  225 (373)
T ss_dssp             -THHHHHHHHTTSEEEEE-BBTT--SSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB----SHHHHHHHHHHCT-
T ss_pred             ccHHHHhcceeeeEEEEecCCcc--hhhhHHHhhhhhcccccccccceeeeccCCCcccccc---cCHHHHhhhccccce
Confidence            99999999999999999999874  5899999999998754322333 55567889999999   779999999999999


Q ss_pred             EEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       193 ~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |+.+|.+|+...+-.. .....   ...+    +..+.|.+ +++|.+ + .-...|++++  .++....
T Consensus       226 wlHVDaA~gg~~~~~~-~~~~~---~~gi----~~adSit~-d~HK~l-~-~P~~~~~~l~--r~~~~l~  282 (373)
T PF00282_consen  226 WLHVDAAYGGSALLSP-EYRHL---LFGI----ERADSITI-DPHKWL-G-VPYGCGVLLV--RDKSDLR  282 (373)
T ss_dssp             EEEEEETTGGGGGGHC-TTGGG---GTTG----GGESEEEE-ETTTTT-S--SSS-EEEEE--SSGGGHH
T ss_pred             eeeecccccccccccc-ccccc---cccc----cccccccc-chhhhh-c-CCccceeEEe--ecccchH
Confidence            9999999988332111 11111   1111    13457877 889998 5 5568888875  7776544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.39  E-value=2.3e-10  Score=127.20  Aligned_cols=217  Identities=12%  Similarity=0.039  Sum_probs=134.5

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-----CC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-----DV  100 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~g  100 (509)
                      -.+.+.+++.+++.+..   +.  ....-..+....+|+.|.+..+.+ .-+.|++++++++|++.+++..++     .|
T Consensus       383 ~~p~I~~Ai~~Qa~rl~---hv--~~~~~~hepa~~LAe~L~~~~~~~-~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G  456 (817)
T PLN02974        383 LQPELARAVAYAAGRYG---HV--MFPENVHEPALRAAELLLGGPGKG-WASRVFFSDNGSTAIEVALKMAFRKFIVDHG  456 (817)
T ss_pred             CCHHHHHHHHHHHhhCC---cc--ccCccCCHHHHHHHHHHHhccCCC-CCCEEEECCchHHHHHHHHHHHHHHHHHhcC
Confidence            36889999999998832   11  111111344555666664421100 135899999999999999987732     12


Q ss_pred             CC------------CCCeEEEcCCCChhHHHHHHhcCCEE-------EE--------E--ecC--CCC--------C---
Q psy13922        101 DG------------KKPGVLIPIPQYPLYSASLAEFNMEQ-------IG--------Y--YLD--ESK--------Q---  138 (509)
Q Consensus       101 d~------------~~~~Vlv~~p~y~~~~~~~~~~g~~~-------~~--------v--~~~--~~~--------~---  138 (509)
                      .+            .+.+||....+|++....+...+...       .+        +  |..  ..+        .   
T Consensus       457 ~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~  536 (817)
T PLN02974        457 FLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSS  536 (817)
T ss_pred             CCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccc
Confidence            11            25579999999998654444332210       00        1  000  000        0   


Q ss_pred             --------CC-----CC------------HHHHHHHHHhhh---ccCCceEEEEeC-CCCCCCC-CCCHHHHHHHHHHHH
Q psy13922        139 --------WG-----LP------------ISELERSITEAR---KHCNPRAIVIIN-PGNPTGQ-VLTKENIQDIIKFAH  188 (509)
Q Consensus       139 --------~~-----~d------------~~~L~~~i~~~~---~~~~~~~ivi~~-p~NPtG~-~~s~~~l~~l~~ia~  188 (509)
                              |.     +|            .+.+++.+++..   ...++.+||+.. .+.-.|. ..+++.+++|.++|+
T Consensus       537 ~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~  616 (817)
T PLN02974        537 GLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCR  616 (817)
T ss_pred             cccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHH
Confidence                    00     00            245666665311   113677888765 3677787 567899999999999


Q ss_pred             HCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       189 ~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                      +||+++|.||++.+|...|.  ......+  ++.++        +-+++|.++  .| +++|.++   .++++.+.+.
T Consensus       617 ~~gilLI~DEV~TGfGRtG~--~fa~e~~--gv~PD--------Ii~~gKgLt--gG~~Plaa~l---~~~~I~~~f~  677 (817)
T PLN02974        617 SRKIPVIFDEVFTGLWRLGV--ESAWELL--GCKPD--------IACYAKLLT--GGLVPLAATL---ATEEVFEAFR  677 (817)
T ss_pred             HhCCEEEEeecccCCCcccc--hhhHHhc--CCCCC--------EEeeccccc--CCCCccEEEE---EcHHHHHhhc
Confidence            99999999999999977652  3222221  22222        346699994  79 6999998   7999999885

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.37  E-value=2.9e-10  Score=128.49  Aligned_cols=146  Identities=18%  Similarity=0.216  Sum_probs=106.8

Q ss_pred             cccCCC---CcchHHHHHHHHHHHhhhcCCCCCCCcEEEe-CCHHHHHHHHHHHhh----cCCCCCCCeEEEcCCCChhH
Q psy13922         46 VGSYTD---SPGIEIIRRHVAQYISRRDGQPADWQDVILS-AGASDGIKSVLKLLI----EDVDGKKPGVLIPIPQYPLY  117 (509)
Q Consensus        46 ~~~Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t-~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~p~y~~~  117 (509)
                      ++-|.|   .+|..++...+.+++.+..|.+    ++-+. +|++++....+.+++    ++|+.+++.|+++...|...
T Consensus       528 ~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~sn  603 (954)
T PRK05367        528 LHPFAPAEQAAGYRELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTN  603 (954)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhh
Confidence            334555   3567788888888888877732    45554 455555533333333    45654566799999999888


Q ss_pred             HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEc
Q psy13922        118 SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD  197 (509)
Q Consensus       118 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~D  197 (509)
                      ...+...|.+++.++.+.++  .+|++.|++.++...  .++.+|++++|++-++...+   +++|+++|+++|+++++|
T Consensus       604 p~sa~~~G~~vv~v~~d~~G--~iD~~~L~~~i~~~~--~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VD  676 (954)
T PRK05367        604 PASAVMAGMKVVVVACDENG--NIDLDDLRAKAEEHA--DNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLD  676 (954)
T ss_pred             HHHHHHCCCEEEEECCCCCC--CcCHHHHHHHHhccC--CCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEE
Confidence            88889999999999987553  789999999997521  15778888888876444444   999999999999999999


Q ss_pred             ccCCc
Q psy13922        198 EVYQD  202 (509)
Q Consensus       198 eay~~  202 (509)
                      .++..
T Consensus       677 gA~~~  681 (954)
T PRK05367        677 GANMN  681 (954)
T ss_pred             CcChh
Confidence            99964

>KOG1404|consensus

Probab=99.37  E-value=6e-11  Score=116.65  Aligned_cols=225  Identities=16%  Similarity=0.166  Sum_probs=144.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|+|.+++.+.+... +.+...|.... ..++.++++..+-      -+-..++++++++||.+++++..+.-..  .-.
T Consensus        68 hP~v~~a~~kQl~~l-~H~t~~~~~~p-i~~~Ae~L~s~~P------~~l~~vfF~nsGsEANelal~mar~Yt~--~~d  137 (442)
T KOG1404|consen   68 HPDVVAAAVKQLKKL-YHTTSGYLNPP-IHDLAEALVSKLP------GDLKVVFFVNSGSEANELALKMARLYTG--NLD  137 (442)
T ss_pred             ChHHHHHHHHhhhhh-EEeeccccCCc-HHHHHHHHHHhCC------CCceEEEEecCCchHHHHHHHHHHHhcC--Cce
Confidence            477888887777553 23333454332 2667777777662      2334699999999999999887754322  115


Q ss_pred             EEEcCCCChhHHHHHHhc-CCEEEEEecC-----------CC---CCCCCC---------HHHHHHHHHhhhccCCceEE
Q psy13922        107 VLIPIPQYPLYSASLAEF-NMEQIGYYLD-----------ES---KQWGLP---------ISELERSITEARKHCNPRAI  162 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~-----------~~---~~~~~d---------~~~L~~~i~~~~~~~~~~~i  162 (509)
                      ||-...+|++.......+ |......+..           ++   +-|+=+         .+++++.+..... ..+.++
T Consensus       138 iIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~-~~vAaf  216 (442)
T KOG1404|consen  138 IIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGP-ETVAAF  216 (442)
T ss_pred             EEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCC-CceeEE
Confidence            777777887755443222 2222111110           10   111111         2445555544322 246677


Q ss_pred             EEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHH--HHHHhCCCCCCceeEEEEecccc
Q psy13922        163 VIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK--VLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       163 vi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +....+...|+ .+++-.+++..++|+++|.+.|.||++..|...|  .+.++.+  +.||            +-|++|.
T Consensus       217 iaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG--~~wgfe~h~v~PD------------IvTmAKg  282 (442)
T KOG1404|consen  217 IAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG--HMWGFESHGVVPD------------IVTMAKG  282 (442)
T ss_pred             EeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc--ccccccccCCCcc------------HHHHHhh
Confidence            77777887786 7888999999999999999999999999998876  4555543  2333            4488999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh--cccCcchhhhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS--AMLCPTVLALVS  281 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~  281 (509)
                      + | .|.++|.++   -.+++.+.+.+-.+  .+.+.++.++++
T Consensus       283 i-G-nG~Pl~AVv---tt~EIa~v~~~~~~~fnTyggnP~a~av  321 (442)
T KOG1404|consen  283 I-G-NGFPLGAVV---TTPEIADVLNQKSSHFNTYGGNPVACAV  321 (442)
T ss_pred             c-c-CCCcceeee---cCHHHHHHHHhccccccccCCCchhHHH
Confidence            9 7 899999998   69999999977653  334444443333

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.37  E-value=1.5e-10  Score=118.24  Aligned_cols=300  Identities=17%  Similarity=0.151  Sum_probs=167.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCC----cEEEeCCHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ----DVILSAGASDGIKSVLK   94 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~----~i~~t~G~~~al~~~~~   94 (509)
                      ..+..++.+++++...+...-...   ..-|+...-..++.+...+...+.++  .+++    +|-. -+++.|...++.
T Consensus        28 SEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~--~~~~~w~anvqp-~SGs~An~av~~  104 (399)
T PF00464_consen   28 SENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG--AEPKEWYANVQP-HSGSQANLAVYM  104 (399)
T ss_dssp             T-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE----SSHHHHHHHHHH
T ss_pred             cccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC--CCcccceEEeec-CCchHHHHHHHH
Confidence            444456666666655554411110   01133344444555555555555555  3333    3333 455678889999


Q ss_pred             HhhcCCCCCCCeEEEcCCCChhHHH---H--H-----HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEE
Q psy13922         95 LLIEDVDGKKPGVLIPIPQYPLYSA---S--L-----AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus        95 ~l~~~gd~~~~~Vlv~~p~y~~~~~---~--~-----~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                      +|+++||    +|+..++.+.++..   .  .     .....+.+.++++++ +..+|.+++++.+.+.    +|++|++
T Consensus       105 aLl~pGD----~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~----kPklIi~  175 (399)
T PF00464_consen  105 ALLKPGD----TIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEH----KPKLIIC  175 (399)
T ss_dssp             HHT-TT-----EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH------SEEEE
T ss_pred             HHHhhcC----cEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhc----CCCEEEE
Confidence            9999999    99988876654431   1  1     224578999998865 4689999999999988    9999998


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        165 INPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       165 ~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      ..-+.|  ..   -+++++.+||++.|.+|++|-++.....-++ .+++...          ..+++ .+|.+|++   +
T Consensus       176 G~S~y~--~~---~d~~~~reIad~vga~l~~D~sH~~GLIa~g-~~~~P~~----------~ADvv-t~sThKtl---~  235 (399)
T PF00464_consen  176 GASSYP--RP---IDFKRFREIADEVGAYLMADISHIAGLIAGG-LFPNPFP----------YADVV-TGSTHKTL---R  235 (399)
T ss_dssp             E-SSTS--S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTT-SS--GCC----------TSSEE-EEESSGGG----
T ss_pred             Cchhcc--Cc---cCHHHHHHHHHhcCcEEEecccccccceehh-eecCccc----------cceEE-Eeeccccc---c
Confidence            644443  22   3489999999999999999999854333222 1221111          22355 55889998   5


Q ss_pred             CCeeEEEeeecC-------------CHHHHHHHHHhhhccc--CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        245 GLRGGYSEVINL-------------DPGVKAMLHKSISAML--CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       245 Glr~G~v~~~~~-------------~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      |=|.|.+++  .             ++++.+++.+......  ++...                                
T Consensus       236 GPrggiI~~--~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~--------------------------------  281 (399)
T PF00464_consen  236 GPRGGIILT--NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMH--------------------------------  281 (399)
T ss_dssp             SSS-EEEEE--S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HH--------------------------------
T ss_pred             ccCceEEEE--cCCccccCCcccccHHHHHHHhccccCCCcccCcchh--------------------------------
Confidence            667898874  3             3889999987654322  22222                                


Q ss_pred             ccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhh
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                        ..++++.++.         +....+.++..+.+.++.+.|.+.|.+. |+++.. ...+-.+|++++-          
T Consensus       282 --~iaalAval~---------ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~----------  339 (399)
T PF00464_consen  282 --RIAALAVALK---------EALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRS----------  339 (399)
T ss_dssp             --HHHHHHHHHH---------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGG----------
T ss_pred             --HHHHHHHHHh---------cccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecc----------
Confidence              2222222221         1111124566777788888889999888 998873 3344566777751          


Q ss_pred             cCCCCcHHHHHHHHhhcCeEEec
Q psy13922        389 EGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       389 ~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      .|+  +-..+...|++.||.+..
T Consensus       340 ~~~--~g~~a~~~Le~~gI~vnk  360 (399)
T PF00464_consen  340 FGI--DGKEAEKALEEAGIIVNK  360 (399)
T ss_dssp             GTS---HHHHHHHHHHTTEE-EE
T ss_pred             ccc--chHHHHHHHHhcCeeecc
Confidence            122  222268899999999864

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>KOG1402|consensus

Probab=99.36  E-value=5e-11  Score=114.54  Aligned_cols=255  Identities=12%  Similarity=0.137  Sum_probs=163.0

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc------
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE------   98 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------   98 (509)
                      +..|.+++++++..++....+-..|....  .++.+-+++++        ..+.|+-++.+.||.+.+++..++      
T Consensus        75 hchpki~~aLqeq~~kLtlssrafYnd~~--~~f~~~vt~lf--------~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K  144 (427)
T KOG1402|consen   75 HCHPKIIKALQEQADKLTLSSRAFYNDVL--GEFAEYVTKLF--------GYDKVLPMNTGAEAVETACKLARKWGYRKK  144 (427)
T ss_pred             CCCHHHHHHHHHHHhHhhhhhHHHhhhhH--HHHHHHHHHhc--------CcceeeecccchhHHHHHHHHHHHHHHhhc
Confidence            44689999999888874322223355443  45666666665        356777787779999999988763      


Q ss_pred             --CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEe----cCCC----CCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         99 --DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY----LDES----KQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        99 --~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~----~~~~----~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                        |.+  +..|+-...+|++-...+-.++-+...+.    .-+.    -. -=|.+.|+.+++..    +.+++++..-+
T Consensus       145 ~ip~n--ka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~-Y~d~eale~~l~~~----~vaaFivEPIQ  217 (427)
T KOG1402|consen  145 NIPKN--KAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVP-YGDAEALEVALKSP----NVAAFIVEPIQ  217 (427)
T ss_pred             cCCcc--ceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeec-cCCHHHHHHHhcCC----CeeEEEeeccc
Confidence              212  22444455666643322211111110000    0000    00 01688999998874    78888888778


Q ss_pred             CCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC-
Q psy13922        169 NPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL-  246 (509)
Q Consensus       169 NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl-  246 (509)
                      ...|+ +.++..+.+..++|++||+++|.||++.++..+|.--......+.||         ++.+   .|.++  .|+ 
T Consensus       218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PD---------ivil---gKalS--GG~~  283 (427)
T KOG1402|consen  218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPD---------IVIL---GKALS--GGVY  283 (427)
T ss_pred             cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCC---------eEEE---ecccc--CCee
Confidence            99997 55667999999999999999999999999988763211122233222         5544   79996  554 


Q ss_pred             eeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCC
Q psy13922        247 RGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQP  325 (509)
Q Consensus       247 r~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  325 (509)
                      ++..++   ++.+++-.+..... .+.+.+++++.+                              +.++++.+.     
T Consensus       284 Pvsavl---~~~~im~~~~pgeHgsTyggNpLg~~v------------------------------aiAalevi~-----  325 (427)
T KOG1402|consen  284 PVSAVL---ADDDIMLNIKPGEHGSTYGGNPLGCAV------------------------------AIAALEVIV-----  325 (427)
T ss_pred             eeEEEE---ecHHHHhccCCCccccccCCChHHHHH------------------------------HHHHHHHHH-----
Confidence            888888   79999988776555 345667774444                              455555442     


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13922        326 GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE  359 (509)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  359 (509)
                                 -+.+.+....+-+.+...|.+++
T Consensus       326 -----------eekL~era~~lG~~l~~~L~~l~  348 (427)
T KOG1402|consen  326 -----------EEKLVERAAKLGEILRDQLNKLQ  348 (427)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHhcc
Confidence                       35566677777778888888764

>PLN02452 phosphoserine transaminase

Probab=99.35  E-value=2.9e-10  Score=116.31  Aligned_cols=305  Identities=14%  Similarity=0.092  Sum_probs=174.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCC-----CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQ-----SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~-----~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      |+..+|+.|++++.+.+.+..+.     ..++.++  -..++.+.+.+.+.+.++.+-+.+-+++..|+|.++++++..|
T Consensus        14 GP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~--~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl   91 (365)
T PLN02452         14 GPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGK--EFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNL   91 (365)
T ss_pred             CCCCCCHHHHHHHHHHHhcccccCccccccCCCch--HHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhc
Confidence            66678999999998876542211     1222332  2245666666666666664323334667799999999999999


Q ss_pred             hcCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      ..+++    ++++..-...+  +...++..|...+.... +..+|  .+++++++.  .     ++++.+.+++-.-.||
T Consensus        92 ~~~~~----~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~--~-----~~~~~v~~~hnETstG  159 (365)
T PLN02452         92 CKPGD----KADFVVTGSWSKKAAKEAKKYCKTNVIASG-KDEKYTKIPSVSEWEL--T-----PDAKFVHICANETIHG  159 (365)
T ss_pred             CCCCC----eEEEEECCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCCChHHcCC--C-----CCCcEEEECCCCCCCc
Confidence            98887    77766555544  45667778864443321 12222  356665421  1     2578888887788889


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +.+++  ++++.      ++++|+|.+.+...     ....+..+           .+++ .|..|.+ |++|  +|.++
T Consensus       160 v~~~~--~~~i~------~~~lvVDa~Ss~g~-----~pidv~~~-----------~v~~-~saqK~l-GP~G--l~~v~  211 (365)
T PLN02452        160 VEFKD--YPDVG------NVPLVADMSSNFLS-----KPVDVSKY-----------GVIY-AGAQKNV-GPSG--VTIVI  211 (365)
T ss_pred             EecCc--ccccC------CCeEEEECCccccC-----cccCHHHc-----------CEEE-Eeccccc-CCCC--eEEEE
Confidence            96442  44443      38999999887643     22333332           1444 4889999 8998  46665


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                         .++++++++....     ++.. ...  ...++..+.             .++...+..++...++        |-.
T Consensus       212 ---vr~~~l~~~~~~~-----~~~~-~~~--~~~~~~s~~-------------~TP~v~~i~~l~~aL~--------~l~  259 (365)
T PLN02452        212 ---IRKDLIGNARPIT-----PGML-DYK--IHAENDSLY-------------NTPPCFGIYMCGLVFE--------DLL  259 (365)
T ss_pred             ---EcHHHHhhcccCC-----Cchh-hHH--HHHhcCCcc-------------CChhHHHHHHHHHHHH--------HHH
Confidence               4777776653211     0000 000  000000000             0111114444444433        111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ee-ccC--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeE
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGM-SC-NPV--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGIC  408 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~-~~~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~  408 (509)
                      -...++.+.++.+++.+++++.|++.+|+ .. ..+  .+.+.+.+.+.            +....++ ..+.++++|+.
T Consensus       260 ~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~------------~~~~~~~-f~~~~~~~g~~  326 (365)
T PLN02452        260 AQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLG------------GSELEAE-FVKEAAKAGMV  326 (365)
T ss_pred             HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcC------------CchhHHH-HHHHHHHCCCc
Confidence            11127788899999999999999987676 11 111  24444444443            1122344 46778889999


Q ss_pred             EecCC
Q psy13922        409 IVPGA  413 (509)
Q Consensus       409 v~pg~  413 (509)
                      ..+|.
T Consensus       327 ~~~G~  331 (365)
T PLN02452        327 QLKGH  331 (365)
T ss_pred             ccCCc
Confidence            99877

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.35  E-value=2.2e-11  Score=123.91  Aligned_cols=228  Identities=12%  Similarity=0.072  Sum_probs=139.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh------cCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI------EDV  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~------~~g  100 (509)
                      +|.+.+++.+++....   +.  .......+...++++.+.+..+  -..+.+++++++++|++.+++..+      ...
T Consensus        34 ~p~i~~ai~~~~~~~~---~~--~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~  106 (339)
T PF00202_consen   34 HPEIAEAIAEQANKLN---YV--SFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGSEAVEAALKLARQYHNKRAYT  106 (339)
T ss_dssp             -HHHHHHHHHHHHHCS---SC--STTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             ccccchhHHHHhhhcc---cc--cccceeccchhhhhhhhhhccc--cccceeeeccCchHHHHHHHHHhhccccccccc
Confidence            4899999999988832   21  1122224456666666666542  145689999999999999999987      322


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhc-------------CCEEEEEecCCCCC---CCCCHHHHHHHHHhhhccCCceEEEE
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEF-------------NMEQIGYYLDESKQ---WGLPISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~---~~~d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                        .+..|+....+|++........             ...+..+|.+....   +.-..+.+++.+..... .++.+|++
T Consensus       107 --~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iaaviv  183 (339)
T PF00202_consen  107 --GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNA-DEIAAVIV  183 (339)
T ss_dssp             --TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHG-GGEEEEEE
T ss_pred             --CCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcC-CcEEEEEE
Confidence              2558999999999855432221             11234455432100   00001123333332211 26788888


Q ss_pred             eCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        165 INPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       165 ~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      ...+.-.|. .++++.+++|.++|++||+++|.||++..|...+  ++.....  .++.++     ++   +++|.++  
T Consensus       184 EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG--~~~a~~~--~gv~PD-----iv---~~gK~l~--  249 (339)
T PF00202_consen  184 EPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG--KFFASEH--YGVDPD-----IV---TFGKGLG--  249 (339)
T ss_dssp             ESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS--SSSGHHH--HTSSSS-----EE---EEEGGGG--
T ss_pred             eccccccCccccccchhhehcccccccccceecccccccccccC--Cccceec--ccccCc-----cc---ccccchh--
Confidence            655555665 6678899999999999999999999999997665  2333333  233333     44   5589995  


Q ss_pred             CCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        244 CGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                      .|+++|.++   .++++.+.+..... .+...+.+++++
T Consensus       250 gG~p~sav~---~~~~i~~~~~~~~~~~T~~g~p~~~aa  285 (339)
T PF00202_consen  250 GGLPISAVL---GSEEIMEAFQPGSHGSTFGGNPLSCAA  285 (339)
T ss_dssp             TTSSEEEEE---EEHHHHTTSCTTSSTCTTTT-HHHHHH
T ss_pred             hhhhccccc---ccchhhccccccccccccccchHhhhh
Confidence            789999998   68888887743322 233444443333

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.34  E-value=3.5e-10  Score=122.82  Aligned_cols=175  Identities=14%  Similarity=0.086  Sum_probs=120.1

Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEE
Q psy13922         51 DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIG  130 (509)
Q Consensus        51 ~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~  130 (509)
                      +..-..+..+..|+.++       ....-++++|+|.++..++.+++.+||    .|++.-.||-+..+.+...|++++.
T Consensus       193 ~~G~i~eAe~~AA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd----~VLvdRN~HKSv~haLilsga~PVY  261 (714)
T PRK15400        193 HSGPHKEAEEYIARVFN-------ADRSYMVTNGTSTANKIVGMYSAPAGS----TVLIDRNCHKSLTHLMMMSDVTPIY  261 (714)
T ss_pred             CChHHHHHHHHHHHHhC-------CCcEEEEeCchHHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHcCCeEEE
Confidence            33334456666666663       224678899999999999999999999    9999999999999999999999999


Q ss_pred             EecCCCCCCC----CC-----HHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        131 YYLDESKQWG----LP-----ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       131 v~~~~~~~~~----~d-----~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ++...+ .|+    ++     .+.+++.+++..+..++.+++|++|+. .|.+++   ++.|+++|+.++  |++||||.
T Consensus       262 l~P~rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwg  334 (714)
T PRK15400        262 FRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWV  334 (714)
T ss_pred             eccccc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccch
Confidence            865432 332    34     899999998753322344788888844 699988   677778887777  68999996


Q ss_pred             cc-cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        202 DN-VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       202 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      .. .+.+.  +++...+.  .+.+ ++.-++++.|.+|.+   +++.-+.+
T Consensus       335 ah~~F~p~--~~~~sam~--~ga~-~~~~i~vtQStHKtL---~alTQaS~  377 (714)
T PRK15400        335 PYTNFSPI--YEGKCGMS--GGRV-EGKVIYETQSTHKLL---AAFSQASM  377 (714)
T ss_pred             hhhccCcc--cCCcChhh--cCCC-CCCceEEEEchhhcc---cchhHHhH
Confidence            54 33321  11111111  1111 012268888999998   45543333

>KOG2862|consensus

Probab=99.33  E-value=1.6e-09  Score=103.64  Aligned_cols=204  Identities=15%  Similarity=0.207  Sum_probs=140.7

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |+..+|+.|++++..-.       .++-.|  .+-+.++++-+...|..     ..+.-.++...++.+.+.++..+..|
T Consensus        24 GPsnl~~~V~~A~~~~~-------lgh~sPe~~qIm~~v~egikyVFkT-----~n~~tf~isgsGh~g~E~al~N~leP   91 (385)
T KOG2862|consen   24 GPSNLSGRVQEAMSRPS-------LGHMSPEFVQIMDEVLEGIKYVFKT-----ANAQTFVISGSGHSGWEAALVNLLEP   91 (385)
T ss_pred             CCcCCCHHHHHhhcCCc-------cccCCHHHHHHHHHHHHHHHHHhcc-----CCCceEEEecCCcchHHHHHHhhcCC
Confidence            45557888877763322       221122  12334455555555432     23445777777789999999999999


Q ss_pred             CCCCCCeEEEcC-CCCh-hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPI-PQYP-LYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~-p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ||    .|++.. -.|. -+.+++++.|+++..++.+...  ...++.+++.+..+    +++++++++-...||+..+ 
T Consensus        92 gd----~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~--~~~le~i~~~lsqh----~p~~vfv~hgdsSTgV~q~-  160 (385)
T KOG2862|consen   92 GD----NVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQ--AVPLEEITEKLSQH----KPKAVFVTHGDSSTGVLQD-  160 (385)
T ss_pred             CC----eEEEEEechHHHHHHHHHHhhCceeeEEecCccc--CccHHHHHHHHHhc----CCceEEEEecCccccccch-
Confidence            99    877654 4443 2578889999999999776543  67899999999987    8999999988889998855 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                       -++.+-.+|++|++++++|.+.+...    .++ -+.+.         .+++.+.+| -|.+++.+|+-+  +.   .+
T Consensus       161 -~~~~~g~lc~k~~~lllVD~VaSlgg----t~F-~mDew---------gVDvaytgS-QKaL~aP~GLsi--is---fS  219 (385)
T KOG2862|consen  161 -LLAISGELCHKHEALLLVDTVASLGG----TEF-EMDEW---------GVDVAYTGS-QKALGAPAGLSI--IS---FS  219 (385)
T ss_pred             -HHHHHHHHhhcCCeEEEEechhhcCC----ccc-eehhh---------cccEEEecc-hhhcCCCCCcce--ee---cC
Confidence             26677788999999999999887632    122 12221         344776655 799965566533  43   68


Q ss_pred             HHHHHHHHHhhh
Q psy13922        258 PGVKAMLHKSIS  269 (509)
Q Consensus       258 ~~~~~~l~~~~~  269 (509)
                      +...+++++..+
T Consensus       220 ~ka~~~~~~rK~  231 (385)
T KOG2862|consen  220 DKALEAIRDRKT  231 (385)
T ss_pred             HHHHHHHhhccC
Confidence            888888876654

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.33  E-value=1.4e-09  Score=107.72  Aligned_cols=300  Identities=14%  Similarity=0.147  Sum_probs=187.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcc--cCCCccc-CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGC--RGQSVGS-YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~--~~~~~~~-Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ..+-.++.|+++.-..+.+-  .+-...+ |+...-..++.+...+..++.+|  .+..||-..+|+ +|...++.+|.+
T Consensus        34 SEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPhSGs-~AN~av~~All~  110 (413)
T COG0112          34 SENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPHSGS-QANQAVYLALLQ  110 (413)
T ss_pred             ccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCCCch-HHHHHHHHHHcC
Confidence            55556889999987777661  1212222 45444444555555566655556  345577777777 577789999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHH---HhcC--CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASL---AEFN--MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~---~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |||    +|+-.+-.+.++...-   ...|  .+++.++.+++ +..+|.|++++...+.    +||+|+.-.-..|  .
T Consensus       111 pGD----timgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~----kPK~ii~G~SaY~--r  179 (413)
T COG0112         111 PGD----TIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV----KPKLIIAGGSAYS--R  179 (413)
T ss_pred             CCC----eEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHh----CCCEEEECccccc--c
Confidence            999    9998876666554221   1112  57788888865 3489999999999987    9999997432222  2


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      .+   +++++.+||.+-|.++++|-+|.....-++ .+++...          ..+++ ..|.+|++   .|=|.|.+++
T Consensus       180 ~i---d~~~~reIad~VGA~L~~DmAHiaGLVA~G-~~p~P~~----------~AdvV-TtTTHKTl---rGPrGG~Il~  241 (413)
T COG0112         180 PI---DFKRFREIADEVGAYLMVDMAHVAGLIAGG-VHPNPLP----------HADVV-TTTTHKTL---RGPRGGIILT  241 (413)
T ss_pred             cc---CHHHHHHHHHHhCceEEehHHHHHHHHhcc-cCCCCCC----------ccceE-eCCcccCC---CCCCceEEEe
Confidence            23   488899999999999999999854332222 2222111          12244 56889998   5668899873


Q ss_pred             ecCCHHHHHHHHHhhhccc--CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        254 INLDPGVKAMLHKSISAML--CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                        .++++..++.+...+..  ++..-..++                              ...++..++.         .
T Consensus       242 --~~eel~kkin~aVFPg~qggpl~HviAa------------------------------kaVa~~Eal~---------p  280 (413)
T COG0112         242 --NDEELAKKINSAVFPGLQGGPLMHVIAA------------------------------KAVAFKEALE---------P  280 (413)
T ss_pred             --ccHHHHHHhhhhcCCccCCChHHHHHHH------------------------------HHHHHHHHcC---------h
Confidence              45688888876544222  222220000                              1122333332         1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                          ..++..+...++.+.|.+.|.+. |++++. ...+-.+.++++ +.         |+  +-..+..+|++.||.+.
T Consensus       281 ----~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~-~~---------~~--~Gk~ae~~L~~~~It~N  343 (413)
T COG0112         281 ----EFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLR-SK---------GL--TGKKAEAALERAGITVN  343 (413)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcc-cC---------CC--CHHHHHHHHHHcCEeec
Confidence                13555667777788888888876 888874 233334556776 22         22  22227889999999886


Q ss_pred             c
Q psy13922        411 P  411 (509)
Q Consensus       411 p  411 (509)
                      -
T Consensus       344 K  344 (413)
T COG0112         344 K  344 (413)
T ss_pred             c
Confidence            4

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.32  E-value=1.5e-09  Score=105.68  Aligned_cols=318  Identities=16%  Similarity=0.183  Sum_probs=202.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |+..+.+..+.++..--+.        |+.+.+...|..++.+.++        -+.++.|.-+..|-+.++..+.++++
T Consensus        56 GTgams~~qwaamm~GDEA--------Yagsrs~~~L~~avkdifG--------fq~~iPthQGRgAE~Il~~i~ik~~~  119 (471)
T COG3033          56 GTGAMTDKQWAAMMRGDEA--------YAGSRSYYALADAVKDIFG--------FQYTIPTHQGRGAENILIPILIKKGE  119 (471)
T ss_pred             CcccccHHHHHHHhccchh--------hcccccHHHHHHHHHHhcC--------ceeeeeccCCccHHHHHHHHHhhhcc
Confidence            5555667777777655555        9999999999999999983        36788898888899888988887654


Q ss_pred             CCCC-eEEEc-CCCChhHHHHHHhcCCEEEEEecCCCC--------CCCCCHHHHHHHHHhhhccCCceEEEEe-CCCCC
Q psy13922        102 GKKP-GVLIP-IPQYPLYSASLAEFNMEQIGYYLDESK--------QWGLPISELERSITEARKHCNPRAIVII-NPGNP  170 (509)
Q Consensus       102 ~~~~-~Vlv~-~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NP  170 (509)
                      ..+. ..+++ +..|.......+.+|..+.-++.++.+        +..+|++.|++.|++.... ++..|+++ ..|.-
T Consensus       120 ~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~-nvp~I~~tiT~Nsa  198 (471)
T COG3033         120 QEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD-NVPYIVLTITNNSA  198 (471)
T ss_pred             ccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc-cCcEEEEEEecccc
Confidence            2221 33344 444555666778889988888765432        2357999999999886443 56777764 56667


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEccc-CCccc-----ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEV-YQDNV-----YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Dea-y~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      .|+..|-+.+++..++|++|++.++.|.+ |....     .+.+....++.++..++-.+.+   -+++ |.-|.  |+.
T Consensus       199 gGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD---~~~m-S~KKD--~lv  272 (471)
T COG3033         199 GGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYAD---GCTM-SAKKD--GLV  272 (471)
T ss_pred             CCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhh---hhee-ecccc--cee
Confidence            78999999999999999999999999975 22222     2333456778887777654322   3333 65666  454


Q ss_pred             CCeeEEEeeecCCHHHH---HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        245 GLRGGYSEVINLDPGVK---AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                      -+ .|++.+  .++.+.   ...+...-...+-++.|.++..                            ...+++..+.
T Consensus       273 nm-GGfl~~--~D~~~fDvy~~~~~~~V~~eG~~tYGgl~Gr----------------------------dmealAvGL~  321 (471)
T COG3033         273 NM-GGFLCF--KDDSFFDVYEECRTLVVVQEGFPTYGGLAGR----------------------------DMEALAVGLR  321 (471)
T ss_pred             cc-ccEEEe--cCccHHHHHHHHHhheEeeccccccCcccch----------------------------hHHHHHHHHH
Confidence            33 344443  666543   3333332223333343333211                            2233333332


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCC-----CCHHHHHHHhhcCCCCcHH
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK-----LPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~g~~~~~~  396 (509)
                      ...     -..|   ++...    ...++|.+.|.+. |+.+..|.||--++++..     +|.+.         -+.+-
T Consensus       322 e~~-----~~~y---l~~Rv----~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eq---------Fpaqa  379 (471)
T COG3033         322 EGV-----NFDY---LAHRV----AQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQ---------FPAQA  379 (471)
T ss_pred             Hhc-----CcHH---HHHHH----HHHHHHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCChhh---------CcHHH
Confidence            100     0112   22222    3345677778877 999999999998887763     22211         24556


Q ss_pred             HHHHHHhhcCeEEecCCCC
Q psy13922        397 YAFELLERTGICIVPGAGF  415 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++.++..+.||-.+--..|
T Consensus       380 la~ely~e~GiRavElG~~  398 (471)
T COG3033         380 LACELYKEAGIRAVELGSF  398 (471)
T ss_pred             HHHHHHHHhCeeeeeeece
Confidence            6788899999987754433

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.32  E-value=1.4e-09  Score=120.40  Aligned_cols=146  Identities=14%  Similarity=0.138  Sum_probs=104.8

Q ss_pred             ccCCC---CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh----hcCCCCCCCeEEEcCCCChhHHH
Q psy13922         47 GSYTD---SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL----IEDVDGKKPGVLIPIPQYPLYSA  119 (509)
Q Consensus        47 ~~Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~p~y~~~~~  119 (509)
                      +-|.|   .+|..++-.++.+++.+..|.+.-  .+.- ++++.+....+.++    ..+|++.++.|+++.-.|.....
T Consensus       530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~--Sl~p-~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa  606 (954)
T PRK12566        530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAI--CMQP-NSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA  606 (954)
T ss_pred             CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeE--eecC-CchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH
Confidence            34777   678888888888888777664322  2222 33333443333333    34566567789999888866666


Q ss_pred             HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccc
Q psy13922        120 SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV  199 (509)
Q Consensus       120 ~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Dea  199 (509)
                      .+...|++++.++.++++  .+|+++|++.+++..  .++++|++++|++-++..   +++++|+++|+++|+++++|-+
T Consensus       607 sa~~~GieVv~Vp~D~~G--~iDle~L~a~I~~~~--~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~Galv~vDgA  679 (954)
T PRK12566        607 SAQMAGMRVVIVECDPDG--NVDLDDLKAKAAAAG--DRLSCLMITYPSTHGVYE---EGIREICEVVHQHGGQVYMDGA  679 (954)
T ss_pred             HHHHCCCEEEEeccCCCC--CcCHHHHHHHhhccC--CCEEEEEEEecCcCceec---chHHHHHHHHHHcCCEEEEEee
Confidence            678889999999998654  789999999997321  168888888888766443   5699999999999999999988


Q ss_pred             CCc
Q psy13922        200 YQD  202 (509)
Q Consensus       200 y~~  202 (509)
                      +..
T Consensus       680 ~~~  682 (954)
T PRK12566        680 NLN  682 (954)
T ss_pred             Chh
Confidence            853

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.31  E-value=1.4e-09  Score=121.09  Aligned_cols=147  Identities=14%  Similarity=0.197  Sum_probs=107.5

Q ss_pred             cccCCCC---cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCCCCCeEEEcCCCChhHH
Q psy13922         46 VGSYTDS---PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDGKKPGVLIPIPQYPLYS  118 (509)
Q Consensus        46 ~~~Y~~~---~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~p~y~~~~  118 (509)
                      ++-|.|.   +|..++...+.+++.+..|.+   +--+..+|++.+-...+.+++.    .|+.+++.|+++.-.|....
T Consensus       516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd---~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP  592 (939)
T TIGR00461       516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD---AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP  592 (939)
T ss_pred             cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC---CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence            4446654   577778888888887777744   2334445555544433333322    33334668999998987777


Q ss_pred             HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc
Q psy13922        119 ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE  198 (509)
Q Consensus       119 ~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~De  198 (509)
                      ..++..|++++.++.+++  ..+|++.|++.++++.  .++++|++++|+| +|.+-+  ++++|+++|+++|.++++|.
T Consensus       593 asa~~~G~~Vv~V~~d~~--G~iDle~L~~~i~~~~--~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDg  665 (939)
T TIGR00461       593 ASAAMAGMQVVPVNCDQD--GNIDLVDLKNKAEQHG--DELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDG  665 (939)
T ss_pred             HHHHHCCCEEEEeccCCC--CCcCHHHHHHHHhhcC--CceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEe
Confidence            778889999999998754  3899999999998521  1799999999999 788743  39999999999999999999


Q ss_pred             cCCc
Q psy13922        199 VYQD  202 (509)
Q Consensus       199 ay~~  202 (509)
                      ++..
T Consensus       666 Aq~~  669 (939)
T TIGR00461       666 ANMN  669 (939)
T ss_pred             cChh
Confidence            9854

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.31  E-value=1.5e-09  Score=117.82  Aligned_cols=175  Identities=14%  Similarity=0.028  Sum_probs=119.9

Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEE
Q psy13922         51 DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIG  130 (509)
Q Consensus        51 ~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~  130 (509)
                      +..-..+..+..|+.+    |   ....-++++|+|.++..++.+++.+||    .|++.-.||-+..+.+...|++++.
T Consensus       193 ~~G~i~eAe~~aA~~f----g---Ad~tyfvvNGTS~~n~av~~a~~~~Gd----~VLvdRN~HKSv~~aLilsga~PVY  261 (713)
T PRK15399        193 HTGPHLEAEEYIARTF----G---AEQSYIVTNGTSTSNKIVGMYAAPAGS----TLLIDRNCHKSLAHLLMMSDVVPIW  261 (713)
T ss_pred             CChHHHHHHHHHHHHh----C---CCcEEEEeCChHHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHcCCeeEE
Confidence            3333445666666666    3   224678899999999999999999999    9999999999999999999999999


Q ss_pred             EecCCCCCCC----CCH-----HHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEE-EEcccC
Q psy13922        131 YYLDESKQWG----LPI-----SELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL-FADEVY  200 (509)
Q Consensus       131 v~~~~~~~~~----~d~-----~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~l-I~Deay  200 (509)
                      ++...+ .|+    ++.     +.+++.+++.....++++++|++|+. .|.+++   +++|+++|   |+.+ ++||+|
T Consensus       262 l~P~~n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAh  333 (713)
T PRK15399        262 LKPTRN-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAW  333 (713)
T ss_pred             eccccc-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccc
Confidence            865432 232    344     88999998754323557888888844 699988   66666666   5666 699999


Q ss_pred             Ccc-cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        201 QDN-VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ... .|.+.  +++...+.. .  ..++.-++++.|.+|.+   +++.-+.++
T Consensus       334 gah~~F~p~--~~~~sam~~-~--~~aD~~i~~tQStHKtL---~alTQaS~i  378 (713)
T PRK15399        334 VPYTHFHPI--YQGKSGMSG-E--RVPGKVIFETQSTHKML---AAFSQASLI  378 (713)
T ss_pred             hhhhhcCcc--cCCcChhhC-C--CCCCeeeeeeeehhccc---cccchheee
Confidence            653 23321  221111111 0  01133367788999998   566544443

>KOG1357|consensus

Probab=99.31  E-value=3.5e-11  Score=120.09  Aligned_cols=314  Identities=13%  Similarity=0.081  Sum_probs=193.9

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEec
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL  133 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~  133 (509)
                      |..++.+.+.+...++.|   .++.+++..| .....+.+-+|+.++.    -|+-..-+|.+...-++.-|+.+.-+..
T Consensus       179 G~~~~hkelE~l~A~f~g---~e~a~vF~mG-f~TNs~~~p~l~~~gs----LIiSDelNHaSi~~GaRLSgAtiRVfkH  250 (519)
T KOG1357|consen  179 GTTEEHKELEELVARFLG---VEDAIVFSMG-FATNSMNIPSLLGKGS----LIISDELNHASLITGARLSGATTRVFRH  250 (519)
T ss_pred             ccHHHHHHHHHHHHHhcC---CcceEEEecc-ccccccCcceeecCCc----ceeeccccchheeccccccCceEEEEec
Confidence            444444444444444434   4567788777 5677777888999886    7888888999998888888998887765


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcc--CCc-----eEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccc
Q psy13922        134 DESKQWGLPISELERSITEARKH--CNP-----RAIVI-INPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY  205 (509)
Q Consensus       134 ~~~~~~~~d~~~L~~~i~~~~~~--~~~-----~~ivi-~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~  205 (509)
                      +       |+..||+.+++....  +++     +.+++ ..-...-|.+..   +.+++.++++|..+++.||+++....
T Consensus       251 N-------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~  320 (519)
T KOG1357|consen  251 N-------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAM  320 (519)
T ss_pred             C-------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeecccccccc
Confidence            4       677777777664221  111     33443 455666777755   89999999999999999999998766


Q ss_pred             cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcc----cCcchhhhhc
Q psy13922        206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAM----LCPTVLALVS  281 (509)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~  281 (509)
                      +..  ......+    ...++....|.+++|+|+| |..|   ||+.   +++++++.++......    ..++..    
T Consensus       321 g~t--Grgvce~----~g~d~~dvDImMGtftKSf-ga~G---Gyia---gsk~lid~lrt~s~~~~yat~~sppv----  383 (519)
T KOG1357|consen  321 GAT--GRGVCEY----FGVDPEDVDIMMGTFTKSF-GAAG---GYIA---GSKELIDYLRTPSPSALYATSLSPPV----  383 (519)
T ss_pred             CCC--Ccceeec----cCCCchhheeecceehhhc-cccc---ceec---CcHHHHhhhccCCCceeecccCChHH----
Confidence            321  1122221    1111122246689999999 7766   9987   8999999887543311    122222    


Q ss_pred             cccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy13922        282 LPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGM  361 (509)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  361 (509)
                                    +|.             ...++..+..         .......++..+.+.++..++...|.+. |+
T Consensus       384 --------------aqq-------------~~ssl~~i~G---------~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gf  426 (519)
T KOG1357|consen  384 --------------AQQ-------------ILTSVKHIMG---------EDGTNRGRQKIERLAENSRYFRWELQKM-GF  426 (519)
T ss_pred             --------------HHH-------------HHHHHHhhcC---------CCcccHHHHHHHHHHhhhHHHHHhhhcC-cE
Confidence                          111             1122233322         1111226777888899999999999988 88


Q ss_pred             eeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHH
Q psy13922        362 SCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKA  441 (509)
Q Consensus       362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~  441 (509)
                      .++....+-.+-+-+--|.+.            .. ..+.|.+.+|.++-+.+...+                       
T Consensus       427 ivyG~~dSpVvplll~~~~k~------------~~-f~r~~l~~nigvVvvgfPatp-----------------------  470 (519)
T KOG1357|consen  427 IVYGNNDSPVVPLLLYGPAKI------------VA-FSREMLERNIGVVVVGFPATP-----------------------  470 (519)
T ss_pred             EEecCCCCCcceeeecCcccc------------cH-HHHHHHhcCceEEEEeCCCch-----------------------
Confidence            887655552222112112211            11 355666678877754432221                       


Q ss_pred             hhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        442 KAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                              .+              .+          ..|++.+  ++.|+++.+++.+.++-++.+.+
T Consensus       471 --------l~--------------e~----------r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~~~~  506 (519)
T KOG1357|consen  471 --------LL--------------ES----------RARFCLSASHTKEDLDRALEVIDRVGDEDGVK  506 (519)
T ss_pred             --------HH--------------Hh----------HHHhhhcccccHHHHHHHHHHHhhhchhhcce
Confidence                    00              11          5666665  89999999998888877554443

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.22  E-value=7e-09  Score=105.26  Aligned_cols=302  Identities=12%  Similarity=0.108  Sum_probs=166.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccC-----CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRG-----QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~-----~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      |+..+|+.|++++.+.+.+...     -..++.++.  ..++.+.+.+.+++.++.+-+.+=+++++|+|.++.++...|
T Consensus        11 GPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~--F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl   88 (364)
T PRK12462         11 GPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSW--FSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF   88 (364)
T ss_pred             CCcCCCHHHHHHHHHHHhcccccCccccccccccHH--HHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc
Confidence            6677899999999988877432     113333332  255666666666666664323333455677999999999999


Q ss_pred             hcCCCCCCCeEE--EcCCCChh-HHHHHHhcCCEEEEEecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922         97 IEDVDGKKPGVL--IPIPQYPL-YSASLAEFNMEQIGYYLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus        97 ~~~gd~~~~~Vl--v~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                      ..+++    .++  +..-.|.. +...++..| ++..+......+|  .++++.+  .+..     +.+.|.+++-.-.|
T Consensus        89 l~~g~----~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~-----d~~~v~~t~NETst  156 (364)
T PRK12462         89 SRPGA----AAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDA-----RAPFRHYVSNETVE  156 (364)
T ss_pred             CCCCC----cEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCC-----CCcEEEEccCCCCc
Confidence            98886    554  34444433 456666766 4443322111122  3455554  1122     46777777667777


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      |+.++        ++.+.+++++|+|.+-..+..     ...+..+           ++++. |.=|.+ |.||+  +.+
T Consensus       157 Gv~~~--------~~~~~~~~llvvD~sS~~~s~-----pid~~~~-----------dvi~a-gsQKnl-gP~Gl--tvv  208 (364)
T PRK12462        157 GLQFP--------DAAGLPDSPLIADMSSDFMSR-----PFDVEAY-----------GMVYA-HAQKNL-GPAGV--TVA  208 (364)
T ss_pred             eEecC--------cccccCCCeEEEEcCchhhCC-----CCChHHc-----------cEEEe-eccccC-CCCce--EEE
Confidence            88876        222236899999987765331     2333332           26665 659999 88885  444


Q ss_pred             eeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc---ccchhhcccCCCCCCCC
Q psy13922        252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV---GQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~al~~~~~~~~~~~~  328 (509)
                      +   .+++.+++..+..     ++.+                   .+...+-++.+.+..   ...++...++       
T Consensus       209 i---vs~~al~~~~~~~-----p~~l-------------------dy~~~~~~~s~~nTPpv~~iy~l~~~l~-------  254 (364)
T PRK12462        209 I---IRRALLERVPDTL-----PPML-------------------DFRTHVEHRSNYNTPPVFAIYVMALVLR-------  254 (364)
T ss_pred             E---ECHHHHhhccccC-----Cchh-------------------hHHHHHhcCCCCCCchHHHHHHHHHHHH-------
Confidence            4   3777666554310     1110                   000000011111111   2333333322       


Q ss_pred             chHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeec----cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHh
Q psy13922        329 SYEQFS-REKQSVLDSLKQRAKMVADTFNSIEGMSCN----PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLE  403 (509)
Q Consensus       329 ~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~  403 (509)
                       |-.-. .-++.+.++.++..+++++.+...+++-..    ...+-+.+.+++.-+.            .+.+| ...++
T Consensus       255 -~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~------------l~~~f-~~~a~  320 (364)
T PRK12462        255 -WIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPR------------LDTLF-KEQST  320 (364)
T ss_pred             -HHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHH------------HHHHH-HHHHH
Confidence             11000 026777888888899999999988654322    2334445544443111            13333 45667


Q ss_pred             hcCeEEecCC
Q psy13922        404 RTGICIVPGA  413 (509)
Q Consensus       404 ~~gI~v~pg~  413 (509)
                      +.|+....|+
T Consensus       321 ~~gl~~lkGh  330 (364)
T PRK12462        321 EAGFCGLSGH  330 (364)
T ss_pred             HCCCccccCC
Confidence            7898877655

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.13  E-value=1.1e-08  Score=104.83  Aligned_cols=194  Identities=14%  Similarity=0.086  Sum_probs=119.3

Q ss_pred             CCCCC-CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-cC
Q psy13922         22 DDPRF-PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-ED   99 (509)
Q Consensus        22 ~~~~~-p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~   99 (509)
                      |+..+ |...++++...+-.     .+++++.  ..++.+.+.+.+.+.++.+-+.+-+++++|+|.+++.++..+. ++
T Consensus        10 gp~~~~~~~~~~~~~~~~~~-----~~HRs~~--F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~   82 (374)
T TIGR01365        10 GPCAKRPGWSIEELKNAPLG-----RSHRSKL--GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCR   82 (374)
T ss_pred             CccCCCchhhHHHHhhhhcc-----cCcCCHH--HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCC
Confidence            44444 44455555543333     2234432  2556666666666666633223346779999999999999998 47


Q ss_pred             CCCCCCeEEEcCCCChh-HH-HHHHhcCC-EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPL-YS-ASLAEFNM-EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~-~~-~~~~~~g~-~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      |+    .|++.. .|.. +. ++++..|. ++..+.....  -.+|+++++.   .      . .|++++.--.||+..+
T Consensus        83 g~----~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~~g--~~~~~~~ve~---~------~-~v~~vhnETSTGv~np  145 (374)
T TIGR01365        83 GV----DVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAEYG--KLPDLKKVDF---K------N-DVVFTWNGTTSGVRVP  145 (374)
T ss_pred             CC----eEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCCCC--CCCCHHHcCC---C------C-CEEEecCCCchheecc
Confidence            76    888765 5444 35 78888999 4666653322  2678888862   1      1 2456766677888887


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                         +++++..+  +++++|+|.+-+....     ...+..           .++++. |.-|.+.+.||  ++.++   .
T Consensus       146 ---v~~i~~~~--~~~lliVDavSs~g~~-----~l~~d~-----------iDv~~t-gsQK~L~~ppG--ls~v~---v  198 (374)
T TIGR01365       146 ---NGDFIPAD--REGLTICDATSAAFAQ-----DLDYHK-----------LDVVTF-SWQKVLGGEGA--HGMLI---L  198 (374)
T ss_pred             ---cccccccc--CCCcEEEEccchhcCC-----CCChhH-----------CcEEEE-echhccCCCCc--eEEEE---E
Confidence               44444322  5899999988766332     222222           126655 66999954444  56666   4


Q ss_pred             CHHHHHHHHH
Q psy13922        257 DPGVKAMLHK  266 (509)
Q Consensus       257 ~~~~~~~l~~  266 (509)
                      +++.+++...
T Consensus       199 s~~Al~~~~~  208 (374)
T TIGR01365       199 SPRAVARLES  208 (374)
T ss_pred             CHHHHHHHhh
Confidence            7777776654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.09  E-value=1e-06  Score=95.25  Aligned_cols=225  Identities=15%  Similarity=0.119  Sum_probs=147.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC-
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV-  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g-  100 (509)
                      ..+..++.++..+...+-+   .....|..+.+...+.+.+.+++.+.+|.+  ...-.+|+|||+|.-..+...++.. 
T Consensus        91 ~~~~~~paila~~~a~~~N---~n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~~G~~TsGGT~ANl~aL~~AR~~k~  165 (608)
T TIGR03811        91 NSETLMPAILAYNYAMLWN---GNNVAYESSPATSQMEEEVGKEFATLMGYK--NGWGHIVADGSLANLEGLWYARNIKS  165 (608)
T ss_pred             cCCCCHHHHHHHHHHHHhC---CCCCccccCchHHHHHHHHHHHHHHHhCCC--CCCeEEeCChHHHHHHHHHHHHHhhh
Confidence            3444455555555444444   222335455566889999999999998855  3344578999998887766654310 


Q ss_pred             --------C--------------------------------------------CCCC-eEEEcCCCChhHHHHHHhcCC-
Q psy13922        101 --------D--------------------------------------------GKKP-GVLIPIPQYPLYSASLAEFNM-  126 (509)
Q Consensus       101 --------d--------------------------------------------~~~~-~Vlv~~p~y~~~~~~~~~~g~-  126 (509)
                              .                                            -.+. .++++.-.|.++..++..+|. 
T Consensus       166 ~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG  245 (608)
T TIGR03811       166 LPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIG  245 (608)
T ss_pred             ccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCC
Confidence                    0                                            0001 477888889999999999998 


Q ss_pred             --EEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHH---HHCCc--EEEEcc
Q psy13922        127 --EQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFA---HREKL--FLFADE  198 (509)
Q Consensus       127 --~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia---~~~~i--~lI~De  198 (509)
                        .++.||.+++  +++|++.|++.|++.... ..+-+||.+...-.+|.+=+   +++|+++|   +++|+  ++.+|.
T Consensus       246 ~~~vv~VpvD~~--~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDA  320 (608)
T TIGR03811       246 LDQVIPVPVDSN--YRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDA  320 (608)
T ss_pred             cccEEEeecCCC--CcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeec
Confidence              5899998754  599999999999864333 23445566788888999944   66666666   77897  699999


Q ss_pred             cCCccc---ccC-CCcccc------------------------HHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        199 VYQDNV---YAE-GSKFYS------------------------FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       199 ay~~~~---~~~-~~~~~~------------------------~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      +|+++.   +-+ ...+.+                        .......+    +..+.|++ .++|.+ . .-...|.
T Consensus       321 AyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl----e~ADSItv-DpHK~g-~-~Py~~G~  393 (608)
T TIGR03811       321 AYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI----SEAESVTI-DPHKMG-Y-IPYSAGG  393 (608)
T ss_pred             cccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcC----cCceEEEe-Cccccc-c-cCCCeEE
Confidence            999853   111 000111                        11111111    24567877 889997 3 5678887


Q ss_pred             EeeecCCHHHHHHHH
Q psy13922        251 SEVINLDPGVKAMLH  265 (509)
Q Consensus       251 v~~~~~~~~~~~~l~  265 (509)
                      +++  .++.+.+.+.
T Consensus       394 ll~--Rd~~~~~~~~  406 (608)
T TIGR03811       394 IVI--QDIRMRDVIS  406 (608)
T ss_pred             EEE--eCHHHHHHHh
Confidence            776  7887666553

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.08  E-value=1e-07  Score=94.00  Aligned_cols=202  Identities=20%  Similarity=0.256  Sum_probs=127.1

Q ss_pred             HHHHHHHHH-HhcccCCCcccCCCC-cchHHHHHHHHHHHhhhcCCCCCCCcEEE---eCCHHHHHHHHHHHhhcCCCCC
Q psy13922         29 DVKQRAQAV-LDGCRGQSVGSYTDS-PGIEIIRRHVAQYISRRDGQPADWQDVIL---SAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        29 ~v~~a~~~~-l~~~~~~~~~~Y~~~-~g~~~lr~~va~~l~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      +|+++.++. +.+....+.+.|+-. .|-..|.+-.|+.+    |    .|.-++   .-++|.||.+++..+++|||  
T Consensus        28 KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vf----g----aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD--   97 (403)
T PF06838_consen   28 KVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVF----G----AEDALVRPQFVSGTHAIALALFGVLRPGD--   97 (403)
T ss_dssp             HHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHC----T-----SEEEEETTS-SHHHHHHHHHHHH--TT---
T ss_pred             HHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHh----C----chhhhhcccccchHHHHHHHHHhcCCCCC--
Confidence            455554332 223333334446553 36555666666665    2    444444   24677899999999999999  


Q ss_pred             CCeEEE-cCCCChhHHHHH----------HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe-CCCCCC
Q psy13922        104 KPGVLI-PIPQYPLYSASL----------AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPT  171 (509)
Q Consensus       104 ~~~Vlv-~~p~y~~~~~~~----------~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NPt  171 (509)
                        +++. ...-|......+          +..|++...+++.+++  .+|.+.+++.++.     ++|+|+|- +...-.
T Consensus        98 --~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~-----~tk~v~IQRSrGYs~  168 (403)
T PF06838_consen   98 --ELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDG--TIDWEAIKKALKP-----NTKMVLIQRSRGYSW  168 (403)
T ss_dssp             --EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTS--SB-HHHHHHHHHT-----TEEEEEEE-S-TTSS
T ss_pred             --eEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCC--CcCHHHHHHhhcc-----CceEEEEecCCCCCC
Confidence              8774 555566666554          5678999999998865  7899999999997     89999995 555555


Q ss_pred             CCCCCHHHHHHHHHHHHH--CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC--e
Q psy13922        172 GQVLTKENIQDIIKFAHR--EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL--R  247 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~--~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl--r  247 (509)
                      =..++.++++++++++|+  .++++++|.+|++|+-.-+  +.       +++.      -+..+|+-|.. | .|+  -
T Consensus       169 R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E--P~-------~vGA------Dl~aGSLIKNp-G-GgiApt  231 (403)
T PF06838_consen  169 RPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE--PT-------EVGA------DLMAGSLIKNP-G-GGIAPT  231 (403)
T ss_dssp             S----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS---GG-------GGT-------SEEEEETTSGG-G-TTT-SS
T ss_pred             CCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC--cc-------ccch------hheeccceeCC-C-CCccCc
Confidence            568888999999999887  5799999999999985432  22       2222      35589999999 6 777  4


Q ss_pred             eEEEeeecCCHHHHHHHHHhhh
Q psy13922        248 GGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .||++   +..+++++.....+
T Consensus       232 GGYIa---Gr~~lVe~~a~RLT  250 (403)
T PF06838_consen  232 GGYIA---GRKDLVERAAYRLT  250 (403)
T ss_dssp             -EEEE---ESHHHHHHHHHHHS
T ss_pred             CCEEe---chHHHHHHHHhhhc
Confidence            89998   89999998865443

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.01  E-value=7.1e-08  Score=93.18  Aligned_cols=307  Identities=13%  Similarity=0.134  Sum_probs=187.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCC-CChhHH----HHHHhcCCEEEEEe
Q psy13922         58 IRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIP-QYPLYS----ASLAEFNMEQIGYY  132 (509)
Q Consensus        58 lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p-~y~~~~----~~~~~~g~~~~~v~  132 (509)
                      +-..++-++    |  ..+++++++.+++-.++.++.+..++..  ++.||+++- +|+.-.    ..+...+..   ++
T Consensus        81 lgdklApLi----G--A~~~Evvv~dtts~nl~k~L~aalr~~~--~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~  149 (407)
T COG3844          81 LGDKLAPLI----G--ARAGEVVVTDTTSINLFKVLAAALRPQE--GRRVIVSEGDNFPTDLYIAEGLADLLGIG---YD  149 (407)
T ss_pred             HHHHhhhhh----c--CCCCceEEeCCcchHHHHHHHHHhccCC--CceEEeecCCCCCcchhhhcchhhhhccc---cc
Confidence            444444444    4  6788999999999999988888877653  447777754 333222    222333321   11


Q ss_pred             cCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccc
Q psy13922        133 LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFY  212 (509)
Q Consensus       133 ~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~  212 (509)
                      +    ...+.+.++++++..     ++.+|++++.+.-||+.+.   +.+|..++++++++++-|-+++.....     .
T Consensus       150 ~----~~~~~P~~~~~~~~d-----d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp-----~  212 (407)
T COG3844         150 L----EGVIAPRALEEAITD-----DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVP-----V  212 (407)
T ss_pred             c----eeeeChHHHHHhhcc-----ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcc-----e
Confidence            1    114467899999988     7999999999999999988   899999999999999999998774332     1


Q ss_pred             cHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCc
Q psy13922        213 SFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFP  292 (509)
Q Consensus       213 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (509)
                      .+-..         +. -+.+++--|.++|=||-..|..+    .++..+......++|+++..+....  +     .|.
T Consensus       213 ~Lh~~---------ga-DfaigcsyKYLNgGPGapa~l~v----~~~h~e~~~~~lsgW~gha~pf~m~--~-----~y~  271 (407)
T COG3844         213 DLHAA---------GA-DFAIGCSYKYLNGGPGAPAGLFV----APRHRERSWPPLSGWWGHARPFAME--E-----VYA  271 (407)
T ss_pred             eeccc---------CC-CeeeeeeceeccCCCCCceeEEe----ccccccccccccccccCCCCcchhh--h-----ccC
Confidence            11110         11 24477778998877887666554    5555555555555565554431111  0     000


Q ss_pred             hhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCeeccCC--
Q psy13922        293 DDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS-IE--GMSCNPVQ--  367 (509)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~--  367 (509)
                         ...-...+--+++..+..+++...++-       |...  .+.++|++-..+.+++++.++. ++  ++++..|.  
T Consensus       272 ---p~~ga~rf~~gt~~V~s~aal~~aLDi-------fa~~--~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~  339 (407)
T COG3844         272 ---PGPGARRFLCGTQPVLSLAALEGALDI-------FADV--DITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH  339 (407)
T ss_pred             ---cCccccceeeCCcchhhhHHHhhhhhh-------hhhc--CHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh
Confidence               000001122233333344444444331       1111  2788899999999999998876 33  45554332  


Q ss_pred             --ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcC
Q psy13922        368 --GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEG  445 (509)
Q Consensus       368 --~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  445 (509)
                        -|-.+.  +.+|.             ... +.+.|.++||..-    |-.                            
T Consensus       340 ~~rGsqvS--~~hp~-------------~~~-V~qaLi~rGVigD----~R~----------------------------  371 (407)
T COG3844         340 EERGSQVS--LYHPH-------------GYQ-VMQALIDRGVIGD----FRE----------------------------  371 (407)
T ss_pred             hhccceee--EecCc-------------HHH-HHHHHHHcCcccc----ccC----------------------------
Confidence              222333  22222             222 5677778898642    111                            


Q ss_pred             CCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHHHHHHHHHHHHHHHH
Q psy13922        446 KCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~i~~~~~~l~~~~~~  503 (509)
                                          |+          .+|+.++   ++..++-.+++.|.++++.
T Consensus       372 --------------------P~----------vlRfgftPlY~~~~DVw~AV~~L~evL~t  402 (407)
T COG3844         372 --------------------PD----------VLRFGFTPLYVSFVDVWDAVDALEEVLDT  402 (407)
T ss_pred             --------------------CC----------eeeecCccceechhHHHHHHHHHHHHHHh
Confidence                                44          7999988   7889999999999999875

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.00  E-value=3.1e-07  Score=103.94  Aligned_cols=187  Identities=12%  Similarity=0.062  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCC-----cc----hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDS-----PG----IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~-----~g----~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      .|+.+++++.+...     ++..|+|-     +|    +.++++.+++++    |  ++++|+.++.++|.+.+.++.++
T Consensus       117 ~P~~v~~~i~~~~~-----~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt----G--~~~anaSL~d~aTAaaea~~~a~  185 (993)
T PLN02414        117 VPPVILRNILENPG-----WYTQYTPYQAEIAQGRLESLLNYQTMITDLT----G--LPMSNASLLDEGTAAAEAMAMCN  185 (993)
T ss_pred             CCHHHHHHHHhChH-----HHhhcCCCchHHHHHHHHHHHHHHHHHHHHh----C--CChhhEeecCChHHHHHHHHHHH
Confidence            57677677644332     23334443     34    445667777776    4  77899999999999999888777


Q ss_pred             h-cCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922         97 I-EDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus        97 ~-~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                      . .++  ++++|++++-.|+.+...++    ..|++++.++.+..     +      ...+     .+.++++..|+ -+
T Consensus       186 ~~~~g--~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~-----~v~~vlvq~P~-~~  246 (993)
T PLN02414        186 NILKG--KKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSG-----DVCGVLVQYPA-TD  246 (993)
T ss_pred             hcccC--CCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccC-----ceEEEEEecCC-CC
Confidence            4 333  24589999999998776654    45999998876421     1      0111     34444444444 48


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC---CCee
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC---GLRG  248 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~---Glr~  248 (509)
                      |.+.+   +++|+++|+++|+++++ .+... ...   ...++.++    +.      -|++++..|+. +.-   |=+.
T Consensus       247 G~v~d---v~~I~~~ah~~GaL~iV-aad~l-al~---~l~~pge~----GA------Di~vgsgqKwg-~P~G~GGP~a  307 (993)
T PLN02414        247 GEVLD---YAEFVKNAHANGVKVVM-ATDLL-ALT---MLKPPGEW----GA------DIVVGSAQRFG-VPMGYGGPHA  307 (993)
T ss_pred             eEEcC---HHHHHHHHHHcCCEEEE-EECHH-Hhc---CCCCHhhc----cC------cEEEECCCccc-cCCCCCCCCe
Confidence            99966   99999999999999999 33322 111   12223222    22      23466767765 222   2237


Q ss_pred             EEEeeecCCHHHHHHH
Q psy13922        249 GYSEVINLDPGVKAML  264 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l  264 (509)
                      |++.   ..+++...+
T Consensus       308 Gfla---vr~~~~r~~  320 (993)
T PLN02414        308 AFLA---TSQEYKRLM  320 (993)
T ss_pred             eEEE---ECHHHHhhC
Confidence            8887   466665433

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.93  E-value=3.3e-07  Score=96.20  Aligned_cols=166  Identities=14%  Similarity=0.148  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD  134 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~  134 (509)
                      ..+..+..|+.++       ....-++++|++.++..++.+++.+||    .|+++-+||.+....+-..|+..+++...
T Consensus        72 i~eAqe~aA~~fg-------Ad~tyFvvNGTS~ank~vi~a~~~~GD----~VLvdRN~HKSi~~glilaGa~Pvyl~p~  140 (557)
T COG1982          72 IKEAQELAARVFG-------ADHTYFVVNGTSTANKAVINAVLTPGD----KVLVDRNCHKSIHHGLILAGATPVYLEPS  140 (557)
T ss_pred             HHHHHHHHHHHhC-------CCceEEEECCccHHHHHHHHhhcCCCC----EEEecCCccHHHHHHHHHcCCceEEecCC
Confidence            3556666666663       223688899999999999999999999    99999999999999999999999988654


Q ss_pred             CCCCC----CCCHHHHHHHHHhhhccCCc-eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCC
Q psy13922        135 ESKQW----GLPISELERSITEARKHCNP-RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       135 ~~~~~----~~d~~~L~~~i~~~~~~~~~-~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~  209 (509)
                      .+..|    +++.+.+.+.+..+.   .. ++++++||.. .|++++   +++|.+++.++++|+.+|+++.......+ 
T Consensus       141 ~np~~gi~ggI~~~~~~~~l~~~~---~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~-  212 (557)
T COG1982         141 RNPLYGIIGGIPLETFKEALLAHP---DAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSP-  212 (557)
T ss_pred             CCccccccCCCCHHHHHHHHHhCh---hhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcccccccc-
Confidence            43323    578999999887642   34 7788887766 599988   88888899999999999998854321111 


Q ss_pred             ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        210 KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      ....   ...+      ...+++..|.+|..   +++.-+-.
T Consensus       213 ~l~~---~~~~------~~~~~~tqS~HK~l---~alSQaS~  242 (557)
T COG1982         213 MLPE---SALN------GGADFVTQSTHKLL---AALSQASM  242 (557)
T ss_pred             cCcc---hhhh------cCceEEEechhhhh---hhhhhhHH
Confidence            1111   1111      22377788999998   35543333

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.93  E-value=4.5e-09  Score=93.74  Aligned_cols=64  Identities=25%  Similarity=0.484  Sum_probs=60.4

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcC--CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChh
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDG--QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPL  116 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~  116 (509)
                      |++..|.++||+++|+|+++++|  +.+++++|++|+|+++++..++.+++++||    .|+++.|+|.+
T Consensus        88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD----~VlVp~P~Y~~  153 (153)
T PLN02994         88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGD----AFLVPTPYYAA  153 (153)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCC----EEEEeCCCCCC
Confidence            88999999999999999999988  678899999999999999999999999999    99999999963

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.90  E-value=6.8e-07  Score=101.49  Aligned_cols=174  Identities=14%  Similarity=0.119  Sum_probs=115.1

Q ss_pred             CCCcccCCCCc-----chH----HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCC
Q psy13922         43 GQSVGSYTDSP-----GIE----IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQ  113 (509)
Q Consensus        43 ~~~~~~Y~~~~-----g~~----~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~  113 (509)
                      ++++..|.|-+     |..    ++++.++++.    |  ++..|+.+..++|++.+.++.++.-... ++++|++++-.
T Consensus       102 ~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~Lt----G--~~~anaSl~d~aTAa~ea~~~a~~~~~~-~~~~vlv~~~~  174 (954)
T PRK05367        102 PAWYTAYTPYQPEISQGRLEALLNFQTMVADLT----G--LEIANASLLDEATAAAEAMALAKRVSKS-KSNRFFVDDDV  174 (954)
T ss_pred             cchhhccCCCChHHHHHHHHHHHHHHHHHHHHH----C--CChhhccccccHHHHHHHHHHhhhhccC-CCCEEEEcCcc
Confidence            35566677744     444    4455555555    4  6788999999999999988887742211 13499999999


Q ss_pred             ChhHHHHH----HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q psy13922        114 YPLYSASL----AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR  189 (509)
Q Consensus       114 y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~  189 (509)
                      |+.+...+    +..|++++.++.+.+      ++      .+     ++.++++.+| |-+|.+.+   +++|+++|++
T Consensus       175 hP~~~~v~~t~a~~~G~ev~~~~~~~d------~~------~~-----~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~  233 (954)
T PRK05367        175 HPQTLDVLRTRAEPLGIEVVVGDAAKA------LD------HD-----DVFGVLLQYP-GTSGEVRD---YTALIAAAHA  233 (954)
T ss_pred             CHHHHHHHHHHHHhCCCEEEEecCccC------CC------cc-----cEEEEEEecC-CCCeeecc---HHHHHHHHHH
Confidence            99877654    557999999986531      11      12     4666666666 66899965   9999999999


Q ss_pred             CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc-----cCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG-----YMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       190 ~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~-----~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                      +|+++++|.....+..     ..+..    +++.      -|+++|..|+     | |=||  .|++.   ..+++...+
T Consensus       234 ~Gal~~vda~~~Al~~-----l~~pg----e~Ga------Di~vgs~qkfg~P~g~-GGP~--aGfla---vr~~~~r~l  292 (954)
T PRK05367        234 RGALVAVAADLLALTL-----LTPPG----EMGA------DIAVGSAQRFGVPMGF-GGPH--AAYFA---VRDAYKRSM  292 (954)
T ss_pred             cCCEEEEEehhhhccC-----CCChh----hcCC------CEEEeeCcccCCCCCC-CCCC--EEEEE---ECHHHHhhC
Confidence            9999999974432221     11222    2222      2445677887     5 3354  78887   466776665


Q ss_pred             H
Q psy13922        265 H  265 (509)
Q Consensus       265 ~  265 (509)
                      .
T Consensus       293 p  293 (954)
T PRK05367        293 P  293 (954)
T ss_pred             C
Confidence            3

>KOG1383|consensus

Probab=98.86  E-value=4.2e-07  Score=91.88  Aligned_cols=185  Identities=15%  Similarity=0.107  Sum_probs=132.0

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc---C--CCCCCCeEEEcCCCChhHHHHHHhcCCEE
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE---D--VDGKKPGVLIPIPQYPLYSASLAEFNMEQ  128 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~--gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~  128 (509)
                      +..++..++.+++...++.+ ....=..|.|+++++.+..+.+..   .  +- .+..++++.-.+..+...++..+.++
T Consensus       117 ~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I-~~p~iv~~~~v~~a~eK~a~yf~v~l  194 (491)
T KOG1383|consen  117 VVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI-DKPNIVTPQNVHAAFEKAARYFEVEL  194 (491)
T ss_pred             hhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCC-CCccccchHHHHHHHHHHHhhEEEEE
Confidence            44567777777776666544 223346688999997666666532   1  21 24478888888889999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH-CCcEEEEcccCCccccc-
Q psy13922        129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR-EKLFLFADEVYQDNVYA-  206 (509)
Q Consensus       129 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~-~~i~lI~Deay~~~~~~-  206 (509)
                      ..||.++ +.|.+|+..+.+.+++     ++.+++.+.|+-|+|..   +++++|.++..+ +++.+.+|.+-+.|... 
T Consensus       195 ~~V~~~~-~~~~~D~~k~~~~i~e-----Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~  265 (491)
T KOG1383|consen  195 REVPLDE-GDYRVDPGKVVRMIDE-----NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPA  265 (491)
T ss_pred             Eeeeccc-cceEecHHHHHHHhcc-----ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccc
Confidence            9999987 4789999999999999     89999999999999999   889999999999 99999999998888652 


Q ss_pred             CCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        207 EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +....       ...+-+.+.+..|.. +-+|.  |+.--..||++.  +++++.
T Consensus       266 ~~~~~-------~~fdFr~p~V~Sisa-~~HKY--Gl~~~G~~~vl~--r~k~~~  308 (491)
T KOG1383|consen  266 GYLNE-------EEFDFRVPGVTSISA-DGHKY--GLAPAGSSWVLY--RNKELL  308 (491)
T ss_pred             cccCc-------cccccCCCCceeEee-cccee--eeeecCcEEEEE--cccccc
Confidence            11000       011111123233444 22554  555556899875  666654

>KOG1358|consensus

Probab=98.84  E-value=2.7e-07  Score=91.19  Aligned_cols=206  Identities=17%  Similarity=0.158  Sum_probs=135.3

Q ss_pred             CHHHHHHHHHHHhcccCCCc---ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSV---GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~---~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .+.+.+.+...+++.+.+.+   +.|+..+-...+.+.+|+|++       ..+.|+...| ..++..++.++++.||  
T Consensus       110 ~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G-------~E~aivYs~g-F~ti~S~ipafsKrGD--  179 (467)
T KOG1358|consen  110 NEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG-------TEDAIVYSYG-FSTIESAIPAFSKRGD--  179 (467)
T ss_pred             cHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC-------Ccceeeeccc-cchhhhcchhhhccCc--
Confidence            45788888888888665544   347776666778899999883       3445555555 5688889999999998  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhh----hccC---C-ceEEEEeCCCCCCCCCC
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA----RKHC---N-PRAIVIINPGNPTGQVL  175 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~----~~~~---~-~~~ivi~~p~NPtG~~~  175 (509)
                        .|.+.+-+....+..++...-.+..+..+       |++.|++.+.+.    .+.+   . .+.|++..-.-++|...
T Consensus       180 --Ii~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~  250 (467)
T KOG1358|consen  180 --IIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDIC  250 (467)
T ss_pred             --EEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccc
Confidence              88888888777887777766666666533       677777766432    1211   2 23455566677789998


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc-ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF-YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      +   +.+|+++..+|...||.||.|+....+..... .....+  +.    +.. -++++|++-.++ ..   .|+++  
T Consensus       251 p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v--~~----~~i-Div~~sm~~ala-s~---GgFc~--  314 (467)
T KOG1358|consen  251 P---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGV--PI----TDI-DIVTASMETALA-SG---GGFCA--  314 (467)
T ss_pred             c---cHHHHHHHhhheEEEEEecccccccccccCccccccCCC--Cc----cce-eeeeeccccccc-cc---Cceee--
Confidence            8   89999999999999999999987665431111 000000  00    012 345668777764 22   47775  


Q ss_pred             cCCHHHHHHHHHhhh
Q psy13922        255 NLDPGVKAMLHKSIS  269 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~  269 (509)
                       + ..++...+++.+
T Consensus       315 -G-~~~i~~hQrLSg  327 (467)
T KOG1358|consen  315 -G-KSFIADHQRLSG  327 (467)
T ss_pred             -c-ceeeEeeeeccc
Confidence             4 555555555544

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.79  E-value=1.7e-06  Score=87.14  Aligned_cols=220  Identities=14%  Similarity=0.135  Sum_probs=149.4

Q ss_pred             HHHHHhhc--CCCCCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHH-HHHHHHhhhcCCCCCCCcEEEeCCH
Q psy13922          9 LQVLALVS--LPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRR-HVAQYISRRDGQPADWQDVILSAGA   85 (509)
Q Consensus         9 ~~~~~~~~--~~~~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~-~va~~l~~~~g~~~~~~~i~~t~G~   85 (509)
                      +.+.|.+.  ...-+|.+.+.+.+++++..++...  -.+. |.-..|...-|- .+++.+.   + -...+.++++++.
T Consensus        20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~--v~Le-~~l~~g~~~~R~~~~~~~~~---~-~~~aea~~ivnnn   92 (395)
T COG1921          20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAP--VELE-TDLKTGKRGARLTELAELLC---G-LTGAEAAAIVNNN   92 (395)
T ss_pred             hhhhhhhhhheeccCCCccCCHHHHHHHHHHhccc--ceee-eecccchhhHHHHHHHHHHh---c-ccchhheeeECCc
Confidence            45555555  3445699999999999999998883  2332 433333232222 3333332   2 1236789999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCeEEEc----C-CCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCce
Q psy13922         86 SDGIKSVLKLLIEDVDGKKPGVLIP----I-PQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR  160 (509)
Q Consensus        86 ~~al~~~~~~l~~~gd~~~~~Vlv~----~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~  160 (509)
                      +.|+..++.++.++.     .|++.    . +...+..+.++..|++++++-...    ......++.+|.+     +++
T Consensus        93 ~aAVll~~~al~~~~-----EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne-----~ta  158 (395)
T COG1921          93 AAAVLLTLNALAEGK-----EVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINE-----NTA  158 (395)
T ss_pred             HHHHHHHHhhhccCC-----eEEEEccccccCCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhcc-----CCe
Confidence            999999999998754     44442    2 477788999999999999986543    3478999999998     788


Q ss_pred             EEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        161 AIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       161 ~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +++ +.+.|.+.=..++   .++++++|+++|+++++|.+-...+..    -+.+..+. ..+     .+++++ |-.|.
T Consensus       159 ~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~----e~~l~~~l-a~G-----aDLV~~-SgdKl  224 (395)
T COG1921         159 LLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDK----EPDLREAL-ALG-----ADLVSF-SGDKL  224 (395)
T ss_pred             eEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCcccccc----ccchhHHH-hcC-----CCEEEE-ecchh
Confidence            776 5555542222444   677899999999999999988776531    12223222 222     225544 88999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      +.   |-+-|.++   +.+++++++++..-
T Consensus       225 lg---GPqaGii~---GkKelI~~lq~~~l  248 (395)
T COG1921         225 LG---GPQAGIIV---GKKELIEKLQSHPL  248 (395)
T ss_pred             cC---CCccceEe---chHHHHHHHHhhhh
Confidence            83   66789888   99999999876533

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.55  E-value=6.9e-05  Score=75.60  Aligned_cols=161  Identities=19%  Similarity=0.276  Sum_probs=117.3

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEE--eCCHH---HHHHHHHHHhh-cCCCCCCCeEEEcCCCChhHHHHHHhcC
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVIL--SAGAS---DGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLYSASLAEFN  125 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~--t~G~~---~al~~~~~~l~-~~gd~~~~~Vlv~~p~y~~~~~~~~~~g  125 (509)
                      .+|..++...+.+||.+--|.    +.|-+  -+|++   .++ ++++.+. ..|++.|+.||+|+-.|...-..+..+|
T Consensus       104 vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGl-l~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G  178 (496)
T COG1003         104 VQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAG  178 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHH-HHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcC
Confidence            358888999999999766552    23333  23443   333 3444443 3566678899999999998889999999


Q ss_pred             CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccc
Q psy13922        126 MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY  205 (509)
Q Consensus       126 ~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~  205 (509)
                      .+|+.|+.++++  .+|++.|++...+     ++.++.|++||.- |..  .+.+.+|+++.+++|..|..|-+-..-..
T Consensus       179 ~~VV~V~~~~~G--~VDlddLk~k~~~-----~~AalMiTnPsT~-GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~v  248 (496)
T COG1003         179 FKVVVVKCDENG--NVDLDDLRAKAED-----NLAALMITNPSTL-GVF--EEDIREICEIVHEAGGQVYYDGANLNAIV  248 (496)
T ss_pred             ceEEEEecCCCC--CccHHHHHHHhcc-----ceeEEEeccCccc-ccc--hhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence            999999998876  7899999999997     8999999999763 554  47899999999999999999966543322


Q ss_pred             cCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +-  ..+      -++     +.+|+.+ -++|+|+
T Consensus       249 G~--~rP------Gd~-----G~DV~Hl-NLHKTF~  270 (496)
T COG1003         249 GL--ARP------GDM-----GFDVVHL-NLHKTFC  270 (496)
T ss_pred             cc--ccc------ccc-----ccceEEe-ecccccc
Confidence            11  000      112     2336666 8899997

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.44  E-value=9.6e-05  Score=83.16  Aligned_cols=174  Identities=14%  Similarity=0.170  Sum_probs=108.4

Q ss_pred             CCCcccCCCCc-----chH----HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCC
Q psy13922         43 GQSVGSYTDSP-----GIE----IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQ  113 (509)
Q Consensus        43 ~~~~~~Y~~~~-----g~~----~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~  113 (509)
                      ++++..|.|-+     |..    ++.+.++++.    |  .+..|.-+..+++.+.+.++.+...... ++++|+|++-.
T Consensus        90 p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt----G--m~~aNaSl~d~atA~aEa~~~a~~~~~~-~~~~vlv~~~~  162 (939)
T TIGR00461        90 PGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT----G--LPVANASLLDEGTAAAEAMALSFNVSKK-KANKFFVAKDL  162 (939)
T ss_pred             chhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH----C--CChhhhhccchhhHHHHHHHHHHHhhcC-CCCEEEECCCC
Confidence            45566677644     433    3444455544    5  5666777777888888877766543221 34589999999


Q ss_pred             ChhHHHHHH----hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q psy13922        114 YPLYSASLA----EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR  189 (509)
Q Consensus       114 y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~  189 (509)
                      |+.+...++    ..|.+++.++          ++.|++.+       ++.++++.+|+. .|.+.   ++++|++++++
T Consensus       163 hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~-------~~~~v~~q~Pn~-~G~ie---d~~~i~~~~h~  221 (939)
T TIGR00461       163 HPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV-------DVFGCLLQYPAT-DGSIL---DYKQLIDALHS  221 (939)
T ss_pred             CcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC-------CEEEEEEECCCC-CeEEe---cHHHHHHHHHH
Confidence            988776655    6688888763          33444333       266777788865 68884   69999999999


Q ss_pred             CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC----CCeeEEEeeecCCHHHHHHH
Q psy13922        190 EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC----GLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       190 ~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~----Glr~G~v~~~~~~~~~~~~l  264 (509)
                      .|.+++++.-...+.     -..+..++    +.     +++ +++ +|.| |+|    |=-.|++.   ...++...+
T Consensus       222 ~gal~~~~ad~~al~-----ll~~Pge~----Ga-----Di~-vg~-~q~f-g~p~g~GGP~aG~~a---~~~~l~r~l  280 (939)
T TIGR00461       222 HKSLVSVAADLMALT-----LLTPPGHY----GA-----DIV-LGS-SQRF-GVPMGYGGPHAAFFA---VKDEYNRKM  280 (939)
T ss_pred             cCCEEEEEechHHhC-----CcCCHHHc----CC-----cEE-eeC-CCcc-CCCCCCCCCceeeee---ecHhhHhhC
Confidence            999999854322221     12222222    22     244 644 7777 652    43478876   466666555

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.40  E-value=2.9e-05  Score=78.34  Aligned_cols=190  Identities=14%  Similarity=0.130  Sum_probs=110.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeCCHHH-HHHHHHHHhh-cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCC
Q psy13922         59 RRHVAQYISRRDGQPADWQDVILSAGASD-GIKSVLKLLI-EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES  136 (509)
Q Consensus        59 r~~va~~l~~~~g~~~~~~~i~~t~G~~~-al~~~~~~l~-~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~  136 (509)
                      -..++.-+-+..|.. .....++.+.+|. .+.+.+.++. ++   +.+.|+.+--.+.....++..+|.+++.|+...+
T Consensus        58 tn~l~~d~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~---~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~  133 (389)
T PF05889_consen   58 TNSLVLDALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRP---KAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLE  133 (389)
T ss_dssp             HHHHHHHHHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHC---T--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEE
T ss_pred             HHHHHHHHHHHcCCc-cccceEEEecccccHHHHHHHHHhccc---CCceEEEeeccccchHHHHHhcCCeEEEeeccCC
Confidence            333333333444643 2345666655553 3444455554 22   2337888877777788888999999999985432


Q ss_pred             C-CCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHH
Q psy13922        137 K-QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFK  215 (509)
Q Consensus       137 ~-~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~  215 (509)
                      + ....|++.+++.+++..+  .+.+.++++++.--|...  +++++|+++|++||++.|+..+|+.=.    .......
T Consensus       134 ~d~l~td~~~ie~~i~~~G~--~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgvQ~----~~~~~~i  205 (389)
T PF05889_consen  134 GDELITDLEAIEAKIEELGA--DNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGVQS----SKCMHLI  205 (389)
T ss_dssp             TTEEEEHHHHHHHHHHHHCG--GGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-----HHHHHHH
T ss_pred             CCeeeccHHHHHHHHHHhCC--CCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhhhH----HHHHHHH
Confidence            2 235578899999876422  456666665544334432  469999999999999999999997611    0111111


Q ss_pred             HHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        216 KVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       216 ~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      +-....++    ++++ +-|.-|.|-  -+...+.+.  +.++.++..+.+...
T Consensus       206 ~~a~~~GR----vda~-vqS~dkNF~--VPvGgai~A--s~~~~~i~~vs~~Yp  250 (389)
T PF05889_consen  206 QQAWRVGR----VDAF-VQSTDKNFM--VPVGGAIMA--SFDPSGILAVSKEYP  250 (389)
T ss_dssp             HHHHHHST----CSEE-EEEHHHHHC--EESSHEEEE--ESSHHHHHHHHHTSH
T ss_pred             HHHHhcCC----ccee-eeecCCCEE--ecCCCcEEE--ecCHHHHHHHHHHhh
Confidence            21222332    3344 568899994  666666664  478889988876543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1403|consensus

Probab=98.38  E-value=5.5e-05  Score=72.57  Aligned_cols=225  Identities=10%  Similarity=0.066  Sum_probs=132.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|+|.++....+...  ...+++-.    .++-+- |+.+...+   ..-+-++++++++||..++++..++-..  ..-
T Consensus        63 hp~VV~A~~kQmat~--~tN~RFlh----d~lv~c-A~~l~stl---PeLsvc~F~NSGSEANDLALRLAR~ftk--hqD  130 (452)
T KOG1403|consen   63 HPEVVRAGAKQMATI--STNNRFLH----DELVQC-ARTLTSTL---PELSVCFFVNSGSEANDLALRLARNFTK--HQD  130 (452)
T ss_pred             CHHHHHHHHHHHhHh--cccchhhH----HHHHHH-HHHHhhcC---CCceEEEEecCCchhhHHHHHHHHhhcc--cCc
Confidence            477888877666652  12222221    222222 22222211   1234688999999999999988754321  224


Q ss_pred             EEEcCCCChhHHHHHHhc-------C-----CEEEEEecCCC---CCCCC------C-----HHHHHHHHHhhhc-cCCc
Q psy13922        107 VLIPIPQYPLYSASLAEF-------N-----MEQIGYYLDES---KQWGL------P-----ISELERSITEARK-HCNP  159 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-------g-----~~~~~v~~~~~---~~~~~------d-----~~~L~~~i~~~~~-~~~~  159 (509)
                      ||+.+-.|+++.......       |     -+.+.+...++   ++|..      |     .+.+++.++.... .+.+
T Consensus       131 vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gv  210 (452)
T KOG1403|consen  131 VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGV  210 (452)
T ss_pred             eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcH
Confidence            777777777765432111       1     12333322211   22221      1     2345555554332 2455


Q ss_pred             eEEEEeCCCCCCCCCCCH-HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHH--HHHHhCCCCCCceeEEEEec
Q psy13922        160 RAIVIINPGNPTGQVLTK-ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK--VLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~~s~-~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~  236 (509)
                      .+.+...-+.-.|+++|+ ...+.+++..+.+|-..|.||++.+|..-|. .+.++.-  +.|+            +-++
T Consensus       211 AAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~-hyWafq~y~fiPD------------IVtm  277 (452)
T KOG1403|consen  211 AAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGS-HYWAFQTYNFIPD------------IVTM  277 (452)
T ss_pred             HHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccch-hhhhhhhhccccc------------hhee
Confidence            665556667777876555 5678999999999999999999999876532 4444432  2332            3366


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh---cccCcchhhhhc
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS---AMLCPTVLALVS  281 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~  281 (509)
                      .|.. | .|.+++.++   ..+++.+++....-   .+.+.++.++++
T Consensus       278 gKpm-G-NGhPVa~Va---ttkeIA~Af~atgv~YFNTyGGnPVsCAv  320 (452)
T KOG1403|consen  278 GKPM-G-NGHPVAAVA---TTKEIAQAFHATGVEYFNTYGGNPVSCAV  320 (452)
T ss_pred             cccC-C-CCCeeeEEe---ccHHHHHHhccccceehhccCCCchhHHH
Confidence            8999 7 999999998   79999999976332   234455554444

>KOG0629|consensus

Probab=98.34  E-value=0.00017  Score=72.50  Aligned_cols=266  Identities=14%  Similarity=0.133  Sum_probs=147.6

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCCC------CCCe-EEEcCCCChhHHH
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVDG------KKPG-VLIPIPQYPLYSA  119 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~------~~~~-Vlv~~p~y~~~~~  119 (509)
                      |....+..-..+.+-....+-.||+-..+.|+...|+.+.++.+.-+--+  |+-+      -++. +.++.-+|.+...
T Consensus       133 YEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~k  212 (510)
T KOG0629|consen  133 YEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKK  212 (510)
T ss_pred             EEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHH
Confidence            66555444344444444444447775555666666666555444333211  1100      0112 3355678889999


Q ss_pred             HHHhcC---CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEE
Q psy13922        120 SLAEFN---MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLF  195 (509)
Q Consensus       120 ~~~~~g---~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI  195 (509)
                      ++..+|   -.++.|+.++.+  .++++.||+.|.......-+..++ .+.-...-|..   ++|..|+++|++|++|+.
T Consensus       213 aAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~lWmH  287 (510)
T KOG0629|consen  213 AAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHKLWMH  287 (510)
T ss_pred             HHHHhccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcCEEEE
Confidence            999988   678888888775  789999999997653321222333 34555666777   669999999999999999


Q ss_pred             EcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcc
Q psy13922        196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPT  275 (509)
Q Consensus       196 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~  275 (509)
                      +|.+|.+...=+. .+..   ......    ..+.+ .++.+|.. | ..+..+.+++  ....+..+-.....      
T Consensus       288 vDAAwGGglLmS~-k~R~---kl~Gie----ra~Sv-twnpHK~~-g-aplqCsa~l~--r~~gll~~Cn~~~A------  348 (510)
T KOG0629|consen  288 VDAAWGGGLLMSR-KHRH---KLTGIE----RANSV-TWNPHKLM-G-APLQCSAFLT--REEGLLQRCNQMSA------  348 (510)
T ss_pred             eecccccccccCh-hhHh---hccCcc----ccCce-eecHHHhh-c-CcchhhHHHH--HHHHHHHhhcccch------
Confidence            9999987322111 1111   111111    22344 34778999 6 5666666642  44444433322211      


Q ss_pred             hhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH-------HHHHHHHHHHHH
Q psy13922        276 VLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE-------KQSVLDSLKQRA  348 (509)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  348 (509)
                        ..+.-.....|-+|..                  +-.++.....     -.-|.-|..|       .++.++++.+++
T Consensus       349 --~YLFq~dK~YdvS~DT------------------gdK~iQCGRh-----~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA  403 (510)
T KOG0629|consen  349 --IYLFQQDKFYDVSYDT------------------GDKAIQCGRH-----VDVFKLWLMWKAKGTQGFEAQVDKCLRLA  403 (510)
T ss_pred             --hhhhccCceeeccccc------------------ccchhhcCcc-----ccHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence              1111112222222221                  1111111111     0012223333       477888999999


Q ss_pred             HHHHHHHhcCCCCee
Q psy13922        349 KMVADTFNSIEGMSC  363 (509)
Q Consensus       349 ~~l~~~L~~~~g~~~  363 (509)
                      +++.+.|++-++...
T Consensus       404 ~yl~~~lrer~~~~~  418 (510)
T KOG0629|consen  404 EYLYDRLREREGFEM  418 (510)
T ss_pred             HHHHHHHHhccccee
Confidence            999999999866543

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.30  E-value=5.4e-05  Score=72.74  Aligned_cols=181  Identities=21%  Similarity=0.272  Sum_probs=123.1

Q ss_pred             CCCC-cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEE-cCCCChhHHH-------
Q psy13922         49 YTDS-PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLI-PIPQYPLYSA-------  119 (509)
Q Consensus        49 Y~~~-~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv-~~p~y~~~~~-------  119 (509)
                      |+-. -|-.-|..-.|+-+    |.....-+.-+.+|+ .||.+++..+++|||    +++. ..--|....+       
T Consensus        60 YGydD~GRdtLe~vyA~vf----~aE~a~VRpq~isGT-HAI~~aLfg~LRpgD----ell~i~G~PYDTLeevIG~rg~  130 (416)
T COG4100          60 YGYDDLGRDTLERVYAQVF----GAEAALVRPQIISGT-HAIACALFGILRPGD----ELLYITGSPYDTLEEVIGLRGE  130 (416)
T ss_pred             CCccccchhHHHHHHHHHh----ccccceeeeeeecch-hHHHHHHHhccCCCC----eEEEecCCcchhHHHHhccCCC
Confidence            5442 35455666666665    322111134455655 799999999999999    7663 3333444433       


Q ss_pred             ---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHH--CCcE
Q psy13922        120 ---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHR--EKLF  193 (509)
Q Consensus       120 ---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NPtG~~~s~~~l~~l~~ia~~--~~i~  193 (509)
                         .++..|.....+|+..++  .+|.+.+...++.     ++|+|-|. +...----.++.+++++++++.|+  .|++
T Consensus       131 ~~gSL~dfgi~Y~~v~Lt~~g--kiD~~~v~~~i~~-----~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~i  203 (416)
T COG4100         131 GQGSLKDFGIKYKAVPLTADG--KIDIQAVKTAISD-----RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVI  203 (416)
T ss_pred             CcccHHHhCcceeecccccCC--cccHHHHHHhcCc-----cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEE
Confidence               356678888899998665  8899999999998     89999885 332222225777899999999988  4799


Q ss_pred             EEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC--eeEEEeeecCCHHHHHHHH
Q psy13922        194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL--RGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       194 lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl--r~G~v~~~~~~~~~~~~l~  265 (509)
                      +++|.+|+.|+-.-+  +..+       +.      -+.-+|+-|.- | .|+  -.||++   +..+++++-.
T Consensus       204 vFVDNCYGEFvE~~E--Pt~v-------Ga------DliAGSLIKNp-G-GgiaktGGYia---Gk~~~ve~~~  257 (416)
T COG4100         204 VFVDNCYGEFVEEKE--PTHV-------GA------DLIAGSLIKNP-G-GGIAKTGGYIA---GKAELVEAAA  257 (416)
T ss_pred             EEEeccchhhhhccC--cccc-------ch------hhhccceeeCC-C-Cceeeccceee---chHHHHHhhc
Confidence            999999999986532  2211       11      13367999988 5 676  478887   7888887653

>KOG0628|consensus

Probab=98.27  E-value=0.0022  Score=65.45  Aligned_cols=152  Identities=16%  Similarity=0.188  Sum_probs=100.9

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCC--------CCCcEEEeCCHHHHHHHHHHHhh-----c--CCC--------CCCC
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPA--------DWQDVILSAGASDGIKSVLKLLI-----E--DVD--------GKKP  105 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~--------~~~~i~~t~G~~~al~~~~~~l~-----~--~gd--------~~~~  105 (509)
                      +....-..+|..-+.+|+.+.++.+.        +...|+.++.+ ++...++.+.+     +  .+.        .++-
T Consensus       105 W~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tas-es~lvallaaR~~~i~~~k~~~p~~~e~~~~~~l  183 (511)
T KOG0628|consen  105 WASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTAS-ESVLVALLAARTEKIEEIKSRPPELHESSVLARL  183 (511)
T ss_pred             eecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcc-hhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhh
Confidence            33344558999999999998887541        22245555544 44333333321     1  110        0011


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .+-+++-.+.+....+...|+++..++.+.  +|+++.+.|+++|++.....-+..+++.+... ||.+ +-+++.+|..
T Consensus       184 V~Y~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~GT-T~~c-a~D~l~elg~  259 (511)
T KOG0628|consen  184 VAYCSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATLGT-TSSC-AFDELEELGP  259 (511)
T ss_pred             eEEecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEeecC-cccc-ccccHHHhcc
Confidence            345677788888888888999999998876  78999999999999864433444555433322 2222 3368999999


Q ss_pred             HHHHCCcEEEEcccCCcccc
Q psy13922        186 FAHREKLFLFADEVYQDNVY  205 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~  205 (509)
                      +|+++++|+.+|.+|.+-.+
T Consensus       260 Vc~~~glWLHVDAAYAGsa~  279 (511)
T KOG0628|consen  260 VCREEGLWLHVDAAYAGSAF  279 (511)
T ss_pred             hhhhcCEEEEeehhhccccc
Confidence            99999999999999986443

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.24  E-value=0.00021  Score=71.03  Aligned_cols=284  Identities=12%  Similarity=0.050  Sum_probs=145.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC-----cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS-----VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~-----~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      |+.-+|+.|++.+.+.+.+..+..     .+ .....+ ..+-+...+.+++.++++-+.+=+++-.|+|....++...|
T Consensus        12 GPa~lp~~vL~~a~~e~~~~~g~g~svme~S-HRsk~~-~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nL   89 (365)
T COG1932          12 GPAALPPEVLQQAQKELLDWNGLGMSVMEIS-HRSKEF-KNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNL   89 (365)
T ss_pred             CcccCCHHHHHHHHHHHhhhccCCcceeeec-cccHHH-HHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhh
Confidence            666789999999988888854311     11 111122 33444444555555565544444555577799999999999


Q ss_pred             hcCCCCCCCe--EEEcCCCChhHHHHHHhcCC--EEEEEecCCC-CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922         97 IEDVDGKKPG--VLIPIPQYPLYSASLAEFNM--EQIGYYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus        97 ~~~gd~~~~~--Vlv~~p~y~~~~~~~~~~g~--~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                      .....    .  |......-..+..+ +..+.  ++........ .+.-++++...  +.+     +...|+++.=.-.+
T Consensus        90 l~~~~----~~yv~~g~Ws~~a~~eA-~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-----~~ayv~~~~NeTi~  157 (365)
T COG1932          90 LGKRG----TDYVDTGAWSEFAIKEA-KKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-----NDAYVHFCWNETIS  157 (365)
T ss_pred             hcccC----ceeEeeeehhHhHHHHH-HHhcccccccccceeccCccCCCChhhcc--cCC-----CccEEEEecCCccc
Confidence            87653    3  44444433333333 33332  2222221111 12234444432  222     33335555334445


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      |+.++.  ...+..     +.++|+|..-..+..     ...+..+           .+|+. |.=|.+ |..|  ++.+
T Consensus       158 Gv~v~~--~p~~~~-----~~~~v~D~SS~ilsr-----~iDvsk~-----------dviya-gaQKnl-GpaG--ltvv  210 (365)
T COG1932         158 GVEVPE--LPDIGS-----DGLLVADASSAILSR-----PIDVSKY-----------DVIYA-GAQKNL-GPAG--LTVV  210 (365)
T ss_pred             ceEccC--CCCCCC-----CceEEEecccHHhcC-----CCChhHc-----------ceEEE-ehhhcc-Cccc--eEEE
Confidence            776551  222211     278999976655432     2333332           27766 889999 8888  6766


Q ss_pred             eeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      +   -++.++++.....    .|+.+                   .+...+.+++|-+.....+...+..     .-.|-
T Consensus       211 I---vr~~~l~r~~~~~----~P~if-------------------~y~~~~~~~s~yNTPptfa~y~~~l-----v~~Wl  259 (365)
T COG1932         211 I---VRPDLLERAESYT----LPSIF-------------------DYLTHADNGSMYNTPPTFAWYLLGL-----VFKWL  259 (365)
T ss_pred             E---EcHHHHhcccccC----CchHh-------------------hchhhhccCCccCCcHHHHHHHHHH-----HHHHH
Confidence            6   4888888776532    12211                   1111223333333333333322211     00011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee--c-cCCceeEEeecCC
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSC--N-PVQGAMYAFPQMK  377 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~-~~~~g~~~~~~~~  377 (509)
                      .-..-++.+.++-++..+.|++.+.+-+-++-  . ...+.+.+.+++.
T Consensus       260 k~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~  308 (365)
T COG1932         260 KSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLV  308 (365)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcC
Confidence            11112677888888889999999988632221  1 2344555554443

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.20  E-value=0.00028  Score=72.97  Aligned_cols=131  Identities=23%  Similarity=0.296  Sum_probs=79.8

Q ss_pred             CCcccCCC-----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH
Q psy13922         44 QSVGSYTD-----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS  118 (509)
Q Consensus        44 ~~~~~Y~~-----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~  118 (509)
                      ++++.|.|     ++|..+..-.....+.+..|.+  ..|.=+-.|++.+-+.+..+...... ++++|+++.-.|+.+.
T Consensus        92 ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmd--vaNaSlyd~atA~aEa~~ma~r~~~~-~~~~vlv~~~~hP~~~  168 (429)
T PF02347_consen   92 EFYTAYTPYQPEISQGRLQALFEYQSMICELTGMD--VANASLYDGATAAAEAMLMAVRATKR-KRNKVLVPESLHPQTR  168 (429)
T ss_dssp             HCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSS--EE-SEBSSCCHHHHHHHHHHHHHHTT----EEEEETTS-CHHH
T ss_pred             hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCC--ccCCCCCChhHHHHHHHHHHHHhccc-CCcEEEEcCCcChhhH
Confidence            34445655     4565554444455554444633  33344555666666555555433322 3458999999999888


Q ss_pred             HHHH----hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEE
Q psy13922        119 ASLA----EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL  194 (509)
Q Consensus       119 ~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~l  194 (509)
                      ..++    ..|.+++.++.++.+  ..|        .+     ++.+|++.+||. .|.+   +++++|+++++++|.++
T Consensus       169 ~v~~t~a~~~g~~iv~~~~~~~~--~~d--------~~-----~~a~v~vq~Pn~-~G~~---ed~~~i~~~~h~~gal~  229 (429)
T PF02347_consen  169 AVLRTYAAPLGIEIVEVPLDEDG--TTD--------DD-----DTAAVMVQNPNT-FGVF---EDIKEIADIAHAAGALV  229 (429)
T ss_dssp             HHHHHHCCHCCEEEEEE-BBTTC--SB---------ST-----TEEEEEEESS-T-TSB-----THHHHHHHHHHTT-EE
T ss_pred             HHHHHhhhhCCeEEEEecccccC--Ccc--------cc-----CeEEEEeecCCC-CceE---eeHHHHHHHHHHcCCEE
Confidence            7554    369999999987653  223        23     799999999986 6888   55999999999999998


Q ss_pred             EE
Q psy13922        195 FA  196 (509)
Q Consensus       195 I~  196 (509)
                      ++
T Consensus       230 ~~  231 (429)
T PF02347_consen  230 IV  231 (429)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.14  E-value=8.9e-07  Score=88.43  Aligned_cols=213  Identities=16%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHH-HHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         20 LFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIR-RHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        20 ~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr-~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      -+|...+++.+++++.+.....   ....|.-..|-..-| ..+.+++...    ...+..+++++...|+.+++.++..
T Consensus        12 nLGRs~l~~~a~~a~~~~a~~Y---~nLE~dl~~G~Rg~R~~~v~~ll~~l----tgAeaA~VvNnnaAAv~L~l~~la~   84 (367)
T PF03841_consen   12 NLGRSPLSEEAIEAVAEVASGY---SNLEYDLETGKRGSRYAHVEELLCEL----TGAEAALVVNNNAAAVLLALNTLAK   84 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccc---cccccccccccccccccccccccccc----ccccccccccccccccccccccccc
Confidence            3588889999999998877761   111243332322222 2223333222    2356788888888999999888864


Q ss_pred             CCCCCCCeEEEcCCCCh------hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-
Q psy13922         99 DVDGKKPGVLIPIPQYP------LYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-  171 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~------~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-  171 (509)
                      . .    .|++.--.-.      ...+.++..|+++++|=...    ...+++++++|.+     ++.+|+-.+++|-. 
T Consensus        85 ~-~----EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e-----~Ta~ll~Vh~Sn~~i  150 (367)
T PF03841_consen   85 G-K----EVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITE-----NTAALLKVHTSNFRI  150 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-c----cccccccccccccccccccccccccccccccccccc----ccccccccccccc-----ccccccccccccccc
Confidence            3 2    6776532211      24567788899999986542    3457889999998     79888777777763 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcEEEEcccCCccccc---CCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        172 -GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA---EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       172 -G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                       |..-. -.++++++++++||+++++|..-+.+..-   +-..-+++..... .     +.+++++ |-.|.+ |  |-.
T Consensus       151 ~GFt~~-~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~-----GaDlV~f-SGdKlL-G--GPQ  219 (367)
T PF03841_consen  151 QGFTGE-VSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-A-----GADLVTF-SGDKLL-G--GPQ  219 (367)
T ss_dssp             -----------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-C-----T-SEEEE-ETTSSS-S--S-S
T ss_pred             cccccc-ccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-c-----CCCEEEE-ECCCcC-C--CCC
Confidence             33211 25899999999999999999765333210   0000112222211 1     2335544 779999 4  334


Q ss_pred             eEEEeeecCCHHHHHHHHHh
Q psy13922        248 GGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~  267 (509)
                      .|.++   +.+++++++++.
T Consensus       220 aGiI~---Gkk~lI~~lk~~  236 (367)
T PF03841_consen  220 AGIIV---GKKELIEKLKKH  236 (367)
T ss_dssp             -EEEE---EEHHHHHHHHHH
T ss_pred             eEEEE---eCHHHHHHHhhC
Confidence            68887   999999999864

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG1405|consensus

Probab=98.05  E-value=0.00014  Score=71.50  Aligned_cols=115  Identities=16%  Similarity=0.233  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhhhcc-CCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHH
Q psy13922        143 ISELERSITEARKH-CNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVE  220 (509)
Q Consensus       143 ~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~  220 (509)
                      ++++|+.|.+..++ ..+.+||+..-+...|- --|++..+.|.+++++|++.+|+||++.+..-+|  ++.......-+
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG--k~WaHehw~l~  332 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG--KFWAHEHWNLD  332 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC--ceeeehhcCCC
Confidence            67788888877654 35667777666777774 8899999999999999999999999998866554  23332222111


Q ss_pred             hCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH-HHHhhhcccCcch
Q psy13922        221 MGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM-LHKSISAMLCPTV  276 (509)
Q Consensus       221 ~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~-l~~~~~~~~~~~~  276 (509)
                      ..     .+++   +|||-+-  .|   ||.    .+++++-. -.+...+|.+-+.
T Consensus       333 ~P-----pD~v---TFSKK~q--~g---Gff----h~~~frpn~pYrifNTWmGdP~  372 (484)
T KOG1405|consen  333 SP-----PDVV---TFSKKFQ--TG---GFF----HDEEFRPNEPYRIFNTWMGDPS  372 (484)
T ss_pred             CC-----ccce---ehhhhhh--cC---ccc----cCcccCCCchHHHhhhhcCChH
Confidence            11     1233   7799883  44   666    46666642 3333344544443

>KOG3843|consensus

Probab=97.96  E-value=0.00054  Score=64.78  Aligned_cols=181  Identities=13%  Similarity=0.062  Sum_probs=102.8

Q ss_pred             cCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEec-CCCCCCCCCHHHHHH
Q psy13922         70 DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL-DESKQWGLPISELER  148 (509)
Q Consensus        70 ~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~L~~  148 (509)
                      .|.+.-.+.+++.--+-..+.+.+.+++....+.+=.||.-.-.- +....+-.+|++++-+.. .+......|++.+++
T Consensus        70 ~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqk-s~~ksi~~agfepiiie~i~d~d~l~tdleav~~  148 (432)
T KOG3843|consen   70 AGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQK-SCFKSIIHAGFEPIIIENILDGDELITDLEAVEA  148 (432)
T ss_pred             hhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchH-HHHHHHHhcCCCceeeeccccchHHHHhHHHHHH
Confidence            366655666666533334566777777654432222344444332 333444557888777643 333334568999999


Q ss_pred             HHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCc
Q psy13922        149 SITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM  228 (509)
Q Consensus       149 ~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (509)
                      .+++.    ...+|+...-....=..-+++.+++|+.||..|+++-|+..+|+.-.    ++......-..++++.    
T Consensus       149 ~iee~----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqs----ee~i~~iaa~~~~gri----  216 (432)
T KOG3843|consen  149 IIEEL----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQS----EECIHKIAAAAECGRI----  216 (432)
T ss_pred             HHHHh----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccch----HHHHHHHHHHhhhccH----
Confidence            88875    56655532111111123455889999999999999999999997521    1112222223344432    


Q ss_pred             eeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhh
Q psy13922        229 ELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       229 ~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                      +.+ +-|+-|.|. .   ++|..++.+-+..++..+.+..
T Consensus       217 da~-vqsldknf~-v---pvggaiia~fk~n~iq~iak~y  251 (432)
T KOG3843|consen  217 DAF-VQSLDKNFM-V---PVGGAIIAAFKDNFIQEIAKMY  251 (432)
T ss_pred             HHH-HHHhhhcce-e---ecchhHhhHhHHHHHHHHHHhC
Confidence            122 458999994 3   4555543223556666665543

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.75  E-value=0.021  Score=58.12  Aligned_cols=132  Identities=19%  Similarity=0.227  Sum_probs=88.2

Q ss_pred             CCCcccCCCCc-----chH----HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCC
Q psy13922         43 GQSVGSYTDSP-----GIE----IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQ  113 (509)
Q Consensus        43 ~~~~~~Y~~~~-----g~~----~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~  113 (509)
                      +.++..|.|-+     |..    ++..-++++.    |  .+..|-=+--++|.+-+.+..+..-... ++++++++.-+
T Consensus       101 pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT----G--m~VANASm~DeaTAaAEAm~ma~r~~k~-k~~~~~V~~~v  173 (450)
T COG0403         101 PEWYTAYTPYQPEISQGRLEALFEFQTLVADLT----G--LDVANASMLDEATAAAEAMLMAKRVTKK-KRNKFLVPKDV  173 (450)
T ss_pred             ccccccCCCCchhhhhHHHHHHHHHHHHHHHHh----C--CCcccchhhhhHHHHHHHHHHHHHhhcC-cCceEEecCCC
Confidence            56788888855     322    2333444444    5  3344444445666665555555544332 35699999999


Q ss_pred             ChhHHHHHHhc----CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q psy13922        114 YPLYSASLAEF----NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR  189 (509)
Q Consensus       114 y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~  189 (509)
                      |+.+...++..    |.+++.++.+       |++.|+.. ...    .+.++++..|+. .|..  .+++.+|.+.+++
T Consensus       174 hpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~~~----~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~  238 (450)
T COG0403         174 HPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-DDG----DVFGVLVQYPNT-FGIV--EEDLRALIEAAHS  238 (450)
T ss_pred             CHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-ccc----CeEEEEEecCCC-CCcc--chhHHHHHHHHhh
Confidence            99998887643    6777777654       67777777 432    688999988874 5632  2569999999999


Q ss_pred             CCcEEEE
Q psy13922        190 EKLFLFA  196 (509)
Q Consensus       190 ~~i~lI~  196 (509)
                      ++.++++
T Consensus       239 ~~al~~v  245 (450)
T COG0403         239 AGALVIV  245 (450)
T ss_pred             cCCEEEE
Confidence            9988776

>KOG2467|consensus

Probab=97.74  E-value=0.0069  Score=60.12  Aligned_cols=144  Identities=18%  Similarity=0.172  Sum_probs=87.0

Q ss_pred             cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEc-CC--CChhHHHHH--HhcC-----CEEEEEecCCCCCCCCCHHHHH
Q psy13922         78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIP-IP--QYPLYSASL--AEFN-----MEQIGYYLDESKQWGLPISELE  147 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~-~p--~y~~~~~~~--~~~g-----~~~~~v~~~~~~~~~~d~~~L~  147 (509)
                      ||-.-+|+ .|...+..++++|++    +|.-. -|  .|-.+-..-  +.-.     ++-.++.++++ +.-+|.|.||
T Consensus       109 NVQp~SGS-PANfavYtall~Ph~----RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~-TG~IDYD~Le  182 (477)
T KOG2467|consen  109 NVQPYSGS-PANFAVYTALLKPHE----RIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPS-TGYIDYDKLE  182 (477)
T ss_pred             eeccCCCC-chhhHHHhhhcCCCC----eeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCC-CCceehHHHH
Confidence            55556666 577789999999998    76533 23  332221111  1111     12223334444 3368999999


Q ss_pred             HHHHhhhccCCceEEEEeCCCCCCCCCCCHH-HHHHHHHHHHHCCcEEEEcccCCc-ccccCCCccccHHHHHHHhCCCC
Q psy13922        148 RSITEARKHCNPRAIVIINPGNPTGQVLTKE-NIQDIIKFAHREKLFLFADEVYQD-NVYAEGSKFYSFKKVLVEMGEPY  225 (509)
Q Consensus       148 ~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~-~l~~l~~ia~~~~i~lI~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~  225 (509)
                      +.-...    +|++||.-.      ..|++. +..++.+||.+-|.+++.|-++.. ++-.+  ..++..          
T Consensus       183 ~~A~~f----rPk~iiaG~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~--vipsPF----------  240 (477)
T KOG2467|consen  183 KTATLF----RPKLIIAGT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAG--VIPSPF----------  240 (477)
T ss_pred             HHHHhc----CCcEEEecc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcc--cCCCcc----------
Confidence            988876    899988532      233322 477888899999999999998854 22221  112222          


Q ss_pred             CCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        226 KSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       226 ~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ++.+++. .+.+|++   -|-|.|.+-+
T Consensus       241 ey~DiVT-TTTHKsL---RGPRg~mIFy  264 (477)
T KOG2467|consen  241 EYCDIVT-TTTHKSL---RGPRGAMIFY  264 (477)
T ss_pred             cccceee-ccccccc---cCCcceeEEE
Confidence            2333554 4779977   5778888764

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.05  E-value=0.081  Score=59.98  Aligned_cols=125  Identities=13%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             CCCcccCCCCc-----chH----HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCC
Q psy13922         43 GQSVGSYTDSP-----GIE----IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQ  113 (509)
Q Consensus        43 ~~~~~~Y~~~~-----g~~----~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~  113 (509)
                      ++++..|.|-+     |..    ++...++++.    |.  +..|-=+--|+|.+-+.++.+..-... ++++|+|+.-.
T Consensus       105 ~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt----Gm--~vaNASl~D~atA~aEA~~ma~~~~~~-k~~~~~v~~~~  177 (954)
T PRK12566        105 PGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT----GL--DLANASLLDEATAAAEAMALAKRVAKS-KSNRFFVDEHC  177 (954)
T ss_pred             chhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh----Cc--hhhhhhhccchhHHHHHHHHHHHHhhc-CCCEEEECCCC
Confidence            45666777744     333    3334444444    43  333332333444333333333322221 24589999999


Q ss_pred             ChhHHHHHH----hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q psy13922        114 YPLYSASLA----EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR  189 (509)
Q Consensus       114 y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~  189 (509)
                      |+.+...++    ..|++++.             +.+++.+..     ++.++++.+||. .|.+   +++++|++++++
T Consensus       178 hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~-----~~~~v~vq~P~~-~G~i---~d~~~i~~~~h~  235 (954)
T PRK12566        178 HPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAH-----AVFGALLQYPDT-HGEI---RDLRPLIDQLHG  235 (954)
T ss_pred             CHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCC-----CEEEEEEECCCC-ceEE---ccHHHHHHHHHH
Confidence            988877665    34777664             222233333     588888888875 6887   569999999999


Q ss_pred             CCcEEEE
Q psy13922        190 EKLFLFA  196 (509)
Q Consensus       190 ~~i~lI~  196 (509)
                      .|.++|+
T Consensus       236 ~gal~~~  242 (954)
T PRK12566        236 QQALACV  242 (954)
T ss_pred             cCCEEEE
Confidence            9988764

>PLN02672 methionine S-methyltransferase

Probab=96.00  E-value=0.18  Score=58.33  Aligned_cols=210  Identities=16%  Similarity=0.075  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC---CCCCCCe
Q psy13922         30 VKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED---VDGKKPG  106 (509)
Q Consensus        30 v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---gd~~~~~  106 (509)
                      .+..+...++.   ..+.-|.++.|...+|..||.|++..|++++++++|++.++-..|++.+++.+.-.   -| +.-+
T Consensus       406 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  481 (1082)
T PLN02672        406 FLAYLASALKG---LSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVD-EHLT  481 (1082)
T ss_pred             HHHHHHHHHcc---CCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhh-hhhh
Confidence            34455666666   66777999999999999999999999999999999999999999999999887421   11 0001


Q ss_pred             EEEcCCCChhHHHHHHhcC--------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        107 VLIPIPQYPLYSASLAEFN--------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g--------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      -.++    .-|...+..-|        ..+ .|-..+.     ..+.+.+++++.    ++++++..--.   +-..+..
T Consensus       482 ~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~  544 (1082)
T PLN02672        482 RWLP----KKWLTSLAIENATSDSKSDDVI-TVIEAPR-----QSDLVIELIKKL----KPQVVVTGMAD---FEMRTST  544 (1082)
T ss_pred             ccCC----HHHHhHhhhhcccccCccCCeE-EEEeCCC-----cchHHHHHHHhC----CCeEEEEeccc---hhhhhHH
Confidence            1111    11222222111        222 2211111     234677788876    78888865332   3344556


Q ss_pred             HHHHHHHHHHHCCcEEEEcccC-CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        179 NIQDIIKFAHREKLFLFADEVY-QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      ..+.|.+.+++-|+.++.|..- -.+.  +......+..+...-..   ..+..++.++-|.- =.+.+.+.+++  +-+
T Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~  616 (1082)
T PLN02672        545 AFEHLLNVTAEIGARLFLDISDHLELS--SLPGSNGVLKYLAGHPL---PSHAAIICGLVKNQ-VYSDLEVAFVI--SEN  616 (1082)
T ss_pred             HHHHHHHHHHhhCcEEEEehhhheeec--cCCCcccHHHHhcCCCC---CcchhHhhhhhhcc-ccccceEEEEe--cCc
Confidence            7899999999999999999763 3322  22223344444322111   12344455787766 36899999996  356


Q ss_pred             HHHHHHHHHhh
Q psy13922        258 PGVKAMLHKSI  268 (509)
Q Consensus       258 ~~~~~~l~~~~  268 (509)
                      ..+...+.+..
T Consensus       617 ~~~~~~~~~~~  627 (1082)
T PLN02672        617 EAVLKALSKTG  627 (1082)
T ss_pred             HHHHHHHHHHH
Confidence            67777776543

>KOG2790|consensus

Probab=95.77  E-value=1.2  Score=43.35  Aligned_cols=202  Identities=14%  Similarity=0.041  Sum_probs=107.3

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcc----cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVG----SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~----~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      |+..+|+.|+..+.+-+-+..+...+    +..+.+. ..+.+.....+++.+.++-.-+-+++-.|+|.-+..+...|.
T Consensus        14 GPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f-~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~   92 (370)
T KOG2790|consen   14 GPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDF-AKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLI   92 (370)
T ss_pred             CcccCCHHHHHHHHHHhhccCCCcceEEEecccchhH-HHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhh
Confidence            66779999999888877774432221    0122222 344555555555555544333334556777888887777776


Q ss_pred             --cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCC--CCCHHHHHHHHHhhhccCCceEEEEeCCCCCC--
Q psy13922         98 --EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQW--GLPISELERSITEARKHCNPRAIVIINPGNPT--  171 (509)
Q Consensus        98 --~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~--~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt--  171 (509)
                        +.|+ ..+-|++..++--.+.++-+......+.++..+. .|  -+|.+.++.  ..     +.+.++.|  .|.|  
T Consensus        93 glK~g~-~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y-~ygkvPd~~~w~~--~~-----da~yvyyC--aNETVH  161 (370)
T KOG2790|consen   93 GLKHGR-CADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSY-TYGKVPDPSTWEL--NP-----DASYVYYC--ANETVH  161 (370)
T ss_pred             ccccCC-ccceEEeccccHHHHHHHHhhCCceEEecccccc-ccCcCCChhhccc--CC-----CccEEEEe--cCceee
Confidence              3442 2235777776666666655544555665555433 22  245554432  11     34555555  4444  


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      |+-++.-.      .-.-.+.++|.|-.--.+.     .+..+...            -+++.+.-|.+ |++|+.+=.+
T Consensus       162 GVEf~~~P------~~~~~~~vlVaDmSSnflS-----rpvDvsk~------------gvi~aGAQKN~-G~aG~Tvviv  217 (370)
T KOG2790|consen  162 GVEFDFIP------VNDPKGAVLVADMSSNFLS-----RPVDVSKF------------GVIFAGAQKNV-GPAGVTVVIV  217 (370)
T ss_pred             ceecCCCC------CCCCCCceEEEecccchhc-----CCccchhc------------ceEEecccccc-CccccEEEEE
Confidence            55433111      1123578888885443322     12222221            34466779999 8998754433


Q ss_pred             eeecCCHHHHHHH
Q psy13922        252 EVINLDPGVKAML  264 (509)
Q Consensus       252 ~~~~~~~~~~~~l  264 (509)
                           ...++...
T Consensus       218 -----r~dllg~~  225 (370)
T KOG2790|consen  218 -----RKDLLGNA  225 (370)
T ss_pred             -----ehhhhccc
Confidence                 55555433

>KOG2040|consensus

Probab=95.73  E-value=3.8  Score=44.29  Aligned_cols=143  Identities=19%  Similarity=0.312  Sum_probs=99.4

Q ss_pred             cCCCC---cchHHHHHHHHHHHhhhcCCCCCCCcEEEe--CCH---HHHHHHHHHHh-hcCCCCCCCeEEEcCCCChhHH
Q psy13922         48 SYTDS---PGIEIIRRHVAQYISRRDGQPADWQDVILS--AGA---SDGIKSVLKLL-IEDVDGKKPGVLIPIPQYPLYS  118 (509)
Q Consensus        48 ~Y~~~---~g~~~lr~~va~~l~~~~g~~~~~~~i~~t--~G~---~~al~~~~~~l-~~~gd~~~~~Vlv~~p~y~~~~  118 (509)
                      -|.|.   +|+.++-..+.+.|-.--|    -+.+-+-  +|+   ..++ .+++++ ...|++.+...++|...|...-
T Consensus       570 PF~P~eQaqGY~~lf~~Le~~Lc~iTG----~D~~s~QPNsGA~GEYaGL-~~IRaY~~~kge~hRnvClIPvSAHGTNP  644 (1001)
T KOG2040|consen  570 PFAPVEQAQGYQQLFTELEKDLCEITG----FDSFSLQPNSGAQGEYAGL-RVIRAYLESKGEGHRNVCLIPVSAHGTNP  644 (1001)
T ss_pred             CCCchHHHhhHHHHHHHHHHHhheeec----ccceeecCCCCcccchhhH-HHHHHHHHhccCCcceeEEEeecccCCCh
Confidence            35553   4767777777766644333    2334332  232   3344 334444 3456655666778888888888


Q ss_pred             HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc
Q psy13922        119 ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE  198 (509)
Q Consensus       119 ~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~De  198 (509)
                      ..+..+|.++++|..+..+  .+|...|....+++.+  +..++.++.|+.- |+.  .+.+++++++.+++|--|..|-
T Consensus       645 ASA~MagmkvvpV~~~~~G--~id~~dLk~kaekh~~--~Laa~MvTYPST~-Gvf--E~~i~d~cd~iHehGGQVYlDG  717 (1001)
T KOG2040|consen  645 ASAAMAGMKVVPVGCDANG--NIDMVDLKAKAEKHKD--NLAALMVTYPSTH-GVF--EEGIDDICDIIHEHGGQVYLDG  717 (1001)
T ss_pred             hhHHhcCCEEEEeeccCCC--CccHHHHHHHHHHhhh--hhheeEEeccccc-ccc--cccHHHHHHHHHhcCCEEEecC
Confidence            8899999999999988665  7899999988776544  6788888888653 443  2569999999999999999997


Q ss_pred             cCCc
Q psy13922        199 VYQD  202 (509)
Q Consensus       199 ay~~  202 (509)
                      +-..
T Consensus       718 ANMN  721 (1001)
T KOG2040|consen  718 ANMN  721 (1001)
T ss_pred             CCcc
Confidence            7544

>KOG3846|consensus

Probab=91.84  E-value=14  Score=36.46  Aligned_cols=163  Identities=15%  Similarity=0.087  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHhccc---C-CCcc-cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         27 PDDVKQRAQAVLDGCR---G-QSVG-SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~---~-~~~~-~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |-...+.+.+-+.++.   . ++.. .-+-..+....-.-++...    |  ...++|.+.++-|-.++.++.++.+|..
T Consensus        80 PK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iV----G--A~e~EvavmNsLTvNlh~Ll~sFyKPTe  153 (465)
T KOG3846|consen   80 PKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIV----G--AQENEVAVMNSLTVNLHSLLISFYKPTE  153 (465)
T ss_pred             chhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhc----c--CCchhhhhHhhhhhHHHHHHHHhcCCcc
Confidence            6666666766666621   1 1111 1122334445555566555    3  5678999999999999999999999986


Q ss_pred             CCCCeEEEcCCCChh----HHHHHHhcCCEE----EEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922        102 GKKPGVLIPIPQYPL----YSASLAEFNMEQ----IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~----~~~~~~~~g~~~----~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                       ++-+|+...-.|++    +...++..|..+    +.+... ++.-.+-.+.+.+.|++.++  ...+|.++..+.-||+
T Consensus       154 -kR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePR-EGEetlRteDILd~IEkngD--eiA~v~fSGvqyYTGQ  229 (465)
T KOG3846|consen  154 -KRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPR-EGEETLRTEDILDTIEKNGD--EIALVCFSGVQYYTGQ  229 (465)
T ss_pred             -hhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccc-ccccchhHHHHHHHHHhcCC--eEEEEEeecceeeccc
Confidence             55578888766665    344455556542    222221 12224556777778876433  4666677999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCc
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQD  202 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~  202 (509)
                      .++   +.+|...-+..|++|=.|-++..
T Consensus       230 ~Fd---i~aIT~Agq~kgc~VGfDLAHAv  255 (465)
T KOG3846|consen  230 YFD---IGAITFAGQFKGCLVGFDLAHAV  255 (465)
T ss_pred             ccc---hhhhhhcccCCCcEechhhhhhh
Confidence            988   77777555556899988887765

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=91.54  E-value=7.8  Score=36.49  Aligned_cols=156  Identities=16%  Similarity=0.121  Sum_probs=95.8

Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEc---CC-CCh-------hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHH
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIP---IP-QYP-------LYSASLAEFNMEQIGYYLDESKQWGLPISELE  147 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~---~p-~y~-------~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~  147 (509)
                      +.+-+|+-.+..++..++...-+  =..+++.   .+ +|.       .....++..|..++.......  ..-..+.|.
T Consensus         4 ~aL~SGGKDS~~Al~~a~~~G~e--V~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~   79 (223)
T COG2102           4 IALYSGGKDSFYALYLALEEGHE--VVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK   79 (223)
T ss_pred             EEEEecCcHHHHHHHHHHHcCCe--eEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence            67788999998777777754221  0011221   11 122       223456778999888876642  123578888


Q ss_pred             HHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCC
Q psy13922        148 RSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS  227 (509)
Q Consensus       148 ~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (509)
                      +++++.    +..+|+       +|.+++..+..++-++|++-|+-++.     .+.-      .+...+..++-..  +
T Consensus        80 ~~l~~l----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~~-----PLWg------~d~~ell~e~~~~--G  135 (223)
T COG2102          80 EALRRL----KVDGIV-------AGAIASEYQKERVERLCEELGLKVYA-----PLWG------RDPEELLEEMVEA--G  135 (223)
T ss_pred             HHHHhC----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEEee-----cccC------CCHHHHHHHHHHc--C
Confidence            888875    566776       79999999999999999999988654     2221      1122222222111  3


Q ss_pred             ceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        228 MELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       228 ~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .+++++ +.||.  |++.-=+|.-+    +.++++.+..+..
T Consensus       136 f~~~Iv-~Vsa~--gL~~~~lGr~i----~~~~~e~l~~l~~  170 (223)
T COG2102         136 FEAIIV-AVSAE--GLDESWLGRRI----DREFLEELKSLNR  170 (223)
T ss_pred             CeEEEE-EEecc--CCChHHhCCcc----CHHHHHHHHHHHH
Confidence            457766 65665  55543355553    7888888887644

>KOG1201|consensus

Probab=83.43  E-value=39  Score=33.44  Aligned_cols=141  Identities=18%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             CCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChh---HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHH
Q psy13922         74 ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPL---YSASLAEFNMEQIGYYLDESKQWGLPISELERSI  150 (509)
Q Consensus        74 ~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i  150 (509)
                      +..+-|++|.||...=..+..-+.+.|.    ++++-+-+-.+   +...++..| ++..+..|=.     |.+++.+..
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~----~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-----~~eei~~~a  105 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA----KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-----DREEIYRLA  105 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC----eEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-----CHHHHHHHH
Confidence            4556789999998888888888888775    66554433233   344444445 5666655533     445555444


Q ss_pred             HhhhccCCceEEEEeCCCCCCC---CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCC
Q psy13922        151 TEARKHCNPRAIVIINPGNPTG---QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS  227 (509)
Q Consensus       151 ~~~~~~~~~~~ivi~~p~NPtG---~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (509)
                      ++..++-..-=|++||..=.++   .-.+++++++..++=-           .+        .+.....+.|.+-.. ++
T Consensus       106 ~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~-----------~~--------~f~t~kaFLP~M~~~-~~  165 (300)
T KOG1201|consen  106 KKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNT-----------IA--------HFWTTKAFLPKMLEN-NN  165 (300)
T ss_pred             HHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhh-----------HH--------HHHHHHHHhHHHHhc-CC
Confidence            4333322333445565533333   4577788888776421           11        233344555655443 25


Q ss_pred             ceeEEEEecccccCCCCC
Q psy13922        228 MELASFMSCSKGYMGECG  245 (509)
Q Consensus       228 ~~vi~i~S~SK~~~G~~G  245 (509)
                      +++|.+.|..=.+ |.+|
T Consensus       166 GHIV~IaS~aG~~-g~~g  182 (300)
T KOG1201|consen  166 GHIVTIASVAGLF-GPAG  182 (300)
T ss_pred             ceEEEehhhhccc-CCcc
Confidence            6788887866666 5665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	509
3ihj_A	498	Human Alanine Aminotransferase 2 In Complex With Pl		1e-117
3tcm_A	500	Crystal Structure Of Alanine Aminotransferase From		6e-94
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		3e-17
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		8e-15
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		4e-14
1iax_A	428	Crystal Structure Of Acc Synthase Complexed With Pl		8e-12
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		1e-11
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		1e-11
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		9e-09
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		1e-08
2gb3_A	409	Crystal Structure Of Aspartate Aminotransferase (Tm		2e-08
3piu_A	410	High-Resolution Structure Of Native Malus Domestica		6e-08
1b8g_A	429	1-aminocyclopropane-1-carboxylate Synthase Length =		6e-08
1ynu_A	473	Crystal Structure Of Apple Acc Synthase In Complex		6e-08
1m7y_A	435	Crystal Structure Of Apple Acc Synthase In Complex		6e-08
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		5e-07
2x5d_A	412	Crystal Structure Of A Probable Aminotransferase Fr		9e-07
1b5o_A	385	Thermus Thermophilus Aspartate Aminotransferase Sin		1e-06
5bj3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		1e-06
1gck_A	385	Thermus Thermophilus Aspartate Aminotransferase Dou		1e-06
1gc3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		1e-06
1bjw_A	382	Aspartate Aminotransferase From Thermus Thermophilu		4e-06
1bkg_A	385	Aspartate Aminotransferase From Thermus Thermophilu		4e-06
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		6e-06
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		6e-06
3nra_A	407	Crystal Structure Of An Aspartate Aminotransferase		3e-05
2o0r_A	411	The Three-Dimensional Structure Of N-Succinyldiamin		4e-05
3fdb_A	377	Crystal Structure Of A Putative Plp-Dependent Beta-		7e-05
3b1c_A	392	Crystal Structure Of Betac-S Lyase From Streptococc		8e-05
3jtx_A	396	Crystal Structure Of Aminotransferase (np_283882.1)		1e-04
3ele_A	398	Crystal Structure Of Amino Transferase (rer07020700		3e-04
3f6t_A	533	Crystal Structure Of Aspartate Aminotransferase (E.		5e-04
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		5e-04
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		6e-04
3fdd_A	533	The Crystal Structure Of The Pseudomonas Dacunhae A		6e-04

>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498

Iteration: 1
 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/490 (45%), Positives = 288/490 (58%), Gaps = 91/490 (18%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ-PADWQDV 79
            D P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA YI+RRDG  PAD  ++
Sbjct: 97  LDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNI 156
Query: 80  ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQW 139
            L+ GASDGI ++LK+L+      + GV+IPIPQYPLYSA ++E +  Q+ YYLDE   W
Sbjct: 157 YLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCW 216
Query: 140 GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
            L ++EL R++ EA+ HC+P+ + IINPGNPTGQV +++ I+D+I FA  EKLFL ADEV
Sbjct: 217 ALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEV 276
Query: 200 YQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLRGGYSEVINLDP 258
           YQDNVY+   +F+SFKKVL EMG  Y S +ELASF S SKGYMGECG RGGY EVINL P
Sbjct: 277 YQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHP 336
Query: 259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC 318
            +K  L K +S  LCP V                                   GQ  MD 
Sbjct: 337 EIKGQLVKLLSVRLCPPV----------------------------------SGQAAMDI 362
Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMXX 378
           VVNPP  GE S+EQFSREK+SVL +L ++AK+  D FN + G+ CNP+QGA         
Sbjct: 363 VVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGA--------- 413
Query: 379 XXXXXXXXXXXXXCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAI 438
                            +YAF  +       +P                        +A+
Sbjct: 414 -----------------MYAFPRI------FIPA-----------------------KAV 427
Query: 439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR 498
             A+A    P + Y  + LE TGIC+VPG+GFGQ  GTYHFR TILP  EKLK +L+K +
Sbjct: 428 EAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVK 487
Query: 499 EFHEEFLAKY 508
           +FH  FL KY
Sbjct: 488 DFHINFLEKY 497

>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500

Iteration: 1
 Score =  341 bits (874), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 187/485 (38%), Positives = 262/485 (54%), Gaps = 93/485 (19%)
Query: 26  FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGA 85
           F  D   RA+ +L    G++ G+Y+ S GI  +R  +A  I+ RDG PA+  D+ L+ GA
Sbjct: 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGA 166
Query: 86  SDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISE 145
           S G+  +++LLI +   +K G+L+PIPQYPLYSAS+A      + YYL+ES  WGL  S+
Sbjct: 167 SPGVHLMMQLLIRN---EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSD 223
Query: 146 LERSITEAR-KHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
           +++ + +AR +  N RA+V+INPGNPTGQVL +EN  DI+KF   E L L ADEVYQ+N+
Sbjct: 224 VKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENI 283
Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML 264
           Y +  KF+SFKK++  +G   + + L S+ S SKGY GECG RGGY E+      V+  +
Sbjct: 284 YVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQI 343
Query: 265 HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ 324
           +K  S  LC  +                                   GQ +   V+NPP+
Sbjct: 344 YKIASVNLCSNI----------------------------------TGQILASLVMNPPK 369
Query: 325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMXXXXXXXX 384
             + SY  +  EK  +L SL +RAK +   FN +EG++CN  +GAMY FPQ         
Sbjct: 370 ASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQ--------- 420
Query: 385 XXXXXXXCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAE 444
                                 IC+                         Q+AI  AKA 
Sbjct: 421 ----------------------ICL------------------------PQKAIEAAKAA 434
Query: 445 GKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEF 504
            K P   YA   LE TGI +VPG+GFGQVPGT+HFR TILPQ +K+ A++ +F  FHE F
Sbjct: 435 NKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAF 494
Query: 505 LAKYK 509
           +++Y+
Sbjct: 495 MSEYR 499

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 149/380 (39%), Gaps = 77/380 (20%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
           Y DS G+  +R+ + +   R++G      DV ++A  ++ ++ +   L++  D     +L
Sbjct: 74  YGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDE----IL 129
Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG 168
           +P P YP Y+  +  +  + + Y   E + W   I ++ + IT+  K     AI +INP 
Sbjct: 130 VPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTK-----AIAVINPN 184
Query: 169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM 228
           NPTG +  K+ +++I+  A   ++ + +DE+Y    Y EG          +  G   K +
Sbjct: 185 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEH--------ISPGSLTKDV 235
Query: 229 ELASFMSCSKGYMGECGLRGGYSEVI---NLDPGVKAMLHKSISAMLCPTVLALVSLPQL 285
            +      SK Y    G R GY   +   N    V+  + +     LCP        P  
Sbjct: 236 PVIVMNGLSKVYFA-TGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNT------PAQ 288
Query: 286 FDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK 345
           F              A + G  G       MD +                  +  +  LK
Sbjct: 289 F--------------AAIAGLTGP------MDYL------------------KEYMKKLK 310
Query: 346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMXXXXXXXXXXXXXXXCPSVLYAFELLERT 405
           +R   +    N I G+S    QGA Y FP++                    +  ++L   
Sbjct: 311 ERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKE----------FVLDVLHNA 360
Query: 406 GICIVPGAGFGQVPGTYHFR 425
            +  V G+GFG+  G  HFR
Sbjct: 361 HVLFVHGSGFGEY-GAGHFR 379

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 34  AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
            QA+ D         Y  S G    R  VA Y    +  P + +DVIL++G S  I+  L
Sbjct: 54  TQAMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEA-PLEAKDVILTSGCSQAIELCL 112
Query: 94  KLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSIT 151
            +L        PG  +LIP P + LY        +E   Y L   K W + + +LE S+ 
Sbjct: 113 AVL------ANPGQNILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLE-SLI 165
Query: 152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE 207
           + +  C    +V+ NP NP G V +K ++Q I+  A R+ + + ADE+Y D V+++
Sbjct: 166 DEKTAC----LVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSD 217

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 34  AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
            QA+ D         Y  S G    R  +A Y    +  P + +DVIL++G S  I   L
Sbjct: 77  TQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEA-PLEAKDVILTSGCSQAIDLCL 135
Query: 94  KLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSIT 151
            +L        PG  +L+P P + LY        +E   Y L   K W + + +LE  I 
Sbjct: 136 AVL------ANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLID 189
Query: 152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE 207
           E +  C    +++ NP NP G V +K ++Q I+  A R+ + + ADE+Y D V+++
Sbjct: 190 E-KTAC----LIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSD 240

>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 104/218 (47%), Gaps = 9/218 (4%)
Query: 44  QSVGSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLLIEDVD 101
           +++ ++ D  G+   R+ +A+++ +  G     D + V+++ GA+   ++++  L +  D
Sbjct: 74  KAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD 133
Query: 102 GKKPGVLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNP 159
                 L+P P YP ++  L     ++ I  + + S  + +    ++ +   A+K +   
Sbjct: 134 A----FLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKV 189
Query: 160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLV 219
           + +++ NP NP G  L K+ ++ ++ F ++  + L  DE+Y   V+ +  +F S  ++L 
Sbjct: 190 KGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILD 248
Query: 220 EMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD 257
           E    Y + +L   +      MG  G R G     N D
Sbjct: 249 EQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDD 286

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 107/199 (53%), Gaps = 25/199 (12%)
Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV 79
           +P F  P  +K+ A+  LD    + +  Y  + G+  +R  +A+ + +++G  AD + ++
Sbjct: 34  EPDFDTPQHIKEYAKEALD----KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEI 89
Query: 80  ILSAGASD----GIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
           ++  GA+     G+ + LK      DG++  VLIP P +  Y+ ++     + +     E
Sbjct: 90  MVLLGANQAFLMGLSAFLK------DGEE--VLIPTPAFVSYAPAVILAGGKPVEVPTYE 141
Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
             ++ L + EL++ +T+       RA++I +P NPTG VLTK+++++I  F     L + 
Sbjct: 142 EDEFRLNVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVI 196
Query: 196 ADEVYQDNVYAEGSKFYSF 214
           +DEVY+  +Y + ++ YS 
Sbjct: 197 SDEVYEHFIY-DDARHYSI 214

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 107/199 (53%), Gaps = 25/199 (12%)
Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV 79
           +P F  P  +K+ A+  LD    + +  Y  + G+  +R  +A+ + +++G  AD + ++
Sbjct: 35  EPDFDTPQHIKEYAKEALD----KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEI 90
Query: 80  ILSAGASD----GIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
           ++  GA+     G+ + LK      DG++  VLIP P +  Y+ ++     + +     E
Sbjct: 91  MVLLGANQAFLMGLSAFLK------DGEE--VLIPTPAFVSYAPAVILAGGKPVEVPTYE 142
Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
             ++ L + EL++ +T+       RA++I +P NPTG VLTK+++++I  F     L + 
Sbjct: 143 EDEFRLNVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVI 197
Query: 196 ADEVYQDNVYAEGSKFYSF 214
           +DEVY+  +Y + ++ YS 
Sbjct: 198 SDEVYEHFIY-DDARHYSI 215

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 77  QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES 136
            +V+L +G S GI   +  + +  D      L+P P +P Y      + +    Y     
Sbjct: 105 DNVVLCSGGSHGILMAITAICDAGDY----ALVPQPGFPHYETVCKAYGIGMHFYNCRPE 160
Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
             W   + E+ R      K    + +++ NP NP G   ++++++DI++ A   +L LF+
Sbjct: 161 NDWEADLDEIRR-----LKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 215
Query: 197 DEVYQDNVYAEGSKFYSFKKV 217
           DE+Y   V+       +F  V
Sbjct: 216 DEIYAGMVFKGKDPNATFTSV 236

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 153/377 (40%), Gaps = 96/377 (25%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADW--QDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           YTDS GI  +R  +++    +D   AD    ++I++ G+S G+   L  +I+D D     
Sbjct: 62  YTDSRGILELREKISEL--YKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDE---- 115
Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN 166
           VLI  P YP Y   +     + +  + D        +  LE ++++  K     AI+I +
Sbjct: 116 VLIQNPCYPCYKNFIRFLGAKPV--FCD------FTVESLEEALSDKTK-----AIIINS 162
Query: 167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYK 226
           P NP G+V+ +E    I +FA+    ++ +DE+Y   VY EG K YS     +E  E   
Sbjct: 163 PSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVY-EG-KCYS----AIEFDE--- 209
Query: 227 SMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAML-CPTVLALVSLPQL 285
           ++E    ++         G R GY  VI+ D  ++A+L    +  +  PT+    +L   
Sbjct: 210 NLEKTILINGFSXLYAMTGWRIGY--VISNDEIIEAILKLQQNLFISAPTISQYAALKA- 266
Query: 286 FDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK 345
                F  + ++   +++                           ++F R ++ VL    
Sbjct: 267 -----FEKETEREINSMI---------------------------KEFDRRRRLVL---- 290
Query: 346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMXXXXXXXXXXXXXXXCPSVLYAFELLERT 405
              K V D      G   N   GA Y FP +                    +A++LL+  
Sbjct: 291 ---KYVKDF-----GWEVNNPIGAYYVFPNIGEDGRE--------------FAYKLLKEK 328
Query: 406 GICIVPGAGFGQVPGTY 422
            + + PG GFG     Y
Sbjct: 329 FVALTPGIGFGSKGKNY 345

>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-- 106
           Y+ S GI  +R   A Y  RR       ++V+++ G S+ I     ++        PG  
Sbjct: 75  YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI------ANPGDE 128
Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN 166
           +L+  P Y  Y+A      ++ I       + + +P   LE  I E  K      IV+ N
Sbjct: 129 ILVLEPFYANYNAFAKIAGVKLIPVTRRXEEGFAIP-QNLESFINERTK-----GIVLSN 182
Query: 167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
           P NPTG V  K+  + +++ A R  LFL  DEVY + V+
Sbjct: 183 PCNPTGVVYGKDEXRYLVEIAERHGLFLIVDEVYSEIVF 221

>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G+   ++ +  +++   G     D   ++L+AGA+   ++ +  L +      PG
Sbjct: 80  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD------PG 133
Query: 107 --VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNPRAI 162
             VLIP P YP +   L     +E +  +   S  + +  + LE +  EA K +   + +
Sbjct: 134 EAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGV 193
Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
           ++ NP NP G  +T+  +  ++ F   + + L +DE+Y    ++  S F S  +VL
Sbjct: 194 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS-FISVMEVL 248

>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G+   ++ +  +++   G     D   ++L+AGA+   ++ +  L +      PG
Sbjct: 82  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD------PG 135
Query: 107 --VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNPRAI 162
             VLIP P YP +   L     +E +  +   S  + +  + LE +  EA K +   + +
Sbjct: 136 EAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGV 195
Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
           ++ NP NP G  +T+  +  ++ F   + + L +DE+Y    ++  S F S  +VL
Sbjct: 196 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS-FISVMEVL 250

>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G+   ++ +  +++   G     D   ++L+AGA+   ++ +  L +      PG
Sbjct: 82  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD------PG 135
Query: 107 --VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARK-HCNPRAI 162
             VLIP P YP +   L     +E +  +   S  + +  + LE +  EA K +   + +
Sbjct: 136 EAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGV 195
Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
           ++ NP NP G  +T+  +  ++ F   + + L +DE+Y    ++  S F S  +VL
Sbjct: 196 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS-FISVMEVL 250

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 32/168 (19%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
           Y    G+  +R  +A+  +       + + V++++GA++ +  +L+ L+    G    V+
Sbjct: 57  YAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLV----GPGDEVV 106
Query: 109 IPIPQYPLY---------SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNP 159
           +  P + +Y          A L   ++   G+ LD        +S LE+++T        
Sbjct: 107 VLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLD--------LSALEKALT-----PRT 153
Query: 160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE 207
           RA+++  P NPTG V  +  ++ I + A    LFL +DEVY +  Y E
Sbjct: 154 RALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE 201

>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 49  YTDSPGIEIIRRHVAQ-YISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGV 107
           Y+ S GI  +RR ++  Y  R D Q     + I++ G+ +G+  ++   ++  D     +
Sbjct: 71  YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDT----I 126
Query: 108 LIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLP----ISELERSITEARKHCNPRA 161
           L+P P YP+  Y A +A   +  +           +P     +ELER+I E+     PR 
Sbjct: 127 LVPNPSYPIHIYGAVIAGAQVRSVPL---------VPGIDFFNELERAIRESIP--KPRM 175
Query: 162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEM 221
           +++  P NPT Q +  +  + ++  A +  + +  D  Y D VY +G K  S  +V    
Sbjct: 176 MILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY-DGWKAPSIMQV---- 230
Query: 222 GEPYKSMELASFMSCSKGYMGECGLRGGY 250
             P        F + SK Y    G R G+
Sbjct: 231 --PGAKDIAVEFFTLSKSY-NMAGWRIGF 256

>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           FD P    +  +RA A       Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 43  FDTPEHVKEAARRALA-------QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95
Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G S  + ++ + +++   G +  VL P      Y  S  E      G  ++      
Sbjct: 96  VTVGGSQALFNLFQAILDP--GDEVIVLSP------YWVSYPEMVRFAGGVVVEVET--- 144
Query: 141 LPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           LP           R+   PR  A+V+ +P NPTG V  KE ++ + + A     +L +DE
Sbjct: 145 LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204
Query: 199 VYQDNVYAEGSKF 211
           +Y+  +Y EG  F
Sbjct: 205 IYEHLLY-EGEHF 216

>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           FD P    +  +RA A       Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 43  FDTPEHVKEAARRALA-------QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95
Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G S  + ++ + +++   G +  VL P      Y  S  E      G  ++      
Sbjct: 96  VTVGGSQALFNLFQAILDP--GDEVIVLSP------YWVSYPEMVRFAGGVVVEVET--- 144
Query: 141 LPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           LP           R+   PR  A+V+ +P NPTG V  KE ++ + + A     +L +DE
Sbjct: 145 LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204
Query: 199 VYQDNVYAEGSKF 211
           +Y+  +Y EG  F
Sbjct: 205 IYEHLLY-EGEHF 216

>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           FD P    +  +RA A       Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 43  FDTPEHVKEAARRALA-------QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95
Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G S  + ++ + +++   G +  VL P      Y  S  E      G  ++      
Sbjct: 96  VTVGGSQALFNLFQAILDP--GDEVIVLSP------YWVSYPEMVRFAGGVVVEVET--- 144
Query: 141 LPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           LP           R+   PR  A+V+ +P NPTG V  KE ++ + + A     +L +DE
Sbjct: 145 LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204
Query: 199 VYQDNVYAEGSKF 211
           +Y+  +Y EG  F
Sbjct: 205 IYEHLLY-EGEHF 216

>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           FD P    +  +RA A       Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 43  FDTPEHVKEAARRALA-------QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95
Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G S  + ++ + +++   G +  VL P      Y  S  E      G  ++      
Sbjct: 96  VTVGGSQALFNLFQAILDP--GDEVIVLSP------YWVSYPEMVRFAGGVVVEVET--- 144
Query: 141 LPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           LP           R+   PR  A+V+ +P NPTG V  KE ++ + + A     +L +DE
Sbjct: 145 LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204
Query: 199 VYQDNVYAEGSKF 211
           +Y+  +Y EG  F
Sbjct: 205 IYEHLLY-EGEHF 216

>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 21/193 (10%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           FD P    +  +RA A       Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 43  FDTPEHVKEAARRALA-------QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95
Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G    + ++ + +++   G +  VL P      Y  S  E      G  ++      
Sbjct: 96  VTVGGKQALFNLFQAILDP--GDEVIVLSP------YWVSYPEMVRFAGGVVVEVET--- 144
Query: 141 LPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           LP           R+   PR  A+V+ +P NPTG V  KE ++ + + A     +L +DE
Sbjct: 145 LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204
Query: 199 VYQDNVYAEGSKF 211
           +Y+  +Y EG  F
Sbjct: 205 IYEHLLY-EGEHF 216

>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 21/193 (10%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           FD P    +  +RA A       Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 43  FDTPEHVKEAARRALA-------QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95
Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G    + ++ + +++   G +  VL P      Y  S  E      G  ++      
Sbjct: 96  VTVGGKQALFNLFQAILDP--GDEVIVLSP------YWVSYPEMVRFAGGVVVEVET--- 144
Query: 141 LPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           LP           R+   PR  A+V+ +P NPTG V  KE ++ + + A     +L +DE
Sbjct: 145 LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE 204
Query: 199 VYQDNVYAEGSKF 211
           +Y+  +Y EG  F
Sbjct: 205 IYEHLLY-EGEHF 216

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
           YTD  GI  +R  +A+ I  R  +      V+++ GA   + +    L++   G +  V 
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDP--GDEVIVF 131
Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG 168
            P+    +    LA   +  +  ++  SK +   + E+E  +         +A++I +P 
Sbjct: 132 SPVWVSYIPQIILAGGTVNVVETFM--SKNFQPSLEEVEGLLV-----GKTKAVLINSPN 184
Query: 169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE 207
           NPTG V  +E ++ +++ A +   ++ +DEVY   VY +
Sbjct: 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD 223

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
           D   P  + + A+A L+    Q    Y  + G   +R  +AQ + R +G      +++++
Sbjct: 41  DFNTPKHIVEAAKAALE----QGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVT 96
Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
            G    I +++  +IE  D     V+IP P +  Y   +       +        Q+ + 
Sbjct: 97  NGGKQSIFNLMLAMIEPGDE----VIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVS 152
Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
             ++ ++IT   K      +V   P NPTG V T + ++ I + A    L++ +DE+Y+ 
Sbjct: 153 PEQIRQAITPKTK-----LLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK 207
Query: 203 NVY 205
            +Y
Sbjct: 208 ILY 210

>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 40  GCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED 99
           G +   V +YT+  G   IR  +A  ++   G P D +D ++    + G +  L L +  
Sbjct: 65  GVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLI---ITPGTQGALFLAVAA 121
Query: 100 VDGKKPGVLIPIPQYPLYSASLAEFNME----QIGYYLDESKQWGLPISELERSITEARK 155
              +   V I  P Y      +  F  E    Q+ Y   +  + GL ++ LE +      
Sbjct: 122 TVARGDKVAIVQPDYFANRKLVEFFEGEXVPVQLDYVSADETRAGLDLTGLEEAF----- 176
Query: 156 HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS 209
               R  +  NP NP G V + E I  I   A R    + AD++Y    YA  S
Sbjct: 177 KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS 230

>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 78  DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL-D 134
           +V+++ GA++ I + +  L+E      PG  VL+  P Y  YS  +A     ++   L  
Sbjct: 88  EVLVTVGATEAIAAAVLGLVE------PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVP 141
Query: 135 ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL 194
           + + + L    L R++T        RA++I +P NPTG VL+   +  I + A    L +
Sbjct: 142 DGRGFALDADALRRAVTP-----RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVV 196
Query: 195 FADEVYQDNVY 205
             DEVY+  V+
Sbjct: 197 ITDEVYEHLVF 207

>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 35  QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
           QA+ D  + ++ G   D     ++ +  A++ + R G  A  + +         I  V++
Sbjct: 43  QAITDAVQREAFGYQPDG---SLLSQATAEFYADRYGYQARPEWIF-------PIPDVVR 92
Query: 95  LLIEDVDGKKPG---VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSIT 151
            L   +D   P    V++P P YP +   L+    E  G ++D +   G+ + ++E+   
Sbjct: 93  GLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQRE--GIFIDATG--GINLHDVEKGF- 147
Query: 152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
                   R+I++ NP NP G V   E + ++   AHR    +  DE++   V+
Sbjct: 148 ----QAGARSILLCNPYNPLGXVFAPEWLNELCDLAHRYDARVLVDEIHAPLVF 197

>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 87  DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL-DESKQWGLPISE 145
           +G+   + + I+    +   VLI  P YP ++ S+   N + +   L +E+  + +   +
Sbjct: 96  EGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQ 155
Query: 146 LERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
           LE  I E     + +  ++ NP NP G+V  +E ++ I     +  + L +DE++QD + 
Sbjct: 156 LENDIVEN----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQD-LT 210
Query: 206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN 255
             G +  SF  V  +        + A  +S +       G +  Y+ + N
Sbjct: 211 LFGHEHVSFNTVSPDFK------DFALVLSSATKTFNIAGTKNSYAIIEN 254

>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 19/208 (9%)
Query: 49  YTDSPGIEIIRRHVAQYISRR-DGQPADWQDVILSA-GASDGIKSVLKLLIEDV-DGKKP 105
           Y  + G+  +R+  A ++ RR DG   D  + IL   G+ + + S ++ ++  V DG KP
Sbjct: 62  YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121
Query: 106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELE---RSITEARKHCNPRAI 162
            ++ P P Y +Y  +       +I +          P        RSI+E       + +
Sbjct: 122 AIVSPNPFYQIYEGATL-LGGGEIHFA-------NCPAPSFNPDWRSISE-EVWKRTKLV 172
Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG 222
            + +P NP+G VL  +  +++     +    + +DE Y + +Y +G+K     +   ++G
Sbjct: 173 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNKPLGCLQAAAQLG 231
Query: 223 EPYKSMELASFMSCSKGYMGECGLRGGY 250
                 +L  F S S       GLR G+
Sbjct: 232 R--SRQKLLXFTSLSX-RSNVPGLRSGF 256

>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/163 (19%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
           YT + G    R  +A++++   G   +  ++  + GA+  +    + L  D   +   + 
Sbjct: 72  YTSAQGDVETRAAIAEFLNNTHGTHFNADNLYXTXGAAASLSICFRALTSDAYDEFITIA 131
Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG 168
              P+Y ++  +     +E       +++ + +    LE  I     + + R ++I +P 
Sbjct: 132 PYFPEYKVFVNAAGARLVEVPA----DTEHFQIDFDALEERI-----NAHTRGVIINSPN 182
Query: 169 NPTGQVLTKENIQDIIKFAHREK------LFLFADEVYQDNVY 205
           NP+G V ++E I+ +     ++       +F+ ADE Y++ VY
Sbjct: 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY 225

>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 24/230 (10%)
Query: 54  GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED---VDGKKPGVLIP 110
             E I  +  Q +S +D   A+  D+  + G +  I      L E+     G K  +  P
Sbjct: 142 NTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEP 201
Query: 111 IPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP 170
           I    L    L ++ + ++  +  E   W +  +E+E+      K  + +A++++NP NP
Sbjct: 202 IFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEK-----LKDPSIKALIVVNPTNP 256
Query: 171 TGQVLTKENIQDIIKFAHRE-KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME 229
           T +      +  I +   +  KL + +DEVY       G+   +FK +   +  PY +  
Sbjct: 257 TSKEFDTNALNAIKQAVEKNPKLXIISDEVY-------GAFVPNFKSIYSVV--PYNTXL 307
Query: 230 LASF---MSCSKGYMGECGLRGGY---SEVINLDPGVKAMLHKSISAMLC 273
           + S+     C+   +G   L         + +LD      LHK  S+++ 
Sbjct: 308 VYSYSXLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVL 357

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 18/182 (9%)
Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDG-QPADWQDV 79
           FD PR+        Q  L     Q    Y    G++ +R  +AQ   R  G QP    D+
Sbjct: 42  FDGPRY-------LQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDI 94
Query: 80  ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQW 139
            ++AGA++ + + +  L+ + D     V+   P Y  Y+ ++A  +   +     +   +
Sbjct: 95  TVTAGATEALYAAITALVRNGDE----VICFDPSYDSYAPAIA-LSGGIVKRMALQPPHF 149
Query: 140 GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
            +   E    ++E       R +++  P NP+  V  + +   + +     ++F+ +DEV
Sbjct: 150 RVDWQEFAALLSE-----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEV 204
Query: 200 YQ 201
           Y+
Sbjct: 205 YE 206

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 77  QDVILSAGASDGIKSVLKLLI---EDVDGKKPGVLIPIPQYPLYSASLAEFNM---EQIG 130
           ++V ++ GA++GI S L  L+   ++V   +P     IP   L    +    +   +++ 
Sbjct: 119 ENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELD 178
Query: 131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE 190
                 ++W +   + E++IT   K     A++I  P NP G+V T+E +  +     + 
Sbjct: 179 QRNTRGEEWTIDFEQFEKAITSKTK-----AVIINTPHNPIGKVFTREELTTLGNICVKH 233
Query: 191 KLFLFADEVYQ 201
            + + +DEVY+
Sbjct: 234 NVVIISDEVYE 244

>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme Length = 533

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 153/394 (38%), Gaps = 76/394 (19%)
Query: 55  IEIIRRHVAQYISRR---DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK-KPG--VL 108
           + I  + V QYI R    D  P++  ++    G +  +  + + +   V+G  K G  V 
Sbjct: 141 LNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESM--KVNGLLKAGDKVA 198
Query: 109 IPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN 166
           I +P +  Y     LA++ +E++    D +  W  P SEL++      K    +    +N
Sbjct: 199 IGMPVFTPYIEIPELAQYALEEVAINADPALNWQYPDSELDK-----LKDPAIKIFFCVN 253
Query: 167 PGNPTGQVLTKENIQDIIKFA--HREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEP 224
           P NP    + + +++ + K    HR  L +  D+VY    +A+G  F S   +      P
Sbjct: 254 PSNPPSVKMDERSLERVRKIVAEHRPDLMILTDDVY--GTFADG--FQSLFAIC-----P 304
Query: 225 YKSMELASFMSCSKGYMGECGLRGG----YSEVINLDPGVKAMLHKSISAM------LCP 274
             ++ + SF      Y G  G R G    + E I  D  +  +     +A+      L P
Sbjct: 305 ANTLLVYSF----SKYFGATGWRLGVVAAHKENI-FDLALGRLPESEKTALDDRYRSLLP 359
Query: 275 TVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV------MDCVVNPPQPGEP 328
            V +L  L +L  D R            L+   G S  Q V      +  +++     + 
Sbjct: 360 DVRSLKFLDRLVADSR---------AVALNHTAGLSTPQQVQMTLFSLFALMDESDQYKH 410
Query: 329 SYEQFSREKQSV----LDSLKQRAKMVADTFNSIEGMSCNPVQGAMY--AFPQMXXXXXX 382
           + +Q  R +++     L +  QR +   D +  I+      V   +Y  AF +       
Sbjct: 411 TLKQLIRRREATLYRELGTPPQRDENAVDYYTLID---LQDVTSKLYGEAFSKWAVKQSS 467
Query: 383 XXXXXXXXXCPSVLYAFELLERTGICIVPGAGFG 416
                           F + + TGI ++PG GFG
Sbjct: 468 TGDML-----------FRIADETGIVLLPGRGFG 490

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	509
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	1e-178
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	1e-175
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	6e-54
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	1e-52
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	2e-48
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	2e-35
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	3e-34
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	7e-34
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	2e-33
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	6e-32
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	7e-32
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	3e-31
3nra_A	407	Aspartate aminotransferase; structural genomics, j	2e-30
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	6e-30
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	7e-28
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	2e-27
3ele_A	398	Amino transferase; RER070207001803, structural gen	2e-25
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	5e-24
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	8e-24
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	9e-24
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	1e-23
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	1e-22
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	3e-22
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	7e-04
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	3e-22
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	1e-21
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	3e-21
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	5e-21
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	1e-20
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	1e-20
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	1e-19
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	5e-19
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	3e-18
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	4e-18
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	1e-06
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	5e-18
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	3e-17
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	4e-17
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	8e-04
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	1e-16
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	1e-16
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	4e-16
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	9e-06
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	2e-15
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	3e-14
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	2e-13
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	3e-13
1vp4_A	425	Aminotransferase, putative; structural genomics, j	3e-12
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	5e-12
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	8e-12
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	8e-10
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	1e-09
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	7e-08
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	9e-08
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	1e-07
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	2e-07
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	2e-07
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	3e-07
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	4e-07
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	5e-07
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	5e-07
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	1e-06
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	1e-06
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	6e-06
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	3e-05
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	4e-05
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	5e-05
3rq1_A	418	Aminotransferase class I and II; structural genomi	2e-04
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	2e-04

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score =  509 bits (1313), Expect = e-178
 Identities = 232/501 (46%), Positives = 295/501 (58%), Gaps = 91/501 (18%)

Query: 10  QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
           QV+AL + P L D P FP+D K+RA+ +L  C G S+GSY+ S G+  IR  VA YI+RR
Sbjct: 86  QVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRR 145

Query: 70  DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
           DG  PAD  ++ L+ GASDGI ++LK+L+      + GV+IPIPQYPLYSA ++E +  Q
Sbjct: 146 DGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQ 205

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
           + YYLDE   W L ++EL R++ EA+ HC+P+ + IINPGNPTGQV +++ I+D+I FA 
Sbjct: 206 VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAW 265

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
            EKLFL ADEVYQDNVY+   +F+SFKKVL EMG  Y S +ELASF S SKGYMGECG R
Sbjct: 266 EEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYR 325

Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           GGY EVINL P +K  L K +S  LCP V                               
Sbjct: 326 GGYMEVINLHPEIKGQLVKLLSVRLCPPVS------------------------------ 355

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
               GQ  MD VVNPP  GE S+EQFSREK+SVL +L ++AK+  D FN + G+ CNP+Q
Sbjct: 356 ----GQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQ 411

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           GAMYAF                   P +                                
Sbjct: 412 GAMYAF-------------------PRI-------------------------------- 420

Query: 428 VWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQP 487
                   +A+  A+A    P + Y  + LE TGIC+VPG+GFGQ  GTYHFR TILP  
Sbjct: 421 ----FIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPV 476

Query: 488 EKLKAMLEKFREFHEEFLAKY 508
           EKLK +L+K ++FH  FL KY
Sbjct: 477 EKLKTVLQKVKDFHINFLEKY 497

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score =  501 bits (1292), Expect = e-175
 Identities = 190/505 (37%), Positives = 265/505 (52%), Gaps = 97/505 (19%)

Query: 10  QVLALVSLPQLFDDP----RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
           +VLAL   P L         F  D   RA+ +L    G++ G+Y+ S GI  +R  +A  
Sbjct: 87  EVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASG 146

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
           I+ RDG PA+  D+ L+ GAS G+  +++LLI +   +K G+L+PIPQYPLYSAS+A   
Sbjct: 147 IASRDGFPANADDIFLTDGASPGVHLMMQLLIRN---EKDGILVPIPQYPLYSASIALHG 203

Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDII 184
              + YYL+ES  WGL  S++++ + +AR    N RA+V+INPGNPTGQVL +EN  DI+
Sbjct: 204 GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV 263

Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC 244
           KF   E L L ADEVYQ+N+Y +  KF+SFKK++  +G   + + L S+ S SKGY GEC
Sbjct: 264 KFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC 323

Query: 245 GLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLD 304
           G RGGY E+      V+  ++K  S  LC  +                            
Sbjct: 324 GKRGGYFEITGFSAPVREQIYKIASVNLCSNIT--------------------------- 356

Query: 305 GCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
                  GQ +   V+NPP+  + SY  +  EK  +L SL +RAK +   FN +EG++CN
Sbjct: 357 -------GQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN 409

Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
             +GAMY F                   P +                             
Sbjct: 410 EAEGAMYVF-------------------PQI----------------------------- 421

Query: 425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL 484
                     Q+AI  AKA  K P   YA   LE TGI +VPG+GFGQVPGT+HFR TIL
Sbjct: 422 -------CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL 474

Query: 485 PQPEKLKAMLEKFREFHEEFLAKYK 509
           PQ +K+ A++ +F  FHE F+++Y+
Sbjct: 475 PQEDKIPAVISRFTVFHEAFMSEYR 499

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  186 bits (475), Expect = 6e-54
 Identities = 88/416 (21%), Positives = 144/416 (34%), Gaps = 87/416 (20%)

Query: 18  PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ 77
           P +F +     +V Q  +  LD   G+  G Y  S G    R  +A Y       P + +
Sbjct: 64  PTVFGNLPTDPEVTQAMKDALD--SGKYNG-YAPSIGFLSSREEIASY-YHCPEAPLEAK 119

Query: 78  DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
           DVIL++G S  I   L +L        PG  +L+P P + LY        +E   Y L  
Sbjct: 120 DVILTSGCSQAIDLCLAVLAN------PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLP 173

Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
            K W + + +LE  I E         +++ NP NP G V +K ++Q I+  A R+ + + 
Sbjct: 174 EKSWEIDLKQLEYLIDE-----KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPIL 228

Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY----S 251
           ADE+Y D V+    K+         +      + + S    +K ++   G R G+     
Sbjct: 229 ADEIYGDMVF-SDCKYEP-------LATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHD 279

Query: 252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQS 310
                   ++  L K    +L P  +                   Q A +++L       
Sbjct: 280 RRDIFGNEIRDGLVKLSQRILGPCTIV------------------QGALKSILCR----- 316

Query: 311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAM 370
              T  +   N                   L  LK  A +      +I G+      GAM
Sbjct: 317 ---TPGEFYHNT------------------LSFLKSNADLCYGALAAIPGLRPVRPSGAM 355

Query: 371 YAFPQMKLPA-KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           Y    +++                 V +   L+    +  +P   F   P     R
Sbjct: 356 YLMVGIEMEHFPEFEN--------DVEFTERLVAEQSVHCLPATCFE-YPN--FIR 400

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  182 bits (465), Expect = 1e-52
 Identities = 68/417 (16%), Positives = 131/417 (31%), Gaps = 85/417 (20%)

Query: 23  DPRFPDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD------ 75
                        + + +    Q    Y  + G    R  VA +         +      
Sbjct: 44  TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV 103

Query: 76  WQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
             +V+L +G S GI   +  + +       G   L+P P +P Y      + +    Y  
Sbjct: 104 KDNVVLCSGGSHGILMAITAICD------AGDYALVPQPGFPHYETVCKAYGIGMHFYNC 157

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
                W   + E+ R   +       + +++ NP NP G   ++++++DI++ A   +L 
Sbjct: 158 RPENDWEADLDEIRRLKDD-----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 212

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
           LF+DE+Y   V+       +F      + +   ++        +K   +   G R G+  
Sbjct: 213 LFSDEIYAGMVFKGKDPNATF----TSVADFETTVPRVILGGTAKNLVV--PGWRLGWLL 266

Query: 251 -SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRG 308
             +     P     L +    +  P  +                   Q A    L     
Sbjct: 267 YVDPHGNGPSFLEGLKRVGMLVCGPCTVV------------------QAALGEALLNTPQ 308

Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG 368
           + + Q V                            +++ A  + +      G++    +G
Sbjct: 309 EHLDQIV--------------------------AKIEESAMYLYNHIGECIGLAPTMPRG 342

Query: 369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           AMY   +       I   K       V +  +LLE   + ++PG  F   PG    R
Sbjct: 343 AMYLMSR-------IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-APG--FTR 389

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score =  171 bits (436), Expect = 2e-48
 Identities = 93/419 (22%), Positives = 159/419 (37%), Gaps = 98/419 (23%)

Query: 18  PQLFDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD 75
           P  FD   F  P+ +K+     +    G     Y DS G+  +R+ + +   R++G    
Sbjct: 48  PVKFD---FQPPEHMKEAYCKAIK--EGH--NYYGDSEGLPELRKAIVEREKRKNGVDIT 100

Query: 76  WQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
             DV ++A  ++ ++ +   L++      PG  +L+P P YP Y+  +  +  + + Y  
Sbjct: 101 PDDVRVTAAVTEALQLIFGALLD------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRT 154

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
            E + W   I ++ + IT+       +AI +INP NPTG +  K+ +++I+  A   ++ 
Sbjct: 155 IEEEDWQPDIDDIRKKITD-----RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIP 209

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMEL--ASFMSCSKGY-MGECGLRGGY 250
           + +DE+Y    Y    +  S   +         + ++        SK Y     G R GY
Sbjct: 210 VISDEIYDLMTY--EGEHISPGSL---------TKDVPVIVMNGLSKVYFA--TGWRLGY 256

Query: 251 ---SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGC 306
               +  N    V+  + +     LCP   A                  Q A  A L G 
Sbjct: 257 MYFVDPENKLSEVREAIDRLARIRLCPNTPA------------------QFAAIAGLTGP 298

Query: 307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV 366
                    MD +                     +  LK+R   +    N I G+S    
Sbjct: 299 ---------MDYLKEY------------------MKKLKERRDYIYKRLNEIPGISTTKP 331

Query: 367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           QGA Y FP          K +         +  ++L    +  V G+GFG+  G  HFR
Sbjct: 332 QGAFYIFP----------KIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFR 379

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score =  136 bits (344), Expect = 2e-35
 Identities = 68/385 (17%), Positives = 149/385 (38%), Gaps = 69/385 (17%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQPADWQ--DVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G+   R+ +A+++ +  G    +    V+++ GA+   ++++  L +      PG
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD------PG 132

Query: 107 --VLIPIPQYPLYSASLAEFN-MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAI 162
              L+P P YP ++  L     ++ I  + + S  + +    ++ +   A+K     + +
Sbjct: 133 DAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192

Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG 222
           ++ NP NP G  L K+ ++ ++ F ++  + L  DE+Y   V+ +  +F S  ++L E  
Sbjct: 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQE 251

Query: 223 EPYKSMELASFM-SCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVS 281
             Y + +L   + S SK   G  G R G     N D  V      S   ++       ++
Sbjct: 252 MTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFN-DDVVNCARKMSSFGLVSTQTQYFLA 309

Query: 282 LPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL 341
              +  D +F D+                                   + + S  +    
Sbjct: 310 --AMLSDEKFVDN-----------------------------------FLRESAMR---- 328

Query: 342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL 401
             L +R K   +    + G+ C      ++ +  ++     + ++  +     +     +
Sbjct: 329 --LGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLR---PLLRESTFDS---EMSLWRVI 379

Query: 402 LERTGICIVPGAGFG-QVPGTYHFR 425
           +    + + PG+ F  Q PG   FR
Sbjct: 380 INDVKLNVSPGSSFECQEPG--WFR 402

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score =  131 bits (333), Expect = 3e-34
 Identities = 68/418 (16%), Positives = 133/418 (31%), Gaps = 111/418 (26%)

Query: 16  SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD 75
           +L +LF          +     L     +   +Y    G    ++ V+Q  +       +
Sbjct: 33  TLEELFA---LSGTNPEDFYKKLQ--GTKL--NYGWIEGSPAFKKSVSQLYTGVK---PE 82

Query: 76  WQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
              ++ + GA+     VL  LIE      PG  V+   P Y            E   + +
Sbjct: 83  --QILQTNGATGANLLVLYSLIE------PGDHVISLYPTYQQLYDIPKSLGAEVDLWQI 134

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
           +E   W   + +L + I         + I I N  NPTG V+ +  ++++++ A     +
Sbjct: 135 EEENGWLPDLEKLRQLIRP-----TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAY 189

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
           + +DEVY+     +     S     +E+ +  K + + S    SK Y +   G+R G+  
Sbjct: 190 ILSDEVYRSFSELD---VPSI----IEVYD--KGIAVNSL---SKTYSL--PGIRIGWVA 235

Query: 251 --SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQR-AQAVLDGCR 307
              +V         +       M+C  V                       AQ  L   +
Sbjct: 236 ANHQVT------DILRDYRDYTMICAGVFD------------------DLVAQLALAHYQ 271

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
                    + +       E +               ++   ++         +S     
Sbjct: 272 ---------EIL-------ERNRHIL-----------EENLAILDQWIEEEPLVSYIRPA 304

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
               +F ++ +              P   +  +LL+  G+ +VPG  F    G  + R
Sbjct: 305 VVSTSFVKIAVDM------------PMEDFCLQLLQEHGVLLVPGNRFE-RDG--YVR 347

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score =  132 bits (333), Expect = 7e-34
 Identities = 48/407 (11%), Positives = 103/407 (25%), Gaps = 60/407 (14%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P    +     L    G +   Y +  G+  +++  +++           +  + + G+ 
Sbjct: 59  PQIGIETEIQKLR--EGVA-SIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSM 115

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
            G      +              L   P + L          +   + L E +   L   
Sbjct: 116 QGCFVSFLVANRTHKN--REYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREK 173

Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
                 T         +I+  NP NPT Q +T E ++ I + A +  + +  D  Y    
Sbjct: 174 LESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMD 228

Query: 205 YAEGSKFYSFKKV----LVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPG 259
           +      +  + +    +    +    +   S    SK +     G R G   ++     
Sbjct: 229 F-RKDYSHPGEPLYQPSVANYTD--NYILALSS---SKAFSY--AGQRIGV--LMISGKL 278

Query: 260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ-AVLDGCRGQSVGQTVMDC 318
            +        +         +S   L+          Q    A+L  C            
Sbjct: 279 YEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN----------- 327

Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
             +       S  ++ R+ + +              FN +     N      + F     
Sbjct: 328 --DGEYNFRDSVIEYGRKARIMKKMFLDNG------FNIVYDKDGNEPLADGFYFT---- 375

Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                     +G   S     + +      I       +        
Sbjct: 376 -------VGYKGM-DSSKLIEKFVRYGMCAITLKTTGSK-RNEAMRI 413

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score =  129 bits (328), Expect = 2e-33
 Identities = 83/413 (20%), Positives = 132/413 (31%), Gaps = 106/413 (25%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P+   +R            V  Y+ S GI  +R   A Y  RR       ++V+++ G S
Sbjct: 58  PEVFFERIYENKPE-----VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGS 112

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
           + I     ++        PG  +L+  P Y  Y+A      ++ I       + + +P  
Sbjct: 113 EAILFSFAVIAN------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIP-Q 165

Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
            LE  I E       + IV+ NP NPTG V  K+ ++ +++ A R  LFL  DEVY + V
Sbjct: 166 NLESFINE-----RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV 220

Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFM--------SCSKGY-MGECGLRGGYSEVIN 255
           +    +F S                  S          S SK +    CG R G   +I 
Sbjct: 221 F--RGEFASA----------------LSIESDKVVVIDSVSKKFSA--CGARVGC--LIT 258

Query: 256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQT 314
            +  + +   K     L P +L                   Q     +L+          
Sbjct: 259 RNEELISHAMKLAQGRLAPPLLE------------------QIGSVGLLNLDD------- 293

Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
                                    V ++ ++R + V                GA Y   
Sbjct: 294 --SFF------------------DFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITA 333

Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTY--HFR 425
           +       +    AE     +L  F +   T   + P  GF   PG      R
Sbjct: 334 E-------LPVEDAEEFARWMLTDFNMDGET-TMVAPLRGFYLTPGLGKKEIR 378

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score =  125 bits (317), Expect = 6e-32
 Identities = 72/403 (17%), Positives = 129/403 (32%), Gaps = 94/403 (23%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P    +     L+         YT + G+  +R+ +A+      G   D   V+++ G+S
Sbjct: 46  PRGAVEALAKSLE--TDAL--GYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS 101

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
            G       L +       G  V I  P YP Y   L    +  +        +     +
Sbjct: 102 GGFLLAFTALFD------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA 155

Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
           +                +++ +P NPTG +L    +  +I+ A  +     +DE+Y    
Sbjct: 156 DFAGLDL--------AGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIE 207

Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAM 263
           Y   +K  +     +E+ +  +   + SF   SK + M   G R G+  ++  +  V+ +
Sbjct: 208 Y--EAKAVTA----LELTD--ECYVINSF---SKYFSM--TGWRVGW--MVVPEDQVRVV 252

Query: 264 LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQTVMDCVVNP 322
              + +  +C    +                  Q A  A LD                  
Sbjct: 253 ERIAQNMFICAPHAS------------------QVAALAALDC----------------- 277

Query: 323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKA 382
                        E Q+ LD  K   K++ +           P  GA Y +         
Sbjct: 278 -----------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYA-------- 318

Query: 383 IAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                      S  +A E+LE+ G+ + PG  F    G    R
Sbjct: 319 --DVSDLTD-DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLR 358

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score =  126 bits (318), Expect = 7e-32
 Identities = 78/424 (18%), Positives = 149/424 (35%), Gaps = 80/424 (18%)

Query: 18  PQLFDD---PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
            QL  D        + +  A           +  + D  G+   ++ +  +++   G   
Sbjct: 48  NQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107

Query: 75  DWQ--DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFN-MEQI 129
            +    ++L+AGA+   ++ +  L +      PG  VLIP P YP +   L     +E +
Sbjct: 108 TFDPNHLVLTAGATSANETFIFCLAD------PGEAVLIPTPYYPGFDRDLKWRTGVEIV 161

Query: 130 GYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
             +   S  + +  + LE +  EA K     + +++ NP NP G  +T+  +  ++ F  
Sbjct: 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVE 221

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFM----SCSKGYMGEC 244
            + + L +DE+Y    +     F S  +VL +     ++ E+   +    S SK   G  
Sbjct: 222 DKGIHLISDEIYSGTAF-SSPSFISVMEVLKD-RNCDENSEVWQRVHVVYSLSKDL-GLP 278

Query: 245 GLRGGYSEVINLDPGVKAMLHK-SISAMLC-PTVLALVSLPQLFDDPRFPDDVKQRAQAV 302
           G R G   + + D  V A   K S   ++   T   L ++     D +   +        
Sbjct: 279 GFRVGA--IYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLS---DKKLTKN-------- 325

Query: 303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS 362
                                      Y   + +       LKQR K +        G+S
Sbjct: 326 ---------------------------YIAENHK------RLKQRQKKLVSGLQKS-GIS 351

Query: 363 CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG-QVPGT 421
           C      ++ +  M+     +     E     +    +++    + I PG+      PG 
Sbjct: 352 CLNGNAGLFCWVDMR---HLLRSNTFEA---EMELWKKIVYEVHLNISPGSSCHCTEPG- 404

Query: 422 YHFR 425
             FR
Sbjct: 405 -WFR 407

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score =  126 bits (317), Expect = 3e-31
 Identities = 69/416 (16%), Positives = 133/416 (31%), Gaps = 50/416 (12%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR----DGQPADWQDVILS 82
              V +     +         +Y       +    +  Y  +     D   A+  D+  +
Sbjct: 118 DKVVAEWVNGAVAN-------NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPT 170

Query: 83  AGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQ 138
            G +  I      L E+    K G  + I  P +  Y     L ++ + ++  +  E   
Sbjct: 171 EGGTAAIVYAFHSLAENHL-LKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKND 229

Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK-LFLFAD 197
           W +  +E+E+    + K     A++++NP NPT +      +  I +   +   L + +D
Sbjct: 230 WEIEPNEIEKLKDPSIK-----ALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISD 284

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY---SEV 253
           EVY   V      F S   V+     PY +M + S+   SK +     G R G    +E 
Sbjct: 285 EVYGAFVP----NFKSIYSVV-----PYNTMLVYSY---SKLFGC--TGWRLGVIALNEK 330

Query: 254 INLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ 313
              D  +  +    +  +       ++   ++    R   D +        G       Q
Sbjct: 331 NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQ--Q 388

Query: 314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF 373
            +             +              + +R   + D          +      Y+ 
Sbjct: 389 IMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDT-NTHYYSL 446

Query: 374 PQMKLPAKAIAKAKAEGKCP----SVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
             +   A+ I   +           V +  +L E+ G+ +V G GFG  PG    R
Sbjct: 447 IDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPG--ELR 500

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score =  121 bits (306), Expect = 2e-30
 Identities = 72/420 (17%), Positives = 118/420 (28%), Gaps = 104/420 (24%)

Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-V 79
             +P  P      +  V     G    +YT+  G   IR  +A  ++   G P D +D +
Sbjct: 51  AHEPT-PGAFDLFSAGVQS--GGVQ--AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGL 105

Query: 80  ILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLY--SASLAEFNMEQI--GYYL 133
           I++ G    +   +   +        G  V I  P Y          E  M  +   Y  
Sbjct: 106 IITPGTQGALFLAVAATVA------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS 159

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
            +  + GL ++ LE +          R  +  NP NP G V + E I  I   A R    
Sbjct: 160 ADETRAGLDLTGLEEAFKA-----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT 214

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
           + AD++Y    Y  G+ +   +       E    + +      SK   +   G R G   
Sbjct: 215 VIADQLYSRLRY-AGASYTHLRAEAAVDAE--NVVTIMGP---SKTESL--SGYRLGVAF 266

Query: 251 --SEVINLDPGVKAM--LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDG 305
               +I        M  L  +I   L     +                  Q   +   D 
Sbjct: 267 GSRAII------ARMEKLQ-AIV-SLRAAGYS------------------QAVLRGWFDE 300

Query: 306 CRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP 365
                        +       E    +            +     +       EG+    
Sbjct: 301 A---------PGWM-------EDRIARH-----------QAIRDELLHVLRGCEGVFART 333

Query: 366 VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
            Q   Y FP++    K               +   L  + G+ + PG  F         R
Sbjct: 334 PQAGSYLFPRLP---KLAVA--------PAEFVKILRLQAGVVVTPGTEFSP-HTADSVR 381

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score =  122 bits (307), Expect = 6e-30
 Identities = 82/419 (19%), Positives = 141/419 (33%), Gaps = 60/419 (14%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRH-VAQYISRR---DGQPADWQDVILS 82
              + +    +L         +Y   P +  I    V QYI R    D  P++  ++   
Sbjct: 119 AAFLHEMVDGILGC-------NYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAV 171

Query: 83  AGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQ 138
            G +  +  + + L  +    K G  V I +P +  Y     LA++ +E++    D S  
Sbjct: 172 EGGTAAMAYIFESLKLNGL-LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLN 230

Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFA--HREKLFLFA 196
           W  P SEL++    A K         +NP NP    + + +++ +      HR  L +  
Sbjct: 231 WQYPDSELDKLKDPAIK-----IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILT 285

Query: 197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL 256
           D+VY          F S   +      P  ++ + SF   SK + G  G R G       
Sbjct: 286 DDVYGTFAD----DFQSLFAIC-----PENTLLVYSF---SKYF-GATGWRLGV------ 326

Query: 257 DPGVKAMLHKS-ISAMLC---PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG 312
                   H+  +  +          +    +          +K   + V D  R  ++ 
Sbjct: 327 -----VAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADS-RAVALN 380

Query: 313 QTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC--NPVQGAM 370
            T         Q    S      E      +LKQ  +    T     GM    +      
Sbjct: 381 HTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDY 440

Query: 371 YAFPQMK-LPAKAIAKAKAEGKCP---SVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           Y    ++ + AK   +A +E       +    F + + TGI ++PG GFG        R
Sbjct: 441 YTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRP--SGR 497

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score =  113 bits (286), Expect = 7e-28
 Identities = 86/415 (20%), Positives = 141/415 (33%), Gaps = 127/415 (30%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P  +       L    G++   YTDS GI  +R  +++    +        ++I++ G+S
Sbjct: 44  PKPIVDEGIKSLK--EGKT--HYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSS 99

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLP 142
            G+   L  +I+       G  VLI  P YP Y                          P
Sbjct: 100 LGLFFALSSIID------DGDEVLIQNPCYPCYKNFIRFLG----------------AKP 137

Query: 143 IS------ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
           +        LE ++++       +AI+I +P NP G+V+ +E    I +FA+    ++ +
Sbjct: 138 VFCDFTVESLEEALSD-----KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIIS 188

Query: 197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYS---- 251
           DE+Y   VY    K YS  +   E  E  K++ +  F   SK Y M   G R GY     
Sbjct: 189 DEIYNGLVY--EGKCYSAIE-FDENLE--KTILINGF---SKLYAM--TGWRIGYVISND 238

Query: 252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQS 310
           E+I      +A+L    +  +    ++                  Q A     +      
Sbjct: 239 EII------EAILKLQQNLFISAPTIS------------------QYAALKAFEK----- 269

Query: 311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAM 370
                           E       +E         +R ++V        G   N   GA 
Sbjct: 270 --------------ETEREINSMIKE-------FDRRRRLVLKYVKDF-GWEVNNPIGAY 307

Query: 371 YAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           Y FP +    +  A                LL+   + + PG GFG   G  + R
Sbjct: 308 YVFPNIGEDGREFAYK--------------LLKEKFVALTPGIGFGS-KGKNYIR 347

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score =  112 bits (284), Expect = 2e-27
 Identities = 92/412 (22%), Positives = 167/412 (40%), Gaps = 103/412 (25%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
           P  +K+ A+  LD  +G +   Y  + G+  +R  +A+ + +++G  AD +  +++  GA
Sbjct: 41  PQHIKEYAKEALD--KGLT--HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGA 96

Query: 86  SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGL 141
           +      L   ++       G  VLIP P +  Y+    LA    + +     E  ++ L
Sbjct: 97  NQAFLMGLSAFLK------DGEEVLIPTPAFVSYAPAVILAG--GKPVEVPTYEEDEFRL 148

Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
            + EL++ +T+       RA++I +P NPTG VLTK+++++I  F     L + +DEVY+
Sbjct: 149 NVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYE 203

Query: 202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY----SEVINL 256
             +Y + ++ YS    L  M E  +++ +  F   SK + M   G R G+    S +I  
Sbjct: 204 HFIY-DDARHYSIAS-LDGMFE--RTITVNGF---SKTFAM--TGWRLGFVAAPSWII-- 252

Query: 257 DPGVKAM--LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQ 313
               + M           CP                      Q A    L   R      
Sbjct: 253 ----ERMVKFQM--YNATCPVTFI------------------QYAAAKALKDERS----- 283

Query: 314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF 373
                V       E   +++            +R K+V    N + G+     +GA Y F
Sbjct: 284 --WKAV-------EEMRKEY-----------DRRRKLVWKRLNEM-GLPTVKPKGAFYIF 322

Query: 374 PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           P+++                S  ++  +L+   + +VPG+ FG+  G  + R
Sbjct: 323 PRIR---DTGLT--------SKKFSELMLKEARVAVVPGSAFGK-AGEGYVR 362

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score =  106 bits (268), Expect = 2e-25
 Identities = 73/426 (17%), Positives = 132/426 (30%), Gaps = 130/426 (30%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P  V    + ++      ++  YT + G    R  +A++++   G   +  ++ ++ GA+
Sbjct: 50  PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109

Query: 87  DGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYS-------ASLAEFNMEQIGYYLDES 136
             +    + L              +   P +P Y        A L E   +   + +D  
Sbjct: 110 ASLSICFRALTS------DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQID-- 161

Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR------E 190
                    LE  I       + R ++I +P NP+G V ++E I+ +     +       
Sbjct: 162 ------FDALEERINA-----HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR 210

Query: 191 KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-M-GECGLRG 248
            +F+ ADE Y++ VY +G K         +  +   ++   S+   SK   + GE   R 
Sbjct: 211 PIFIIADEPYREIVY-DGIKVPFVT----KYYD--NTLVCYSY---SKSLSLPGE---RI 257

Query: 249 GY----SEVINLDPGVKAMLHKS-ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAV 302
           GY     EV +      A+         +C   L                   Q+     
Sbjct: 258 GYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLF------------------QKMIVKC 299

Query: 303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS 362
                      T                          +++ K+   ++ +    I G  
Sbjct: 300 QGA--------TGD------------------------INAYKENRDLLYEGLTRI-GYH 326

Query: 363 CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP---SVLYAFELLERTGICIVPGAGFGQVP 419
           C    GA Y F                 K     S  +  +  E   + IV   GFG  P
Sbjct: 327 CFKPDGAFYMFV----------------KALEDDSNAFCEKAKEE-DVLIVAADGFG-CP 368

Query: 420 GTYHFR 425
           G    R
Sbjct: 369 G--WVR 372

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score =  103 bits (258), Expect = 5e-24
 Identities = 79/430 (18%), Positives = 145/430 (33%), Gaps = 79/430 (18%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           V+L Q F D   PD   +  Q  +       +  YT + G   + + +A +     GQ  
Sbjct: 31  VNLGQGFPDFPPPDFAVEAFQHAVS--GDFMLNQYTKTFGYPPLTKILASFFGELLGQEI 88

Query: 75  DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFN------ 125
           D   +V+++ G    + +  + L++       G  V+I  P +  Y              
Sbjct: 89  DPLRNVLVTVGGYGALFTAFQALVD------EGDEVIIIEPFFDCYEPM-TMMAGGRPVF 141

Query: 126 -----MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
                       L  S  W L   EL    T        +A+V+  P NP G+V ++E +
Sbjct: 142 VSLKPGPIQNGELGSSSNWQLDPMELAGKFTS-----RTKALVLNTPNNPLGKVFSREEL 196

Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
           + +     +  +    DEVYQ  VY +G +  S    L  M E  +++ + S     K +
Sbjct: 197 ELVASLCQQHDVVCITDEVYQWMVY-DGHQHISIAS-LPGMWE--RTLTIGSA---GKTF 249

Query: 241 MGECGLRGGYSEVINLDPGVKAMLH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA 299
               G + G+  V+  D  +K +      S   CPT                     Q A
Sbjct: 250 -SATGWKVGW--VLGPDHIMKHLRTVHQNSVFHCPTQS-------------------QAA 287

Query: 300 QAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE 359
            A               +      +     + QF +        +++    +  +  S+ 
Sbjct: 288 VAE------------SFEREQLLFRQPSSYFVQFPQA-------MQRCRDHMIRSLQSV- 327

Query: 360 GMSCNPVQGAMYAFPQM-KLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV 418
           G+     QG+ +    +     K      A  +     +   +++  G+  +P + F  V
Sbjct: 328 GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV 387

Query: 419 PGTYHFRQQV 428
           P   HF   +
Sbjct: 388 PHQKHFDHYI 397

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score =  102 bits (257), Expect = 8e-24
 Identities = 60/411 (14%), Positives = 116/411 (28%), Gaps = 102/411 (24%)

Query: 26  FP-DDVKQRAQAVLD-GCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSA 83
              D  +     +++ G    ++ +Y    G   +   +A  +    G   + Q++ L+ 
Sbjct: 46  AMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN 105

Query: 84  GASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL------AEFNMEQIGYYLDESK 137
           G+      +  L             +  P  P Y            F   +    L    
Sbjct: 106 GSQSAFFYLFNLFAGRRADGST-KKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG 164

Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
           Q+   +      I E         I +  P NPTG V+T E +  + + A++  + L  D
Sbjct: 165 QFKYHVDFEHLHIGEETG-----MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVID 219

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS------FMSCSKGYMGECGLRGGY- 250
             Y       G  F          G  +              MS SK  +   G R G  
Sbjct: 220 NAY-------GVPFP---------GIIFSEARPLWNPNIILCMSLSKLGLP--GSRCGII 261

Query: 251 ---SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
               + I       A+ + +    L P  +                        + +  +
Sbjct: 262 IANDKTI------TAIANMNGIISLAPGGMG------------------PA--MMCEMIK 295

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVA--DTFNSIEGMSCNP 365
              + +     +       +P Y Q             +  + +A    + S E    + 
Sbjct: 296 RNDLLRLSETVI-------KPFYYQ-------------RVQQTIAIIRRYLSEERCLIHK 335

Query: 366 VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
            +GA++ +         I               ++ L+  G+ +VPG  F 
Sbjct: 336 PEGAIFLWL--WFKDLPITTEL----------LYQRLKARGVLMVPGHYFF 374

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score =  102 bits (257), Expect = 9e-24
 Identities = 64/421 (15%), Positives = 134/421 (31%), Gaps = 78/421 (18%)

Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV 79
           +  P++  +    A    D    Q    YT   G   + + +++  S+   +  +   +V
Sbjct: 49  YHAPKYALNALAAAANSPDPLANQ----YTRGFGHPRLVQALSKLYSQLVDRTINPMTEV 104

Query: 80  ILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFN---------MEQ 128
           +++ GA + + + ++  ++       G  V+I  P +  Y     +              
Sbjct: 105 LVTVGAYEALYATIQGHVD------EGDEVIIIEPFFDCYEPM-VKAAGGIPRFIPLKPN 157

Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
                  S  W L  +ELE    E       + I+I  P NP G+V+ +  ++ +     
Sbjct: 158 KTGGTISSADWVLDNNELEALFNE-----KTKMIIINTPHNPLGKVMDRAELEVVANLCK 212

Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG 248
           +  +   +DEVY+  V+ E  +       L  M E  +++ + S     K +    G + 
Sbjct: 213 KWNVLCVSDEVYEHMVF-EPFEHIRICT-LPGMWE--RTITIGSA---GKTF-SLTGWKI 264

Query: 249 GYSEVINLDPGVKAMLH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
           G+      +  +K +          C T +                   Q A AV     
Sbjct: 265 GW--AYGPEALLKNLQMVHQNCVYTCATPI-------------------QEAIAV----- 298

Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
                    +  +   +  E  +   S E       L  +   +A     + GM+    Q
Sbjct: 299 -------GFETELKRLKSPECYFNSISGE-------LMAKRDYMASFLAEV-GMNPTVPQ 343

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
           G  +           +   +         +   + +  G+  +P + F   P  +     
Sbjct: 344 GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDF 403

Query: 428 V 428
           V
Sbjct: 404 V 404

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  102 bits (255), Expect = 1e-23
 Identities = 60/409 (14%), Positives = 116/409 (28%), Gaps = 78/409 (19%)

Query: 21  FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ--PADWQD 78
             D +            L       +  Y    GIE +R    Q + R + +    +   
Sbjct: 59  NKDGKMFASSLDAMFNDLTP---DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSR 115

Query: 79  VILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDES 136
            I++   + G+  V  L +           +L+P   +  Y       N   +  Y    
Sbjct: 116 PIVTNALTHGLSLVGDLFVN------QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFD 169

Query: 137 KQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFA-----HRE 190
           K        L  ++    K    + I+I+N P NPTG   T + +  I++          
Sbjct: 170 KDGHYTTDSLVEALQSYNKD---KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT 226

Query: 191 KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
           K+    D+ Y    Y E     S    L  +               +K +    G R G+
Sbjct: 227 KVIAVVDDAYYGLFY-EDVYTQSLFTALTNLHSNAILPIRLD--GATKEF-FAWGFRVGF 282

Query: 251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQS 310
                 D   K +    + A +   + + +S       P                   QS
Sbjct: 283 MTFGTSDQTTKEV----LEAKVKGLIRSNISSG-----PLP----------------TQS 317

Query: 311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQ 367
             + V+    N          QF +E +  + +LK+R ++  +   +             
Sbjct: 318 AVKHVLK---NNK--------QFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFN 366

Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
              +   ++            E           L+++  I ++      
Sbjct: 367 SGYFMAIKVH-------DVDPEA------LRKHLIDKYSIGVIALNATD 402

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score = 98.4 bits (246), Expect = 1e-22
 Identities = 62/402 (15%), Positives = 114/402 (28%), Gaps = 100/402 (24%)

Query: 35  QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
            ++       +   Y    G+  +R+ +++   R        +++ +S GA   +  +L 
Sbjct: 57  SSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDA---KEIFISDGAKVDLFRLLS 113

Query: 95  LLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY-LDESKQWGLPISELERSIT 151
                     P   V I  P YP Y         ++I      +   +     E      
Sbjct: 114 FF-------GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTH--- 163

Query: 152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF 211
                     + + +P NPTG VL K+ ++ I+ +A   ++ +  D  Y   +  + S  
Sbjct: 164 -------IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFIS-DPSLP 215

Query: 212 YSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAML 264
            S       +   +E              S SK       G+R G++ VI  +    A  
Sbjct: 216 KSIFEIPDARFCAIE------------INSFSKPLGF--AGIRLGWT-VIPQE-LTYADG 259

Query: 265 HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ 324
           H  I                             R               T  +    P Q
Sbjct: 260 HFVIQDWE-------------------------RFL------------STTFNGASIPAQ 282

Query: 325 P-GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAI 383
             G          +   +   ++ + ++     +  G      + A Y +   K      
Sbjct: 283 EAGVAGLS--ILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWV--KPT---- 333

Query: 384 AKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                +            L    I I PG GFG+  G+   R
Sbjct: 334 -----QANISDRDLFDFFLREYHIAITPGIGFGR-SGSGFVR 369

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 20/204 (9%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           V+L Q F D   P  + Q AQ  + G   Q    Y   PG   +RR +A    R  G   
Sbjct: 28  VNLGQGFPDEDGPPKMLQAAQDAIAGGVNQ----YPPGPGSAPLRRAIAAQRRRHFGVDY 83

Query: 75  DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGY 131
           D + +V+++ GA++ I + +  L+E      PG  VL+  P Y  YS  +A     ++  
Sbjct: 84  DPETEVLVTVGATEAIAAAVLGLVE------PGSEVLLIEPFYDSYSPVVAMAGAHRVTV 137

Query: 132 YLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE 190
            L  + + + L    L R++T        RA++I +P NPTG VL+   +  I + A   
Sbjct: 138 PLVPDGRGFALDADALRRAVTP-----RTRALIINSPHNPTGAVLSATELAAIAEIAVAA 192

Query: 191 KLFLFADEVYQDNVYAEGSKFYSF 214
            L +  DEVY+  V+ + ++    
Sbjct: 193 NLVVITDEVYEHLVF-DHARHLPL 215

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 26/129 (20%)

Query: 313 QTVMDCVVNPPQP--------GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
           Q +      P QP         +                L+ R   +A     I G + +
Sbjct: 260 QYLSYVGGAPFQPAVALALDTEDAWVAALRNS-------LRARRDRLAAGLTEI-GFAVH 311

Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
              G  +     +            G   S  +   L E+ G+  +P + F         
Sbjct: 312 DSYGTYFLCADPR----------PLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQAS 361

Query: 425 RQQVWWRHY 433
           +Q   W H 
Sbjct: 362 QQADVWNHL 370

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score = 97.6 bits (244), Expect = 3e-22
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 20/203 (9%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           ++L Q F D   P  +++R    +     Q    Y    G++ +R  +AQ   R  G   
Sbjct: 33  INLSQGFPDFDGPRYLQERLAHHVAQGANQ----YAPMTGVQALREAIAQKTERLYGYQP 88

Query: 75  DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGY 131
           D   D+ ++AGA++ + + +  L+        G  V+   P Y  Y+ ++A         
Sbjct: 89  DADSDITVTAGATEALYAAITALVR------NGDEVICFDPSYDSYAPAIALSGGIVKRM 142

Query: 132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK 191
            L     + +   E    ++E       R +++  P NP+  V  + +   + +     +
Sbjct: 143 ALQPP-HFRVDWQEFAALLSE-----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHE 196

Query: 192 LFLFADEVYQDNVYAEGSKFYSF 214
           +F+ +DEVY+   +       S 
Sbjct: 197 IFVISDEVYEHINF-SQQGHASV 218

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 67/398 (16%), Positives = 120/398 (30%), Gaps = 95/398 (23%)

Query: 34  AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
           A+   +    +    Y    G + +R  +A+      G   D  DV +S GA   I S L
Sbjct: 79  AKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDI-SRL 135

Query: 94  KLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGLPISELERS 149
           +++            + +  P YP Y  S  +     +             +  +     
Sbjct: 136 QVMFG------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF 189

Query: 150 ITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS 209
             +         I   +P NPTG   T+E +  +++FA +    +  D  Y   +     
Sbjct: 190 FPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS--DD 247

Query: 210 KFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKA 262
              S       ++V +E              S S        G+R G++ VI     +  
Sbjct: 248 NPRSIFEIPGAEEVAME------------TASFSNYAGF--TGVRLGWT-VIP--KKLLY 290

Query: 263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP 322
                ++                            R               T  +   N 
Sbjct: 291 SDGFPVAKDF------------------------NRII------------CTCFNGASNI 314

Query: 323 PQPGEPSYEQFSREKQSVLDSL----KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
            Q G  +    + E    +  +    K+   ++ DTF S+ G      + A Y +  +  
Sbjct: 315 SQAG--ALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVW--VHF 369

Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
           P +            S     E+LE+T +   PG+GFG
Sbjct: 370 PNQ-----------SSWDVFAEILEKTHVVTTPGSGFG 396

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 33/215 (15%)

Query: 15  VSLPQLFDDPRF--PDDVKQR-AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDG 71
           V+L Q F  P    P  VK+  ++A       Q    YT   G   + + ++    +   
Sbjct: 26  VNLGQGF--PDISPPSYVKEELSKAAFIDNMNQ----YTRGFGHPALVKALSCLYGKIYQ 79

Query: 72  QPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLA------ 122
           +  D   +++++ GA   + + ++ L++      PG  V+I +P Y  Y   +       
Sbjct: 80  RQIDPNEEILVAVGAYGSLFNSIQGLVD------PGDEVIIMVPFYDCYEPMVRMAGAVP 133

Query: 123 ---EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN 179
                  +        S  W     ELE   +        +AI++  P NP G+V T++ 
Sbjct: 134 VFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-----KTKAIILNTPHNPLGKVYTRQE 188

Query: 180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF 214
           +Q I     +      +DEVY+  VY  G      
Sbjct: 189 LQVIADLCVKHDTLCISDEVYEWLVY-TGHTHVKI 222

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 71/410 (17%), Positives = 123/410 (30%), Gaps = 120/410 (29%)

Query: 34  AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
           A+A       +    Y    G   +R  VA       G+ AD  ++ +S G+   I  + 
Sbjct: 92  AKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDIARIQ 149

Query: 94  KLLIEDVDGKKPG--VLIPIPQYPLYSAS---------LAEFNMEQIGYY-LDESKQWGL 141
            +             V +  P YP+Y  +               + I Y   +    +  
Sbjct: 150 MMF-------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHF-F 201

Query: 142 PISELERSITEARKHCNPRA-IVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
           P  +L ++          R  I+    P NPTG   T+  + +++ FA +    L  D  
Sbjct: 202 P--DLSKA---------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAA 250

Query: 200 YQDNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSE 252
           Y   +        +        +V +E              S SK       G+R G++ 
Sbjct: 251 YALYIS-NPDCPKTIYEIPGADEVAIE------------TCSFSKYAGF--TGVRLGWT- 294

Query: 253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG 312
           V+       A      +                                     R  +  
Sbjct: 295 VVPKA-LKYANGEPVHADWN----------------------------------RVMT-- 317

Query: 313 QTVMDCVVNPPQPG------EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV 366
            T  +   N  Q G          ++      +++   K+ A+++  TF  + G S    
Sbjct: 318 -TCFNGASNIVQAGGLACLQPEGLKEM----NAMIKFYKENAQILKTTFTEM-GFSVYGG 371

Query: 367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
             A Y +  +  P K           PS     E+LER  I   PG+G+G
Sbjct: 372 DDAPYIW--VGFPGK-----------PSWDVFAEILERCNIVTTPGSGYG 408

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score = 93.5 bits (232), Expect = 1e-20
 Identities = 58/412 (14%), Positives = 111/412 (26%), Gaps = 84/412 (20%)

Query: 23  DPRFPD-DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISR---RDGQP-ADWQ 77
           D  F +   KQ  +A           SY  +P    I   + + I       G   A  +
Sbjct: 65  DGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR 124

Query: 78  DVILSAGASDGIKSVLKLLIEDVDGK--KPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
            ++   G +  I  ++  L  ++      P   V+   P YP++         EQ  Y+ 
Sbjct: 125 YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--------EQTKYFD 176

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
            +   W    +                  ++ +P NP G +              R  + 
Sbjct: 177 KKGYVWAGNAANYVNVSNP-----EQYIEMVTSPNNPEGLL--------------RHAVI 217

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV 253
                +Y D VY     +             YK+ E     + SK   G  G R G++ +
Sbjct: 218 KGCKSIY-DMVY-YWPHYTPI---------KYKADEDILLFTMSKFT-GHSGSRFGWALI 265

Query: 254 INLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ 313
            +       +L+                  QL            R+  VL          
Sbjct: 266 KDESV-YNNLLNYMTKNTEGTPRET-----QL------------RSLKVLK--------- 298

Query: 314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF 373
                        +                L++R   +    +  +  S   +  + Y  
Sbjct: 299 -------EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCN 351

Query: 374 PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
              ++   + + A  + +       ++  +   I    G GF       + R
Sbjct: 352 YFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSR--YVR 401

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 26/203 (12%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           ++L Q F     P    + AQ  LD      V  Y+ + G   +   + +  S       
Sbjct: 60  INLGQGFFSYSPPQFAIKEAQKALDI---PMVNQYSPTRGRPSLINSLIKLYSPIYNTEL 116

Query: 75  DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAE------- 123
             ++V ++ GA++GI S L  L+        G  V++  P +  Y  +  L         
Sbjct: 117 KAENVTVTTGANEGILSCLMGLLN------AGDEVIVFEPFFDQYIPNIELCGGKVVYVP 170

Query: 124 -FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD 182
               +++       ++W +   + E++IT        +A++I  P NP G+V T+E +  
Sbjct: 171 INPPKELDQRNTRGEEWTIDFEQFEKAITS-----KTKAVIINTPHNPIGKVFTREELTT 225

Query: 183 IIKFAHREKLFLFADEVYQDNVY 205
           +     +  + + +DEVY+   +
Sbjct: 226 LGNICVKHNVVIISDEVYEHLYF 248

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 87/422 (20%), Positives = 151/422 (35%), Gaps = 126/422 (29%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P  + + A+A L+  +G++   Y  + G   +R  +AQ + R +G      +++++ G  
Sbjct: 45  PKHIVEAAKAALE--QGKT--RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGK 100

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYSASLAEFNMEQIGY--------YL 133
             I +++  +IE      PG  V+IP P    YP           E +            
Sbjct: 101 QSIFNLMLAMIE------PGDEVIIPAPFWVSYP-----------EMVKLAEGTPVILPT 143

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
               Q+ +   ++ ++IT        + +V   P NPTG V T + ++ I + A    L+
Sbjct: 144 TVETQFKVSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLW 198

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
           + +DE+Y+  +Y + ++  S      E  E             +K Y M   G R G+  
Sbjct: 199 VLSDEIYEKILY-DDAQHLSIGAASPEAYE-----RSVVCSGFAKTYAM--TGWRVGFLA 250

Query: 251 --SEVINLDPGVKAML----HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVL 303
               ++      KA      H S S        A                  Q    A  
Sbjct: 251 GPVPLV------KAATKIQGH-STS---NVCTFA------------------QYGAIAAY 282

Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
           +            DCV       +     F+  ++ +LD+L           N++ G+ C
Sbjct: 283 ENS---------QDCV-------QEMLAAFAERRRYMLDAL-----------NAMPGLEC 315

Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
               GA Y FP +    K            S+ +  ELL++  +  VPGA FG       
Sbjct: 316 PKPDGAFYMFPSIA---KTGRS--------SLDFCSELLDQHQVATVPGAAFG-ADD--C 361

Query: 424 FR 425
            R
Sbjct: 362 IR 363

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score = 88.2 bits (219), Expect = 5e-19
 Identities = 64/430 (14%), Positives = 120/430 (27%), Gaps = 98/430 (22%)

Query: 13  ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ 72
           A +          +            +     S+ +Y++  G       +  + +R    
Sbjct: 43  AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDW 102

Query: 73  PADWQDVILSAGASDGIKSVLKLL-----------IEDVDGKKPGVLIPIPQYPLYSASL 121
               +++ L+ G+ +    +  L             E     K  +L   P+Y  YS   
Sbjct: 103 NLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162

Query: 122 AEFNM--------EQIGYYLDESK-QWGLPISELERSITEARKHCNPRAIVIINPGNPTG 172
            E           +++ +  +E   ++ +    LE             AI    P NPTG
Sbjct: 163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG--RIGAICCSRPTNPTG 220

Query: 173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS 232
            VLT E +  + + A R  + L  D  Y       G  F +       +     ++   S
Sbjct: 221 NVLTDEEMAHLAEIAKRYDIPLIIDNAY-------GMPFPNIIYSDAHLNWDNNTILCFS 273

Query: 233 FMSCSKGYMGECGLRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD 288
               SK  +   G+R G     ++VI      +A+   +    L PT             
Sbjct: 274 L---SKIGL--PGMRTGIIVADAKVI------EAVSAMNAVVNLAPTRFG---------- 312

Query: 289 PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRA 348
                                 + Q   + +        P Y+             KQ  
Sbjct: 313 --------AA--IATPLVANDRIKQLSDNEIK-------PFYQ-------------KQAT 342

Query: 349 KMVA--DTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG 406
             V           +  +  +GA++ +   K           +    ++     L  + G
Sbjct: 343 LAVKLLKQALGDYPLMIHKPEGAIFLWLWFK-----------DLPISTLDLYERLKAK-G 390

Query: 407 ICIVPGAGFG 416
             IVP   F 
Sbjct: 391 TLIVPSEYFF 400

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 27/195 (13%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           V+L Q F     P  + +  +  L          Y    G+  +R  +A+  +       
Sbjct: 28  VNLGQGFPSNPPPPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEFAV------ 76

Query: 75  DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIG 130
           + + V++++GA++ +  +L+ L+       PG  V++  P + +Y     LA      + 
Sbjct: 77  EPESVVVTSGATEALYVLLQSLVG------PGDEVVVLEPFFDVYLPDAFLAGAKARLVR 130

Query: 131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE 190
             L     + L +S LE+++T        RA+++  P NPTG V  +  ++ I + A   
Sbjct: 131 LDLTPE-GFRLDLSALEKALTP-----RTRALLLNTPMNPTGLVFGERELEAIARLARAH 184

Query: 191 KLFLFADEVYQDNVY 205
            LFL +DEVY +  Y
Sbjct: 185 DLFLISDEVYDELYY 199

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score = 85.3 bits (212), Expect = 4e-18
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 45/237 (18%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
           P  + ++   V    R  + G Y+ S GI  +RR ++ +   R     D +   I++ G+
Sbjct: 52  PPHIVEKLCTVAQ--REDTHG-YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS 108

Query: 86  SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGL 141
            +G+  ++   ++       G  +L+P P YP++     +A   +      L     +  
Sbjct: 109 KEGLAHLMLATLD------HGDTILVPNPSYPIHIYGAVIAGAQV--RSVPLVPGIDFFN 160

Query: 142 PISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
            +    R      +      ++I+  P NPT Q +  +  + ++  A +  + +  D  Y
Sbjct: 161 ELERAIRESIPKPR------MMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAY 214

Query: 201 QDNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
            D VY +G K  S       K + VE            F + SK Y M   G R G+
Sbjct: 215 ADIVY-DGWKAPSIMQVPGAKDIAVE------------FFTLSKSYNMA--GWRIGF 256

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
           +QR  ++        G      + +MY +   K+P       +      S+ +A +LL+ 
Sbjct: 305 QQRRDVLVKGLREA-GWMVENPKASMYVWA--KIP-------EPYAHLGSLEFAKKLLQD 354

Query: 405 TGICIVPGAGFGQ 417
             + + PG GFG 
Sbjct: 355 AKVSVSPGIGFGD 367

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score = 84.9 bits (211), Expect = 5e-18
 Identities = 83/419 (19%), Positives = 146/419 (34%), Gaps = 129/419 (30%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P+ V + A   L   +G+    YTD  GI  +R  +A+ I  R  +      V+++ GA 
Sbjct: 56  PEPVVEEAVRFLQ--KGEV--KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAK 111

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLP 142
             + +    L++      PG  V++  P +  Y     LA   +  +      SK +   
Sbjct: 112 QALFNAFMALLD------PGDEVIVFSPVWVSYIPQIILAGGTVNVV--ETFMSKNFQPS 163

Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
           + E+E  +         +A++I +P NPTG V  +E ++ +++ A +   ++ +DEVY  
Sbjct: 164 LEEVEGLLVG-----KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS 218

Query: 203 NVYAEGSKFYSF-------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY---- 250
            VY    +F S         +++   G              SK + M   G R GY    
Sbjct: 219 LVY--TDEFTSILDVSEGFDRIVYING-------------FSKSHSM--TGWRVGYLISS 261

Query: 251 SEVINLDPGVKAM--LH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGC 306
            +V        A+  +   + S   C   +A                  Q A    L+  
Sbjct: 262 EKVA------TAVSKIQSHTTS---CINTVA------------------QYAALKALEV- 293

Query: 307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV 366
                  + M              + F   K  V++ L             + G+     
Sbjct: 294 -----DNSYM-------------VQTFKERKNFVVERL-----------KKM-GVKFVEP 323

Query: 367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           +GA Y F +++       +               LLE   + +VPG+ F   PG    R
Sbjct: 324 EGAFYLFFKVRGDDVKFCER--------------LLEEKKVALVPGSAFL-KPG--FVR 365

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 47/234 (20%), Positives = 83/234 (35%), Gaps = 30/234 (12%)

Query: 22  DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL 81
                P  ++   +          +  Y  S   E +R     +  RR        ++I 
Sbjct: 34  QFE-TPKFIQDALKNHTHS-----LNIYPKSAFEESLRAAQRGFFKRRFKIELKENELIS 87

Query: 82  SAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQW 139
           + G+ + + +    ++ D     P +  P P Y +Y  +A   +         +  +K+ 
Sbjct: 88  TLGSREVLFNFPSFVLFDYQN--PTIAYPNPFYQIYEGAAKFIKAKS----LLMPLTKEN 141

Query: 140 G-LPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
              P   L     +         +VI+N P NPTG+ L+ E +   +K A +    L  D
Sbjct: 142 DFTP--SLNEKELQEVD------LVILNSPNNPTGRTLSLEELISWVKLALKHDFILIND 193

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
           E Y + +Y E +   S  +  +  G       L    S SK       GLR G+
Sbjct: 194 ECYSE-IY-ENTPPPSLLEACMLAGNEAFKNVLV-IHSLSKRSSA--PGLRSGF 242

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score = 82.2 bits (204), Expect = 4e-17
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 46/236 (19%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
           P+   +     L+     + G Y             A++   R G   D +   +   G+
Sbjct: 40  PEAPLKALAEALN--DPTTYG-YCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96

Query: 86  SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGL 141
            +G+  +L  L E      P   +L+P   YP Y  +  +A        + +   +    
Sbjct: 97  QEGLAHLLLALTE------PEDLLLLPEVAYPSYFGAARVASLRT----FLIPLREDGLA 146

Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
            +  +   +         + +++  P NPTG V      ++ +  A +  L+L  D  Y 
Sbjct: 147 DLKAVPEGVWR-----EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYV 201

Query: 202 DNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
           D VY    +  S       K+ +VE              S SK Y +   G R G+
Sbjct: 202 DQVY--EGEAPSPLALPGAKERVVE------------LFSLSKSYNLA--GFRLGF 241

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 15/73 (20%)

Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
           ++RA  +A+       +S  P +  MY +   +LP         EG    + +   L+ER
Sbjct: 290 RERALGMAEALK--GVLSLLPPRATMYLWG--RLP---------EGV-DDLEFGLRLVER 335

Query: 405 TGICIVPGAGFGQ 417
            G+ + PG GFG 
Sbjct: 336 -GVALAPGRGFGP 347

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score = 81.0 bits (201), Expect = 1e-16
 Identities = 83/422 (19%), Positives = 148/422 (35%), Gaps = 129/422 (30%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P+ VK+ A+  L   +G++   Y    GI  +R  +A+   R +G     ++ I++ G S
Sbjct: 46  PEHVKEAARRALA--QGKT--KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGS 101

Query: 87  DGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYSASLAEFNMEQIGY--------YL 133
             + ++ + +++      PG  V++  P    YP           E + +          
Sbjct: 102 QALFNLFQAILD------PGDEVIVLSPYWVSYP-----------EMVRFAGGVVVEVET 144

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
              + +      + R+IT        +A+V+ +P NPTG V  KE ++ + + A     +
Sbjct: 145 LPEEGFVPDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFY 199

Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
           L +DE+Y+  +Y    + +S  +V      P  ++ +      +K + M   G R GY  
Sbjct: 200 LVSDEIYEHLLY--EGEHFSPGRV-----APEHTLTVNGA---AKAFAM--TGWRIGYAC 247

Query: 251 --SEVINLDPGVKAML----HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ-AVL 303
              EVI      KAM       S +    P  +A                  Q A    L
Sbjct: 248 GPKEVI------KAMASVSRQ-STT---SPDTIA------------------QWATLEAL 279

Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
                    +     V       E + E +           ++R  ++ +   ++ G+  
Sbjct: 280 TN------QEASRAFV-------EMAREAY-----------RRRRDLLLEGLTAL-GLKA 314

Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
               GA Y                       V  A E L   G+ +VPG  F    G  H
Sbjct: 315 VRPSGAFYVLMDTS---------PIAPD--EVRAA-ERLLEAGVAVVPGTDFA-AFG--H 359

Query: 424 FR 425
            R
Sbjct: 360 VR 361

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score = 80.8 bits (199), Expect = 1e-16
 Identities = 47/410 (11%), Positives = 113/410 (27%), Gaps = 84/410 (20%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEI-----IRRHVAQYISRRDGQPAD 75
           DP        K   +  +       +  ++D   +       +   +            +
Sbjct: 31  DPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATE 90

Query: 76  WQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
            + +++  G++   ++ +  L      +   V+   P Y  Y         E+  Y    
Sbjct: 91  DRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV--------EETTYVRSG 142

Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
             +W       ++          P   ++ +P NP G +      + ++     ++  + 
Sbjct: 143 MYKWEGDAWGFDKK--------GPYIELVTSPNNPDGTIR-----ETVVNRPDDDEAKVI 189

Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN 255
            D  Y    Y   ++       ++          L +F   SK   G  G R G+     
Sbjct: 190 HDFAYYWPHYTPITRRQ--DHDIM----------LFTF---SKIT-GHAGSRIGW----- 228

Query: 256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV 315
                 A++           V   +    + +      + + R   +L+  +     ++ 
Sbjct: 229 ------ALVKDKE-------VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESE 275

Query: 316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ 375
            +           ++ ++ RE       +K R + + +     +  +      A   +  
Sbjct: 276 SE-----------NFFKYGREM------MKNRWEKLREVVKESDAFTLPKYPEAFCNYFG 318

Query: 376 MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
             L +     A A             L R  +    G   G      H R
Sbjct: 319 KSLESYP---AFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKK--HVR 363

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 54/237 (22%), Positives = 86/237 (36%), Gaps = 47/237 (19%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
           P  +    Q  L     ++   Y    G E  ++ +  +  R+     D +D V +  G 
Sbjct: 62  PQGIIDHFQKALT--IPENQK-YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT 118

Query: 86  SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGL 141
            +G+ +V   +I       PG  VL+P P Y  Y A   LA+     +   L+    +  
Sbjct: 119 KNGLVAVPTCVIN------PGDYVLLPDPGYTDYLAGVLLADGKP--VPLNLEP-PHYLP 169

Query: 142 PISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             S+++  I +  K      ++ +  P NPTG   TKE   + I         +  D  Y
Sbjct: 170 DWSKVDSQIIDKTK------LIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAY 223

Query: 201 QDNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
               +   +K  S       K V +E              S SKGY M   G R G+
Sbjct: 224 GAFGF--DAKNPSILASENGKDVAIE------------IYSLSKGYNMS--GFRVGF 264

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
           K R             +     +G +Y +   + P          G   S  +   L++ 
Sbjct: 313 KTRRDRFEAMLAKA-DLPFVHAKGGIYVWL--ETP---------PGY-DSEQFEQFLVQE 359

Query: 405 TGICIVPGAGFGQ 417
             I + PG  FG+
Sbjct: 360 KSILVAPGKPFGE 372

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 54/281 (19%), Positives = 99/281 (35%), Gaps = 58/281 (20%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
           P  VK+     LD      +  Y D+    + +      ++R    PA W  ++   G +
Sbjct: 39  PVSVKRALIDNLD-----CIERYPDADYFHLHQA-----LARHHQVPASW--ILAGNGET 86

Query: 87  DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL 146
           +     +  +   +  ++   +I  P +  Y  +LA+   E   + L E+  W L  + L
Sbjct: 87  E----SIFTVASGLKPRR--AMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAIL 140

Query: 147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA 206
           E  +T      +   + +  P NPTG +  +  +Q I        + L  DE + D  + 
Sbjct: 141 EA-LTP-----DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFID--FI 192

Query: 207 EGSKFY-----SFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK 261
                +         + V          L S    +K Y    GLR GY  ++N D    
Sbjct: 193 PHETGFIPALKDNPHIWV----------LRSL---TKFY-AIPGLRLGY--LVNSDDAAM 236

Query: 262 AMLHK-----SISAMLCPTVLALVSLPQLFDDPRFPDDVKQ 297
           A + +     S++A      LA ++      D  +      
Sbjct: 237 ARMRRQQMPWSVNA------LAALAGEVALQDSAWQQATWH 271

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 73.4 bits (181), Expect = 3e-14
 Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 27/236 (11%)

Query: 22  DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR-DGQPADWQD-V 79
             P  P  +     A L       +  Y  + G+  +R+  A ++ RR DG   D  + +
Sbjct: 41  KHP-TPKVITDALTASLHE-----LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEI 94

Query: 80  ILSAGASDGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDES 136
           +   G+ + + S ++ ++    DG KP ++ P P Y +Y  +  L    +    ++ +  
Sbjct: 95  LPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEI----HFANCP 150

Query: 137 KQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLF 195
                P  +      E  K      +V +  P NP+G VL  +  +++     +    + 
Sbjct: 151 APSFNP--DWRSISEEVWKRT---KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIA 205

Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
           +DE Y + +Y +G+K     +   ++G   +   L  F S SK   +   GLR G+
Sbjct: 206 SDECYSE-IYFDGNKPLGCLQAAAQLGRSRQK--LLMFTSLSKRSNVP--GLRSGF 256

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 22/185 (11%)

Query: 26  FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
            P   + + A+ VL+    +SV  YT + GI  +R  +A ++ + D      ++++++ G
Sbjct: 49  IPRAVLGEIAKEVLEK-EPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG 106

Query: 85  ASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQW 139
            +  +  + ++LI+      PG  V+    + P Y  +L  F           +D     
Sbjct: 107 GTGALDLLGRVLID------PGDVVIT---ENPSYINTLLAFEQLGAKIEGVPVDND--- 154

Query: 140 GLPISELERSITEARKHC-NPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
           G+ +  LE  I E +      + I  I    NP G  ++ E  + +++ A +  L +  D
Sbjct: 155 GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIED 214

Query: 198 EVYQD 202
             Y  
Sbjct: 215 TAYNF 219

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 40/202 (19%), Positives = 78/202 (38%), Gaps = 32/202 (15%)

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
           I            ++L  GAS+    +++L I   +     +LI +P Y  Y  +  +  
Sbjct: 70  IENYLKLKDIG--IVLGNGASE----IIELSISLFEK----ILIIVPSYAEYEINAKKHG 119

Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
           +  +  YLDE+    +   ++   I +         ++I NP NP G ++ KE    ++K
Sbjct: 120 VSVVFSYLDEN--MCIDYEDIISKIDDVDS------VIIGNPNNPNGGLINKEKFIHVLK 171

Query: 186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGEC 244
            A  +K  +  DE + +  +       SF   +      Y     + +    +K +    
Sbjct: 172 LAEEKKKTIIIDEAFIE--FTGDPS-SSFVGEIKN----YSCLFIIRAM---TKFF-AMP 220

Query: 245 GLRGGYSEVINLDPGVKAMLHK 266
           G+R GY   I  +  + A +  
Sbjct: 221 GIRFGYG--ITNNKEIAAKIKA 240

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 56/301 (18%), Positives = 118/301 (39%), Gaps = 51/301 (16%)

Query: 26  FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA-DWQDVILSA 83
           FP  ++ + A+ +++         Y+ + G  ++++ + + + R  G    D  ++I + 
Sbjct: 58  FPRKELAEIAKEIIEK-EYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116

Query: 84  GASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQ 138
           G+   +  + KL ++           ++     P Y  ++  F      +    L++   
Sbjct: 117 GSQQALDLIGKLFLD------DESYCVL---DDPAYLGAINAFRQYLANFVVVPLEDD-- 165

Query: 139 WGLPISELERSITEAR---KHCNPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFL 194
            G+ ++ LER ++E     K    + I V+ N  NP G   + E  + +++ A +  LF+
Sbjct: 166 -GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFI 224

Query: 195 FADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY---- 250
             D+ Y    Y EG           ++G P + + L +F   SK      GLR G     
Sbjct: 225 VEDDPYGALRY-EGETVDPIF----KIGGPERVVLLNTF---SKVLAP--GLRIGMVAGS 274

Query: 251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDV-------KQRAQAVL 303
            E I      K +  K  SA LC   +      +  +     + +       +++   +L
Sbjct: 275 KEFIR-----KIVQAKQ-SADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVML 328

Query: 304 D 304
           +
Sbjct: 329 N 329

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 55/229 (24%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
            D +++     L+      +  Y +     + +      +++R+    +   ++++ G +
Sbjct: 30  KDHLEKHLVENLN-----CIRHYPEPDAGTLRQM-----LAKRNSVDNNA--ILVTNGPT 77

Query: 87  DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL 146
                    + +   G +   LI IP +  Y  +   +  E   Y  +E         ++
Sbjct: 78  A----AFYQIAQAFRGSR--SLIAIPSFAEYEDACRMYEHEVCFYPSNE---------DI 122

Query: 147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA 206
             +        N     + NP NP G++L +  I  ++   H +  F+  D+ Y    + 
Sbjct: 123 GEADFS-----NMDFCWLCNPNNPDGRLLQRTEILRLLN-DHPDTTFVL-DQSYVS--FT 173

Query: 207 EGSKFYS-----FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
                        K +++          + SF   S  Y G  GLR GY
Sbjct: 174 TEEVIRPADIKGRKNLVM----------VYSF---SHAY-GIPGLRIGY 208

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score = 66.1 bits (162), Expect = 8e-12
 Identities = 32/185 (17%), Positives = 78/185 (42%), Gaps = 22/185 (11%)

Query: 26  FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
           FP + ++     +++         Y  + G   +R  + +++ +R    +   D+++++G
Sbjct: 91  FPKEIIRDILVEIMEK-YADKALQYGTTKGFTPLRETLMKWLGKR-YGISQDNDIMITSG 148

Query: 85  ASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQW 139
           +   +  + ++ +       PG  V++   + P Y A+L  FN  +  Y    LD+    
Sbjct: 149 SQQALDLIGRVFLN------PGDIVVV---EAPTYLAALQAFNFYEPQYIQIPLDDE--- 196

Query: 140 GLPISELERSITEARKHCNPRAIVIINP--GNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
           G+ +  LE  + E +       +V   P   NP G  + ++  + +++ A      +  D
Sbjct: 197 GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVED 256

Query: 198 EVYQD 202
           + Y +
Sbjct: 257 DPYGE 261

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score = 59.9 bits (146), Expect = 8e-10
 Identities = 36/184 (19%), Positives = 78/184 (42%), Gaps = 30/184 (16%)

Query: 26  FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
           FP ++  + A  +L   +G+    Y+ + G   +R  VA++I          ++V+++ G
Sbjct: 47  FPKEEAAEAAARILRE-KGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLITTG 99

Query: 85  ASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQW 139
           +   +  V K+ ++       G  VL+   + P Y  ++  F ++   +      E    
Sbjct: 100 SQQALDLVGKVFLD------EGSPVLL---EAPSYMGAIQAFRLQGPRFLTVPAGEE--- 147

Query: 140 GLPISELERSITEARKHCNPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
           G  +  LE  +   R    PR + +I +  NPTG +      + +++      L +  D+
Sbjct: 148 GPDLDALEEVLKRER----PRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDD 203

Query: 199 VYQD 202
            Y++
Sbjct: 204 AYRE 207

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 19/148 (12%)

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAE 123
           +      PA  + V+L  G+ + I  +            PG  V+ P+P + +Y+ S   
Sbjct: 76  LKEVMQVPAGME-VLLGNGSDEIISMLALAAAR------PGAKVMAPVPGFVMYAMSAQF 128

Query: 124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI 183
             +E +G  L     + L    +  ++ E +    P  + +  P NPTG +    +++ I
Sbjct: 129 AGLEFVGVPLRAD--FTLDRGAMLAAMAEHQ----PAIVYLAYPNNPTGNLFDAADMEAI 182

Query: 184 IKFA--HREKLFLFADEVYQDNVYAEGS 209
           ++ A     +  +  DE YQ   +A+ S
Sbjct: 183 VRAAQGSVCRSLVVVDEAYQP--FAQES 208

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 66/307 (21%)

Query: 18  PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP---- 73
           P +F        V+            +    Y+ S GI  +   + Q   +    P    
Sbjct: 43  PNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHY 102

Query: 74  ---ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQ 128
                  D+ +++G+  G+  V +++I       PG  VL+     P YS +L   +   
Sbjct: 103 PPSQGQMDLCVTSGSQQGLCKVFEMIIN------PGDNVLL---DEPAYSGTLQSLHPLG 153

Query: 129 IGYY---LDESKQWGLPISELERSITE-------ARKHCNPRAIVII-NPGNPTGQVLTK 177
                   DES   G+    L   ++          +   P+ +  + N  NPTG  LT 
Sbjct: 154 CNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTS 210

Query: 178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME-------L 230
           E  ++I + A +    +  D+ Y    + +                 + SM+        
Sbjct: 211 ERKKEIYELARKYDFLIIEDDPYYFLQFNK------------FRVPTFLSMDVDGRVIRA 258

Query: 231 ASFMSCSKGYMGECGLRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLF 286
            SF   SK      GLR G+      +I      + +LH    + L P+    + + QL 
Sbjct: 259 DSF---SKIISS--GLRIGFLTGPKPLIE-----RVILHIQ-VSTLHPSTFNQLMISQLL 307

Query: 287 DDPRFPD 293
            +     
Sbjct: 308 HEWGEEG 314

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 58/414 (14%), Positives = 109/414 (26%), Gaps = 126/414 (30%)

Query: 173 QVLTKENIQDIIKFAHREK--LFLFAD-EVYQDNVYAEGSKF--------YSF--KKVLV 219
            +L+KE I  II         L LF      Q+ +     KF        Y F    +  
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKT 100

Query: 220 EMGEPYKSMELASFMSC-----------SKGYM--GEC--GLRGGYSEVINLDPGVKAML 264
           E  +P  SM    ++             +K  +   +    LR     ++ L P    ++
Sbjct: 101 EQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLI 155

Query: 265 H------KSISAMLCPTVLALVSLPQLFDDPRF---------PDDVKQRAQAVLDGCRGQ 309
                  K+    +   V     +    D   F         P+ V +  Q +L   +  
Sbjct: 156 DGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--QID 210

Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSR---EKQS-----VLDSLKQRAKMVADTFNSIEGM 361
               +  D   N          +  R    K       VL ++  +     + FN    +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFN----L 264

Query: 362 SC------------NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL-YAFELLERTGIC 408
           SC            + +  A      +   +  +   + +      L    + L R  + 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 409 IVP------GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGI 462
             P               T+       W+H     +           +  +   LE    
Sbjct: 325 TNPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTI--------IESSLNVLE---- 367

Query: 463 CIVPGAGFGQVPGTY--HFRT-TILPQ----PEKLKAML--EKFREFHEEFLAK 507
                      P  Y   F   ++ P     P  L +++  +  +      + K
Sbjct: 368 -----------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLA 122
            ++  G   +   V++S GA +GI+ +++   E      PG   +L   P Y +YS S  
Sbjct: 67  YAQYAGVKPEQ--VLVSRGADEGIELLIRAFCE------PGKDAILYCPPTYGMYSVSAE 118

Query: 123 EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD 182
              +E       ++  W L +  +   +         + + + +P NPTGQ++  ++ + 
Sbjct: 119 TIGVECRTVPTLDN--WQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRT 170

Query: 183 IIKFAHREKLFLFADEVYQD 202
           +++   R K  + ADE Y +
Sbjct: 171 LLE-LTRGKAIVVADEAYIE 189

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 49/316 (15%), Positives = 92/316 (29%), Gaps = 60/316 (18%)

Query: 18  PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ 77
            +  D     D +            G    +Y    GI  IR   A+ +    G PAD  
Sbjct: 44  AEQLDLSN--DLLSLPGGDFRTK-DGVDCRNYGGLLGIADIRELWAEAL----GLPAD-- 94

Query: 78  DVILSAGASDGIKS--VLKLLIEDVDG------KKPGVLIPIPQYPLYSASLAEFNMEQI 129
            V+   G+S  I    +        +        +  V    P  P Y            
Sbjct: 95  LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPV-PGYDRHFTITEHFGF 153

Query: 130 GYY---LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF 186
                 + +    G  +  +   + + +         +   GNPTG   +++  +++ + 
Sbjct: 154 EMINVPMTDE---GPDMGVVRELVKDPQVKG---MWTVPVFGNPTGVTFSEQTCRELAEM 207

Query: 187 AHREKLFLFADEVYQDNVYA------EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
           +     F     +  DN YA      E    ++  +     G P +   ++S    SK  
Sbjct: 208 STAAPDFR----IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSST---SKIT 260

Query: 241 MGECGLRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD-------- 288
               G    +     E I          H +    + P  L  ++  Q F D        
Sbjct: 261 HA--GSGVSFFASSKENIE-----WYASHAN-VRGIGPNKLNQLAHAQFFGDVAGLKAHM 312

Query: 289 PRFPDDVKQRAQAVLD 304
            +    +  + + VL+
Sbjct: 313 LKHAASLAPKFERVLE 328

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 49/312 (15%)

Query: 18  PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSP-GIEIIRRHVAQY-------ISRR 69
              FD     + +     A      G  + +Y     G+   R   A Y       +   
Sbjct: 37  DADFD---LSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVW 93

Query: 70  DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
           +    + Q ++L+     G++      +     + P +++ +P Y  +   L     E +
Sbjct: 94  NNSSLELQGLVLTFALLHGVRGSTGPWLS----QTPKMIVTVPGYDRHFLLLQTLGFELL 149

Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIK-FA 187
              +      G  +  +ER         + + I+ +    NP G+ ++ E  + +    A
Sbjct: 150 TVDMQSD---GPDVDAVERLA---GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQA 203

Query: 188 HREKLFLFADEVYQDNVYAEGSK--FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG 245
                 +FAD+ Y+ +   E  +    +F  +  + G P ++   AS    SK      G
Sbjct: 204 AAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAST---SKITFA--G 258

Query: 246 LRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD---------PRFP 292
              G+     + I          +   +  + P  +      +   +             
Sbjct: 259 AGLGFVASSEDNIR-----WLSKYLG-AQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHA 312

Query: 293 DDVKQRAQAVLD 304
             +  + +AV +
Sbjct: 313 AIIAPKFRAVDE 324

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 30/185 (16%)

Query: 106 GVLIPIPQY-PLYSA------SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN 158
            VLI  P Y P   +       L   ++       +E+  + +   +LE  I E     +
Sbjct: 115 AVLINSPVYPPFARSVRLNNRKLVSNSL------KEENGLFQIDFEQLENDIVEN----D 164

Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
            +  ++ NP NP G+V  +E ++ I     +  + L +DE++QD     G +  SF  V 
Sbjct: 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTL-FGHEHVSFNTV- 222

Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
                 +K        S +K + +   G +  Y   I  +P + A              +
Sbjct: 223 ---SPDFKDF-ALVLSSATKTFNIA--GTKNSY--AIIENPTLCAQFKHQQLVNNHHEVS 274

Query: 276 VLALV 280
            L  +
Sbjct: 275 SLGYI 279

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 28/222 (12%)

Query: 62  VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQY-PLYSAS 120
            A++ + R G  A  + +        G+   +             V++P P Y P +   
Sbjct: 67  TAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSK----VIVPTPAYPPFFHL- 121

Query: 121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
                  +    +      G+ + ++E+           R+I++ NP NP G V   E +
Sbjct: 122 -LSATQREG---IFIDATGGINLHDVEKGFQA-----GARSILLCNPYNPLGMVFAPEWL 172

Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
            ++   AHR    +  DE++   V+    +      V     +   S+   +  + SK +
Sbjct: 173 NELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGV----SDTAASV-CITITAPSKAW 225

Query: 241 -MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-PTVLALV 280
            +   GL+     +I  +P       +    +    + L L+
Sbjct: 226 NIA--GLKCAQ--IIFSNPSDAEHWQQLSPVIKDGASTLGLI 263

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 31/185 (16%), Positives = 74/185 (40%), Gaps = 31/185 (16%)

Query: 106 GVLIPIPQY-PLYSA------SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN 158
            ++I  P Y P  S        L    +++      E+  + +   ++E  I       +
Sbjct: 116 KIMIQEPVYSPFNSVVKNNNRELIISPLQK-----LENGNYIMDYEDIENKIK------D 164

Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
            +  ++ NP NP G+V TK+ ++ +     +  + + +DE++ D +  +  K      + 
Sbjct: 165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL-KKHKHIPMASI- 222

Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
               + ++     + M+ +K + +   GL+  Y  V+  D     +L  + + +      
Sbjct: 223 ---SKEFEKN-TITCMAPTKTFNIA--GLQSSY--VVLPDEKDYKLLDDAFTRIDIKRNN 274

Query: 276 VLALV 280
             +LV
Sbjct: 275 CFSLV 279

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 38/188 (20%)

Query: 106 GVLIPIPQY-PLYSA------SLAEFNMEQI--GYYLDESKQWGLPISELERSITEARKH 156
           GV+I  P Y   Y A      ++    +E+   G++ D        + +LE  + +    
Sbjct: 113 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCD--------MGKLEAVLAKP--- 161

Query: 157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK 216
              + +++ +P NPTG+V T + ++ +     R  + + +DE++ D V+        +  
Sbjct: 162 -ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW-GEQPHIPWSN 219

Query: 217 VLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-- 273
           V           + A   S SK + +    L G Y   I  +   +     ++       
Sbjct: 220 VARG--------DWALLTSGSKSFNIP--ALTGAY--GIIENSSSRDAYLSALKGRDGLS 267

Query: 274 -PTVLALV 280
            P+VLAL 
Sbjct: 268 SPSVLALT 275

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 30/185 (16%)

Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDESK------QWGLPISELERSITEARKHCN 158
            VLI  P Y P         N     + L E+       ++ +   +LE+ I +     N
Sbjct: 145 AVLINSPVYYPFART--IRLN----DHRLVENSLQIINGRFEIDFEQLEKDIIDN----N 194

Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
            +  ++ +P NP G+V   +++  I +   +  + L +DE++QD     G+  +S   + 
Sbjct: 195 VKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL-FGNTHHSLNTL- 252

Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISA--MLCPT 275
               +           S +K + +   G +  +   I  +  ++        A       
Sbjct: 253 ----DASYKDFTIILSSATKTFNIA--GTKNSF--AIIQNESLRRKFQYRQLANNQHEVP 304

Query: 276 VLALV 280
            + ++
Sbjct: 305 TVGMI 309

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 30/185 (16%)

Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDESK------QWGLPISELERSITEARKHCN 158
           GV+I  P Y P + A   +         + E +       + +   +LE+   +     N
Sbjct: 115 GVIIITPVYYPFFMA--IKNQ----ERKIIECELLEKDGYYTIDFQKLEKLSKDK----N 164

Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
            +A++  +P NP G+V  K+ +Q I     +  L L++DE++ D +   G +   F+ + 
Sbjct: 165 NKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHTVFQSI- 222

Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
               +   + +  +F + SK + +   G+      +I  +P ++    KS  A      T
Sbjct: 223 ----DEQLADKTITFTAPSKTFNIA--GMGMSN--IIIKNPDIRERFTKSRDATSGMPFT 274

Query: 276 VLALV 280
            L   
Sbjct: 275 TLGYK 279

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 30/185 (16%)

Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDESK------QWGLPISELERSITEARKHCN 158
            +L+  P Y   YS    E N    G  +  S       ++ +  ++LE  +       +
Sbjct: 111 QILVQEPVYNMFYSV--IEGN----GRRVISSDLIYENSKYSVNWADLEEKLATP----S 160

Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
            R +V  NP NP G   ++E ++ I +   + ++ L +DE++ D V            V 
Sbjct: 161 VRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVL-TDEDITPAFTV- 218

Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISA--MLCPT 275
               +      + S +S SK + +    L       I  +P ++A   +S     +  P 
Sbjct: 219 ----DWDAKNWVVSLISPSKTFNLA--ALHAAC--AIIPNPDLRARAEESFFLAGIGEPN 270

Query: 276 VLALV 280
           +LA+ 
Sbjct: 271 LLAIP 275

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 35/190 (18%), Positives = 74/190 (38%), Gaps = 30/190 (15%)

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYSAS 120
           ++      A    ++L+AG+S+GI++ ++              ++IP         + A 
Sbjct: 60  LAAHHQVEAPS--ILLTAGSSEGIRAAIEAYAS------LEAQLVIPELTYGDGEHF-AK 110

Query: 121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
           +A   + ++         W   I  L+ ++     +  P  + ++NP NPTG +   + I
Sbjct: 111 IAGMKVTKV----KMLDNWAFDIEGLKAAVAA---YSGPSIVYLVNPNNPTGTITPADVI 163

Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
           +  I  +         DE Y +  +    +F S   ++ +  E      +    + SK +
Sbjct: 164 EPWIA-SKPANTMFIVDEAYAE--FVNDPRFRSISPMITQGAEN-----IILLKTFSKIH 215

Query: 241 MGECGLRGGY 250
               G+R GY
Sbjct: 216 -AMAGMRVGY 224

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 42/306 (13%), Positives = 89/306 (29%), Gaps = 39/306 (12%)

Query: 18  PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW- 76
            +  D       +  +         G  V +Y    GI  IR+  A  +     Q     
Sbjct: 45  SEQLDFADELLALPGKGDFKAA--DGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGD 102

Query: 77  ---QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL 133
               +++    +   I      +      +    + P+P Y  + +    F  E I   +
Sbjct: 103 ASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPM 162

Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKL 192
           +E    G  +  +E  +   +     + + ++    NPTG  +T++  + +         
Sbjct: 163 NED---GPDMDAVEELVKNPQ----VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD 215

Query: 193 FLFA-DEVYQD-NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
           F    D  Y    +  E  +      +    G P +     S    SK  +   G    +
Sbjct: 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTST---SKITLA--GAGVSF 270

Query: 251 ----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD--------PRFPDDVKQR 298
               +E            H      + P  +  ++  + F D         +    +  +
Sbjct: 271 FLTSAENRK-----WYTGHAG-IRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPK 324

Query: 299 AQAVLD 304
              VL+
Sbjct: 325 FNKVLE 330

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 62/204 (30%)

Query: 66  ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYS-- 118
           ++       +   +I +AG  + I+ + ++L++           ++  P   QY   +  
Sbjct: 76  VADFYQLEEEE--LIFTAGVDELIELLTRVLLD------TTTNTVMATPTFVQYRQNALI 127

Query: 119 --ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT 176
             A + E  +          +     +  +  +I E         + I NP NPTG  + 
Sbjct: 128 EGAEVREIPLL---------QDGEHDLEGMLNAIDE-----KTTIVWICNPNNPTGNYIE 173

Query: 177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS---- 232
             +IQ  +       + +  DE Y +  Y                 +P K  +L      
Sbjct: 174 LADIQAFLD-RVPSDVLVVLDEAYIE--YVT--------------PQPEKHEKLVRTYKN 216

Query: 233 ------FMSCSKGYMGECGLRGGY 250
                 F   SK Y G    R GY
Sbjct: 217 LIITRTF---SKIY-GLASARVGY 236

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 17/182 (9%)

Query: 27  PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
            + +     A +D      +  Y +   +E+ R  +A YI+++ G      ++  + G S
Sbjct: 45  SEALVADLVATVDKI-ATELNRYPERDAVEL-RDELAAYITKQTGVAVTRDNLWAANG-S 101

Query: 87  DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL 146
           + I   L+ L++   G     L   P Y ++       + E I         + + +   
Sbjct: 102 NEI---LQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA--DFRIDMDVA 156

Query: 147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA 206
              I   +    P  + +  P NPTG V + +   D+ +  +     +  DE Y +  ++
Sbjct: 157 LEEIRAKQ----PDIVFVTTPNNPTGDVTSLD---DVERIINVAPGIVIVDEAYAE--FS 207

Query: 207 EG 208
             
Sbjct: 208 PS 209

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 23/169 (13%)

Query: 93  LKLLIEDVDGKKPGVLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSI 150
           +  LI +       VL     +  Y    S     +     + + +             +
Sbjct: 115 IHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNEL 174

Query: 151 TEARKHCNPRAIVIINPG--NPTGQVLTKE---NIQDIIK---FAHREKLFLFADEVYQD 202
              +       +VI N    NPTG  +  +   +I + +K      R  + +  D  Y D
Sbjct: 175 AAKQ----TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLD 230

Query: 203 NVYAEGS--KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
             Y+         F K    + +    +      S SKG     G R G
Sbjct: 231 --YSGEKDEVRAFFNK-FSHLPK---EILTCVCYSLSKG-FTMYGQRVG 272

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 28/169 (16%)

Query: 34  AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
              V       ++  Y D    E +   +  Y+        +   V +  G +D    ++
Sbjct: 38  VDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTDFLSKNN---VSVGNG-ADE---II 89

Query: 94  KLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA 153
            +++   D      +   P Y  Y         + +   L +           +  I E 
Sbjct: 90  YVMMLMFDR----SVFFPPTYSCYRIFAKAVGAKFLEVPLTK-----------DLRIPEV 134

Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
                   + I NP NPTG V  +E I+ I+K       F+  DE Y +
Sbjct: 135 NVG-EGDVVFIPNPNNPTGHVFEREEIERILKTG----AFVALDEAYYE 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	509
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.98
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.97
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.97
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.97
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.97
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.97
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.97
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.97
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.97
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.97
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.97
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.96
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.96
1svv_A	359	Threonine aldolase; structural genomics, structura	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.96
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.96
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.96
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.96
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.96
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.96
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.96
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.95
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.95
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.95
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.95
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.95
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.95
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.95
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.95
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.95
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.95
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.95
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.95
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.95
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.95
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.95
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.95
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.94
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.94
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.94
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.94
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.94
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.94
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.94
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.94
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.94
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.94
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.94
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.94
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.94
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.93
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.93
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.93
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.93
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.93
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.93
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.93
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.93
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.93
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.93
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.93
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.93
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.92
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.92
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.92
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.92
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.92
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.92
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.92
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.92
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.92
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.92
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.92
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.92
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.92
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.92
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.92
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.91
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.91
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.91
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.91
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.91
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.91
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.91
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.91
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.91
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.91
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.9
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.9
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.9
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.9
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.89
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.89
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.88
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.88
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.88
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.88
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.87
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.87
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.86
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.86
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.85
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.84
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.84
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.84
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.74
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.84
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.83
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.83
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.83
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.82
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.8
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.76
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.76
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.74
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.73
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.72
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.67
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.65
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.57
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.53
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.52
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.28
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	88.34
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	82.51

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-54  Score=462.65  Aligned_cols=417  Identities=56%  Similarity=0.991  Sum_probs=357.4

Q ss_pred             chHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcC-CCCCCCcEEEe
Q psy13922          4 VFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDG-QPADWQDVILS   82 (509)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g-~~~~~~~i~~t   82 (509)
                      +.+++|+++.+++.|..++.+.||..+++++.+++....+.....|+++.|.+++|+++++++.+++| +++++++|++|
T Consensus        80 ~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t  159 (498)
T 3ihj_A           80 PITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLT  159 (498)
T ss_dssp             CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEE
T ss_pred             cchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEc
Confidence            67899999999999999999999999999999999885443556699999999999999999998884 88899999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEE
Q psy13922         83 AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAI  162 (509)
Q Consensus        83 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~i  162 (509)
                      +|+++++..++++++++||++++.|+++.|+|..|...++..|++++.++++++++|.+|++.|++.+++.....++++|
T Consensus       160 ~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i  239 (498)
T 3ihj_A          160 TGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVL  239 (498)
T ss_dssp             SSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEE
Confidence            99999999999999988743345999999999999999999999999999998888999999999999874222248999


Q ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCC-CCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~  241 (509)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.++++..+.++.++..+++..+ +..++|+++||||.++
T Consensus       240 ~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  319 (498)
T 3ihj_A          240 CIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM  319 (498)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT
T ss_pred             EEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc
Confidence            999999999999999999999999999999999999999999976546778887766543221 1345899999999996


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                      |++|+|+||++++++++++++.+.+..+...+++.+                                  +|.++..+++
T Consensus       320 G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~----------------------------------~q~a~~~~l~  365 (498)
T 3ihj_A          320 GECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVS----------------------------------GQAAMDIVVN  365 (498)
T ss_dssp             CCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHH----------------------------------HHHHHHHHTC
T ss_pred             cCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHH----------------------------------HHHHHHHHhc
Confidence            689999999986567999999998887766777887                                  7888888888


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                      +++.+++.|+.+.++.+++++.++++++.+.+.|+++||+++.++++++|+|+++.+|..........|+.+++.++.++
T Consensus       366 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~l  445 (498)
T 3ihj_A          366 PPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKL  445 (498)
T ss_dssp             CCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHH
Confidence            77777888999988899999999999999999999999999999999999999998888776666777887677667899


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |+++||.++||+.|+..                                               ++..        +||+
T Consensus       446 l~~~gI~v~pG~~f~~~-----------------------------------------------~~~~--------~~Ri  470 (498)
T 3ihj_A          446 LEETGICVVPGSGFGQR-----------------------------------------------EGTY--------HFRM  470 (498)
T ss_dssp             HHHHCBCCEEGGGTCCC-----------------------------------------------TTCC--------BEEE
T ss_pred             HHHCCEEEEeCcccCCC-----------------------------------------------CCCC--------EEEE
Confidence            99999999999988762                                               2323        9999


Q ss_pred             EeecChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        482 TILPQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       482 s~~~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                      +++.++++|++++++|+++++++++||+
T Consensus       471 s~~~~~e~l~~~i~~L~~~~~~~~~~~~  498 (498)
T 3ihj_A          471 TILPPVEKLKTVLQKVKDFHINFLEKYA  498 (498)
T ss_dssp             ECCSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EeCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999996

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=2.8e-52  Score=445.11  Aligned_cols=413  Identities=47%  Similarity=0.831  Sum_probs=359.9

Q ss_pred             chHHHHHHHHhhcCCCCCCCCC----CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE
Q psy13922          4 VFSLSLQVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV   79 (509)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~----~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i   79 (509)
                      +++++|++++++..|+.++.+.    +|..+++++.+.+....+.....|++..|.+++|+++++++.+++|.++++++|
T Consensus        81 p~~~~~~~~~~~~~p~~i~~~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i  160 (500)
T 3tcm_A           81 PVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDI  160 (500)
T ss_dssp             CCHHHHHHHHHHHSGGGGGCTTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGE
T ss_pred             CCcHHHHHHHhhcCcccccCCCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccE
Confidence            5678999999999999998887    899999999888887544355669999999999999999999999988999999


Q ss_pred             EEeCCHHHHHHHHHHHhh-cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-C
Q psy13922         80 ILSAGASDGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-C  157 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~  157 (509)
                      ++|+|+++++..+++.++ ++||    .|+++.|+|..+...++..|++++.++++++.+|.+|++.|++.+++.... .
T Consensus       161 ~~t~G~~~al~~~~~~l~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  236 (500)
T 3tcm_A          161 FLTDGASPGVHLMMQLLIRNEKD----GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGI  236 (500)
T ss_dssp             EEESSSHHHHHHHHHHHCCSTTE----EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTC
T ss_pred             EEcCCHHHHHHHHHHHHcCCCCC----EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCC
Confidence            999999999999999998 7888    999999999999999999999999999998888999999999999874322 3


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.++++..+.++..+..+++...++.++++++|+|
T Consensus       237 ~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S  316 (500)
T 3tcm_A          237 NVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVS  316 (500)
T ss_dssp             EEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESS
T ss_pred             CceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCC
Confidence            58899999999999999999999999999999999999999999999976556778887777764433355689999999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      |.|+|++|+|+||+++.+.++++++.+.+..+...+++.+                                  +|.++.
T Consensus       317 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------------~q~~~~  362 (500)
T 3tcm_A          317 KGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNIT----------------------------------GQILAS  362 (500)
T ss_dssp             STTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCCCCHH----------------------------------HHHHHH
T ss_pred             ccCCCCCccceEEEEEeCCCHHHHHHHHHHHhcccCCCHH----------------------------------HHHHHH
Confidence            9985689999999984334899999998877766777777                                  677777


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .++++.+.+++.|+.+.++++++++.++++++.+.+.|+++||+.+.++++++|+|+++.+|..........|..++..+
T Consensus       363 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~  442 (500)
T 3tcm_A          363 LVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFY  442 (500)
T ss_dssp             HHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHH
T ss_pred             HHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHH
Confidence            77766555677788888889999999999999999999999999999999999999988888876665566777777777


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +.++|+++||.++||+.|+..                                               ++..        
T Consensus       443 ~~~ll~~~gI~v~pg~~f~~~-----------------------------------------------~g~~--------  467 (500)
T 3tcm_A          443 ALRLLESTGIVVVPGSGFGQV-----------------------------------------------PGTW--------  467 (500)
T ss_dssp             HHHHHHHHCEECEESTTTCCC-----------------------------------------------TTCC--------
T ss_pred             HHHHHHHCCEEEEeCcccCCC-----------------------------------------------CCCC--------
Confidence            789999999999999988862                                               2333        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                      +||++++.++++|++++++|+++++++.++|+
T Consensus       468 ~iRis~~~~~e~i~~~i~~l~~~~~~~~~~~~  499 (500)
T 3tcm_A          468 HFRCTILPQEDKIPAVISRFTVFHEAFMSEYR  499 (500)
T ss_dssp             BEEEESCSCTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999996

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=1.6e-43  Score=364.78  Aligned_cols=342  Identities=21%  Similarity=0.352  Sum_probs=280.3

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|++  |+.+.+++.+.+..   .. .+|++..|.+++|+++++++...+|+++++++|++|+|+++++.+++++++++
T Consensus        39 ~~~~~~~~~~v~~a~~~~~~~---~~-~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~  114 (385)
T 1b5p_A           39 GEPDFDTPEHVKEAARRALAQ---GK-TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDP  114 (385)
T ss_dssp             SSCSSCCCHHHHHHHHHHHHT---TC-CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---CC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCC
Confidence            55554  67899999888876   23 35988889999999999999998898888999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|..+...++..|++++.++.+++.+|.+|++.|++.+++     ++++|++++||||||.++|.++
T Consensus       115 gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~NPtG~~~~~~~  185 (385)
T 1b5p_A          115 GD----EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKEV  185 (385)
T ss_dssp             TC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHH
T ss_pred             CC----EEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC-----CCEEEEEeCCCCCCCCCcCHHH
Confidence            88    99999999999999999999999999998655688999999998876     7899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|++||+||+|.++.+++  .+.++.++.+        .++++++||||.+ |++|+|+||++   .+++
T Consensus       186 l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~--------~~~i~~~s~SK~~-~~~G~RiG~~~---~~~~  251 (385)
T 1b5p_A          186 LEALARLAVEHDFYLVSDEIYEHLLYEG--EHFSPGRVAP--------EHTLTVNGAAKAF-AMTGWRIGYAC---GPKE  251 (385)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCGGGTCT--------TTEEEEEESTTTT-TCGGGCCEEEE---CCHH
T ss_pred             HHHHHHHHHHcCCEEEEEccchhcccCC--CCCCHHHcCC--------CCEEEEEechhhc-CCcccceEEEE---eCHH
Confidence            9999999999999999999999998864  3344443311        2489999999999 79999999998   7899


Q ss_pred             HHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+...... ..+++.+                                  .|.++..+++.       .+...++++
T Consensus       252 ~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~-------~~~~~~~~~  290 (385)
T 1b5p_A          252 VIKAMASVSRQSTTSPDTI----------------------------------AQWATLEALTN-------QEASRAFVE  290 (385)
T ss_dssp             HHHHHHHHHHTTTCSCCHH----------------------------------HHHHHHHHHHC-------HHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCCHH----------------------------------HHHHHHHHHhC-------CCcchHHHH
Confidence            99999876653 3456666                                  44444333320       000234578


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|+++ |+.+.++++++|+|++++.          .|. +..++...++ ++||.++||..|+. 
T Consensus       291 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~----------~~~-~~~~l~~~l~-~~gv~v~~g~~f~~-  356 (385)
T 1b5p_A          291 MAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSP----------IAP-DEVRAAERLL-EAGVAVVPGTDFAA-  356 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTT----------TCS-SHHHHHHHHH-HTTEECEESGGGTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCC----------CCC-CHHHHHHHHH-HCCeEEecccccCC-
Confidence            88999999999999999998 8888889999999987741          122 3445555555 88999999987754 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     ++          ++|||++.++++|++++++|+
T Consensus       357 -----------------------------------------------~~----------~iRis~~~~~~~i~~~l~~l~  379 (385)
T 1b5p_A          357 -----------------------------------------------FG----------HVRLSYATSEENLRKALERFA  379 (385)
T ss_dssp             -----------------------------------------------TT----------EEEEECCSCHHHHHHHHHHGG
T ss_pred             -----------------------------------------------CC----------eEEEEecCCHHHHHHHHHHHH
Confidence                                                           33          899999999999999999998


Q ss_pred             HHHH
Q psy13922        499 EFHE  502 (509)
Q Consensus       499 ~~~~  502 (509)
                      ++++
T Consensus       380 ~~l~  383 (385)
T 1b5p_A          380 RVLG  383 (385)
T ss_dssp             GGC-
T ss_pred             HHHh
Confidence            8764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=4e-43  Score=365.55  Aligned_cols=380  Identities=19%  Similarity=0.249  Sum_probs=299.3

Q ss_pred             hHHHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-C
Q psy13922          5 FSLSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-Q   77 (509)
Q Consensus         5 ~~~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~   77 (509)
                      .+.+++++.....+..+    |.|.+  |+.+++++.+.+....  ...+|++..|..++|+++++++++.+|+++++ +
T Consensus        15 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~   92 (422)
T 3fvs_A           15 YNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLR   92 (422)
T ss_dssp             CCHHHHHHHHHHTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             ccHHHHHHHHhhcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCC--ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Confidence            35678888877766654    66665  6799999999988721  24569998899999999999999999988888 6


Q ss_pred             cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC----------CCCCCCCHHHHH
Q psy13922         78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE----------SKQWGLPISELE  147 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~L~  147 (509)
                      +|++|+|+++++..++++++++||    +|+++.|+|.++...++..|.+++.++.++          ..+|.+|++.|+
T Consensus        93 ~i~~~~g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~  168 (422)
T 3fvs_A           93 NVLVTVGGYGALFTAFQALVDEGD----EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELA  168 (422)
T ss_dssp             HEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHH
T ss_pred             cEEEECChHHHHHHHHHHHcCCCC----EEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHH
Confidence            999999999999999999999988    999999999999999999999999999876          236779999999


Q ss_pred             HHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCC
Q psy13922        148 RSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS  227 (509)
Q Consensus       148 ~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (509)
                      +.+++     ++++|++++||||||.++|++++++|+++|+++|+++|+||+|.++.+++. .+.++.++...      .
T Consensus       169 ~~~~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~------~  236 (422)
T 3fvs_A          169 GKFTS-----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLPGM------W  236 (422)
T ss_dssp             TTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTTT------G
T ss_pred             hhcCC-----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCChhhcccc------c
Confidence            98876     799999999999999999999999999999999999999999999988753 33444333211      2


Q ss_pred             ceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcc
Q psy13922        228 MELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGC  306 (509)
Q Consensus       228 ~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (509)
                      .+++++.|+||.+ |++|+|+||++   .++++++.+..... ..++.+.+                             
T Consensus       237 ~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  283 (422)
T 3fvs_A          237 ERTLTIGSAGKTF-SATGWKVGWVL---GPDHIMKHLRTVHQNSVFHCPTQ-----------------------------  283 (422)
T ss_dssp             GGEEEEEEHHHHH-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTCCCCHH-----------------------------
T ss_pred             CcEEEEecchhcc-CCccceEEEEE---eCHHHHHHHHHHHhhccCCCCcH-----------------------------
Confidence            3589999999999 79999999998   79999999887655 34456666                             


Q ss_pred             cCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHH
Q psy13922        307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKA  386 (509)
Q Consensus       307 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~  386 (509)
                           .+.++..+++...   ..+..+.++++++++.++++++.+.+.|+++ |+.+..+.+++|+|+++....      
T Consensus       284 -----~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------  348 (422)
T 3fvs_A          284 -----SQAAVAESFEREQ---LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFK------  348 (422)
T ss_dssp             -----HHHHHHHHHHHHH---HTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHH------
T ss_pred             -----HHHHHHHHHhhcc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhc------
Confidence                 3333333322000   0000022347888999999999999999998 899888999999998774211      


Q ss_pred             hhcCCCC---------cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhh
Q psy13922        387 KAEGKCP---------SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESL  457 (509)
Q Consensus       387 ~~~g~~~---------~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (509)
                        .+..+         +.+++..+++++||.+.||..|+....                                     
T Consensus       349 --~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~-------------------------------------  389 (422)
T 3fvs_A          349 --RKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPH-------------------------------------  389 (422)
T ss_dssp             --HHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHH-------------------------------------
T ss_pred             --ccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcC-------------------------------------
Confidence              01111         346677788889999999998875100                                     


Q ss_pred             hcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHH
Q psy13922        458 ERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~  503 (509)
                            ...+.+        ++|+|++.++++|++++++|++++++
T Consensus       390 ------~~~~~~--------~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          390 ------QKHFDH--------YIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             ------HTTSCS--------EEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             ------CCCCCC--------eEEEEecCCHHHHHHHHHHHHHHHhh
Confidence                  001223        99999999999999999999998753

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=5.4e-43  Score=366.01  Aligned_cols=349  Identities=24%  Similarity=0.369  Sum_probs=287.2

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      ..|+.+++++.+.+..   .....|++..|..++|+++++++... +.++++++|++|+|+++|+..+++.++++||   
T Consensus        71 ~~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd---  143 (427)
T 3dyd_A           71 PTDPEVTQAMKDALDS---GKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLANPGQ---  143 (427)
T ss_dssp             CCCHHHHHHHHHHHHH---CCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCCTTC---
T ss_pred             CCCHHHHHHHHHHHhc---CcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcCCCC---
Confidence            3478999999999987   44556999999999999999999766 7778889999999999999999999999888   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHH
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDII  184 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~  184 (509)
                       +|+++.|+|.++...++..|.+++.++.+++.+|.+|++.|++.+++     ++++|++++|+||||.+++.+++++|+
T Consensus       144 -~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~  217 (427)
T 3dyd_A          144 -NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE-----KTACLIVNNPSNPCGSVFSKRHLQKIL  217 (427)
T ss_dssp             -EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             -EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc-----CCCEEEEECCCCCCCCCCCHHHHHHHH
Confidence             99999999999999999999999999998766789999999998876     789999999999999999999999999


Q ss_pred             HHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC------H
Q psy13922        185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD------P  258 (509)
Q Consensus       185 ~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~------~  258 (509)
                      ++|+++|+++|+||+|.+|.+++. .+.++..+..       +.++++++|+||.| |++|+|+||+++  .+      +
T Consensus       218 ~~~~~~~~~~i~Deay~~~~~~g~-~~~~~~~~~~-------~~~vi~~~S~sK~~-~~~G~riG~~~~--~~~~~~~~~  286 (427)
T 3dyd_A          218 AVAARQCVPILADEIYGDMVFSDC-KYEPLATLST-------DVPILSCGGLAKRW-LVPGWRLGWILI--HDRRDIFGN  286 (427)
T ss_dssp             HHHHHTTCCEEEECTTTTCBCSSC-CCCCGGGGCS-------SCCEEEEEESTTTS-SCGGGCCEEEEE--ECSTTSSHH
T ss_pred             HHHHHCCCEEEEEcCchhhccCCC-cCccHHHhCC-------CCcEEEEeeccccC-CCcCcceEEEEe--cCcchhhHH
Confidence            999999999999999999988643 3444443321       23489999999999 799999999984  33      5


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      ++++.+........+++.+                                  ++.++..+++         ....++++
T Consensus       287 ~i~~~l~~~~~~~~~~~~~----------------------------------~~~a~~~~L~---------~~~~~~~~  323 (427)
T 3dyd_A          287 EIRDGLVKLSQRILGPCTI----------------------------------VQGALKSILC---------RTPGEFYH  323 (427)
T ss_dssp             HHHHHHHHHHHHHCCSCHH----------------------------------HHHHHHHHHH---------HSCHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHH----------------------------------HHHHHHHHHH---------hcCHHHHH
Confidence            7888887765445567777                                  4555444433         11123477


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|+++|++.+..+++++|+|+.++...       ..+..++.+++..+++++||++.||..|+. 
T Consensus       324 ~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-  395 (427)
T 3dyd_A          324 NTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEH-------FPEFENDVEFTERLVAEQSVHCLPATCFEY-  395 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGG-------CTTCSSHHHHHHHHHHHHCEECEEGGGGTC-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhh-------cCCCCCHHHHHHHHHHHCCEEEECCcccCC-
Confidence            888899999999999999999999888999999997765210       001123456677788889999999987765 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     ++          ++|++++.++++|++++++|.
T Consensus       396 -----------------------------------------------~~----------~iRis~~~~~e~i~~~l~~l~  418 (427)
T 3dyd_A          396 -----------------------------------------------PN----------FIRVVITVPEVMMLEACSRIQ  418 (427)
T ss_dssp             -----------------------------------------------TT----------EEEEESCSCHHHHHHHHHHHH
T ss_pred             -----------------------------------------------CC----------eEEEEECCCHHHHHHHHHHHH
Confidence                                                           44          999999999999999999999


Q ss_pred             HHHHHHH
Q psy13922        499 EFHEEFL  505 (509)
Q Consensus       499 ~~~~~~~  505 (509)
                      +++++++
T Consensus       419 ~~l~~~~  425 (427)
T 3dyd_A          419 EFCEQHY  425 (427)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-43  Score=367.69  Aligned_cols=361  Identities=17%  Similarity=0.263  Sum_probs=281.7

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.|.+  |+.+.+++.+++..   ....+|++..|.+++|+++++++.+.+|.++++++|++|+|+++++..++++++++
T Consensus        65 g~~~~~~~~~v~~a~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~  141 (447)
T 3b46_A           65 GFFSYSPPQFAIKEAQKALDI---PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNA  141 (447)
T ss_dssp             CSCSSCCCHHHHHHHHHHTTS---GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCC
Confidence            55554  68899999988875   23456999889999999999999988888888899999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCC----------CCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK----------QWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      ||    .|+++.|+|..+...++..|.+++.++.+++.          +|.+|++.|++.++.     ++++|++++|||
T Consensus       142 gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~l~~p~n  212 (447)
T 3b46_A          142 GD----EVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS-----KTKAVIINTPHN  212 (447)
T ss_dssp             TC----EEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-----TEEEEEEESSCT
T ss_pred             CC----EEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-----CCeEEEEeCCCC
Confidence            88    99999999999999999999999999987542          578999999998875     799999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      |||.++|.+++++|+++|++||++||+||+|.++.+++  .+.++..+.++.     ..+++++.|+||.+ |++|+|+|
T Consensus       213 ptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~-----~~~~i~i~S~sK~~-~~~G~riG  284 (447)
T 3b46_A          213 PIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD--SFTRIATLSPEI-----GQLTLTVGSAGKSF-AATGWRIG  284 (447)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS--CCCCGGGSCHHH-----HTTEEEEEEHHHHT-TCTTSCCE
T ss_pred             CCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC--CCcCHHHcCCCC-----CCcEEEEecCchhc-CCcchhhE
Confidence            99999999999999999999999999999999998865  333433321111     12388899999999 79999999


Q ss_pred             EEeeecC-CHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        250 YSEVINL-DPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       250 ~v~~~~~-~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                      |++   + ++++++.+..... ...+.+.+                                  .|.++..+++      
T Consensus       285 ~~~---~~~~~l~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~aL~------  321 (447)
T 3b46_A          285 WVL---SLNAELLSYAAKAHTRICFASPSP----------------------------------LQEACANSIN------  321 (447)
T ss_dssp             EEE---CSCHHHHHHHHHHHHHHTSSCCHH----------------------------------HHHHHHHHHH------
T ss_pred             EEE---eCCHHHHHHHHHHHhhccCCCChH----------------------------------HHHHHHHHHh------
Confidence            998   7 9999999887654 34455666                                  4444443332      


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCC---CHHHHHHHhhcC-CCCcHHHHHHHHh
Q psy13922        328 PSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL---PAKAIAKAKAEG-KCPSVLYAFELLE  403 (509)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~g-~~~~~~~~~~ll~  403 (509)
                        .....++++++++.++++++.+.+.|+++ |+.+..+.+++|+|++++-   |.+... ....+ ..++.+++..+++
T Consensus       322 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~l~~  397 (447)
T 3b46_A          322 --DALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPY-PEEILNKGKDFRISHWLIN  397 (447)
T ss_dssp             --HHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCCCTTCCC-CGGGSSSCHHHHHHHHHHH
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccCcccccc-ccccccCCCHHHHHHHHHH
Confidence              01113347889999999999999999998 8888889999999987751   000000 00000 0123456667777


Q ss_pred             hcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe
Q psy13922        404 RTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI  483 (509)
Q Consensus       404 ~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~  483 (509)
                      ++||.+.||..|+....                                           ...+.+        ++|+++
T Consensus       398 ~~gV~v~pg~~f~~~~~-------------------------------------------~~~~~~--------~iRls~  426 (447)
T 3b46_A          398 ELGVVAIPPTEFYIKEH-------------------------------------------EKAAEN--------LLRFAV  426 (447)
T ss_dssp             HTCEECBCGGGGSCGGG-------------------------------------------GGGGTT--------EEEEEC
T ss_pred             hCCEEEECchHhCCCCc-------------------------------------------cCCCCC--------EEEEEE
Confidence            89999999988875100                                           000123        999999


Q ss_pred             ecChHHHHHHHHHHHHH
Q psy13922        484 LPQPEKLKAMLEKFREF  500 (509)
Q Consensus       484 ~~~~~~i~~~~~~l~~~  500 (509)
                      +.++++|++++++|+++
T Consensus       427 ~~~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          427 CKDDAYLENAVERLKLL  443 (447)
T ss_dssp             CSCHHHHHHHHHHGGGG
T ss_pred             eCCHHHHHHHHHHHHHH
Confidence            99999999999999873

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=3.2e-42  Score=362.48  Aligned_cols=370  Identities=18%  Similarity=0.308  Sum_probs=291.5

Q ss_pred             HHHHHHHHhhcCCCCC----CCCC---CC-HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC
Q psy13922          6 SLSLQVLALVSLPQLF----DDPR---FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ   77 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~---~p-~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~   77 (509)
                      +.+|+++.....|.++    |.|.   +| +.+.+++.+.++... ....+|++..|.+++|+++++++.+.+|.+ +++
T Consensus        64 s~~~~~~~~~~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~  141 (448)
T 3aow_A           64 SEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYA-DKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDN  141 (448)
T ss_dssp             CHHHHHHHHHHTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSH-HHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTS
T ss_pred             cHHHHHHHhccCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhh-HHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Chh
Confidence            4678888877766654    4443   34 468888888887611 123469999999999999999998888876 789


Q ss_pred             cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-
Q psy13922         78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-  156 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-  156 (509)
                      +|++|+|+++++..++++++++||    .|+++.|+|.++...++..|.+++.++.+++   ++|++.|++.++..... 
T Consensus       142 ~v~~t~G~~~al~~~~~~l~~~Gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~  214 (448)
T 3aow_A          142 DIMITSGSQQALDLIGRVFLNPGD----IVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQG  214 (448)
T ss_dssp             EEEEESSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHHHHTT
T ss_pred             hEEEeCcHHHHHHHHHHHHcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHhhhhccC
Confidence            999999999999999999999988    9999999999999999999999999998764   58999999999721000 


Q ss_pred             CCceEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEe
Q psy13922        157 CNPRAIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMS  235 (509)
Q Consensus       157 ~~~~~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  235 (509)
                      .++++|+ +++|+||||.++|.+++++|+++|++||++||+||+|.++.+++. ...++.++..       ..++++++|
T Consensus       215 ~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~-~~~~~~~~~~-------~~~vi~~~S  286 (448)
T 3aow_A          215 KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN-PEKKIKALDN-------EGRVIYLGT  286 (448)
T ss_dssp             CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC-CCCCTGGGCT-------TSCEEEEEE
T ss_pred             CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC-CCcCHHhcCC-------CCCEEEEcc
Confidence            2688986 589999999999999999999999999999999999999988643 3344444321       234899999


Q ss_pred             cccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc
Q psy13922        236 CSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT  314 (509)
Q Consensus       236 ~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (509)
                      |||.+ | +|+|+||++   +++++++.+..... ...+++.+                                  .|.
T Consensus       287 ~SK~~-~-~GlriG~v~---~~~~l~~~l~~~~~~~~~~~~~~----------------------------------~q~  327 (448)
T 3aow_A          287 FSKIL-A-PGFRIGWMV---GDPGIIRKMEIAKQSTDLCTNVF----------------------------------GQV  327 (448)
T ss_dssp             STTTT-C-GGGCCEEEE---ECHHHHHHHHHHHHHHHSSCCHH----------------------------------HHH
T ss_pred             chhhc-c-ccccEEEEE---eCHHHHHHHHHHHHHhcCCCCHH----------------------------------HHH
Confidence            99999 7 999999998   68999999987654 23455666                                  455


Q ss_pred             hhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCeeccCCceeEEeecCCCCHHHHHHHhhcCCC
Q psy13922        315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS-IE-GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKC  392 (509)
Q Consensus       315 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~  392 (509)
                      ++..+++     +   ..+.++++++++.++++++.+.+.|++ +| ++.+..|.+++|+|++++  .         +. 
T Consensus       328 a~~~~L~-----~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~--~---------~~-  387 (448)
T 3aow_A          328 VAWRYVD-----G---GYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP--D---------GI-  387 (448)
T ss_dssp             HHHHHHH-----T---THHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECS--T---------TC-
T ss_pred             HHHHHHH-----h---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcC--C---------CC-
Confidence            5444443     1   123455888999999999999999987 67 688888899999998775  1         22 


Q ss_pred             CcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCC
Q psy13922        393 PSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQ  472 (509)
Q Consensus       393 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (509)
                      +..+++..++++ ||.++||..|+...                                              .+.+   
T Consensus       388 ~~~~l~~~l~~~-gV~v~pg~~f~~~~----------------------------------------------~~~~---  417 (448)
T 3aow_A          388 DSKKMLERAIKK-GVAYVPGEAFYAHR----------------------------------------------DVKN---  417 (448)
T ss_dssp             CHHHHHHHHHHT-TEECEEGGGGSTTC----------------------------------------------CCCS---
T ss_pred             CHHHHHHHHHHC-CcEEEcchhhcCCC----------------------------------------------CCCC---
Confidence            345555555555 99999999887610                                              1222   


Q ss_pred             CCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHh
Q psy13922        473 VPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       473 ~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                           +||++++ .++++|++++++|.++++++.+
T Consensus       418 -----~iRls~~~~~~e~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          418 -----TMRLNFTYVDEDKIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             -----EEEEECSSSCTHHHHHHHHHHHHHHHHHHC
T ss_pred             -----EEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                 9999999 5799999999999999987654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=1.7e-41  Score=350.16  Aligned_cols=352  Identities=16%  Similarity=0.253  Sum_probs=280.4

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCCC-cEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQ-DVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~   97 (509)
                      +.|.+  |+.+++++.+.+..     ..+|++..|..++|+++++++.+++|++ ++++ +|++|+|+++++..++++++
T Consensus        38 ~~~~~~~~~~v~~a~~~~~~~-----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~  112 (396)
T 3jtx_A           38 GEPKHPTPKVITDALTASLHE-----LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL  112 (396)
T ss_dssp             CSCCSCCCHHHHHHHHHTGGG-----GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC
T ss_pred             cCCCCCCCHHHHHHHHHHhhh-----ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh
Confidence            55555  68899998887753     4559999999999999999999998987 7888 99999999999999999999


Q ss_pred             cCC-CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         98 EDV-DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        98 ~~g-d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ++| ++.++.|+++.|+|.++...++..|.+++.++.+ +.+|.+|++.|++.+++     ++++|++++||||||.+++
T Consensus       113 ~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g~~~d~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~  186 (396)
T 3jtx_A          113 NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSISEEVWK-----RTKLVFVCSPNNPSGSVLD  186 (396)
T ss_dssp             CC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTTCCCCGGGSCHHHHH-----TEEEEEEESSCTTTCCCCC
T ss_pred             CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCCCccCHHHHHHhhcc-----CcEEEEEECCCCCCCCcCC
Confidence            886 1111399999999999999999999999999994 44678999999999987     7999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      .+++++|+++|+++|+++|+||+|.++.+++. .+.+.......+...  ..++++++|+||.+ |++|+|+||++   .
T Consensus       187 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~-~~~G~r~G~~~---~  259 (396)
T 3jtx_A          187 LDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRS--RQKLLMFTSLSKRS-NVPGLRSGFVA---G  259 (396)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCC--CTTEEEEEESTTTS-SCGGGCCEEEE---E
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccc--cCcEEEEecccccc-CCcccceEEEE---e
Confidence            99999999999999999999999999988753 333444333222211  23488899999999 79999999998   7


Q ss_pred             CHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        257 DPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++++.+..... ...+++.+                                  ++.++..+++           ..+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----------~~~  294 (396)
T 3jtx_A          260 DAELLKNFLLYRTYHGSAMSIP----------------------------------VQRASIAAWD-----------DEQ  294 (396)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCHH----------------------------------HHHHHHHHHH-----------CCH
T ss_pred             CHHHHHHHHHHHhhcccCCCHH----------------------------------HHHHHHHHhC-----------CHH
Confidence            9999999987655 34456666                                  4444444433           123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++++.++.++++++.+.+.|+++  +.+..+.+++++|++++.             .++..++..+++++||.+.||..|
T Consensus       295 ~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~  359 (396)
T 3jtx_A          295 HVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVPD-------------GDDLAFARNLWQKAAIQVLPGRFL  359 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECTT-------------SCHHHHHHHHHHHHCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECCC-------------CCHHHHHHHHHHHCCEEEeCChHh
Confidence            47888899999999999999875  456678899999987751             134555677778899999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +..                                                ..  +...+..++||+++.++++|+++++
T Consensus       360 ~~~------------------------------------------------~~--~~~~~~~~iRis~~~~~~~i~~~l~  389 (396)
T 3jtx_A          360 ARD------------------------------------------------TE--QGNPGEGYVRIALVADVATCVKAAE  389 (396)
T ss_dssp             CCC------------------------------------------------CT--TCCTTTTEEEEECCSCHHHHHHHHH
T ss_pred             CCc------------------------------------------------cc--ccCCCCCeEEEEEcCCHHHHHHHHH
Confidence            761                                                00  0011233999999999999999999


Q ss_pred             HHHHHH
Q psy13922        496 KFREFH  501 (509)
Q Consensus       496 ~l~~~~  501 (509)
                      +|++++
T Consensus       390 ~l~~~l  395 (396)
T 3jtx_A          390 DIVSLY  395 (396)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998864

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=1e-42  Score=360.91  Aligned_cols=374  Identities=17%  Similarity=0.203  Sum_probs=293.7

Q ss_pred             HHHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-Cc
Q psy13922          6 SLSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QD   78 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~   78 (509)
                      +.++.++.....++++    +.|.+  |+.+++++.+++..   ....+|++..|..++|+++++++.+.+|+++++ ++
T Consensus        11 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~   87 (410)
T 3e2y_A           11 NVWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFI---DNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEE   87 (410)
T ss_dssp             CHHHHTTTTTTSTTSEECSSCCCCSCCCHHHHHHHHHHHTC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTS
T ss_pred             cHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhC---ccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            4667777766666655    66765  67899999999887   345569998899999999999999999988888 79


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC---------CCCCCCCHHHHHHH
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE---------SKQWGLPISELERS  149 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d~~~L~~~  149 (509)
                      |++|+|+++++..+++.++++||    +|+++.|+|.++...++..|.+++.++.++         +.+|.+|++.|++.
T Consensus        88 i~~~~g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~  163 (410)
T 3e2y_A           88 ILVAVGAYGSLFNSIQGLVDPGD----EVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK  163 (410)
T ss_dssp             EEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTT
T ss_pred             EEEeCCcHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhh
Confidence            99999999999999999999988    999999999999999999999999999863         23567899999998


Q ss_pred             HHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCce
Q psy13922        150 ITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME  229 (509)
Q Consensus       150 i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (509)
                      +++     ++++|++++|+||||.+++++++++|+++|+++|+++|+||+|.++.+++. .+.++.++...      ..+
T Consensus       164 ~~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~------~~~  231 (410)
T 3e2y_A          164 FSS-----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH-THVKIATLPGM------WER  231 (410)
T ss_dssp             CCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTTC------GGG
T ss_pred             cCC-----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC-CCCCHHHcCCc------cCe
Confidence            876     799999999999999999999999999999999999999999999988653 33344333111      235


Q ss_pred             eEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccC
Q psy13922        230 LASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG  308 (509)
Q Consensus       230 vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (509)
                      +++++|+||.+ |++|+|+||++   .++++++.+..... ...+++.+                               
T Consensus       232 ~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  276 (410)
T 3e2y_A          232 TITIGSAGKTF-SVTGWKLGWSI---GPAHLIKHLQTVQQNSFYTCATP-------------------------------  276 (410)
T ss_dssp             EEEEEEHHHHS-SCGGGCCEEEE---CCHHHHHHHHHHHHTTTCCCCHH-------------------------------
T ss_pred             EEEEecchhhc-CCCCceEEEEE---ECHHHHHHHHHHHHhhccCCChH-------------------------------
Confidence            89999999999 79999999998   79999999887665 34556666                               


Q ss_pred             cccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhh
Q psy13922        309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       309 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                         .+.++..+++...   ..+..+.++++++++.++++++.+.+.|+++ |+.+..+++++|+|+++....        
T Consensus       277 ---~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--------  341 (410)
T 3e2y_A          277 ---LQAALAEAFWIDI---KRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLG--------  341 (410)
T ss_dssp             ---HHHHHHHHHHHHH---TTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGC--------
T ss_pred             ---HHHHHHHHHHhhh---ccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhh--------
Confidence               3333332221000   0000122347888899999999999999998 899889999999998775110        


Q ss_pred             cCCC-------CcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhccc
Q psy13922        389 EGKC-------PSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTG  461 (509)
Q Consensus       389 ~g~~-------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (509)
                      .+..       ++.+++..+++++||.+.||..|+....                           .             
T Consensus       342 ~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~---------------------------~-------------  381 (410)
T 3e2y_A          342 ADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS---------------------------K-------------  381 (410)
T ss_dssp             CCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT---------------------------H-------------
T ss_pred             cccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC---------------------------C-------------
Confidence            0111       1236677788899999999998865100                           0             


Q ss_pred             ccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        462 ICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                         ..+.+        ++|||++.++++|++++++|++
T Consensus       382 ---~~~~~--------~iRis~~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          382 ---PHFEK--------LVRFCFIKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             ---HHHTT--------EEEEECCCCHHHHHHHHHHHHT
T ss_pred             ---CCCCC--------EEEEEEcCCHHHHHHHHHHHHh
Confidence               01122        9999999999999999999975

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=3.3e-42  Score=355.84  Aligned_cols=338  Identities=21%  Similarity=0.364  Sum_probs=272.1

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+.+++.+.+.+.......+|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++++++++
T Consensus        43 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~  122 (398)
T 3ele_A           43 GNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSD  122 (398)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCS
T ss_pred             CCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCC
Confidence            56654  6789999999988722222456999999999999999999999998899999999999999999999999999


Q ss_pred             C-CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 V-DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 g-d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      | |    +|+++.|+|.++...++..|.+++.+|.+++ +|.+|++.|++.+++     ++++|++++||||||.+++.+
T Consensus       123 g~d----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~  192 (398)
T 3ele_A          123 AYD----EFITIAPYFPEYKVFVNAAGARLVEVPADTE-HFQIDFDALEERINA-----HTRGVIINSPNNPSGTVYSEE  192 (398)
T ss_dssp             TTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCTT-TSSCCHHHHHHTCCT-----TEEEEEECSSCTTTCCCCCHH
T ss_pred             CCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCCc-CCcCCHHHHHHHhCc-----CCCEEEEcCCCCCCCCCCCHH
Confidence            8 8    9999999999999999999999999998754 689999999999876     799999999999999999999


Q ss_pred             HHHHHHHHHHH------CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        179 NIQDIIKFAHR------EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       179 ~l~~l~~ia~~------~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ++++|+++|++      +|+++|+||+|.+|.+++. ........         ..++++++|+||.+ |++|+|+||++
T Consensus       193 ~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~---------~~~~i~~~s~sK~~-~~~G~r~G~~~  261 (398)
T 3ele_A          193 TIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI-KVPFVTKY---------YDNTLVCYSYSKSL-SLPGERIGYVL  261 (398)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC-CCCCGGGT---------CSSEEEEEESTTTS-SCTTTCCEEEE
T ss_pred             HHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC-CcCChHhh---------cCCeEEEEehhhcC-CCccceeEEEE
Confidence            99999999999      9999999999999988653 22222111         22489999999999 79999999998


Q ss_pred             eecCCHH------HHHHHHHhhh--cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        253 VINLDPG------VKAMLHKSIS--AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       253 ~~~~~~~------~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                         .+++      +.+.+.....  .+.+++.+                                  .+.++..+++.. 
T Consensus       262 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~~-  303 (398)
T 3ele_A          262 ---VPDEVYDKAELYAAVCGAGRALGYVCAPSL----------------------------------FQKMIVKCQGAT-  303 (398)
T ss_dssp             ---CCTTSTTHHHHHHHHHHHHHHTTCCCSCHH----------------------------------HHHHHTTCTTCC-
T ss_pred             ---EcchhhhHHHHHHHHHHHhhhccccCCCHH----------------------------------HHHHHHHHhcCH-
Confidence               5555      4444443332  23445555                                  444444444310 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                                    ..++.++++++.+.+.|+++ ++.+..+.+++++|++++            +. +...+ .+.|.+
T Consensus       304 --------------~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~------------~~-~~~~~-~~~l~~  354 (398)
T 3ele_A          304 --------------GDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKAL------------ED-DSNAF-CEKAKE  354 (398)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECS------------SS-CHHHH-HHHHHT
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcC------------CC-CHHHH-HHHHHH
Confidence                          02456777888888888887 888889999999998765            11 23443 456778


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      +||.+.||..|+.                                                ++          ++|++++
T Consensus       355 ~gi~v~~g~~~~~------------------------------------------------~~----------~iRis~~  376 (398)
T 3ele_A          355 EDVLIVAADGFGC------------------------------------------------PG----------WVRISYC  376 (398)
T ss_dssp             TTEECEESGGGTC------------------------------------------------TT----------EEEEECC
T ss_pred             CCEEEeCccccCC------------------------------------------------CC----------eEEEEec
Confidence            8999999988775                                                44          9999999


Q ss_pred             cChHHHHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      .++++|++++++|++++++++
T Consensus       377 ~~~e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          377 VDREMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999998764

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1e-41  Score=349.22  Aligned_cols=341  Identities=17%  Similarity=0.232  Sum_probs=281.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+++++.+.+..   .. ..|++ .| .++|+++++++++++|+++++++|++|+|++++++.++++++++
T Consensus        31 ~~~~~~~~~~v~~a~~~~~~~---~~-~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~  104 (377)
T 3fdb_A           31 AESDFSTCPAVLQAITDAVQR---EA-FGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPA  104 (377)
T ss_dssp             SCCCSCCCHHHHHHHHHHHHT---TC-CSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCT
T ss_pred             cCCCCCCCHHHHHHHHHHHHc---CC-CCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCC
Confidence            55554  78999999999887   33 34988 77 89999999999999998889999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.+++    +|++.|++.+++     +++++++++|+||||.+++.++
T Consensus       105 gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~  171 (377)
T 3fdb_A          105 QS----KVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQA-----GARSILLCNPYNPLGMVFAPEW  171 (377)
T ss_dssp             TC----CEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHT-----TCCEEEEESSBTTTTBCCCHHH
T ss_pred             CC----EEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhcc-----CCCEEEEeCCCCCCCCCCCHHH
Confidence            88    9999999999999999999999999998764    899999999987     6899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++||+++|+||+|.++.+++.....++..+..       ..++++++|+||.+ |++|+|+||+++  .+++
T Consensus       172 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-------~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~  241 (377)
T 3fdb_A          172 LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-------ASVCITITAPSKAW-NIAGLKCAQIIF--SNPS  241 (377)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-------HHHEEEEECSTTTT-TCGGGCCEEEEC--CSHH
T ss_pred             HHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-------CCcEEEEEeChHhc-cCcchhheEEEe--CCHH
Confidence            9999999999999999999999998875123333332211       12388899999999 799999999873  5889


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+..... ...+++.+                                  ++.++..+++          ...++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~~~~  277 (377)
T 3fdb_A          242 DAEHWQQLSPVIKDGASTL----------------------------------GLIAAEAAYR----------YGTDFLN  277 (377)
T ss_dssp             HHHHHHHSCHHHHCCCCHH----------------------------------HHHHHHHHHH----------HCHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCHH----------------------------------HHHHHHHHHh----------ccHHHHH
Confidence            9999887654 33456666                                  4444333322          1234578


Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.++++++.+.+.|++ +|++.+..+++++++|++++..          +.  +.+++..+++++||.+.||..|+.
T Consensus       278 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~l~~~~gi~v~~g~~~~~  345 (377)
T 3fdb_A          278 QEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDT----------TI--EGSPSEFFIEKAKVAMNDGAWFGE  345 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTS----------CC--CSCHHHHHHHHHCEECEEGGGGCG
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECccc----------CC--CHHHHHHHHHhCCEEecCChhccC
Confidence            8899999999999999998 8899999999999999877521          12  233467778888999999998876


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++.++++|++++++|
T Consensus       346 ------------------------------------------------~~~~--------~~Ris~~~~~e~i~~~l~~l  369 (377)
T 3fdb_A          346 ------------------------------------------------DGTG--------FCRLNFATSREVLEEAIDRM  369 (377)
T ss_dssp             ------------------------------------------------GGTT--------EEEEECCSCHHHHHHHHHHH
T ss_pred             ------------------------------------------------CCCC--------EEEEEeCCCHHHHHHHHHHH
Confidence                                                            3333        99999999999999999999


Q ss_pred             HHHHHH
Q psy13922        498 REFHEE  503 (509)
Q Consensus       498 ~~~~~~  503 (509)
                      ++++++
T Consensus       370 ~~~l~~  375 (377)
T 3fdb_A          370 AKAVSH  375 (377)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            998854

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=2.8e-41  Score=347.79  Aligned_cols=364  Identities=24%  Similarity=0.420  Sum_probs=289.8

Q ss_pred             HHHHHHHHhhcC-CCCC----CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc
Q psy13922          6 SLSLQVLALVSL-PQLF----DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD   78 (509)
Q Consensus         6 ~~~~~~~~~~~~-~~~~----~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~   78 (509)
                      +.++.++..+.. +.++    +.|.  .|+.+.+++.+.+..   .. .+|++..|..++|+++++++.+.+|+++++++
T Consensus        13 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~---~~-~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~   88 (389)
T 1gd9_A           13 SEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDK---GL-THYGPNIGLLELREAIAEKLKKQNGIEADPKT   88 (389)
T ss_dssp             CHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHT---TC-CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTT
T ss_pred             hHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhC---CC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC
Confidence            456666665543 3333    4444  368899999998876   23 34988889999999999999988888788899


Q ss_pred             -EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccC
Q psy13922         79 -VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHC  157 (509)
Q Consensus        79 -i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~  157 (509)
                       |++|+|+++++..++++++++||    .|+++.|+|.++...++..|.+++.++.+++.+|.+|++.|++.+++     
T Consensus        89 ~v~~~~g~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----  159 (389)
T 1gd9_A           89 EIMVLLGANQAFLMGLSAFLKDGE----EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-----  159 (389)
T ss_dssp             SEEEESSTTHHHHHHHTTTCCTTC----EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT-----
T ss_pred             eEEEcCChHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc-----
Confidence             99999999999999999988888    99999999999999999999999999987655678999999999876     


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++++|++++|+||||.++|.+++++|+++|++||+++|+||+|.++.+++. .+.++.++.. .     ..++++++|+|
T Consensus       160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-~-----~~~~i~~~s~s  232 (389)
T 1gd9_A          160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA-RHYSIASLDG-M-----FERTITVNGFS  232 (389)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSTT-C-----GGGEEEEEEST
T ss_pred             CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CCCCHhhccC-C-----CCCEEEEecCh
Confidence            789999999999999999999999999999999999999999999987642 2334433210 0     12478899999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM  316 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  316 (509)
                      |.+ |++|+|+||++   .++++++.+..... ...+++.+                                  .+.++
T Consensus       233 K~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~  274 (389)
T 1gd9_A          233 KTF-AMTGWRLGFVA---APSWIIERMVKFQMYNATCPVTF----------------------------------IQYAA  274 (389)
T ss_dssp             TTT-TCGGGCCEEEE---CCHHHHHHHHHHHTTTTCSCCHH----------------------------------HHHHH
T ss_pred             hhc-CCcccceEEEE---ECHHHHHHHHHHHhhhccCCCHH----------------------------------HHHHH
Confidence            999 79999999998   68999999987655 23455665                                  44444


Q ss_pred             hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      ..+++.        ....++++++++.++++++.+.+.|+++ |+++..+.+++++|++++  .        .+. +..+
T Consensus       275 ~~~l~~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~--------~~~-~~~~  334 (389)
T 1gd9_A          275 AKALKD--------ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR--D--------TGL-TSKK  334 (389)
T ss_dssp             HHHHTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCG--G--------GTC-CHHH
T ss_pred             HHHHhC--------CCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEecc--C--------CCC-CHHH
Confidence            444431        1111257888999999999999999998 888888889999997664  1        022 3445


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +...+++++||.+.||..|+.                                                .+.+       
T Consensus       335 ~~~~l~~~~gi~v~~g~~~~~------------------------------------------------~~~~-------  359 (389)
T 1gd9_A          335 FSELMLKEARVAVVPGSAFGK------------------------------------------------AGEG-------  359 (389)
T ss_dssp             HHHHHHHHTCEECEEGGGGCG------------------------------------------------GGTT-------
T ss_pred             HHHHHHHhCCEEEeCchhhCC------------------------------------------------CCCC-------
Confidence            555666689999999987765                                                2223       


Q ss_pred             eeEEEEeecChHHHHHHHHHHHHHHHH
Q psy13922        477 YHFRTTILPQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       477 ~~~Rls~~~~~~~i~~~~~~l~~~~~~  503 (509)
                       ++|++++.++++|++++++|++++++
T Consensus       360 -~iRi~~~~~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          360 -YVRISYATAYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             -BEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEEecCCHHHHHHHHHHHHHHHHh
Confidence             89999999999999999999999865

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=1.2e-41  Score=352.99  Aligned_cols=335  Identities=13%  Similarity=0.141  Sum_probs=261.1

Q ss_pred             CCHHHHHHHHHHH-hcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc--EEEeCCHHHHHHHHHHHhhc--CC
Q psy13922         26 FPDDVKQRAQAVL-DGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD--VILSAGASDGIKSVLKLLIE--DV  100 (509)
Q Consensus        26 ~p~~v~~a~~~~l-~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~~--~g  100 (509)
                      .|+.+.++.. .+ ..   ....+|++..|.++||+++++++.++++..+++++  |++|+|+++|+.++++.+..  + 
T Consensus        48 ~~~~v~~a~~-~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-  122 (405)
T 3k7y_A           48 IFDSVLNADK-LVTEN---YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-  122 (405)
T ss_dssp             CCHHHHHHHH-HHHHH---CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-
T ss_pred             ccHHHHHHHH-HhcCC---CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-
Confidence            3677888776 44 33   34456999999999999999999877776667774  69999999999999999988  7 


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC-CCCCCCCCCCHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKEN  179 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~-p~NPtG~~~s~~~  179 (509)
                      |    +|++++|+|.+|...++.+|++++.+|+.++.+|++|++.|++.+++.   ++++++++++ ||||||.++++++
T Consensus       123 d----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~i~l~~~~~NPTG~~~s~~~  195 (405)
T 3k7y_A          123 E----TLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI---PNGSSVILQISCYNPCSVNIEEKY  195 (405)
T ss_dssp             C----EEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS---CSSCEEEECCSSCTTTCCCCCHHH
T ss_pred             C----EEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC---CCCeEEEEeCCCCCCCCCCCCHHH
Confidence            8    999999999999999999999999999854446899999999999852   1467888865 4999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCC-CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEG-SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      +++|+++|+++|++||+||+|.+|.+++. ....++..+...      ..++|+++||||.| |++|+|+||++++.+++
T Consensus       196 ~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~  268 (405)
T 3k7y_A          196 FDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEK------NIAFSVCQSFSKNM-SLYGERAGALHIVCKNQ  268 (405)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTT------TCCEEEEEECTTTS-CCTTTTEEEEEEECSSH
T ss_pred             HHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhc------CCcEEEEeeCCccC-CCccccceEEEEEeCCH
Confidence            99999999999999999999999987532 122233333221      23599999999999 79999999986445688


Q ss_pred             HHHHHHHH----hh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc-hHH
Q psy13922        259 GVKAMLHK----SI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS-YEQ  332 (509)
Q Consensus       259 ~~~~~l~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~~~  332 (509)
                      ++++.+..    .. ..+.+++.+                                  +|.++..+++     ++. .+.
T Consensus       269 ~~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~-----~~~l~~~  309 (405)
T 3k7y_A          269 EEKKIVFNNLCFIVRKFYSSPVIH----------------------------------TNRILCQLLN-----NQNLKLN  309 (405)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHHHHH-----CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCcHH----------------------------------HHHHHHHHhC-----CHHHHHH
Confidence            87765542    22 244556666                                  4544444433     111 134


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----cCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFN----SIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~----~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                      |.++++.+++.++++++.+.+.|+    ++.   ++++.+|+||||+|++++  .               +++.++ +++
T Consensus       310 ~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~--~---------------~~~~~L-~~~  371 (405)
T 3k7y_A          310 WIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLL--A---------------KIAEHL-KTH  371 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGG--G---------------GGTTTT-TTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCC--H---------------HHHHHH-HHC
Confidence            666788899999999999999999    762   267889999999997553  1               123455 889


Q ss_pred             CeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-
Q psy13922        406 GICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-  484 (509)
Q Consensus       406 gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-  484 (509)
                      ||+++|                                                       +          . |||++ 
T Consensus       372 gV~v~p-------------------------------------------------------~----------~-Ris~a~  385 (405)
T 3k7y_A          372 HIYIIN-------------------------------------------------------N----------G-RINVSG  385 (405)
T ss_dssp             TEECCT-------------------------------------------------------T----------S-EEEGGG
T ss_pred             CEeecC-------------------------------------------------------C----------C-eEEEec
Confidence            999885                                                       2          1 89998 


Q ss_pred             cChHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~  502 (509)
                      .++++|++++++|+++++
T Consensus       386 ~~~~~i~~~~~~i~~~~~  403 (405)
T 3k7y_A          386 ITKNNVDYIADKICLSLS  403 (405)
T ss_dssp             CCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHh
Confidence            689999999999999875

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=3.1e-41  Score=347.37  Aligned_cols=347  Identities=22%  Similarity=0.369  Sum_probs=280.8

Q ss_pred             CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.  .|+.+.+++.+.+..   . ..+|++..|..++|+++++++.+.+|.++++++|++|+|+++++..++++++++
T Consensus        38 ~~~~~~~~~~v~~a~~~~~~~---~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~  113 (388)
T 1j32_A           38 GEPDFNTPKHIVEAAKAALEQ---G-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEP  113 (388)
T ss_dssp             SSCSSCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCC
Confidence            4444  478899999988876   2 334998889999999999999998898888899999999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.+++.+|.+|++.|++.+++     ++++|++++|+||||.++|.++
T Consensus       114 gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~  184 (388)
T 1j32_A          114 GD----EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPDE  184 (388)
T ss_dssp             TC----EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHH
T ss_pred             CC----EEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-----CceEEEEeCCCCCCCcCCCHHH
Confidence            88    99999999999999999999999999987655678999999999876     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|+++|+||+|.++.+++. .+.++..+..+.     ..+++++.|+||.+ |++|+|+||++   .+++
T Consensus       185 l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~  254 (388)
T 1j32_A          185 VRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA-----YERSVVCSGFAKTY-AMTGWRVGFLA---GPVP  254 (388)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HHTEEEEEESTTTT-TCTTTCCEEEE---CCHH
T ss_pred             HHHHHHHHHHcCCEEEEEccchhcccCCC-CCCCHHHccccc-----cCCEEEEeechhcc-CCcccceEEEE---eCHH
Confidence            99999999999999999999999988643 233433332110     11378899999999 79999999998   7899


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+..... ...+++.+                                  .+.++..+++          ...++++
T Consensus       255 ~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~~~~  290 (388)
T 1j32_A          255 LVKAATKIQGHSTSNVCTF----------------------------------AQYGAIAAYE----------NSQDCVQ  290 (388)
T ss_dssp             HHHHHHHHHHTTTCSCCHH----------------------------------HHHHHHHHHH----------SCSHHHH
T ss_pred             HHHHHHHHHhhcccCCCHH----------------------------------HHHHHHHHHh----------CCcHHHH
Confidence            9998887655 33455555                                  3333322222          0113467


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++.+.+.|+++|++.+..+.+++++|+++.  .        .+. +..++...+++++||.+.||..|+. 
T Consensus       291 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~--------~~~-~~~~~~~~l~~~~gi~v~~g~~~~~-  358 (388)
T 1j32_A          291 EMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA--K--------TGR-SSLDFCSELLDQHQVATVPGAAFGA-  358 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG--G--------GTC-CHHHHHHHHHHHHCEECEEGGGGTC-
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecC--C--------CCC-CHHHHHHHHHHhCCEEEeChhhhCC-
Confidence            888999999999999999988999888899999997664  1        022 3455556666678999999887764 


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     ++          ++|+++++++++|++++++|+
T Consensus       359 -----------------------------------------------~~----------~iRis~~~~~~~i~~~~~~l~  381 (388)
T 1j32_A          359 -----------------------------------------------DD----------CIRLSYATDLDTIKRGMERLE  381 (388)
T ss_dssp             -----------------------------------------------TT----------BEEEECCSCHHHHHHHHHHHH
T ss_pred             -----------------------------------------------CC----------cEEEEecCCHHHHHHHHHHHH
Confidence                                                           33          899999999999999999999


Q ss_pred             HHHHHH
Q psy13922        499 EFHEEF  504 (509)
Q Consensus       499 ~~~~~~  504 (509)
                      ++++++
T Consensus       382 ~~l~~~  387 (388)
T 1j32_A          382 KFLHGI  387 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.8e-41  Score=349.61  Aligned_cols=342  Identities=20%  Similarity=0.319  Sum_probs=273.4

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.+.+  |+.+++++.+.+.+   .. ..|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++++++++
T Consensus        39 g~~~~~~~~~v~~a~~~~~~~---~~-~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~  114 (391)
T 3h14_A           39 GQPGTGAPRGAVEALAKSLET---DA-LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDS  114 (391)
T ss_dssp             SSCSSCSCHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHhc---CC-CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCC
Confidence            55554  67899999998876   33 34999889999999999999999998899999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.+++++|.+|++.|++.        ++++|++++|+||||.+++.++
T Consensus       115 gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~--------~~~~v~i~~p~nptG~~~~~~~  182 (391)
T 3h14_A          115 GD----RVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL--------DLAGLMVASPANPTGTMLDHAA  182 (391)
T ss_dssp             TC----EEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS--------CCSEEEEESSCTTTCCCCCHHH
T ss_pred             CC----EEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc--------CCeEEEECCCCCCCCccCCHHH
Confidence            98    99999999999999999999999999998777788999998765        4899999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|+++|+||+|.++.+++.  ..+....         ..++++++|+||.+ |++|+|+||++   .+++
T Consensus       183 l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~---------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~  247 (391)
T 3h14_A          183 MGALIEAAQAQGASFISDEIYHGIEYEAK--AVTALEL---------TDECYVINSFSKYF-SMTGWRVGWMV---VPED  247 (391)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBSSSC--CCCGGGT---------CSSSEEEEESSSTT-CCTTSCCEEEE---CCGG
T ss_pred             HHHHHHHHHHcCCEEEEECcchhcccCCC--CcChhhc---------CCCEEEEEechhcc-CCccceeEEEE---eCHH
Confidence            99999999999999999999999988653  2333222         12488899999999 79999999998   7889


Q ss_pred             HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        260 VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +++.+..... ...+++.+                                  ++.++..++.           ..++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----------~~~~~~  282 (391)
T 3h14_A          248 QVRVVERIAQNMFICAPHA----------------------------------SQVAALAALD-----------CDAELQ  282 (391)
T ss_dssp             GHHHHHHHHHHTTCCCCHH----------------------------------HHHHHHHHTT-----------CHHHHH
T ss_pred             HHHHHHHHHhhhccCCCHH----------------------------------HHHHHHHHhC-----------ChHHHH
Confidence            9999887665 34456666                                  4444433332           123478


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      +.++.++++++.+.+.|++++...+..+.+++++|++++.+          + .+...++..+++++||.+.||..|+..
T Consensus       283 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~l~~~~gi~v~~g~~~~~~  351 (391)
T 3h14_A          283 ANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDL----------T-DDSRAFAAEILEKAGVAVTPGLDFDPE  351 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTT----------C-SCHHHHHHHHHHHHCEECEEGGGTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCcc----------C-CCHHHHHHHHHHHCCEEEcCchhhCCC
Confidence            88899999999999999988333446788899999877521          1 234555677777789999999988761


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                                                                     .+.+        ++|++++.++++|++++++|+
T Consensus       352 -----------------------------------------------~~~~--------~iRis~~~~~~~i~~~l~~l~  376 (391)
T 3h14_A          352 -----------------------------------------------RGAG--------TLRFSYARATADIEEGLDRLE  376 (391)
T ss_dssp             -----------------------------------------------TGGG--------EEEEECCSCHHHHHHHHHHHH
T ss_pred             -----------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHHH
Confidence                                                           1122        999999999999999999999


Q ss_pred             HHHHHHH
Q psy13922        499 EFHEEFL  505 (509)
Q Consensus       499 ~~~~~~~  505 (509)
                      +++++..
T Consensus       377 ~~~~~~~  383 (391)
T 3h14_A          377 AFMQARG  383 (391)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhc
Confidence            9998644

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=4.7e-41  Score=347.86  Aligned_cols=347  Identities=20%  Similarity=0.248  Sum_probs=283.2

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      .|+.+++++.+.+.+   .....|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++++++++||   
T Consensus        54 ~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd---  127 (407)
T 3nra_A           54 PTPGAFDLFSAGVQS---GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGD---  127 (407)
T ss_dssp             CCTTHHHHHHHHHHH---THHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTC---
T ss_pred             CcHHHHHHHHHHHhc---CCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCC---
Confidence            367899999999987   334459888899999999999999999988766 6999999999999999999999988   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCEEEEEecCC----CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNMEQIGYYLDE----SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                       .|+++.|+|.++...++..|++++.++.+.    +.++.+|++.|++.+++     ++++|++++|+||||.+++.+++
T Consensus       128 -~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l  201 (407)
T 3nra_A          128 -KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-----GARVFLFSNPNNPAGVVYSAEEI  201 (407)
T ss_dssp             -EEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-----TCCEEEEESSCTTTCCCCCHHHH
T ss_pred             -EEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-----CCcEEEEcCCCCCCCcccCHHHH
Confidence             999999999999999999999999999842    24678999999999987     79999999999999999999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|+++|++||+++|+||+|..+.+++. .+.++..+..+     ...+++++.|+||.+ |++|+|+||++   .++++
T Consensus       202 ~~i~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~-----~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~  271 (407)
T 3nra_A          202 GQIAALAARYGATVIADQLYSRLRYAGA-SYTHLRAEAAV-----DAENVVTIMGPSKTE-SLSGYRLGVAF---GSRAI  271 (407)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTSBCTTC-CCCCGGGCTTS-----CGGGEEEEECSSSTT-CCGGGCCEEEE---ECHHH
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCC-CCCChhhcCcc-----cCCcEEEEeCccccc-CCCeeeEEEEE---cCHHH
Confidence            9999999999999999999999988743 33343332100     123488899999999 79999999998   79999


Q ss_pred             HHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        261 KAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       261 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      ++.+..... ...+.+.+                                  .+.++..+++..       .   +++++
T Consensus       272 ~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~~-------~---~~~~~  307 (407)
T 3nra_A          272 IARMEKLQAIVSLRAAGY----------------------------------SQAVLRGWFDEA-------P---GWMED  307 (407)
T ss_dssp             HHHHHHHHHHHTSSSCHH----------------------------------HHGGGGGTTCCC-------T---THHHH
T ss_pred             HHHHHHHHhhhccCCChH----------------------------------HHHHHHHHHhcc-------c---hHHHH
Confidence            999887655 33445555                                  444444444310       1   22567


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.++++++.+.+.|+++|++.+..+.+++++|+++...          + .+...+...+++++||.+.||..|+.  
T Consensus       308 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~l~~~~gi~v~~g~~~~~--  374 (407)
T 3nra_A          308 RIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL----------A-VAPAEFVKILRLQAGVVVTPGTEFSP--  374 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB----------S-SCHHHHHHHHHHHHCEECEEGGGTCT--
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC----------C-CCHHHHHHHHHHhCCEEEeCchhhCC--
Confidence            7788889999999999999899988899999999777521          1 13445556666778999999998875  


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                                    .+.+        ++|++++.++++|++++++|++
T Consensus       375 ----------------------------------------------~~~~--------~iRis~~~~~~~i~~~~~~l~~  400 (407)
T 3nra_A          375 ----------------------------------------------HTAD--------SVRLNFSQDHEAAVAAARRIVT  400 (407)
T ss_dssp             ----------------------------------------------TCTT--------BEEEECCSCHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCC--------EEEEEeCCCHHHHHHHHHHHHH
Confidence                                                          3334        9999999999999999999999


Q ss_pred             HHHHHH
Q psy13922        500 FHEEFL  505 (509)
Q Consensus       500 ~~~~~~  505 (509)
                      ++++++
T Consensus       401 ~~~~~~  406 (407)
T 3nra_A          401 LVERYR  406 (407)
T ss_dssp             HHHHHB
T ss_pred             HHHHhh
Confidence            998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=3.5e-41  Score=349.69  Aligned_cols=343  Identities=20%  Similarity=0.242  Sum_probs=279.2

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+.+  |+.+++++.+++..   ....+|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..+++++++
T Consensus        55 g~~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~  131 (404)
T 2o1b_A           55 GIPDGPTPQGIIDHFQKALTI---PENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVIN  131 (404)
T ss_dssp             CSCSSCCCHHHHHHHHHHTTC---HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCHHHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcC
Confidence            44443  68899999888865   224459888889999999999998888887776 7999999999999999999998


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|.++...++..|.+++.++.++ .+|.+|++.|++.++.     ++++|++++|+||||.++|.+
T Consensus       132 ~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~  201 (404)
T 2o1b_A          132 PGD----YVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID-----KTKLIYLTYPNNPTGSTATKE  201 (404)
T ss_dssp             TTC----EEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH-----HEEEEEECSSCTTTCCCCCHH
T ss_pred             CCC----EEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc-----CceEEEEcCCCCCCCccCCHH
Confidence            888    999999999999999999999999999876 4577899999999976     699999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++  .+.++..+...      ..++++++|+||.+ |++|+|+||++   .++
T Consensus       202 ~l~~l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~  269 (404)
T 2o1b_A          202 VFDEAIAKFKGTDTKIVHDFAYGAFGFDA--KNPSILASENG------KDVAIEIYSLSKGY-NMSGFRVGFAV---GNK  269 (404)
T ss_dssp             HHHHHHHHHTTSSCEEEEECTTTTCBSSS--CCCCGGGSTTH------HHHEEEEEESTTTT-TCGGGCCEEEE---ECH
T ss_pred             HHHHHHHHHHHcCCEEEEEccchhcccCC--CCCChhhcCCC------CCCEEEEEecchhc-cCchhheEeEe---cCH
Confidence            99999999999999999999999998764  23333332100      12378899999999 78999999998   789


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+...... ..+++.+                                  .+.++..+++          ...+++
T Consensus       270 ~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~~~  305 (404)
T 2o1b_A          270 DMIQALKKYQTHTNAGMFGA----------------------------------LQDAAIYALN----------HYDDFL  305 (404)
T ss_dssp             HHHHHHHHHHHHHCCCCCHH----------------------------------HHHHHHHHHH----------HCHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHH----------------------------------HHHHHHHHHh----------cCHHHH
Confidence            999998876552 3456666                                  4444444432          113457


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++++.++++++.+.+.|+++ ++.+.++++++|+|++++  .         +. +..+++..+++++||.+.||..|+.
T Consensus       306 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~---------~~-~~~~l~~~l~~~~gi~v~~g~~f~~  372 (404)
T 2o1b_A          306 EEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETP--P---------GY-DSEQFEQFLVQEKSILVAPGKPFGE  372 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECC--T---------TC-CHHHHHHHHHHHHCEECEESGGGCG
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCC--C---------CC-CHHHHHHHHHHHCCEEEeCchhhCc
Confidence            888999999999999999998 888888899999998775  1         22 3455566777788999999988764


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++.++++|++++++|
T Consensus       373 ------------------------------------------------~~~~--------~iRis~~~~~e~l~~~l~~l  396 (404)
T 2o1b_A          373 ------------------------------------------------NGNR--------YVRISLALDDQKLDEAAIRL  396 (404)
T ss_dssp             ------------------------------------------------GGTT--------EEEEECCSCTTHHHHHHHHH
T ss_pred             ------------------------------------------------CCCC--------eEEEEEcCCHHHHHHHHHHH
Confidence                                                            2223        99999998899999999999


Q ss_pred             HHHHH
Q psy13922        498 REFHE  502 (509)
Q Consensus       498 ~~~~~  502 (509)
                      +++++
T Consensus       397 ~~~l~  401 (404)
T 2o1b_A          397 TELAY  401 (404)
T ss_dssp             HGGGG
T ss_pred             HHHHH
Confidence            98874

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=5.4e-41  Score=345.33  Aligned_cols=349  Identities=15%  Similarity=0.232  Sum_probs=282.9

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+++++.+.+.+   ... .|++.  ..++++++++++.+.+|+++++++|++|+|+++++..++++++++
T Consensus        35 ~~~~~~~~~~v~~a~~~~~~~---~~~-~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~  108 (391)
T 3dzz_A           35 AEMDFKIAPEIMASMEEKLKV---AAF-GYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSP  108 (391)
T ss_dssp             SCCSSCCCHHHHHHHHHHHTT---CCC-CCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCT
T ss_pred             cCCCCCCCHHHHHHHHHHHhc---CcC-CCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCC
Confidence            55655  68999999998877   333 37766  489999999999999998888999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC-CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.+ ++++|.+|++.|++.+++.    ++++|++++|+||||.++|.+
T Consensus       109 gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~v~i~~p~nptG~~~~~~  180 (391)
T 3dzz_A          109 GD----QILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP----SVRMMVFCNPHNPIGYAWSEE  180 (391)
T ss_dssp             TC----EEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST----TEEEEEEESSBTTTTBCCCHH
T ss_pred             CC----eEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc----CceEEEEECCCCCCCcccCHH
Confidence            88    99999999999999999999999999986 3445679999999999842    799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.++.+.+. .+.++..+..+.     ..+++++.|+||.+ |++|+|+||++.  .++
T Consensus       181 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-----~d~~i~~~s~sK~~-g~~G~r~G~~~~--~~~  251 (391)
T 3dzz_A          181 EVKRIAELCAKHQVLLISDEIHGDLVLTDE-DITPAFTVDWDA-----KNWVVSLISPSKTF-NLAALHAACAII--PNP  251 (391)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGSCTTT-----GGGEEEEECSHHHH-TCTTTCCEEEEC--CSH
T ss_pred             HHHHHHHHHHHCCCEEEEecccccccCCCC-CceehhhcCccc-----cCcEEEEEeChhhc-cccchhheEEEE--CCH
Confidence            999999999999999999999999988643 334444332110     12488899999999 799999999982  349


Q ss_pred             HHHHHHHHhhh--cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        259 GVKAMLHKSIS--AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++.+.....  ...+++.+                                  ++.++..++.          ...++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~~  287 (391)
T 3dzz_A          252 DLRARAEESFFLAGIGEPNLL----------------------------------AIPAAIAAYE----------EGHDW  287 (391)
T ss_dssp             HHHHHHHHHHHHHTCSSCCTT----------------------------------HHHHHHHHHH----------HCHHH
T ss_pred             HHHHHHHHHHHhhccCCCCHH----------------------------------HHHHHHHHHh----------ccHHH
Confidence            99999987643  33455555                                  4444433322          12344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++++++.++++++.+.+.|++ +|++.+..+.+++++|++++..          +. +...+...+++++||.+.||..|
T Consensus       288 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~l~~~~gi~v~~g~~~  356 (391)
T 3dzz_A          288 LRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL----------GM-NAEDFCKYLREKTGLIISAGNGY  356 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGG----------CS-CHHHHHHHHHHHHCEECEESGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhc----------CC-CHHHHHHHHHHhCCEEEeCchhh
Confidence            788899999999999999999 8999999999999999877511          12 34555556667899999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        ++|++++.++++|+++++
T Consensus       357 ~~------------------------------------------------~~~~--------~iRis~~~~~~~i~~~l~  380 (391)
T 3dzz_A          357 RG------------------------------------------------NGHE--------FVRINLACPKELVIDGMQ  380 (391)
T ss_dssp             CT------------------------------------------------TGGG--------EEEEECCSCHHHHHHHHH
T ss_pred             CC------------------------------------------------CCCC--------EEEEEecCCHHHHHHHHH
Confidence            76                                                3333        999999999999999999


Q ss_pred             HHHHHHHHH
Q psy13922        496 KFREFHEEF  504 (509)
Q Consensus       496 ~l~~~~~~~  504 (509)
                      +|+++++++
T Consensus       381 ~l~~~l~~~  389 (391)
T 3dzz_A          381 RLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999998654

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.3e-41  Score=351.56  Aligned_cols=348  Identities=19%  Similarity=0.306  Sum_probs=274.7

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.|.+  |+.+++++.+.+..   ....+|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..+++++++
T Consensus        45 g~~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~  121 (412)
T 2x5d_A           45 GNPDGPTPPHIVEKLCTVAQR---EDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLD  121 (412)
T ss_dssp             CCCCSCCCHHHHHHHHHTC------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCC
Confidence            44443  68899998888776   224459888899999999999999888887788 7999999999999999999998


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|.++...++..|.+++.++.+++.+|.+|++.|++.++.     ++++|++++||||||.++|.+
T Consensus       122 ~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-----~~~~v~l~~p~nptG~~~~~~  192 (412)
T 2x5d_A          122 HGD----TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP-----KPRMMILGFPSNPTAQCVELD  192 (412)
T ss_dssp             TTC----EEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES-----CCSEEEEESSCTTTCCCCCHH
T ss_pred             CCC----EEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc-----CceEEEECCCCCCCCCcCCHH
Confidence            888    99999999999999999999999999988654566788999888765     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.++.+++. .+.++.++...      ..++++++|+||.+ |++|+|+||++   .++
T Consensus       193 ~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~------~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~  261 (412)
T 2x5d_A          193 FFERVVALAKQYDVMVVHDLAYADIVYDGW-KAPSIMQVPGA------KDIAVEFFTLSKSY-NMAGWRIGFMV---GNP  261 (412)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTTG------GGTEEEEEECC-CC-SCTTSCCEEEE---ECH
T ss_pred             HHHHHHHHHHHcCCEEEEeccccccccCCC-CCCChhhccCc------cCcEEEEecCcccc-CCcccceEEEE---cCH
Confidence            999999999999999999999999987542 23344333110      12488899999999 79999999998   689


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+..... ...+++.+                                  .+.++..+++.          ..+++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~----------~~~~~  297 (412)
T 2x5d_A          262 ELVSALARIKSYHDYGTFTP----------------------------------LQVAAIAALEG----------DQQCV  297 (412)
T ss_dssp             HHHHHHHHHHHHHCCCCCHH----------------------------------HHHHHHHHHHS----------CSHHH
T ss_pred             HHHHHHHHHHhhhccCCCHH----------------------------------HHHHHHHHHhC----------CHHHH
Confidence            99999887655 23455666                                  44444333321          11347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCC--CCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGK--CPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      +++++.++++++.+.+.|+++ ++.+.++++++|+|++++  .         ++  .+...++..+++++||.+.||..|
T Consensus       298 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~---------~~~~~~~~~~~~~l~~~~gi~v~~g~~f  365 (412)
T 2x5d_A          298 RDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIP--E---------PYAHLGSLEFAKKLLQDAKVSVSPGIGF  365 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECC--T---------TTGGGCHHHHHHHHHHHHCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcC--C---------ccCCCCHHHHHHHHHHHCCEEEeCchhh
Confidence            888899999999999999988 888888899999997774  1         11  134555666777789999999887


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        ++|++++.++++|+++++
T Consensus       366 ~~------------------------------------------------~~~~--------~iRis~~~~~~~l~~~l~  389 (412)
T 2x5d_A          366 GD------------------------------------------------YGDD--------HVRFALIENRDRLRQAVR  389 (412)
T ss_dssp             CG------------------------------------------------GGTT--------EEEEECCSCHHHHHHHHH
T ss_pred             CC------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHH
Confidence            54                                                2223        999999999999999999


Q ss_pred             HHHHHHHHH
Q psy13922        496 KFREFHEEF  504 (509)
Q Consensus       496 ~l~~~~~~~  504 (509)
                      +|.++++++
T Consensus       390 ~l~~~l~~~  398 (412)
T 2x5d_A          390 GIKAMFRAD  398 (412)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=7.9e-41  Score=349.32  Aligned_cols=333  Identities=20%  Similarity=0.290  Sum_probs=266.3

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCC-------CCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPAD-------WQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS  120 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~  120 (509)
                      +|++..|.+++|+++++++.+.+|+..+       +++|++|+|+++++..++++++++||    .|+++.|+|.++...
T Consensus        73 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~  148 (425)
T 2r2n_A           73 QYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD----NVLLDEPAYSGTLQS  148 (425)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHH
Confidence            4999999999999999999988887764       37999999999999999999999998    999999999999999


Q ss_pred             HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh-------ccCCceEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHCCc
Q psy13922        121 LAEFNMEQIGYYLDESKQWGLPISELERSITEAR-------KHCNPRAIVI-INPGNPTGQVLTKENIQDIIKFAHREKL  192 (509)
Q Consensus       121 ~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~-------~~~~~~~ivi-~~p~NPtG~~~s~~~l~~l~~ia~~~~i  192 (509)
                      ++..|++++.++.+++   ++|++.|++.+++..       ...++++|++ ++||||||.++|.+++++|+++|++||+
T Consensus       149 ~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~  225 (425)
T 2r2n_A          149 LHPLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF  225 (425)
T ss_dssp             HGGGTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence            9999999999998754   589999999987311       0125888877 7999999999999999999999999999


Q ss_pred             EEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cc
Q psy13922        193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AM  271 (509)
Q Consensus       193 ~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~  271 (509)
                      +||+||+|.++.+++. .+.++.++..       ..++++++||||.+ | +|+|+||++   .++++++.+..... ..
T Consensus       226 ~li~De~~~~~~~~g~-~~~~~~~~~~-------~~~~i~~~s~SK~~-~-~GlRiG~~~---~~~~l~~~l~~~~~~~~  292 (425)
T 2r2n_A          226 LIIEDDPYYFLQFNKF-RVPTFLSMDV-------DGRVIRADSFSKII-S-SGLRIGFLT---GPKPLIERVILHIQVST  292 (425)
T ss_dssp             EEEEECTTGGGBSSSS-CCCCTGGGCT-------TSCEEEEEESTTTT-C-STTCCEEEE---EEHHHHHHHHHHHHTTT
T ss_pred             EEEEECCcccccCCCC-CCCCccccCC-------CCCEEEEccchhhc-c-CccceEEEe---cCHHHHHHHHHHHHHhc
Confidence            9999999999988643 3344444321       23589999999999 7 999999998   68899999987665 34


Q ss_pred             cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy13922        272 LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMV  351 (509)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  351 (509)
                      .+++.+                                  .|.++..+++.     ..-..+.++++++++.++++++.+
T Consensus       293 ~~~~~~----------------------------------~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~l  333 (425)
T 2r2n_A          293 LHPSTF----------------------------------NQLMISQLLHE-----WGEEGFMAHVDRVIDFYSNQKDAI  333 (425)
T ss_dssp             CSSCHH----------------------------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHH----------------------------------HHHHHHHHHHh-----cccchHHHHHHHHHHHHHHHHHHH
Confidence            566666                                  45444444330     000224466889999999999999


Q ss_pred             HHHHhc-CCCC-eeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchh
Q psy13922        352 ADTFNS-IEGM-SCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVW  429 (509)
Q Consensus       352 ~~~L~~-~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~  429 (509)
                      .+.|++ +|++ .+..+.+++|+|++++            +..++..++...+.++||.+.||..|+....         
T Consensus       334 ~~~L~~~~~~~~~~~~p~~g~~~~~~~~------------~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~---------  392 (425)
T 2r2n_A          334 LAAADKWLTGLAEWHVPAAGMFLWIKVK------------GINDVKELIEEKAVKMGVLMLPGNAFYVDSS---------  392 (425)
T ss_dssp             HHHHHHHCSSSEEECCCSBSSEEEEEET------------TCSCCHHHHHTHHHHTTEECEEGGGGSSSTT---------
T ss_pred             HHHHHHHCCCCeEEeCCCceEEEEEEeC------------CCCCHHHHHHHHHHHCCcEEechhhhcCCCC---------
Confidence            999988 6776 4667899999998775            1113444446677789999999998876100         


Q ss_pred             hhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHH
Q psy13922        430 WRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~  504 (509)
                                                          .+.+        ++||+++ .++++|++++++|++++++.
T Consensus       393 ------------------------------------~~~~--------~iRis~~~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          393 ------------------------------------APSP--------YLRASFSSASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             ------------------------------------SCCC--------EEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------CCCC--------EEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence                                                1223        9999998 89999999999999998653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=1.2e-40  Score=343.00  Aligned_cols=359  Identities=18%  Similarity=0.259  Sum_probs=282.2

Q ss_pred             HHHHHHHhhcCCCCC----CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cE
Q psy13922          7 LSLQVLALVSLPQLF----DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV   79 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i   79 (509)
                      .++.+..+...+.++    +.|.  .|+.+.+++.+.+..   . ...|++..|..++|+++++++.+.+|.+++++ +|
T Consensus        19 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~---~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v   94 (386)
T 1u08_A           19 IFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQ---G-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDI   94 (386)
T ss_dssp             HHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTE
T ss_pred             HHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHHh---h-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCE
Confidence            344444444333332    4443  468999999998876   2 34598888899999999999998888888898 99


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCc
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNP  159 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~  159 (509)
                      ++|+|+++++..++++++++||    .|+++.|+|.++...++..|.+++.++.+++ +|.+|++.|++.+++     ++
T Consensus        95 ~~~~g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~-----~~  164 (386)
T 1u08_A           95 TVTAGATEALYAAITALVRNGD----EVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLSE-----RT  164 (386)
T ss_dssp             EEESSHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCCT-----TE
T ss_pred             EEcCChHHHHHHHHHHhCCCCC----EEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhcc-----cC
Confidence            9999999999999999988888    9999999999999999999999999998754 578999999999865     79


Q ss_pred             eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      ++|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+...      ..++++++|+||.
T Consensus       165 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~------~~~~i~~~s~sK~  237 (386)
T 1u08_A          165 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ-GHASVLAHPQL------RERAVAVSSFGKT  237 (386)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS-CCCCGGGSHHH------HTTEEEEEEHHHH
T ss_pred             EEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC-CCcChhcccCc------cCcEEEEecchhh
Confidence            9999999999999999999999999999999999999999999988643 23333332111      1237889999999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      + |++|+|+||++   .++++++.+..... ..++.+.+                                  .+.++..
T Consensus       238 ~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~  279 (386)
T 1u08_A          238 Y-HMTGWKVGYCV---APAPISAEIRKVHQYLTFSVNTP----------------------------------AQLALAD  279 (386)
T ss_dssp             T-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSCCHH----------------------------------HHHHHHH
T ss_pred             c-CCcccceEEEE---cCHHHHHHHHHHHHhhccCCChH----------------------------------HHHHHHH
Confidence            9 78999999998   78999998887654 23455555                                  3444433


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                      +++          ...++++++++.++++++.+.+.|+++ |+.+..+++++++|++++-.          +..+..++.
T Consensus       280 ~l~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~  338 (386)
T 1u08_A          280 MLR----------AEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAV----------STLDDVEFC  338 (386)
T ss_dssp             HHH----------HCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTT----------CCSCHHHHH
T ss_pred             HHh----------CCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCC----------CCCCHHHHH
Confidence            332          112347788999999999999999998 88888888899999877511          001345555


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ..+++++||.+.||..|...+                                              .+.+        +
T Consensus       339 ~~l~~~~gi~v~~g~~f~~~~----------------------------------------------~~~~--------~  364 (386)
T 1u08_A          339 QWLTQEHGVAAIPLSVFCADP----------------------------------------------FPHK--------L  364 (386)
T ss_dssp             HHHHHHSCEECEEGGGGCSSC----------------------------------------------CCSC--------E
T ss_pred             HHHHHhCCEEEeCchHhCCCC----------------------------------------------CCCC--------E
Confidence            667778899999998776410                                              1122        8


Q ss_pred             EEEEeecChHHHHHHHHHHHH
Q psy13922        479 FRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       479 ~Rls~~~~~~~i~~~~~~l~~  499 (509)
                      +|++++.++++|++++++|++
T Consensus       365 iRis~~~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          365 IRLCFAKKESTLLAAAERLRQ  385 (386)
T ss_dssp             EEEECCSCHHHHHHHHHHHTT
T ss_pred             EEEEEcCCHHHHHHHHHHHhh
Confidence            999999999999999999864

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=9.5e-41  Score=342.07  Aligned_cols=339  Identities=18%  Similarity=0.233  Sum_probs=271.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+++++.+.+.     ...+|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++++++++
T Consensus        31 ~~~~~~~~~~v~~a~~~~~~-----~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~  105 (376)
T 3ezs_A           31 GEPQFETPKFIQDALKNHTH-----SLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFD  105 (376)
T ss_dssp             CCCCSCCCHHHHHHHHTTGG-----GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCHHHHHHHHHhhh-----hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCC
Confidence            45554  6788888877763     2455999889999999999999998898788999999999999999999999998


Q ss_pred             --CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 --VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 --gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                        ||    +|+++.|+|.++...++..|.+++.++.+++.++.+   .+++.+.+     ++++|++++||||||.+++.
T Consensus       106 ~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~l~~~~~~-----~~~~v~~~~p~nptG~~~~~  173 (376)
T 3ezs_A          106 YQNP----TIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP---SLNEKELQ-----EVDLVILNSPNNPTGRTLSL  173 (376)
T ss_dssp             CSSC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC---CCCHHHHH-----HCSEEEECSSCTTTCCCCCH
T ss_pred             CCCC----EEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch---hHHhhhcc-----CCCEEEEcCCCCCcCCCCCH
Confidence              88    999999999999999999999999999987654444   66667766     68999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|+++|+++|+||+|.++.+++  ...++.......+. +...++++++|+||.+ |++|+|+||++   .+
T Consensus       174 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~  246 (376)
T 3ezs_A          174 EELISWVKLALKHDFILINDECYSEIYENT--PPPSLLEACMLAGN-EAFKNVLVIHSLSKRS-SAPGLRSGFIA---GD  246 (376)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBSSS--CCCCHHHHHHHTTC-TTCTTEEEEEESTTTT-TCGGGCCEEEE---EC
T ss_pred             HHHHHHHHHHHHcCcEEEEEccchhhccCC--CCCCHHHccccccc-cccCcEEEEecchhcc-CCccceeEEEe---eC
Confidence            999999999999999999999999998875  44555554321110 0123488899999999 79999999998   79


Q ss_pred             HHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++++.+..... ...+.+.+                                  .+.++..+++.           .++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~-----------~~~  281 (376)
T 3ezs_A          247 SRLLEKYKAFRAYLGYTSANA----------------------------------IQKASEAAWLD-----------DRH  281 (376)
T ss_dssp             HHHHHHHHHHHTTTCCCCCHH----------------------------------HHHHHHHHHHC-----------SHH
T ss_pred             HHHHHHHHHHHhhhcCCCChH----------------------------------HHHHHHHHHhC-----------cHH
Confidence            999999987765 24456666                                  44444444331           123


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      +++.++.++++++.+.+.|+   ++.  .+.+++++|++++               +...++..+++++||.+.||..|+
T Consensus       282 ~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~~~  341 (376)
T 3ezs_A          282 AEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ---------------NGENFAKTLYQNEGIITLPALYLG  341 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS---------------CHHHHHHHHHHHHCCBCEEGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC---------------CHHHHHHHHHHhCCEEEeCcHHhC
Confidence            78888999999999999987   444  6788999997765               234445666666899999999887


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEK  496 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~  496 (509)
                      ...                                              .+.+        ++||+++.++++|++++++
T Consensus       342 ~~~----------------------------------------------~~~~--------~iRis~~~~~~~i~~~l~~  367 (376)
T 3ezs_A          342 RNR----------------------------------------------IGAD--------YVRLALVYDTPLLEKPLEI  367 (376)
T ss_dssp             STT----------------------------------------------TTTT--------EEEEECCSCHHHHHHHHHH
T ss_pred             CCC----------------------------------------------CCCC--------eEEEEEcCCHHHHHHHHHH
Confidence            410                                              2223        9999999999999999999


Q ss_pred             HHHHHHH
Q psy13922        497 FREFHEE  503 (509)
Q Consensus       497 l~~~~~~  503 (509)
                      |++++++
T Consensus       368 l~~~l~~  374 (376)
T 3ezs_A          368 IETYREN  374 (376)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998854

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=1.1e-40  Score=344.51  Aligned_cols=352  Identities=18%  Similarity=0.292  Sum_probs=279.2

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+.+++.+.+..   . ...|++.  ..++|+++++++.+++|+++++++|++|+|+++++..++++++++
T Consensus        39 ~~~~~~~~~~v~~a~~~~~~~---~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~  112 (399)
T 1c7n_A           39 ADMEFKNPPELIEGLKKYLDE---T-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKP  112 (399)
T ss_dssp             SSCSSCCCHHHHHHHHHHHHH---C-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCT
T ss_pred             cCCCCCCCHHHHHHHHHHHhc---C-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCC
Confidence            44443  67899999998875   2 3348765  699999999999988888788899999999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC-CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      ||    +|+++.|+|.++...++..|.+++.+|.+ ++++|.+|++.|++.+++.    ++++|++++|+||||.++|.+
T Consensus       113 gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~  184 (399)
T 1c7n_A          113 GD----GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK----NNKALLFCSPHNPVGRVWKKD  184 (399)
T ss_dssp             TC----EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT----TEEEEEEESSBTTTTBCCCHH
T ss_pred             CC----EEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC----CCcEEEEcCCCCCCCcCcCHH
Confidence            88    99999999999999999999999999986 3334679999999999732    789999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.++.+++. .+.++..+..+.     ..+++++.|+||.+ |++|+|+||+++  .++
T Consensus       185 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~  255 (399)
T 1c7n_A          185 ELQKIKDIVLKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQL-----ADKTITFTAPSKTF-NIAGMGMSNIII--KNP  255 (399)
T ss_dssp             HHHHHHHHHHHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HTTEEEEECSHHHH-TCGGGCCEEEEC--CCH
T ss_pred             HHHHHHHHHHHcCCEEEEEccccccccCCC-CcccHHHcCccc-----cCcEEEEEeChhhc-cccchheEEEEE--CCH
Confidence            999999999999999999999999987643 233443332111     12388899999999 799999999983  357


Q ss_pred             HHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        259 GVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++.+......+  .+++.+                                  ++.++..+++          ...++
T Consensus       256 ~~~~~l~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~~  291 (399)
T 1c7n_A          256 DIRERFTKSRDATSGMPFTTL----------------------------------GYKACEICYK----------ECGKW  291 (399)
T ss_dssp             HHHHHHHHHHHHTTCCCCCHH----------------------------------HHHHHHHHHH----------HCHHH
T ss_pred             HHHHHHHHHHhhcccCCCCHH----------------------------------HHHHHHHHHh----------CChHH
Confidence            8999888765533  245666                                  4444443332          11345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++++++.++++++.+.+.|++ +|++.+.++.+++++|++++.          .+. +...+...+++++||.+.||..|
T Consensus       292 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~l~~~~gi~v~~g~~~  360 (399)
T 1c7n_A          292 LDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRA----------LKM-DHKAMEEFMIHKAQIFFDEGYIF  360 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGG----------GCC-CHHHHHHHHHHTTCCCCEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEccc----------CCC-CHHHHHHHHHHhCCEEEeCcccc
Confidence            788899999999999999998 889988889999999977741          011 24455555656889999999877


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        ++|++++.++++|+++++
T Consensus       361 ~~------------------------------------------------~~~~--------~iRis~~~~~~~l~~~l~  384 (399)
T 1c7n_A          361 GD------------------------------------------------GGIG--------FERINLAAPSSVIQESLE  384 (399)
T ss_dssp             CG------------------------------------------------GGTT--------EEEEECCSCHHHHHHHHH
T ss_pred             CC------------------------------------------------CCCC--------eEEEEeccCHHHHHHHHH
Confidence            64                                                2223        999999988999999999


Q ss_pred             HHHHHHHHHHhh
Q psy13922        496 KFREFHEEFLAK  507 (509)
Q Consensus       496 ~l~~~~~~~~~~  507 (509)
                      +|++++++++++
T Consensus       385 ~l~~~l~~~~~~  396 (399)
T 1c7n_A          385 RLNKALKDLKNR  396 (399)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-40  Score=341.55  Aligned_cols=339  Identities=20%  Similarity=0.292  Sum_probs=272.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+.+  |+.+.+++.+.+..   ....+|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..+++++++
T Consensus        33 ~~~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~  109 (376)
T 2dou_A           33 GSTDLPPPEAPLKALAEALND---PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTE  109 (376)
T ss_dssp             CCCCCCCCHHHHHHHHHHTTC---GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHHHhC---CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcC
Confidence            44443  78899999888876   2345698877889999999999998889877777 999999999999999999998


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|.++...++..|.+++.+|.  +.+|.+|++.|++.++.     ++++|++++||||||.++|.+
T Consensus       110 ~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~  178 (376)
T 2dou_A          110 PED----LLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWR-----EAKVLLLNYPNNPTGAVADWG  178 (376)
T ss_dssp             TTC----EEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHH-----HEEEEEECSSCTTTCCCCCHH
T ss_pred             CCC----EEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhcc-----CceEEEECCCCCCcCccCCHH
Confidence            888    9999999999999999999999999998  33567899999999976     699999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.++.+++  ...++......      ..++++++|+||.+ |++|+|+||++   .++
T Consensus       179 ~l~~l~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~------~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~  246 (376)
T 2dou_A          179 YFEEALGLARKHGLWLIHDNPYVDQVYEG--EAPSPLALPGA------KERVVELFSLSKSY-NLAGFRLGFAL---GSE  246 (376)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTGGGBSSS--CCCCGGGSTTG------GGTEEEEEEHHHHH-TCGGGCCEEEE---ECH
T ss_pred             HHHHHHHHHHHcCCEEEEEccchhcccCC--CCCChhhcCCC------CCcEEEEecchhhc-CChhheeEEEe---cCH
Confidence            99999999999999999999999998764  22233222110      22488899999999 78999999998   799


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+...... ..+.+.+                                  .+.++..+++.          ..+++
T Consensus       247 ~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~----------~~~~~  282 (376)
T 2dou_A          247 EALARLERVKGVIDFNQYAG----------------------------------VLRMGVEALKT----------PKEVV  282 (376)
T ss_dssp             HHHHHHHHHHHHHCCCSCHH----------------------------------HHHHHHHHHTS----------CHHHH
T ss_pred             HHHHHHHHHHHhcccCCCHH----------------------------------HHHHHHHHHhC----------cHHHH
Confidence            999999876552 3345555                                  44444444431          12347


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|+++  +.+.++.+++++|++++  .         +. +...+...++++ ||.+.||..|+.
T Consensus       283 ~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~l~~~-gi~v~~g~~f~~  347 (376)
T 2dou_A          283 RGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLP--E---------GV-DDLEFGLRLVER-GVALAPGRGFGP  347 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECC--T---------TC-CHHHHHHHHHHT-TEECEEGGGGCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECC--C---------CC-CHHHHHHHHHHC-CEEEcCchhhCC
Confidence            888999999999999999887  77778889999997775  1         11 234555555555 999999987764


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++.++++|++++++|
T Consensus       348 ------------------------------------------------~~~~--------~~Ris~~~~~~~i~~~l~~l  371 (376)
T 2dou_A          348 ------------------------------------------------GGKG--------FVRIALVRPLEELLEAAKRI  371 (376)
T ss_dssp             ------------------------------------------------GGTT--------EEEEECCSCHHHHHHHHHHH
T ss_pred             ------------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHH
Confidence                                                            2223        99999998899999999999


Q ss_pred             HHHH
Q psy13922        498 REFH  501 (509)
Q Consensus       498 ~~~~  501 (509)
                      ++++
T Consensus       372 ~~~l  375 (376)
T 2dou_A          372 REAL  375 (376)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            8764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=9.3e-41  Score=346.94  Aligned_cols=377  Identities=21%  Similarity=0.270  Sum_probs=287.8

Q ss_pred             HHHHHHHHhhcCCCCC----CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-c
Q psy13922          6 SLSLQVLALVSLPQLF----DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-D   78 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~   78 (509)
                      +.++.+..+...++.+    +.+.  .|+.+.+++.+++..   . ...|++..|..++|+++++++.+.+|.+++++ +
T Consensus        13 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~---~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~   88 (411)
T 2o0r_A           13 TVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAG---G-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETE   88 (411)
T ss_dssp             CHHHHHHHHHHTTTCEESSCSSCSSCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTS
T ss_pred             cHHHHHHHHhhcCCeeeccCcCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCce
Confidence            3556666666555543    4444  468999999999876   2 34599888899999999999998889888888 9


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCC-CCCCCCHHHHHHHHHhhhccC
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES-KQWGLPISELERSITEARKHC  157 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~  157 (509)
                      |++|+|+++++..++++++++||    .|+++.|+|.++...++..|.+++.++.+++ .+|.+|++.|++.+++     
T Consensus        89 v~~t~g~~~al~~~~~~~~~~gd----~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----  159 (411)
T 2o0r_A           89 VLVTVGATEAIAAAVLGLVEPGS----EVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP-----  159 (411)
T ss_dssp             EEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT-----
T ss_pred             EEEeCCHHHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc-----
Confidence            99999999999999999998888    9999999999999999999999999998654 3467999999999876     


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..      ...+++++.|+|
T Consensus       160 ~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~------~~~~~i~~~s~s  232 (411)
T 2o0r_A          160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA-RHLPLAGFDG------MAERTITISSAA  232 (411)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSTT------TGGGEEEEEEHH
T ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcChhhccC------CCCCEEEEeech
Confidence            799999999999999999999999999999999999999999999987642 2334333210      022478899999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM  316 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  316 (509)
                      |.+ |++|+|+||++   .++++++.+..... ..++.+.+                                  .+.++
T Consensus       233 K~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~  274 (411)
T 2o0r_A          233 KMF-NCTGWKIGWAC---GPAELIAGVRAAKQYLSYVGGAP----------------------------------FQPAV  274 (411)
T ss_dssp             HHT-TCTTTCEEEEE---CCHHHHHHHHHHHHHHTSCCCTT----------------------------------HHHHH
T ss_pred             hhc-CCccceEEEEe---eCHHHHHHHHHHHhhccCCCChH----------------------------------HHHHH
Confidence            999 79999999998   68999998877654 23344444                                  34444


Q ss_pred             hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      ..+++          ...++++++++.++++++.+.+.|+++ |+.+..+.+++++|+++..          .+..+..+
T Consensus       275 ~~~l~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~----------~~~~~~~~  333 (411)
T 2o0r_A          275 ALALD----------TEDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRP----------LGYDDSTE  333 (411)
T ss_dssp             HHHHH----------HCHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGG----------GTCCCHHH
T ss_pred             HHHHh----------CChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCC----------CCCCCHHH
Confidence            33332          113447888999999999999999988 8888888899999987751          01113455


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ++..+++++||.+.||..|.....                          .|.     +.+.        .      .+.
T Consensus       334 ~~~~l~~~~gi~v~~g~~f~~~~~--------------------------~~~-----~~~~--------~------~~~  368 (411)
T 2o0r_A          334 FCAALPEKVGVAAIPMSAFCDPAA--------------------------GQA-----SQQA--------D------VWN  368 (411)
T ss_dssp             HHHHHHHHHSEECEEGGGGSCCC-----------------------------------------------C------CGG
T ss_pred             HHHHHHHhCCEEEcChhhhCCCcc--------------------------ccc-----cccc--------c------CCC
Confidence            566677788999999988743100                          000     0000        0      012


Q ss_pred             eeEEEEeecChHHHHHHHHHHHHHHHHHHh
Q psy13922        477 YHFRTTILPQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       477 ~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      .++||+++.++++|++++++|++++++...
T Consensus       369 ~~iRis~~~~~e~i~~~~~~l~~~~~~~~~  398 (411)
T 2o0r_A          369 HLVRFTFCKRDDTLDEAIRRLSVLAERPAT  398 (411)
T ss_dssp             GCEEEECCSCHHHHHHHHHHHGGGGC----
T ss_pred             CeEEEEecCCHHHHHHHHHHHHHHHhccCc
Confidence            289999999999999999999998765543

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=6.1e-41  Score=348.57  Aligned_cols=350  Identities=20%  Similarity=0.340  Sum_probs=274.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhh------hcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISR------RDGQPADWQDVILSAGASDGIKSVLKLLIEDV  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~------~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g  100 (509)
                      |+.+++++.+.+..   ....+|++..|..++|+++++++++      .+|+++++++|++|+|+++++..++++++++|
T Consensus        52 ~~~v~~a~~~~~~~---~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~g  128 (416)
T 1bw0_A           52 SAAQIKKLKEAIDS---QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAG  128 (416)
T ss_dssp             CHHHHHHHHHHHHT---TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHhhC---CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCC
Confidence            67899999999876   3345698888999999999999983      25666788999999999999999999999888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++.|+|.++...++..|++++.++.+++.+|.+|++.|++.+++     +++++++++|+||||.+++.+++
T Consensus       129 d----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~l  199 (416)
T 1bw0_A          129 D----YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD-----KTKLLIVTNPSNPCGSNFSRKHV  199 (416)
T ss_dssp             C----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHH
T ss_pred             C----EEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc-----CCeEEEEeCCCCCCCcccCHHHH
Confidence            8    99999999999999999999999999987655678999999999876     68999999999999999999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCC---ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGS---KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      ++|+++|+++|++||+||+|.++.+++..   .+.++..+.       ...++++++|+||.+ |++|+|+||++.  .+
T Consensus       200 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~Glr~G~~~~--~~  269 (416)
T 1bw0_A          200 EDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE-------TTVPRVILGGTAKNL-VVPGWRLGWLLY--VD  269 (416)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC-------CSCCEEEEEESTTTT-SCGGGCCEEEEE--EC
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc-------CCCcEEEEecchhhC-CCCCceEEEEEe--eC
Confidence            99999999999999999999998876431   223332221       123488899999999 689999999983  34


Q ss_pred             H-----HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        258 P-----GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       258 ~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      +     .+...+.......++++.+                                  .+.++..+++.         .
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~---------~  306 (416)
T 1bw0_A          270 PHGNGPSFLEGLKRVGMLVCGPCTV----------------------------------VQAALGEALLN---------T  306 (416)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTCSCHH----------------------------------HHHHHHHHHHS---------S
T ss_pred             chhhHHHHHHHHHHHhccccCCCcH----------------------------------HHHHHHHHHhc---------c
Confidence            3     2333333332223456666                                  44444444320         0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      ..+++++.++.++++++.+.+.|+++|++.+..+.+++|+|++++...       ..+..+...++..+++++||.++||
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~gi~v~~g  379 (416)
T 1bw0_A          307 PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-------YRDIKTDVEFFEKLLEEENVQVLPG  379 (416)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-------BSSCCSHHHHHHHHHHHHCEECEEG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH-------cCCCCCHHHHHHHHHHHCCEEEecc
Confidence            123477888899999999999999988888887888999997664110       0011234555566777899999999


Q ss_pred             CCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHH
Q psy13922        413 AGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKA  492 (509)
Q Consensus       413 ~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~  492 (509)
                      ..|+.                                                ++          ++|++++.++++|++
T Consensus       380 ~~f~~------------------------------------------------~~----------~iRis~~~~~e~l~~  401 (416)
T 1bw0_A          380 TIFHA------------------------------------------------PG----------FTRLTTTRPVEVYRE  401 (416)
T ss_dssp             GGGTC------------------------------------------------TT----------EEEEECCSCHHHHHH
T ss_pred             cccCC------------------------------------------------CC----------eEEEEecCCHHHHHH
Confidence            87765                                                34          899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy13922        493 MLEKFREFHEEFLA  506 (509)
Q Consensus       493 ~~~~l~~~~~~~~~  506 (509)
                      ++++|.++++++.+
T Consensus       402 ~l~~l~~~l~~~~~  415 (416)
T 1bw0_A          402 AVERIKAFCQRHAA  415 (416)
T ss_dssp             HHHHHHHHHHHHBC
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999987543

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=1.2e-40  Score=347.50  Aligned_cols=348  Identities=14%  Similarity=0.214  Sum_probs=283.8

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      .+++.+  |+.+++++.+.+..   ..+. |++..  .++++++++++.+.+|+++++++|++|+|+++|++.+++.+++
T Consensus        68 ~~~~~~~~~~~v~~a~~~~~~~---~~~~-y~~~~--~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~  141 (421)
T 3l8a_A           68 VADMDFLPVPEIKEAIINYGRE---HIFG-YNYFN--DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE  141 (421)
T ss_dssp             SSCCCSCCCHHHHHHHHHHHHH---CCSS-CBCCC--HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC
T ss_pred             cCCCCCCCCHHHHHHHHHHHhc---CCcC-CCCCC--HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC
Confidence            356665  68999999999886   3333 76654  8899999999999999888899999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC-CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      +||    +|+++.|+|.++...++..|.+++.+|.+ .+++|.+|++.|++.+++.    ++++|++++|+||||.++++
T Consensus       142 ~gd----~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~----~~~~vil~~p~nptG~~~~~  213 (421)
T 3l8a_A          142 KGD----AVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN----NVKIYLLCSPHNPGGRVWDN  213 (421)
T ss_dssp             TEE----EEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT----TEEEEEEESSBTTTTBCCCH
T ss_pred             CCC----EEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc----CCeEEEECCCCCCCCCcCCH
Confidence            888    99999999999999999999999999987 5556789999999999842    79999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|+++|+++|+||+|.++.+++. .+.++..+.++.     ..+++.+.|+||.+ |++|+|+||+++  .+
T Consensus       214 ~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~-g~~G~~~G~~~~--~~  284 (421)
T 3l8a_A          214 DDLIKIAELCKKHGVILVSDEIHQDLALFGN-THHSLNTLDASY-----KDFTIILSSATKTF-NIAGTKNSFAII--QN  284 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCTTG-----GGTEEEEECSHHHH-TCGGGCCEEEEC--CS
T ss_pred             HHHHHHHHHHHHcCCEEEEEccccccccCCC-CCccHHHcCchh-----cCcEEEEEeChhhc-cCchhheEeEEc--CC
Confidence            9999999999999999999999999998753 344444432221     13478899999999 789999999983  34


Q ss_pred             HHHHHHHHHhhh--cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        258 PGVKAMLHKSIS--AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       258 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      +++++.+.....  .+.+++.+                                  ++.++..+++          ...+
T Consensus       285 ~~l~~~~~~~~~~~~~~~~n~~----------------------------------~~~a~~aal~----------~~~~  320 (421)
T 3l8a_A          285 ESLRRKFQYRQLANNQHEVPTV----------------------------------GMIATQAAFQ----------YGKP  320 (421)
T ss_dssp             HHHHHHHHHHHHHTTCSCCCHH----------------------------------HHHHHHHHHH----------HCHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHH----------------------------------HHHHHHHHHh----------ccHH
Confidence            899999887653  34456666                                  4444443322          2234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      +++++++.++++++.+.+.|+++|++.+..+++++++|++++.          .+. +..++...+++++||.+.||..|
T Consensus       321 ~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~----------~~~-~~~~l~~~l~~~~gi~v~~g~~f  389 (421)
T 3l8a_A          321 WLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSA----------YAI-AQPQLSEKLQNEAKVVLNDGAHF  389 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGG----------GTC-CTTHHHHHHHHTTCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccc----------cCC-CHHHHHHHHHHhCCEEEECchhh
Confidence            5788899999999999999988789999999999999987752          122 23444566777889999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        ++||+++.++++|+++++
T Consensus       390 ~~------------------------------------------------~~~~--------~iRi~~~~~~~~i~~~l~  413 (421)
T 3l8a_A          390 GK------------------------------------------------EGKY--------FARLNVATPKNTVQEALS  413 (421)
T ss_dssp             CG------------------------------------------------GGTT--------EEEEECCSCHHHHHHHHH
T ss_pred             CC------------------------------------------------CCCC--------EEEEEecCCHHHHHHHHH
Confidence            76                                                3434        999999999999999999


Q ss_pred             HHHHHHH
Q psy13922        496 KFREFHE  502 (509)
Q Consensus       496 ~l~~~~~  502 (509)
                      +|+++++
T Consensus       414 ~l~~~l~  420 (421)
T 3l8a_A          414 RIISVFG  420 (421)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            9998875

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=2e-40  Score=343.93  Aligned_cols=345  Identities=26%  Similarity=0.454  Sum_probs=278.6

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..   .. ..|++..|..++|+++++++...+|+++++++|++|+|+++++..++++++++||    
T Consensus        55 ~~~~v~~a~~~~~~~---~~-~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd----  126 (406)
T 1xi9_A           55 PPEHMKEAYCKAIKE---GH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGD----  126 (406)
T ss_dssp             CCHHHHHHHHHHHHT---TC-CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTC----
T ss_pred             CCHHHHHHHHHHHhc---CC-CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCC----
Confidence            468899999888876   22 3598888899999999999999889888899999999999999999999988888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|.++...++..|.+++.++.+++.+|.+|++.|++.+++     ++++|++++|+||||.+++.+++++|++
T Consensus       127 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~  201 (406)
T 1xi9_A          127 EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-----RTKAIAVINPNNPTGALYDKKTLEEILN  201 (406)
T ss_dssp             EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-----CceEEEEECCCCCCCCCcCHHHHHHHHH
Confidence            99999999999999999999999999987645678899999999876     7999999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCce-eEEEEecccccCCCCCCeeEEEeeecCCH----HH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME-LASFMSCSKGYMGECGLRGGYSEVINLDP----GV  260 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~G~~Glr~G~v~~~~~~~----~~  260 (509)
                      +|+++|+++|+||+|.++.+++  ...++..+.        ..+ +++++|+||.+ |++|+|+||++ ++.++    ++
T Consensus       202 ~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~--------~~~~~i~~~s~sK~~-~~~G~r~G~~~-~~~~~~~~~~l  269 (406)
T 1xi9_A          202 IAGEYEIPVISDEIYDLMTYEG--EHISPGSLT--------KDVPVIVMNGLSKVY-FATGWRLGYMY-FVDPENKLSEV  269 (406)
T ss_dssp             HHHHHTCCEEEECTTTTCBSSS--CCCCHHHHC--------SSSCEEEEEESTTTT-CCGGGCCEEEE-EECTTCTTHHH
T ss_pred             HHHHcCCEEEEEcCccccccCC--CCCCHHHcC--------CCceEEEEecccccc-CCCccEEEEEE-EecCchhHHHH
Confidence            9999999999999999998742  344555441        123 67889999999 78999999997 22466    88


Q ss_pred             HHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHH
Q psy13922        261 KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSV  340 (509)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  340 (509)
                      ++.+.......++++.+                                  .+.++..+++.          ..++++++
T Consensus       270 ~~~l~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~----------~~~~~~~~  305 (406)
T 1xi9_A          270 REAIDRLARIRLCPNTP----------------------------------AQFAAIAGLTG----------PMDYLKEY  305 (406)
T ss_dssp             HHHHHHHHHHTCCSCSH----------------------------------HHHHHHHHHHS----------CCHHHHHH
T ss_pred             HHHHHHHHHhhcCCCHH----------------------------------HHHHHHHHHhC----------CcHHHHHH
Confidence            88887765422455555                                  34444433320          11236778


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCC
Q psy13922        341 LDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPG  420 (509)
Q Consensus       341 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~  420 (509)
                      ++.++++++.+.+.|+++|++.+..+.+++++|++++..         .+. +..++...+++++||.+.||..|+.   
T Consensus       306 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~l~~~l~~~~gi~v~~g~~f~~---  372 (406)
T 1xi9_A          306 MKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG---------PWK-NDKEFVLDVLHNAHVLFVHGSGFGE---  372 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSC---------SCS-SHHHHHHHHHHHHCEECEEGGGGCG---
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCcc---------CCC-CHHHHHHHHHHhCCEEEeCchhcCC---
Confidence            889999999999999998888888888999999766410         011 3455556666689999999987764   


Q ss_pred             ccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHH
Q psy13922        421 TYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF  500 (509)
Q Consensus       421 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~  500 (509)
                                                                   .+.+        ++|++++.++++|++++++|+++
T Consensus       373 ---------------------------------------------~~~~--------~lRis~~~~~~~i~~~~~~l~~~  399 (406)
T 1xi9_A          373 ---------------------------------------------YGAG--------HFRAVFLPPIEILEEAMDRFEKF  399 (406)
T ss_dssp             ---------------------------------------------GGTT--------BEEEECCSCHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------CCCC--------EEEEEecCCHHHHHHHHHHHHHH
Confidence                                                         2223        89999999999999999999999


Q ss_pred             HHHHH
Q psy13922        501 HEEFL  505 (509)
Q Consensus       501 ~~~~~  505 (509)
                      ++++.
T Consensus       400 l~~~~  404 (406)
T 1xi9_A          400 MKERL  404 (406)
T ss_dssp             HHHC-
T ss_pred             HHHHh
Confidence            87654

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=3.9e-40  Score=338.87  Aligned_cols=344  Identities=17%  Similarity=0.268  Sum_probs=277.9

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+.+++.+.+.+   ... .|++  +..++++++++++.+.+|.++++++|++|+|+++++..++++++++
T Consensus        40 ~~~~~~~~~~v~~a~~~~~~~---~~~-~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~  113 (391)
T 4dq6_A           40 ADMDFKAAPCIIDSLKNRLEQ---EIY-GYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKA  113 (391)
T ss_dssp             SSCSSCCCHHHHHHHHHHHTT---CCC-CCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCT
T ss_pred             cCCCCCCCHHHHHHHHHHHhC---CCC-CCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCC
Confidence            55655  68999999999876   333 3765  4589999999999999998888999999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC--CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD--ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.+  .+++|.+|++.|++.+++      +++|++++|+||||.+++.
T Consensus       114 gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~v~i~~p~nptG~~~~~  183 (391)
T 4dq6_A          114 ND----KIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD------VKLFILCNPHNPVGRVWTK  183 (391)
T ss_dssp             TC----EEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT------EEEEEEESSBTTTTBCCCH
T ss_pred             CC----EEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc------CCEEEEECCCCCCCcCcCH
Confidence            88    99999999999999999999999999987  555678999999998864      8889999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++++|+++|++||+++|+||+|.++.+++. .+.++..+..+.     ..++++++|+||.+ |++|+|+||++.  .+
T Consensus       184 ~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~  254 (391)
T 4dq6_A          184 DELKKLGDICLKHNVKIISDEIHSDIILKKH-KHIPMASISKEF-----EKNTITCMAPTKTF-NIAGLQSSYVVL--PD  254 (391)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HHTEEEEECSHHHH-TCGGGCCEEEEC--CS
T ss_pred             HHHHHHHHHHHHcCCEEEeeccccccccCCC-CccCHHHcCccc-----cCcEEEEEechhhc-cCcccceEEEEe--CC
Confidence            9999999999999999999999999988643 333444332221     12388899999999 799999999973  44


Q ss_pred             HHHHHHHHHhhh--cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        258 PGVKAMLHKSIS--AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       258 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      +++++.+.....  ...+++.+                                  ++.++..++.          ...+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~  290 (391)
T 4dq6_A          255 EKDYKLLDDAFTRIDIKRNNCF----------------------------------SLVATEASYN----------NGES  290 (391)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHH----------------------------------HHHHHHHHHH----------HCHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCHH----------------------------------HHHHHHHHHh----------chHH
Confidence            589998887654  23355665                                  4444333322          1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG  414 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  414 (509)
                      ++++.++.++++++.+.+.|++ +|++.+..+++++++|++++.          .+. +...+...+++++||.++||..
T Consensus       291 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~l~~~~gi~v~~g~~  359 (391)
T 4dq6_A          291 WLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSA----------LGL-SDEELESILVQKGKVALNQGNS  359 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGG----------GCC-CHHHHHHHHHHTTCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhh----------cCC-CHHHHHHHHHHhCCEEeeCchh
Confidence            4788899999999999999988 789999999999999987751          011 3455555666656999999998


Q ss_pred             CCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHH
Q psy13922        415 FGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAML  494 (509)
Q Consensus       415 f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~  494 (509)
                      |+.                                                .+.+        ++|++++.++++|++++
T Consensus       360 ~~~------------------------------------------------~~~~--------~iRis~~~~~~~i~~~l  383 (391)
T 4dq6_A          360 FGI------------------------------------------------GGSG--------YQRINLACPRSMLEEAL  383 (391)
T ss_dssp             GCT------------------------------------------------TCTT--------EEEEECCSCHHHHHHHH
T ss_pred             hCC------------------------------------------------CCCC--------eEEEEEcCCHHHHHHHH
Confidence            876                                                3434        99999999999999999


Q ss_pred             HHHHHHH
Q psy13922        495 EKFREFH  501 (509)
Q Consensus       495 ~~l~~~~  501 (509)
                      ++|++++
T Consensus       384 ~~l~~~l  390 (391)
T 4dq6_A          384 IRIKNAI  390 (391)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=3.1e-40  Score=340.35  Aligned_cols=342  Identities=18%  Similarity=0.251  Sum_probs=272.9

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHH-HHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEI-IRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~-lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      .|+.+.+++.+.+..   . ...|++.  ..+ +|+++++++.+++|+++++++|++|+|+++++..++++++++||   
T Consensus        42 ~~~~v~~a~~~~~~~---~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd---  112 (390)
T 1d2f_A           42 TAPCIIEALNQRLMH---G-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGE---  112 (390)
T ss_dssp             CCHHHHHHHHHHHTT---C-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTC---
T ss_pred             CCHHHHHHHHHHHhC---C-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCC---
Confidence            368999999988865   2 3348765  578 99999999998888888899999999999999999999998888   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCEEEEEecCCC-CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNMEQIGYYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                       +|+++.|+|.++...++..|.+++.+|.+++ +.|.+|++.|++.+++.    ++++|++++|+||||.+++.+++++|
T Consensus       113 -~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~----~~~~v~l~~p~nptG~~~~~~~l~~l  187 (390)
T 1d2f_A          113 -GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP----ECKIMLLCSPQNPTGKVWTCDELEIM  187 (390)
T ss_dssp             -EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST----TEEEEEEESSCTTTCCCCCTTHHHHH
T ss_pred             -EEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccC----CCeEEEEeCCCCCCCcCcCHHHHHHH
Confidence             9999999999999999999999999998754 35679999999999753    68999999999999999999999999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      +++|+++|+++|+||+|.++.+++. .+.++..+.+    .  ..+.  +.|+||.+ |++|+|+||+++  .++++++.
T Consensus       188 ~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~----~--~~d~--~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~  255 (390)
T 1d2f_A          188 ADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNVAR----G--DWAL--LTSGSKSF-NIPALTGAYGII--ENSSSRDA  255 (390)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGTCC----S--SEEE--EECSHHHH-TCGGGCCEEEEE--CSHHHHHH
T ss_pred             HHHHHHcCCEEEEEccccccccCCC-CCcCHHHcch----h--hHhh--ccCccHhh-cccChhheEEEE--CCHHHHHH
Confidence            9999999999999999999987642 3334333211    1  0023  88999999 799999999983  46889888


Q ss_pred             HHHhhh---cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHH
Q psy13922        264 LHKSIS---AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSV  340 (509)
Q Consensus       264 l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  340 (509)
                      +.....   .+++++.+                                  ++.++..+++          ...+++++.
T Consensus       256 ~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~----------~~~~~~~~~  291 (390)
T 1d2f_A          256 YLSALKGRDGLSSPSVL----------------------------------ALTAHIAAYQ----------QGAPWLDAL  291 (390)
T ss_dssp             HHHHHHTTSCCCSCCHH----------------------------------HHHHHHHHHH----------HCHHHHHHH
T ss_pred             HHHHHhhhcccCCCCHH----------------------------------HHHHHHHHHh----------cCHHHHHHH
Confidence            877654   23355666                                  4444333322          113347888


Q ss_pred             HHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        341 LDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       341 ~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      ++.++++++.+.+.|++ +|++.+.++.+++++|++++..          +. +...+...+++++||.+.||..|+.  
T Consensus       292 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~l~~~l~~~~gi~v~~g~~f~~--  358 (390)
T 1d2f_A          292 RIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL----------NI-DDNALQKALIEQEKVAIMPGYTYGE--  358 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG----------CC-CHHHHHHHHHHTTCEECEEGGGGCG--
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcccc----------CC-CHHHHHHHHHHHcCEEeeCccccCC--
Confidence            89999999999999998 8899888899999999777410          12 2445555566578999999987764  


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                                    .+.+        ++|++++.++++|++++++|++
T Consensus       359 ----------------------------------------------~~~~--------~~Ris~~~~~~~l~~~l~~l~~  384 (390)
T 1d2f_A          359 ----------------------------------------------EGRG--------FVRLNAGCPRSKLEKGVAGLIN  384 (390)
T ss_dssp             ----------------------------------------------GGTT--------EEEEECCSCHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCC--------eEEEEecCCHHHHHHHHHHHHH
Confidence                                                          2223        9999999889999999999999


Q ss_pred             HHHHH
Q psy13922        500 FHEEF  504 (509)
Q Consensus       500 ~~~~~  504 (509)
                      +++++
T Consensus       385 ~l~~~  389 (390)
T 1d2f_A          385 AIRAV  389 (390)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98765

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=4.8e-40  Score=339.19  Aligned_cols=332  Identities=23%  Similarity=0.373  Sum_probs=274.1

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+.+++.+.+..   .. .+|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++++++++||    
T Consensus        55 ~~~~v~~a~~~~~~~---~~-~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd----  126 (389)
T 1o4s_A           55 TPEPVVEEAVRFLQK---GE-VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGD----  126 (389)
T ss_dssp             CCHHHHHHHHHHHTT---CC-CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTC----
T ss_pred             CCHHHHHHHHHHHhc---CC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCC----
Confidence            368899999988876   22 3598888899999999999998888878889999999999999999999988888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|.++...++..|.+++.++.+++.+|.+|++.|++.+++     ++++|++++|+||||.++|.+++++|++
T Consensus       127 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~  201 (389)
T 1o4s_A          127 EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-----KTKAVLINSPNNPTGVVYRREFLEGLVR  201 (389)
T ss_dssp             EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc-----CceEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999987655688999999998876     7899999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|+++|+||+|.++.+++  ...++..+.. .     ..++++++|+||.+ |++|+|+||++   .++++++.+.
T Consensus       202 ~~~~~~~~li~Dea~~~~~~~g--~~~~~~~~~~-~-----~~~~i~~~s~sK~~-~~~G~r~G~l~---~~~~~~~~l~  269 (389)
T 1o4s_A          202 LAKKRNFYIISDEVYDSLVYTD--EFTSILDVSE-G-----FDRIVYINGFSKSH-SMTGWRVGYLI---SSEKVATAVS  269 (389)
T ss_dssp             HHHHHTCEEEEECTTTTSBCSS--CCCCHHHHCS-S-----STTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHH
T ss_pred             HHHHcCCEEEEEccccccccCC--CCCCHhhcCC-C-----CCcEEEEeechhhc-CCcccceEEEE---eCHHHHHHHH
Confidence            9999999999999999988764  3445555421 0     12378899999999 79999999998   7899999888


Q ss_pred             Hhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHH
Q psy13922        266 KSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL  344 (509)
Q Consensus       266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (509)
                      .... ...+++.+                                  .+.++..+++.     +        ++++++.+
T Consensus       270 ~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~-----~--------~~~~~~~~  302 (389)
T 1o4s_A          270 KIQSHTTSCINTV----------------------------------AQYAALKALEV-----D--------NSYMVQTF  302 (389)
T ss_dssp             HHHHHHTCSCCHH----------------------------------HHHHHHHHTTC-----C--------CHHHHHHH
T ss_pred             HHhhhcccCCCHH----------------------------------HHHHHHHHHhc-----c--------HHHHHHHH
Confidence            7655 23455555                                  34433333331     0        45667788


Q ss_pred             HHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcccc
Q psy13922        345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF  424 (509)
Q Consensus       345 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~  424 (509)
                      +++++.+.+.|+++ |+.+..+.+++++|++++  .            +..++...+++++||.+.||..|+.       
T Consensus       303 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~------------~~~~l~~~l~~~~gi~v~~g~~f~~-------  360 (389)
T 1o4s_A          303 KERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR--G------------DDVKFCERLLEEKKVALVPGSAFLK-------  360 (389)
T ss_dssp             HHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS--S------------CHHHHHHHHHHHHCEECEEGGGGTC-------
T ss_pred             HHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC--C------------CHHHHHHHHHHHCCEEEeCchhcCC-------
Confidence            88999999999988 888888889999997664  1            2444555666688999999887765       


Q ss_pred             ccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       425 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                                                               ++          ++|++++.++++|++++++|+++++
T Consensus       361 -----------------------------------------~~----------~~Ris~~~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          361 -----------------------------------------PG----------FVRLSFATSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             -----------------------------------------TT----------EEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             -----------------------------------------CC----------eEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                                                     33          8999999999999999999998874

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=2.6e-40  Score=347.57  Aligned_cols=342  Identities=19%  Similarity=0.281  Sum_probs=275.0

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccC-CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRG-QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~-~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+.+  |+.|++++.+++..... .....|++..|..+||+++++++.  +|+++++++|++|+|+++++..+ ..+++
T Consensus        77 g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~~  153 (449)
T 3qgu_A           77 GDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMFG  153 (449)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHhC
Confidence            55554  78999999999885321 233459988999999999999997  68888899999999999999998 88888


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCE----------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNME----------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      +||    .|+++.|+|.++...++..|.+          ++.++.++++++..|++.+     .     ++++|++++||
T Consensus       154 ~gd----~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~v~l~~p~  219 (449)
T 3qgu_A          154 SKP----TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----K-----RTDIIFFCSPN  219 (449)
T ss_dssp             SSS----CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----C-----CCSEEEEESSC
T ss_pred             CCC----EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----C-----CCCEEEEeCCC
Confidence            988    9999999999999999999998          9999998776677776543     2     79999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ||||.+++.+++++|+++|+++|+++|+||+|.+|.+++. ...++..+...      ..+++++.|+||.+ |++|+|+
T Consensus       220 NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~------~~~~i~~~s~sK~~-g~~G~r~  291 (449)
T 3qgu_A          220 NPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIPGA------DEVAIETCSFSKYA-GFTGVRL  291 (449)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT-SCSSGGGSTTG------GGTEEEEEECSGGG-TCTTCCC
T ss_pred             CCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC-CCCCHhhccCC------CCcEEEEecchhhc-CCcccee
Confidence            9999999999999999999999999999999999988643 23343332110      23478899999999 7999999


Q ss_pred             EEEeeecCCHHHHH--------HHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcc
Q psy13922        249 GYSEVINLDPGVKA--------MLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV  319 (509)
Q Consensus       249 G~v~~~~~~~~~~~--------~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  319 (509)
                      ||++   .++++++        .+..... .+.+++.+                                  ++.++..+
T Consensus       292 G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~  334 (449)
T 3qgu_A          292 GWTV---VPKALKYANGEPVHADWNRVMTTCFNGASNI----------------------------------VQAGGLAC  334 (449)
T ss_dssp             EEEE---CCTTCBCTTSCBHHHHHHHHHHHSCCCCCHH----------------------------------HHHHHHHH
T ss_pred             EEEe---cCHHHHhhhhhhHHHHHHHHhhcccCCCCHH----------------------------------HHHHHHHH
Confidence            9998   6776654        4444433 44466776                                  55555555


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH
Q psy13922        320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF  399 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  399 (509)
                      +.         +...++++++++.++++++.+.+.|+++ |+.+..+++++|+|++++ .           . ++.+++.
T Consensus       335 l~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~-----------~-~~~~~~~  391 (449)
T 3qgu_A          335 LQ---------PEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFP-G-----------K-PSWDVFA  391 (449)
T ss_dssp             TS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECT-T-----------S-CHHHHHH
T ss_pred             Hh---------hcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECC-C-----------C-CHHHHHH
Confidence            44         2233568899999999999999999998 899888999999998775 1           1 3455667


Q ss_pred             HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeE
Q psy13922        400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHF  479 (509)
Q Consensus       400 ~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      .+++++||.+.||..|+.                                                .+.+        +|
T Consensus       392 ~l~~~~gI~v~pg~~f~~------------------------------------------------~~~~--------~i  415 (449)
T 3qgu_A          392 EILERCNIVTTPGSGYGP------------------------------------------------AGEG--------FV  415 (449)
T ss_dssp             HHHHHHCEECEEGGGGCG------------------------------------------------GGTT--------EE
T ss_pred             HHHHHCCEEEecchHhCC------------------------------------------------CCCC--------eE
Confidence            788888999999998876                                                3444        99


Q ss_pred             EEEeecChHHHHHHHHHHHHHHHHH
Q psy13922        480 RTTILPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       480 Rls~~~~~~~i~~~~~~l~~~~~~~  504 (509)
                      ||+++.++++|++++++|++++++-
T Consensus       416 Ris~~~~~e~i~~~l~~l~~~~~~~  440 (449)
T 3qgu_A          416 RASAFGSRENILEAVRRFKEAYGKR  440 (449)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHHC--
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=7.3e-40  Score=341.90  Aligned_cols=371  Identities=16%  Similarity=0.250  Sum_probs=286.0

Q ss_pred             HHHHHHHhhcCCCCC----CCCC---C-CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCCC
Q psy13922          7 LSLQVLALVSLPQLF----DDPR---F-PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQ   77 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~---~-p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~~   77 (509)
                      .+++++..++.+.++    |.|.   + |+.+.+++.+.++... ....+|++..|..++|+++++++.+++|++ ++++
T Consensus        32 ~~~~~~~~~~~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~  110 (425)
T 1vp4_A           32 IIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY-HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDED  110 (425)
T ss_dssp             CHHHHTTTTTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH-HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGG
T ss_pred             HHHHHHHhccCCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcc-hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcc
Confidence            456666666555543    3333   2 3578888888887621 123459888899999999999998877877 7889


Q ss_pred             cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc--
Q psy13922         78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK--  155 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~--  155 (509)
                      +|++|+|+++++..++++++++||    .|+++.|+|.++...++..|.+++.++.+++   ++|++.|++.+++...  
T Consensus       111 ~v~~t~G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~  183 (425)
T 1vp4_A          111 NLIFTVGSQQALDLIGKLFLDDES----YCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNG  183 (425)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTT
T ss_pred             cEEEeccHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHHhhhhcc
Confidence            999999999999999999998888    9999999999999999999999999998764   4899999999976210  


Q ss_pred             -cCCceEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEE
Q psy13922        156 -HCNPRAIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASF  233 (509)
Q Consensus       156 -~~~~~~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i  233 (509)
                       ..++++|+ +++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..       ..+++++
T Consensus       184 ~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~-------~~~~i~~  255 (425)
T 1vp4_A          184 KIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKIGG-------PERVVLL  255 (425)
T ss_dssp             CGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHHHC-------TTTEEEE
T ss_pred             cCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC-CCcCHHHhCC-------CCCEEEE
Confidence             01588885 689999999999999999999999999999999999999988643 3456655531       1248889


Q ss_pred             EecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccc
Q psy13922        234 MSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG  312 (509)
Q Consensus       234 ~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (509)
                      +|+||.+ | +|+|+||++   .++++++.+..... ...+.+.+                                  .
T Consensus       256 ~s~sK~~-~-~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~  296 (425)
T 1vp4_A          256 NTFSKVL-A-PGLRIGMVA---GSKEFIRKIVQAKQSADLCSPAI----------------------------------T  296 (425)
T ss_dssp             EESTTTT-C-GGGCEEEEE---CCHHHHHHHHHHHHHHHSSCCHH----------------------------------H
T ss_pred             ecccccc-c-cccceEEEe---eCHHHHHHHHHHhhhhcCCCCHH----------------------------------H
Confidence            9999999 7 999999998   68999998887654 23345666                                  4


Q ss_pred             cchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCeeccCCceeEEeecCCCCHHHHHHHhh
Q psy13922        313 QTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS-IE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       313 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                      +.++..+++     +.   .+.++++++++.++++++.+.+.|++ .|   ++.+..+.+++|+|++++.          
T Consensus       297 ~~a~~~~l~-----~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~----------  358 (425)
T 1vp4_A          297 HRLAARYLE-----RY---DLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE----------  358 (425)
T ss_dssp             HHHHHHHHH-----HS---CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT----------
T ss_pred             HHHHHHHHh-----cC---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCC----------
Confidence            444444433     11   12344788889999999999999987 45   6888878889999987751          


Q ss_pred             cCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCC
Q psy13922        389 EGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGA  468 (509)
Q Consensus       389 ~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (509)
                       +. +..++...+++ +||.+.||..|+...                                              .+.
T Consensus       359 -~~-~~~~l~~~l~~-~gi~v~~g~~f~~~~----------------------------------------------~~~  389 (425)
T 1vp4_A          359 -GF-DTWEMFEYAKR-KKVFYVPGRVFKVYD----------------------------------------------EPS  389 (425)
T ss_dssp             -TC-CTTTTHHHHHH-HTEECEEGGGGCTTC----------------------------------------------CCC
T ss_pred             -CC-CHHHHHHHHHH-CCCEEECchhhcCCC----------------------------------------------CCC
Confidence             22 23334455555 499999998886510                                              122


Q ss_pred             CCCCCCCceeEEEEeec-ChHHHHHHHHHHHHHHHHHHhh
Q psy13922        469 GFGQVPGTYHFRTTILP-QPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       469 ~~~~~~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      +        ++|++++. +++++++++++|+++++++.++
T Consensus       390 ~--------~iRis~~~~~~e~i~~~l~~l~~~l~~~~~~  421 (425)
T 1vp4_A          390 P--------SMRLSFCLPPDEKIVEGIKRLREVVLEYGKE  421 (425)
T ss_dssp             S--------EEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------eEEEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            2        89999995 7999999999999999887665

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=2.4e-40  Score=345.56  Aligned_cols=367  Identities=16%  Similarity=0.197  Sum_probs=277.8

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      .|+.+++++.+++..... ....|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++++++++||   
T Consensus        51 ~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd---  126 (429)
T 1yiz_A           51 APKYALNALAAAANSPDP-LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGD---  126 (429)
T ss_dssp             CCHHHHHHHHHHHTCSCG-GGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTC---
T ss_pred             CCHHHHHHHHHHHhcccc-CccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCC---
Confidence            478999999998876321 345698888899999999999998888888888 999999999999999999998888   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCEEEEEecCCCC--------CCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK--------QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                       .|+++.|+|.++...++..|.+++.++.+++.        +|.+|++.|++.+++     ++++|++++|+||||.++|
T Consensus       127 -~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~  200 (429)
T 1yiz_A          127 -EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE-----KTKMIIINTPHNPLGKVMD  200 (429)
T ss_dssp             -EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC
T ss_pred             -EEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhcc-----CceEEEECCCCCCCCccCC
Confidence             99999999999999999999999999987642        578999999999875     7999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      ++++++|+++|++||+++|+||+|.++.+++. .+.++..+. +     ...+++++.|+||.+ |++|+|+||++   .
T Consensus       201 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~-~-----~~~~~~~~~s~sK~~-~~~G~r~G~~~---~  269 (429)
T 1yiz_A          201 RAELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRICTLP-G-----MWERTITIGSAGKTF-SLTGWKIGWAY---G  269 (429)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS-CCCCGGGST-T-----TGGGEEEEEEHHHHH-TCGGGCCEEEE---S
T ss_pred             HHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCcChhhcc-C-----CcCceEEEecchhcc-CCCCcceEEEE---e
Confidence            99999999999999999999999999988643 233433221 0     023478899999999 78999999998   7


Q ss_pred             CHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        257 DPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++++.+..... ..++.+.+                                  .+.++..+++...   ..+..+.+
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~~~---~~~~~~~~  312 (429)
T 1yiz_A          270 PEALLKNLQMVHQNCVYTCATP----------------------------------IQEAIAVGFETEL---KRLKSPEC  312 (429)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCHH----------------------------------HHHHHHHHHHHHH---TTTTSTTS
T ss_pred             CHHHHHHHHHHHhhcccCCChH----------------------------------HHHHHHHHHhccc---ccccchHH
Confidence            8999998887654 34456666                                  3333333322000   00000122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      +++++++.++++++.+.+.|+++ ++.+..+.+++++|+++.-...........+..+..+++..+++++||.+.||..|
T Consensus       313 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f  391 (429)
T 1yiz_A          313 YFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAF  391 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHh
Confidence            37788899999999999999988 88888888999999877521000000000000123455566777899999999877


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +....                                       .    ..+.+        ++|++++.++++|+++++
T Consensus       392 ~~~~~---------------------------------------~----~~~~~--------~iRis~~~~~e~i~~~l~  420 (429)
T 1yiz_A          392 YSEPN---------------------------------------K----HLGED--------FVRYCFFKKDENLQKAAE  420 (429)
T ss_dssp             SCGGG---------------------------------------G----GGTTT--------EEEEECCSCHHHHHHHHH
T ss_pred             CCCcc---------------------------------------c----CCCCC--------eEEEEecCCHHHHHHHHH
Confidence            65100                                       0    00122        999999999999999999


Q ss_pred             HHHHHHH
Q psy13922        496 KFREFHE  502 (509)
Q Consensus       496 ~l~~~~~  502 (509)
                      +|+++++
T Consensus       421 ~l~~~l~  427 (429)
T 1yiz_A          421 ILRKWKG  427 (429)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhcc
Confidence            9998763

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=1.6e-39  Score=340.24  Aligned_cols=345  Identities=20%  Similarity=0.326  Sum_probs=271.5

Q ss_pred             ccCCCCcchHHHHHHHHHHHhhhcC--CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH-h
Q psy13922         47 GSYTDSPGIEIIRRHVAQYISRRDG--QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA-E  123 (509)
Q Consensus        47 ~~Y~~~~g~~~lr~~va~~l~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~-~  123 (509)
                      .+|++..|.+++|+++++++++..+  +++++++|++|+|+++++..++++++++||    .|+++.|+|.++...+. .
T Consensus        80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~  155 (435)
T 3piu_A           80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGE----AVLIPTPYYPGFDRDLKWR  155 (435)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHTTTT
T ss_pred             cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCC----eEEECCCccccHHHHHHHh
Confidence            4599999999999999999985544  557788999999999999999999999998    99999999999998888 7


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD  202 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~  202 (509)
                      .|.+++.++.+++++|.+|++.|++.+++.... .++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.+
T Consensus       156 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~  235 (435)
T 3piu_A          156 TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG  235 (435)
T ss_dssp             TCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             cCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence            899999999988777889999999999874322 3689999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccccHHHHHHHhCCCC---CCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhh
Q psy13922        203 NVYAEGSKFYSFKKVLVEMGEPY---KSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLAL  279 (509)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~  279 (509)
                      +.+++. .+.++..+..+.+.+.   ...++++++|+||.+ |++|+|+||++.  .++.+++.+.+... +...+.+  
T Consensus       236 ~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~-~~~~~~~--  308 (435)
T 3piu_A          236 TAFSSP-SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMSS-FGLVSSQ--  308 (435)
T ss_dssp             GCCSSS-CCCCHHHHHHC-------CGGGGEEEEEESSSSS-CCGGGCEEEEEE--SCHHHHHHHHHHGG-GSCCCHH--
T ss_pred             cccCCC-CCcCHHHhccccccccccCCCCCEEEEEeeeccc-CCCceeEEEEEe--CCHHHHHHHHHHhh-cCCCCHH--
Confidence            888653 4556666554311000   012478899999999 899999999973  47888888876554 3344555  


Q ss_pred             hccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13922        280 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF-SREKQSVLDSLKQRAKMVADTFNSI  358 (509)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~  358 (509)
                                                      .+.++..++..        ..+ .+++++.++.++++++.+.+.|+++
T Consensus       309 --------------------------------~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          309 --------------------------------TQHLLSAMLSD--------KKLTKNYIAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             --------------------------------HHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --------------------------------HHHHHHHHhcC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                            34444333331        222 3346788899999999999999998


Q ss_pred             CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHH
Q psy13922        359 EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAI  438 (509)
Q Consensus       359 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~  438 (509)
                       |+.+.++.+++++|+++.....      ........+++..+++++||.+.||..|+.                     
T Consensus       349 -g~~~~~~~~g~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------  400 (435)
T 3piu_A          349 -GISCLNGNAGLFCWVDMRHLLR------SNTFEAEMELWKKIVYEVHLNISPGSSCHC---------------------  400 (435)
T ss_dssp             -TCEECCCCSSSEEEEECGGGSS------SSSHHHHHHHHHHHHHTSCEECEEGGGGTC---------------------
T ss_pred             -CCcccCCCeeEEEEEEcccccc------cCCchhHHHHHHHHHHHCCEEEeCCcccCC---------------------
Confidence             8998899999999987752100      000001334566777777999999998876                     


Q ss_pred             HHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeec-ChHHHHHHHHHHHHHHHHHH
Q psy13922        439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILP-QPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~~~  505 (509)
                                                 .+.+        ++||+++. ++++|++++++|++++++++
T Consensus       401 ---------------------------~~~~--------~iRi~~~~~~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          401 ---------------------------TEPG--------WFRVCFANLPERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             ---------------------------SSTT--------EEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ---------------------------CCCC--------EEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence                                       3333        99999995 99999999999999998764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=8.7e-40  Score=340.79  Aligned_cols=335  Identities=16%  Similarity=0.172  Sum_probs=255.0

Q ss_pred             hHHHHHHHHhhc---CCCCC----C---CCCC----CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhc
Q psy13922          5 FSLSLQVLALVS---LPQLF----D---DPRF----PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD   70 (509)
Q Consensus         5 ~~~~~~~~~~~~---~~~~~----~---~~~~----p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~   70 (509)
                      .+.++.++..+.   .++.+    |   +|+.    ++.+++++.+++..   ....+|++..|.+++|+++++++....
T Consensus        33 ~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~  109 (420)
T 4f4e_A           33 RDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA---GLPRGYLPIDGIAAYDASVQKLLLGDD  109 (420)
T ss_dssp             CCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT---CCCCCCCCTTCCHHHHHHHHHHHHCTT
T ss_pred             CChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc---CCCCCCCCCCCcHHHHHHHHHHhcCCC
Confidence            345666665543   34433    4   3443    37999999998887   344569999999999999999997665


Q ss_pred             CCCCCCC--cEEEeCCHHHHHHHHHH--HhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHH
Q psy13922         71 GQPADWQ--DVILSAGASDGIKSVLK--LLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL  146 (509)
Q Consensus        71 g~~~~~~--~i~~t~G~~~al~~~~~--~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L  146 (509)
                      +..++++  +|++|+|+++++..+++  .++++||    +|+++.|+|.++...++..|.+++.++..++.++.+|++.|
T Consensus       110 ~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  185 (420)
T 4f4e_A          110 SPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKA----KVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGM  185 (420)
T ss_dssp             CHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHH
T ss_pred             ccccccCceEEEECCccHHHHHHHHHHHHHhCCCC----EEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHH
Confidence            4444678  89999999999999954  5678888    99999999999999999999999999985444678999999


Q ss_pred             HHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCC
Q psy13922        147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYK  226 (509)
Q Consensus       147 ~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (509)
                      ++.+++.  .++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++++....++..+. +.     
T Consensus       186 ~~~l~~~--~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~-----  257 (420)
T 4f4e_A          186 LAALNGY--EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFA-AA-----  257 (420)
T ss_dssp             HHHHTTC--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHH-HT-----
T ss_pred             HHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHH-hc-----
Confidence            9999742  116788889999999999999999999999999999999999999999986433344555443 22     


Q ss_pred             CceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHH----HHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHH
Q psy13922        227 SMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML----HKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQA  301 (509)
Q Consensus       227 ~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (509)
                      ..++++++|+||.+ |++|+|+||++++..++++++.+    .... ..+.+++..                        
T Consensus       258 ~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  312 (420)
T 4f4e_A          258 NLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTH------------------------  312 (420)
T ss_dssp             TCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSH------------------------
T ss_pred             CCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHH------------------------
Confidence            23489999999999 79999999986444577766553    2222 234455665                        


Q ss_pred             hhhcccCcccccchhhcccCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeeccCCceeEEeecCC
Q psy13922        302 VLDGCRGQSVGQTVMDCVVNPPQPGEPSY-EQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQGAMYAFPQMK  377 (509)
Q Consensus       302 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~  377 (509)
                                ++.++..++.     ++.+ +.|.++++++++.++++++.+.+.|+++   +++.+..+++++|+|++++
T Consensus       313 ----------~~~~~~~~l~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~  377 (420)
T 4f4e_A          313 ----------GGAIVAAVLA-----SPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT  377 (420)
T ss_dssp             ----------HHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC
T ss_pred             ----------HHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC
Confidence                      4444433332     1111 2245668999999999999999999987   4788888999999996553


Q ss_pred             CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       378 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                                      . ..+..+++++||++.|
T Consensus       378 ----------------~-~~~~~~l~~~gI~v~~  394 (420)
T 4f4e_A          378 ----------------S-AQVDRLREEFGIYAVS  394 (420)
T ss_dssp             ----------------H-HHHHHHHHHHCEECCT
T ss_pred             ----------------H-HHHHHHHHhCCEEecC
Confidence                            1 2357888899999884

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=1.1e-39  Score=341.18  Aligned_cols=339  Identities=19%  Similarity=0.274  Sum_probs=269.6

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccC-CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRG-QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~-~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      .+++.+  |+.|++++.+++..... .....|++..|..++|+++++++.+  ++.+++++|++|+|+++++..+ ..++
T Consensus        63 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~  139 (432)
T 3ei9_A           63 IGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMF  139 (432)
T ss_dssp             SCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHc
Confidence            366665  68999999999886332 2334598888999999999999974  5567889999999999999874 7778


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCC------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNM------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                      ++||    .|+++.|+|.++...++..|.            +++.++.++++++..|++.     ..     ++++|+++
T Consensus       140 ~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~-----~~~~v~l~  205 (432)
T 3ei9_A          140 GSNV----TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VG-----RTDIIFFC  205 (432)
T ss_dssp             CTTC----CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CC-----CCSEEEEE
T ss_pred             CCCC----EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CC-----CCCEEEEe
Confidence            8888    999999999999999888874            6788888766666666544     12     78999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       166 ~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      +||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ..++..+. ..     ..++++++|+||.+ |++|
T Consensus       206 ~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~--~~~~~~~~-~~-----~~~~i~~~S~SK~~-g~~G  276 (432)
T 3ei9_A          206 SPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN--PRSIFEIP-GA-----EEVAMETASFSNYA-GFTG  276 (432)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC--CSSGGGST-TG-----GGTEEEEEESHHHH-CTTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC--CCChhhcC-CC-----CCeEEEEecchhcc-CCcc
Confidence            9999999999999999999999999999999999999987642  23333321 10     23488899999999 7999


Q ss_pred             CeeEEEeeecCCHHH--------HHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchh
Q psy13922        246 LRGGYSEVINLDPGV--------KAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM  316 (509)
Q Consensus       246 lr~G~v~~~~~~~~~--------~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  316 (509)
                      +|+||++   .++++        ++.+.+... .+.+++.+                                  ++.++
T Consensus       277 ~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~  319 (432)
T 3ei9_A          277 VRLGWTV---IPKKLLYSDGFPVAKDFNRIICTCFNGASNI----------------------------------SQAGA  319 (432)
T ss_dssp             TCCEEEE---CCTTCBCTTSCBHHHHHHHHHHHSCCCSCHH----------------------------------HHHHH
T ss_pred             cceEEEE---EChHHhhcchHHHHHHHHHHhccccCCCCHH----------------------------------HHHHH
Confidence            9999998   56666        777776554 34556666                                  55554


Q ss_pred             hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      ..++.         +...++++++++.++++++.+.+.|+++ |+.+..+.+++|+|++++            +. ++.+
T Consensus       320 ~~~l~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~------------~~-~~~~  376 (432)
T 3ei9_A          320 LACLT---------PEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFP------------NQ-SSWD  376 (432)
T ss_dssp             HHHSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECT------------TS-CHHH
T ss_pred             HHHHh---------cccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECC------------CC-CHHH
Confidence            44443         2233568899999999999999999998 888888888899998775            11 3455


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ++..+++++||.+.||..|+.                                                .+.+       
T Consensus       377 ~~~~ll~~~gv~v~~g~~f~~------------------------------------------------~~~~-------  401 (432)
T 3ei9_A          377 VFAEILEKTHVVTTPGSGFGP------------------------------------------------GGEG-------  401 (432)
T ss_dssp             HHHHHHHHHCEECEEGGGGCG------------------------------------------------GGTT-------
T ss_pred             HHHHHHHHCCEEEeCchHhCC------------------------------------------------CCCC-------
Confidence            577888888999999998876                                                3444       


Q ss_pred             eeEEEEeecChHHHHHHHHHHHHHH
Q psy13922        477 YHFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       477 ~~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                       ++|++++.++++|++++++|++.-
T Consensus       402 -~iRis~~~~~e~l~~~l~rl~~~~  425 (432)
T 3ei9_A          402 -FVRVSAFGHRENILEACRRFKQLY  425 (432)
T ss_dssp             -EEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             -EEEEEecCCHHHHHHHHHHHHHHh
Confidence             999999999999999999998764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=5.3e-39  Score=335.45  Aligned_cols=344  Identities=19%  Similarity=0.347  Sum_probs=267.2

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCC--CCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH-
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQP--ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA-  122 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~-  122 (509)
                      ..+|+++.|..++|+++++++++.+|+.  +++++|++|+|+++++..++++++++||    .|+++.|+|.++...+. 
T Consensus        76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~  151 (428)
T 1iay_A           76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD----AFLVPSPYYPAFNRDLRW  151 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTC----EEEEESSCCTTHHHHTTT
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCC----eEEEccCCCcchHHHHHH
Confidence            4569988889999999999999888866  7789999999999999999999999988    99999999999987554 


Q ss_pred             hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        123 EFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       123 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ..|++++.++.+++.+|.+|++.|++.+++.... .++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.
T Consensus       152 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~  231 (428)
T 1iay_A          152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA  231 (428)
T ss_dssp             TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTG
T ss_pred             hcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccc
Confidence            6799999999876556889999999999753221 368999999999999999999999999999999999999999999


Q ss_pred             cccccCCCccccHHHHHHHh-CCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEM-GEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV  280 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (509)
                      ++.+++. .+.++..+..+. .......+++++.|+||.+ |++|+|+||++.  .++++++.+.+... +++.+.+   
T Consensus       232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~--~~~~~~~~~~~~~~-~~~~~~~---  303 (428)
T 1iay_A          232 ATVFDTP-QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSS-FGLVSTQ---  303 (428)
T ss_dssp             GGCCSSS-CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHT-TSCCCHH---
T ss_pred             ccccCCC-CccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEe--CCHHHHHHHHHHHh-cccCCHH---
Confidence            9877542 344555554220 0000012488899999999 799999999983  47889998886544 3445666   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ-FSREKQSVLDSLKQRAKMVADTFNSIE  359 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~  359 (509)
                                                     ++.++..+++     +   .. ..++++++++.++++++.+.+.|+++ 
T Consensus       304 -------------------------------~~~a~~~~l~-----~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  343 (428)
T 1iay_A          304 -------------------------------TQYFLAAMLS-----D---EKFVDNFLRESAMRLGKRHKHFTNGLEVV-  343 (428)
T ss_dssp             -------------------------------HHHHHHHHTT-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             -------------------------------HHHHHHHHhc-----C---hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence                                           5555555554     1   22 22357889999999999999999998 


Q ss_pred             CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHH
Q psy13922        360 GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIA  439 (509)
Q Consensus       360 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~  439 (509)
                      |+.+.++++++|+|+++.....      .........+...+++++||.++||..|+.                      
T Consensus       344 g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~----------------------  395 (428)
T 1iay_A          344 GIKCLKNNAGLFCWMDLRPLLR------ESTFDSEMSLWRVIINDVKLNVSPGSSFEC----------------------  395 (428)
T ss_dssp             TCCBCCCSSSSEEEEECGGGCS------SSSHHHHHHHHHHHHHTSCEECEEGGGGTC----------------------
T ss_pred             CCcccCCCeeEEEEEechhhcC------CCchhHHHHHHHHHHHhCCEEEeCchhhCC----------------------
Confidence            8888888889999987741100      000001234455566667999999987765                      


Q ss_pred             HHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHH
Q psy13922        440 KAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~  503 (509)
                                                .+.+        ++|++++ .+++++++++++|++++++
T Consensus       396 --------------------------~~~~--------~iRis~~~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          396 --------------------------QEPG--------WFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             --------------------------SSSS--------EEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             --------------------------CCCC--------EEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                                      2223        8999999 8999999999999998853

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=4.6e-39  Score=329.22  Aligned_cols=326  Identities=26%  Similarity=0.412  Sum_probs=267.5

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+.+++.+.+..   . ..+|++..|..++|+++++++...+|+++++++|++|+|+++++..++++++++||    
T Consensus        43 ~~~~v~~a~~~~~~~---~-~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd----  114 (370)
T 2z61_A           43 TPKPIVDEGIKSLKE---G-KTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGD----  114 (370)
T ss_dssp             CCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTC----
T ss_pred             CCHHHHHHHHHHHHc---C-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCC----
Confidence            378999999998876   2 33598888899999999999998889888999999999999999999999998888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      +|+++.|+|.++...++..|.+++.++        +|++.|++.+++     ++++|++++|+||||.+++.+    |++
T Consensus       115 ~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~----l~~  177 (370)
T 2z61_A          115 EVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSD-----KTKAIIINSPSNPLGEVIDRE----IYE  177 (370)
T ss_dssp             EEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCS-----SEEEEEEESSCTTTCCCCCHH----HHH
T ss_pred             EEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhccc-----CceEEEEcCCCCCcCcccCHH----HHH
Confidence            999999999999999999999999887        589999998876     789999999999999999966    999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|+++|+||+|.++.+++  .+.++.++. +     ...++++++|+||.+ |++|+|+||++   .++++++.+.
T Consensus       178 ~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~-~-----~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~  245 (370)
T 2z61_A          178 FAYENIPYIISDEIYNGLVYEG--KCYSAIEFD-E-----NLEKTILINGFSKLY-AMTGWRIGYVI---SNDEIIEAIL  245 (370)
T ss_dssp             HHHHHCSEEEEECTTTTCBSSS--CCCCGGGTC-T-----TCSSEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHH
T ss_pred             HHHHcCCEEEEEcchhhcccCC--CCcCHHHcc-C-----CCCcEEEEecChhcc-CCccceEEEEE---ECHHHHHHHH
Confidence            9999999999999999988764  233433321 0     123488899999999 79999999998   7889999998


Q ss_pred             Hhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHH
Q psy13922        266 KSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL  344 (509)
Q Consensus       266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (509)
                      .... ...+++.+                                  .+.++..+++         ....++++++++.+
T Consensus       246 ~~~~~~~~~~~~~----------------------------------~~~a~~~~l~---------~~~~~~~~~~~~~~  282 (370)
T 2z61_A          246 KLQQNLFISAPTI----------------------------------SQYAALKAFE---------KETEREINSMIKEF  282 (370)
T ss_dssp             HHHHHHTSSSCHH----------------------------------HHHHHGGGGS---------HHHHHHHHHHHHHH
T ss_pred             HHHhhcccCCCHH----------------------------------HHHHHHHHHh---------ccCHHHHHHHHHHH
Confidence            7665 33456666                                  4555555543         10134578889999


Q ss_pred             HHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcccc
Q psy13922        345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF  424 (509)
Q Consensus       345 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~  424 (509)
                      +++++.+.+.|+++ |+++..+++++++|++++            +  +..++...+++++||.+.||..|+.       
T Consensus       283 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~------------~--~~~~~~~~l~~~~gi~v~~g~~f~~-------  340 (370)
T 2z61_A          283 DRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIG------------E--DGREFAYKLLKEKFVALTPGIGFGS-------  340 (370)
T ss_dssp             HHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCS------------S--CHHHHHHHHHHHHCEECEEGGGGCG-------
T ss_pred             HHHHHHHHHHHHHc-CCeecCCCcceEEEEecC------------C--CHHHHHHHHHHhCCEEEeCchhhCC-------
Confidence            99999999999998 888888889999997665            1  2445555666688999999987764       


Q ss_pred             ccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       425 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                                                               .+.+        ++|++++.++++|++++++|+++++
T Consensus       341 -----------------------------------------~~~~--------~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          341 -----------------------------------------KGKN--------YIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             -----------------------------------------GGSS--------BEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             -----------------------------------------CCCC--------EEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                                                     2223        8999999999999999999998874

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=1.1e-39  Score=334.33  Aligned_cols=326  Identities=21%  Similarity=0.301  Sum_probs=266.9

Q ss_pred             HHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCC
Q psy13922         33 RAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIP  112 (509)
Q Consensus        33 a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p  112 (509)
                      ++.+.+..   .... |++..|..++|+++++++.     .+++++|++|+|+++++..++++++++||    +|+++.|
T Consensus        47 ~~~~~~~~---~~~~-y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd----~Vl~~~~  113 (375)
T 3op7_A           47 DFYKKLQG---TKLN-YGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGD----HVISLYP  113 (375)
T ss_dssp             HHHHHHHT---SCCS-SCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEES
T ss_pred             HHHHHHhc---CCcC-CCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCC----EEEEeCC
Confidence            45555555   4444 9999999999999999873     35778999999999999999999999998    9999999


Q ss_pred             CChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc
Q psy13922        113 QYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL  192 (509)
Q Consensus       113 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i  192 (509)
                      +|.++...++..|.+++.++.+++.+|.+|++.|++++++     ++++|++++|+||||.+++.+++++|+++|++||+
T Consensus       114 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~  188 (375)
T 3op7_A          114 TYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-----TTKMICINNANNPTGAVMDRTYLEELVEIASEVGA  188 (375)
T ss_dssp             SCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC
T ss_pred             CchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-----CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999998766788999999999976     79999999999999999999999999999999999


Q ss_pred             EEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-c
Q psy13922        193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-M  271 (509)
Q Consensus       193 ~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~  271 (509)
                      ++|+||+|..+.++   ...++.+..         .++++++|+||.+ |++|+|+||++   .++++++.+...... .
T Consensus       189 ~li~De~~~~~~~~---~~~~~~~~~---------~~~i~~~s~sK~~-~~~G~r~G~v~---~~~~l~~~~~~~~~~~~  252 (375)
T 3op7_A          189 YILSDEVYRSFSEL---DVPSIIEVY---------DKGIAVNSLSKTY-SLPGIRIGWVA---ANHQVTDILRDYRDYTM  252 (375)
T ss_dssp             EEEEECCSCCCSSS---CCCCHHHHC---------TTEEEEEESSSSS-SCGGGCCEEEE---CCHHHHHHHTTTGGGTT
T ss_pred             EEEEEccccccccc---CCCchhhhc---------CCEEEEeEChhhc-CCcccceEEEE---eCHHHHHHHHHHHhhhc
Confidence            99999999998775   233443321         2378899999999 78999999998   799999999876653 3


Q ss_pred             cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy13922        272 LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMV  351 (509)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  351 (509)
                      .+.+.+                                  .+.++..++          ....+++++.++.++++++.+
T Consensus       253 ~~~~~~----------------------------------~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~l  288 (375)
T 3op7_A          253 ICAGVF----------------------------------DDLVAQLAL----------AHYQEILERNRHILEENLAIL  288 (375)
T ss_dssp             SCCCHH----------------------------------HHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcH----------------------------------HHHHHHHHH----------hccHHHHHHHHHHHHHHHHHH
Confidence            344454                                  333333222          223334778888899999999


Q ss_pred             HHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhh
Q psy13922        352 ADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWR  431 (509)
Q Consensus       352 ~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~  431 (509)
                      .+.|++.+++.+..+.++++.|+.++.+.            +..+++..+++++||.+.||..|+.              
T Consensus       289 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~gi~v~~g~~~~~--------------  342 (375)
T 3op7_A          289 DQWIEEEPLVSYIRPAVVSTSFVKIAVDM------------PMEDFCLQLLQEHGVLLVPGNRFER--------------  342 (375)
T ss_dssp             HHHHHHCTTEEECCCSSSSCEEEEECCSS------------CHHHHHHHHHHHHCEECEEGGGGTC--------------
T ss_pred             HHHHhhCCCceEecCCCeEEEeEEcCCCC------------CHHHHHHHHHHhCCEEEeChhhhCC--------------
Confidence            99999988898888899988887775321            3455567777899999999987765              


Q ss_pred             hhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHHHh
Q psy13922        432 HYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                                                        ++          ++|++++.+.++|++++++|.++++++.+
T Consensus       343 ----------------------------------~~----------~iRi~~~~~~~~i~~~l~~l~~~l~~~~~  373 (375)
T 3op7_A          343 ----------------------------------DG----------YVRLGFACEQETLIKGLEKLSQFLRRFDK  373 (375)
T ss_dssp             ----------------------------------TT----------EEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred             ----------------------------------CC----------eEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence                                              34          99999998889999999999999876543

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=6.3e-39  Score=332.23  Aligned_cols=371  Identities=20%  Similarity=0.314  Sum_probs=281.7

Q ss_pred             HHHHHHHHhhc---CC--CCC----CCCC---CC-HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCC
Q psy13922          6 SLSLQVLALVS---LP--QLF----DDPR---FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ   72 (509)
Q Consensus         6 ~~~~~~~~~~~---~~--~~~----~~~~---~p-~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~   72 (509)
                      +.++.++..+.   .+  .++    |.|.   +| +.+.+++.+++.... .... |++..|..++|+++++++.+.+|+
T Consensus        17 ~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-y~~~~~~~~l~~~la~~~~~~~g~   94 (407)
T 2zc0_A           17 SALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP-KSVM-YTPANGIPELREELAAFLKKYDHL   94 (407)
T ss_dssp             CHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG-GGGS-CCCTTCCHHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc-cccc-CCCCCCCHHHHHHHHHHHHHhcCC
Confidence            34566666554   34  332    3333   23 578888988887622 1235 888889999999999999888887


Q ss_pred             CCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHh
Q psy13922         73 PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITE  152 (509)
Q Consensus        73 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~  152 (509)
                      ++++++|++|+|+++++..++++++++||    .|+++.|+|.++...++..|.+++.++.+++   ++|++.|++.++.
T Consensus        95 ~~~~~~v~~t~g~t~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~  167 (407)
T 2zc0_A           95 EVSPENIVITIGGTGALDLLGRVLIDPGD----VVITENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLEEKIKE  167 (407)
T ss_dssp             CCCGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHH
T ss_pred             CCCcceEEEecCHHHHHHHHHHHhcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEcccCCC---CCCHHHHHHHHHh
Confidence            78889999999999999999999998888    9999999999999999999999999998754   4899999999972


Q ss_pred             hhcc-CCceEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCcee
Q psy13922        153 ARKH-CNPRAIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMEL  230 (509)
Q Consensus       153 ~~~~-~~~~~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  230 (509)
                      .... .++++|+ +++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++. .+.++..+.    .   ..++
T Consensus       168 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~----~---~~~~  239 (407)
T 2zc0_A          168 LKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG-DIVPLKALD----N---EGRV  239 (407)
T ss_dssp             HHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS-SCCCGGGGC----S---SCCE
T ss_pred             hhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC-CCCChhhcC----C---CCCE
Confidence            1101 2588875 689999999999999999999999999999999999999987542 233443321    1   2248


Q ss_pred             EEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        231 ASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       231 i~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      ++++|+||.+ | +|+|+||++   .++++++.+...... ..+.+.+                                
T Consensus       240 i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  282 (407)
T 2zc0_A          240 IVAGTLSKVL-G-TGFRIGWII---AEGEILKKVLMQKQPIDFCAPAI--------------------------------  282 (407)
T ss_dssp             EEEEESTTTT-C-TTSCCEEEE---CCHHHHHHHHHHHTTTTSSSCHH--------------------------------
T ss_pred             EEEccccccc-C-CCcceEEEe---cCHHHHHHHHHHHHhhcCCCCHH--------------------------------
Confidence            8999999999 7 999999998   689999998876653 2344555                                


Q ss_pred             ccccchhhcccCCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHh
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQFS-REKQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~  387 (509)
                        .+.++..+++     ..   .+. ++++++++.++++++.+.+.|++ .|++.+..+.+++++|++++  .       
T Consensus       283 --~~~~~~~~l~-----~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~-------  343 (407)
T 2zc0_A          283 --SQYIALEYLK-----RG---YFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLP--E-------  343 (407)
T ss_dssp             --HHHHHHHHHH-----TT---HHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECS--T-------
T ss_pred             --HHHHHHHHHH-----cC---CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcC--C-------
Confidence              3333333332     11   122 34677888889999999999987 57888777888999998774  1       


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCC
Q psy13922        388 AEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPG  467 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (509)
                        +. +...+...+++++||.+.||..|....                                              .+
T Consensus       344 --~~-~~~~l~~~l~~~~gi~v~~g~~~~~~~----------------------------------------------~~  374 (407)
T 2zc0_A          344 --GA-DGISFANELMEREGVVVVPGKPFYTDE----------------------------------------------SG  374 (407)
T ss_dssp             --TC-CHHHHHHHHHHHTCEECBCSGGGCSSS----------------------------------------------CC
T ss_pred             --CC-CHHHHHHHHHHhCCeEEECchhccCCC----------------------------------------------CC
Confidence              22 344555555555599999998876510                                              12


Q ss_pred             CCCCCCCCceeEEEEeec-ChHHHHHHHHHHHHHHHHHHh
Q psy13922        468 AGFGQVPGTYHFRTTILP-QPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       468 ~~~~~~~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      .+        ++|++++. +++++++++++|+++++++.+
T Consensus       375 ~~--------~iRis~~~~~~~~i~~~~~~l~~~l~~~~~  406 (407)
T 2zc0_A          375 KN--------AIRLNFSRPSKEEIPIGIKKLAKLYKEKFG  406 (407)
T ss_dssp             TT--------EEEEECSSSCTTHHHHHHHHHHHHHHHHC-
T ss_pred             CC--------eEEEEeCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            22        89999995 799999999999999987654

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=3.3e-39  Score=335.90  Aligned_cols=347  Identities=16%  Similarity=0.206  Sum_probs=267.1

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      ..|+.+.+++.+....    ....|++..|.+++|+++++++...++.. .+++|++|+|+++++..++++++++||   
T Consensus        56 ~~~~~v~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd---  127 (418)
T 3rq1_A           56 VFLKTVKEEYLSLSDS----EHVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGD---  127 (418)
T ss_dssp             CCCHHHHHHHHTCCHH----HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTC---
T ss_pred             cccHHHHHHHHHhccc----ccCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCC---
Confidence            3467777777654432    23459999999999999999997765522 233999999999999999999999998   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCce-EEEEeCC-CCCCCCCCCHHHHHH
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR-AIVIINP-GNPTGQVLTKENIQD  182 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~-~ivi~~p-~NPtG~~~s~~~l~~  182 (509)
                       +|+++.|+|.++...++..|.+++.++.+++. |.+|++.|++.+++.... +++ ++++++| |||||.+++.+++++
T Consensus       128 -~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~-~~~~~vi~~~p~~NPtG~~~~~~~l~~  204 (418)
T 3rq1_A          128 -EVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAFQNRVNELAAK-QTNVVVIFNTPGNNPTGYSIEDKDWDS  204 (418)
T ss_dssp             -EEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHHHHHHHHHHHH-CSEEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             -EEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc-CCCEEEEEeCCCCCCCCCCCCHHHHHH
Confidence             99999999999999999999999999986553 789999999999752111 355 7788999 999999999999999


Q ss_pred             HHHHHH------HCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        183 IIKFAH------REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       183 l~~ia~------~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      |+++|+      ++|+++|+||+|.+|.+++. ...++.....++   .++..+++++||||.+ |++|+|+||++.++.
T Consensus       205 l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~---~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~  279 (418)
T 3rq1_A          205 ILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKD-EVRAFFNKFSHL---PKEILTCVCYSLSKGF-TMYGQRVGAMIGISD  279 (418)
T ss_dssp             HHHHHHHHHHTSSCEEEEEEECTTGGGSSCHH-HHHGGGGGGTTC---CTTEEEEEEEESTTTT-TCCSSCCEEEEEEES
T ss_pred             HHHHHHHhhhccCCCeEEEEecccccccCChH-HHHHHHHHHHhc---CCCceEEEEEeCCCCC-cCcCCcceEEEEEeC
Confidence            999999      89999999999999886531 112222211111   1122368889999999 799999999982223


Q ss_pred             CHHHHHHHHHhhh-----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        257 DPGVKAMLHKSIS-----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       257 ~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      ++++++.+.....     .+..++.+                                  ++.++..+++.    .+.++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~----~~~~~  321 (418)
T 3rq1_A          280 DEEIADEFFEVNKSTSRATWSNICRP----------------------------------AMRTMANIVAD----PAKFK  321 (418)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTSSCCHH----------------------------------HHHHHHHHHTC----HHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhccCCCchH----------------------------------HHHHHHHHhCC----HHHHH
Confidence            8999999887643     12345666                                  55555544441    11123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      .+.++++++++.++++++.+.+.|+++ |+++.++++++|+|+++.               +..++ .+.|.++||.++|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---------------~~~~~-~~~l~~~gi~v~~  384 (418)
T 3rq1_A          322 EYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD---------------SANAI-CEELKKEHIYVIA  384 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT---------------THHHH-HHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC---------------CHHHH-HHHHHhCCEEEec
Confidence            455567788899999999999999998 899999999999997663               23444 4567889999997


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKL  490 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i  490 (509)
                      |.                                                       +        ++|||++ .++++|
T Consensus       385 g~-------------------------------------------------------~--------~iRis~~~~~~~~i  401 (418)
T 3rq1_A          385 LA-------------------------------------------------------N--------GIRIAACGIPKCQM  401 (418)
T ss_dssp             CS-------------------------------------------------------S--------EEEEEGGGSCHHHH
T ss_pred             CC-------------------------------------------------------C--------CeEEEEecCCHHHH
Confidence            52                                                       2        8999998 699999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy13922        491 KAMLEKFREFHEEFL  505 (509)
Q Consensus       491 ~~~~~~l~~~~~~~~  505 (509)
                      ++++++|+++++++.
T Consensus       402 ~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          402 TGLAEKIYNAMKSLG  416 (418)
T ss_dssp             TTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999997653

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.8e-39  Score=338.08  Aligned_cols=350  Identities=15%  Similarity=0.156  Sum_probs=274.5

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--   97 (509)
                      +.|.+  |+.+++++.+.+..   ....+|++..|..++|++++++++..+|+++++++|++|+|+++++..++++++  
T Consensus        52 ~~~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~  128 (437)
T 3g0t_A           52 GVPGLPAPQIGIETEIQKLRE---GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRT  128 (437)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHH---TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTS
T ss_pred             cCCCCCCCHHHHHHHHHHHhC---CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcC
Confidence            55555  68999999999987   443569999899999999999999999999999999999999999999999998  


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||  +.+|+++.|+|.++...++..|++++.++.++ .+|.+|++.|++.++..    ++++|++++||||||.+++.
T Consensus       129 ~~gd--~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~----~~~~v~l~~p~nptG~~~~~  201 (437)
T 3g0t_A          129 HKNR--EYGTLFIDPGFNLNKLQCRILGQKFESFDLFE-YRGEKLREKLESYLQTG----QFCSIIYSNPNNPTWQCMTD  201 (437)
T ss_dssp             CTTC--SCCEEEEESCCHHHHHHHHHHTCCCEEEEGGG-GCTTHHHHHHHHHHTTT----CCCEEEEESSCTTTCCCCCH
T ss_pred             CCCC--ccEEEEeCCCcHhHHHHHHHcCCEEEEEeecC-CCCccCHHHHHHHHhcC----CceEEEEeCCCCCCCCcCCH
Confidence            7663  12799999999999999999999999999973 46788999999999432    79999999999999999999


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc---ccH-HHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF---YSF-KKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +++++|+++|+++|++||+||+|+++.+++....   +++ ..+ .+.     ..++++++|+||.+ |++|+|+||++ 
T Consensus       202 ~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~i~~~s~sK~~-~~~G~r~G~~~-  273 (437)
T 3g0t_A          202 EELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV-ANY-----TDNYILALSSSKAF-SYAGQRIGVLM-  273 (437)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG-GGT-----CSCEEEEEESTTTT-SCGGGCCEEEE-
T ss_pred             HHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc-CCC-----CCcEEEEEcCccCC-CCccceeEEEE-
Confidence            9999999999999999999999999887632222   011 111 111     23488899999999 79999999998 


Q ss_pred             ecCCHHHHH-H-----------------HHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc
Q psy13922        254 INLDPGVKA-M-----------------LHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT  314 (509)
Q Consensus       254 ~~~~~~~~~-~-----------------l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (509)
                        .++++++ .                 +..... ...+++.+                                  .+.
T Consensus       274 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~  317 (437)
T 3g0t_A          274 --ISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHS----------------------------------AQW  317 (437)
T ss_dssp             --ECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHH----------------------------------HHH
T ss_pred             --ECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHH----------------------------------HHH
Confidence              6888888 6                 554443 23455665                                  444


Q ss_pred             hhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-------cCCceeEEeecCCCCHHHHHHHh
Q psy13922        315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-------PVQGAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       315 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-------~~~~g~~~~~~~~~~~~~~~~~~  387 (509)
                      ++..+++.       ...+.++++++++.++++++.+.+.|+++ |+.+.       ++.+++++|++++          
T Consensus       318 a~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------  379 (437)
T 3g0t_A          318 GMAAMLKA-------CNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYK----------  379 (437)
T ss_dssp             HHHHHHHH-------HHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEET----------
T ss_pred             HHHHHHhC-------cHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecC----------
Confidence            44443320       01111117788899999999999999999 88887       4488999997775          


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCC
Q psy13922        388 AEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPG  467 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (509)
                        +. +...+.. .|.++||.+.||..|+.                                                ..
T Consensus       380 --~~-~~~~l~~-~L~~~gi~v~~~~~~~~------------------------------------------------~~  407 (437)
T 3g0t_A          380 --GM-DSSKLIE-KFVRYGMCAITLKTTGS------------------------------------------------KR  407 (437)
T ss_dssp             --TC-CHHHHHH-HHHHTTEECEESTTTTC------------------------------------------------CC
T ss_pred             --CC-CHHHHHH-HHHHcCeEEeeccccCC------------------------------------------------CC
Confidence              11 2444444 44566999999988765                                                22


Q ss_pred             CCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHH
Q psy13922        468 AGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       468 ~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~  503 (509)
                      .+        ++|+|++ .++++|++++++|++++++
T Consensus       408 ~~--------~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          408 NE--------AMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             TT--------CEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             CC--------EEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            22        8999999 5999999999999998753

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=1.5e-38  Score=328.57  Aligned_cols=363  Identities=19%  Similarity=0.285  Sum_probs=282.2

Q ss_pred             HHHHHHHHhhcCCCCC----CCCC---C-CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC
Q psy13922          6 SLSLQVLALVSLPQLF----DDPR---F-PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ   77 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~---~-p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~   77 (509)
                      +.++.++...+.+.++    +.|.   + ++.+.+++.+++.+.. ....+|++..|..++|+++++++    |  ++++
T Consensus        20 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~y~~~~~~~~l~~~la~~~----g--~~~~   92 (397)
T 2zyj_A           20 STIRELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKG-EVALQYSPTEGYAPLRAFVAEWI----G--VRPE   92 (397)
T ss_dssp             CHHHHHHHHHTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH-HHHTSCCCTTCCHHHHHHHHHHH----T--SCGG
T ss_pred             hHHHHHHhhccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcc-hhhhCCCCCCCCHHHHHHHHHHh----C--CChh
Confidence            3567777776665554    3332   2 4578888888887521 12345988888999999999999    3  5678


Q ss_pred             cEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccC
Q psy13922         78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHC  157 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~  157 (509)
                      +|++|+|+++++..++++++++||    +|+++.|+|.++...++..|.+++.++.+++   ++|++.|++.+++.    
T Consensus        93 ~v~~~~g~~~al~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~l~~~l~~~----  161 (397)
T 2zyj_A           93 EVLITTGSQQALDLVGKVFLDEGS----PVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDALEEVLKRE----  161 (397)
T ss_dssp             GEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHC----
T ss_pred             hEEEeccHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHHHHHHHhhc----
Confidence            999999999999999999998888    9999999999999999999999999998764   48999999999863    


Q ss_pred             CceEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        158 NPRAIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       158 ~~~~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                      ++++|+ +++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+.++..+..+.+    ..++++++|+
T Consensus       162 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~----~~~~i~~~s~  236 (397)
T 2zyj_A          162 RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA-RLPSLFELAREAG----YPGVIYLGSF  236 (397)
T ss_dssp             CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC-CCCCHHHHHHHHT----CCCEEEEEES
T ss_pred             CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC-CCCchhhhCcccC----CCeEEEEecc
Confidence            688875 689999999999999999999999999999999999999988643 3455665533210    0248999999


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      ||.+ | +|+|+||++   .++++++.+...... ..+.+.+                                  .+.+
T Consensus       237 sK~~-~-~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a  277 (397)
T 2zyj_A          237 SKVL-S-PGLRVAFAV---AHPEALQKLVQAKQGADLHTPML----------------------------------NQML  277 (397)
T ss_dssp             TTTT-C-GGGCCEEEE---CCHHHHHHHHHHHHHHHSSCCHH----------------------------------HHHH
T ss_pred             cccc-c-ccceeEEEe---cCHHHHHHHHHHHHhhcCCCCHH----------------------------------HHHH
Confidence            9999 7 999999998   689999988876542 2344666                                  4444


Q ss_pred             hhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCC
Q psy13922        316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS-IE-GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP  393 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~  393 (509)
                      +..+++     +   ..+ ++++++++.++++++.+.+.|++ +| |+.+..+.+++++|++++.           +. +
T Consensus       278 ~~~~l~-----~---~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~-----------~~-~  336 (397)
T 2zyj_A          278 VHELLK-----E---GFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK-----------GL-S  336 (397)
T ss_dssp             HHHHHT-----T---THH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST-----------TC-C
T ss_pred             HHHHHH-----h---CCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCC-----------CC-C
Confidence            444444     1   123 45788899999999999999987 67 6888888889999987751           11 2


Q ss_pred             cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCC
Q psy13922        394 SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQV  473 (509)
Q Consensus       394 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (509)
                      ..++...++ ++||.+.||..|+...                                              .+.+    
T Consensus       337 ~~~~~~~l~-~~gi~v~~g~~f~~~~----------------------------------------------~~~~----  365 (397)
T 2zyj_A          337 AEGLFRRAL-EENVAFVPGGPFFANG----------------------------------------------GGEN----  365 (397)
T ss_dssp             HHHHHHHHH-HTTEEEEESGGGCTTS----------------------------------------------CCTT----
T ss_pred             HHHHHHHHH-HCCCEEechHHhcCCC----------------------------------------------CCCC----
Confidence            444444554 5599999998876510                                              1222    


Q ss_pred             CCceeEEEEeec-ChHHHHHHHHHHHHHHHHHHh
Q psy13922        474 PGTYHFRTTILP-QPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       474 ~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~~~~  506 (509)
                          ++|++++. ++++|++++++|+++++++.+
T Consensus       366 ----~iRis~~~~~~~~i~~~~~~l~~~l~~~~~  395 (397)
T 2zyj_A          366 ----TLRLSYATLDREGIAEGVRRLGRALKGLLA  395 (397)
T ss_dssp             ----EEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----eEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                89999994 799999999999999988764

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=3.7e-39  Score=333.45  Aligned_cols=313  Identities=15%  Similarity=0.207  Sum_probs=240.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE--eCCHHHHHHHHHHHhh---cCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL--SAGASDGIKSVLKLLI---EDVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~---~~gd  101 (509)
                      .+.+.+++.+.+..   ....+|++..|.+++|+++++++..++|+.+++++|++  |+|++++++.++..+.   ++||
T Consensus        48 ~~~v~~a~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd  124 (401)
T 7aat_A           48 LNCVRKAEAMIAAK---KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSR  124 (401)
T ss_dssp             CHHHHHHHHHHHHT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCC
T ss_pred             hHHHHHHHHHhccc---ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCC
Confidence            34677777776654   23445999999999999999999988887788999987  9999999999988775   7888


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          +|+++.|+|.++...++..|.+++.++.++..++++|++.+++.+++.  .++++++++++||||||.+++.++++
T Consensus       125 ----~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~NPtG~~~~~~~l~  198 (401)
T 7aat_A          125 ----DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI--PEKSIILLHACAHNPTGVDPRQEQWK  198 (401)
T ss_dssp             ----EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS--CTTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred             ----EEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC--CCCcEEEEeCCCCCCCCCCCCHHHHH
Confidence                999999999999999999999999999875556799999988888752  12688899999999999999999999


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCC-ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH-
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGS-KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG-  259 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~-  259 (509)
                      +|+++|++||+++|+||+|.++.+++.. ...++..+. +.     ..++++++|+||.| |++|+|+||++++.++++ 
T Consensus       199 ~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~-----~~~~i~~~S~sK~~-~~~G~RiG~l~~~~~~~~~  271 (401)
T 7aat_A          199 ELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI-EQ-----GIDVVLSQSYAKNM-GLYGERAGAFTVICRDAEE  271 (401)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH-HT-----TCCCEEEEECTTTS-CCGGGCEEEEEEECSSHHH
T ss_pred             HHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHH-hc-----CCcEEEEecCCccc-ccccCceEEEEEEeCCHHH
Confidence            9999999999999999999999875310 122333322 22     23489999999999 799999999874445776 


Q ss_pred             ---HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch-HHHH
Q psy13922        260 ---VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY-EQFS  334 (509)
Q Consensus       260 ---~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~~  334 (509)
                         ++..+..... .+.+++..                                  ++.++..+++     ++.+ ..|.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~-----~~~~~~~~~  312 (401)
T 7aat_A          272 AKRVESQLKILIRPMYSNPPMN----------------------------------GARIASLILN-----TPELRKEWL  312 (401)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHH----------------------------------HHHHHHHHHH-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCChH----------------------------------HHHHHHHHhC-----CHHHHHHHH
Confidence               4455544433 33445554                                  3333332322     1111 2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ++++++++.++++++.+.+.|+++   +++.+..|++++|+|++++                 .+++..+++++||++.|
T Consensus       313 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~  375 (401)
T 7aat_A          313 VEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTK  375 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccC
Confidence            668899999999999999999987   2477778999999996543                 22357788899999863

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=2.9e-39  Score=337.70  Aligned_cols=346  Identities=14%  Similarity=0.201  Sum_probs=271.6

Q ss_pred             CCC-CC--CHHH--HHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc---EEEeCCHHHHHHHHH
Q psy13922         22 DDP-RF--PDDV--KQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD---VILSAGASDGIKSVL   93 (509)
Q Consensus        22 ~~~-~~--p~~v--~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~---i~~t~G~~~al~~~~   93 (509)
                      |.| .+  |+.+  ++++.+.+..   ....+|++..|..++|+++++++.+++ +++++++   |++|+|+++++..++
T Consensus        55 g~~~~~~~~~~~~~~~a~~~~~~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~  130 (430)
T 2x5f_A           55 GMATNKDGKMFASSLDAMFNDLTP---DEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVG  130 (430)
T ss_dssp             SSCEETTEECCCHHHHTTBSSCCG---GGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHH
T ss_pred             eeccCCCCchhhHHHHHHHHhcCc---ccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHH
Confidence            555 44  4555  5555444432   134569998899999999999998774 6678888   999999999999999


Q ss_pred             HHhhcCCCCCCCeEEEcCCCChhHHHHHHh-cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         94 KLLIEDVDGKKPGVLIPIPQYPLYSASLAE-FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        94 ~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      ++++++||    +|+++.|+|.++...++. .|.+++.++.+++. |.+|++.|++.+++..  .+++++++++||||||
T Consensus       131 ~~l~~~gd----~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~--~~~~~v~i~~p~nptG  203 (430)
T 2x5f_A          131 DLFVNQDD----TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYN--KDKVIMILNYPNNPTG  203 (430)
T ss_dssp             HHHCCTTC----EEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCC--SSEEEEEECSSCTTTC
T ss_pred             HHHhCCCC----EEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcC--CCCEEEEEcCCCCCCC
Confidence            99999888    999999999999999999 99999999987643 7899999999997621  1578999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH-----CCcEEEEcccCCcccccCCCccccHH-HHHHHhCCCCCCce---eEEEEecccccCCC
Q psy13922        173 QVLTKENIQDIIKFAHR-----EKLFLFADEVYQDNVYAEGSKFYSFK-KVLVEMGEPYKSME---LASFMSCSKGYMGE  243 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~-----~~i~lI~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---vi~i~S~SK~~~G~  243 (509)
                      .+++.+++++|+++|++     +|+++|+||+|.++.+++. .+.++. ++.. .     ..+   +++++|+||.+ |+
T Consensus       204 ~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~-~-----~~~~~~~i~~~s~sK~~-~~  275 (430)
T 2x5f_A          204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV-YTQSLFTALTN-L-----HSNAILPIRLDGATKEF-FA  275 (430)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS-CCSCHHHHHHT-T-----CCTTEEEEEEEEHHHHT-TC
T ss_pred             CcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc-cchHHHHHHhh-c-----cCCcceEEEEEecccCC-CC
Confidence            99999999999999999     9999999999999988643 344554 4421 1     234   78899999999 78


Q ss_pred             CCCeeEEEeeecCCHHHHHHHHHhhh-----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        244 CGLRGGYSEVINLDPGVKAMLHKSIS-----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      +|+|+||+++.+.++++++.+.....     .+.+++.+                                  .+.++..
T Consensus       276 ~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~  321 (430)
T 2x5f_A          276 WGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLP----------------------------------TQSAVKH  321 (430)
T ss_dssp             GGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHH
T ss_pred             CCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChH----------------------------------HHHHHHH
Confidence            99999999821128999998876553     24456666                                  4444444


Q ss_pred             ccC-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCC
Q psy13922        319 VVN-PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFN----SIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP  393 (509)
Q Consensus       319 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~  393 (509)
                      +++ .        ..+.++++++++.++++++.+.+.|+    ++ ++.+.++++++|+|++++            +. +
T Consensus       322 ~l~~~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~------------~~-~  379 (430)
T 2x5f_A          322 VLKNN--------KQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH------------DV-D  379 (430)
T ss_dssp             HHHSC--------HHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES------------SS-C
T ss_pred             HHccC--------hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC------------CC-C
Confidence            332 1        12444567799999999999999998    55 788888999999998775            11 2


Q ss_pred             cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCC
Q psy13922        394 SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQV  473 (509)
Q Consensus       394 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (509)
                      ..++...+++++||.+.||    .                                                .+      
T Consensus       380 ~~~~~~~l~~~~gi~v~~g----~------------------------------------------------~~------  401 (430)
T 2x5f_A          380 PEALRKHLIDKYSIGVIAL----N------------------------------------------------AT------  401 (430)
T ss_dssp             HHHHHHHHHHHHCEECEEC----S------------------------------------------------SS------
T ss_pred             HHHHHHHHHHhCCEEEecC----C------------------------------------------------CC------
Confidence            4455556666589999986    1                                                33      


Q ss_pred             CCceeEEEEee-cChHHHHHHHHHHHHHHHHH
Q psy13922        474 PGTYHFRTTIL-PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       474 ~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~  504 (509)
                          ++|++++ .+++++++++++|+++++++
T Consensus       402 ----~iRis~~~~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          402 ----DIRIAFSCVEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             ----EEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred             ----eEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence                8999999 99999999999999998764

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=4.4e-39  Score=332.10  Aligned_cols=313  Identities=17%  Similarity=0.190  Sum_probs=244.0

Q ss_pred             CHHHHHHHHH-HHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC--cEEEeCCHHHHHHHHHH--HhhcCCC
Q psy13922         27 PDDVKQRAQA-VLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ--DVILSAGASDGIKSVLK--LLIEDVD  101 (509)
Q Consensus        27 p~~v~~a~~~-~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~--~i~~t~G~~~al~~~~~--~l~~~gd  101 (509)
                      ++.+++++.+ ++..   ....+|++..|..++|+++++++...++..++++  +|++|+|+++++..+++  .+.++||
T Consensus        46 ~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd  122 (397)
T 3fsl_A           46 LQAVAEAEARLNAQP---HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPES  122 (397)
T ss_dssp             CHHHHHHHHHHHHSC---CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHhhccCc---cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCC
Confidence            4799999998 8876   3445599989999999999999976655444788  99999999999999954  5578888


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          +|+++.|+|.++...++..|.+++.++..++.++.+|++.|++.+++.  .++++++++++||||||.+++.++++
T Consensus       123 ----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~  196 (397)
T 3fsl_A          123 ----GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL--QAGSIVLLHPCCHNPTGADLTNDQWD  196 (397)
T ss_dssp             ----CEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC--CTTCEEEECSSSCTTTCCCCCHHHHH
T ss_pred             ----eEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC--CCCCEEEEeCCCCCCCCcCCCHHHHH
Confidence                999999999999999999999999999854446789999999999842  11578888899999999999999999


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|+++|+++|+++|+||+|.++.++++....++..+. +.     ..++++++|+||.+ |++|+|+||+++...+++++
T Consensus       197 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~-----~~~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~  269 (397)
T 3fsl_A          197 AVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA-SA-----GLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAA  269 (397)
T ss_dssp             HHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHH-HT-----TCCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHH
T ss_pred             HHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHH-hc-----CCCEEEEecccccc-cCcCCCeeEEEEecCCHHHH
Confidence            9999999999999999999999886433344555443 21     23489999999999 79999999997434577766


Q ss_pred             HHHHHh-----hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch-HHHHH
Q psy13922        262 AMLHKS-----ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY-EQFSR  335 (509)
Q Consensus       262 ~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~~~  335 (509)
                      +.+...     ...+.+++.+                                  ++.++..++.     ++.+ ..+.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~-----~~~l~~~~~~  310 (397)
T 3fsl_A          270 GRVLGQLKATVRRNYSSPPNF----------------------------------GAQVVAAVLN-----DEALKASWLK  310 (397)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSH----------------------------------HHHHHHHHHT-----SHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCHH----------------------------------HHHHHHHHhc-----CHHHHHHHHH
Confidence            654322     1234455655                                  4444444433     1111 12356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      +++++++.++++++.+.+.|++++   ++.+..+++++|+|++++                .+ .+..+++++||.+.|
T Consensus       311 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~l~~~gi~v~~  372 (397)
T 3fsl_A          311 EVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------------AA-QVDRLREEFGVYLIA  372 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----------------HH-HHHHHHHTTCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----------------HH-HHHHHHHhCCEEECC
Confidence            688999999999999999999874   688888899999996553                22 257788899999974

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.4e-38  Score=328.65  Aligned_cols=342  Identities=24%  Similarity=0.314  Sum_probs=273.4

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++ +.+..   . ...|++..|..++|+++++++...+|+++++++|++|+|+++++..+++++.++||    
T Consensus        57 ~~~~v~~a~-~~l~~---~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd----  127 (409)
T 2gb3_A           57 TPEVFFERI-YENKP---E-VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGD----  127 (409)
T ss_dssp             CCTHHHHHH-HHTCC---S-SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTC----
T ss_pred             CCHHHHHHH-HHHhc---C-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCC----
Confidence            367899999 87765   2 33598888899999999999998888888889999999999999999999998888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|.++...++..|.+++.++.+++.+|.+ ++.|++.+++     ++++|++++|+||||.++|.+++++|++
T Consensus       128 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~  201 (409)
T 2gb3_A          128 EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE-----RTKGIVLSNPCNPTGVVYGKDEMRYLVE  201 (409)
T ss_dssp             EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc-----CCeEEEECCCCCCCCCCcCHHHHHHHHH
Confidence            999999999999999999999999999876445666 8888888765     7899999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GVKAML  264 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~~~~l  264 (509)
                      +|+++|+++|+||+|.++.+++  .+.++  + .+.     ..++++++|+||.+ |++|+|+||++   .++ ++++.+
T Consensus       202 ~~~~~~~~li~Dea~~~~~~~~--~~~~~--~-~~~-----~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~l~~~l  267 (409)
T 2gb3_A          202 IAERHGLFLIVDEVYSEIVFRG--EFASA--L-SIE-----SDKVVVIDSVSKKF-SACGARVGCLI---TRNEELISHA  267 (409)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSS--CCCCG--G-GSC-----CTTEEEEEESTTTT-TCGGGCCEEEE---CSCHHHHHHH
T ss_pred             HHHHcCCEEEEECcccccccCC--CCCCc--c-ccC-----CCCEEEEecchhcc-CCccceEEEEE---ECcHHHHHHH
Confidence            9999999999999999988764  23333  1 111     12378889999999 79999999998   565 899988


Q ss_pred             HHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHH
Q psy13922        265 HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL  344 (509)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (509)
                      ......+.+++.+                                  .+.++..+++.          ...+++++++.+
T Consensus       268 ~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~----------~~~~~~~~~~~~  303 (409)
T 2gb3_A          268 MKLAQGRLAPPLL----------------------------------EQIGSVGLLNL----------DDSFFDFVRETY  303 (409)
T ss_dssp             HHHHHHSCCCCHH----------------------------------HHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHhccCCCCHH----------------------------------HHHHHHHHHhc----------cHHHHHHHHHHH
Confidence            8765532255555                                  44444444431          123477888899


Q ss_pred             HHHHHHHHHHHhcCCCCee-ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh-----cCeEEecCCCCCCC
Q psy13922        345 KQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER-----TGICIVPGAGFGQV  418 (509)
Q Consensus       345 ~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~-----~gI~v~pg~~f~~~  418 (509)
                      +++++.+.+.|+++ |+.+ ..+.+++++|++++            +. +...+...++++     +||.+.||..|+..
T Consensus       304 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~------------~~-~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~  369 (409)
T 2gb3_A          304 RERVETVLKKLEEH-GLKRFTKPSGAFYITAELP------------VE-DAEEFARWMLTDFNMDGETTMVAPLRGFYLT  369 (409)
T ss_dssp             HHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECS------------SS-CHHHHHHHHHHSCCBTTEEEECEEGGGGCSS
T ss_pred             HHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeC------------CC-CHHHHHHHHHhccccccCcEEEeCchHhCCC
Confidence            99999999999998 8888 77888999997764            11 244555566666     59999999877651


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR  498 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~  498 (509)
                      ++                                             .+.+        ++|++++.++++|++++++|+
T Consensus       370 ~~---------------------------------------------~~~~--------~iRis~~~~~e~i~~~~~~l~  396 (409)
T 2gb3_A          370 PG---------------------------------------------LGKK--------EIRIACVLEKDLLSRAIDVLM  396 (409)
T ss_dssp             TT---------------------------------------------TTSS--------EEEEECCSCHHHHHHHHHHHH
T ss_pred             CC---------------------------------------------CCCC--------EEEEEeCCCHHHHHHHHHHHH
Confidence            00                                             1222        999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy13922        499 EFHEEFLAK  507 (509)
Q Consensus       499 ~~~~~~~~~  507 (509)
                      ++++++++.
T Consensus       397 ~~l~~~~~~  405 (409)
T 2gb3_A          397 EGLKMFCSS  405 (409)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhhc
Confidence            999887654

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=1.7e-38  Score=326.31  Aligned_cols=351  Identities=19%  Similarity=0.292  Sum_probs=273.3

Q ss_pred             HHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEE
Q psy13922          7 LSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI   80 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~   80 (509)
                      .++.+......++.+    +.|.+  |+.+.+++.+++..     .+.|++..|..++|+++++++.      +++++|+
T Consensus        14 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~y~~~~~~~~l~~~la~~~~------~~~~~v~   82 (381)
T 1v2d_A           14 IFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEFA------VEPESVV   82 (381)
T ss_dssp             CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHHHHHT------SCGGGEE
T ss_pred             HHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHHH-----hcCCCCCCCCHHHHHHHHHhcC------CChhhEE
Confidence            345555544333332    44444  68899999888865     2358888888999999999973      5678899


Q ss_pred             EeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC--CCCCCCCCHHHHHHHHHhhhccCC
Q psy13922         81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD--ESKQWGLPISELERSITEARKHCN  158 (509)
Q Consensus        81 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~L~~~i~~~~~~~~  158 (509)
                      +|+|+++++..+++++.++||    .|+++.|+|.++...++..|.+++.++.+  ++ ++.+|++.|++.+++     +
T Consensus        83 ~~~g~~~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~-----~  152 (381)
T 1v2d_A           83 VTSGATEALYVLLQSLVGPGD----EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKALTP-----R  152 (381)
T ss_dssp             EESSHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHHHHHTTCCT-----T
T ss_pred             EcCChHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHHHHHHhcCc-----C
Confidence            999999999999999988888    99999999999999999999999999986  33 368899999998865     7


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      +++|++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+ +. ...++..+  .      ..+++++.|+||
T Consensus       153 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~-~~~~~~~~--~------~~~~~~~~s~sK  222 (381)
T 1v2d_A          153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GE-RPRRLREF--A------PERTFTVGSAGK  222 (381)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SS-CCCCHHHH--C------TTTEEEEEEHHH
T ss_pred             CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CC-CCCCHHHh--c------CCCEEEEeechh
Confidence            99999999999999999999999999999999999999999999887 32 34455544  1      123788899999


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      .+ |++|+|+||++   .++++++.+..... ..++++.+                                  .+.++.
T Consensus       223 ~~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~  264 (381)
T 1v2d_A          223 RL-EATGYRVGWIV---GPKEFMPRLAGMRQWTSFSAPTP----------------------------------LQAGVA  264 (381)
T ss_dssp             HT-TCGGGCCEEEE---CCTTTHHHHHHHHHHHTSSCCHH----------------------------------HHHHHH
T ss_pred             hc-CCcccceEEEE---eCHHHHHHHHHHHhhcccCCCcH----------------------------------HHHHHH
Confidence            99 78999999998   68888888876554 23455555                                  343333


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .+++        ...+.++++++++.++++++++.+.|++. |+++..+.+++++|++++  .          .  +   
T Consensus       265 ~~l~--------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~----------~--~---  318 (381)
T 1v2d_A          265 EALK--------LARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--G----------W--D---  318 (381)
T ss_dssp             HHHH--------HHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT--T----------C--C---
T ss_pred             HHHh--------CcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecC--h----------H--h---
Confidence            3322        01113347888899999999999999986 888888888999997765  1          1  1   


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +..+++++||.+.||..|....                                              .+.+        
T Consensus       319 ~~~~l~~~gi~v~~g~~~~~~~----------------------------------------------~~~~--------  344 (381)
T 1v2d_A          319 AFRLVEEARVALIPASAFYLED----------------------------------------------PPKD--------  344 (381)
T ss_dssp             HHHHHHHTCEECEEGGGGCSSS----------------------------------------------CCTT--------
T ss_pred             HHHHHHhCCEEEecchHhCCCC----------------------------------------------CCCC--------
Confidence            5678889999999998876510                                              1122        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHHHHHHh
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      ++|++++.++++|++++++|++++++.++
T Consensus       345 ~iRi~~~~~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          345 LFRFAFCKTEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHHHC-----
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhccc
Confidence            89999999999999999999999877654

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=3e-38  Score=329.74  Aligned_cols=368  Identities=15%  Similarity=0.151  Sum_probs=275.9

Q ss_pred             HHHHHHHHhhcCCCCC----CCCCC-----CHHHHHHH--HHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCC
Q psy13922          6 SLSLQVLALVSLPQLF----DDPRF-----PDDVKQRA--QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA   74 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~-----p~~v~~a~--~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~   74 (509)
                      +.++++..+...+..+    |.|+.     ++.+.+++  .+++... .....+|++..|.+++|+++++++      ++
T Consensus        21 ~~~~~~~~~~~~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~~------~~   93 (427)
T 3ppl_A           21 DIKRKFDELKSKNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAAD-GTDVRNYGGLDGIVDIRQIWADLL------GV   93 (427)
T ss_dssp             HHHHHHHHHHHTCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTT-SCBTTSSCCSSCCHHHHHHHHHHH------TS
T ss_pred             HHHHHHHHhhcCCceEecCCCCCChHHCCCcHHHHHHhhhHHHhhcc-chhhcCCCCCCCcHHHHHHHHHHh------CC
Confidence            3555555555555543    55543     12455555  4444432 233556999999999999999999      26


Q ss_pred             CCCcEEEeCCHHHHH--HHHHHHhhc--C----------CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCC
Q psy13922         75 DWQDVILSAGASDGI--KSVLKLLIE--D----------VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG  140 (509)
Q Consensus        75 ~~~~i~~t~G~~~al--~~~~~~l~~--~----------gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~  140 (509)
                      ++++|++|+|+++++  +.+++++++  +          ||    +|+++.|+|..+...++..|++++.+|.+++   +
T Consensus        94 ~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd----~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g  166 (427)
T 3ppl_A           94 PVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETV----KWICPVPGYDRHFSITERFGFEMISVPMNED---G  166 (427)
T ss_dssp             CGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCC----EEEEEESCCHHHHHHHHHTTCEEEEEEEETT---E
T ss_pred             CcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCC----EEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---C
Confidence            788999999999999  588888887  6          66    9999999999999999999999999999865   5


Q ss_pred             CCHHHHHHHHHhhhccCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHH-HHCCcEEEEcccCCcccccCCC-ccccHHHH
Q psy13922        141 LPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFA-HREKLFLFADEVYQDNVYAEGS-KFYSFKKV  217 (509)
Q Consensus       141 ~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NPtG~~~s~~~l~~l~~ia-~~~~i~lI~Deay~~~~~~~~~-~~~~~~~~  217 (509)
                      +|++.|+++++..    ++++|+++ +||||||.+++.+++++|+++| +++|++||+||+|.++.+.+.. ...++.++
T Consensus       167 ~d~~~l~~~l~~~----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  242 (427)
T 3ppl_A          167 PDMDAVEELVKNP----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGL  242 (427)
T ss_dssp             ECHHHHHHHTTST----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHH
T ss_pred             CCHHHHHHHHhcC----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhh
Confidence            8999999998532    78998865 8999999999999999999999 9999999999999998776532 23455555


Q ss_pred             HHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHH
Q psy13922        218 LVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVK  296 (509)
Q Consensus       218 ~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (509)
                      ....+.   ..++++++||||..  ++|+|+||++   .++++++.+..... ...+++.+                   
T Consensus       243 ~~~~~~---~~~~i~~~S~SK~~--~~G~r~G~~~---~~~~l~~~~~~~~~~~~~~~~~~-------------------  295 (427)
T 3ppl_A          243 GEAAGN---PNRFWAFTSTSKIT--LAGAGVSFFL---TSAENRKWYTGHAGIRGIGPNKV-------------------  295 (427)
T ss_dssp             HHHTTC---TTSEEEEEESTTTS--CTTSSCEEEE---CCHHHHHHHHHHHHHHCSCCCHH-------------------
T ss_pred             hhccCC---CCcEEEEechhhcc--CcCccEEEEE---cCHHHHHHHHHHhhcccCCCCHH-------------------
Confidence            321111   23489999999995  4999999998   79999999987765 34566666                   


Q ss_pred             HHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCeeccCCceeEE
Q psy13922        297 QRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS----IEGMSCNPVQGAMYA  372 (509)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~g~~~  372 (509)
                                     .|.++..+++     +  ...+.+++++.++.++++++.+.+.|.+    ++++.+..|++++|+
T Consensus       296 ---------------~q~~~~~~l~-----~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~  353 (427)
T 3ppl_A          296 ---------------NQLAHARYFG-----D--AEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFI  353 (427)
T ss_dssp             ---------------HHHHHHHHHC-----S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCE
T ss_pred             ---------------HHHHHHHHHh-----C--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEE
Confidence                           5555555444     1  1234455778888888888888777755    335777888999999


Q ss_pred             eecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec-CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchh
Q psy13922        373 FPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP-GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVL  451 (509)
Q Consensus       373 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p-g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (509)
                      |++++-            . +... +.+.|.++||.++| |..|.....                               
T Consensus       354 ~~~~~~------------~-~~~~-~~~~l~~~gv~v~~~g~~~~~~~~-------------------------------  388 (427)
T 3ppl_A          354 SLDVVP------------G-TASR-VAELAKEAGIALTGAGSSYPLRQD-------------------------------  388 (427)
T ss_dssp             EEECST------------T-CHHH-HHHHHHHTTEECCCTTTTSGGGCC-------------------------------
T ss_pred             EEECCc------------c-hHHH-HHHHHHHCCCEEecCcCcCCCCCC-------------------------------
Confidence            987751            1 2344 45677888999999 444442000                               


Q ss_pred             hhhhhhhcccccccCCCCCCCCCCceeEEEEeec-ChHHHHHHHHHHHHHHHHHHhh
Q psy13922        452 YAFESLERTGICIVPGAGFGQVPGTYHFRTTILP-QPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                                    .+.+        ++|||++. ++++|++++++|++++++...+
T Consensus       389 --------------~~~~--------~~Ris~~~~~~~~i~~~~~~l~~~l~~~~~~  423 (427)
T 3ppl_A          389 --------------PENK--------NLRLAPSLPPVEELEVAMDGVATCVLLAAAE  423 (427)
T ss_dssp             --------------TTSC--------EEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCC--------eEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                          1222        99999995 8999999999999999877543

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=1.8e-38  Score=329.62  Aligned_cols=368  Identities=18%  Similarity=0.229  Sum_probs=257.2

Q ss_pred             hhcCCCCC----CCCCCCHH----HHHHHHHHHhccc-CCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCC
Q psy13922         14 LVSLPQLF----DDPRFPDD----VKQRAQAVLDGCR-GQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG   84 (509)
Q Consensus        14 ~~~~~~~~----~~~~~p~~----v~~a~~~~l~~~~-~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G   84 (509)
                      ....++++    |.|..++.    +.+++.+.+.+.. ......|++..|.+++|+++++++.+++|+++++++|++|+|
T Consensus        27 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G  106 (417)
T 3g7q_A           27 GLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNG  106 (417)
T ss_dssp             -----CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred             hccCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCC
Confidence            33445554    67777554    4444444444310 012235999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC-CCCCeEEEc-CCCChhHHHHHHhc------CCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         85 ASDGIKSVLKLLIEDVD-GKKPGVLIP-IPQYPLYSASLAEF------NMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        85 ~~~al~~~~~~l~~~gd-~~~~~Vlv~-~p~y~~~~~~~~~~------g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      +++++++++++++++|| +.++.|+++ .|+|.++...+...      +..+..++.+. .+|.+|++.|+  +.+    
T Consensus       107 ~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~----  179 (417)
T 3g7q_A          107 SQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGE----  179 (417)
T ss_dssp             HHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCT----
T ss_pred             cHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--ccc----
Confidence            99999999999998864 223378887 99999988765322      34444444321 24578999987  444    


Q ss_pred             CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       157 ~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                       ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+....  .+.+.   .++     ...++++++|+
T Consensus       180 -~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~--~~~~~---~~~-----~~~~~i~~~s~  248 (417)
T 3g7q_A          180 -ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI--IFSEA---RPL-----WNPNIILCMSL  248 (417)
T ss_dssp             -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC--BCSCC---CCC-----CCTTEEEEEES
T ss_pred             -CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc--ccccc---ccC-----CCCCEEEEEec
Confidence             79999999999999999999999999999999999999999998643211  11110   011     12348889999


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      || + |++|+|+||++   .++++++.+..... ...+++.+                                  .+.+
T Consensus       249 sK-~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~  289 (417)
T 3g7q_A          249 SK-L-GLPGSRCGIII---ANDKTITAIANMNGIISLAPGGM----------------------------------GPAM  289 (417)
T ss_dssp             GG-G-TCTTSCCEEEE---CCHHHHHHHHHHHHHHCCCCCSH----------------------------------HHHH
T ss_pred             hh-c-cCCCcceEEEE---eCHHHHHHHHHhhcceeeCCCcH----------------------------------HHHH
Confidence            99 6 67999999998   79999999987765 33455666                                  4444


Q ss_pred             hhcccCCCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CC--CCeeccCCceeEEeecCCCCHHHHHHHhhcCC
Q psy13922        316 MDCVVNPPQPGEPSYEQFSREKQS-VLDSLKQRAKMVADTFNS-IE--GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGK  391 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  391 (509)
                      +..+++     +..+.   ++..+ +++.++++++.+.+.|.+ ++  ++.+..+.+++++|++++..          ++
T Consensus       290 ~~~~l~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~----------~~  351 (417)
T 3g7q_A          290 MCEMIK-----RNDLL---RLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL----------PI  351 (417)
T ss_dssp             HHHHHH-----TTCHH---HHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTC----------SS
T ss_pred             HHHHHc-----CcchH---HHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCC----------CC
Confidence            444433     11222   22344 777888888888888876 55  47778889999999877520          11


Q ss_pred             CCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCC
Q psy13922        392 CPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFG  471 (509)
Q Consensus       392 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (509)
                       +...+ ...|.++||.++||..|+..                                               ....+ 
T Consensus       352 -~~~~l-~~~l~~~gi~v~~g~~f~~~-----------------------------------------------~~~~~-  381 (417)
T 3g7q_A          352 -TTELL-YQRLKARGVLMVPGHYFFPG-----------------------------------------------LDKPW-  381 (417)
T ss_dssp             -CHHHH-HHHHHHTTEECEEGGGGCTT-----------------------------------------------BSSCC-
T ss_pred             -CHHHH-HHHHHHCCEEEECchhhCCC-----------------------------------------------Ccccc-
Confidence             23444 45557889999999988762                                               00000 


Q ss_pred             CCCCceeEEEEeecChHHHHHHHHHHHHHHHHHHhh
Q psy13922        472 QVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       472 ~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                       ..+..++|||++.++++|++++++|++++++++++
T Consensus       382 -~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~~~~  416 (417)
T 3g7q_A          382 -PHTHQCMRMNYVPEPDKIEAGVKILAEEIERAWRE  416 (417)
T ss_dssp             -GGGGGEEEEESCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHhc
Confidence             00123999999999999999999999999887653

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=2.9e-38  Score=329.21  Aligned_cols=372  Identities=15%  Similarity=0.186  Sum_probs=276.3

Q ss_pred             HHHHHHHHhhcCCCCC----CCCC-----CCHHHHHHHH--HHHhcccCCCcccC-CCCcchHHHHHHHHHHHhhhcCCC
Q psy13922          6 SLSLQVLALVSLPQLF----DDPR-----FPDDVKQRAQ--AVLDGCRGQSVGSY-TDSPGIEIIRRHVAQYISRRDGQP   73 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~-----~p~~v~~a~~--~~l~~~~~~~~~~Y-~~~~g~~~lr~~va~~l~~~~g~~   73 (509)
                      +.++++..+...+..+    |.|+     .|+.+.+++.  +.+..  +....+| ++..|.+++|+++++++.      
T Consensus        13 ~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~Yp~~~~g~~~lr~~ia~~~~------   84 (423)
T 3ez1_A           13 LARQAYEAFKARGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD--GLDLRNYPGGVAGLPSARALFAGYLD------   84 (423)
T ss_dssp             HHHHHHHHHHHHTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET--TEETTSSCSCTTCCHHHHHHHHHHTT------
T ss_pred             HHHHHHHHhhcCCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc--chhhhCCCCCCCChHHHHHHHHHHhC------
Confidence            4566666766655554    6777     3557888775  44442  2334669 888999999999999982      


Q ss_pred             CCCCcEEEeCCHHHHHH--HHHHHhhc--CCCC-----CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHH
Q psy13922         74 ADWQDVILSAGASDGIK--SVLKLLIE--DVDG-----KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS  144 (509)
Q Consensus        74 ~~~~~i~~t~G~~~al~--~~~~~l~~--~gd~-----~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  144 (509)
                      +++++|++|+|+++++.  .++++++.  +|+.     .+++|+++.|+|.++...++..|.+++.++.+++   ++|++
T Consensus        85 ~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~  161 (423)
T 3ez1_A           85 VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVD  161 (423)
T ss_dssp             SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHH
T ss_pred             CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHH
Confidence            67889999999999998  89999887  7310     0129999999999999999999999999999865   58999


Q ss_pred             HHHHHHH-hhhccCCceEEEE-eCCCCCCCCCCCHHHHHHHHHHH-HHCCcEEEEcccCCcccccC-C-CccccHHHHHH
Q psy13922        145 ELERSIT-EARKHCNPRAIVI-INPGNPTGQVLTKENIQDIIKFA-HREKLFLFADEVYQDNVYAE-G-SKFYSFKKVLV  219 (509)
Q Consensus       145 ~L~~~i~-~~~~~~~~~~ivi-~~p~NPtG~~~s~~~l~~l~~ia-~~~~i~lI~Deay~~~~~~~-~-~~~~~~~~~~~  219 (509)
                      .|+++++ ..    ++++|++ ++||||||.+++.+++++|+++| +++|++||+||+|..+.+.+ + ....++.++..
T Consensus       162 ~l~~~l~~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  237 (423)
T 3ez1_A          162 AVERLAGTDP----SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR  237 (423)
T ss_dssp             HHHHHHHSCT----TEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHH
T ss_pred             HHHHHHhhCC----CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhh
Confidence            9999996 22    7899976 59999999999999999999999 99999999999999766654 2 23446665532


Q ss_pred             HhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHH
Q psy13922        220 EMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQR  298 (509)
Q Consensus       220 ~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (509)
                      ..+.   ..++++++||||..  ++|+|+||++   .++++++.+..... ...+++.+                     
T Consensus       238 ~~~~---~~~~i~~~S~sK~~--~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~---------------------  288 (423)
T 3ez1_A          238 DAGY---PDRAFVFASTSKIT--FAGAGLGFVA---SSEDNIRWLSKYLGAQSIGPNKV---------------------  288 (423)
T ss_dssp             HHTC---TTSEEEEEESTTTS--CSSSSCEEEE---ECHHHHHHHHHHHHHSCSCCCHH---------------------
T ss_pred             ccCC---CCeEEEEeCchhhc--cCCcceEEEE---eCHHHHHHHHHHHhhhccCCCHH---------------------
Confidence            2111   23489999999985  4899999998   79999999988765 44566666                     


Q ss_pred             HHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC-CCeeccCCceeEEe
Q psy13922        299 AQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS----IE-GMSCNPVQGAMYAF  373 (509)
Q Consensus       299 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~-g~~~~~~~~g~~~~  373 (509)
                                   .|.++..+++     + ....+.+++++.++.++++++.+.+.|.+    ++ ++.+..+.+++|+|
T Consensus       289 -------------~~~a~~~~l~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~  349 (423)
T 3ez1_A          289 -------------EQARHVKFLT-----E-YPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFIS  349 (423)
T ss_dssp             -------------HHHHHHHHHH-----H-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEE
T ss_pred             -------------HHHHHHHHHH-----h-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEE
Confidence                         3444333332     0 00223344677777777777776666654    43 36777889999999


Q ss_pred             ecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec-CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhh
Q psy13922        374 PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP-GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLY  452 (509)
Q Consensus       374 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p-g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (509)
                      ++++-            .  +...+...+.++||.++| |..|+....                                
T Consensus       350 ~~~~~------------~--~~~~~~~~l~~~gv~v~~~g~~~~~~~~--------------------------------  383 (423)
T 3ez1_A          350 LDTAE------------P--VADRVVKLAEAAGVSLTPAGATYPAGQD--------------------------------  383 (423)
T ss_dssp             EEESS------------S--CHHHHHHHHHHTTEECCCTTTTSSTTCC--------------------------------
T ss_pred             EECCC------------C--cHHHHHHHHHHCCcEEecCcccccCCCC--------------------------------
Confidence            87751            1  223356778889999999 666653100                                


Q ss_pred             hhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        453 AFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                                   .+        ..++||+++ .++++|++++++|++++++...+
T Consensus       384 -------------~~--------~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~~  418 (423)
T 3ez1_A          384 -------------PH--------NRNLRLAPTRPPVEEVRTAMQVVAACIRLATEE  418 (423)
T ss_dssp             -------------SS--------SCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CC--------CCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                         12        229999999 59999999999999999876543

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=3.9e-38  Score=328.62  Aligned_cols=355  Identities=15%  Similarity=0.171  Sum_probs=265.2

Q ss_pred             CCCC---C--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHH--HHHHH
Q psy13922         22 DDPR---F--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGI--KSVLK   94 (509)
Q Consensus        22 ~~~~---~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al--~~~~~   94 (509)
                      |.|+   |  |+.+++++.+.+.........+|++..|.+++|+++++++.      +++++|++|+|+++++  ..+++
T Consensus        40 g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~l~~~~~  113 (422)
T 3d6k_A           40 GKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISW  113 (422)
T ss_dssp             CSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------CCGGGEEECSSCHHHHHHHHHHH
T ss_pred             CCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------CChhHEEEecchHHHHHHHHHHH
Confidence            5664   4  44666665443211112235569999999999999999992      6788999999999997  77888


Q ss_pred             HhhcC---C-------CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE-
Q psy13922         95 LLIED---V-------DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV-  163 (509)
Q Consensus        95 ~l~~~---g-------d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv-  163 (509)
                      .+..+   |       |  +++|+++.|+|.++...++..|++++.+|.+++   ++|++.|++.+++.    ++++|+ 
T Consensus       114 ~l~~~~~~g~~~~~~~d--~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~----~~~~v~~  184 (422)
T 3d6k_A          114 SYTWGNNDSSRPWSAEE--KVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDP----QVKGMWT  184 (422)
T ss_dssp             HHHHCCTTCSSCGGGSS--CCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTST----TEEEEEE
T ss_pred             HhcCcccccccccccCC--CCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcC----CCeEEEE
Confidence            88765   2       2  237999999999999999999999999999765   48999999998753    689988 


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHH-HCCcEEEEcccCCcccccC-CCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        164 IINPGNPTGQVLTKENIQDIIKFAH-REKLFLFADEVYQDNVYAE-GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       164 i~~p~NPtG~~~s~~~l~~l~~ia~-~~~i~lI~Deay~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +++||||||.+++.+++++|+++|+ ++|++||+||+|.++.+.. +..+.++.++....+.   ..++++++||||.. 
T Consensus       185 ~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~S~SK~~-  260 (422)
T 3d6k_A          185 VPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGN---PNRFWFMSSTSKIT-  260 (422)
T ss_dssp             CCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTC---TTCEEEEEESTTTS-
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCC---CCcEEEEcChhhhc-
Confidence            5899999999999999999999999 9999999999998633322 2234455444221111   23589999999984 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhccc
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV  320 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~  320 (509)
                       ++|+|+||++   +++++++.+..... ...+++.+                                  +|.++..++
T Consensus       261 -~~GlriG~~~---~~~~l~~~l~~~~~~~~~~~~~~----------------------------------~q~a~~~~l  302 (422)
T 3d6k_A          261 -HAGSGVSFFA---SSKENIEWYASHANVRGIGPNKL----------------------------------NQLAHAQFF  302 (422)
T ss_dssp             -CTTSSCEEEE---CCHHHHHHHHHHHHHHCSCCCHH----------------------------------HHHHHHHHH
T ss_pred             -CcccceEEEE---eCHHHHHHHHHHHHhhcCCCCHH----------------------------------HHHHHHHHH
Confidence             4999999998   78999999987665 34566777                                  555555555


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS----IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      +     +  ...+.++++++++.++++++.+.+.|.+    ++++.+..|++++|+|++++.           +  +.+.
T Consensus       303 ~-----~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~-----------~--~~~~  362 (422)
T 3d6k_A          303 G-----D--VAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVP-----------G--TASR  362 (422)
T ss_dssp             C-----S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEEST-----------T--CHHH
T ss_pred             h-----C--cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCC-----------C--CHHH
Confidence            4     1  1224455788888888888888887765    333677788899999987751           1  2333


Q ss_pred             HHHHHHhhcCeEEec-CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCC
Q psy13922        397 YAFELLERTGICIVP-GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPG  475 (509)
Q Consensus       397 ~~~~ll~~~gI~v~p-g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (509)
                       +..++.++||.++| |..|.....                                             .+.+      
T Consensus       363 -~~~~l~~~gV~v~~~g~~f~~~~~---------------------------------------------~~~~------  390 (422)
T 3d6k_A          363 -VVELAKEAGIALTGAGSSFPLHND---------------------------------------------PNNE------  390 (422)
T ss_dssp             -HHHHHHHTTEECCCTTTTSGGGCC---------------------------------------------TTSC------
T ss_pred             -HHHHHHHCCeEEEcCccccCCCCC---------------------------------------------CCCC------
Confidence             56788899999999 455542000                                             1122      


Q ss_pred             ceeEEEEee-cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        476 TYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       476 ~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                        ++|||++ .+++++++++++|+++++++.++
T Consensus       391 --~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~  421 (422)
T 3d6k_A          391 --NIRLAPSLPPVAELEVAMDGFATCVLMAALE  421 (422)
T ss_dssp             --EEEECCSSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --eEEEecCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence              9999999 79999999999999999887654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=1.2e-38  Score=342.61  Aligned_cols=374  Identities=19%  Similarity=0.278  Sum_probs=263.4

Q ss_pred             CCCCCC-HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHH-hhhcCCCC---CCCcEEEeCCHHHHHHHHHHH-
Q psy13922         22 DDPRFP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYI-SRRDGQPA---DWQDVILSAGASDGIKSVLKL-   95 (509)
Q Consensus        22 ~~~~~p-~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l-~~~~g~~~---~~~~i~~t~G~~~al~~~~~~-   95 (509)
                      |.|.+| +.+++++.+.+..      .+|+++.|..++|+++++++ .++++...   ++++|++|+|+++++..++++ 
T Consensus       112 g~~~~~~~~~~~al~~~~~~------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l  185 (546)
T 2zy4_A          112 DQLGLDPAAFLHEMVDGILG------CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESL  185 (546)
T ss_dssp             HTSCCCHHHHHHHHHHHHHT------CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHhhhc------CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHh
Confidence            456665 4566666555421      35999999899999987655 55444322   468999999999999999988 


Q ss_pred             ----hhcCCCCCCCeEEEcCCCChhHHHHHHh--cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         96 ----LIEDVDGKKPGVLIPIPQYPLYSASLAE--FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        96 ----l~~~gd~~~~~Vlv~~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                          ++++||    .|+++.|+|.+|...+..  .|.+++.++.+++++|.+|++.|++.+..     ++++|++++|||
T Consensus       186 ~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~k~v~l~~p~N  256 (546)
T 2zy4_A          186 KLNGLLKAGD----KVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP-----AIKIFFCVNPSN  256 (546)
T ss_dssp             HHTTSSCTTC----EEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST-----TEEEEEEESSCS
T ss_pred             hhhhcCCCCC----EEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC-----CCeEEEEECCCC
Confidence                467888    999999999999988654  47999999998877889999999887654     799999999999


Q ss_pred             CCCCCCCHHHHHHHHHHH--HHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        170 PTGQVLTKENIQDIIKFA--HREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia--~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      |||.+++.+++++|+++|  +++|++||+||+|.+|.++    +.++.+..+        .++|+++||||.+ |++|+|
T Consensus       257 PtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~----~~s~~~~~~--------~~~i~~~S~SK~~-g~~GlR  323 (546)
T 2zy4_A          257 PPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD----FQSLFAICP--------ENTLLVYSFSKYF-GATGWR  323 (546)
T ss_dssp             SSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT----CCCHHHHCG--------GGEEEEEESTTTT-TCGGGC
T ss_pred             CCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc----CcCHHHhCC--------CCEEEEEeCcccc-CCCCcc
Confidence            999999999999999999  7899999999999998753    345554421        2489999999999 799999


Q ss_pred             eEEEeeecCCH-HHHHHHHHhh------------hccc-CcchhhhhccccccCCCCCchhHHHHHHHh--hhcccCccc
Q psy13922        248 GGYSEVINLDP-GVKAMLHKSI------------SAML-CPTVLALVSLPQLFDDPRFPDDVKQRAQAV--LDGCRGQSV  311 (509)
Q Consensus       248 ~G~v~~~~~~~-~~~~~l~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  311 (509)
                      +||++   +++ ++++.+.+..            ..+. .+...            +|.+.++..+.+.  .........
T Consensus       324 iG~~~---~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~------------~~~~~~~~~~~~~~~~~~~~~s~~  388 (546)
T 2zy4_A          324 LGVVA---AHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSL------------KFIDRLVADSRAVALNHTAGLSTP  388 (546)
T ss_dssp             EEEEE---EESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGC------------CHHHHHHHHTTTTTTGGGCSSCHH
T ss_pred             eEEEE---ECCHHHHHHHHhhcchhhhHHHHHHhhhccccccch------------hhhhhhhhhhHHHHhhccCCCCcH
Confidence            99998   455 4777763211            0000 00000            0000000000000  000000011


Q ss_pred             ccchh-----hcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCC------CH
Q psy13922        312 GQTVM-----DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL------PA  380 (509)
Q Consensus       312 ~~~al-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~------~~  380 (509)
                      .|.++     ..+++.          ...+.+++++.++++++.+.+.|. + ++.+.+++++||+|++++.      ..
T Consensus       389 ~Q~a~a~~a~~all~~----------~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~  456 (546)
T 2zy4_A          389 QQVQMALFSLFALMDE----------ADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGE  456 (546)
T ss_dssp             HHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccH
Confidence            33322     222221          123367888899999999999886 5 5666688999999987641      00


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcc
Q psy13922        381 KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERT  460 (509)
Q Consensus       381 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (509)
                      ++..+.. .+. ++.+++.++++++||.++||..|+..                                          
T Consensus       457 ~~~~wl~-~~~-~~~~~l~~ll~~~gV~v~pG~~F~~~------------------------------------------  492 (546)
T 2zy4_A          457 AFSEWAV-KQS-STGDMLFRIADETGIVLLPGRGFGSN------------------------------------------  492 (546)
T ss_dssp             HHHHHHH-HHC-CHHHHHHHHHHHHSCCCEESSCTTCS------------------------------------------
T ss_pred             HHHHHhh-ccC-CHHHHHHHHHHHCCEEEeCccccCCC------------------------------------------
Confidence            1111111 122 24455678899999999999998761                                          


Q ss_pred             cccccCCCCCCCCCCceeEEEEeec-ChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        461 GICIVPGAGFGQVPGTYHFRTTILP-QPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                           .  +        +|||+++. +++++++++++|+++++++.++|+
T Consensus       493 -----~--~--------~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~~~  527 (546)
T 2zy4_A          493 -----R--P--------SGRASLANLNEYEYAAIGRALRKMADELYAEYS  527 (546)
T ss_dssp             -----S--C--------EEEEESSSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----C--C--------eEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2  2        89999995 899999999999999999999886

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=7.6e-39  Score=343.70  Aligned_cols=380  Identities=18%  Similarity=0.237  Sum_probs=267.9

Q ss_pred             CCCCC-CHHHHHHHHHHHhcccCCCcccCC-CCcchHHHHHHHHHHHhhh-cC-CCCC-CCcEEEeCCHHHHHHHHHHH-
Q psy13922         22 DDPRF-PDDVKQRAQAVLDGCRGQSVGSYT-DSPGIEIIRRHVAQYISRR-DG-QPAD-WQDVILSAGASDGIKSVLKL-   95 (509)
Q Consensus        22 ~~~~~-p~~v~~a~~~~l~~~~~~~~~~Y~-~~~g~~~lr~~va~~l~~~-~g-~~~~-~~~i~~t~G~~~al~~~~~~-   95 (509)
                      |.|.+ |+.+++++.+.+..   .  . |+ +..|.+++|+++++++..+ .+ +.+. +++|++|+|+++++..++++ 
T Consensus       111 g~~~~~~~~~v~a~~~~~~~---~--~-y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l  184 (533)
T 3f6t_A          111 TELGLNRDKVVAEWVNGAVA---N--N-YPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSL  184 (533)
T ss_dssp             HTTCCCHHHHHHHHHHHHHT---C--S-CCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCCCcCCcHHHHHHHHHHHh---C--C-CCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHh
Confidence            34444 45666666666554   1  2 54 7789999999999999766 23 4554 46999999999999999998 


Q ss_pred             ----hhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC--CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         96 ----LIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE--SKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        96 ----l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                          ++++||    +|+++.|+|.++...++..|++++.++.+.  +.+|.+|++.|++.++.     ++++|++++|||
T Consensus       185 ~~~~l~~~gd----~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-----~~k~v~l~~p~N  255 (533)
T 3f6t_A          185 AENHLLKKGD----KIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-----SIKALIVVNPTN  255 (533)
T ss_dssp             HHTTSSCTTC----EEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-----TEEEEEEESSCT
T ss_pred             hhhhccCCcC----EEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-----CCeEEEEeCCCC
Confidence                678888    999999999999999999999999999865  55789999999998876     799999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHH-HCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQVLTKENIQDIIKFAH-REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~-~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      |||.+++.+++++|+++|+ +||++||+||+|.++.++    ..++.....        .++++++||||.+ |++|+|+
T Consensus       256 PtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~----~~~~~~~~~--------~~~i~~~S~SK~~-g~~G~Ri  322 (533)
T 3f6t_A          256 PTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN----FKSIYSVVP--------YNTMLVYSYSKLF-GCTGWRL  322 (533)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT----CCCHHHHSG--------GGEEEEEESHHHH-TCGGGCE
T ss_pred             CCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC----ccCHhhcCC--------CCEEEEecCcccC-CCcccce
Confidence            9999999999999999999 689999999999998764    344444322        2489999999999 8999999


Q ss_pred             EEEeeecCCHHHHHHHHH-------------hhhcccCcchhhhhccccccCCCCCchhHHHHHHH--hhhcccCccccc
Q psy13922        249 GYSEVINLDPGVKAMLHK-------------SISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQA--VLDGCRGQSVGQ  313 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  313 (509)
                      ||++.  .++.+++.+..             +.+....+...            +|.+.++.....  ...........|
T Consensus       323 G~l~~--~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~------------~~i~rl~~~~~~~~~~~~~~~~~~~q  388 (533)
T 3f6t_A          323 GVIAL--NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKM------------KFIDRLCADSRSIGLYHTAGLSTPQQ  388 (533)
T ss_dssp             EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGC------------CHHHHHHHHHTTTTTGGGCSCCHHHH
T ss_pred             EEEEE--CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchh------------hhHHHHHHHHHHHHHhcccCCChHHH
Confidence            99983  33333333311             11001111110            000000000000  000000001133


Q ss_pred             ch-----hhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCH------HH
Q psy13922        314 TV-----MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA------KA  382 (509)
Q Consensus       314 ~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~------~~  382 (509)
                      .+     +..+.+.  -|+   +.+.++++++++.++++++.+.+.|. + ++.+..+++++|+|+++....      .+
T Consensus       389 ~a~a~~a~~~L~~~--~g~---~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~  461 (533)
T 3f6t_A          389 IMEALFSMTHLLTS--TNG---GSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEF  461 (533)
T ss_dssp             HHHHHHHHHHHTTC--BGG---GTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHhhh--ccc---cchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHH
Confidence            33     2222100  000   11234478899999999999999998 6 678888999999998774100      00


Q ss_pred             HHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccc
Q psy13922        383 IAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGI  462 (509)
Q Consensus       383 ~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (509)
                      ..... .+ .++.+++.++++++||++.||..|+.                                             
T Consensus       462 ~~~~~-~~-~~~~~~~~~ll~~~GV~v~pg~~f~~---------------------------------------------  494 (533)
T 3f6t_A          462 RDYLT-NN-FEQVDFLLKLAEKNGVVLVDGVGFGA---------------------------------------------  494 (533)
T ss_dssp             HHHHH-HH-CCHHHHHHHHHHHTTSSSCTTEEECS---------------------------------------------
T ss_pred             HHHhh-cc-CCHHHHHHHHHHhCCEEEeCCcccCC---------------------------------------------
Confidence            00000 01 13456678888899999999998876                                             


Q ss_pred             cccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        463 CIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       463 ~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                         + .+        ++|+|++ .+++++++++++|+++++++.++||
T Consensus       495 ---~-~~--------~iRls~a~~~~e~i~~~i~~L~~~l~~~~~~~~  530 (533)
T 3f6t_A          495 ---K-PG--------ELRVSQANLPTEDYALIGKQVLELLKEYYEEFK  530 (533)
T ss_dssp             ---S-TT--------EEEEESSSSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---C-CC--------EEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2 22        8999999 6999999999999999999999986

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=3e-38  Score=327.01  Aligned_cols=337  Identities=18%  Similarity=0.238  Sum_probs=253.0

Q ss_pred             CCHHHHHHHHHHHhcccC-CCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRG-QSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~-~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      .|+.+++++.++++.... .....|++..|..++|+++++++.  +|. +++++|++|+|+++++..++. +..+||   
T Consensus        47 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~~~gd---  119 (400)
T 3asa_A           47 LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FFGPNQ---  119 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HHCSSC---
T ss_pred             CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-HcCCCC---
Confidence            478899999988876321 124459888899999999999974  354 678899999999999998765 456777   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCE-EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNME-QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                       +|+++.|+|.++...++..|.+ ++.++.++++++..|++.+     .     ++++|++++||||||.++|.+++++|
T Consensus       120 -~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~-----~-----~~~~v~l~~p~nptG~~~~~~~l~~l  188 (400)
T 3asa_A          120 -TVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED-----T-----HIDILCLCSPNNPTGTVLNKDQLRAI  188 (400)
T ss_dssp             -EEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT-----C-----CCSEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             -EEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc-----c-----CccEEEEeCCCCCCCCcCCHHHHHHH
Confidence             9999999999999999999998 9999987655566664321     2     78999999999999999999999999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH---
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV---  260 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~---  260 (509)
                      +++|+++|+++|+||+|.++.+++. ...++..+...      ..++++++|+||.+ |++|+|+||++   .++++   
T Consensus       189 ~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~------~~~~i~~~s~sK~~-g~~GlriG~~~---~~~~~~~~  257 (400)
T 3asa_A          189 VHYAIEHEILILFDAAYSTFISDPS-LPKSIFEIPDA------RFCAIEINSFSKPL-GFAGIRLGWTV---IPQELTYA  257 (400)
T ss_dssp             HHHHHHTTCEEEEECTTGGGCCCTT-SCSSGGGSTTG------GGTEEEEEECCGGG-TTTTCCCEEEE---CCTTCBCT
T ss_pred             HHHHHHcCCEEEEEchhhhhhcCCC-CCCchhhCCCC------CCceEEEecchhhc-CCcchheeEEe---eChhhccc
Confidence            9999999999999999999877542 12233222100      12378899999999 79999999998   67666   


Q ss_pred             ----HHHHHHh-hh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        261 ----KAMLHKS-IS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       261 ----~~~l~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                          ++.+... .. .+.+++.+                                  .|.++..+++         + . 
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~---------~-~-  292 (400)
T 3asa_A          258 DGHFVIQDWERFLSTTFNGASIP----------------------------------AQEAGVAGLS---------I-L-  292 (400)
T ss_dssp             TSCBHHHHHHHHHHHHCCCCCHH----------------------------------HHHHHHHHHH---------H-T-
T ss_pred             hhhhHHHHHHHHhccCccCCChH----------------------------------HHHHHHHHhC---------c-H-
Confidence                5555332 22 33456666                                  4444444432         1 1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeec-CCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ-MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                       +++++++.++++++.+.+.|+++ |+++..+.+++|+|++ ++  .         +. ++..+...+++++||.+.||.
T Consensus       293 -~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~l~~~~gv~v~~g~  358 (400)
T 3asa_A          293 -PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQ--A---------NI-SDRDLFDFFLREYHIAITPGI  358 (400)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCC--T---------TC-CTTTHHHHHHHHHSEECEEGG
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccC--C---------CC-CHHHHHHHHHHhCCEEEeChh
Confidence             35677888899999999999988 8888888888999987 53  1         22 233445677778899999998


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAM  493 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~  493 (509)
                      .|+.                                                .+.+        ++||++..++++++++
T Consensus       359 ~f~~------------------------------------------------~~~~--------~iRis~~~~~e~i~~~  382 (400)
T 3asa_A          359 GFGR------------------------------------------------SGSG--------FVRFSSLGKREDILAA  382 (400)
T ss_dssp             GGCG------------------------------------------------GGTT--------CEEEECCSCHHHHHHH
T ss_pred             HhCC------------------------------------------------CCCC--------EEEEEeeCCHHHHHHH
Confidence            8765                                                2323        8999988999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy13922        494 LEKFREFHEEFLA  506 (509)
Q Consensus       494 ~~~l~~~~~~~~~  506 (509)
                      +++|+++++++..
T Consensus       383 l~~l~~~~~~~~~  395 (400)
T 3asa_A          383 CERLQMAPALQSH  395 (400)
T ss_dssp             HHHHHC-------
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999987654

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=6.4e-37  Score=311.05  Aligned_cols=326  Identities=18%  Similarity=0.283  Sum_probs=260.2

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+++++.+.+..     ...|+ ..+..++|++++++++      +++++|++|+|+++++..+++.+.++
T Consensus        24 ~~~~~~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~la~~~~------~~~~~i~~~~g~~~a~~~~~~~l~~~   91 (354)
T 3ly1_A           24 NENPLGMSPKAQAAARDAVVK-----ANRYA-KNEILMLGNKLAAHHQ------VEAPSILLTAGSSEGIRAAIEAYASL   91 (354)
T ss_dssp             CCCSSCCCHHHHHHHHHTGGG-----TTSCC-HHHHHHHHHHHHHHTT------SCGGGEEEESHHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHhh-----CcCCC-CCchHHHHHHHHHHhC------CChHHEEEeCChHHHHHHHHHHHhCC
Confidence            44544  68899999888875     34474 4678999999999983      56789999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.+++  +.+|++.|++.+++.   +++++|++++|+||||.+++.++
T Consensus        92 gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~l~~~---~~~~~v~l~~p~nptG~~~~~~~  162 (354)
T 3ly1_A           92 EA----QLVIPELTYGDGEHFAKIAGMKVTKVKMLDN--WAFDIEGLKAAVAAY---SGPSIVYLVNPNNPTGTITPADV  162 (354)
T ss_dssp             TC----EEEEESSSCTHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHHHTC---SSCEEEEEESSCTTTCCCCCHHH
T ss_pred             CC----eEEECCCCchHHHHHHHHcCCEEEEecCCCC--CCCCHHHHHHHhccC---CCCCEEEEeCCCCCcCCCcCHHH
Confidence            88    9999999999999999999999999998753  689999999999830   17999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.+|+++| ++|+++|+||+|.++.+++  ...+........     ..++++++|+||.+ |++|+|+||++   .+++
T Consensus       163 l~~l~~~~-~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~-----~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~  230 (354)
T 3ly1_A          163 IEPWIASK-PANTMFIVDEAYAEFVNDP--RFRSISPMITQG-----AENIILLKTFSKIH-AMAGMRVGYAV---AHPT  230 (354)
T ss_dssp             HHHHHHTC-CTTEEEEEECTTGGGCCCT--TCCCSHHHHHTT-----CSSEEEEEESSSTT-CCGGGCCEEEE---CCHH
T ss_pred             HHHHHHhC-CCCeEEEEeccHHHhcccc--ccCCHHHHhhhc-----CCCEEEEeeChhhc-cChhhhheeee---cCHH
Confidence            99999999 8999999999999988764  233444433321     13488899999999 79999999998   7999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+...... ++++.+                                  .+.++..+++.        .   +++++
T Consensus       231 ~~~~~~~~~~~-~~~~~~----------------------------------~~~a~~~~l~~--------~---~~~~~  264 (354)
T 3ly1_A          231 VIALMGRYVAG-EKINFS----------------------------------GVDAALASMND--------S---AFITY  264 (354)
T ss_dssp             HHHHHGGGTTC-SCCCHH----------------------------------HHHHHHHHTTC--------H---HHHHH
T ss_pred             HHHHHHHhcCC-CCCCHH----------------------------------HHHHHHHHhcC--------H---HHHHH
Confidence            99999876654 456666                                  55555555441        1   45788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.++++++.+.+.|+++ ++.+.++.+ .|+|++++.              +...+ ...|.++||.+. |.+++.  
T Consensus       265 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~-~~~~~~~~~--------------~~~~~-~~~l~~~gi~v~-g~~~~~--  324 (354)
T 3ly1_A          265 SKKSNDVSRQILLKALEDL-KLPYLPSEG-NFVFHQLVV--------------PLKDY-QTHMADAGVLIG-RAFPPA--  324 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCCBCCCCS-SEEEEECSS--------------CHHHH-HHHHHHTTEECC-CCCTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCeECCCCc-eEEEEECCC--------------CHHHH-HHHHHHCCEEEe-ecCCCC--
Confidence            8999999999999999988 888776554 557877651              23443 455567899988 664433  


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                                    ++          ++|++++ +++++++++++|++
T Consensus       325 ----------------------------------------------~~----------~iRis~~-~~~~i~~~~~~l~~  347 (354)
T 3ly1_A          325 ----------------------------------------------DN----------WCRISLG-TPQEMQWVADTMRE  347 (354)
T ss_dssp             ----------------------------------------------TT----------EEEEECC-CHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CC----------EEEEEcC-CHHHHHHHHHHHHH
Confidence                                                          33          9999987 78999999999998


Q ss_pred             HHHH
Q psy13922        500 FHEE  503 (509)
Q Consensus       500 ~~~~  503 (509)
                      ++++
T Consensus       348 ~l~~  351 (354)
T 3ly1_A          348 FRKK  351 (354)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8763

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=2.2e-37  Score=321.46  Aligned_cols=346  Identities=16%  Similarity=0.185  Sum_probs=251.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc--EEEeCCHHHHHHHHHHHhh--
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD--VILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~--   97 (509)
                      |.|+.++.|+++.+.++..   +....|.|..|+++||+++++++...   ....+.  .+.|.|+|.|+...+..+.  
T Consensus        59 g~~~vl~~Vk~A~~~~~~~---~~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~  132 (420)
T 4h51_A           59 GRPYPLRVVRKAEQLLLDM---NLDYEYLPISGYQPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRV  132 (420)
T ss_dssp             SCBCCCHHHHHHHHHHHHT---TCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHhcC---CCCCCCCCcCChHHHHHHHHHHhcCC---CccccccceeeecCchHHHHHHHHHHHHh
Confidence            4667778999998887766   44445999999999999999998533   333343  4558899988887777664  


Q ss_pred             --cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEE-EEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         98 --EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI-GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        98 --~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~-~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                        ++||    +|++++|+|.+|...++.+|.+.+ .++..+..++.+|.+.+.+.+....  ++++++++++||||||..
T Consensus       133 ~~~pgd----~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~vll~~~p~NPtG~~  206 (420)
T 4h51_A          133 FDAETT----PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP--DGSVFILHQCAHNPTGVD  206 (420)
T ss_dssp             SCTTTS----CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC--SSCEEEEESSSCTTTCCC
T ss_pred             cCCCCC----EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC--CCcEEEEeCCCCCCCCCC
Confidence              4666    999999999999999999999744 4555445567889999998887632  256677778999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      +++++|++|+++|+++++++|+|++|.+|.+++............+.     ..+++++.||||.| |++|+|+||++++
T Consensus       207 ~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~s~SK~~-~~~G~RvG~~~~~  280 (420)
T 4h51_A          207 PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR-----GIEVLLAQSFSKNM-GLYSERAGTLSLL  280 (420)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-----TCCCEEEEECTTTS-CCGGGCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh-----CceEEEEecccccc-ccccCceEEEEec
Confidence            99999999999999999999999999999886421111111122222     23489999999999 7999999999865


Q ss_pred             cCCHHHHHHH----HHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc
Q psy13922        255 NLDPGVKAML----HKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS  329 (509)
Q Consensus       255 ~~~~~~~~~l----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  329 (509)
                      ....+-...+    .... ..+.+++..                                  ++.+....+++    ...
T Consensus       281 ~~~~~~~~~~~~~l~~~~r~~~s~~p~~----------------------------------~a~~~~~~l~d----~~l  322 (420)
T 4h51_A          281 LKDKTKRADVKSVMDSLIREEYTCPPAH----------------------------------GARLAHLILSN----NEL  322 (420)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHHHHHS----HHH
T ss_pred             ccCHHHHHHHHHHHHHhhhcccCcchHH----------------------------------HHHHHHHHhcC----HHH
Confidence            5554433333    2222 256677777                                  34333333331    111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        330 YEQFSREKQSVLDSLKQRAKMVADTFNSI--EG-MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                      ...|.++++.+++.++++++.+.+.|+++  ++ +.++.+++|||.|..++                . +.+ ++|+++|
T Consensus       323 ~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls----------------~-e~v-~~L~e~~  384 (420)
T 4h51_A          323 RKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS----------------K-AQC-EYCQNHN  384 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC----------------H-HHH-HHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC----------------H-HHH-HHHHhCC
Confidence            35567778999999999999999999986  22 55567889999995442                1 223 5678899


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-c
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-P  485 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~  485 (509)
                      |+++|                                                       +           -|||++ .
T Consensus       385 Vy~~~-------------------------------------------------------~-----------gRis~Agl  398 (420)
T 4h51_A          385 IFITV-------------------------------------------------------S-----------GRANMAGL  398 (420)
T ss_dssp             EECCT-------------------------------------------------------T-----------CEEEGGGC
T ss_pred             EEEcC-------------------------------------------------------C-----------CEEEeccC
Confidence            98874                                                       2           289998 6


Q ss_pred             ChHHHHHHHHHHHHHHHHHHhh
Q psy13922        486 QPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      +++.|+.+.++|.+++++..+|
T Consensus       399 ~~~ni~~~a~aI~~vvr~i~re  420 (420)
T 4h51_A          399 THETALMLAQTINDAVRNVNRE  420 (420)
T ss_dssp             CHHHHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999887664

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=6e-37  Score=312.74  Aligned_cols=323  Identities=15%  Similarity=0.165  Sum_probs=259.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+++++.+.+..     ..+|++..+ .++|++++++++      +++++|++|+|+++++..++++++++
T Consensus        38 ~~~~~~~~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~la~~~~------~~~~~v~~~~g~~~a~~~~~~~l~~~  105 (365)
T 3get_A           38 NENPFGTPPKAIECLRQNANK-----AHLYPDDSM-IELKSTLAQKYK------VQNENIIIGAGSDQVIEFAIHSKLNS  105 (365)
T ss_dssp             CCCTTCSCHHHHHHHHHHGGG-----TTSCCCTTC-HHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHh-----hccCCCCCh-HHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHHHHhCC
Confidence            44554  68899999988874     345888777 899999999983      56789999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|++++.++. +..++ +|++.|++.++.     ++++|++++|+||||.+++.++
T Consensus       106 gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~  174 (365)
T 3get_A          106 KN----AFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKD-----EIKLIFLCLPNNPLGECLDASE  174 (365)
T ss_dssp             TC----EEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTT-----TEEEEEEESSCTTTCCCCCHHH
T ss_pred             CC----EEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCC-----CCCEEEEcCCCCCCCCCcCHHH
Confidence            98    9999999999999999999999999998 33457 899999999986     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccc--cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVY--AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +.+|+++| ++|+++|+||+|.++.+  .+. .+.+.......      ..++++++|+||.+ |++|+|+||++   .+
T Consensus       175 l~~l~~~~-~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~------~~~~i~~~s~sK~~-~~~G~r~G~~~---~~  242 (365)
T 3get_A          175 ATEFIKGV-NEDCLVVIDAAYNEFASFKDSK-KHLEPCELIKE------FDNVLYLGTFSKLY-GLGGLRIGYGI---AN  242 (365)
T ss_dssp             HHHHHHTS-CTTSEEEEECTTHHHHHHHCGG-GCCCHHHHHHH------CTTEEEEEESSSTT-SCTTTCCEEEE---EC
T ss_pred             HHHHHHhC-CCCcEEEEeCccHHHhcccCCc-ccccHhHHhcc------CCCEEEEeecchHh-cCcchheEEEE---cC
Confidence            99999998 57999999999999885  332 33444443222      23488899999999 79999999998   69


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +++++.+...... ++++.+                                  .+.++..+++           ..+++
T Consensus       243 ~~~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~~~l~-----------~~~~~  276 (365)
T 3get_A          243 ANIISAFYKLRAP-FNVSNL----------------------------------ALKAAVAAMD-----------DDEFT  276 (365)
T ss_dssp             HHHHHHHHHHSCT-TCSCHH----------------------------------HHHHHHHHHT-----------CHHHH
T ss_pred             HHHHHHHHHhcCC-CCcCHH----------------------------------HHHHHHHHhC-----------CHHHH
Confidence            9999999876654 346666                                  5555555544           11457


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|+++ ++++.++.+++ +|++++.            . +...+ ...|.++||.+.||..|+.
T Consensus       277 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~-~~~~~~~------------~-~~~~~-~~~l~~~gi~v~~g~~~~~  340 (365)
T 3get_A          277 EKTLENNFSQMELYKEFAKKH-NIKIIDSYTNF-ITYFFDE------------K-NSTDL-SEKLLKKGIIIRNLKSYGL  340 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSE-EEEECSS------------S-CHHHH-HHHHHTTTEECEECGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeE-EEEECCC------------C-CHHHH-HHHHHHCCEEEEECccCCC
Confidence            888999999999999999998 88887776655 7877651            1 34444 4555567999999876541


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                       +          ++|++++ ++++++++++.|
T Consensus       341 -------------------------------------------------~----------~iRis~~-~~~~i~~l~~~l  360 (365)
T 3get_A          341 -------------------------------------------------N----------AIRITIG-TSYENEKFFTEF  360 (365)
T ss_dssp             -------------------------------------------------S----------EEEEECC-CHHHHHHHHHHH
T ss_pred             -------------------------------------------------C----------EEEEEcC-CHHHHHHHHHHH
Confidence                                                             1          8999988 788999999988


Q ss_pred             HHHH
Q psy13922        498 REFH  501 (509)
Q Consensus       498 ~~~~  501 (509)
                      ++++
T Consensus       361 ~~~l  364 (365)
T 3get_A          361 DKIL  364 (365)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8775

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=6.6e-37  Score=312.19  Aligned_cols=321  Identities=19%  Similarity=0.239  Sum_probs=253.7

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+++++.+.+..     ...|+ ..+..++|++++++++      +++++|++|+|+++++..+++++.++
T Consensus        40 ~~~~~~~~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~la~~~~------~~~~~v~~~~g~t~a~~~~~~~~~~~  107 (363)
T 3ffh_A           40 NENPLGTSKKVAAIQANSSVE-----TEIYP-DGWASSLRKEVADFYQ------LEEEELIFTAGVDELIELLTRVLLDT  107 (363)
T ss_dssp             CSCTTCCCHHHHHHHHTCBSC-----CCBC-----CHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHCST
T ss_pred             CCCCCCCCHHHHHHHHHHHHH-----hhcCC-CcchHHHHHHHHHHhC------CChhhEEEeCCHHHHHHHHHHHHccC
Confidence            54554  67888888775543     44474 4577999999999993      56789999999999999999999998


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.++  ++.+|++.+++.+++     ++++|++++|+||||.+++.++
T Consensus       108 gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~-----~~~~v~~~~p~nptG~~~~~~~  176 (363)
T 3ffh_A          108 TT----NTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDE-----KTTIVWICNPNNPTGNYIELAD  176 (363)
T ss_dssp             TC----EEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHH
T ss_pred             CC----EEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhccc-----CCCEEEEeCCCCCcCCCcCHHH
Confidence            88    999999999999999999999999999885  368999999999976     7999999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.+|+++|++ |+++|+||+|.+|.+ +.  ..+.......      ..++++++|+||.+ |++|+|+||++   .+++
T Consensus       177 l~~l~~~~~~-~~~li~De~~~~~~~-~~--~~~~~~~~~~------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~  242 (363)
T 3ffh_A          177 IQAFLDRVPS-DVLVVLDEAYIEYVT-PQ--PEKHEKLVRT------YKNLIITRTFSKIY-GLASARVGYGI---ADKE  242 (363)
T ss_dssp             HHHHHTTSCT-TSEEEEECTTGGGCS-SC--CCCCGGGGGT------CTTEEEEEESSSTT-CCSSCCCEEEE---ECHH
T ss_pred             HHHHHHhCCC-CcEEEEeCchHhhcC-cc--ccCHHHHhhc------CCCEEEEeechhhh-cCchhceeeee---cCHH
Confidence            9999988887 999999999999887 32  2222222111      23489999999999 79999999998   6999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+..... .++++.+                                  .+.++..+++           ..+++++
T Consensus       243 ~~~~l~~~~~-~~~~~~~----------------------------------~~~~~~~~l~-----------~~~~~~~  276 (363)
T 3ffh_A          243 IIRQLNIVRP-PFNTTSI----------------------------------GQKLAIEAIK-----------DQAFIGE  276 (363)
T ss_dssp             HHHHHHHTCC-SCCCBHH----------------------------------HHHHHHHHHH-----------CHHHHHH
T ss_pred             HHHHHHHhCC-CCCCCHH----------------------------------HHHHHHHHhc-----------CHHHHHH
Confidence            9999987665 3455665                                  4444444433           1145788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .++.++++++.+.+.|++++++.+.++.+ .|+|++++.              +...+ ...|.++||.+.||..|+.  
T Consensus       277 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~~--------------~~~~~-~~~l~~~gi~v~~g~~~~~--  338 (363)
T 3ffh_A          277 CRTSNANGIKQYEAFAKRFEKVKLYPANG-NFVLIDLGI--------------EAGTI-FSYLEKNGYITRSGAALGF--  338 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEECCCCS-SEEEEECSS--------------CHHHH-HHHHHHTTEECEETTTTTC--
T ss_pred             HHHHHHHHHHHHHHHHhhCCCceECCCCC-eEEEEECCC--------------CHHHH-HHHHHHCCeEEEeCccCCC--
Confidence            89999999999999999966888876665 457876651              23443 4455567999999988765  


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~  499 (509)
                                                                    ++          ++|++++ ++++++++++.|++
T Consensus       339 ----------------------------------------------~~----------~iRis~~-~~~~i~~~~~~l~~  361 (363)
T 3ffh_A          339 ----------------------------------------------PT----------AVRITIG-KEEDNSAVIALLEK  361 (363)
T ss_dssp             ----------------------------------------------TT----------EEEEECC-CHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CC----------eEEEECC-CHHHHHHHHHHHHH
Confidence                                                          34          8999988 88999999998887


Q ss_pred             H
Q psy13922        500 F  500 (509)
Q Consensus       500 ~  500 (509)
                      +
T Consensus       362 ~  362 (363)
T 3ffh_A          362 L  362 (363)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=6.6e-37  Score=321.02  Aligned_cols=366  Identities=18%  Similarity=0.221  Sum_probs=265.9

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCC------------CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQ------------SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGI   89 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~------------~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al   89 (509)
                      +.|..++.+.+++.+++.+....            ....|++..|.+++|+++++++.+.+|+.+++++|++|+|+++++
T Consensus        40 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al  119 (444)
T 3if2_A           40 GNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAF  119 (444)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred             CCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHH
Confidence            67888877777766666543212            124599999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCC------C----eEEEc-CCCChhHHHH------HHhcCCEEEEEecCCC-C--CCCCCHHHHHHH
Q psy13922         90 KSVLKLLIEDVDGKK------P----GVLIP-IPQYPLYSAS------LAEFNMEQIGYYLDES-K--QWGLPISELERS  149 (509)
Q Consensus        90 ~~~~~~l~~~gd~~~------~----~Vlv~-~p~y~~~~~~------~~~~g~~~~~v~~~~~-~--~~~~d~~~L~~~  149 (509)
                      +.++++++++||..+      +    .|+++ .|+|..+...      +...|.+++.++.+++ +  +|.+|++.|+++
T Consensus       120 ~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~  199 (444)
T 3if2_A          120 FYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENL  199 (444)
T ss_dssp             HHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTC
T ss_pred             HHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHH
Confidence            999999988763000      1    47765 9999998763      4556888998887752 2  367999999988


Q ss_pred             HHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCce
Q psy13922        150 ITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME  229 (509)
Q Consensus       150 i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (509)
                      +....  +++++|++++||||||.+++.+++++|+++|++||++||+||+|+.+....  .+.+..   +.     ...+
T Consensus       200 l~~~~--~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~---~~-----~~~~  267 (444)
T 3if2_A          200 PALKE--GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI--IYSDAH---LN-----WDNN  267 (444)
T ss_dssp             HHHHT--TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC--BCSCCC---CC-----CCTT
T ss_pred             HHhcC--CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc--cccccc---cc-----CCCC
Confidence            43210  178999999999999999999999999999999999999999998643211  111100   00     0234


Q ss_pred             eEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccC
Q psy13922        230 LASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG  308 (509)
Q Consensus       230 vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (509)
                      +++++|+||.  +++|+|+||++   .++++++.+..... ...+++.+                               
T Consensus       268 ~i~~~S~sK~--~~~G~r~G~~~---~~~~l~~~~~~~~~~~~~~~~~~-------------------------------  311 (444)
T 3if2_A          268 TILCFSLSKI--GLPGMRTGIIV---ADAKVIEAVSAMNAVVNLAPTRF-------------------------------  311 (444)
T ss_dssp             EEEEEESTTT--TCGGGCCEEEE---CCHHHHHHHHHHHHHHHSSCCCH-------------------------------
T ss_pred             EEEEechhhc--cCCCCceEEEE---ECHHHHHHHHHHHHhccCCCChH-------------------------------
Confidence            8889999996  46999999998   79999999987665 33455555                               


Q ss_pred             cccccchhhcccCCCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCC--CeeccCCceeEEeecCCCCHHHHH
Q psy13922        309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQS-VLDSLKQRAKMVADTFNS-IEG--MSCNPVQGAMYAFPQMKLPAKAIA  384 (509)
Q Consensus       309 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~g--~~~~~~~~g~~~~~~~~~~~~~~~  384 (509)
                         .+.++..+++     +   ..+.++.++ +++.++++++.+.+.|.+ +++  +.+..+.+++++|++++..     
T Consensus       312 ---~~~a~~~~l~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-----  375 (444)
T 3if2_A          312 ---GAAIATPLVA-----N---DRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL-----  375 (444)
T ss_dssp             ---HHHHHHHHHH-----T---SHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC-----
T ss_pred             ---HHHHHHHHHH-----c---CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCC-----
Confidence               3444433333     1   122223444 677888888888888766 554  5667788999999877520     


Q ss_pred             HHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccc
Q psy13922        385 KAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICI  464 (509)
Q Consensus       385 ~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (509)
                           ++ +...+ ...|.++||.+.||..|....                                             
T Consensus       376 -----~~-~~~~l-~~~l~~~gi~v~~g~~~~~~~---------------------------------------------  403 (444)
T 3if2_A          376 -----PI-STLDL-YERLKAKGTLIVPSEYFFPGV---------------------------------------------  403 (444)
T ss_dssp             -----SS-CHHHH-HHHHHHTTEECEEGGGSCTTC---------------------------------------------
T ss_pred             -----CC-CHHHH-HHHHHHCCeEEecchhhcCCC---------------------------------------------
Confidence                 11 23443 455678899999999886510                                             


Q ss_pred             cCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHHHh
Q psy13922        465 VPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       465 ~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                       .+.  ++..+..++||+++.++++|++++++|+++++++.+
T Consensus       404 -~~~--~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~  442 (444)
T 3if2_A          404 -DVS--DYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYD  442 (444)
T ss_dssp             -CCT--TCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCc--ccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence             010  001122389999999999999999999999988765

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=6.7e-37  Score=321.93  Aligned_cols=339  Identities=13%  Similarity=0.173  Sum_probs=256.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC---CCCCcEEE--eCCHHHHHHH--HHHHhhcC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP---ADWQDVIL--SAGASDGIKS--VLKLLIED   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~---~~~~~i~~--t~G~~~al~~--~~~~l~~~   99 (509)
                      .+.+.+++.+..... ......|.+..|.+++|+++++++.   |..   +++++|++  |+|+++++++  .+..++.+
T Consensus        69 ~~av~~a~~~~~~~~-~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~  144 (448)
T 3meb_A           69 LPAVKEAEAIISSDL-SKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMP  144 (448)
T ss_dssp             CHHHHHHHHHHHHCT-TTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHhhcc-cCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCC
Confidence            345555555444211 1234459999999999999999983   433   22689999  9999999988  45567788


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEEecCCCC-CCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGYYLDESK-QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~-~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ||    +|+++.|+|.++...++    ..|++++.++..+.. +|.+|++.|++.+++..  .+++++++++||||||.+
T Consensus       145 gd----~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~--~~~~~v~~~~p~NPtG~~  218 (448)
T 3meb_A          145 KA----EFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP--EKSIFLFHACAHNPSGID  218 (448)
T ss_dssp             TC----CEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSC--TTCEEEEESSSCTTTCCC
T ss_pred             CC----EEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCC--CCcEEEEeCCCCCCCCcC
Confidence            88    99999999999999999    999999999984443 68999999999998521  146777889999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC-CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG-SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ++.+++++|+++|+++|+++|+||+|.+|.+++. ....++..+. +.     ..+++++.|+||.| |++|+|+||+.+
T Consensus       219 ~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~-----~~~~i~~~S~SK~~-g~~G~RiG~l~~  291 (448)
T 3meb_A          219 FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV-DA-----GVEVLVAQSFSKNF-GLYGERIGCLHV  291 (448)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH-HT-----TCCEEEEEECTTTS-CCGGGCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh-hc-----CCcEEEEecccccC-CCccccceeeee
Confidence            9999999999999999999999999999987531 0122333332 22     23489999999999 799999999832


Q ss_pred             ec--------CCH----HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhccc
Q psy13922        254 IN--------LDP----GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV  320 (509)
Q Consensus       254 ~~--------~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~  320 (509)
                      +.        .++    .+++.+..... .+.+++.+                                  ++.++..++
T Consensus       292 v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l  337 (448)
T 3meb_A          292 VHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIH----------------------------------GAYIVQVIV  337 (448)
T ss_dssp             ECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHHHH
T ss_pred             eeccccccccCCHHHHHHHHHHHHHHHhcccCCccHH----------------------------------HHHHHHHHh
Confidence            23        245    66776665433 45567777                                  454444444


Q ss_pred             CCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC------CeeccCCceeEEeecCCCCHHHHHHHhhcCC
Q psy13922        321 NPPQPGEPS-YEQFSREKQSVLDSLKQRAKMVADTFNSI--EG------MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGK  391 (509)
Q Consensus       321 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  391 (509)
                      +     ++. ...|.++++++++.++++++.+.+.|+++  ++      +.+..+++++|+|+.++              
T Consensus       338 ~-----~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------  398 (448)
T 3meb_A          338 H-----DKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT--------------  398 (448)
T ss_dssp             T-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC--------------
T ss_pred             c-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC--------------
Confidence            4     111 13455668899999999999999999987  56      66778899999996553              


Q ss_pred             CCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCC
Q psy13922        392 CPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFG  471 (509)
Q Consensus       392 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (509)
                         .+++..+++++||++.||+                                                          
T Consensus       399 ---~~~~~~ll~~~gV~v~~G~----------------------------------------------------------  417 (448)
T 3meb_A          399 ---PEHVDYLKEKWSIYLVKAG----------------------------------------------------------  417 (448)
T ss_dssp             ---HHHHHHHHHHHCEEECSGG----------------------------------------------------------
T ss_pred             ---HHHHHHHHHhCCEEEeCCC----------------------------------------------------------
Confidence               2346778889999998532                                                          


Q ss_pred             CCCCceeEEEEeec-ChHHHHHHHHHHHHHHHH
Q psy13922        472 QVPGTYHFRTTILP-QPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       472 ~~~~~~~~Rls~~~-~~~~i~~~~~~l~~~~~~  503 (509)
                             .|||++. ++++|++++++|++++++
T Consensus       418 -------gRis~a~~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          418 -------GRMSMCGLTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             -------GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             -------cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                   2888884 888899999999999873

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=2.6e-37  Score=320.73  Aligned_cols=362  Identities=16%  Similarity=0.206  Sum_probs=271.1

Q ss_pred             hHHHHHHHHhhc---CCCCC----CC-------CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhc
Q psy13922          5 FSLSLQVLALVS---LPQLF----DD-------PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD   70 (509)
Q Consensus         5 ~~~~~~~~~~~~---~~~~~----~~-------~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~   70 (509)
                      .+.++.+++.+.   .+..+    |.       +..|+.+.+++.+.+..  .....+|++..|..++|+++++++...+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~~y~~~~g~~~lr~~la~~~~~~~   91 (412)
T 1ajs_A           14 PVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN--SSLNHEYLPILGLAEFRTCASRLALGDD   91 (412)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC--TTCCCCCCCTTCCHHHHHHHHHHHHCTT
T ss_pred             CchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhC--hhhccCCCCCCCCHHHHHHHHHHHhcCC
Confidence            346677776653   22332    33       33468899999888743  1234559888999999999999997665


Q ss_pred             CCCCCCCcEEE--eCCHHHHHHHHHH--HhhcCC-----CCCCCeEEEcCCCChhHHHHHHhcCCE-EEEEecCCCCCCC
Q psy13922         71 GQPADWQDVIL--SAGASDGIKSVLK--LLIEDV-----DGKKPGVLIPIPQYPLYSASLAEFNME-QIGYYLDESKQWG  140 (509)
Q Consensus        71 g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~g-----d~~~~~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~  140 (509)
                      |+.+++++|++  |+|+++++..+++  .++.+|     |    +|+++.|+|.++...++..|.+ ++.++.+++.+|.
T Consensus        92 ~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (412)
T 1ajs_A           92 SPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDT----PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRG  167 (412)
T ss_dssp             CHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCS----CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTE
T ss_pred             CCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCC----eEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCc
Confidence            65567889999  9999999999965  445677     7    9999999999999999999999 9999986444678


Q ss_pred             CCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC-CccccHHHHHH
Q psy13922        141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG-SKFYSFKKVLV  219 (509)
Q Consensus       141 ~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~-~~~~~~~~~~~  219 (509)
                      +|++.|++.+++.  .++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..+.++.++..
T Consensus       168 ~d~~~l~~~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  245 (412)
T 1ajs_A          168 LDLQGFLSDLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS  245 (412)
T ss_dssp             ECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred             cCHHHHHHHHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc
Confidence            9999999999752  12467787899999999999999999999999999999999999999987530 02234444322


Q ss_pred             HhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH----HHHHHHHhh-hcccCcchhhhhccccccCCCCCchh
Q psy13922        220 EMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG----VKAMLHKSI-SAMLCPTVLALVSLPQLFDDPRFPDD  294 (509)
Q Consensus       220 ~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~----~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (509)
                      .      ..+++++.|+||.+ |++|+|+||+++...+++    +++.+.... ..+.+++.+                 
T Consensus       246 ~------~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  301 (412)
T 1ajs_A          246 E------GFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQ-----------------  301 (412)
T ss_dssp             T------TCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSH-----------------
T ss_pred             c------CCcEEEEEeccccc-CCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChH-----------------
Confidence            1      22489999999999 778999999982111777    455555433 234445666                 


Q ss_pred             HHHHHHHhhhcccCcccccchhhcccCCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCcee
Q psy13922        295 VKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS-YEQFSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAM  370 (509)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~  370 (509)
                                       ++.++..+++     +.. +..+.++++++++.++++++++.+.|++++   ++.+..+.+++
T Consensus       302 -----------------~~~a~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~  359 (412)
T 1ajs_A          302 -----------------GARIVARTLS-----DPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGM  359 (412)
T ss_dssp             -----------------HHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSS
T ss_pred             -----------------HHHHHHHHHc-----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCce
Confidence                             4444444433     100 112345688999999999999999999873   37777889999


Q ss_pred             EEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCch
Q psy13922        371 YAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSV  450 (509)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  450 (509)
                      |+|++++                 ..++..+++++||.+.|                                       
T Consensus       360 ~~~~~~~-----------------~~~~~~~l~~~gv~v~~---------------------------------------  383 (412)
T 1ajs_A          360 FSFTGLN-----------------PKQVEYLINQKHIYLLP---------------------------------------  383 (412)
T ss_dssp             EEECCCC-----------------HHHHHHHHHTTCEECCT---------------------------------------
T ss_pred             EEEeCCC-----------------HHHHHHHHHhCCEEecC---------------------------------------
Confidence            9996543                 22367788889999874                                       


Q ss_pred             hhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHH
Q psy13922        451 LYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~  503 (509)
                                                 .+|++++ .+++++++++++|++++++
T Consensus       384 ---------------------------~~Ris~~~~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          384 ---------------------------SGRINMCGLTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             ---------------------------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             ---------------------------CcEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence                                       3588888 5899999999999998864

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=6e-41  Score=346.16  Aligned_cols=347  Identities=18%  Similarity=0.250  Sum_probs=274.4

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+++++.+++..   . ...|++.  ..++|+++++++.+.+|+++++++|++|+|+++++..+++++.++
T Consensus        39 ~~~~~~~~~~v~~a~~~~~~~---~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~  112 (392)
T 3b1d_A           39 ADMDFEVMPEVKQAIHDYAEQ---L-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKE  112 (392)
Confidence            56655  56788888888765   2 3348765  689999999999988888888899999999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC-CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.++ +++|.+|++.|++.+++.    ++++|++++|+||||.+++.+
T Consensus       113 gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~  184 (392)
T 3b1d_A          113 GE----AVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN----DVKLYLLCNPHNPGGRVWERE  184 (392)
Confidence            88    999999999999999999999999999853 335779999999999742    688999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|+++|+||+|.++.+++. .+.++..+..+.     ..++++++|+||.+ |++|+|+||++.  .++
T Consensus       185 ~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~  255 (392)
T 3b1d_A          185 VLEQIGHLCQKHHVILVSDEIHQDLTLFGH-EHVSFNTVSPDF-----KDFALVLSSATKTF-NIAGTKNSYAII--ENP  255 (392)
Confidence            999999999999999999999999988642 333444432211     12488899999999 799999999972  345


Q ss_pred             HHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        259 GVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++.+......+  .+++.+                                  ++.++..+++.          ..++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~~----------~~~~  291 (392)
T 3b1d_A          256 TLCAQFKHQQLVNNHHEVSSL----------------------------------GYIATETAYRY----------GKPW  291 (392)
Confidence            6888887765533  245555                                  45544444431          1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      ++++++.++++++.+.+.|++ +|++.+.++.+++++|++++..          +. +...+...+++++||.+.||..|
T Consensus       292 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~----------~~-~~~~l~~~l~~~~gi~v~~g~~f  360 (392)
T 3b1d_A          292 LVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY----------GL-TDDALFTLLHDQAKVILNRGSDY  360 (392)
Confidence            778888999999999999988 7889888999999999766411          11 23344455556889999999988


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        ++|++++.++++|+++++
T Consensus       361 ~~------------------------------------------------~~~~--------~iRi~~~~~~e~i~~~l~  384 (392)
T 3b1d_A          361 GS------------------------------------------------EGEL--------HARLNIAAPKSLVEEICK  384 (392)
Confidence            64                                                2323        899999988999999999


Q ss_pred             HHHHHHH
Q psy13922        496 KFREFHE  502 (509)
Q Consensus       496 ~l~~~~~  502 (509)
                      +|+++++
T Consensus       385 ~l~~~l~  391 (392)
T 3b1d_A          385 RIVCCLP  391 (392)
Confidence            9998875

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=2.5e-37  Score=321.07  Aligned_cols=343  Identities=16%  Similarity=0.158  Sum_probs=259.6

Q ss_pred             CCCHHHHHHHHH-HHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE--eCCHHHHHHHHHH--HhhcC
Q psy13922         25 RFPDDVKQRAQA-VLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL--SAGASDGIKSVLK--LLIED   99 (509)
Q Consensus        25 ~~p~~v~~a~~~-~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~   99 (509)
                      ..|+.+.+++.+ .+..   ....+|++..|..++|+++++++...+|+.+++++|++  |+|+++++.++++  .+..+
T Consensus        47 ~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~  123 (412)
T 1yaa_A           47 WVLPSVKAAEKLIHNDS---SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFP  123 (412)
T ss_dssp             CCCHHHHHHHHHHHTCT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCT
T ss_pred             CCcHHHHHHHHhhhcCc---ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCC
Confidence            456889999988 7764   33445988899999999999999766666667899999  9999999999843  34467


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE-EeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV-IINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv-i~~p~NPtG~~~s~~  178 (509)
                      ||    +|+++.|+|.++...++..|++++.++..+..++.+|++.|++.+++.   ...++++ +++||||||.+++.+
T Consensus       124 gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~  196 (412)
T 1yaa_A          124 DK----LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSE  196 (412)
T ss_dssp             TC----CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHH
T ss_pred             CC----EEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHH
Confidence            87    999999999999999999999999999832225789999999999762   0134455 599999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCC-CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC-
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEG-SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL-  256 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~-  256 (509)
                      ++++|+++|+++|+++|+||+|.++.+++. ..+.++..+... ..  +..++++++|+||.+ |++|+|+||++++.+ 
T Consensus       197 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~  272 (412)
T 1yaa_A          197 QWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK-LS--TVSPVFVCQSFAKNA-GMYGERVGCFHLALTK  272 (412)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH-TT--TTCCEEEEEECTTTS-CCGGGCEEEEEEECCS
T ss_pred             HHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc-CC--CCcceEEEeccCCCC-CCcCCcceEEEEEecC
Confidence            999999999999999999999999887530 012334343221 11  000489999999999 777999999962231 


Q ss_pred             ---CHH----HHHHHHHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        257 ---DPG----VKAMLHKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       257 ---~~~----~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                         +++    +++.+.... ..+.+++.+                                  ++.++..+++     +.
T Consensus       273 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----~~  313 (412)
T 1yaa_A          273 QAQNKTIKPAVTSQLAKIIRSEVSNPPAY----------------------------------GAKIVAKLLE-----TP  313 (412)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHHHHH-----SH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccCCCChH----------------------------------HHHHHHHHhC-----CH
Confidence               555    788777643 345555666                                  4444444433     11


Q ss_pred             c-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        329 S-YEQFSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       329 ~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                      . .+.+.++++++++.++++++.+.+.|++++   ++++..+++++++|+.++                ... +..++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~~l~~  376 (412)
T 1yaa_A          314 ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----------------PQM-VKRLEET  376 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----------------HHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC----------------HHH-HHHHHHh
Confidence            0 112445688999999999999999999873   388888899999996443                222 5778888


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      +||.+.|                                                                  ++|||++
T Consensus       377 ~gi~v~~------------------------------------------------------------------~~Ris~~  390 (412)
T 1yaa_A          377 HAVYLVA------------------------------------------------------------------SGRASIA  390 (412)
T ss_dssp             HCEECCT------------------------------------------------------------------TSEEEGG
T ss_pred             CCEEecc------------------------------------------------------------------CcEEEEc
Confidence            9999874                                                                  4789988


Q ss_pred             -cChHHHHHHHHHHHHHHHH
Q psy13922        485 -PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       485 -~~~~~i~~~~~~l~~~~~~  503 (509)
                       .+++++++++++|+++++.
T Consensus       391 ~~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          391 GLNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             GCCTTTHHHHHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHHHh
Confidence             4899999999999998753

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=1.4e-37  Score=320.79  Aligned_cols=314  Identities=17%  Similarity=0.220  Sum_probs=237.6

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE--eCCHHHHHHHHHHHhh--cCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL--SAGASDGIKSVLKLLI--EDVD  101 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~--~~gd  101 (509)
                      .|+.+.+++.+.+..   ....+|++..|..++|+++++++....+..+++++|++  |+|++++++.+++.+.  .+||
T Consensus        45 ~~~~v~~a~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd  121 (396)
T 2q7w_A           45 VLTSVKKAEQYLLEN---ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK  121 (396)
T ss_dssp             CCHHHHHHHHHHHHH---CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCC
T ss_pred             CcHHHHHHHHhhcCc---ccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCC
Confidence            358899999888776   23445988899999999999999655443356789998  9999999999998774  5787


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          +|+++.|+|.++...++..|.+++.++.+++.++.+|++.|++.+++..  ++++++++++||||||.+++.++++
T Consensus       122 ----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~v~~~~p~nptG~~~~~~~l~  195 (396)
T 2q7w_A          122 ----RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ--AGDVVLFHGCCHNPTGIDPTLEQWQ  195 (396)
T ss_dssp             ----EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC--TTCEEEEECSSCTTTCCCCCHHHHH
T ss_pred             ----EEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHHH
Confidence                9999999999999999999999999998643457899999999987520  1367777899999999999999999


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH---
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP---  258 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~---  258 (509)
                      +|+++|+++|+++|+||+|.++.+++...+.++..+...      ..++++++|+||.+ |++|+|+||+++++.++   
T Consensus       196 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~  268 (396)
T 2q7w_A          196 TLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM------HKELIVASSYSXNF-GLYNERVGACTLVAADSETV  268 (396)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH------CSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHH
T ss_pred             HHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc------CCcEEEEEeccccc-cccccccceEEEEcCCHHHH
Confidence            999999999999999999999887531123344444322      12489999999999 79999999997111255   


Q ss_pred             -HHHHHHHHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC-chHHHHH
Q psy13922        259 -GVKAMLHKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP-SYEQFSR  335 (509)
Q Consensus       259 -~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~-~~~~~~~  335 (509)
                       ++++.+.... ..+.+++.+                                  ++.++..+++     +. ..+.+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----~~~l~~~~~~  309 (396)
T 2q7w_A          269 DRAFSQMKAAIRANYSNPPAH----------------------------------GASVVATILS-----NDALRAIWEQ  309 (396)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHHHHT-----SHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCCcH----------------------------------HHHHHHHHhc-----ChhhHHHHHH
Confidence             4555555433 234455666                                  4444444443     11 0113345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      +++++++.++++++.+.+.|+++.   ++++..+++++|+|++++                . .++..+++++||.+.|
T Consensus       310 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~l~~~gv~v~~  371 (396)
T 2q7w_A          310 ELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------K-EQVLRLREEFGVYAVA  371 (396)
T ss_dssp             HHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------H-HHHHHHHHHHCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----------------H-HHHHHHHHhcCeeecC
Confidence            688899999999999999999873   378788899999996553                1 2367788889999874

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=1.7e-36  Score=309.54  Aligned_cols=325  Identities=20%  Similarity=0.296  Sum_probs=260.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.+.+  |+.+++++.+.+.+   .....|+. .+..++|+++++++    |.. ++++|++|+|++++++.++++++++
T Consensus        38 ~~~~~~~~~~v~~a~~~~~~~---~~~~~y~~-~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~  108 (367)
T 3euc_A           38 MENPYRLPPALRSELAARLGE---VALNRYPV-PSSEALRAKLKEVM----QVP-AGMEVLLGNGSDEIISMLALAAARP  108 (367)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHH---HHTTCSCC-CCHHHHHHHHHHHH----TCC-TTCEEEEEEHHHHHHHHHHHHTCCT
T ss_pred             CCCCCCCCHHHHHHHHHHhhh---hhhhcCCC-CcHHHHHHHHHHHh----CCC-CcceEEEcCCHHHHHHHHHHHHcCC
Confidence            44554  78999999998885   23445866 47799999999998    322 6789999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|.+++.++.++  +|.+|++.|++.+++.    ++++|++++||||||.+++.++
T Consensus       109 gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~  178 (367)
T 3euc_A          109 GA----KVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEH----QPAIVYLAYPNNPTGNLFDAAD  178 (367)
T ss_dssp             TC----EEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHH----CCSEEEEESSCTTTCCCCCHHH
T ss_pred             CC----EEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhcc----CCCEEEEcCCCCCCCCCCCHHH
Confidence            88    999999999999999999999999999876  4689999999999875    7999999999999999999999


Q ss_pred             HHHHHHHHHHC--CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        180 IQDIIKFAHRE--KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       180 l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++|+++|++|  |+++|+||+|.+|...+   ..+..   ..      ..++++++|+||.  |++|+|+||++   .+
T Consensus       179 l~~i~~~~~~~~~~~~li~De~~~~~~~~~---~~~~~---~~------~~~~i~~~s~sK~--~~~G~r~G~~~---~~  241 (367)
T 3euc_A          179 MEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WMSRL---TD------FGNLLVMRTVSKL--GLAGIRLGYVA---GD  241 (367)
T ss_dssp             HHHHHHHTBTTSCBCEEEEECTTCCSSSCC---SGGGG---GT------CTTEEEEEECCCT--TSCSCCEEEEE---EC
T ss_pred             HHHHHHhhhhcCCCcEEEEeCcchhhcccc---hHHHH---hh------CCCEEEEecchhh--cccccCceeee---eC
Confidence            99999999999  99999999999976432   21111   11      2348889999999  37999999998   68


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +++++.+...... ++.+.+                                  .+.++..+++         .  .+++
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~----------------------------------~~~a~~~~l~---------~--~~~~  275 (367)
T 3euc_A          242 PQWLEQLDKVRPP-YNVNVL----------------------------------TEATALFALE---------H--VAVL  275 (367)
T ss_dssp             HHHHHHHGGGCCS-SCCCHH----------------------------------HHHHHHHHHT---------T--HHHH
T ss_pred             HHHHHHHHHhCCC-CCCCHH----------------------------------HHHHHHHHhc---------C--HHHH
Confidence            9999988766543 345555                                  5555555544         1  3447


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|+++|++.+.++ ++.|+|++++               +... +...|.++||.++||..|+.
T Consensus       276 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~---------------~~~~-l~~~l~~~gi~v~~~~~~~~  338 (367)
T 3euc_A          276 DEQAAQLRAERSRVAEGMAAHGGVTVFPS-AANFLLARVP---------------DAAQ-TFDRLLARKVLIKNVSKMHP  338 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEECCC-SSSEEEEECS---------------CHHH-HHHHHHTTTEECEECGGGCG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEECCC-CCeEEEEECC---------------CHHH-HHHHHHHCCeEEEECCccCC
Confidence            88889999999999999999989986544 5567776664               1333 34556788999999887754


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      .+.+        ++|++++ ++++++++++.|
T Consensus       339 ------------------------------------------------~~~~--------~iRis~~-~~~~i~~~~~~l  361 (367)
T 3euc_A          339 ------------------------------------------------LLAN--------CLRVTVS-TPEENAQFLEAF  361 (367)
T ss_dssp             ------------------------------------------------GGTT--------EEEEECC-CHHHHHHHHHHH
T ss_pred             ------------------------------------------------CCCC--------EEEEecC-CHHHHHHHHHHH
Confidence                                                            2333        9999988 889999999999


Q ss_pred             HHHHH
Q psy13922        498 REFHE  502 (509)
Q Consensus       498 ~~~~~  502 (509)
                      +++++
T Consensus       362 ~~~l~  366 (367)
T 3euc_A          362 AASLQ  366 (367)
T ss_dssp             HHHTC
T ss_pred             HHHhc
Confidence            88763

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=2.8e-37  Score=320.54  Aligned_cols=316  Identities=16%  Similarity=0.155  Sum_probs=234.5

Q ss_pred             CCC-CC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEE--EeCCHHHHHHHHHH--
Q psy13922         22 DDP-RF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI--LSAGASDGIKSVLK--   94 (509)
Q Consensus        22 ~~~-~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~--~t~G~~~al~~~~~--   94 (509)
                      |.| ++  |+.+.+++.++..    .....|++..|.+++|+++++++....+..+++++|.  .|.|+++++..+..  
T Consensus        49 g~~~d~~~~~~v~~a~~~a~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~  124 (409)
T 4eu1_A           49 GVYRDDADQPFVLECVKQATL----GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLL  124 (409)
T ss_dssp             SSCCCTTSCCCCCHHHHTCCC----CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHG
T ss_pred             eEEECCCCCEeecHHHHhcCc----cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHH
Confidence            555 44  5667777766622    3445599999999999999999853322222367884  59999999987654  


Q ss_pred             -HhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         95 -LLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        95 -~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                       .++++||    .|+++.|+|.++...++..|++++.++.+++.+|.+|++.|++.+++..  .+++++++++||||||.
T Consensus       125 ~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~i~~~~p~NPtG~  198 (409)
T 4eu1_A          125 NRFVANCN----RIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP--EGSVILVHACAHNPTGV  198 (409)
T ss_dssp             GGTSSSCC----EEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC--TTCEEEEESSSCTTTCC
T ss_pred             HHhcCCCC----EEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC--CCcEEEEECCCCCCCCC
Confidence             4456777    9999999999999999999999999998655568999999999997421  14566667999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCC-ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS-KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +++.+++++|+++|+++|+++|+||+|.++.+++.. ...++..+.. .     ..++++++||||.+ |++|+|+||++
T Consensus       199 ~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~-----~~~~i~~~S~SK~~-g~~G~riG~~~  271 (409)
T 4eu1_A          199 DPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD-M-----VPNLIVAQSFSKNF-GLYGHRCGALH  271 (409)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT-T-----SSCCEEEEECTTTS-SCGGGCCEEEE
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh-h-----CCcEEEEecCcccc-cCccCCceEEE
Confidence            999999999999999999999999999999876410 1233333321 1     23489999999999 79999999972


Q ss_pred             eecCCHH----HHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        253 VINLDPG----VKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       253 ~~~~~~~----~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                      ++.++++    +++.+..... .+.+++.+                                  ++.++..+++     +
T Consensus       272 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~-----~  312 (409)
T 4eu1_A          272 ISTASAEEAKRLVSQLALLIRPMYNNPPLY----------------------------------GAWVVSSILK-----D  312 (409)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHHSSCCHH----------------------------------HHHHHHHHHH-----C
T ss_pred             EEeCCHHHHHHHHHHHHHHHhhhcCCCChH----------------------------------HHHHHHHHhC-----C
Confidence            1227888    6666665543 45556666                                  4444444333     1


Q ss_pred             Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHH
Q psy13922        328 PS-YEQFSREKQSVLDSLKQRAKMVADTFNSIEG----MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELL  402 (509)
Q Consensus       328 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll  402 (509)
                      +. .++|.++++++++.++++++.+.+.|+++ |    +.+..+++++|+|++++                 .+++..++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll  374 (409)
T 4eu1_A          313 PQLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIERQVGMMAYTGLT-----------------REQVELLR  374 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHSCSSEEECCCC-----------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcceecCCceEEEEeCCC-----------------HHHHHHHH
Confidence            10 13345668899999999999999999987 4    77778999999995442                 23367888


Q ss_pred             hhcCeEEec
Q psy13922        403 ERTGICIVP  411 (509)
Q Consensus       403 ~~~gI~v~p  411 (509)
                      +++||.+.|
T Consensus       375 ~~~gv~v~p  383 (409)
T 4eu1_A          375 SEYHIYMTL  383 (409)
T ss_dssp             HHHCEECCT
T ss_pred             HcCCEEEcC
Confidence            889999885

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=3.9e-36  Score=306.47  Aligned_cols=278  Identities=20%  Similarity=0.295  Sum_probs=219.3

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC-CCCCCeEEEcCCCChhHHHHHHh
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV-DGKKPGVLIPIPQYPLYSASLAE  123 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g-d~~~~~Vlv~~p~y~~~~~~~~~  123 (509)
                      ..++|++.. ..++|+++++++    |  +++++|++|+|+++++..++++++++| |    +|+++.|+|.++...++.
T Consensus        51 ~~~~Y~~~~-~~~lr~~la~~~----~--~~~~~v~~~~G~~~ai~~~~~~~~~~g~d----~Vl~~~p~~~~~~~~~~~  119 (356)
T 1fg7_A           51 TLNRYPECQ-PKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRAFCEPGKD----AILYCPPTYGMYSVSAET  119 (356)
T ss_dssp             CTTSCCCSS-CHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTTC----EEEECSSSCTHHHHHHHH
T ss_pred             hhccCCCcc-HHHHHHHHHHHh----C--CChHHEEEcCCHHHHHHHHHHHHhCCCCC----EEEEeCCChHHHHHHHHH
Confidence            355698764 799999999999    3  567899999999999999999999888 7    999999999999999999


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      .|.+++.++.++  +|.+|++.+++.++      ++++|++++||||||.+++.+++++|+++|+ +|+++|+||+|.++
T Consensus       120 ~g~~~~~v~~~~--~~~~d~~~l~~~i~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~  190 (356)
T 1fg7_A          120 IGVECRTVPTLD--NWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEF  190 (356)
T ss_dssp             HTCEEEECCCCT--TSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGG
T ss_pred             cCCEEEEeeCCC--CCCCCHHHHHHHhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhh
Confidence            999999998874  46899999988774      4899999999999999999999999999999 99999999999987


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccc
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLP  283 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  283 (509)
                      ...     .++.++...      ..++++++|+||.+ |++|+|+||++   .++++++.+......+ +++.+      
T Consensus       191 ~~~-----~~~~~~~~~------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~~~-~~~~~------  248 (356)
T 1fg7_A          191 CPQ-----ASLAGWLAE------YPHLAILRTLSKAF-ALAGLRCGFTL---ANEEVINLLMKVIAPY-PLSTP------  248 (356)
T ss_dssp             SGG-----GCSGGGTTT------CTTEEEEEESSSTT-CCGGGCCEEEE---ECHHHHHHHHHHSCSS-CSCHH------
T ss_pred             cCC-----CcHHHHHhh------CCCEEEEecchHhh-cCchhhhEEEE---eCHHHHHHHHHhcCCC-CCCHH------
Confidence            621     121111111      23488899999999 79999999998   6899999998766544 56666      


Q ss_pred             cccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee
Q psy13922        284 QLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC  363 (509)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  363 (509)
                                                  ++.++..+++         +...+++++.++.++++++.+.+.|++++++..
T Consensus       249 ----------------------------~~~a~~~~l~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  291 (356)
T 1fg7_A          249 ----------------------------VADIAAQALS---------PQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ  291 (356)
T ss_dssp             ----------------------------HHHHHHHHTS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             ----------------------------HHHHHHHHhc---------CccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence                                        4554444444         111124788889999999999999999865433


Q ss_pred             ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec-CCCCCC
Q psy13922        364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP-GAGFGQ  417 (509)
Q Consensus       364 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p-g~~f~~  417 (509)
                      ..+.+++|+|+++.               +..++. +.|.++||.++| |..|+.
T Consensus       292 ~~~~~~~~~~~~~~---------------~~~~l~-~~L~~~gI~v~~~g~~~~~  330 (356)
T 1fg7_A          292 VFDSETNYILARFK---------------ASSAVF-KSLWDQGIILRDQNKQPSL  330 (356)
T ss_dssp             ECCCSSSEEEEEET---------------THHHHH-HHHHHTTEECEECTTSTTC
T ss_pred             ECCCCCeEEEEECC---------------CHHHHH-HHHHHCCEEEEECCCCCCC
Confidence            34556778887664               133433 445788999999 776654

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=2.5e-35  Score=299.89  Aligned_cols=291  Identities=18%  Similarity=0.258  Sum_probs=231.4

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..     ...|+ ..+..++|++++++++      +++++|++|+|+++++..+++.+    |    
T Consensus        40 ~~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~la~~~~------~~~~~i~~~~g~t~al~~~~~~~----d----   99 (361)
T 3ftb_A           40 IPKSFLNNIDEGIKN-----LGVYP-DVNYRRLNKSIENYLK------LKDIGIVLGNGASEIIELSISLF----E----   99 (361)
T ss_dssp             SCHHHHTTHHHHHHG-----GGSCC-CTTCHHHHHHHHHHHT------CCSCEEEEESSHHHHHHHHHTTC----S----
T ss_pred             CCHHHHHHHHHHHHH-----hcCCC-CccHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHHHHc----C----
Confidence            378999999998876     24474 4677999999999993      57889999999999999999888    6    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      +|+++.|+|.++...++..|.+++.++.++++  .++++.+++.+++      +++|++++|+||||.+++.+++++|++
T Consensus       100 ~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~l~~~l~~------~~~v~i~~p~nptG~~~~~~~l~~i~~  171 (361)
T 3ftb_A          100 KILIIVPSYAEYEINAKKHGVSVVFSYLDENM--CIDYEDIISKIDD------VDSVIIGNPNNPNGGLINKEKFIHVLK  171 (361)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHTTT------CSEEEEETTBTTTTBCCCHHHHHHHHH
T ss_pred             cEEEecCChHHHHHHHHHcCCeEEEeecCccc--CCCHHHHHHhccC------CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999988664  5577888887763      889999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|+++|+||+|.++.++ .  ..+.......      ..++++++|+||.+ |++|+|+||+++  .++++++.+.
T Consensus       172 ~~~~~~~~li~De~~~~~~~~-~--~~~~~~~~~~------~~~~i~~~s~sK~~-~~~G~r~g~~~~--~~~~~~~~~~  239 (361)
T 3ftb_A          172 LAEEKKKTIIIDEAFIEFTGD-P--SSSFVGEIKN------YSCLFIIRAMTKFF-AMPGIRFGYGIT--NNKEIAAKIK  239 (361)
T ss_dssp             HHHHHTCEEEEECSSGGGTCC-T--TSSSGGGTTT------CSSEEEEEESSSTT-SCGGGCCEEEEE--SCHHHHHHHH
T ss_pred             HhhhcCCEEEEECcchhhcCC-c--ccchhHhccc------CCCEEEEeeChhhc-CCCCcceeEEEe--CCHHHHHHHH
Confidence            999999999999999998875 1  1122211111      23488899999999 799999999864  7999999998


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      ..... ++++.+                                  ++.++..+++         +  .+++++.++.++
T Consensus       240 ~~~~~-~~~~~~----------------------------------~~~~~~~~l~---------~--~~~~~~~~~~~~  273 (361)
T 3ftb_A          240 AKQNP-WNINCF----------------------------------AEMAAINCLK---------D--TNYIEESLLWIK  273 (361)
T ss_dssp             TTSCT-TCSCHH----------------------------------HHHHHHHTSS---------C--HHHHHHHHHHHH
T ss_pred             hhCCC-CCCCHH----------------------------------HHHHHHHHhc---------C--HHHHHHHHHHHH
Confidence            76553 355666                                  5555555554         1  244788899999


Q ss_pred             HHHHHHHHHHhcCCCCe-eccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        346 QRAKMVADTFNSIEGMS-CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.+.+.|+++|++. +.++.+++ +|+++.            + .+...+...+ .++||.+.||..|+.
T Consensus       274 ~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~------------~-~~~~~l~~~l-~~~gi~v~~g~~~~~  331 (361)
T 3ftb_A          274 KERKRFIEELNKIGFIKRVFSPHANF-VLCRLE------------N-ISGEKLYDSL-LKEDIVIRRCCNFIG  331 (361)
T ss_dssp             HHHHHHHHHHHHSSSEEEEECCSSSE-EEEEES------------S-SCHHHHHHHH-HTTTEECEECTTSTT
T ss_pred             HHHHHHHHHHHhCCCCceecCCCCeE-EEEEcC------------C-CCHHHHHHHH-HHCCeEEeeCccCCC
Confidence            99999999999998888 66776654 565554            1 1344444444 455999999998876

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=1.3e-35  Score=302.95  Aligned_cols=323  Identities=19%  Similarity=0.241  Sum_probs=245.1

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..     ..+|++ .|..++|+++++++.      +++++|++|+|+++++..+++++  ++|    
T Consensus        38 ~~~~v~~a~~~~~~~-----~~~y~~-~~~~~l~~~la~~~~------~~~~~v~~~~g~~~al~~~~~~~--~gd----   99 (364)
T 1lc5_A           38 MPVSVKRALIDNLDC-----IERYPD-ADYFHLHQALARHHQ------VPASWILAGNGETESIFTVASGL--KPR----   99 (364)
T ss_dssp             CCHHHHHHHHHTGGG-----GGSCCC-TTCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHH--CCS----
T ss_pred             CCHHHHHHHHHHHHH-----hhcCCC-CCHHHHHHHHHHHHC------cCHHHEEECCCHHHHHHHHHHHc--CCC----
Confidence            478899998888765     345865 478999999999992      56789999999999999999999  557    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|.++...++..|.+++.++.+++.+|.+ ++.+.+.+..     ++++|++++|+||||.++|.+++++|++
T Consensus       100 ~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~  173 (364)
T 1lc5_A          100 RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTP-----DLDCLFLCTPNNPTGLLPERPLLQAIAD  173 (364)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             eEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccC-----CCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999876444544 4555554433     6899999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++|+++|+||+|.++.+++. ....   ....      ..++++++|+||.+ |++|+|+||+++  .++++++.+.
T Consensus       174 ~~~~~~~~li~De~~~~~~~~~~-~~~~---~~~~------~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~l~  240 (364)
T 1lc5_A          174 RCKSLNINLILDEAFIDFIPHET-GFIP---ALKD------NPHIWVLRSLTKFY-AIPGLRLGYLVN--SDDAAMARMR  240 (364)
T ss_dssp             HHHHHTCEEEEECTTGGGSTTCC-CSGG---GCTT------CTTEEEEEESTTTT-TCTTTCCEEEEC--CCHHHHHHHH
T ss_pred             HhhhcCcEEEEECcChhhccCcc-chhh---Hhcc------CCCEEEEEECchhh-cCCccceEEEEE--CCHHHHHHHH
Confidence            99999999999999999876421 1111   1111      22478899999999 799999999973  6899999888


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      .... .++++.+                                  .+.++..+++         .  .+++++.++.++
T Consensus       241 ~~~~-~~~~~~~----------------------------------~~~~~~~~l~---------~--~~~~~~~~~~~~  274 (364)
T 1lc5_A          241 RQQM-PWSVNAL----------------------------------AALAGEVALQ---------D--SAWQQATWHWLR  274 (364)
T ss_dssp             HHSC-TTCSCHH----------------------------------HHHHHHHGGG---------C--HHHHHHHHHHHH
T ss_pred             HhCC-CCCCCHH----------------------------------HHHHHHHHHh---------C--cHHHHHHHHHHH
Confidence            7654 3345555                                  4555555544         1  235788899999


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccc
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR  425 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r  425 (509)
                      ++++.+.+.|+++|++.+.++.+ .|+|++++  .            +...+. ..|.++||.+.||..|+.        
T Consensus       275 ~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~--~------------~~~~l~-~~l~~~gi~v~~g~~~~~--------  330 (364)
T 1lc5_A          275 EEGARFYQALCQLPLLTVYPGRA-NYLLLRCE--R------------EDIDLQ-RRLLTQRILIRSCANYPG--------  330 (364)
T ss_dssp             HHHHHHHHHHHTSTTEEECCCSS-SEEEEEES--C------------TTCCHH-HHHHTTTEECEECTTSTT--------
T ss_pred             HHHHHHHHHHhcCCCCEECCCCC-eEEEEECC--C------------cHHHHH-HHHHHCCcEEeeCcccCC--------
Confidence            99999999999988888776655 45676554  1            122233 444567999999988764        


Q ss_pred             cchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHH
Q psy13922        426 QQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~  504 (509)
                                                              .+.+        ++|++++ ++++++++++.|++++++.
T Consensus       331 ----------------------------------------~~~~--------~iRis~~-~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          331 ----------------------------------------LDSR--------YYRVAIR-SAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             ----------------------------------------CCTT--------EEEEECC-CHHHHHHHHHHHHHHC---
T ss_pred             ----------------------------------------CCCC--------EEEEEeC-CHHHHHHHHHHHHHHhhcc
Confidence                                                    2223        8999987 4677777788777776554

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=2.7e-36  Score=311.11  Aligned_cols=310  Identities=15%  Similarity=0.183  Sum_probs=232.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE--eCCHHHHHHHHHHHhhc--CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL--SAGASDGIKSVLKLLIE--DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~~--~gd~  102 (509)
                      |+.+.+++.+.+..   ....+|++..|..++|+++++++...   .+++++|++  |+|++++++.+++.+..  +|| 
T Consensus        46 ~~~v~~a~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd-  118 (394)
T 2ay1_A           46 MRAVHAAEQRMLET---ETTKTYAGLSGEPEFQKAMGELILGD---GLKSETTATLATVGGTGALRQALELARMANPDL-  118 (394)
T ss_dssp             CHHHHHHHHHHHHH---CCCCCCCCSSCCHHHHHHHHHHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTC-
T ss_pred             cHHHHHHHHHhcCC---cccCCCCCCCCcHHHHHHHHHHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCC-
Confidence            68899999888776   23455988889999999999998432   236789999  99999999999988865  787 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                         +|+++.|+|.++...++..|.+++.++.+++.++.+|++.+++.+++.  ..+++++++++||||||.++|.+++++
T Consensus       119 ---~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~~~~~~~~nptG~~~~~~~l~~  193 (394)
T 2ay1_A          119 ---RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA--KKGDMVLLHGCCHNPTGANLTLDQWAE  193 (394)
T ss_dssp             ---CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC--CTTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred             ---EEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence               999999999999999999999999999864445789999999999752  013566777999999999999999999


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |+++|+++|+++|+||+|.++.+++.....++..+.. .     ..++++++|+||.+ |++|+|+||+++++.++++++
T Consensus       194 i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~-----~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~  266 (394)
T 2ay1_A          194 IASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS-R-----IPEVLIAASCSKNF-GIYRERTGCLLALCADAATRE  266 (394)
T ss_dssp             HHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH-H-----CSSEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHH
T ss_pred             HHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh-c-----CCCEEEEEeccCCC-cCcCCccceEEEEeCCHHHHH
Confidence            9999999999999999999988752111223333322 1     12489999999999 799999999972112666554


Q ss_pred             HH----HHhh-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc-hHHHHHH
Q psy13922        263 ML----HKSI-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS-YEQFSRE  336 (509)
Q Consensus       263 ~l----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~~~~~~~  336 (509)
                      .+    .... ..+.+++.+                                  ++.++..+++     +.. .+.+.++
T Consensus       267 ~l~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----~~~l~~~~~~~  307 (394)
T 2ay1_A          267 LAQGAMAFLNRQTYSFPPFH----------------------------------GAKIVSTVLT-----TPELRADWMAE  307 (394)
T ss_dssp             HHHHHHHHHHHTTTSSCCCH----------------------------------HHHHHHHHHH-----SHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCCChH----------------------------------HHHHHHHHhc-----ChHHHHHHHHH
Confidence            43    3222 234444555                                  4444433332     000 0123456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ++++++.++++++.+.+.|+++.   ++++..+.+++|+|++++                .+ .+..+++++||.+.|
T Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~-~~~~~l~~~gi~v~~  368 (394)
T 2ay1_A          308 LEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------------PE-QVKRIKEEFGIYMVG  368 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------------HH-HHHHHHHHHCEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----------------HH-HHHHHHHhCCEEecC
Confidence            88899999999999999998863   477778888999996553                12 257788889999874

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=3.3e-37  Score=318.65  Aligned_cols=305  Identities=14%  Similarity=0.188  Sum_probs=230.8

Q ss_pred             CcccCCCCcch-----HHHHHHHHHHHhhhcCCCCCC-CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH
Q psy13922         45 SVGSYTDSPGI-----EIIRRHVAQYISRRDGQPADW-QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS  118 (509)
Q Consensus        45 ~~~~Y~~~~g~-----~~lr~~va~~l~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~  118 (509)
                      ...+|++..|.     ++||+++|++++ .+|+.+++ ++|++|+|+++++..++++++++||+++++|+++.|+|.+|.
T Consensus        55 ~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~  133 (391)
T 3bwn_A           55 LMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV  133 (391)
T ss_dssp             TCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHH
T ss_pred             hhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHH
Confidence            34569999998     999999999998 56888877 599999999999999999999887533348999999999999


Q ss_pred             HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc
Q psy13922        119 ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE  198 (509)
Q Consensus       119 ~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~De  198 (509)
                      ..++..|++++.++.+.+   .++        ..     ++++|++++||||||.+++     +|++.+++++++||+||
T Consensus       134 ~~~~~~g~~~~~~~~d~~---~l~--------~~-----~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De  192 (391)
T 3bwn_A          134 EETTYVRSGMYKWEGDAW---GFD--------KK-----GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDF  192 (391)
T ss_dssp             HHHHTTCBTTEEEEEEST---TCC--------CC-----SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEEC
T ss_pred             HHHHHcCCeEEEecCCHH---HcC--------CC-----CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeC
Confidence            999999999999988754   222        12     6899999999999999996     34442222339999999


Q ss_pred             cCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        199 VYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       199 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      +|.+    +.  ..++..         ...++|+++||||.| |++|+|+||+++  .++++++.+..... ...+++.+
T Consensus       193 ~y~~----~~--~~~l~~---------~~~~~i~~~S~SK~~-g~~GlRiG~~~~--~~~~l~~~l~~~~~~~~~~~~~~  254 (391)
T 3bwn_A          193 AYYW----PH--YTPITR---------RQDHDIMLFTFSKIT-GHAGSRIGWALV--KDKEVAKKMVEYIIVNSIGVSKE  254 (391)
T ss_dssp             TTCS----TT--TSCCCC---------CBCCSEEEEEHHHHH-SCGGGCEEEEEE--CCHHHHHHHHHHHHHHHSSCCHH
T ss_pred             CCCC----CC--CCcccc---------CCCCeEEEEechhhc-CCCccceEEEEe--cCHHHHHHHHHHhcccccCCCHH
Confidence            9974    11  112111         123589999999999 799999999972  48999999988765 34566777


Q ss_pred             hhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH-------HHHHHHHHHHHHHHHHHH
Q psy13922        278 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ-------FSREKQSVLDSLKQRAKM  350 (509)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  350 (509)
                                                        .|.++..+++.     +  ..       +.++++++++.++++++.
T Consensus       255 ----------------------------------~q~a~~~~l~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
T 3bwn_A          255 ----------------------------------SQVRTAKILNV-----L--KETCKSESESENFFKYGREMMKNRWEK  293 (391)
T ss_dssp             ----------------------------------HHHHHHHHHHH-----H--HHHTTCCCTTTSHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHHHHHHHhC-----c--chhccccccHHHHHHHHHHHHHHHHHH
Confidence                                              44444433320     0  00       133588899999999999


Q ss_pred             HHHHHhcCCCCeeccC-------------CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        351 VADTFNSIEGMSCNPV-------------QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       351 l~~~L~~~~g~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +.+.|+++|++.+..+             .+|+|+|++++.               .+ ++..+++++||.++||..|+.
T Consensus       294 l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~---------------~~-~~~~~l~~~gV~v~pg~~fg~  357 (391)
T 3bwn_A          294 LREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE---------------ET-DLVSELRRHKVMSRAGERCGS  357 (391)
T ss_dssp             HHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS---------------SC-CHHHHHHHTTEECEEGGGGTC
T ss_pred             HHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc---------------HH-HHHHHHHHCCEEEccCCCCCC
Confidence            9999999877766543             455689977751               11 256788899999999998754


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                       +.+        ++|||++.+++++++++++|
T Consensus       358 -------------------------------------------------~~~--------~iRis~~~~~e~i~~~~~~L  380 (391)
T 3bwn_A          358 -------------------------------------------------DKK--------HVRVSMLSREDVFNVFLERL  380 (391)
T ss_dssp             -------------------------------------------------CTT--------EEEEESCSCHHHHHHHHHHH
T ss_pred             -------------------------------------------------CCC--------EEEEEecCCHHHHHHHHHHH
Confidence                                                             112        99999999999999999999


Q ss_pred             HHHHHH
Q psy13922        498 REFHEE  503 (509)
Q Consensus       498 ~~~~~~  503 (509)
                      ++++++
T Consensus       381 ~~~~~~  386 (391)
T 3bwn_A          381 ANMKLI  386 (391)
T ss_dssp             HSCC--
T ss_pred             HHHHHh
Confidence            988764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=2.4e-34  Score=294.37  Aligned_cols=322  Identities=19%  Similarity=0.248  Sum_probs=248.8

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+.+++.+.+.... ....+|++..+ .++|+++++++.+++|.++++++|++|+|+++++..++++++++||    
T Consensus        44 ~~~~v~~a~~~~~~~~~-~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd----  117 (369)
T 3cq5_A           44 PSEALVADLVATVDKIA-TELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGR----  117 (369)
T ss_dssp             CCHHHHHHHHHHHHHHG-GGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTC----
T ss_pred             CCHHHHHHHHHHHHhcc-cccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCC----
Confidence            36889999998887632 12445877767 7999999999998888888889999999999999999999998888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|.++...++..|.+++.++.++  +|.+|++.|++.+++.    ++++|++++|+||||.+++.+++.+|++
T Consensus       118 ~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~~~~l~~l~~  191 (369)
T 3cq5_A          118 TALGFQPSYSMHPILAKGTHTEFIAVSRGA--DFRIDMDVALEEIRAK----QPDIVFVTTPNNPTGDVTSLDDVERIIN  191 (369)
T ss_dssp             EEEEEESSCTHHHHHHHHTTCEEEEEECCT--TSSCCHHHHHHHHHHH----CCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEcCCChHHHHHHHHHcCCEEEEecCCc--CCCCCHHHHHHHhhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999653  4689999999999864    6899999999999999999666666555


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCc-eeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM-ELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                         .+++++|+||+|.++.++     .+...+...      .. +++++.|+||.+ |++|+|+||++   .++++++.+
T Consensus       192 ---~~~~~li~De~~~~~~~~-----~~~~~~~~~------~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l  253 (369)
T 3cq5_A          192 ---VAPGIVIVDEAYAEFSPS-----PSATTLLEK------YPTKLVVSRTMSKAF-DFAGGRLGYFV---ANPAFIDAV  253 (369)
T ss_dssp             ---HCSSEEEEECTTGGGCCS-----CCGGGGTTT------CTTTEEEEEESSSTT-SCGGGCCEEEE---ECTHHHHHH
T ss_pred             ---hCCCEEEEECCchhhcCC-----cchHHHHhh------CCCCEEEEEechHhc-CCcccceEEEE---eCHHHHHHH
Confidence               556999999999998753     121111111      12 478899999999 78999999998   578888888


Q ss_pred             HHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHH
Q psy13922        265 HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL  344 (509)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (509)
                      ......+ +++.+                                  .+.++..+++           ..+++++.++.+
T Consensus       254 ~~~~~~~-~~~~~----------------------------------~~~a~~~~l~-----------~~~~~~~~~~~~  287 (369)
T 3cq5_A          254 MLVRLPY-HLSAL----------------------------------SQAAAIVALR-----------HSADTLGTVEKL  287 (369)
T ss_dssp             HTTSCTT-CSCHH----------------------------------HHHHHHHHHH-----------THHHHHTHHHHH
T ss_pred             HHcCCCC-CCCHH----------------------------------HHHHHHHHhc-----------CHHHHHHHHHHH
Confidence            7655433 45555                                  4444444432           123477888899


Q ss_pred             HHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCcccc
Q psy13922        345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF  424 (509)
Q Consensus       345 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~  424 (509)
                      +++++.+.+.|++. |+.+.++.+ .|+|++++.              +...+ .+.|.++||.+.||   +.       
T Consensus       288 ~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~~~~--------------~~~~l-~~~l~~~gi~v~~~---~~-------  340 (369)
T 3cq5_A          288 SVERVRVAARLEEL-GYAVVPSES-NFVFFGDFS--------------DQHAA-WQAFLDRGVLIRDV---GI-------  340 (369)
T ss_dssp             HHHHHHHHHHHHHH-TCEEECCSS-SEEEEECCS--------------SHHHH-HHHHHHTTEECBCC---SC-------
T ss_pred             HHHHHHHHHHHHhC-CCEECCCCC-eEEEEECCC--------------CHHHH-HHHHHHCCEEEEEC---CC-------
Confidence            99999999999885 888775554 566765531              23343 44556889999987   11       


Q ss_pred             ccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       425 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                                                               ++          ++|++++ +++++++++++|+++++
T Consensus       341 -----------------------------------------~~----------~iRis~~-~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          341 -----------------------------------------AG----------HLRTTIG-VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             -----------------------------------------TT----------EEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred             -----------------------------------------CC----------eEEEEeC-CHHHHHHHHHHHHHHHh
Confidence                                                     22          8999998 78999999999988764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=2.5e-34  Score=289.71  Aligned_cols=280  Identities=19%  Similarity=0.266  Sum_probs=214.8

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+.+++.+.+..     ..+|+ ..|..++|++++++++      +++++|++|+|+++++..++..+  +||    
T Consensus        30 ~~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~la~~~~------~~~~~i~~t~G~~~~l~~~~~~~--~gd----   91 (337)
T 3p1t_A           30 VEPRVQAAIAAAAAR-----INRYP-FDAEPRVMRKLAEHFS------CPEDNLMLVRGIDECFDRISAEF--SSM----   91 (337)
T ss_dssp             CCHHHHHHHHHHGGG-----TTSCC-TTHHHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHS--TTS----
T ss_pred             CCHHHHHHHHHhhhh-----hccCC-CCchHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHHHHhc--CCC----
Confidence            478899999888765     44585 5688999999999983      56789999999999999999998  787    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      +|+++.|+|.++...++..|++++.++.++  +|.+|++.|++.  .     +++++++++||||||.+++.+++.+   
T Consensus        92 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~-----~~~~v~i~~p~nptG~~~~~~~l~~---  159 (337)
T 3p1t_A           92 RFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--S-----RDDCVVLANPSNPTGQALSAGELDQ---  159 (337)
T ss_dssp             EEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--C-----TTEEEEEESSCTTTCCCCCHHHHHH---
T ss_pred             eEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--c-----CCCEEEEeCCCCCCCCCCCHHHHHH---
Confidence            999999999999999999999999999875  368899998765  2     6899999999999999999665555   


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++++ +|+||+|.+|...+. ...       ..     ..++++++|+||.+ |++|+|+||++   .++++++.+.
T Consensus       160 l~~~~~~-~ivDea~~~~~~~~~-~~~-------~~-----~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~l~  221 (337)
T 3p1t_A          160 LRQRAGK-LLIDETYVDYSSFRA-RGL-------AY-----GENELVFRSFSKSY-GLAGLRLGALF---GPSELIAAMK  221 (337)
T ss_dssp             HHHHCSE-EEEECTTGGGSSCSS-SCC-------CC-----BTTEEEEEESSSTT-CCTTTCCEEEE---CCHHHHHHHH
T ss_pred             HHHhCCc-EEEECCChhhccccc-ccc-------cc-----CCCEEEEeeCchhc-cCcchheEEEE---eCHHHHHHHH
Confidence            5667786 566999998765421 110       00     23478899999999 79999999998   7999999887


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      +... ..+++.+                                  .+.++..+++.        .   ++.++.++.+.
T Consensus       222 ~~~~-~~~~~~~----------------------------------~~~a~~~~l~~--------~---~~~~~~~~~~~  255 (337)
T 3p1t_A          222 RKQW-FCNVGTL----------------------------------DLHALEAALDN--------D---RAREAHIAKTL  255 (337)
T ss_dssp             TTSC-TTCSCHH----------------------------------HHHHHHHHHTC--------H---HHHHHHHHHHH
T ss_pred             hhcC-CCCCCHH----------------------------------HHHHHHHHhCC--------H---HHHHHHHHHHH
Confidence            7543 3445555                                  45554444441        1   12345555667


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.+.+.|+++ |+.+.++.+++++| ...               +... +...|.++||.+.||..|+.
T Consensus       256 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~-~~~---------------~~~~-~~~~l~~~gi~v~~g~~~~~  309 (337)
T 3p1t_A          256 AQRRRVADALRGL-GYRVASSEANFVLV-ENA---------------AGER-TLRFLRERGIQVKDAGQFGL  309 (337)
T ss_dssp             HHHHHHHHHHHHT-TCCBCCCSSSEEEE-ECT---------------TTHH-HHHHHHHTTEECEEGGGGTC
T ss_pred             HHHHHHHHHHHHC-cCEECCCCCeEEEE-EcC---------------CHHH-HHHHHHHCCeEEEECccCCC
Confidence            7788899999988 88888888776655 232               1222 45677888999999988765

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.1e-34  Score=292.37  Aligned_cols=287  Identities=17%  Similarity=0.240  Sum_probs=214.8

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+++++.+.+..     ...|++..+ .++|++++++++      +++++|++|+|+++++..+++++.  
T Consensus        23 ~~~~~~~~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~t~g~~~al~~~~~~l~--   88 (350)
T 3fkd_A           23 TVWTDGDKDHLEKHLVENLNC-----IRHYPEPDA-GTLRQMLAKRNS------VDNNAILVTNGPTAAFYQIAQAFR--   88 (350)
T ss_dssp             CSCCCSCCHHHHHHHHHTGGG-----GGSCCCTTC-HHHHHHHHHHTT------CCGGGEEEESHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCCHHHHHHHHHhHhH-----HhcCCCCcH-HHHHHHHHHHhC------cCHHHEEEcCCHHHHHHHHHHHHC--
Confidence            44444  67899998887733     445888777 899999999983      678899999999999999999998  


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEec-CCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL-DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      ||    +|+++.|+|.++...++..|++++.++. ++..++  ++        .     ++++|++++|+||||.+++.+
T Consensus        89 gd----~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~--------~-----~~~~v~i~~p~nptG~~~~~~  149 (350)
T 3fkd_A           89 GS----RSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEA--DF--------S-----NMDFCWLCNPNNPDGRLLQRT  149 (350)
T ss_dssp             TC----EEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGS--CC--------T-----TCSEEEEESSCTTTCCCCCHH
T ss_pred             CC----EEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccC--cc--------C-----CCCEEEEeCCCCCcCCCCCHH
Confidence            77    9999999999999999999999999998 654433  32        3     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++.+|+++|+++  +||+||+|.++.+++.  ... ..    ..   ...++++++|+||.+ |++|+|+||++   .++
T Consensus       150 ~l~~l~~~~~~~--~li~Dea~~~~~~~~~--~~~-~~----~~---~~~~~i~~~S~sK~~-~~~G~r~G~~~---~~~  213 (350)
T 3fkd_A          150 EILRLLNDHPDT--TFVLDQSYVSFTTEEV--IRP-AD----IK---GRKNLVMVYSFSHAY-GIPGLRIGYIV---ANK  213 (350)
T ss_dssp             HHHHHHHHCTTS--EEEEECTTTTSCSSCC--CCG-GG----GT---TCSSEEEEEESHHHH-SCGGGCCEEEE---CCH
T ss_pred             HHHHHHHhCCCC--EEEEECchhhhccCcc--hhh-HH----hh---cCCCEEEEecCchhc-cCcchheEeEE---eCH
Confidence            999998888765  9999999999887642  111 11    11   123489999999999 79999999998   799


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      ++++.+...... ++++.+                                  .+.++..+++..       +.+   .+
T Consensus       214 ~~~~~~~~~~~~-~~~~~~----------------------------------~~~~~~~~l~~~-------~~~---~~  248 (350)
T 3fkd_A          214 DFMKRVAAFSTP-WAVNAL----------------------------------AIEAAKFILIHP-------AQF---TL  248 (350)
T ss_dssp             HHHHHHHTTCCT-TCSCHH----------------------------------HHHHHHHHHHCT-------TTT---CC
T ss_pred             HHHHHHHHhCCC-CCCCHH----------------------------------HHHHHHHHHhCH-------HHH---HH
Confidence            999999876653 345555                                  333333332210       011   12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.. ++++.+.+.|+++|++.+.++.++ |+|++++.           +  +..++...+++++||.++||..|+.
T Consensus       249 ~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~-----------~--~~~~l~~~L~~~~gi~v~~g~~f~~  312 (350)
T 3fkd_A          249 PIRKWQ-RNTVDFITALNRLDGVEVHPSGTT-FFLLRLKK-----------G--TAAELKKYMLEEYNMLIRDASNFRG  312 (350)
T ss_dssp             CHHHHH-HHHHHHHHHHHHSTTEEECCCSSS-EEEEEESS-----------S--CHHHHHHHHHHTTCEECEECTTSTT
T ss_pred             HHHHHH-HHHHHHHHHHhcCCCcEECCCCCc-EEEEECCC-----------C--CHHHHHHHHHHHCCEEEEeCccCCC
Confidence            222233 778888889988888888766655 45655541           1  3455555666559999999998876

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=5.8e-36  Score=312.82  Aligned_cols=326  Identities=14%  Similarity=0.128  Sum_probs=244.2

Q ss_pred             CCCCCC--HHHHHHHHHHHhcccCCCcccCCCCc-c---hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         22 DDPRFP--DDVKQRAQAVLDGCRGQSVGSYTDSP-G---IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~~p--~~v~~a~~~~l~~~~~~~~~~Y~~~~-g---~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      +.|+++  +.+.+++.+++..... ....|++.. |   .++||++++++++.+.+..+++++|++|+|+++++.+++.+
T Consensus        64 g~~~~~~~~~v~~a~~~~l~~~~~-~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~  142 (427)
T 2hox_A           64 GDGLFLEEYWKQHKEASAVLVSPW-HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVIS  142 (427)
T ss_dssp             CCCGGGHHHHTTSHHHHCEEECTT-TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHhHHhhhhcCCc-ccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHH
Confidence            667764  4677777776643221 222398888 8   89999999999998766668899999999999999999999


Q ss_pred             h--------hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922         96 L--------IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus        96 l--------~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      +        +++||    .|+++.|+|..+...++..|.+++.+        .+|++.|++.+++     ++++|++++|
T Consensus       143 l~~~~~~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~~-----~~k~v~l~~p  205 (427)
T 2hox_A          143 LSPNMTATPDAPES----KVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSNP-----EQYIEMVTSP  205 (427)
T ss_dssp             HSCCTTTCTTSCCE----EEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSCG-----GGEEEEEESS
T ss_pred             HhhccccccCCCCC----EEEEeCCCcccHHHHHHHcCCeeeee--------cCCHHHHHHhhcC-----CceEEEEcCC
Confidence            9        88888    99999999999999999999987743        4567778777765     6899999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      |||||.+++ +.+       +  ++..|+|+.|.+    +   +.++.++.        ..++|+++||||.+ |++|+|
T Consensus       206 ~NPtG~~~~-~~l-------~--~~~~i~d~~~~~----~---~~s~~~~~--------~~~~i~~~S~SK~~-g~~G~R  259 (427)
T 2hox_A          206 NNPEGLLRH-AVI-------K--GCKSIYDMVYYW----P---HYTPIKYK--------ADEDILLFTMSKFT-GHSGSR  259 (427)
T ss_dssp             CTTTCCCCC-CSS-------T--TCEEEEECTTCS----T---TTSCCCSC--------BCCSEEEEEHHHHT-SCGGGC
T ss_pred             CCCcccccH-HHH-------c--CCCEEEeecccC----C---CCCccccC--------CCceEEEEeChhcC-CCCCce
Confidence            999999999 522       2  567788887753    1   12221111        22489999999999 799999


Q ss_pred             eEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      +||++.  .++++++.+.+... ...+++.+                                  .|.++..+++..   
T Consensus       260 iG~~~~--~~~~l~~~l~~~~~~~~~~~~~~----------------------------------~q~a~~~~L~~~---  300 (427)
T 2hox_A          260 FGWALI--KDESVYNNLLNYMTKNTEGTPRE----------------------------------TQLRSLKVLKEV---  300 (427)
T ss_dssp             CEEEEE--CCHHHHHHHHHHHHHHTSSCCHH----------------------------------HHHHHHHHHHHH---
T ss_pred             EEEEEE--CCHHHHHHHHHHHHhcCCCCCHH----------------------------------HHHHHHHHhhcc---
Confidence            999982  36999999988776 34566666                                  333333332200   


Q ss_pred             CCchH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee--------------ccCCceeEEeecCCCCHHHHHHHh
Q psy13922        327 EPSYE-----QFSREKQSVLDSLKQRAKMVADTFNSIEGMSC--------------NPVQGAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       327 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~  387 (509)
                       ..|-     .+.+++++.++.++++++.+.+.|++++|+.+              ..|++++|+|++++.         
T Consensus       301 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---------  370 (427)
T 2hox_A          301 -VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---------  370 (427)
T ss_dssp             -HHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---------
T ss_pred             -hhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC---------
Confidence             0000     01234678889999999999999998866554              346679999987751         


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCC
Q psy13922        388 AEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPG  467 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (509)
                           ++.+++..+++++||.++||..|+..                                               ++
T Consensus       371 -----~~~~~~~~ll~~~gI~v~pg~~f~~~-----------------------------------------------~~  398 (427)
T 2hox_A          371 -----EEDKDCYQTFQNGRINTQNGVGFEAS-----------------------------------------------SR  398 (427)
T ss_dssp             -----GGGCSHHHHHHHTTEECEEGGGGTSC-----------------------------------------------TT
T ss_pred             -----cHHHHHHHHHHHCCEEEcCCCccCCC-----------------------------------------------CC
Confidence                 12334667788899999999877541                                               23


Q ss_pred             CCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        468 AGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       468 ~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                                +||+|++.++++|++++++|+++++
T Consensus       399 ----------~~Ris~~~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          399 ----------YVRLSLIKTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             ----------EEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             ----------EEEEEecCCHHHHHHHHHHHHHHHh
Confidence                      9999999999999999999999874

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=8.8e-33  Score=281.61  Aligned_cols=289  Identities=15%  Similarity=0.205  Sum_probs=218.6

Q ss_pred             CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +.|.+  |+.+++++.+.+.... .....|+.. +..++|++++++++      +++++|++|+|+++++..++++++++
T Consensus        34 ~~~~~~~~~~v~~a~~~~~~~~~-~~~~~y~~~-~~~~lr~~la~~~g------~~~~~i~~t~g~~~al~~~~~~l~~~  105 (360)
T 3hdo_A           34 NENPYPPSPEVVKAILEELGPDG-AALRIYPSA-SSQKLREVAGELYG------FDPSWIIMANGSDEVLNNLIRAFAAE  105 (360)
T ss_dssp             CCCSSCCCHHHHHHHHHHHTTTC-GGGGSCCCS-SCHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHCCT
T ss_pred             CCCCCCCCHHHHHHHHHHHhccc-chhhcCCCC-chHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHHHHhCC
Confidence            55555  6799999999887721 124458655 45899999999993      67889999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    +|+++.|+|.++...++..|++++.++.+++  +.+  +.+++   ..    +++++++++|+||||.+++.+ 
T Consensus       106 gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~--~~~--~~l~~---~~----~~~~v~i~~p~nptG~~~~~~-  169 (360)
T 3hdo_A          106 GE----EIGYVHPSYSYYGTLAEVQGARVRTFGLTGD--FRI--AGFPE---RY----EGKVFFLTTPNAPLGPSFPLE-  169 (360)
T ss_dssp             TC----EEEEESSSCTHHHHHHHHHTCEEEEECBCTT--SSB--TTCCS---SB----CSSEEEEESSCTTTCCCCCHH-
T ss_pred             CC----EEEEcCCChHHHHHHHHHCCCEEEEeeCCCC--CCH--HHHHh---hc----CCCEEEEeCCCCCCCCCcCHH-
Confidence            98    9999999999999999999999999998654  333  33322   11    567889999999999999955 


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                        +|.++|+++|+++|+||+|.+|..  . ...++.   ..      ..++++++|+||.+ |++|+|+||++   .+++
T Consensus       170 --~l~~l~~~~~~~li~De~~~~~~~--~-~~~~~~---~~------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~  231 (360)
T 3hdo_A          170 --YIDELARRCAGMLVLDETYAEFAE--S-NALELV---RR------HENVVVTRTLSKSY-SLAGMRIGLAI---ARPE  231 (360)
T ss_dssp             --HHHHHHHHBSSEEEEECTTGGGSS--C-CCTHHH---HH------CSSEEEEEESTTTT-SCTTSCCEEEE---CCHH
T ss_pred             --HHHHHHHHCCCEEEEECChHhhCC--c-chhHHh---cc------CCCEEEEecchHhh-cCCccceeeEe---eCHH
Confidence              556667789999999999998732  1 222222   11      23488899999999 79999999998   7999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++.+...... ++.+.+                                  ++.++..+++           ..+++++
T Consensus       232 ~~~~~~~~~~~-~~~~~~----------------------------------~~~a~~~~l~-----------~~~~~~~  265 (360)
T 3hdo_A          232 VIAALDKIRDH-YNLDRL----------------------------------AQAACVAALR-----------DQAYLSE  265 (360)
T ss_dssp             HHHHHHHHSCS-CCSCHH----------------------------------HHHHHHHHHH-----------CHHHHHH
T ss_pred             HHHHHHHhCCC-CCCCHH----------------------------------HHHHHHHHhc-----------CHHHHHH
Confidence            99999876653 345555                                  4555444433           1234788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG  414 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  414 (509)
                      .++.++++++.+.+.|+++ ++.+.++.++ |+|+.+.            +. +... +...|.++||.++||..
T Consensus       266 ~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~-~~~~~~~------------~~-~~~~-l~~~l~~~gi~v~~~~~  324 (360)
T 3hdo_A          266 CCRRIRETREWFTTELRSI-GYDVIPSQGN-YLFATPP------------DR-DGKR-VYDGLYARKVLVRHFSD  324 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECT------------TC-CHHH-HHHHHHHTTEECBCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCEEcCCCcc-EEEEECC------------CC-CHHH-HHHHHHHCCEEEEECCC
Confidence            8899999999999999998 8887766554 5565553            11 2344 34566778999998764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=100.00  E-value=5.2e-33  Score=280.59  Aligned_cols=277  Identities=18%  Similarity=0.283  Sum_probs=212.8

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..   .....|+.. +..++|+++++++++.   .+++++|++|+|+++++..+++++   ||    
T Consensus        33 ~~~~v~~a~~~~~~~---~~~~~y~~~-~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~~---gd----   98 (335)
T 1uu1_A           33 FPEDLVDEVFRRLNS---DALRIYYDS-PDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLMF---DR----   98 (335)
T ss_dssp             CCHHHHHHHHHTCCG---GGGGSCCCS-SCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHHS---SE----
T ss_pred             CCHHHHHHHHHHhhh---hhhhcCCCC-chHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHHh---CC----
Confidence            478999999888754   234458654 6899999999999643   356789999999999999999998   67    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      +|+++ |+|.++...++..|.+++.++.++  +|.+|++.|     +     ++++|++++||||||.+++.+++.+|++
T Consensus        99 ~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l-----~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~  165 (335)
T 1uu1_A           99 SVFFP-PTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVNV-----G-----EGDVVFIPNPNNPTGHVFEREEIERILK  165 (335)
T ss_dssp             EEECS-SSCHHHHHHHHHHTCEEEECCCCT--TSCCCCCCC-----C-----TTEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             cEEEC-CCcHHHHHHHHHcCCeEEEeccCC--CCCCCHHHc-----C-----CCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            99999 999999999999999999998864  367888877     3     6899999999999999999998888888


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|   | ++|+||+|.++...   ...+.   ...      ..++++++|+||.+ |++|+|+||++   .++++++.+.
T Consensus       166 ~~---~-~li~De~~~~~~~~---~~~~~---~~~------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~  225 (335)
T 1uu1_A          166 TG---A-FVALDEAYYEFHGE---SYVDF---LKK------YENLAVIRTFSKAF-SLAAQRVGYVV---ASEKFIDAYN  225 (335)
T ss_dssp             TT---C-EEEEECTTHHHHCC---CCGGG---GGT------CSSEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHH
T ss_pred             hC---C-EEEEECcchhhcch---hHHHH---hhh------CCCEEEEecchhhc-CCcccCeEEEE---eCHHHHHHHH
Confidence            77   7 89999999987532   11111   111      23488899999999 79999999998   6899999988


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      ..... ++++.+                                  .+.++..+++          . .+++++.++.++
T Consensus       226 ~~~~~-~~~~~~----------------------------------~~~~~~~~l~----------~-~~~~~~~~~~~~  259 (335)
T 1uu1_A          226 RVRLP-FNVSYV----------------------------------SQMFAKVALD----------H-REIFEERTKFIV  259 (335)
T ss_dssp             HHSCT-TCSCHH----------------------------------HHHHHHHHHH----------T-HHHHHHHHHHHH
T ss_pred             HhcCC-CCcCHH----------------------------------HHHHHHHHhC----------C-HHHHHHHHHHHH
Confidence            76543 355665                                  4555554443          1 234777888899


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ++++.+.+.|+++ |+.+.++ ++.|+|++++. .            +...+. ..|.++||.+.|
T Consensus       260 ~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~-~------------~~~~~~-~~l~~~gi~v~~  309 (335)
T 1uu1_A          260 EERERMKSALREM-GYRITDS-RGNFVFVFMEK-E------------EKERLL-EHLRTKNVAVRS  309 (335)
T ss_dssp             HHHHHHHHHHHHH-TCCBCCC-CSSEEEEECCT-H------------HHHHHH-HHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHC-CcEEcCC-CCeEEEEECCC-C------------CHHHHH-HHHHHCCEEEEE
Confidence            9999999999887 7776544 56678876641 0            133434 444567999987

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=2.1e-31  Score=275.02  Aligned_cols=330  Identities=12%  Similarity=0.081  Sum_probs=247.6

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+.+++.+.+..... ....|++..|..++++++++++.+.+|.    +++++|+|+++++..+++++.++||    
T Consensus        58 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~~~~~~~~~~~gd----  128 (398)
T 3a2b_A           58 TDTRIIKAAQDALEKYGT-GCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSNLGPLSCLMGRND----  128 (398)
T ss_dssp             GCHHHHHHHHHHHHHHCS-CCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHHSSCTTC----
T ss_pred             CCHHHHHHHHHHHHHcCC-CCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHHHHhCCCC----
Confidence            367899999988876322 2334777778888999999999888773    5899999999999999999999888    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .|+++.|+|..+...++..|.+++.++.       +|++.|++.+++... .++++|++++|+||||.+++   +++|++
T Consensus       129 ~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~-~~~~~v~~~~~~nptG~~~~---~~~l~~  197 (398)
T 3a2b_A          129 YILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPE-DSAKLICTDGIFSMEGDIVN---LPELTS  197 (398)
T ss_dssp             EEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCS-SSCEEEEEESBCTTTCCBCC---HHHHHH
T ss_pred             EEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhcc-CCceEEEEeCCCCCCCCccC---HHHHHH
Confidence            9999999999999999999999999875       489999999876311 15889999999999999988   899999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCce-eEEEEecccccCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME-LASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                      +|+++|+++|+||+|+.+.++.  ...++.+.. +.     ..+ +++++|+||.+ |++|   ||++   .++++++.+
T Consensus       198 ~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~-~~-----~~~~di~~~s~sK~~-~~~G---G~~~---~~~~~~~~l  262 (398)
T 3a2b_A          198 IANEFDAAVMVDDAHSLGVIGH--KGAGTASHF-GL-----NDDVDLIMGTFSKSL-ASLG---GFVA---GDADVIDFL  262 (398)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSG--GGCCHHHHH-TC-----GGGCSEEEEESSSTT-CSSC---EEEE---ECHHHHHHH
T ss_pred             HHHHcCcEEEEECCCcccccCC--CCCchHhhc-CC-----CcCCeEEEecccccc-cCCC---cEEE---eCHHHHHHH
Confidence            9999999999999999887632  123333321 11     112 47788999999 6778   9998   689999988


Q ss_pred             HHhh-h-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc-hhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        265 HKSI-S-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT-VMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       265 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      .... . ...+.+.+                                  .+. ++..+++          . .++.++++
T Consensus       263 ~~~~~~~~~~~~~~~----------------------------------~~~a~~~~~l~----------~-~~~~~~~~  297 (398)
T 3a2b_A          263 KHNARSVMFSASMTP----------------------------------ASVASTLKALE----------I-IQNEPEHI  297 (398)
T ss_dssp             HHHCHHHHSSBCCCH----------------------------------HHHHHHHHHHH----------H-HHHCTHHH
T ss_pred             HHhcccceecCCCCH----------------------------------HHHHHHHHHHH----------H-HhhCHHHH
Confidence            7742 2 22233333                                  222 2222221          1 23356788


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCc
Q psy13922        342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGT  421 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~  421 (509)
                      +.++++++.+.+.|+++ |+++.++. ++++|+.++...            +...+...+++ +||.+.||..|..+   
T Consensus       298 ~~~~~~~~~l~~~L~~~-g~~~~~~~-g~~~~~~~~~~~------------~~~~l~~~l~~-~gi~v~~~~~~~~~---  359 (398)
T 3a2b_A          298 EKLWKNTDYAKAQLLDH-GFDLGATE-SPILPIFIRSNE------------KTFWVTKMLQD-DGVFVNPVVSPAVP---  359 (398)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCBCSCC-SSEEEEECCCHH------------HHHHHHHHHHH-TTEECEEECTTTSC---
T ss_pred             HHHHHHHHHHHHHHHhc-CCCcCCCC-CCEEEEEcCCHH------------HHHHHHHHHHH-CCcEEEeeCCCCCC---
Confidence            89999999999999998 88877666 567787664111            13344445554 59999999887651   


Q ss_pred             cccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHH
Q psy13922        422 YHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFRE  499 (509)
Q Consensus       422 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~  499 (509)
                                                                  .+.+        ++|++++  ++++++++++++|++
T Consensus       360 --------------------------------------------~~~~--------~iRis~~~~~~~e~i~~~~~~l~~  387 (398)
T 3a2b_A          360 --------------------------------------------AEES--------LIRFSLMATHTYDQIDEAIEKMVK  387 (398)
T ss_dssp             --------------------------------------------GGGC--------EEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             --------------------------------------------CCCc--------eEEEEEeCCCCHHHHHHHHHHHHH
Confidence                                                        1122        8999999  599999999999999


Q ss_pred             HHHHHH
Q psy13922        500 FHEEFL  505 (509)
Q Consensus       500 ~~~~~~  505 (509)
                      +++++.
T Consensus       388 ~l~~~~  393 (398)
T 3a2b_A          388 VFKQAE  393 (398)
T ss_dssp             HHHHCC
T ss_pred             HHHHhC
Confidence            987643

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.7e-31  Score=268.79  Aligned_cols=342  Identities=14%  Similarity=0.119  Sum_probs=248.7

Q ss_pred             HHHHHHHhhcCCCCC---CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeC
Q psy13922          7 LSLQVLALVSLPQLF---DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSA   83 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~---~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~   83 (509)
                      .+|+.+......-++   +++.+|+.+++++.+.+.       .+|++.  ..++++++++++.+.+|.+ +++++++|+
T Consensus         9 ~~r~~f~~~~~~~~l~~~~~~~~~~~v~~a~~~~~~-------~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~   78 (386)
T 2dr1_A            9 AFKEVYEMVKPKYKLFTAGPVACFPEVLEIMKVQMF-------SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPS   78 (386)
T ss_dssp             HHHHHHHHHSCCSEECCSSSCCCCHHHHHHTTSCCC-------CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESS
T ss_pred             HHHHHHhhcCccceeecCCCcCCcHHHHHHHhcccc-------cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeC
Confidence            566666654433333   344567777777654432       136542  3778888888888888865 467899999


Q ss_pred             CHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceE
Q psy13922         84 GASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRA  161 (509)
Q Consensus        84 G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~  161 (509)
                      |+++++..++++++++||    .|+++.|+|.+  +...++..|++++.++.++  ++.+|++.|++.+++.   +++++
T Consensus        79 g~t~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~---~~~~~  149 (386)
T 2dr1_A           79 SGTGIMEASIRNGVSKGG----KVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKN---PDVEA  149 (386)
T ss_dssp             CHHHHHHHHHHHHSCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHC---TTCCE
T ss_pred             ChHHHHHHHHHHhhcCCC----eEEEEcCCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcC---CCCcE
Confidence            999999999999988888    99999999998  8888899999999999875  3578999999999641   16899


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       162 ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      |++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+.     .++..          ....++++|+||.+ 
T Consensus       150 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~----------~~~di~~~s~sK~~-  210 (386)
T 2dr1_A          150 VTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-----IKFDK----------WGLDVVFSSSQKAF-  210 (386)
T ss_dssp             EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-----CCTTT----------TTCSEEEEETTSTT-
T ss_pred             EEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-----ccccc----------cCCcEEEEeccccc-
Confidence            999999999999987   899999999999999999999876432     11111          11256788999999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHH----------------hh---hcccCcchhhhhccccccCCCCCchhHHHHHHHh
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHK----------------SI---SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAV  302 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (509)
                      |.+ .++||++   .++++++.+..                ..   ...++++..                         
T Consensus       211 ~~~-~g~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  261 (386)
T 2dr1_A          211 GVP-PGLAIGA---FSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMP-------------------------  261 (386)
T ss_dssp             CCC-SSCEEEE---ECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHH-------------------------
T ss_pred             cCC-CceEEEE---ECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHH-------------------------
Confidence            544 2489998   67888877632                10   111223333                         


Q ss_pred             hhcccCcccccchhhcccCCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCeeccCC---ceeEEeecCC
Q psy13922        303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE--KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ---GAMYAFPQMK  377 (509)
Q Consensus       303 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~  377 (509)
                               .+.++..+++          .+.++  ++++++.++++++.+.+.|+++ |+++..+.   .+.++|++++
T Consensus       262 ---------~~~a~~~~l~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  321 (386)
T 2dr1_A          262 ---------QVFGINVALR----------IIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTP  321 (386)
T ss_dssp             ---------HHHHHHHHHH----------HHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECC
T ss_pred             ---------HHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcC
Confidence                     4444443322          22222  6788899999999999999998 88877664   3667776654


Q ss_pred             CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhh
Q psy13922        378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESL  457 (509)
Q Consensus       378 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (509)
                        .         +. +...+...+++ +||.+.||..+..                                        
T Consensus       322 --~---------~~-~~~~~~~~l~~-~gi~v~~~~~~~~----------------------------------------  348 (386)
T 2dr1_A          322 --P---------GI-KGDEVYEAMRK-RGFELAKGYGSVK----------------------------------------  348 (386)
T ss_dssp             --T---------TC-CHHHHHHHHHH-TTEECEECCGGGT----------------------------------------
T ss_pred             --C---------CC-CHHHHHHHHHH-CCeEEecCccccC----------------------------------------
Confidence              1         21 24444455554 5999999874322                                        


Q ss_pred             hcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        458 ERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                              .+          ++|+++.  ++++++++++++|+++++++..
T Consensus       349 --------~~----------~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  381 (386)
T 2dr1_A          349 --------EK----------TFRIGHMGYMKFEDIQEMLDNLREVINELKK  381 (386)
T ss_dssp             --------TT----------EEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CC----------EEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence                    22          8999999  7999999999999999987643

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.98  E-value=5.4e-31  Score=271.16  Aligned_cols=320  Identities=11%  Similarity=0.089  Sum_probs=235.7

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      +...|+.+++++.+.+..       .|++.  ..++++++++++.+.+|.  +++ +|++|+|+++++..++++++++||
T Consensus        42 ~~~~~~~v~~a~~~~~~~-------~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~~~gd  110 (393)
T 1vjo_A           42 PSNAHPSVLQAMNVSPVG-------HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAVEPGD  110 (393)
T ss_dssp             CCCCCHHHHHHHSSCCCC-------TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred             CCCCCHHHHHHHhccccc-------ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhccCCCC
Confidence            344577887777554432       36542  467888888888888774  567 899999999999999999998888


Q ss_pred             CCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          .|+++.|+|.+  +...++..|++++.++.+++  +.+|++.|++.+++.    ++++|++++|+||||.+++   
T Consensus       111 ----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~---  177 (393)
T 1vjo_A          111 ----VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG--EVFSLEELRTALETH----RPAILALVHAETSTGARQP---  177 (393)
T ss_dssp             ----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC---
T ss_pred             ----EEEEEcCChhHHHHHHHHHHcCCceEEEecCCC--CCCCHHHHHHHHhhC----CceEEEEeccCCCcceecc---
Confidence                99999999999  88989999999999998753  578999999999864    5899999999999999987   


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|+++|+++|+||+|.. .   . ....+.    .      ....+++.|+||.+ |.+| |+||++   .+++
T Consensus       178 l~~i~~l~~~~~~~li~Dea~~~-g---~-~~~~~~----~------~~~di~~~s~sK~l-~~~~-~~G~l~---~~~~  237 (393)
T 1vjo_A          178 LEGVGELCREFGTLLLVDTVTSL-G---G-VPIFLD----A------WGVDLAYSCSQKGL-GCSP-GASPFT---MSSR  237 (393)
T ss_dssp             CTTHHHHHHHHTCEEEEECTTTT-T---T-SCCCTT----T------TTCSEEECCSSSTT-CSCS-SCEEEE---ECHH
T ss_pred             HHHHHHHHHHcCCEEEEECCccc-c---C-cCCccc----c------cCccEEEEcCcccc-cCCC-ceEEEE---ECHH
Confidence            88999999999999999999983 2   1 111111    1      11256677999999 5677 999998   6888


Q ss_pred             HHHHHHHhhh---cc-----------------c-CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        260 VKAMLHKSIS---AM-----------------L-CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       260 ~~~~l~~~~~---~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      +++.+.....   .+                 . +++.+                                  .+.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------------------------------~~~a~~~  283 (393)
T 1vjo_A          238 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPIN----------------------------------LYYALRE  283 (393)
T ss_dssp             HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHH----------------------------------HHHHHHH
T ss_pred             HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHH----------------------------------HHHHHHH
Confidence            8887754210   00                 0 22222                                  4444444


Q ss_pred             ccCCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCc
Q psy13922        319 VVNPPQPGEPSYEQF-SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPS  394 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~  394 (509)
                      +++          .. ..+++++++.++++++++.+.|+++ ++++..+.+   +.++++.++  .         +. +.
T Consensus       284 al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~---------~~-~~  340 (393)
T 1vjo_A          284 ALR----------LIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIP--D---------GV-DG  340 (393)
T ss_dssp             HHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC--T---------TC-CH
T ss_pred             HHH----------HHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcC--C---------CC-CH
Confidence            432          11 1236788899999999999999998 888877664   234554442  1         21 24


Q ss_pred             HHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCC
Q psy13922        395 VLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVP  474 (509)
Q Consensus       395 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (509)
                      ..+...+++++||.+.||..|..                                                ++       
T Consensus       341 ~~~~~~l~~~~gi~v~~g~~~~~------------------------------------------------~~-------  365 (393)
T 1vjo_A          341 KAVARRLLNEHNIEVGGGLGELA------------------------------------------------GK-------  365 (393)
T ss_dssp             HHHHHHHHHHHCEECEECCGGGT------------------------------------------------TT-------
T ss_pred             HHHHHHHHhhCCEEEecCccccC------------------------------------------------CC-------
Confidence            45555555556999999886543                                                33       


Q ss_pred             CceeEEEEe-e--cChHHHHHHHHHHHHHH
Q psy13922        475 GTYHFRTTI-L--PQPEKLKAMLEKFREFH  501 (509)
Q Consensus       475 ~~~~~Rls~-~--~~~~~i~~~~~~l~~~~  501 (509)
                         ++|+++ .  .+++++++++++|++++
T Consensus       366 ---~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          366 ---VWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             ---EEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             ---EEEEeCCccCChHHHHHHHHHHHHHHh
Confidence               899994 3  56778999999999876

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=2.6e-30  Score=266.46  Aligned_cols=376  Identities=13%  Similarity=0.116  Sum_probs=252.4

Q ss_pred             CchHHHHHHHHhhcC----CCC--C---CCCCCCHHHHHHHHHHHhcccCCC-----cccCCCCcchHHHHHHHHHHHhh
Q psy13922          3 PVFSLSLQVLALVSL----PQL--F---DDPRFPDDVKQRAQAVLDGCRGQS-----VGSYTDSPGIEIIRRHVAQYISR   68 (509)
Q Consensus         3 ~~~~~~~~~~~~~~~----~~~--~---~~~~~p~~v~~a~~~~l~~~~~~~-----~~~Y~~~~g~~~lr~~va~~l~~   68 (509)
                      -+++.+|+.+.....    +.+  +   ..+..|+.+++++.+.+.......     ...|.+..+..++|++++++++ 
T Consensus         3 ~~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-   81 (406)
T 1kmj_A            3 FSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN-   81 (406)
T ss_dssp             CCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCHHHHHHhCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC-
Confidence            355678877776542    112  2   223468899999999998732111     1113456678899999999883 


Q ss_pred             hcCCCCCCCcEEEeCCHHHHHHHHHHHh----hcCCCCCCCeEEEcCCCChhH----HHHHHhcCCEEEEEecCCCCCCC
Q psy13922         69 RDGQPADWQDVILSAGASDGIKSVLKLL----IEDVDGKKPGVLIPIPQYPLY----SASLAEFNMEQIGYYLDESKQWG  140 (509)
Q Consensus        69 ~~g~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~  140 (509)
                         .. ++++|++|+|+++++..+++++    .++||    .|+++.|+|++.    ...++..|++++.++.+++  +.
T Consensus        82 ---~~-~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~  151 (406)
T 1kmj_A           82 ---AR-SAEELVFVRGTTEGINLVANSWGNSNVRAGD----NIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GT  151 (406)
T ss_dssp             ---CS-CGGGEEEESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT--SC
T ss_pred             ---CC-CCCeEEEeCChhHHHHHHHHHhhhhcCCCCC----EEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC--CC
Confidence               11 4689999999999999999999    77888    999999998764    3456778999999998753  57


Q ss_pred             CCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHH
Q psy13922        141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVE  220 (509)
Q Consensus       141 ~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~  220 (509)
                      +|++.|++.+++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+..     ..++...   
T Consensus       152 ~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~-----~~~~~~~---  215 (406)
T 1kmj_A          152 LQLETLPTLFDE-----KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQAL---  215 (406)
T ss_dssp             BCGGGHHHHCCT-----TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHH---
T ss_pred             cCHHHHHHHhcc-----CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC-----CCccccc---
Confidence            899999999876     7999999999999999999   89999999999999999999986432     1223221   


Q ss_pred             hCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHH
Q psy13922        221 MGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ  300 (509)
Q Consensus       221 ~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (509)
                       +      ..+++.|+||.+ |++|  +||++   .++++++.+......+.......... ...+....          
T Consensus       216 -~------~d~~~~s~~K~~-g~~G--~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------  271 (406)
T 1kmj_A          216 -D------CDFYVFSGHKLY-GPTG--IGILY---VKEALLQEMPPWEGGGSMIATVSLSE-GTTWTKAP----------  271 (406)
T ss_dssp             -T------CSEEEEEGGGTT-SCTT--CEEEE---ECHHHHHHCCCSSCSTTSEEEEETTT-EEEECCTT----------
T ss_pred             -C------CCEEEEEchhcc-CCCC--cEEEE---EeHHHHhhcCCcccCCCceeeccccc-ccccCCCc----------
Confidence             1      156678999999 7888  79998   68888887754332111000000000 00000000          


Q ss_pred             HhhhcccCcccccchhhcccCCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC--CceeEEeecCC
Q psy13922        301 AVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS-REKQSVLDSLKQRAKMVADTFNSIEGMSCNPV--QGAMYAFPQMK  377 (509)
Q Consensus       301 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~~g~~~~~~~~  377 (509)
                      ..+..++......+++..+++          ... .+++++++.++++++++.+.|+++|++++..+  .++++.| .++
T Consensus       272 ~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~  340 (406)
T 1kmj_A          272 WRFEAGTPNTGGIIGLGAALE----------YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLG  340 (406)
T ss_dssp             GGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EET
T ss_pred             hhccCCCCCHHHHHHHHHHHH----------HHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EEC
Confidence            000001111011222212211          111 13667888999999999999999888888877  7887776 343


Q ss_pred             CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhh
Q psy13922        378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESL  457 (509)
Q Consensus       378 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (509)
                                  +. +..++ .+.|.++||.++||..|...                               ..      
T Consensus       341 ------------~~-~~~~~-~~~l~~~gi~v~~g~~~~~~-------------------------------~~------  369 (406)
T 1kmj_A          341 ------------KH-HAYDV-GSFLDNYGIAVRTGHHCAMP-------------------------------LM------  369 (406)
T ss_dssp             ------------TC-CHHHH-HHHHHHTTEECEEECTTCHH-------------------------------HH------
T ss_pred             ------------CC-CHHHH-HHHHhhCCcEEEeccccchH-------------------------------HH------
Confidence                        11 23343 46777889999998866531                               00      


Q ss_pred             hcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHH
Q psy13922        458 ERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                      +..     ...+        ++|+++.  +++++++++++.|+++++.+
T Consensus       370 ~~~-----g~~~--------~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          370 AYY-----NVPA--------MCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             HHT-----TCSC--------EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc-----CCCC--------eEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            000     0112        8999999  49999999999999988754

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=7.3e-30  Score=264.51  Aligned_cols=353  Identities=12%  Similarity=0.140  Sum_probs=242.0

Q ss_pred             CCCHHHHHHHHHHHhcccCC---CcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh---
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQ---SVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL---   96 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~---~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---   96 (509)
                      ..|+.+++++.+.+......   ....|++  ..+..+++++++++++.    . ++++|++|+|+++++..+++++   
T Consensus        39 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~----~-~~~~v~~~~g~t~a~~~~~~~~~~~  113 (420)
T 1t3i_A           39 QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINA----R-SPREIVYTRNATEAINLVAYSWGMN  113 (420)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTC----S-CGGGEEEESSHHHHHHHHHHHTHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCC----C-CCCeEEEcCChHHHHHHHHHHhhhc
Confidence            56889999999998763211   1233654  46788999999999842    1 5689999999999999999999   


Q ss_pred             -hcCCCCCCCeEEEcCCCChh----HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922         97 -IEDVDGKKPGVLIPIPQYPL----YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus        97 -~~~gd~~~~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                       .++||    .|+++.|+|.+    +...++..|.+++.++.++  ++.+|++.|++.+++     ++++|++++|+|||
T Consensus       114 ~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~-----~~~~v~~~~~~npt  182 (420)
T 1t3i_A          114 NLKAGD----EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE--QESFDLEHFKTLLSE-----KTKLVTVVHISNTL  182 (420)
T ss_dssp             HCCTTC----EEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT--TSSBCHHHHHHHCCT-----TEEEEEEESBCTTT
T ss_pred             ccCCCC----EEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC--CCCcCHHHHHHhhCC-----CceEEEEeCCcccc
Confidence             77887    99999999998    5666778899999999874  457899999999876     79999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      |.+++   +++|.++|+++|+++|+|++|+.+..     ..++...    +      ..+++.|+||.+ |.+|  +||+
T Consensus       183 G~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~----~------~di~~~s~sK~~-~~~g--~G~~  241 (420)
T 1t3i_A          183 GCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLI----D------CDWLVASGHKMC-APTG--IGFL  241 (420)
T ss_dssp             CBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHH----T------CSEEEEEGGGTT-SCTT--CEEE
T ss_pred             cCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc-----cCchhhc----C------CCEEEEehhhhc-CCCc--eEEE
Confidence            99999   89999999999999999999986432     1233322    1      146678999988 6777  8999


Q ss_pred             eeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      +   .++++++.+......+........ ....+ ....          ..+..+........++..+++          
T Consensus       242 ~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~----------~~~~~~~~~~~~~~a~~~al~----------  296 (420)
T 1t3i_A          242 Y---GKEEILEAMPPFFGGGEMIAEVFF-DHFTT-GELP----------HKFEAGTPAIAEAIALGAAVD----------  296 (420)
T ss_dssp             E---ECHHHHHHSCCCSCSTTSEEEECS-SCEEE-CCTT----------GGGCCSSCCHHHHHHHHHHHH----------
T ss_pred             E---EchHHHhhcCceecCCCccccccc-cccCC-CCch----------hhccCCCccHHHHHHHHHHHH----------
Confidence            8   688888877544321110000000 00000 0000          000000000001222221111          


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC------ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        332 QFS-REKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ------GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       332 ~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                      ... .+++++++.++++++.+.+.|+++|++++..+.      ++++.| .++            +. +..+ +.+.|.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~~~------------~~-~~~~-~~~~l~~  361 (420)
T 1t3i_A          297 YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF-NVA------------GL-HASD-VATMVDQ  361 (420)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE-EET------------TB-CHHH-HHHHHHT
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEE-EEC------------CC-CHHH-HHHHHHH
Confidence            111 125778889999999999999998888887654      666655 343            11 2333 3567788


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCC-CCCCCCCCceeEEEEe
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPG-AGFGQVPGTYHFRTTI  483 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Rls~  483 (509)
                      +||.+.||..|...                               ..      ..      .+ .+        ++|+++
T Consensus       362 ~gi~v~~~~~~~~~-------------------------------~~------~~------~g~~~--------~iRis~  390 (420)
T 1t3i_A          362 DGIAIRSGHHCTQP-------------------------------LH------RL------FDASG--------SARASL  390 (420)
T ss_dssp             TTEECBCSCTTCHH-------------------------------HH------HH------TTCCC--------CEEEEC
T ss_pred             CCeEEeeccccchH-------------------------------HH------Hh------cCCCC--------eEEEec
Confidence            89999998766430                               00      00      11 22        899999


Q ss_pred             e--cChHHHHHHHHHHHHHHHHHH
Q psy13922        484 L--PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       484 ~--~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      .  +++++++.++++|++++++++
T Consensus       391 ~~~~~~~~i~~~~~~l~~~~~~~~  414 (420)
T 1t3i_A          391 YFYNTKEEIDLFLQSLQATIRFFS  414 (420)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9  599999999999999987653

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=3.7e-30  Score=263.38  Aligned_cols=344  Identities=14%  Similarity=0.120  Sum_probs=231.1

Q ss_pred             CCCCHHHHHHHHHHHhccc--CCC--cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--
Q psy13922         24 PRFPDDVKQRAQAVLDGCR--GQS--VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~--~~~--~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--   97 (509)
                      +..|+.+++++.+.+...-  +..  ...|.+..+..++++.+++++    |  +++++|++|+|+++++..+++++.  
T Consensus        11 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~~~~~   84 (384)
T 1eg5_A           11 TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESINWILKTVAET   84 (384)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEECCHHHHHHHHHHhhhhh
Confidence            4668999999999987621  111  112445567789999999998    3  567899999999999999999998  


Q ss_pred             --cCCCCCCCeEEEcCCCChhHHHHH---HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         98 --EDVDGKKPGVLIPIPQYPLYSASL---AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        98 --~~gd~~~~~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                        ++||    .|+++.|+|.++...+   +..|.+++.++.+++  +.+|++.|++.+++     ++++|++++|+||||
T Consensus        85 ~~~~gd----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG  153 (384)
T 1eg5_A           85 FEKRKR----TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR--GVVKLEELEKLVDE-----DTFLVSIMAANNEVG  153 (384)
T ss_dssp             TTTTCC----EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT--SCBCHHHHHHHCCT-----TEEEEEEESBCTTTC
T ss_pred             ccCCCC----EEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC--CccCHHHHHHHhCC-----CCeEEEEECCCCCcc
Confidence              6887    9999999999887665   678999999998753  57899999999876     799999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCC--cEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        173 QVLTKENIQDIIKFAHREK--LFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~--i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      .+++   +++|.++|+++|  ++||+||+|+..    . ...++.    +.      ...+++.|+||.+ |++|  +||
T Consensus       154 ~~~~---~~~i~~l~~~~~~~~~li~Dea~~~~----~-~~~~~~----~~------~~di~~~s~sK~~-g~~G--~G~  212 (384)
T 1eg5_A          154 TIQP---VEDVTRIVKKKNKETLVHVDAVQTIG----K-IPFSLE----KL------EVDYASFSAHKFH-GPKG--VGI  212 (384)
T ss_dssp             BBCC---HHHHHHHHHHHCTTCEEEEECTTTTT----T-SCCCCT----TT------CCSEEEEEGGGGT-SCTT--CEE
T ss_pred             cccC---HHHHHHHHHhcCCceEEEEEhhhhcC----C-cccCch----hc------CCCEEEecHHHhc-CCCc--eEE
Confidence            9999   788999999999  999999999731    1 111111    11      1256677999999 7888  799


Q ss_pred             EeeecCCHHH--HHHHHHhh----hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        251 SEVINLDPGV--KAMLHKSI----SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       251 v~~~~~~~~~--~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      ++   .++++  ...+....    ...++++.+                                  .+.++..+++   
T Consensus       213 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~---  252 (384)
T 1eg5_A          213 TY---IRKGVPIRPLIHGGGQERGLRSGTQNVP----------------------------------GIVGAARAME---  252 (384)
T ss_dssp             EE---ECTTSCCCCSBCSSCTTTTTBCSCCCHH----------------------------------HHHHHHHHHH---
T ss_pred             EE---EcCCCccccccccCcccccccCCCCChH----------------------------------HHHHHHHHHH---
Confidence            98   45543  11111000    011223333                                  3444433322   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-c--eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-G--AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                             ...++++++++.++++++.+.+.|++ +++++..+. +  +.++++.+.            +. +...+ .+.
T Consensus       253 -------~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~-~~~  310 (384)
T 1eg5_A          253 -------IAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFP------------NI-RGSTL-QNL  310 (384)
T ss_dssp             -------HHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECT------------TC-CHHHH-HHH
T ss_pred             -------HHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeC------------CC-CHHHH-HHH
Confidence                   22345788899999999999999998 488876542 2  234444332            11 23443 455


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |.++||.+.||..|+....                          .|     ...++..|.   +.     ..+..++||
T Consensus       311 l~~~gi~v~~g~~~~~~~~--------------------------~~-----~~~~~~~g~---~~-----~~~~~~iRi  351 (384)
T 1eg5_A          311 LSGYGIYVSTSSACTSKDE--------------------------RL-----RHVLDAMGV---DR-----RIAQGAIRI  351 (384)
T ss_dssp             HHHTTEECBC-------------------------------------------CHHHHTTC---CH-----HHHHHEEEE
T ss_pred             HhhCCeEEeccccccCCCC--------------------------cc-----hHHHHHcCC---Ch-----hhcCCeEEE
Confidence            6788999999987765100                          00     000000000   00     001228999


Q ss_pred             Eee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        482 TIL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       482 s~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      +++  ++++++++++++|+++++++++
T Consensus       352 ~~~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          352 SLCKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999  7999999999999999877543

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.97  E-value=3e-29  Score=255.96  Aligned_cols=347  Identities=12%  Similarity=0.068  Sum_probs=224.5

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh----cC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI----ED   99 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~   99 (509)
                      ...|+.+++++.+.+.+........|....+..++.+.+.+.+.+.+|  +++++|++|+|+++++..+++++.    ++
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~   87 (382)
T 4hvk_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN--GGGGTVVFTSGATEANNLAIIGYAMRNARK   87 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT--CTTEEEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC--CCcCeEEEECCchHHHHHHHHHhhhhhcCC
Confidence            345889999999998773221111232222333444444444444445  457789999999999999999998    88


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHh---cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAE---FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ||    .|+++.|+|.++...+..   .|++++.++.+++  +.+|++.|++.+++     ++++|++++|+||||.+++
T Consensus        88 gd----~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~  156 (382)
T 4hvk_A           88 GK----HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY--GEVDVSFIDQKLRD-----DTILVSVQHANNEIGTIQP  156 (382)
T ss_dssp             CC----EEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT--SCBCHHHHHHHCCT-----TEEEEECCSBCTTTCBBCC
T ss_pred             CC----EEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC--CCcCHHHHHHHhcc-----CceEEEEECCCCCceeeCC
Confidence            88    999999999998776554   5999999998754  47899999999976     7899999999999999988


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                         +++|.++|+++|+ +|+|++|.....     ..++...    +      ..+++.|+||.+ |.+|+++.++    .
T Consensus       157 ---~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~~----~------~d~~~~s~~K~~-g~~g~g~~~~----~  212 (382)
T 4hvk_A          157 ---VEEISEVLAGKAA-LHIDATASVGQI-----EVDVEKI----G------ADMLTISSNDIY-GPKGVGALWI----R  212 (382)
T ss_dssp             ---HHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHHH----T------CSEEEEESGGGT-SCTTCEEEEE----E
T ss_pred             ---HHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchhc----C------CCEEEEeHHHhc-CCCceEEEEE----c
Confidence               7889999999999 999999875221     1222221    1      146677999988 6677544443    2


Q ss_pred             CHHHHHHHHHhhhc--------ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        257 DPGVKAMLHKSISA--------MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       257 ~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      ++.   .+......        ...++..                                  .+.++..++        
T Consensus       213 ~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~al--------  247 (382)
T 4hvk_A          213 KEA---KLQPVILGGGQENGLRSGSENVP----------------------------------SIVGFGKAA--------  247 (382)
T ss_dssp             TTC---CCCCSSCSSCTGGGTSCSCCCHH----------------------------------HHHHHHHHH--------
T ss_pred             Ccc---CcCcccccCCCcCccccCCcCHH----------------------------------HHHHHHHHH--------
Confidence            222   11111100        1111112                                  233333222        


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                        ....++++++++.++++++.+.+.|+++|++.+..+.+   +.++++.+.            +. +... +...|.++
T Consensus       248 --~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~-~~~~l~~~  311 (382)
T 4hvk_A          248 --EITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------------YI-EGES-IVLSLDMA  311 (382)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------------TC-CHHH-HHHHHHHT
T ss_pred             --HHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC------------CC-CHHH-HHHHHHHC
Confidence              22234578899999999999999999998888776543   223443333            21 2334 35666778


Q ss_pred             CeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-
Q psy13922        406 GICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-  484 (509)
Q Consensus       406 gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-  484 (509)
                      ||.+.+|..|.....                          .|.     ..+...|.......+        ++|+++. 
T Consensus       312 gi~v~~g~~~~~~~~--------------------------~~~-----~~~~~~g~~~~~~~~--------~iRl~~~~  352 (382)
T 4hvk_A          312 GIQASTGSACSSKTL--------------------------QPS-----HVLMACGLKHEEAHG--------TLLLTLGR  352 (382)
T ss_dssp             TCBCBCC----------------------------------CCC-----HHHHHTTCCHHHHHT--------EEEEECCT
T ss_pred             CEEEeeCCccCCCCC--------------------------cch-----HHHHHcCCChhhcCC--------eEEEEcCC
Confidence            999999988776210                          000     000000000000012        8999999 


Q ss_pred             -cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        485 -PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       485 -~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                       ++++++++++++|+++++++++.
T Consensus       353 ~~t~e~i~~~~~~l~~~~~~~~~~  376 (382)
T 4hvk_A          353 YNTDEDVDRLLEVLPGVIERLRSM  376 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhh
Confidence             68999999999999999887654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=1.3e-28  Score=253.65  Aligned_cols=329  Identities=12%  Similarity=0.104  Sum_probs=234.1

Q ss_pred             CHHHHHHHHHHHhcccCCC-c--ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQS-V--GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~-~--~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      |+.+.+++.+.+....... .  ..|+...+..++++.++++++       .++.|++++| ++++..++.+++++||  
T Consensus        59 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~~sG-t~a~~~~l~~~~~~gd--  128 (399)
T 3tqx_A           59 HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG-------TDDTILYSSC-FDANGGLFETLLGPED--  128 (399)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT-------CSEEEEESCH-HHHHHTTHHHHCCTTC--
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC-------CCcEEEECch-HHHHHHHHHHhcCCCC--
Confidence            6899999998887732111 1  114455567889999998883       1245555555 7899999999999988  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                        .|+++.|+|..+...++..|.+++.++.       .|++.|++.+++.... .++++|++++|+||||.+++   +++
T Consensus       129 --~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~  196 (399)
T 3tqx_A          129 --AIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKS  196 (399)
T ss_dssp             --EEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHH
T ss_pred             --EEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHH
Confidence              9999999999999999999999999875       3678999988864321 26899999999999999999   899


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |+++|+++|+++|+||+|+...++.  ...+..+.. ++.    ....++++|+||.+ |  |+++||++   .++++++
T Consensus       197 i~~l~~~~~~~li~De~~~~~~~~~--~~~~~~~~~-~~~----~~~di~~~s~sK~~-~--g~~gG~~~---~~~~~~~  263 (399)
T 3tqx_A          197 ICDLADKYNALVMVDDSHAVGFIGE--NGRGTPEYC-GVA----DRVDILTGTLGKAL-G--GASGGYTS---GHKEIIE  263 (399)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSST--TSCCHHHHH-TCT----TCCSEEEEESSSSS-C--SSCCEEEE---ECHHHHH
T ss_pred             HHHHHHHcCCEEEEECCccccccCC--CCCchHHhh-CCC----CCCcEEEecchHhc-c--cCceEEEE---cCHHHHH
Confidence            9999999999999999996433322  222333321 110    11257788999999 5  45669998   7999999


Q ss_pred             HHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        263 MLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       263 ~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      .+......+   ...+..                                  .++++...++          ...++.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~----------~~~~~~~~  299 (399)
T 3tqx_A          264 WLRNRSRPYLFSNTVAPV----------------------------------IVATSLKVLE----------LLKTEGPQ  299 (399)
T ss_dssp             HHHHHCHHHHSSCCCCHH----------------------------------HHHHHHHHHH----------HHHHTHHH
T ss_pred             HHHHhCcceeccCCCcHH----------------------------------HHHHHHHHHH----------HHhhccHH
Confidence            988753322   123333                                  2222222221          11145788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      +++.++++++++.+.|+++ |+++.++.+++ +|+.+....            +...+...+ .++||.+.|+..+... 
T Consensus       300 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~l-~~~gi~v~~~~~~~~~-  363 (399)
T 3tqx_A          300 LRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVMLGDAQ------------LATNMADHL-LQEGIYVVGFSYPVVP-  363 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEEEECHH------------HHHHHHHHH-HHTTEECCEECTTTSC-
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCHH------------HHHHHHHHH-HHCCCEEeeeCCCCCC-
Confidence            9999999999999999998 88877666655 555554111            134444444 4579999987544321 


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKF  497 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l  497 (509)
                                                                    .+.+        ++|+++.  .+++++++++++|
T Consensus       364 ----------------------------------------------~~~~--------~iRi~~~~~~~~~~i~~~~~~l  389 (399)
T 3tqx_A          364 ----------------------------------------------MGKA--------RIRVQMSAVHTQQQLDRAIEAF  389 (399)
T ss_dssp             ----------------------------------------------TTCE--------EEEEECCTTCCHHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCc--------eEEEEeecCCCHHHHHHHHHHH
Confidence                                                          2222        9999997  8999999999999


Q ss_pred             HHHHHHH
Q psy13922        498 REFHEEF  504 (509)
Q Consensus       498 ~~~~~~~  504 (509)
                      +++++++
T Consensus       390 ~~~~~~~  396 (399)
T 3tqx_A          390 GQVGKKL  396 (399)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.97  E-value=1.4e-29  Score=260.31  Aligned_cols=343  Identities=13%  Similarity=0.075  Sum_probs=232.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCC--CCcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYT--DSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~--~~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~   98 (509)
                      |+...|+.+++++.+.+..       .|.  +..+..++++.+++++    |  .+++ +|++|+|+++++..+++++.+
T Consensus        26 g~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g--~~~~~~i~~~~g~t~a~~~~~~~~~~   92 (393)
T 2huf_A           26 GPSNAPQRVLDAMSRPILG-------HLHPETLKIMDDIKEGVRYLF----Q--TNNIATFCLSASGHGGMEATLCNLLE   92 (393)
T ss_dssp             SCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHH----T--CCCSEEEEESSCHHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHh----C--CCCCcEEEEcCcHHHHHHHHHHHHhC
Confidence            4445688888877655433       132  2346678888888887    3  3454 899999999999999999988


Q ss_pred             CCCCCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +||    .|+++.|+|.++  ...++..|.+++.++.+++  +.+|++.|++.+++.    ++++|++++|+||||.+++
T Consensus        93 ~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~  162 (393)
T 2huf_A           93 DGD----VILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIH----KPSVLFLTQGDSSTGVLQG  162 (393)
T ss_dssp             TTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC
T ss_pred             CCC----EEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhcc----CCcEEEEEccCCCccccCC
Confidence            888    999999999884  3445678999999998754  478999999999864    6899999999999999998


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                         +++|+++|+++|+++|+|+++....     ...++..    .      ...+++.|+||.+.|++|+  ||++   .
T Consensus       163 ---l~~i~~~~~~~~~~li~D~a~~~~~-----~~~~~~~----~------~~d~~~~s~sK~l~g~~G~--G~~~---~  219 (393)
T 2huf_A          163 ---LEGVGALCHQHNCLLIVDTVASLGG-----APMFMDR----W------EIDAMYTGSQKVLGAPPGI--TPVS---F  219 (393)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTTBTT-----BCCCTTT----T------TCSEEECCSSSTTCCCSSC--EEEE---E
T ss_pred             ---HHHHHHHHHHcCCEEEEEcccccCC-----CCcchhh----c------CccEEEECCCcccccCCCe--EEEE---E
Confidence               8899999999999999999986421     1111111    1      1245677999975367776  8988   5


Q ss_pred             CHHHHHHHHHhhh---ccc-Ccchhh-hhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        257 DPGVKAMLHKSIS---AML-CPTVLA-LVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       257 ~~~~~~~l~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      ++++++.+.....   .+. ...... ......   ...+            ..++....++.++..++          +
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------~~~~~~~~~~~a~~~al----------~  274 (393)
T 2huf_A          220 SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFG---RPRI------------YHHTISSTLLYGLREAI----------A  274 (393)
T ss_dssp             CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSS---SCCC------------CSCCCCHHHHHHHHHHH----------H
T ss_pred             CHHHHHHHhhcCCCCceEEEchHHHHhhhcccc---ccCC------------CCCCCCHHHHHHHHHHH----------H
Confidence            7899988875421   100 000000 000000   0000            00001111333333222          1


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC---ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        332 QFSR-EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ---GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       332 ~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                      ...+ .++++++.++++++++.+.|+++ |+++..+.   +++++|++++  .         +. +..++...+++++||
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~L~~~~gi  341 (393)
T 2huf_A          275 MACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVP--Q---------GV-DWLKAAQYAMKTYLV  341 (393)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECC--T---------TC-CHHHHHHHHHHHHCE
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcC--C---------CC-CHHHHHHHHHHhCCE
Confidence            1212 26778888999999999999998 88877653   3556665553  1         22 244555566667799


Q ss_pred             EEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e--
Q psy13922        408 CIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L--  484 (509)
Q Consensus       408 ~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~--  484 (509)
                      .+.+|..|..                                                .+          ++|+++ .  
T Consensus       342 ~v~~g~~~~~------------------------------------------------~~----------~~Ri~~~~~~  363 (393)
T 2huf_A          342 EISGGLGPTA------------------------------------------------GQ----------VFRIGLMGQN  363 (393)
T ss_dssp             ECBCCCGGGT------------------------------------------------TT----------EEEEECCGGG
T ss_pred             EEecCccccc------------------------------------------------CC----------EEEEEcccCc
Confidence            9998875432                                                23          899999 5  


Q ss_pred             cChHHHHHHHHHHHHHHHHHHh
Q psy13922        485 PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      .+++++++++++|++++++++.
T Consensus       364 ~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          364 ATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCC
Confidence            4688999999999999987654

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.97  E-value=4e-29  Score=255.62  Aligned_cols=342  Identities=13%  Similarity=0.094  Sum_probs=231.2

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCC----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTD----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--   97 (509)
                      ...|+.+++++.+.+..........|..    ..+..++++.+++++    |  +++++|++|+|+++++.++++++.  
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~l~~~   83 (382)
T 4eb5_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV----N--GGGGTVVFTSGATEANNLAIIGYAMR   83 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEcCchHHHHHHHHHHHHhh
Confidence            4578999999999987632222212432    235567777777777    4  456799999999999999999998  


Q ss_pred             --cCCCCCCCeEEEcCCCChhHHHHHH---hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         98 --EDVDGKKPGVLIPIPQYPLYSASLA---EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        98 --~~gd~~~~~Vlv~~p~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                        ++||    .|+++.|+|.++...+.   ..|++++.++.+++  +.+|++.|++.+++     ++++|++++|+||||
T Consensus        84 ~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG  152 (382)
T 4eb5_A           84 NARKGK----HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY--GEVDVSFIDQKLRD-----DTILVSVQHANNEIG  152 (382)
T ss_dssp             HGGGCC----EEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT--SCBCHHHHHHHCCT-----TEEEEECCSBCTTTC
T ss_pred             ccCCCC----EEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC--CccCHHHHHHHhcC-----CCeEEEEeccCCCcc
Confidence              8888    99999999998877665   36999999998753  57899999999876     789999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+++   +++|+++|+++|++ |+|++|...    . ...++...    +      ..+++.|+||.+ |++|  +||++
T Consensus       153 ~~~~---l~~i~~l~~~~~~~-i~D~a~~~g----~-~~~~~~~~----~------~di~~~s~sK~~-g~~g--~G~~~  210 (382)
T 4eb5_A          153 TIQP---VEEISEVLAGKAAL-HIDATASVG----Q-IEVDVEKI----G------ADMLTISSNDIY-GPKG--VGALW  210 (382)
T ss_dssp             BBCC---HHHHHHHHTTSSEE-EEECTTTBT----T-BCCCHHHH----T------CSEEEEETGGGT-CCSS--CEEEE
T ss_pred             ccCC---HHHHHHHHHHCCCE-EEEcchhcC----C-cccCcccc----C------CCEEEeehHHhc-CCCc--eEEEE
Confidence            9998   78999999999999 999999832    1 11233222    1      146677999998 7666  58876


Q ss_pred             eecCCHHHHHHHHHhh--------hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        253 VINLDPGVKAMLHKSI--------SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      +   +++.  .+....        ...+.++..                                  .+.++..++    
T Consensus       211 ~---~~~~--~l~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~al----  247 (382)
T 4eb5_A          211 I---RKEA--KLQPVILGGGQENGLRSGSENVP----------------------------------SIVGFGKAA----  247 (382)
T ss_dssp             E---ETTC--CCCCSSCSSCTGGGTSCSCCCHH----------------------------------HHHHHHHHH----
T ss_pred             E---cccc--ccCceecCCCccccccCCCccHH----------------------------------HHHHHHHHH----
Confidence            3   3321  111110        001111221                                  222222222    


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                            +...++++++++.++++++++.+.|+++|++++..+.+   +.++++.++            +. +...+ .+.
T Consensus       248 ------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~-~~~  307 (382)
T 4eb5_A          248 ------EITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------------YI-EGESI-VLS  307 (382)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------------TS-CHHHH-HHH
T ss_pred             ------HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC------------Cc-CHHHH-HHH
Confidence                  22223467888999999999999999988888776542   334554443            11 23444 445


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |.++||.+.||..|.....                          -|+     ..+...|.....+.+        ++|+
T Consensus       308 l~~~gi~v~~g~~~~~~~~--------------------------~~~-----~~~~~~g~~~~~~~~--------~iRi  348 (382)
T 4eb5_A          308 LDMAGIQASTGSACSSKTL--------------------------QPS-----HVLMACGLKHEEAHG--------TLLL  348 (382)
T ss_dssp             HHHHTCBCBCCCGGGTSSC--------------------------CCC-----HHHHHTTCCHHHHTT--------EEEE
T ss_pred             HHHCCEEEeccccccCCCC--------------------------ccc-----HHHHHcCCChhccCC--------eEEE
Confidence            5678999999987665100                          000     000000000000112        8999


Q ss_pred             Eee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        482 TIL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       482 s~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      ++.  ++++++++++++|+++++++++
T Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          349 TLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999  6899999999999999987765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.97  E-value=3.1e-29  Score=257.80  Aligned_cols=343  Identities=12%  Similarity=-0.008  Sum_probs=230.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      ++...|+.+++++.+.+..     ...|....+..++|+.+++++    |  .++++|++|+|+++++..+++++.++||
T Consensus        16 ~~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t~a~~~~~~~~~~~gd   84 (392)
T 2z9v_A           16 GPVNAYPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAM----R--LSNKPVILHGEPVLGLEAAAASLISPDD   84 (392)
T ss_dssp             SCCCCCHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHT----T--CSSCCEEESSCTHHHHHHHHHHHCCTTC
T ss_pred             CCcCCCHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHh----C--CCCCEEEEeCCchHHHHHHHHHhcCCCC
Confidence            3445678888887665543     111223345678888888887    4  3568999999999999999999988888


Q ss_pred             CCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          .|+++.|+|+++  ...++..|.+++.++.+++  +.+|++.|++.+++.   +++++|++++|+||||.+++   
T Consensus        85 ----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~---  152 (392)
T 2z9v_A           85 ----VVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKAH---PEITVVSVCHHDTPSGTINP---  152 (392)
T ss_dssp             ----CEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHHC---TTCCEEEEESEEGGGTEECC---
T ss_pred             ----EEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhcC---CCCcEEEEeccCCCCceecc---
Confidence                999999999875  3445668999999998764  368999999999641   16899999999999999998   


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|.++|+++|+++|+|++|+....     ..++.    +.+      ..+++.|+||.+.|.+|  +||++   .+++
T Consensus       153 l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~----~~~------~d~~~~s~sK~~~~~~g--~G~l~---~~~~  212 (392)
T 2z9v_A          153 IDAIGALVSAHGAYLIVDAVSSFGGM-----KTHPE----DCK------ADIYVTGPNKCLGAPPG--LTMMG---VSER  212 (392)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTBTTB-----SCCGG----GGT------CSEEEECSSSTTCCCSC--CEEEE---ECHH
T ss_pred             HHHHHHHHHHcCCeEEEEcccccCCc-----ccccc----ccc------ceEEEecCcccccCCCc--eeEEE---ECHH
Confidence            78999999999999999999974221     11211    111      14567799996634555  49998   6888


Q ss_pred             HHHHHHHhhh----cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        260 VKAMLHKSIS----AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       260 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      +++.+.....    ...+....        +..  +.       ......+......+.++..++          +.+.+
T Consensus       213 ~~~~l~~~~~g~~~~~~~~~~~--------~~~--~~-------~~~~~~~~~~~~~~~a~~~al----------~~~~~  265 (392)
T 2z9v_A          213 AWAKMKANPLAPRASMLSIVDW--------ENA--WS-------RDKPFPFTPSVSEINGLDVAL----------DLYLN  265 (392)
T ss_dssp             HHHHHHTCTTSCCSSTTCSGGG--------TTT--TS-------TTSCCSSCCCHHHHHHHHHHH----------HHHHH
T ss_pred             HHHHhhhccCCCCceeccHHHH--------Hhh--hc-------ccCCCCCCCCHHHHHHHHHHH----------HHHHh
Confidence            8888864321    00000000        000  00       000000011111222222221          22223


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhcCCCCeecc-CC---ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        336 E-KQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQ---GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       336 ~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      + ++++++.++++++++.+.|+++ |+++.. +.   .+.++|+.++  .         +. +..++...+.+++||.+.
T Consensus       266 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~l~~~L~~~~gi~v~  332 (392)
T 2z9v_A          266 EGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTP--D---------GV-DEKALRQAARARYGVVFS  332 (392)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECC--T---------TC-CHHHHHHHHHHHHCEECE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECC--C---------CC-CHHHHHHHHHhcCCEEEe
Confidence            3 6778889999999999999988 888765 32   4556665553  1         22 244545555555599999


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e--cCh
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L--PQP  487 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~--~~~  487 (509)
                      ||..+..                                                .+          ++|+++ +  +++
T Consensus       333 ~g~~~~~------------------------------------------------~~----------~lRi~~~~~~~~~  354 (392)
T 2z9v_A          333 SGRGETL------------------------------------------------GK----------LTRIGHMGPTAQP  354 (392)
T ss_dssp             ECCGGGT------------------------------------------------TT----------EEEEECCGGGCSH
T ss_pred             cCCCCCC------------------------------------------------CC----------eEEEeCcccccCH
Confidence            9874322                                                22          899995 4  799


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy13922        488 EKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       488 ~~i~~~~~~l~~~~~~~~  505 (509)
                      +++++++++|+++++++.
T Consensus       355 ~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          355 IYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            999999999999987654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.97  E-value=2.6e-29  Score=258.65  Aligned_cols=346  Identities=11%  Similarity=0.095  Sum_probs=232.5

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCC--cchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHHHHhhcC
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDS--PGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      +..+|+.+++++.+.+..       +|.+.  ....++|++++++++      .+++ +|++|+|+++++..+++++.++
T Consensus        26 p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~~~   92 (396)
T 2ch1_A           26 PSNCSKRVLTAMTNTVLS-------NFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLLEE   92 (396)
T ss_dssp             SCCCCHHHHHHTTSCCCC-------TTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCT
T ss_pred             CCCCCHHHHHHhcccccc-------CCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhcCC
Confidence            334577777766443321       24332  236889999999983      4566 8999999999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhHH--HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ||    .|+++.|+|.++.  ..++..|++++.++.++  ++.+|++.|++.+++.    ++++|++++|+||||.+++ 
T Consensus        93 gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~-  161 (396)
T 2ch1_A           93 GD----RVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELH----QPKCLFLTHGDSSSGLLQP-  161 (396)
T ss_dssp             TC----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC-
T ss_pred             CC----eEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhC----CCCEEEEECCCCCCceecC-
Confidence            88    9999999999984  47788899999999875  4579999999999864    6899999999999999999 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|+++|+++|+++|+||+|....     ...++..    .     +.+++ +.|++|.+.|.  .++|+++   .+
T Consensus       162 --~~~i~~l~~~~~~~li~Dea~~~g~-----~~~~~~~----~-----~~d~~-~~s~~K~~~~~--~g~g~~~---~~  219 (396)
T 2ch1_A          162 --LEGVGQICHQHDCLLIVDAVASLCG-----VPFYMDK----W-----EIDAV-YTGAQKVLGAP--PGITPIS---IS  219 (396)
T ss_dssp             --CTTHHHHHHHTTCEEEEECTTTBTT-----BCCCTTT----T-----TCCEE-ECCCC-CCCCC--SSCEEEE---EC
T ss_pred             --HHHHHHHHHHcCCEEEEEccccccC-----Cccchhh----c-----CcCEE-EEcCCccccCC--CCeEEEE---EC
Confidence              8889999999999999999998321     1111111    1     11244 56899987433  4568887   57


Q ss_pred             HHHHHHHHHhhh---c-ccCcchhh-hhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        258 PGVKAMLHKSIS---A-MLCPTVLA-LVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       258 ~~~~~~l~~~~~---~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      +++++.+.....   . ..+..... .......   ..+            ..++....++.++..+++         ..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~a~~~al~---------~~  275 (396)
T 2ch1_A          220 PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE---PKR------------YHHTVASNLIFALREALA---------QI  275 (396)
T ss_dssp             HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSS---CCC------------CCCCCCHHHHHHHHHHHH---------HH
T ss_pred             HHHHHhhhhccCcccceEechHHHHHhhhhhcc---cCC------------CCCCCcHHHHHHHHHHHH---------HH
Confidence            788887754211   0 00000000 0000000   000            000111113333333322         10


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCce----eEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeE
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGA----MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGIC  408 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~  408 (509)
                      ..++++++++.++++++++.+.|+++ |+++..+.++    .++|+.++  .         +. +..++...+++++||.
T Consensus       276 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~L~~~~gi~  342 (396)
T 2ch1_A          276 AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIP--K---------GV-DWWKVSQYAMNNFSLE  342 (396)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECC--T---------TC-CHHHHHHHHHHHHCBC
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcC--C---------CC-CHHHHHHHHHHhCCEE
Confidence            11236788889999999999999998 8888776653    35665553  1         22 3445556666667999


Q ss_pred             EecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e--c
Q psy13922        409 IVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L--P  485 (509)
Q Consensus       409 v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~--~  485 (509)
                      +++|..+..                                                .+          ++|+++ .  .
T Consensus       343 v~~g~~~~~------------------------------------------------~~----------~iRi~~~~~~~  364 (396)
T 2ch1_A          343 VQGGLGPTF------------------------------------------------GK----------AWRVGIMGECS  364 (396)
T ss_dssp             CBCCCGGGT------------------------------------------------TT----------EEEEECCGGGC
T ss_pred             EecCccccC------------------------------------------------CC----------EEEEECCCCcC
Confidence            998764322                                                23          899999 3  4


Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcC
Q psy13922        486 QPEKLKAMLEKFREFHEEFLAKYK  509 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~~~~~~~  509 (509)
                      +++++++++++|+++++++.+.|+
T Consensus       365 ~~e~i~~~~~~l~~~l~~~~~~~~  388 (396)
T 2ch1_A          365 TVQKIQFYLYGFKESLKATHPDYI  388 (396)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHhCccEE
Confidence            889999999999999998877663

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=9.3e-29  Score=255.39  Aligned_cols=328  Identities=12%  Similarity=0.053  Sum_probs=231.7

Q ss_pred             CHHHHHHHHHHHhcccCC---CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--cCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQ---SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--EDVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~---~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd  101 (509)
                      +|.+++++.+.+......   ....|+...+..++|++++++++       .+++|++|+|++ ++..++..+.  .+||
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-------~~~~i~~~sG~~-a~~~~~~~l~~~~~gd  133 (401)
T 2bwn_A           62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ-------KEAALVFSSAYN-ANDATLSTLRVLFPGL  133 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT-------CSEEEEESCHHH-HHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC-------CCcEEEECCcHH-HHHHHHHHHhcCCCCC
Confidence            578999999998863221   12236677788999999999983       247888888876 7767766654  4777


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+++.|+|.++...++..|++++.++.+       |++.|++.++.... .++++|++++|+||||.+++   ++
T Consensus       134 ----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~-~~~~~v~~~~~~nptG~~~~---l~  198 (401)
T 2bwn_A          134 ----IIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDP-AAPKLIAFESVYSMDGDFGP---IK  198 (401)
T ss_dssp             ----EEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCT-TSCEEEEEESBCTTTCCBCC---HH
T ss_pred             ----EEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhcc-CCceEEEEecCcCCCCCcCC---HH
Confidence                99999999999999999999999998864       78999998874210 16899999999999999998   89


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|+++|+++|+++|+||+|....++..  ..++.. ..++.    ....++++|+||.+ |++|   ||++   .+++++
T Consensus       199 ~i~~l~~~~~~~li~Dea~~~g~~~~~--g~~~~~-~~~~~----~~~~i~~~s~sK~~-~~~G---G~~~---~~~~~~  264 (401)
T 2bwn_A          199 EICDIAEEFGALTYIDEVHAVGMYGPR--GAGVAE-RDGLM----HRIDIFNGTLAKAY-GVFG---GYIA---ASARMV  264 (401)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSSTT--SCCHHH-HHTCG----GGCSEEEEESSSTT-CSCC---EEEE---ECHHHH
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCC--Cceeee-ccCcc----ccCcEEEeechhhc-cCCC---CEEe---cCHHHH
Confidence            999999999999999999996554321  122321 11110    11257788999999 6777   9998   688898


Q ss_pred             HHHHHhhhc---ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISA---MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......   ..+.+..                                  .++++..+++        +... ..++
T Consensus       265 ~~l~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~--------~~~~-~~~~  301 (401)
T 2bwn_A          265 DAVRSYAPGFIFSTSLPPA----------------------------------IAAGAQASIA--------FLKT-AEGQ  301 (401)
T ss_dssp             HHHHHHCHHHHTSBCCCHH----------------------------------HHHHHHHHHH--------HHTS-HHHH
T ss_pred             HHHHHhCcCceecCCCCHH----------------------------------HHHHHHHHHH--------HHHh-cccH
Confidence            887754321   1112223                                  2222222211        0000 0136


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      ++++.++++++++.+.|+++ |+++.++.++ ++|+.+....            +...+...+++++||.+.|+..|+..
T Consensus       302 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~L~~~~gi~v~~~~~~~~~  367 (401)
T 2bwn_A          302 KLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPVVIGDPV------------HTKAVSDMLLSDYGVYVQPINFPTVP  367 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEEECCCHH------------HHHHHHHHHHHHHCEECCEECTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEEEeCChH------------HHHHHHHHHHhcCCEEEeecCCCCCC
Confidence            77888899999999999988 8888777776 5666554111            13344455556889999998766541


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+.+        ++|+++.  ++++++++++++
T Consensus       368 -----------------------------------------------~~~~--------~iRis~~~~~t~~~i~~~~~~  392 (401)
T 2bwn_A          368 -----------------------------------------------RGTE--------RLRFTPSPVHDLKQIDGLVHA  392 (401)
T ss_dssp             -----------------------------------------------TTCC--------EEEECCCTTSCHHHHHHHHHH
T ss_pred             -----------------------------------------------CCCc--------eEEEEeeCCCCHHHHHHHHHH
Confidence                                                           1223        8999998  799999999999


Q ss_pred             HHHHHHH
Q psy13922        497 FREFHEE  503 (509)
Q Consensus       497 l~~~~~~  503 (509)
                      |++++++
T Consensus       393 l~~~~~~  399 (401)
T 2bwn_A          393 MDLLWAR  399 (401)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            9988764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.97  E-value=3.3e-29  Score=259.76  Aligned_cols=203  Identities=15%  Similarity=0.136  Sum_probs=158.6

Q ss_pred             CCCCCCC--CHHHHHHHHHHHhccc-CCCcccCCCCcchH---HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHH
Q psy13922         20 LFDDPRF--PDDVKQRAQAVLDGCR-GQSVGSYTDSPGIE---IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL   93 (509)
Q Consensus        20 ~~~~~~~--p~~v~~a~~~~l~~~~-~~~~~~Y~~~~g~~---~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~   93 (509)
                      -+++|++  |+.+.+++.+.++... ......|+. .|.+   ++++++++++    |.    +++++++|+++++..++
T Consensus        24 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~----~~~i~~~~g~~ai~~~~   94 (404)
T 1e5e_A           24 AAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KT----EACVATSSGMGAIAATV   94 (404)
T ss_dssp             CSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHH
T ss_pred             CcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CC----CcEEEeCChHHHHHHHH
Confidence            3477777  3455555555544111 122233776 4545   8999999988    32    37888888899999999


Q ss_pred             HHhhcCCCCCCCeEEEcCCCChhHHH----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         94 KLLIEDVDGKKPGVLIPIPQYPLYSA----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        94 ~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      ++++++||    .|+++.|+|.++..    .++..|++++.++.+       |++.|++.+++     ++++|++++|+|
T Consensus        95 ~~l~~~gd----~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~-----~t~~v~l~~p~N  158 (404)
T 1e5e_A           95 LTILKAGD----HLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKP-----NTKIVYFETPAN  158 (404)
T ss_dssp             HHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCT-----TEEEEEEESSCT
T ss_pred             HHHhCCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCC-----CCcEEEEECCCC
Confidence            99999988    99999999999888    678899999999864       67899988876     799999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQVLTKENIQDIIKFAHR-EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~-~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      |||.+++   +++|+++|++ +|+++|+|++|..+.+..     ++ .    .+      ..++++|+||.+ |.+|+|+
T Consensus       159 ptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~-----~~-~----~~------~di~~~S~sK~~-~~~g~ri  218 (404)
T 1e5e_A          159 PTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN-----PV-D----FG------VDVVVHSATKYI-NGHTDVV  218 (404)
T ss_dssp             TTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC-----GG-G----GT------CSEEEEETTTTT-TCSSCCC
T ss_pred             CCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC-----cc-c----cC------CEEEEEcCcccc-CCCCCCe
Confidence            9999997   8999999999 999999999999876531     11 1    11      267788999999 6899998


Q ss_pred             -EEEeeecCCHHHHH-HHHHhhhc
Q psy13922        249 -GYSEVINLDPGVKA-MLHKSISA  270 (509)
Q Consensus       249 -G~v~~~~~~~~~~~-~l~~~~~~  270 (509)
                       ||++   .++++++ .+......
T Consensus       219 ~G~~~---~~~~~~~~~l~~~~~~  239 (404)
T 1e5e_A          219 AGLIC---GKADLLQQIRMVGIKD  239 (404)
T ss_dssp             CEEEE---ECHHHHHHHHHTCCCC
T ss_pred             EEEEE---ECHHHHHHHHHHHHHh
Confidence             9998   6888877 77766553

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=3.4e-30  Score=264.39  Aligned_cols=343  Identities=14%  Similarity=0.117  Sum_probs=229.4

Q ss_pred             CCHHHHHHHHHHHhccc---CCCcccCCC-CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         26 FPDDVKQRAQAVLDGCR---GQSVGSYTD-SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~---~~~~~~Y~~-~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      .|+.+++++.+.+....   ......|+. ..+..++|+++++++    |  +++++|++|+|+++++..+++++ .++|
T Consensus        28 ~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~~~~~~g  101 (390)
T 1elu_A           28 LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTGCDIVLWGLDWHQG  101 (390)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHHHHHHHHHSCCCTT
T ss_pred             CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----C--CCHHHEEEeCChHHHHHHHHhCCCCCCC
Confidence            47789999998887621   011113654 467789999999998    3  56779999999999999999999 7888


Q ss_pred             CCCCCeEEEcCCCChhHHHH----HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922        101 DGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      |    +|+++.|+|.++...    ++..|++++.++.++..++.+|++.|++.+++     ++++|++++|+||||.+++
T Consensus       102 d----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~  172 (390)
T 1elu_A          102 D----EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-----KTRLVILSHLLWNTGQVLP  172 (390)
T ss_dssp             C----EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-----TEEEEEEESBCTTTCCBCC
T ss_pred             C----EEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-----CceEEEEeccccCCceecC
Confidence            8    999999999997654    46679999999987434578999999998876     7999999999999999999


Q ss_pred             HHHHHHHHHHHH----HCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        177 KENIQDIIKFAH----REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       177 ~~~l~~l~~ia~----~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                         +++|.++|+    ++|+++|+|++|.....     ...+.    +      ....+++.|+||.+.  +|.++||++
T Consensus       173 ---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-----~~~~~----~------~~~d~~~~s~~K~~~--~~~g~G~~~  232 (390)
T 1elu_A          173 ---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFS----R------LEVDYYAFTGHKWFA--GPAGVGGLY  232 (390)
T ss_dssp             ---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTT----T------SCCSEEEEESSSTTC--CCTTCEEEE
T ss_pred             ---HHHHHHHHhhhhhhcCcEEEEEcccccCCc-----CCChh----h------cCCCEEEcccccccc--CCCceEEEE
Confidence               889999999    99999999999985321     11110    1      112466789999542  556789998


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                         .++++++.+......+......        +....|.   .......+..+......+.++..+++        +-.
T Consensus       233 ---~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~al~--------~l~  290 (390)
T 1elu_A          233 ---IHGDCLGEINPTYVGWRSITYG--------AKGEPTG---WAEGGKRFEVATSAYPQYAGLLAALQ--------LHQ  290 (390)
T ss_dssp             ---ECTTTGGGCCCCSCCTTTEEEC--------TTSCEEE---ECSGGGGGCCSCCCHHHHHHHHHHHH--------HHH
T ss_pred             ---ECHHhHhhcCCccccCCccccc--------ccCcccc---cccchHhhCCCCCCHHHHHHHHHHHH--------HHH
Confidence               5677766654321111000000        0000000   00000000001111112333322221        000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec---cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIEGMSCN---PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      ...+++++++.++++++.+.+.|++++|+++.   ++.++++.| +++  .         +. +..++. +.|.++||.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~--~---------~~-~~~~~~-~~l~~~gi~v  356 (390)
T 1elu_A          291 RQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVD--S---------PL-GHRAIV-QKLEEQRIYL  356 (390)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EEC--S---------SS-CHHHHH-HHHHHTTEEC
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcC--C---------CC-CHHHHH-HHHHHCCEEE
Confidence            11137788899999999999999998888877   346777766 553  1         21 234444 4446789999


Q ss_pred             ecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cCh
Q psy13922        410 VPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQP  487 (509)
Q Consensus       410 ~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~  487 (509)
                      +||.   .                                                ++          ++|+++.  .++
T Consensus       357 ~~~~---~------------------------------------------------~~----------~iRis~~~~~~~  375 (390)
T 1elu_A          357 RTIA---D------------------------------------------------PD----------CIRACCHYITDE  375 (390)
T ss_dssp             EEET---T------------------------------------------------TT----------EEEEECCTTCCH
T ss_pred             EecC---C------------------------------------------------CC----------eEEEecccCCCH
Confidence            9865   1                                                22          8999985  899


Q ss_pred             HHHHHHHHHHHHH
Q psy13922        488 EKLKAMLEKFREF  500 (509)
Q Consensus       488 ~~i~~~~~~l~~~  500 (509)
                      +++++++++|+++
T Consensus       376 ~~i~~~~~~l~~~  388 (390)
T 1elu_A          376 EEINHLLARLADF  388 (390)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.97  E-value=4.5e-28  Score=248.67  Aligned_cols=320  Identities=10%  Similarity=0.060  Sum_probs=227.9

Q ss_pred             CCHHHHHHHHHHHhcccC-CCcccC--CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRG-QSVGSY--TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG  102 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~-~~~~~Y--~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~  102 (509)
                      .|+.+.+++.+.+..... .....|  +...+..++|+++++++    |  ++ +.+++++| ++++..+++++.++|| 
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g--~~-~~i~~~sG-t~a~~~~~~~~~~~gd-  124 (384)
T 1bs0_A           54 HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G--YS-RALLFISG-FAANQAVIAAMMAKED-  124 (384)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T--CS-EEEEESCH-HHHHHHHHHHHCCTTC-
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----C--CC-cEEEeCCc-HHHHHHHHHHhCCCCc-
Confidence            367899999998876321 111223  55678899999999998    3  22 44555555 8999999999998888 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                         .|+++.|+|..+...++..|.+++.+|.       .|++.|++.+++..  .++++|++++|+||||.+++   +++
T Consensus       125 ---~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~--~~~~~v~~~~~~nptG~~~~---l~~  189 (384)
T 1bs0_A          125 ---RIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPC--PGQQMVVTEGVFSMDGDSAP---LAE  189 (384)
T ss_dssp             ---EEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCC--SSCEEEEEESBCTTTCCBCC---HHH
T ss_pred             ---EEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcC--CCCeEEEEeCCCCCCCCccC---HHH
Confidence               9999999999999999999999999873       47899999987621  12678888999999999998   889


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |+++|+++|+++|+||+|+.+.+...  ..++...   .+.   .. .++++|+||.+ |++|   ||++   .++++++
T Consensus       190 i~~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~---~~~---~~-di~~~s~sK~~-~~~G---G~~~---~~~~~~~  253 (384)
T 1bs0_A          190 IQQVTQQHNGWLMVDDAHGTGVIGEQ--GRGSCWL---QKV---KP-ELLVVTFGKGF-GVSG---AAVL---CSSTVAD  253 (384)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSSGG--GCCHHHH---TTC---CC-SEEEEESSSTT-SSCC---EEEE---ECHHHHH
T ss_pred             HHHHHHHcCcEEEEECCcccceecCC--CCchHHh---cCC---CC-cEEEeeccchh-hccC---cEEE---eCHHHHH
Confidence            99999999999999999988654311  1122221   111   12 37788999999 6666   9998   6899999


Q ss_pred             HHHHhhhcc---cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH--HH
Q psy13922        263 MLHKSISAM---LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR--EK  337 (509)
Q Consensus       263 ~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~--~~  337 (509)
                      .+......+   .+.+.+                                  .++++..+++           ..+  +.
T Consensus       254 ~l~~~~~~~~~~~~~~~~----------------------------------~~~~~~~al~-----------~~~~~~~  288 (384)
T 1bs0_A          254 YLLQFARHLIYSTSMPPA----------------------------------QAQALRASLA-----------VIRSDEG  288 (384)
T ss_dssp             HHHHHCHHHHSSBCCCHH----------------------------------HHHHHHHHHH-----------HHHSHHH
T ss_pred             HHHHhchhhhcCCCCCHH----------------------------------HHHHHHHHHH-----------HHhcccc
Confidence            887643211   234444                                  3333332221           222  46


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|+++ ++++.++ ++.++|++++...            +..++... |.++||.+.||..|+.
T Consensus       289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~------------~~~~l~~~-l~~~gi~v~~~~~~~~  353 (384)
T 1bs0_A          289 DARREKLAALITRFRAGVQDL-PFTLADS-CSAIQPLIVGDNS------------RALQLAEK-LRQQGCWVTAIRPPTV  353 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS-SCEECSC-CSSBCCEEEESHH------------HHHHHHHH-HHHTTEECCEECTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCcccCC-CCCEEEEEeCCHH------------HHHHHHHH-HHHCCcEEEeecCCCC
Confidence            678889999999999999998 7877654 4455566553111            13344444 4456999999887654


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLE  495 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~  495 (509)
                      .                                               .+.+        ++|+++.  +++++++++++
T Consensus       354 ~-----------------------------------------------~~~~--------~~Ri~~~~~~~~~~i~~~~~  378 (384)
T 1bs0_A          354 P-----------------------------------------------AGTA--------RLRLTLTAAHEMQDIDRLLE  378 (384)
T ss_dssp             C-----------------------------------------------TTCE--------EECCBCCTTCCHHHHHHHHH
T ss_pred             C-----------------------------------------------CCCc--------eEEEEEcCCCCHHHHHHHHH
Confidence            1                                               1222        8999998  48999999999


Q ss_pred             HHHHH
Q psy13922        496 KFREF  500 (509)
Q Consensus       496 ~l~~~  500 (509)
                      +|+++
T Consensus       379 ~l~~~  383 (384)
T 1bs0_A          379 VLHGN  383 (384)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99864

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=9.5e-29  Score=255.48  Aligned_cols=322  Identities=13%  Similarity=0.080  Sum_probs=214.2

Q ss_pred             HHHHHHHHhhcC-CCCC---CCCCCCHHHHHHHHHHHhcccCCCcccCC----CCcchHHHHHHHHHHHhhhcCCCCCCC
Q psy13922          6 SLSLQVLALVSL-PQLF---DDPRFPDDVKQRAQAVLDGCRGQSVGSYT----DSPGIEIIRRHVAQYISRRDGQPADWQ   77 (509)
Q Consensus         6 ~~~~~~~~~~~~-~~~~---~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~----~~~g~~~lr~~va~~l~~~~g~~~~~~   77 (509)
                      ..+|+.+..... .-.+   ..+..|+.+++++.+.+..........|+    ...+..++++.+++++    |  ++++
T Consensus        14 ~~~r~~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~   87 (406)
T 3cai_A           14 ARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----N--ADPG   87 (406)
T ss_dssp             HHHHHTCTTTTSSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----T--CCGG
T ss_pred             HHHHHhhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCC
Confidence            345555544432 1223   33457899999999998863211112243    2456678888888888    3  4568


Q ss_pred             cEEEeCCHHHHHHHHHHHh---hcCCCCCCCeEEEcCCCChhHHHHHHh----cCCEEEEEecCCCCCCCCCHHHHHHHH
Q psy13922         78 DVILSAGASDGIKSVLKLL---IEDVDGKKPGVLIPIPQYPLYSASLAE----FNMEQIGYYLDESKQWGLPISELERSI  150 (509)
Q Consensus        78 ~i~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~L~~~i  150 (509)
                      +|++|+|+++++..+++++   .++||    .|+++.|+|.++...+..    .|++++.++.+++ ++.+|++.|++.+
T Consensus        88 ~v~~~~g~t~al~~~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l  162 (406)
T 3cai_A           88 GVVLGADRAVLLSLLAEASSSRAGLGY----EVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLI  162 (406)
T ss_dssp             GEEEESCHHHHHHHHHHHTGGGGBTTC----EEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHC
T ss_pred             eEEEeCChHHHHHHHHHHHhhccCCCC----EEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHh
Confidence            9999999999999999988   67787    999999999987655443    6999999998733 3578999999998


Q ss_pred             HhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCcee
Q psy13922        151 TEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMEL  230 (509)
Q Consensus       151 ~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  230 (509)
                      ++     ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|....     ...++..+    +.      .
T Consensus       163 ~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~-----~~~~~~~~----~~------d  219 (406)
T 3cai_A          163 SK-----STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY-----RLLDIRET----DA------D  219 (406)
T ss_dssp             CT-----TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT-----CCCCHHHH----CC------S
T ss_pred             CC-----CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC-----CCCCchhc----CC------C
Confidence            76     7999999999999999998   8899999999999999999997521     11233222    11      4


Q ss_pred             EEEEecccccCCCCCCeeE-EEeeecCCHHHHHHHHHhhhc----------ccCcchhhhhccccccCCCCCchhHHHHH
Q psy13922        231 ASFMSCSKGYMGECGLRGG-YSEVINLDPGVKAMLHKSISA----------MLCPTVLALVSLPQLFDDPRFPDDVKQRA  299 (509)
Q Consensus       231 i~i~S~SK~~~G~~Glr~G-~v~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (509)
                      +++.|+||.+ | ++  +| |++   .++++++.+......          .+.++..+.                  .+
T Consensus       220 ~~~~s~~K~~-g-~~--~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~------------------~a  274 (406)
T 3cai_A          220 VVTVNAHAWG-G-PP--IGAMVF---RDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLL------------------AG  274 (406)
T ss_dssp             EEEEEGGGGT-S-CS--CEEEEE---SCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHH------------------HH
T ss_pred             EEEeehhhhc-C-CC--cCeEEE---EehHHHhhcCCcccCCCCCccccccCCCccHHHH------------------HH
Confidence            5577999988 6 55  88 887   688887766543210          011111100                  00


Q ss_pred             HHhhhcccCcccccchhhcccCCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC---ceeEEeec
Q psy13922        300 QAVLDGCRGQSVGQTVMDCVVNPPQPGEPS-YEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ---GAMYAFPQ  375 (509)
Q Consensus       300 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~  375 (509)
                                  ..+++....+......+. -.++.++++++++.++++++++.+.|+++|++++..+.   ++ ++++.
T Consensus       275 ------------~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~  341 (406)
T 3cai_A          275 ------------VVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFA  341 (406)
T ss_dssp             ------------HHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEE
T ss_pred             ------------HHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEE
Confidence                        111222111100000000 01122247888899999999999999998888877653   45 45654


Q ss_pred             CCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        376 MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       376 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      +.            +. +..++ ...|.++||.+.+|.
T Consensus       342 ~~------------~~-~~~~~-~~~L~~~gi~v~~g~  365 (406)
T 3cai_A          342 VH------------KV-PADRV-VQRLADNGILAIANT  365 (406)
T ss_dssp             ET------------TB-CHHHH-HHHHHHTTEECEECC
T ss_pred             EC------------Cc-CHHHH-HHHHHHCCcEEecCC
Confidence            43            11 23343 455567899999887

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.97  E-value=4.7e-29  Score=255.15  Aligned_cols=323  Identities=11%  Similarity=0.089  Sum_probs=230.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      ++..+|+.+++++.+.+..   . .. +.......++++.+++++    |.+.+.++|++|+|+++++. ++..+.++||
T Consensus         9 gp~~~~~~v~~a~~~~~~~---~-~~-~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd   78 (384)
T 3zrp_A            9 GPTTIKEDVLVAGLENNVG---F-TS-KEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAME-SVTSLLKPND   78 (384)
T ss_dssp             SCSCCCHHHHHHTTCCSCC---T-TS-HHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHH-HGGGGCCTTC
T ss_pred             CCCCCCHHHHHHhhccccc---c-cc-HHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHH-HHHhhcCCCC
Confidence            4556788888887655433   1 11 122334566677777766    53333388999999999999 9999998888


Q ss_pred             CCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          .|+++.|+|++  +...++..|.+++.++.+++  +.+|++.|++.+++.    ++++|++++|+||||.+++   
T Consensus        79 ----~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~---  145 (384)
T 3zrp_A           79 ----KILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG--DYVKPGEVEEEVRKS----EYKLVALTHVETSTGVREP---  145 (384)
T ss_dssp             ----EEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT--CCCCHHHHHHHHHHS----CEEEEEEESEETTTTEECC---
T ss_pred             ----EEEEecCCcchHHHHHHHHHcCCcEEEecCCCC--CCCCHHHHHHHHHhC----CCcEEEEeCCCCCCceECc---
Confidence                99999999965  66667888999999998764  478999999999874    6899999999999999998   


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|.++|++||+++|+|++|......     .++..          ....+++.|+||.++  ++.++||++   .+++
T Consensus       146 l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~----------~~~d~~~~s~~K~~~--~~~g~g~~~---~~~~  205 (384)
T 3zrp_A          146 VKDVINKIRKYVELIVVDGVSSVGAEE-----VKAEE----------WNVDVYLTASQKALG--SAAGLGLLL---LSPK  205 (384)
T ss_dssp             HHHHHHHHGGGEEEEEEECTTTTTTSC-----CCTTT----------TTCSEEEEETTSTTC--CCSSEEEEE---ECHH
T ss_pred             HHHHHHHHHhcCCEEEEECcccccCcc-----ccccc----------cCCCEEEecCccccc--CCCceEEEE---ECHH
Confidence            889999999999999999998754321     11111          012466779999884  344589998   6888


Q ss_pred             HHHHH-H------------Hhhhc-----------ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        260 VKAML-H------------KSISA-----------MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       260 ~~~~l-~------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      +++.+ .            .....           ++.++..                                  ...+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------------------------------~~~a  251 (384)
T 3zrp_A          206 ALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVH----------------------------------VILQ  251 (384)
T ss_dssp             HHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHH----------------------------------HHHH
T ss_pred             HHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHH----------------------------------HHHH
Confidence            88877 2            11110           0112222                                  2333


Q ss_pred             hhcccCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeeccCC----ceeEEeecCCCCHHHHHHHhhcC
Q psy13922        316 MDCVVNPPQPGEPSYEQFSRE-KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ----GAMYAFPQMKLPAKAIAKAKAEG  390 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~g  390 (509)
                      +..++          ....++ ++++++.++++++++.+.|+++ ++++..+.    ++.++|+.++            +
T Consensus       252 ~~~al----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------------~  308 (384)
T 3zrp_A          252 LAEAF----------RLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILK------------V  308 (384)
T ss_dssp             HHHHH----------HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECS------------S
T ss_pred             HHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECC------------C
Confidence            32222          112222 6788899999999999999998 88887666    5667776664            2


Q ss_pred             CCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCC
Q psy13922        391 KCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGF  470 (509)
Q Consensus       391 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (509)
                       .+..++. ..|.++||.+.+|..+.                                                 .  + 
T Consensus       309 -~~~~~~~-~~l~~~gi~v~~g~~~~-------------------------------------------------~--~-  334 (384)
T 3zrp_A          309 -ADPQKVL-AGTVNEGVEFAPGVHPA-------------------------------------------------F--K-  334 (384)
T ss_dssp             -SCHHHHH-HHHHTTTCCCEECCCTT-------------------------------------------------C--C-
T ss_pred             -CCHHHHH-HHHHHCCEEEecCCCCC-------------------------------------------------c--C-
Confidence             1344444 44555699999876321                                                 1  2 


Q ss_pred             CCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHHH
Q psy13922        471 GQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       471 ~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~  505 (509)
                             ++|+++.  ++++++++++++|+++++++.
T Consensus       335 -------~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          335 -------YFRIGHMGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             -------EEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             -------EEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence                   8999988  799999999999999998764

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.97  E-value=4.6e-29  Score=252.01  Aligned_cols=321  Identities=13%  Similarity=0.080  Sum_probs=226.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCC-CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYT-DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~-~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g  100 (509)
                      |+...|+.+++++.+.+..      ..|+ ...+..++|+.+++++    |.+.++++|++|+|+++++..+++.+.+  
T Consensus         7 gp~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~--   74 (353)
T 2yrr_A            7 GPTPIPERVQKALLRPMRG------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR--   74 (353)
T ss_dssp             SSCCCCHHHHGGGGSCCCC------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--
T ss_pred             CCCCCCHHHHHHHhccccc------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--
Confidence            3445678888887666543      1132 2345677888888887    5444567899999999999999999876  


Q ss_pred             CCCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        101 DGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      |    +|+++.|.|+++  ...++..|++++.++.+++  +.+|++.|++.+++.    ++++|++++|+||||.+++  
T Consensus        75 d----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~--  142 (353)
T 2yrr_A           75 G----PVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG--EPVDPEAVARALKRR----RYRMVALVHGETSTGVLNP--  142 (353)
T ss_dssp             C----CEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT--SCCCHHHHHHHHHHS----CCSEEEEESEETTTTEECC--
T ss_pred             C----cEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHHhC----CCCEEEEEccCCCcceecC--
Confidence            6    899999999875  4556778999999998754  578999999999863    5899999999999999998  


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                       +++|.++|+++|+++|+|++|....     ...++..+    +     . .+++.|++|.+.|.+|  +||++   .++
T Consensus       143 -~~~i~~l~~~~~~~li~D~a~~~~~-----~~~~~~~~----~-----~-d~~~~s~~K~~~~~~g--~G~~~---~~~  201 (353)
T 2yrr_A          143 -AEAIGALAKEAGALFFLDAVTTLGM-----LPFSMRAM----G-----V-DYAFTGSQKCLSAPPG--LAPIA---ASL  201 (353)
T ss_dssp             -HHHHHHHHHHHTCEEEEECTTTTTT-----SCCCHHHH----T-----C-SEEECCTTSTTCCCSS--CEEEE---ECH
T ss_pred             -HHHHHHHHHHcCCeEEEEcCccccc-----cccccccc----C-----c-eEEEecCcccccCCCc--eEEEE---ECH
Confidence             7899999999999999999996421     12233322    1     1 2445689996635556  69998   688


Q ss_pred             HHHHHHHH-------------hh--h-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCC
Q psy13922        259 GVKAMLHK-------------SI--S-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP  322 (509)
Q Consensus       259 ~~~~~l~~-------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~  322 (509)
                      ++++.+..             ..  . ..++++..                                  .+.++..++  
T Consensus       202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al--  245 (353)
T 2yrr_A          202 EARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVL----------------------------------LHYALLEAL--  245 (353)
T ss_dssp             HHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHH----------------------------------HHHHHHHHH--
T ss_pred             HHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHH----------------------------------HHHHHHHHH--
Confidence            88776631             00  0 01112222                                  233333222  


Q ss_pred             CCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeeccCC--ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH
Q psy13922        323 PQPGEPSYEQFSRE-KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ--GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF  399 (509)
Q Consensus       323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  399 (509)
                              +.+.++ ++++++.++++++++.+.|+++ |+++..+.  +++++|++++  .         +. +..++. 
T Consensus       246 --------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~-  303 (353)
T 2yrr_A          246 --------DLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPP--E---------GV-DADRLV-  303 (353)
T ss_dssp             --------HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECC--T---------TC-CHHHHH-
T ss_pred             --------HHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECC--C---------CC-CHHHHH-
Confidence                    222222 6778889999999999999988 88877654  6667776653  1         22 234444 


Q ss_pred             HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeE
Q psy13922        400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHF  479 (509)
Q Consensus       400 ~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      +.|.++||.+.||..|..                                                .+          ++
T Consensus       304 ~~l~~~gi~v~~g~~~~~------------------------------------------------~~----------~i  325 (353)
T 2yrr_A          304 RALYAEGVAVAGGIGPTR------------------------------------------------GQ----------VL  325 (353)
T ss_dssp             HHHHHTTEECEECCGGGT------------------------------------------------TT----------CE
T ss_pred             HHHHHCCEEEeCCccccC------------------------------------------------CC----------eE
Confidence            445556999999875433                                                23          89


Q ss_pred             EEEee--cChHHHH-HHHHHHHHHHHH
Q psy13922        480 RTTIL--PQPEKLK-AMLEKFREFHEE  503 (509)
Q Consensus       480 Rls~~--~~~~~i~-~~~~~l~~~~~~  503 (509)
                      |+++.  .++++++ +++++|++++++
T Consensus       326 Ri~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          326 RLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             EEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             EEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            99984  7888898 999999988753

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=1.7e-28  Score=251.72  Aligned_cols=352  Identities=11%  Similarity=0.078  Sum_probs=232.0

Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         18 PQLFDDP--RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        18 ~~~~~~~--~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      |..++..  ..++.+.+++.+.+......    |....+..++++++++++.+.+|  .++++|++|+|+++++..++++
T Consensus        32 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~  105 (397)
T 3f9t_A           32 GNIFGSMCSNVLPITRKIVDIFLETNLGD----PGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRC  105 (397)
T ss_dssp             TCBCSCSCCCCCTHHHHHHHHHTTCCTTS----GGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHH
T ss_pred             CCeEEEecCCCcHHHHHHHHHHHhhcCCC----cccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHH
Confidence            3445433  34678999998888762211    22223557777777777777766  4678999999999999999999


Q ss_pred             hhcC---------CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922         96 LIED---------VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus        96 l~~~---------gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                      +..+         +.++++.|+++.|+|.++...++..|.+++.++.+++  +.+|++.|++.+++.    ++++|++++
T Consensus       106 ~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~----~~~~v~~~~  179 (397)
T 3f9t_A          106 IKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED--YTIDEKFVKDAVEDY----DVDGIIGIA  179 (397)
T ss_dssp             HHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT--SSBCHHHHHHHHHHS----CCCEEEEEB
T ss_pred             HHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC--CcCCHHHHHHHHhhc----CCeEEEEEC
Confidence            9876         1112239999999999999999999999999998754  588999999999874    589999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC
Q psy13922        167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL  246 (509)
Q Consensus       167 p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl  246 (509)
                      |+||||.+.+   +++|.++|++||+++|+||+|..+.+.......++..+........ + ..+++.|++|.+ + +|.
T Consensus       180 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~K~~-~-~~~  252 (397)
T 3f9t_A          180 GTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-G-VDSITIDPHKMG-H-CPI  252 (397)
T ss_dssp             SCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-T-CSEEECCTTTTT-C-CCS
T ss_pred             CCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-c-CCeEEEcccccc-C-CCC
Confidence            9999999977   8889999999999999999998765432111000000000000000 1 134566999987 3 788


Q ss_pred             eeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        247 RGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       247 r~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      |+|++++  .++.+.+.+.............       .+.........               .++.+....+      
T Consensus       253 ~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------------~~~~a~~~~~------  302 (397)
T 3f9t_A          253 PSGGILF--KDIGYKRYLDVDAPYLTETRQA-------TILGTRVGFGG---------------ACTYAVLRYL------  302 (397)
T ss_dssp             SCEEEEE--SSGGGGGGTCEECTTSSSSEEC-------SSCSSCCSHHH---------------HHHHHHHHHH------
T ss_pred             CceEEEE--eCHHHHHhhccCCccccCCCcc-------ccccccccchH---------------HHHHHHHHHH------
Confidence            9999975  6666665543221111110000       00000000000               0222211111      


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                            ...++++..+.++++++++.+.|+++ ++.+..+..+.++|+++.               .... +.+.|.++|
T Consensus       303 ------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---------------~~~~-~~~~l~~~g  359 (397)
T 3f9t_A          303 ------GREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDE---------------DYKE-VCKKLRDRG  359 (397)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECT---------------THHH-HHHHHHHTT
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeC---------------CHHH-HHHHHHhCC
Confidence                  12236777888889999999999998 888654444445555443               1233 345555669


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |.+.+|..                                                   ++          ++|+++.  
T Consensus       360 i~v~~~~~---------------------------------------------------~~----------~~Ri~~~~~  378 (397)
T 3f9t_A          360 IYVSVCNC---------------------------------------------------VK----------ALRIVVMPH  378 (397)
T ss_dssp             CBCEECSS---------------------------------------------------SS----------EEEEECCTT
T ss_pred             eEEeccCC---------------------------------------------------CC----------EEEEEEcCC
Confidence            99987652                                                   22          8999998  


Q ss_pred             cChHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~  502 (509)
                      ++++++++++++|+++++
T Consensus       379 ~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          379 IKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             CCHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHhhC
Confidence            699999999999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.97  E-value=1.1e-28  Score=254.76  Aligned_cols=327  Identities=13%  Similarity=0.125  Sum_probs=231.4

Q ss_pred             CHHHHHHHHHHHhcccCC-CcccC--CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQ-SVGSY--TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~-~~~~Y--~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      |+.+.+++.+.+...... ....|  +...+..++++++++++    |  ++ +.|++++| ++++..++++++++||  
T Consensus        61 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g--~~-~~i~~~sG-s~a~~~~~~~~~~~gd--  130 (401)
T 1fc4_A           61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G--ME-DAILYSSC-FDANGGLFETLLGAED--  130 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T--CS-EEEEESCH-HHHHHTTHHHHCCTTC--
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----C--CC-cEEEeCCh-HHHHHHHHHHHcCCCC--
Confidence            789999999888763211 11123  23567789999999998    3  23 55655555 6799999999998888  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                        .|+++.|+|..+...++..|.+++.++.       .|++.|++.+++..+. .++++|++++|+||||.+++   +++
T Consensus       131 --~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~  198 (401)
T 1fc4_A          131 --AIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKG  198 (401)
T ss_dssp             --EEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHH
T ss_pred             --EEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHH
Confidence              9999999999998899999999998872       4789999988753211 15889999999999999999   899


Q ss_pred             HHHHHHHCCcEEEEcccCC-cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQ-DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      |.++|+++|+++|+||+|+ ++....+.   .+.+.. ++.    ....++++|+||.++  ++. +||++   .+++++
T Consensus       199 i~~l~~~~~~~li~De~~~~g~~~~~g~---~~~~~~-~~~----~~~di~~~s~sK~~~--~~~-gG~~~---~~~~~~  264 (401)
T 1fc4_A          199 VCDLADKYDALVMVDDSHAVGFVGENGR---GSHEYC-DVM----GRVDIITGTLGKALG--GAS-GGYTA---ARKEVV  264 (401)
T ss_dssp             HHHHHHHTTEEEEEECTTTTTTSSTTSC---CHHHHT-TCT----TCCSEEEEESSSTTC--SSS-CEEEE---ECHHHH
T ss_pred             HHHHHHHcCCEEEEECcccccccCCCCC---ccHHHc-CCC----cCCcEEEecchhhcc--CCC-CEEEE---cCHHHH
Confidence            9999999999999999995 76532111   121111 111    112577889999994  233 49998   689999


Q ss_pred             HHHHHhhhc---ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSISA---MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+......   ..+.+.+                                  .++++...++           ..++.+
T Consensus       265 ~~l~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-----------~~~~~~  299 (401)
T 1fc4_A          265 EWLRQRSRPYLFSNSLAPA----------------------------------IVAASIKVLE-----------MVEAGS  299 (401)
T ss_dssp             HHHHHHCHHHHHSCCCCHH----------------------------------HHHHHHHHHH-----------HHHTCH
T ss_pred             HHHHHhCcCceeCCCCCHH----------------------------------HHHHHHHHHH-----------HHhcCH
Confidence            988765421   2244444                                  3333333322           111135


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV  418 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~  418 (509)
                      +.++.++++++.+.+.|+++ ++++.+ ..+.++|++++-..            +...+ ...|.++||.+.||..|+.+
T Consensus       300 ~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~------------~~~~l-~~~l~~~gi~v~~~~~~~~~  364 (401)
T 1fc4_A          300 ELRDRLWANARQFREQMSAA-GFTLAG-ADHAIIPVMLGDAV------------VAQKF-ARELQKEGIYVTGFFYPVVP  364 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCBCC-SSSSEEEEEEECHH------------HHHHH-HHHHHHTTEECCEECTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCcccC-CCCCEEEEEcCChH------------HHHHH-HHHHHHCCcEEeeecCCCCC
Confidence            77888899999999999988 887774 45666776664111            13333 34455669999998876651


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEK  496 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~  496 (509)
                                                                     .+.+        ++|+++.  .+++++++++++
T Consensus       365 -----------------------------------------------~~~~--------~iRi~~~~~~~~~~i~~~~~~  389 (401)
T 1fc4_A          365 -----------------------------------------------KGQA--------RIRTQMSAAHTPEQITRAVEA  389 (401)
T ss_dssp             -----------------------------------------------TTCE--------EEEEECCTTCCHHHHHHHHHH
T ss_pred             -----------------------------------------------CCCc--------eEEEEeCCCCCHHHHHHHHHH
Confidence                                                           1222        8999998  799999999999


Q ss_pred             HHHHHHHH
Q psy13922        497 FREFHEEF  504 (509)
Q Consensus       497 l~~~~~~~  504 (509)
                      |+++++++
T Consensus       390 l~~~~~~~  397 (401)
T 1fc4_A          390 FTRIGKQL  397 (401)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.97  E-value=1.4e-29  Score=258.27  Aligned_cols=335  Identities=14%  Similarity=0.107  Sum_probs=225.5

Q ss_pred             CCCCCHHHHHHHHHHHhcccC-----CCcccCCCCcchHHHHHH-HHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRG-----QSVGSYTDSPGIEIIRRH-VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~-----~~~~~Y~~~~g~~~lr~~-va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l   96 (509)
                      ....|+.+++++.+.+.....     .....|.+..+..++++. ++++++      .+  +|++|+|+++++..+++++
T Consensus        18 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~~~~g~t~a~~~~~~~~   89 (371)
T 2e7j_A           18 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VARVTNGAREAKFAVMHSL   89 (371)
T ss_dssp             TCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEEEeCChHHHHHHHHHHH
Confidence            344688999999888876210     011225567788999999 999983      22  9999999999999999999


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEe--cCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY--LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      +++||    .|+++.|+|.++...++..|++++.++  .++  ++.+|++.|++.+++....+++++|++++|+||||.+
T Consensus        90 ~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~  163 (371)
T 2e7j_A           90 AKKDA----WVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNL  163 (371)
T ss_dssp             CCTTC----EEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCC
T ss_pred             hCCCC----EEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCccc
Confidence            98888    999999999999999999999999999  654  3689999999999842111278999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      ++   +++|.++|+++|+++|+|++|..+...     .++..+    +.      .++++|+||.+ | ++.|+||++  
T Consensus       164 ~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~----~~------di~~~s~sK~~-~-~~~~~G~~~--  221 (371)
T 2e7j_A          164 PD---VKKIAKVCSEYDVPLLVNGAYAIGRMP-----VSLKEI----GA------DFIVGSGHKSM-A-ASGPIGVMG--  221 (371)
T ss_dssp             CC---HHHHHHHHHTTTCCEEEECTTTBTTBC-----CCHHHH----TC------SEEEEEHHHHS-S-CCSSCEEEE--
T ss_pred             CC---HHHHHHHHHHcCCeEEEECccccCCCC-----CChhhc----CC------CEEEecCCcCC-C-CCCCcEEEE--
Confidence            98   699999999999999999999985431     233322    11      36678999998 4 445999998  


Q ss_pred             cCCHHHHHH-HHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHH
Q psy13922        255 NLDPGVKAM-LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       255 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  333 (509)
                       .++++++. +............                          +..+........++..+++           +
T Consensus       222 -~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~l~-----------~  263 (371)
T 2e7j_A          222 -MKEEWAEIVLRRSEKYKNKEVE--------------------------LLGCTARGATIITLMASFP-----------H  263 (371)
T ss_dssp             -ECTTTTTTTTCBCSSCTTSBGG--------------------------GTTCCCCSHHHHHHHHHHH-----------H
T ss_pred             -EechhhhhhccccccCcccccc--------------------------cccCCcCHHHHHHHHHHHH-----------H
Confidence             56766665 5433221000000                          0000000012222222211           1


Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHhcCCCCeeccCC--ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        334 SREKQSVLDSL--KQRAKMVADTFNSIEGMSCNPVQ--GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       334 ~~~~~~~~~~~--~~~~~~l~~~L~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      ...  ++++.+  +++++++.+.|+++ ++++..+.  .+.++|++++  .             ..+ +.+.|.++||.+
T Consensus       264 ~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~-------------~~~-~~~~l~~~gi~~  324 (371)
T 2e7j_A          264 VRE--RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--V-------------LYE-ISKKAKGGRFFL  324 (371)
T ss_dssp             HHH--HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--H-------------HHH-HHHHSSSGGGHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--C-------------HHH-HHHHHHHCCEEE
Confidence            111  456667  78888999999988 88887653  3446776653  1             223 345555889998


Q ss_pred             ecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEE-EEee---c
Q psy13922        410 VPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFR-TTIL---P  485 (509)
Q Consensus       410 ~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R-ls~~---~  485 (509)
                      .| ..|...                                        ..|    ...+        ++| ++++   .
T Consensus       325 ~~-~~~~~~----------------------------------------~~g----~~~~--------~iRii~~~~~~~  351 (371)
T 2e7j_A          325 YR-ELKSRK----------------------------------------IHG----IKPG--------LTRYFKLSTYGL  351 (371)
T ss_dssp             HH-HHHHTT----------------------------------------EEC----SCTT--------CCSEEEEECTTC
T ss_pred             Ee-cccccc----------------------------------------ccC----CCCC--------ceEEEEeeccCC
Confidence            86 322110                                        000    0112        899 9999   6


Q ss_pred             ChHHHHHHHHHHHHHHHH
Q psy13922        486 QPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       486 ~~~~i~~~~~~l~~~~~~  503 (509)
                      +++++++++++|++++++
T Consensus       352 ~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          352 SDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            899999999999998865

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.96  E-value=1.7e-29  Score=262.98  Aligned_cols=332  Identities=11%  Similarity=0.067  Sum_probs=219.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHH---HhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK---LLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~---~l~~~gd~~  103 (509)
                      |+.+++++.+++........ .|.+..+..++++++++++.   | + .+++|++|+|+++++..+++   .+.+++   
T Consensus        59 ~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~~~~---  129 (426)
T 1sff_A           59 HPKVVAAVEAQLKKLSHTCF-QVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAVENAVKIARAATKRS---  129 (426)
T ss_dssp             CHHHHHHHHHHTTTCSCCCT-TTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHHHHHHHHHHHHHTCC---
T ss_pred             CHHHHHHHHHHHHhCCCccc-cccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHHHHHHHHHHHhhCCC---
Confidence            68899999999876322222 36777888999999999983   2 2 34899999999999999988   666554   


Q ss_pred             CCeEEEcCCCChhHHH-HHHhcCCE-------------EEEEecCCC---CCCCCCHHHHHHHHHhhhccCCceEEEE-e
Q psy13922        104 KPGVLIPIPQYPLYSA-SLAEFNME-------------QIGYYLDES---KQWGLPISELERSITEARKHCNPRAIVI-I  165 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~-~~~~~g~~-------------~~~v~~~~~---~~~~~d~~~L~~~i~~~~~~~~~~~ivi-~  165 (509)
                        .|++++|+|+++.. .+...|.+             ++.++.+..   ..+.+|++.|++.+++.....++++|++ +
T Consensus       130 --~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p  207 (426)
T 1sff_A          130 --GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEP  207 (426)
T ss_dssp             --EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECS
T ss_pred             --eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEec
Confidence              89999999987654 55555543             666666431   1234789999999974100015788887 4


Q ss_pred             CCCCCCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        166 NPGNPTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       166 ~p~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      +++| || ..+|++++++|.++|++||++||+||+|.+|.+.+.  ..++..  .+.        .+.+.||||.+ |. 
T Consensus       208 ~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~--~~~--------~~di~s~sK~~-~~-  272 (426)
T 1sff_A          208 VQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAMEQ--MGV--------APDLTTFAKSI-AG-  272 (426)
T ss_dssp             BCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--TTS--------CCSEEEECGGG-GT-
T ss_pred             ccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc--hhhhhh--cCC--------CCCEEEEcccc-cC-
Confidence            7788 99 789999999999999999999999999998866542  212111  011        11144899999 64 


Q ss_pred             CCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCC
Q psy13922        245 GLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPP  323 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  323 (509)
                      |+|+||++   .++++++.+..... ...+.+.+                                  +++++..+++  
T Consensus       273 GlriG~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~aal~--  313 (426)
T 1sff_A          273 GFPLAGVT---GRAEVMDAVAPGGLGGTYAGNPI----------------------------------ACVAALEVLK--  313 (426)
T ss_dssp             SSCCEEEE---EEHHHHTTSCTTSBCCSSSSCHH----------------------------------HHHHHHHHHH--
T ss_pred             CCceEEEE---EcHHHHhhhccCCcCcCCCCCHH----------------------------------HHHHHHHHHH--
Confidence            99999998   67888877653222 23344555                                  3333332221  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCeeccCCceeEEeecCCC------CHHHHHHHhhcCCCC
Q psy13922        324 QPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS----IEGMSCNPVQGAMYAFPQMKL------PAKAIAKAKAEGKCP  393 (509)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~g~~~  393 (509)
                               +.+ ...+.+.++++++.+.+.|++    ++.+....+. |.++|+++.-      |..          .+
T Consensus       314 ---------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~----------~~  372 (426)
T 1sff_A          314 ---------VFE-QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDA----------KL  372 (426)
T ss_dssp             ---------HHH-HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCH----------HH
T ss_pred             ---------HHH-hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCCh----------HH
Confidence                     000 012334444555555555544    3333334455 6677877741      110          01


Q ss_pred             cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCC
Q psy13922        394 SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQV  473 (509)
Q Consensus       394 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (509)
                      ...+... |.++||.+.||..+..                                                        
T Consensus       373 ~~~l~~~-l~~~gi~v~~~~~~~~--------------------------------------------------------  395 (426)
T 1sff_A          373 TAEIVAR-ARDKGLILLSCGPYYN--------------------------------------------------------  395 (426)
T ss_dssp             HHHHHHH-HHHTTEECEEESTTSC--------------------------------------------------------
T ss_pred             HHHHHHH-HHHCCcEEecCCCCCC--------------------------------------------------------
Confidence            3344444 4467999998764322                                                        


Q ss_pred             CCceeEEEEee--cChHHHHHHHHHHHHHHHHHH
Q psy13922        474 PGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       474 ~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~  505 (509)
                          ++|+++.  .+++++++++++|++++++++
T Consensus       396 ----~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          396 ----VLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             ----EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ----EEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence                8999885  899999999999999987654

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=8.8e-29  Score=250.26  Aligned_cols=320  Identities=15%  Similarity=0.118  Sum_probs=225.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |+...|+.+++++.+.+..    . ..|....+..++|+.+++++    |  +++++|++|+|+++++..+++++.++||
T Consensus         8 ~p~~~~~~v~~a~~~~~~~----~-~~~~~~~~~~~l~~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~~gd   76 (352)
T 1iug_A            8 GPVRLHPKALEALARPQLH----H-RTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLFAPGE   76 (352)
T ss_dssp             SSCCCCHHHHHHHHSCCCC----T-TSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHCCTTC
T ss_pred             CCCCCCHHHHHHhccCCCC----c-cCHHHHHHHHHHHHHHHHHh----C--CCCceEEEcCchHHHHHHHHHhccCCCC
Confidence            3445688898888776542    1 11222346688999999888    3  4468999999999999999999998888


Q ss_pred             CCCCeEEEcCCCChhHH--HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          .|+++.|+|.++.  ..++..|++++.++.+++  +.+|++.|++   +     ++++|++++|+||||.+++   
T Consensus        77 ----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~---~-----~~~~v~~~~~~nptG~~~~---  139 (352)
T 1iug_A           77 ----RVLVPVYGKFSERFYEIALEAGLVVERLDYPYG--DTPRPEDVAK---E-----GYAGLLLVHSETSTGALAD---  139 (352)
T ss_dssp             ----EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCTTTSCC---S-----SCSEEEEESEETTTTEECC---
T ss_pred             ----eEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHhc---c-----CCcEEEEEEecCCcceecC---
Confidence                9999999999865  445668999999998754  4678888876   3     7899999999999999988   


Q ss_pred             HHHHHHHHHHC--CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        180 IQDIIKFAHRE--KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       180 l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++|.++|+++  |+++|+|++|.....     ...+.    +.+      ..+++.|+||.+.|.+|  +||++   .+
T Consensus       140 l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~----~~~------~d~~~~s~~K~~~~~~g--~G~~~---~~  199 (352)
T 1iug_A          140 LPALARAFKEKNPEGLVGADMVTSLLVG-----EVALE----AMG------VDAAASGSQKGLMCPPG--LGFVA---LS  199 (352)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECTTTBTTB-----CCCSG----GGT------CSEEEEESSSTTCCCSC--EEEEE---EC
T ss_pred             HHHHHHHHHhhCCCCEEEEECCccccCc-----ceecc----ccC------eeEEEecCcccccCCCc--eeEEE---EC
Confidence            78999999999  999999999974211     11111    111      13557799995534444  79987   57


Q ss_pred             HHHHHH---------HHHh---h---hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCC
Q psy13922        258 PGVKAM---------LHKS---I---SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP  322 (509)
Q Consensus       258 ~~~~~~---------l~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~  322 (509)
                      +++++.         +...   .   ...+.++..                                  .+.++..+++ 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~-  244 (352)
T 1iug_A          200 PRALERLKPRGYYLDLARELKAQKEGESAWTPAIN----------------------------------LVLAVAAVLE-  244 (352)
T ss_dssp             HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHH----------------------------------HHHHHHHHHH-
T ss_pred             HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHH----------------------------------HHHHHHHHHH-
Confidence            776654         2110   0   011222332                                  3333333221 


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                               ...++++++++.++++++++.+.|+++ |+++..+. .+.++|++++  .         +. +..++. +.
T Consensus       245 ---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~-~~  301 (352)
T 1iug_A          245 ---------EVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLP--E---------GV-PYARVK-EA  301 (352)
T ss_dssp             ---------HHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECC--T---------TC-CHHHHH-HH
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcC--C---------CC-CHHHHH-HH
Confidence                     122226778889999999999999998 88887664 6667776653  1         22 234444 44


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |.++||.+.||..+.                                                  +.+        ++|+
T Consensus       302 l~~~gi~v~~~~~~~--------------------------------------------------~~~--------~iRi  323 (352)
T 1iug_A          302 FAQRGAVIAGGQGPL--------------------------------------------------KGK--------VFRL  323 (352)
T ss_dssp             HHTTTEECEECCGGG--------------------------------------------------TTT--------EEEE
T ss_pred             HHHCCEEEEeCCCcc--------------------------------------------------CCC--------EEEE
Confidence            556699999887221                                                  112        8999


Q ss_pred             Eee--cChHHHHHHHHHHHHHHHHHH
Q psy13922        482 TIL--PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       482 s~~--~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      ++.  ++++++++++++|++++++..
T Consensus       324 ~~~~~~~~~~i~~~~~~l~~~~~~~~  349 (352)
T 1iug_A          324 SLMGAYDRYEALGVAGMFREVLEEIL  349 (352)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EccccCCHHHHHHHHHHHHHHHHHhc
Confidence            998  579999999999999987764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.96  E-value=3e-28  Score=246.79  Aligned_cols=324  Identities=13%  Similarity=0.105  Sum_probs=229.4

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCC
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKK  104 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~  104 (509)
                      ..|+.+++++.+.+..        |.+..|..++++++++++.+.+|  .++++|++|+|+++++..+++.++++||   
T Consensus        25 ~~~~~v~~a~~~~~~~--------~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~~~~gd---   91 (359)
T 1svv_A           25 GMHPKILDLMARDNMT--------QHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLALRPWE---   91 (359)
T ss_dssp             CCCHHHHHHHHHHTTC--------CCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHHCCTTE---
T ss_pred             CCCHHHHHHHHHHHhh--------ccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHHhCCCC---
Confidence            4678999999888764        66666777888999988888877  5678999999999999999999998888   


Q ss_pred             CeEEEcCCCChhHHH--HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh--ccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        105 PGVLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEAR--KHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~--~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                       .|+++.|+|.++..  .++..|.+++.++.+   ++.+|++.|++.+++..  ...++++|++++| ||||.+++.+++
T Consensus        92 -~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l  166 (359)
T 1svv_A           92 -AVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQEL  166 (359)
T ss_dssp             -EEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHH
T ss_pred             -EEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHH
Confidence             99999999999887  478889999999975   46899999999998720  0012899999999 799999999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|+++|+++|+++|+||+|.++..+..........+...       . -++..|.+|.. |  ..+.|+++   .++++
T Consensus       167 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-------~-d~~~~s~~K~g-~--~~~~g~l~---~~~~~  232 (359)
T 1svv_A          167 EDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL-------T-DMFYIGATKAG-G--MFGEALII---LNDAL  232 (359)
T ss_dssp             HHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH-------C-SEEEEECTTTT-C--SSCEEEEE---CSGGG
T ss_pred             HHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhc-------C-CEEEEecccCC-C--CCceEEEE---EcccH
Confidence            9999999999999999999965533211111111111011       1 23455889975 3  25678887   68888


Q ss_pred             HHHHHHhhh--ccc-CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        261 KAMLHKSIS--AML-CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       261 ~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++.+.....  ... ..+..                                  ...++..++.         +.   ..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~---------~~---~~  266 (359)
T 1svv_A          233 KPNARHLIKQRGALMAKGWL----------------------------------LGIQFEVLMK---------DN---LF  266 (359)
T ss_dssp             CTTHHHHHHHTTCCCTTTHH----------------------------------HHHHHHHHTS---------TT---HH
T ss_pred             HHHHHHHHhcCCcccccchh----------------------------------hHHHHHHHHh---------hh---hH
Confidence            777765421  111 11111                                  0011111222         10   14


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++++.++++++++.+.| +.+++++..+.+++++|++++                 .++...+++++||.+.     +.
T Consensus       267 ~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~gi~v~-----~~  323 (359)
T 1svv_A          267 FELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE-----------------NTMIAELNNDFDMYTV-----EP  323 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-----------------HHHHHHHTTTEECEEE-----EE
T ss_pred             HHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-----------------HHHHHHHHHhcCEEEE-----ec
Confidence            667788888999999999 556888887788888886543                 1334555555599983     21


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLE  495 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~  495 (509)
                      .+                                              .+        ..++|+++.  .++++++++++
T Consensus       324 ~~----------------------------------------------~~--------~~~iRi~~~~~~~~~~i~~~~~  349 (359)
T 1svv_A          324 LK----------------------------------------------DG--------TCIMRLCTSWATEEKECHRFVE  349 (359)
T ss_dssp             ET----------------------------------------------TT--------EEEEEEECCTTCCHHHHHHHHH
T ss_pred             cc----------------------------------------------CC--------CceEEEEccCcCCHHHHHHHHH
Confidence            00                                              11        128999876  79999999999


Q ss_pred             HHHHHHHH
Q psy13922        496 KFREFHEE  503 (509)
Q Consensus       496 ~l~~~~~~  503 (509)
                      +|++++++
T Consensus       350 ~l~~~~~~  357 (359)
T 1svv_A          350 VLKRLVAS  357 (359)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHhc
Confidence            99988764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=6.3e-28  Score=247.53  Aligned_cols=346  Identities=12%  Similarity=0.078  Sum_probs=227.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      ++..+|+.+++++.+.+..       .|.+  .....++++.+++++    +.+ ..++|++|+|+++++..+++++.++
T Consensus        30 ~p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~gg~~al~~~~~~~~~~   97 (393)
T 3kgw_A           30 GPSNLAPRVLAAGSLRMIG-------HMQKEMLQIMEEIKQGIQYVF----QTR-NPLTLVVSGSGHCAMETALFNLLEP   97 (393)
T ss_dssp             SCCCCCHHHHHHTTCCCCC-------TTSHHHHHHHHHHHHHHHHHH----TCC-CSEEEEESCCTTTHHHHHHHHHCCT
T ss_pred             CCCCCCHHHHHHhcccccC-------cccHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEeCCcHHHHHHHHHhcCCC
Confidence            3334577887777542211       1221  223455666666666    432 3336999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ||    .|+++.++|.+  +...++..|.+++.++.+++  +.+|++.|++.+++.    ++++|++++|+||||.+++ 
T Consensus        98 gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~-  166 (393)
T 3kgw_A           98 GD----SFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQH----KPVLLFLVHGESSTGVVQP-  166 (393)
T ss_dssp             TC----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC-
T ss_pred             CC----EEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhC----CCcEEEEeccCCcchhhcc-
Confidence            88    99999988863  36778889999999998755  378999999999875    7999999999999999998 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|.++|++||+++|+||+|......     ..+..    .     +. .+++.|+||.+.|  +.++||++   .+
T Consensus       167 --l~~i~~l~~~~~~~li~De~~~~g~~~-----~~~~~----~-----~~-d~~~~s~sK~~~~--~~g~g~~~---~~  224 (393)
T 3kgw_A          167 --LDGFGELCHRYQCLLLVDSVASLGGVP-----IYMDQ----Q-----GI-DIMYSSSQKVLNA--PPGISLIS---FN  224 (393)
T ss_dssp             --CTTHHHHHHHTTCEEEEECTTTTTTSC-----CCTTT----T-----TC-CEEEEESSSTTCC--CSSCEEEE---EC
T ss_pred             --HHHHHHHHHHcCCEEEEECCccccCcc-----cchhh----c-----CC-CEEEecCcccccC--CCceeEEE---EC
Confidence              889999999999999999998742211     11110    0     11 3556689997743  34589998   68


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhcccccc---CCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLF---DDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                      +++++.+......+... ..........+   ....+            ..+......+.++..++          +...
T Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~~~al----------~~~~  281 (393)
T 3kgw_A          225 DKAKYKVYSRKTKPVSF-YTDITYLAKLWGCEGETRV------------IHHTTPVTSLYCLRESL----------ALIA  281 (393)
T ss_dssp             HHHHHHHHTCSSCCSCS-TTCHHHHHHHTTCSSSCCC------------CCCCCCHHHHHHHHHHH----------HHHH
T ss_pred             HHHHHHHhccCCCCCce-eecHHHHHHhhhhccccCC------------CCCCCCHHHHHHHHHHH----------HHHH
Confidence            99998887543211000 00000000000   00000            00001111233333222          1111


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC----ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        335 R-EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       335 ~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      + .++++++.++++++.+.+.|+++ ++++..+.    .+++.|+.+.  .         +. +..++...+++++||.+
T Consensus       282 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~l~~~~gi~v  348 (393)
T 3kgw_A          282 EQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVP--A---------GY-NWRDIVSYVLDHFSIEI  348 (393)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECC--T---------TB-CHHHHHHHHHHHHCEEC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCC--C---------CC-CHHHHHHHHHHhCCEEE
Confidence            1 26888999999999999999998 88776333    3556665553  1         11 34455566666669999


Q ss_pred             ecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e--cC
Q psy13922        410 VPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L--PQ  486 (509)
Q Consensus       410 ~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~--~~  486 (509)
                      .||..+..                                                .+          ++|+++ .  .+
T Consensus       349 ~~g~~~~~------------------------------------------------~~----------~iRi~~~~~~~~  370 (393)
T 3kgw_A          349 SGGLGPTE------------------------------------------------ER----------VLRIGLLGYNAT  370 (393)
T ss_dssp             BCCCGGGT------------------------------------------------TT----------EEEEECCGGGCC
T ss_pred             eCCcccCC------------------------------------------------CC----------EEEEEecccCCC
Confidence            99874332                                                23          899998 5  49


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q psy13922        487 PEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       487 ~~~i~~~~~~l~~~~~~~~~  506 (509)
                      ++++++++++|+++++++.+
T Consensus       371 ~~~i~~~~~~l~~~l~~~~~  390 (393)
T 3kgw_A          371 TENVDRVAEALREALQHCPK  390 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHSCB
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999987643

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.96  E-value=6.2e-28  Score=251.86  Aligned_cols=328  Identities=10%  Similarity=0.100  Sum_probs=231.4

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCC----CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYT----DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~----~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      .|+.+++++.+++.....+ ...|.    ......++++.+++++    |.    +++++++++++++..++++++++||
T Consensus        79 ~~~~v~~a~~~~~~~~~~~-~~~~~~~~G~~~~~~~l~~~la~~~----g~----~~~i~~~sGs~a~~~al~~l~~~gd  149 (427)
T 2w8t_A           79 FDPDVIAAGKEALEKFGSG-TCGSRMLNGTFHDHMEVEQALRDFY----GT----TGAIVFSTGYMANLGIISTLAGKGE  149 (427)
T ss_dssp             GCHHHHHHHHHHHHHHCSC-CCSCTTTTCCCHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHHSCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCC-CcccccccCCcHHHHHHHHHHHHHh----CC----CceEEecCcHHHHHHHHHHhcCCCC
Confidence            3688999999988763221 12233    3344577788888777    42    2556666667799999999998888


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+++.|+|.++...++..|.+++.++.       .|++.|++.+++... .++++|++++++||||.+++   ++
T Consensus       150 ----~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~-~~~~~v~~~~~~n~tG~~~~---l~  214 (427)
T 2w8t_A          150 ----YVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPK-EPAKLVVLEGVYSMLGDIAP---LK  214 (427)
T ss_dssp             ----EEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCS-SSCEEEEEESEETTTTEECC---HH
T ss_pred             ----EEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccC-CCCeEEEEcCCCCCCCCccC---HH
Confidence                9999999999999999999999998873       489999999976311 15889999999999999988   89


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|.++|++||+++|+||+|..+.++.  ...++.... ++.    ...++++.|+||.+ |++|   ||++   ++++++
T Consensus       215 ~l~~l~~~~g~~li~Dea~~~~~~~~--~g~~~~~~~-~~~----~~~di~~~s~sK~~-g~~g---G~v~---~~~~l~  280 (427)
T 2w8t_A          215 EMVAVAKKHGAMVLVDEAHSMGFFGP--NGRGVYEAQ-GLE----GQIDFVVGTFSKSV-GTVG---GFVV---SNHPKF  280 (427)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTSST--TSCCHHHHT-TCT----TCCSEEEEESSSTT-CSCC---EEEE---ECCTTG
T ss_pred             HHHHHHHHcCCEEEEECCccccccCC--CCCchHhhc-CCC----cCCcEEEecchhhh-ccCC---CEEE---eCHHHH
Confidence            99999999999999999999987752  123333321 111    11267788999999 7666   9998   678888


Q ss_pred             HHHHHhhh---cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        262 AMLHKSIS---AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       262 ~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      +.+.....   .....+..                                  ..+++..+++           ..++.+
T Consensus       281 ~~l~~~~~~~~~~~~~~~~----------------------------------~~aa~~~al~-----------~~~~~~  315 (427)
T 2w8t_A          281 EAVRLACRPYIFTASLPPS----------------------------------VVATATTSIR-----------KLMTAH  315 (427)
T ss_dssp             GGGGGTCHHHHSSCCCCHH----------------------------------HHHHHHHHHH-----------HHTSCH
T ss_pred             HHHHHhcccccccCCCCHH----------------------------------HHHHHHHHHH-----------HHhcCH
Confidence            87765421   11223333                                  2222222211           111246


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.++++++++.+.|+++ |+.+. ++..+.++|+.+....            ....+...+ .++||.+.||..|+.
T Consensus       316 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L-~~~Gi~v~~~~~~~~  381 (427)
T 2w8t_A          316 EKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLEDQE------------QAAMMWQAL-LDGGLYVNMARPPAT  381 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESSHH------------HHHHHHHHH-HHTTEECEEECTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECCHH------------HHHHHHHHH-HHCCeEEeeeCCCCC
Confidence            77888999999999999988 88876 5514456676664111            133444444 455999999887665


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLE  495 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~  495 (509)
                      +                                               .+.        .++|+++.  +++++++++++
T Consensus       382 ~-----------------------------------------------~~~--------~~lRi~~~~~~t~e~i~~~~~  406 (427)
T 2w8t_A          382 P-----------------------------------------------AGT--------FLLRCSICAEHTPAQIQTVLG  406 (427)
T ss_dssp             C-----------------------------------------------TTC--------EEEEEECCTTCCHHHHHHHHH
T ss_pred             C-----------------------------------------------CCC--------eEEEEEeCCCCCHHHHHHHHH
Confidence            1                                               122        28999999  59999999999


Q ss_pred             HHHHHHHHHH
Q psy13922        496 KFREFHEEFL  505 (509)
Q Consensus       496 ~l~~~~~~~~  505 (509)
                      +|+++++++.
T Consensus       407 ~l~~~l~~~~  416 (427)
T 2w8t_A          407 MFQAAGRAVG  416 (427)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999987653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=9.9e-28  Score=247.92  Aligned_cols=355  Identities=11%  Similarity=0.019  Sum_probs=229.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCC--cchHHHHHHHHHHHhhhcCCCCCCCc-EEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS--PGIEIIRRHVAQYISRRDGQPADWQD-VILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~   98 (509)
                      ++..+|+.+++++.+.+       ...|.+.  ....++++.+++++    |.  +.++ +++|+|+++++..+++++.+
T Consensus        20 gp~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~~~~~la~~~----~~--~~~~~v~~~~sgt~al~~~~~~~~~   86 (411)
T 3nnk_A           20 GPINADPRVLRAMSSQL-------IGQYDPAMTHYMNEVMALYRGVF----RT--ENRWTMLVDGTSRAGIEAILVSAIR   86 (411)
T ss_dssp             SCCCCCHHHHHHHTSCC-------CCTTCHHHHHHHHHHHHHHHHHH----TC--CCSEEEEEESCHHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHhhccc-------cccccHHHHHHHHHHHHHHHHHh----CC--CCCcEEEECCCcHHHHHHHHHHhcC
Confidence            34446778877765332       1223221  22345555555555    53  3444 88999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      +||    .|+++.|+|++  +...++..|++++.++.+.+  +.+|++.|++.+++.    ++++|++++|+||||.+++
T Consensus        87 ~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~  156 (411)
T 3nnk_A           87 PGD----KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG--EVFTPDQVEDAVKRI----RPRLLLTVQGDTSTTMLQP  156 (411)
T ss_dssp             TTC----EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC
T ss_pred             CCC----EEEEecCCchHHHHHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHhhC----CCeEEEEeCCCCCcceecc
Confidence            988    99999999987  88889999999999998644  578999999999864    7999999999999999988


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                         +++|+++|+++|+++|+|+++......     ..+..          ....+++.|+||.+.|  +.++|+++   .
T Consensus       157 ---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~~----------~~~d~~~~s~~K~l~~--~~g~g~~~---~  213 (411)
T 3nnk_A          157 ---LAELGEICRRYDALFYTDATASLGGNP-----LETDV----------WGLDAVSAGMQKCLGG--PSGTSPIT---L  213 (411)
T ss_dssp             ---CTTHHHHHHHHTCEEEEECTTTBTTBC-----CCTTT----------TTCSEEECCSTTTTCC--CSSEEEEE---E
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcccCCcc-----cchhc----------cCCcEEEecCccccCC--CCceEEEE---E
Confidence               888999999999999999998753221     11110          0114567799998533  34689998   6


Q ss_pred             CHHHHHHHHHhhh---cccCcchhhhhccccccCCCCCch-hHHHHH-HHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        257 DPGVKAMLHKSIS---AMLCPTVLALVSLPQLFDDPRFPD-DVKQRA-QAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       257 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      ++++++.+.....   .+.+....+... .. .....+.. ...... ...+..+.....++.++..++          .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~g~~~~gg~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al----------~  281 (411)
T 3nnk_A          214 SARMEEAIRRRKCVEEGIRTDAHRDGDE-EM-IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECA----------R  281 (411)
T ss_dssp             CHHHHHHHHTTCCCCGGGCCTTCCCCSS-CC-CSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHH----------H
T ss_pred             CHHHHHHHhhcccccccccccccccccC-CC-CcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHH----------H
Confidence            8999998876431   000000000000 00 00000000 000000 000011111111333333332          2


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        332 QFSRE-KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       332 ~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                      ...++ ++++++.++++++++.+.|+++ ++++..+.+   +.++|+.++  .         +. +..++...+++++||
T Consensus       282 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~l~~~l~~~~gi  348 (411)
T 3nnk_A          282 LILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIP--Q---------GI-NGDQARKLMLEDFGI  348 (411)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECC--T---------TC-CHHHHHHHHHHHHSE
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECC--C---------CC-CHHHHHHHHHHhcCe
Confidence            23333 6788899999999999999998 888765543   556665553  1         22 344555666677799


Q ss_pred             EEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e--
Q psy13922        408 CIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L--  484 (509)
Q Consensus       408 ~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~--  484 (509)
                      .++||..  .                                                ...+        ++|+++ .  
T Consensus       349 ~v~~g~~--~------------------------------------------------~~~~--------~iRi~~~~~~  370 (411)
T 3nnk_A          349 EIGTSFG--P------------------------------------------------LHGK--------VWRIGTMGYN  370 (411)
T ss_dssp             EEEECCG--G------------------------------------------------GTTT--------EEEEECCGGG
T ss_pred             EEeCccC--C------------------------------------------------CCCC--------EEEEeCccCc
Confidence            9998742  1                                                1112        899998 4  


Q ss_pred             cChHHHHHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      .+++++++++++|+++++++.
T Consensus       371 ~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          371 ARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcC
Confidence            589999999999999987643

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.96  E-value=1.4e-27  Score=247.43  Aligned_cols=322  Identities=11%  Similarity=0.030  Sum_probs=225.4

Q ss_pred             CHHHHHHHHHHHhcccCCC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      |+.+++++.+++.+.....   ...|+......++++.+++++    |    .+..++++++++++..++++++++||  
T Consensus        75 ~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g----~~~~i~~~sGt~a~~~~l~~~~~~gd--  144 (409)
T 3kki_A           75 HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----G----FDECLLSQSGWNANVGLLQTICQPNT--  144 (409)
T ss_dssp             CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHCCTTC--
T ss_pred             CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----C----CCeEEEecchHHHHHHHHHHhcCCCC--
Confidence            6899999999998743211   122333344567888888877    3    22345555567999999999999998  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                        .|+++.|+|..+...+...|++++.++.       .|++.|++.+++.    ++++|++++|+||||.+++   +++|
T Consensus       145 --~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~----~~~~vi~~~~~nptG~~~~---l~~l  208 (409)
T 3kki_A          145 --NVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH----GPGIIVVDSIYSTLGTIAP---LAEL  208 (409)
T ss_dssp             --EEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH----CSCEEEEESBCTTTCCBCC---HHHH
T ss_pred             --EEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc----CCeEEEECCCCCCCCCcCC---HHHH
Confidence              9999999999999999999999998764       4899999999874    6899999999999999999   8999


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      +++|++||++||+||+|..+.++..  ...+.... ++.    ....+++.|+||.+ |.+   +||++   .++++++.
T Consensus       209 ~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~-~~~----~~~di~~~s~sK~~-~~~---gg~v~---~~~~~~~~  274 (409)
T 3kki_A          209 VNISKEFGCALLVDESHSLGTHGPN--GAGLLAEL-GLT----REVHFMTASLAKTF-AYR---AGAIW---CNNEVNRC  274 (409)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHH-TCG----GGCSEEEEESSSTT-CSS---CEEEE---ESSSGGGT
T ss_pred             HHHHHHcCCEEEEECCccccccCCC--CCcchhhc-CCC----CCCCEEEeecchhh-CCC---ceEEE---ECHHHHHH
Confidence            9999999999999999998554321  12222211 110    01146688999999 544   49987   68888877


Q ss_pred             HHHhhhc--c-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHH
Q psy13922        264 LHKSISA--M-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSV  340 (509)
Q Consensus       264 l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  340 (509)
                      +......  + ...+..                                  ..+++...+          + ..++.+++
T Consensus       275 ~~~~~~~~~~~~~~~~~----------------------------------~~aa~~aal----------~-~~~~~~~~  309 (409)
T 3kki_A          275 VPFISYPAIFSSTLLPY----------------------------------EAAGLETTL----------E-IIESADNR  309 (409)
T ss_dssp             HHHHCHHHHHSBCCCHH----------------------------------HHHHHHHHH----------H-HHHHCHHH
T ss_pred             HHHhCcCccccCCCcHH----------------------------------HHHHHHHHH----------H-HHhcCHHH
Confidence            7654321  1 122222                                  222222221          1 11223678


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCC
Q psy13922        341 LDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPG  420 (509)
Q Consensus       341 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~  420 (509)
                      ++.++++++++.+.|+++ ++.+.  ..+.++|+.+..+.            ....+...++ ++||.+.|+..+...  
T Consensus       310 ~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~------------~~~~~~~~L~-~~Gv~v~~~~~~~~~--  371 (409)
T 3kki_A          310 RQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDER------------NTEKVRDYLE-SNGVFGSVFCRPATS--  371 (409)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESHH------------HHHHHHHHHH-HTTEECEEECTTSSC--
T ss_pred             HHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCHH------------HHHHHHHHHH-HCCceEeeeCCCCcC--
Confidence            888999999999999998 77665  35667776664221            1233444444 559999885543221  


Q ss_pred             ccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHH
Q psy13922        421 TYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFR  498 (509)
Q Consensus       421 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~  498 (509)
                                                                   .+        ..++|+++.  +++++|++++++|+
T Consensus       372 ---------------------------------------------~~--------~~~iRi~~~~~~t~e~i~~~~~~l~  398 (409)
T 3kki_A          372 ---------------------------------------------KN--------KNIIRLSLNSDVNDEQIAKIIEVCS  398 (409)
T ss_dssp             ---------------------------------------------TT--------CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ---------------------------------------------CC--------CcEEEEEccCCCCHHHHHHHHHHHH
Confidence                                                         12        239999998  79999999999999


Q ss_pred             HHHHHH
Q psy13922        499 EFHEEF  504 (509)
Q Consensus       499 ~~~~~~  504 (509)
                      +++++.
T Consensus       399 ~~l~~~  404 (409)
T 3kki_A          399 DAVNYG  404 (409)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            998753

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.96  E-value=6.9e-28  Score=244.44  Aligned_cols=342  Identities=12%  Similarity=0.126  Sum_probs=224.3

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      ++..+|+.+++++.+.+..   .....+....+..++.+.+.+.+.+.+|.. ++++|++|+|+++++..+++++.++ +
T Consensus        11 ~p~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l~~~-~   85 (362)
T 3ffr_A           11 GPSELYPTVRQHMITALDE---KIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNCVEK-K   85 (362)
T ss_dssp             SSCCCCTTHHHHHHHHHHT---TTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHHCSS-E
T ss_pred             CCcCCCHHHHHHHHHHhcC---CccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhccCC-c
Confidence            4556799999999888876   221111122333456666666666666643 5678999999999999999999876 4


Q ss_pred             CCCCeEEEcCCCChh-HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        102 GKKPGVLIPIPQYPL-YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                          .+++..+.|.. +...++..|++++.++.+++  +.+|++.|+  +++     ++++|++++|+||||.+++   +
T Consensus        86 ----~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~--~~~-----~~~~v~~~~~~nptG~~~~---l  149 (362)
T 3ffr_A           86 ----SFHCVNGSFSKRFYEFAGELGREAYKEEAAFG--KGFYPADIT--VPA-----DAEIICLTHNETSSGVSMP---V  149 (362)
T ss_dssp             ----EEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCGGGCC--CCT-----TCCEEEEESEETTTTEECC---H
T ss_pred             ----EEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC--CCCCHHHHh--ccC-----CccEEEEEcCCCCcceeCC---H
Confidence                66666666662 44567788999999998643  588999998  443     7999999999999999999   8


Q ss_pred             HHHHHHHHHC-CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        181 QDIIKFAHRE-KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       181 ~~l~~ia~~~-~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      ++|.++|+++ |+++|+|++|..+....     .+.           . ..+++.|+||.++|++|+  |+++   .+++
T Consensus       150 ~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~-----------~-~d~~~~s~~K~~~~~~G~--g~~~---~~~~  207 (362)
T 3ffr_A          150 EDINTFRDKNKDALIFVDAVSSLPYPKF-----DWT-----------K-IDSVFFSVQKCFGLPAGL--GVWI---LNDR  207 (362)
T ss_dssp             HHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTT-----------S-CSEEEEETTSTTCCCSCC--EEEE---EEHH
T ss_pred             HHHHHHHHhCCCCEEEEecccccCCccc-----Chh-----------H-CcEEEEecccccCCCCce--EEEE---ECHH
Confidence            8899999999 99999999998653211     110           0 135567999999437775  5665   5888


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH-HHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR-EKQ  338 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~  338 (509)
                      +++.+.....+....+..        ++   + ....+........+.....++.++..+++          ...+ .++
T Consensus       208 ~~~~~~~~~~gg~~~~~~--------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~  265 (362)
T 3ffr_A          208 VIEKSKALLAKRKSIGTY--------HT---I-PSMLEKARVNQTPETPNAMNIFLLGKVTG----------DMLQISAD  265 (362)
T ss_dssp             HHHHHHHHHHTTCCCCST--------TS---H-HHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHCHH
T ss_pred             HHHHhhhccccCCCCccc--------cc---H-HHHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccHH
Confidence            888887765411100000        00   0 00000000000011111113333333321          1111 157


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccC----CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPV----QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG  414 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~  414 (509)
                      ++++.++++++++.+.|+++||+++..+    .++.++|+.+.            +  +..++. +.|.++||.+.||..
T Consensus       266 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~-~~l~~~gi~~~~g~~  330 (362)
T 3ffr_A          266 GIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT------------M--LPGEIN-KILEPFDMAVGAGYG  330 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES------------S--CHHHHH-HHHGGGTEEEEECSG
T ss_pred             HHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC------------C--CHHHHH-HHHHHCCeEEecCcc
Confidence            8888999999999999999989887652    34566676554            2  244444 445555999998853


Q ss_pred             CCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHH
Q psy13922        415 FGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKA  492 (509)
Q Consensus       415 f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~  492 (509)
                      +..                                                .+          ++|+|+.  +++++++.
T Consensus       331 ~~~------------------------------------------------~~----------~iRis~~~~~~~e~i~~  352 (362)
T 3ffr_A          331 SKK------------------------------------------------ET----------QIRIANFPAHSLEQVHK  352 (362)
T ss_dssp             GGT------------------------------------------------TT----------EEEEECCTTSCHHHHHH
T ss_pred             ccC------------------------------------------------CC----------EEEEECCCCCCHHHHHH
Confidence            322                                                22          8999987  68999999


Q ss_pred             HHHHHHHHH
Q psy13922        493 MLEKFREFH  501 (509)
Q Consensus       493 ~~~~l~~~~  501 (509)
                      +++.|++++
T Consensus       353 l~~~l~~~~  361 (362)
T 3ffr_A          353 LVQTLKEKI  361 (362)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            998888764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=2.1e-28  Score=254.24  Aligned_cols=344  Identities=13%  Similarity=0.115  Sum_probs=226.8

Q ss_pred             CCCCCHHHHHHHHHHHh--cccCCCc-----ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         23 DPRFPDDVKQRAQAVLD--GCRGQSV-----GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~--~~~~~~~-----~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      ....|+.+++++.+.+.  ...+...     ..|.......++++.+++++    |  +++++|++|+|+++|+..++++
T Consensus        31 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~~~~~v~~~~ggt~a~~~a~~~  104 (423)
T 3lvm_A           31 TTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----G--ADPREIVFTSGATESDNLAIKG  104 (423)
T ss_dssp             CCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----C--CCCCeEEEeCChHHHHHHHHHH
Confidence            34568899999988877  3111100     01112234456677777766    4  4677999999999999999999


Q ss_pred             hhc----CCCCCCCeEEEcCCCChhHHHHH---HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         96 LIE----DVDGKKPGVLIPIPQYPLYSASL---AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        96 l~~----~gd~~~~~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      +.+    +||    .|+++.|+|.++...+   ...|++++.++.+++  +.+|++.|++.+++     ++++|++++|+
T Consensus       105 l~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~-----~~~~v~~~~~~  173 (423)
T 3lvm_A          105 AANFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN--GIIDLKELEAAMRD-----DTILVSIMHVN  173 (423)
T ss_dssp             HHHHHTTTCC----EEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHCCT-----TEEEEECCSBC
T ss_pred             HHHhhccCCC----EEEECCccchHHHHHHHHHHHcCCEEEEeccCCC--CccCHHHHHHhcCC-----CcEEEEEeCCC
Confidence            885    677    9999999999988777   445999999998763  57899999999987     79999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ||||.+++   +++|+++|+++|++||+||+|......     ..+..    .      ...+++.|+||.+ |.+|  +
T Consensus       174 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~~----~------~~di~~~s~sK~~-g~~g--~  232 (423)
T 3lvm_A          174 NEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-----IDLSQ----L------KVDLMSFSGHKIY-GPKG--I  232 (423)
T ss_dssp             TTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCTTT----S------CCSEEEEESTTTT-SCSS--C
T ss_pred             CCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-----cChhh----c------CCCEEEechHHhc-CCCC--e
Confidence            99999999   888999999999999999998763221     11111    0      1146677999988 6666  7


Q ss_pred             EEEeeecCCHHHHHHHHHhhh--------cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhccc
Q psy13922        249 GYSEVINLDPGVKAMLHKSIS--------AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV  320 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~  320 (509)
                      |+++   .++++++.+.....        ....++..                                  .+.++..++
T Consensus       233 G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al  275 (423)
T 3lvm_A          233 GALY---VRRKPRVRIEAQMHGGGHERGMRSGTLPVH----------------------------------QIVGMGEAY  275 (423)
T ss_dssp             EEEE---ECBTTBCCCCCSSCSSCTTTTTCCSCCCHH----------------------------------HHHHHHHHH
T ss_pred             EEEE---EeccccCCCCccccCCcccccccCCCCCHH----------------------------------HHHHHHHHH
Confidence            8887   45554444433211        01112222                                  233332221


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                                ....++++++++.++++++.+.+.|+++|++.+..+.+   +.++++.+.            +. +... 
T Consensus       276 ----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~-  331 (423)
T 3lvm_A          276 ----------RIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFN------------YV-EGES-  331 (423)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEET------------TS-CHHH-
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeC------------CC-CHHH-
Confidence                      22233378889999999999999999998988876543   223333332            11 2333 


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +...|.+  |.+.+|..|.....                          -|.     ..+...|+.....        ..
T Consensus       332 l~~~l~~--i~v~~g~~~~~~~~--------------------------~~~-----~~~~~~g~~~~~~--------~~  370 (423)
T 3lvm_A          332 LIMALKD--LAVSSGSACTSASL--------------------------EPS-----YVLRALGLNDELA--------HS  370 (423)
T ss_dssp             HHHHTTT--EECBCCCC-----C--------------------------CCC-----HHHHHHTCCHHHH--------HT
T ss_pred             HHHHHhh--heeccCccccCCCc--------------------------ccc-----HHHHHhCCCcccc--------Cc
Confidence            3455555  99999987765100                          000     0000000000000        12


Q ss_pred             eEEEEee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        478 HFRTTIL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       478 ~~Rls~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      ++|+++.  .+++++++++++|+++++++++
T Consensus       371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          371 SIRFSLGRFTTEEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8999998  6889999999999999987654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.96  E-value=1.7e-27  Score=246.51  Aligned_cols=327  Identities=12%  Similarity=0.080  Sum_probs=214.2

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEE-EeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVI-LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGY  131 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v  131 (509)
                      ..++++.+++++    |  .++++++ +++|+++++..+++++.++||    .|+++.|+|++  +...++..|++++.+
T Consensus        46 ~~~l~~~la~~~----g--~~~~~~~~~~~s~t~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v  115 (416)
T 3isl_A           46 MNETMEMLRELF----Q--TKNRWAYPIDGTSRAGIEAVLASVIEPED----DVLIPIYGRFGYLLTEIAERYGANVHML  115 (416)
T ss_dssp             HHHHHHHHHHHT----T--CCCSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHh----C--CCCCcEEEecCcHHHHHHHHHHHhcCCCC----EEEEecCCcccHHHHHHHHhcCCeeEEE
Confidence            345555555555    5  4456555 889999999999999999988    99999999998  777888999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      +.+++  +.+|++.|++.+++.    ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.....     
T Consensus       116 ~~~~~--~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-----  181 (416)
T 3isl_A          116 ECEWG--TVFDPEDIIREIKKV----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCE-----  181 (416)
T ss_dssp             ECCTT--CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSC-----
T ss_pred             ecCCC--CCCCHHHHHHHHhhC----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCC-----
Confidence            98765  378999999999843    7999999999999999988   889999999999999999998753221     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh---cccCcc----hhhhhcccc
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS---AMLCPT----VLALVSLPQ  284 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~  284 (509)
                      ..+..    .      ...+++.|+||.+.|  +.++|+++   .++++++.+.....   +|....    ..+..... 
T Consensus       182 ~~~~~----~------~~d~~~~s~~K~l~g--~~g~g~~~---~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~-  245 (416)
T 3isl_A          182 VKVDE----W------KIDAAIGGTQKCLSV--PSGMAPIT---YNERVADVIAARKKVERGIATQADRAALSGNRPIT-  245 (416)
T ss_dssp             CCTTT----T------TCSEEECCSSSTTCC--CSSEEEEE---ECHHHHHHHHTC------------------CCCCS-
T ss_pred             cchhh----c------CCCEEEecCccccCC--CCCeEEEE---ECHHHHHHhhccccccccccccccchhccCCCCCC-
Confidence            11110    0      114557799997534  44589988   68999988875430   010000    00000000 


Q ss_pred             ccCCCCCchhHHHH--HHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Q psy13922        285 LFDDPRFPDDVKQR--AQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE-KQSVLDSLKQRAKMVADTFNSIEGM  361 (509)
Q Consensus       285 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~  361 (509)
                         ...+.......  ....+..+......+.++..++          ....++ ++++++.++++++++.+.|+++ |+
T Consensus       246 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al----------~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~  311 (416)
T 3isl_A          246 ---SNYFDLSQLEDYWSERRLNHHTEATTMLYALREGV----------RLVLEEGLETRFERHRHHEAALAAGIKAM-GL  311 (416)
T ss_dssp             ---CSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHH----------HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ---ccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence               00000000000  0000011111111333333332          223333 7888999999999999999997 88


Q ss_pred             eeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHH
Q psy13922        362 SCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAI  438 (509)
Q Consensus       362 ~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~  438 (509)
                      ++..+.+   +.++++.++  .         +. +..++...+++++||.+.+|.....                     
T Consensus       312 ~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~l~~~L~~~~gi~v~~g~~~~~---------------------  358 (416)
T 3isl_A          312 RLFGDDSCKMPVVTCVEIP--G---------GI-DGESVRDMLLAQFGIEIASSFGPLA---------------------  358 (416)
T ss_dssp             CBCSCGGGBCTTEEEEECC--T---------TC-CHHHHHHHHHHHHCEECBCCCSTTT---------------------
T ss_pred             EeccCccccCCcEEEEeCC--C---------CC-CHHHHHHHHHHhCCEEEecCCCCCC---------------------
Confidence            8876654   455665553  1         22 3455556666667999998763211                     


Q ss_pred             HHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHH-HHHHHHHHHHHHHHHH
Q psy13922        439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEK-LKAMLEKFREFHEEFL  505 (509)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~-i~~~~~~l~~~~~~~~  505 (509)
                                                 .  +        ++|+++.  .++++ +++++++|+++++++.
T Consensus       359 ---------------------------~--~--------~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          359 ---------------------------G--K--------IWRIGTMGYSCRKENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             ---------------------------T--T--------EEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------------------C--C--------EEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence                                       2  2        8999994  45555 9999999999987653

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.96  E-value=4.9e-28  Score=245.68  Aligned_cols=320  Identities=13%  Similarity=0.104  Sum_probs=223.0

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCC-C-cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCC
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTD-S-PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG  102 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~-~-~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~  102 (509)
                      ..|+.+++++.+.+     .  +.|+. . .+..++|++++++++    .+.+++++++|+|+++++..++++++++|| 
T Consensus        14 ~~~~~v~~a~~~~~-----~--~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd-   81 (366)
T 1m32_A           14 TTSRTVKEAMLFDS-----C--TWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLGSALGPQD-   81 (366)
T ss_dssp             CCCHHHHHTTCCCC-----C--TTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEEESCHHHHHHHHHHHSCCTTC-
T ss_pred             CCCHHHHHHHhhhh-----c--CCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEEecChHHHHHHHHHHhcCCCC-
Confidence            36788888875532     1  11221 1 567899999999983    122345899999999999999999988887 


Q ss_pred             CCCeEEEcC-CCChh-HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        103 KKPGVLIPI-PQYPL-YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       103 ~~~~Vlv~~-p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                         .|+++. ++|.. +...++..|.+++.++.++.  +.+|++.|++.+++.   .++++|++++|+||||.+++   +
T Consensus        82 ---~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~---l  150 (366)
T 1m32_A           82 ---KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV--ARPDVQAIDAILNAD---PTISHIAMVHSETTTGMLNP---I  150 (366)
T ss_dssp             ---CEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT--SCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECC---H
T ss_pred             ---eEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhcC---CCeEEEEEecccCCcceecC---H
Confidence               888776 55544 56777888999999998753  478999999999862   14789999999999999998   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|.++|+++|+++|+|++|+.....     .++.    +.      ...+++.|+||.+.|  +.++||++   .++++
T Consensus       151 ~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~----~~------~~di~~~s~~K~~~~--~~g~G~~~---~~~~~  210 (366)
T 1m32_A          151 DEVGALAHRYGKTYIVDAMSSFGGIP-----MDIA----AL------HIDYLISSANKCIQG--VPGFAFVI---AREQK  210 (366)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSC-----CCTT----TT------TCSEEEEESSSTTCC--CSSEEEEE---EEHHH
T ss_pred             HHHHHHHHHcCCEEEEECCccccCcC-----cccc----cc------CccEEEecCcccccC--CCceEEEE---ECHHH
Confidence            89999999999999999999854321     1111    11      124667899997733  34579998   57777


Q ss_pred             HHHHHHhhhcc-------------------cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        261 KAMLHKSISAM-------------------LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       261 ~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                      ++.+......+                   +.++..                                  .+.++..++ 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~al-  255 (366)
T 1m32_A          211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTH----------------------------------TVLAFAQAL-  255 (366)
T ss_dssp             HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHH----------------------------------HHHHHHHHH-
T ss_pred             HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHH----------------------------------HHHHHHHHH-
Confidence            76654321000                   111111                                  233333332 


Q ss_pred             CCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCeeccC---CceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        322 PPQPGEPSYEQFSRE--KQSVLDSLKQRAKMVADTFNSIEGMSCNPV---QGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                               +...++  ++++++.++++++++.+.|+++ ++++..+   .+++++|++++..         .+. +...
T Consensus       256 ---------~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~  315 (366)
T 1m32_A          256 ---------KELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPED---------PQY-RFSE  315 (366)
T ss_dssp             ---------HHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCC---------TTC-CHHH
T ss_pred             ---------HHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCcc---------CCC-CHHH
Confidence                     222233  5678889999999999999988 8777654   4677888766410         011 2344


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +. +.|.++||.+.||..|.                                                 .+         
T Consensus       316 ~~-~~l~~~gi~v~~~~~~~-------------------------------------------------~~---------  336 (366)
T 1m32_A          316 FY-RRLKEQGFVIYPGKVSQ-------------------------------------------------SD---------  336 (366)
T ss_dssp             HH-HHHHHTTEECEECCCSS-------------------------------------------------SC---------
T ss_pred             HH-HHHHHCCEEEECCcCCC-------------------------------------------------CC---------
Confidence            44 44556699999987652                                                 23         


Q ss_pred             eeEEEEee--cChHHHHHHHHHHHHHHH
Q psy13922        477 YHFRTTIL--PQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       477 ~~~Rls~~--~~~~~i~~~~~~l~~~~~  502 (509)
                       ++|+++.  ++++++++++++|+++++
T Consensus       337 -~iRi~~~~~~~~~~i~~~~~~l~~~~~  363 (366)
T 1m32_A          337 -CFRIGNIGEVYAADITALLTAIRTAMY  363 (366)
T ss_dssp             -EEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred             -EEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence             8999998  589999999999988764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.96  E-value=7.1e-27  Score=240.18  Aligned_cols=305  Identities=11%  Similarity=0.121  Sum_probs=206.6

Q ss_pred             CCC-CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hc
Q psy13922         21 FDD-PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IE   98 (509)
Q Consensus        21 ~~~-~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~   98 (509)
                      ++. |.+++.+++++.+.+..   +.+. |.+..+..++|++++++++      . .+.|++|+| +++++.+++++ .+
T Consensus         9 f~~~p~~~~~~~~a~~~~l~~---~~~~-~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG-t~al~~~l~~l~~~   76 (388)
T 1b9h_A            9 FPAWPQYDDAERNGLVRALEQ---GQWW-RMGGDEVNSFEREFAAHHG------A-AHALAVTNG-THALELALQVMGVG   76 (388)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHT---SCCB-TTTCSHHHHHHHHHHHHTT------C-SEEEEESCH-HHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHc---CCee-ecCCHHHHHHHHHHHHHhC------C-CeEEEeCCH-HHHHHHHHHHcCCC
Confidence            444 77789999999999987   3333 6677788999999999984      1 256777766 89999999999 78


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|.++...++..|++++.++.+++ +|.+|++.|++.+++     ++++|+   |+||||.+.+  
T Consensus        77 ~gd----~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~-----~~~~v~---~~n~tG~~~~--  141 (388)
T 1b9h_A           77 PGT----EVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP-----RTKVIM---PVHMAGLMAD--  141 (388)
T ss_dssp             TTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT-----TEEEEC---CBCGGGCCCC--
T ss_pred             CcC----EEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc-----CceEEE---EeCCccCcCC--
Confidence            888    9999999999999999999999999998764 478999999999875     688777   9999999976  


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                       +++|.++|+++|++||+|++|+.+....+   .++.    ..       ..+.+.||||.. +++|.|+||++.  .++
T Consensus       142 -l~~i~~la~~~~~~li~D~a~~~g~~~~~---~~~~----~~-------~~i~~~S~s~~K-~l~g~~~G~~~~--~~~  203 (388)
T 1b9h_A          142 -MDALAKISADTGVPLLQDAAHAHGARWQG---KRVG----EL-------DSIATFSFQNGK-LMTAGEGGAVVF--PDG  203 (388)
T ss_dssp             -HHHHHHHHHHHTCCBCEECTTCTTCEETT---EEGG----GS-------SSCEEEECCTTS-SSCSSSCEEEEE--CTT
T ss_pred             -HHHHHHHHHHcCCEEEEecchhcCCccCC---eecc----cc-------cceEEEEccCCC-cccCCCeEEEEE--CCH
Confidence             89999999999999999999986432211   1111    11       145577999666 466779999973  333


Q ss_pred             HH--HHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        259 GV--KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      .+  ++.+........  ...     ...+....              .+.........+..+           ....++
T Consensus       204 ~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~--------------~g~~~~~~~~~~a~~-----------~~~~~~  251 (388)
T 1b9h_A          204 ETEKYETAFLRHSCGR--PRD-----DRRYFHKI--------------AGSNMRLNEFSASVL-----------RAQLAR  251 (388)
T ss_dssp             CHHHHHHHHHHTBTTC--CTT-----CSSCCCCS--------------CCCBCBCBHHHHHHH-----------HHHHTT
T ss_pred             HHHHHHHHHHHHhCCC--Ccc-----Cccceeec--------------ccccCCcCHHHHHHH-----------HHHHHH
Confidence            46  566654332100  000     00000000              000000000011111           112223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeecc------CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNP------VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      +++.++.++++++++.+.|+++|++.+..      +.+++++|+.++-...          .+.+.+ ...|.++||.+.
T Consensus       252 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~~~L~~~gI~v~  320 (388)
T 1b9h_A          252 LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----------ERRNAL-VDRLVEAGLPAF  320 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----------HHHHHH-HHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCc----------ccHHHH-HHHHHHCCCCcc
Confidence            66677888889999999999988888764      3567888877751100          012333 445556899999


Q ss_pred             cCC
Q psy13922        411 PGA  413 (509)
Q Consensus       411 pg~  413 (509)
                      ++.
T Consensus       321 ~~~  323 (388)
T 1b9h_A          321 AAF  323 (388)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            865

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.96  E-value=1.5e-27  Score=244.14  Aligned_cols=339  Identities=10%  Similarity=0.076  Sum_probs=222.7

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCC--cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS--PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--   97 (509)
                      +++.+++.+++++.+.+..       .|.+.  ....++++.+++++...++  +++++|++|+|+++++..+++++.  
T Consensus        12 ~p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~~~~~~   82 (385)
T 2bkw_A           12 GPIILSGAVQKALDVPSLG-------HTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFASNFILS   82 (385)
T ss_dssp             SSCCCCHHHHHTTSCCCCC-------TTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred             CCcCchHHHHHHHhccccc-------cCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHHHHhcc
Confidence            4455677777776443322       12221  2456788889988865443  457899999999999999999997  


Q ss_pred             -cCCCCCCCeEEEc-CCCChhHH-HHHHhcCCEEEEEec-CCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         98 -EDVDGKKPGVLIP-IPQYPLYS-ASLAEFNMEQIGYYL-DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        98 -~~gd~~~~~Vlv~-~p~y~~~~-~~~~~~g~~~~~v~~-~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                       ++||    +|+++ .|.|+.+. ..++..|++++.++. ++  ++.+|++.|++.+++.    ++++|++++|+||||.
T Consensus        83 ~~~gd----~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~  152 (385)
T 2bkw_A           83 KAPNK----NVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI--GESVPLELITEKLSQN----SYGAVTVTHVDTSTAV  152 (385)
T ss_dssp             TCSCC----EEEEECSSHHHHHHHHHHHHTTCEEEEECCSST--TSCCCHHHHHHHHHHS----CCSEEEEESEETTTTE
T ss_pred             CCCCC----eEEEEcCCcchHHHHHHHHHcCCceEEEecCCC--CCCCCHHHHHHHHhcC----CCCEEEEEccCCCcCe
Confidence             7887    98887 55666653 677888999999998 53  4578999999999863    6899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHC--CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        174 VLTKENIQDIIKFAHRE--KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      +++   +++|+++|+++  |+++|+|++|.....     ..++.    +.     + ..+++.|+||.+.|++|  +||+
T Consensus       153 ~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~~~~----~~-----~-~d~~~~s~~K~~~~~~G--~G~~  212 (385)
T 2bkw_A          153 LSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEFD----EW-----G-VDFALTASQKAIGAPAG--LSIS  212 (385)
T ss_dssp             ECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCTT----TT-----T-CSEEEEESSSTTCCCSC--EEEE
T ss_pred             EcC---HHHHHHHHHhhCCCCEEEEECccccCCc-----ccccc----cc-----C-ceEEEecCccccccCCc--ceEE
Confidence            998   78999999999  999999999974221     11111    11     1 13556799997634566  4888


Q ss_pred             eeecCCHHHHH-HHHHhh---hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhc------ccCcccccchhhcccC
Q psy13922        252 EVINLDPGVKA-MLHKSI---SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDG------CRGQSVGQTVMDCVVN  321 (509)
Q Consensus       252 ~~~~~~~~~~~-~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~al~~~~~  321 (509)
                      +   .++++++ .+....   .........                 ........+..      ++....++.++..+++
T Consensus       213 ~---~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  272 (385)
T 2bkw_A          213 L---CSSRFMDYALNDSKNGHVHGYFSSLR-----------------RWTPIMENYEAGKGAYFATPPVQLINSLDVALK  272 (385)
T ss_dssp             E---ECHHHHHHHTCHHHHCCCSCSTTCHH-----------------HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred             E---EcHHHHHHHHhhccCCCCCceeecHH-----------------HHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Confidence            7   5777766 542110   000000000                 00000000000      0111113333333321


Q ss_pred             CCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCCCeeccC-----CceeEEeecCCCCHHHHHHHhhcCCCCc
Q psy13922        322 PPQPGEPSYEQFSRE-KQSVLDSLKQRAKMVADTF-NSIEGMSCNPV-----QGAMYAFPQMKLPAKAIAKAKAEGKCPS  394 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L-~~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~g~~~~  394 (509)
                                ...++ ++++++.++++++++.+.| +++ ++++..+     ..+.++|+.++               +.
T Consensus       273 ----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~---------------~~  326 (385)
T 2bkw_A          273 ----------EILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA---------------DP  326 (385)
T ss_dssp             ----------HHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS---------------CH
T ss_pred             ----------HHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecC---------------CH
Confidence                      12222 5677888999999999999 888 8887643     24667776664               13


Q ss_pred             HHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCC
Q psy13922        395 VLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVP  474 (509)
Q Consensus       395 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (509)
                      .++ .+.|.++||.+.+|..+..                                                 +.+     
T Consensus       327 ~~~-~~~l~~~gi~v~~g~~~~~-------------------------------------------------~~~-----  351 (385)
T 2bkw_A          327 PDV-IAFLKSHGVVIAGGIHKDI-------------------------------------------------GPK-----  351 (385)
T ss_dssp             HHH-HHHHHHTTEECBCCCCTTT-------------------------------------------------GGG-----
T ss_pred             HHH-HHHHHHCCeEEeCCCCccc-------------------------------------------------CCC-----
Confidence            333 4445678999998875422                                                 112     


Q ss_pred             CceeEEEE-ee-----cChHHHHHHHHHHHHHHHH
Q psy13922        475 GTYHFRTT-IL-----PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       475 ~~~~~Rls-~~-----~~~~~i~~~~~~l~~~~~~  503 (509)
                         ++|++ ++     ++++++++++++|++++++
T Consensus       352 ---~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          352 ---YIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             ---EEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             ---EEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence               89999 65     5899999999999988753

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.96  E-value=2.6e-27  Score=247.14  Aligned_cols=352  Identities=13%  Similarity=0.017  Sum_probs=205.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      |+.+++++.+++...     ..|.+..+..+.++++++++.+.++  ...++|++|+|+++++..+++.++..    |++
T Consensus        47 ~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~  119 (430)
T 3i4j_A           47 RAEVGERMAAQAARL-----PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATESAVKLARQYHVERGEP  119 (430)
T ss_dssp             CHHHHHHHHHHHHHC-----CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc-----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            899999999998872     1233334445677777777776655  45679999999999999999988742    211


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCE---------------EEEEecCCCC-CCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNME---------------QIGYYLDESK-QWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~~~~-~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                      .++.|++..|+|+++...+...+..               +..++.+... ....|++.|++.+++... .++++|+++.
T Consensus       120 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~~~~vi~~p  198 (430)
T 3i4j_A          120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP-ETVAAFMAEP  198 (430)
T ss_dssp             TCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG-GGEEEEEECS
T ss_pred             CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC-CCEEEEEEcC
Confidence            2349999999999987665554432               1122211100 001256899999975210 1456666666


Q ss_pred             CCC-CCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        167 PGN-PTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       167 p~N-PtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      ++| ++|. .++++++++|.++|++||+++|+||+|.+|...+.  ..+.... ++..     .++   .+|||.+ | +
T Consensus       199 ~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~--~~~~~~~-~~~~-----~di---~t~sK~l-~-~  265 (430)
T 3i4j_A          199 VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS--PLALSRW-SGVT-----PDI---AVLGKGL-A-A  265 (430)
T ss_dssp             SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT-TTCC-----CSE---EEECGGG-T-T
T ss_pred             cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhhhh-cCCC-----CcE---EEEcccc-c-C
Confidence            677 8886 77888999999999999999999999999876542  2222111 0111     113   3689999 5 6


Q ss_pred             C-CeeEEEeeecCCHHHHHHHHHh-----hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        245 G-LRGGYSEVINLDPGVKAMLHKS-----ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       245 G-lr~G~v~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      | +|+||++   +++++++.+.+.     ....++.+.+++.+                              +.+++..
T Consensus       266 G~~r~G~~~---~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aa------------------------------a~aal~~  312 (430)
T 3i4j_A          266 GYAPLAGLL---AAPQVYETVMGGSGAFMHGFTYAGHPVSVAA------------------------------GLSVLDI  312 (430)
T ss_dssp             TSSCCEEEE---ECHHHHHHHHHTTCBCCCCCTTTTCHHHHHH------------------------------HHHHHHH
T ss_pred             CccccEEEE---ECHHHHHHHhccCCcccccCCCCCCHHHHHH------------------------------HHHHHHH
Confidence            9 9999998   799999999863     22344556652222                              2222222


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                      ..+         +   +..+.+++....+++.+.+.+.++|++...++.|.++ ++++.... ... . .........+ 
T Consensus       313 ~~~---------~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~-~-~~~~~~~~~~-  375 (430)
T 3i4j_A          313 VER---------E---DLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLL-GVVLGDLA-TGQ-A-FETPGIASRI-  375 (430)
T ss_dssp             HHH---------T---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE-EEEEC---------------CHHHH-
T ss_pred             HHc---------c---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEE-EEEecccc-ccC-C-CccHHHHHHH-
Confidence            100         1   1134444444455555555555566666666666654 44443110 000 0 0000012333 


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ...|.++||.++|+..+...                                               .+..        +
T Consensus       376 ~~~l~~~Gv~v~~~~~~~~~-----------------------------------------------~~~~--------~  400 (430)
T 3i4j_A          376 GAAALKRGLITYPGSGAEPN-----------------------------------------------GRGD--------H  400 (430)
T ss_dssp             HHHHHHTTEECC----------------------------------------------------------C--------E
T ss_pred             HHHHHhCCCEEEecccccCC-----------------------------------------------CCCC--------E
Confidence            44555789999997533220                                               1222        8


Q ss_pred             EEEEee--cChHHHHHHHHHHHHHHHHH
Q psy13922        479 FRTTIL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       479 ~Rls~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                      +|++++  .+++++++++++|+++++++
T Consensus       401 iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          401 LLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999987  89999999999999999764

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.96  E-value=1.1e-27  Score=246.50  Aligned_cols=312  Identities=11%  Similarity=0.121  Sum_probs=215.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----VD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----gd  101 (509)
                      ++.+.+++.+.+....... ..| +..-..++++.+++++    |    ++++++|+|+++++..+++.+..+     +.
T Consensus        54 ~p~v~~a~~~~~~~~~~~~-~~~-~~~~~~~l~~~la~~~----g----~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~  123 (392)
T 3ruy_A           54 HPKIINALIDQANRVTLTS-RAF-HSDQLGPWYEKVAKLT----N----KEMVLPMNTGAEAVETAIKTARRWAYDVKKV  123 (392)
T ss_dssp             CHHHHHHHHHHHTTCSCCC-TTS-EETTHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHhccccc-ccc-CCHHHHHHHHHHHHhc----C----CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence            7899999999987732111 112 2233366777777666    3    679999999999999999988755     00


Q ss_pred             -CCCCeEEEcCCCChhHHHHHHhcCCE-------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922        102 -GKKPGVLIPIPQYPLYSASLAEFNME-------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus       102 -~~~~~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                       +.++.|+++.|+|+++...+...+..             +..++.       .|++.|++.++.     ++++|++++|
T Consensus       124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~-----~~~~v~~~~~  191 (392)
T 3ruy_A          124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAITP-----NTAAFILEPI  191 (392)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCCT-----TEEEEEECSS
T ss_pred             CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhcc-----CeEEEEEeCc
Confidence             01239999999998876665544322             333332       279999999885     7999999999


Q ss_pred             CCCCCCCCCHHH-HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-
Q psy13922        168 GNPTGQVLTKEN-IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-  245 (509)
Q Consensus       168 ~NPtG~~~s~~~-l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-  245 (509)
                      +||||.+++.++ +++|+++|++||+++|+||+|.+|.+.+.  ..+...  .+..     .+++   |+||.++  +| 
T Consensus       192 ~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~--~~~~-----~d~~---~~SK~l~--gG~  257 (392)
T 3ruy_A          192 QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK--VFACDW--DNVT-----PDMY---ILGKALG--GGV  257 (392)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS--SSGGGG--GTCC-----CSEE---EECGGGG--TTT
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc--chhhhc--cCCC-----CCEE---EEchhhh--CCh
Confidence            999999996555 99999999999999999999998876542  222111  1111     1233   7789984  57 


Q ss_pred             CeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        246 LRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      +|+||++   .++++++.+..... ...+.+.+                                  ++.++..+++   
T Consensus       258 ~~~G~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~---  297 (392)
T 3ruy_A          258 FPISCAA---ANRDILGVFEPGSHGSTFGGNPL----------------------------------ACAVSIAALE---  297 (392)
T ss_dssp             SCCEEEE---ECHHHHTTCCTTSSCCSSTTCHH----------------------------------HHHHHHHHHH---
T ss_pred             hhhEEEE---ECHHHHhhhccCCcCCCCCCCHH----------------------------------HHHHHHHHHH---
Confidence            9999998   68888877765433 23344555                                  3333333322   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHH
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI--EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELL  402 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll  402 (509)
                              ..+ .+++++.++++++++.+.|+++  +.+....+.++++.|. ++            +  +...+. ..|
T Consensus       298 --------~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~-~~------------~--~~~~l~-~~l  352 (392)
T 3ruy_A          298 --------VLE-EEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIE-LN------------E--PARPYC-EQL  352 (392)
T ss_dssp             --------HHH-HTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTEEEEE-ES------------S--CSHHHH-HHH
T ss_pred             --------HHH-hhhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeEEEEE-Ec------------c--hHHHHH-HHH
Confidence                    111 2567788889999999999987  3355556677766653 43            1  244444 455


Q ss_pred             hhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE
Q psy13922        403 ERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT  482 (509)
Q Consensus       403 ~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls  482 (509)
                      .++||.+.||.                                                    .+          ++|++
T Consensus       353 ~~~gi~v~~~~----------------------------------------------------~~----------~iRi~  370 (392)
T 3ruy_A          353 KAAGLLCKETH----------------------------------------------------EN----------VIRIA  370 (392)
T ss_dssp             HTTTEECCCBT----------------------------------------------------TT----------EEEEC
T ss_pred             HHCCcEEecCC----------------------------------------------------CC----------EEEEE
Confidence            57899998753                                                    22          89999


Q ss_pred             --eecChHHHHHHHHHHHHHH
Q psy13922        483 --ILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       483 --~~~~~~~i~~~~~~l~~~~  501 (509)
                        +..+++++++++++|++++
T Consensus       371 ~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          371 PPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence              4489999999999999876

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.95  E-value=9.5e-28  Score=247.96  Aligned_cols=317  Identities=13%  Similarity=0.147  Sum_probs=213.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-------C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-------D   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~   99 (509)
                      |+.+.+++.+++.+.... ...| +.....++++.+++++    |    .++|++|+|+++++..+++.++.       +
T Consensus        57 ~p~v~~a~~~~~~~~~~~-~~~~-~~~~~~~l~~~la~~~----~----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~  126 (406)
T 4adb_A           57 HPELREALNEQASKFWHT-GNGY-TNEPVLRLAKKLIDAT----F----ADRVFFCNSGAEANEAALKLARKFAHDRYGS  126 (406)
T ss_dssp             CHHHHHHHHHHHTTCSCC-CTTS-CCHHHHHHHHHHHHHS----S----CSEEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcccc-cCCc-CCHHHHHHHHHHHhhC----C----CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            789999999998873211 1223 2333455666666554    3    45999999999999999998875       5


Q ss_pred             C-CCCCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922        100 V-DGKKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus       100 g-d~~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                      + +    .|+++.|+|+++...+...+.             .+..++.       .|++.|++.+++     ++++|+++
T Consensus       127 g~~----~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~-----~~~~v~~~  190 (406)
T 4adb_A          127 HKS----GIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDD-----STCAVIVE  190 (406)
T ss_dssp             TCC----EEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCST-----TEEEEEEC
T ss_pred             CCc----EEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcC-----CeEEEEEe
Confidence            4 5    999999999998666555443             3333332       378999988875     79999988


Q ss_pred             CCCCCCCCCC--CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        166 NPGNPTGQVL--TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       166 ~p~NPtG~~~--s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                       |+||+|.++  +.+++++|+++|++||+++|+||+|.+|.+.+.  ..+....  +..     .+++   ||||.+ | 
T Consensus       191 -p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~--~~~-----~d~~---t~sK~~-~-  255 (406)
T 4adb_A          191 -PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE--LYAYMHY--GVT-----PDLL---TTAKAL-G-  255 (406)
T ss_dssp             -SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHHH--TCC-----CSEE---EECGGG-G-
T ss_pred             -CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hHHHHhc--CCC-----CCEE---Eechhh-c-
Confidence             999999988  999999999999999999999999998876542  2222221  221     1244   679999 6 


Q ss_pred             CCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCC
Q psy13922        244 CGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP  322 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~  322 (509)
                      +|+|+||++   .++++++.+..... ...+.+.+                                  .+.++...++ 
T Consensus       256 ~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~l~-  297 (406)
T 4adb_A          256 GGFPVGALL---ATEECARVMTVGTHGTTYGGNPL----------------------------------ASAVAGKVLE-  297 (406)
T ss_dssp             TTSCCEEEE---ECHHHHHTCCTTSSCCSSTTCHH----------------------------------HHHHHHHHHH-
T ss_pred             CCCCeEEEE---EcHHHHhhhccCCcCCCCCCCHH----------------------------------HHHHHHHHHH-
Confidence            999999998   79999888765533 23345555                                  3333322221 


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH
Q psy13922        323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG---MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF  399 (509)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  399 (509)
                                ..+ .+++++.++++++.+.+.|+++..   .....+..+.++|+.+..+.          ......+. 
T Consensus       298 ----------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~-  355 (406)
T 4adb_A          298 ----------LIN-TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADY----------AGQAKQIS-  355 (406)
T ss_dssp             ----------HHS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTT----------TTCHHHHH-
T ss_pred             ----------HHH-hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCc----------HHHHHHHH-
Confidence                      000 145566667777777777765411   11111223566676664210          01234444 


Q ss_pred             HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeE
Q psy13922        400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHF  479 (509)
Q Consensus       400 ~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ..|.++||.+.|+.                                                    .+          ++
T Consensus       356 ~~l~~~gi~v~~~~----------------------------------------------------~~----------~i  373 (406)
T 4adb_A          356 QEAAKAGVMVLIAG----------------------------------------------------GN----------VV  373 (406)
T ss_dssp             HHHHHTTEECEESS----------------------------------------------------TT----------EE
T ss_pred             HHHHHCCcEEeecC----------------------------------------------------CC----------eE
Confidence            44555699998743                                                    22          89


Q ss_pred             EEE--eecChHHHHHHHHHHHHHHHHHHh
Q psy13922        480 RTT--ILPQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       480 Rls--~~~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      |++  +..+++++++++++|+++++++.+
T Consensus       374 Ri~~~~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          374 RFAPALNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            995  558999999999999999987754

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=1.2e-26  Score=237.06  Aligned_cols=338  Identities=11%  Similarity=0.079  Sum_probs=220.3

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      ++..+|+.+++++.+.+..       .|.  .+..++.+++++++.+.+|.+.+.+.+++|+|+++++..++++++++||
T Consensus        26 gp~~~~~~v~~a~~~~~~~-------~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd   96 (376)
T 3f0h_A           26 GPVMSSEEVRAIGAEQVPY-------FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKD   96 (376)
T ss_dssp             SSCCCCHHHHHHHTSCCCC-------CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTC
T ss_pred             CCCCCcHHHHHHhcCCCCC-------CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCC
Confidence            4455688888887554422       132  2334566666666666667543334566699999999999999999988


Q ss_pred             CCCCeEEEcCCCChhHH--HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          .|+++.|.|.+..  ..+...|.+++.++.+.  ++.+|++.|++.++.     ++++|++++|+||||.+++   
T Consensus        97 ----~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~-----~~~~v~~~~~~nptG~~~~---  162 (376)
T 3f0h_A           97 ----KVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH--GKKLTKEKLYEYDNQ-----NFTGLLVNVDETSTAVLYD---  162 (376)
T ss_dssp             ----CEEEEESSHHHHHHHHHHHHTTCCEEEEECCT--TCCCCHHHHHTTTTS-----CCCEEEEESEETTTTEECC---
T ss_pred             ----eEEEEeCChhhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHhhcc-----CceEEEEecccCCcceecC---
Confidence                9999998777654  34677799999998874  358899999987655     7999999999999999999   


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|.++|+++|+++|+|++|..+...     ..+...    +     . .+++.|+||.++|++|  +|+++   .+++
T Consensus       163 l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~----~-----~-d~~~~s~~K~l~~~~G--~g~~~---~~~~  222 (376)
T 3f0h_A          163 TMMIGEFCKKNNMFFVCDCVSAFLADP-----FNMNEC----G-----A-DVMITGSQKVLACPPG--ISVIV---LAPR  222 (376)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHHHH----T-----C-SEEEEETTTTTCCCSS--CEEEE---ECHH
T ss_pred             HHHHHHHHHHcCCEEEEEcCccccCcc-----cccccc----C-----c-cEEEecCcccccCCCc--eEEEE---ECHH
Confidence            999999999999999999999875432     222221    1     1 3556799999942566  56666   6899


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccccc---chhhcccCCCCCCCCchHHHHH-
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ---TVMDCVVNPPQPGEPSYEQFSR-  335 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~al~~~~~~~~~~~~~~~~~~~-  335 (509)
                      +++.+.............                   ........++.......   .++..++          ....+ 
T Consensus       223 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~al----------~~~~~~  273 (376)
T 3f0h_A          223 GVERVEKSKVRTMYFDLK-------------------DALKNQERGQTPFTPAVGILLQINERL----------KEIKKH  273 (376)
T ss_dssp             HHHHHHTCCCCCSTTCHH-------------------HHHHHHTTTCCSSCCCHHHHHHHHHHH----------HHHHHT
T ss_pred             HHHHhhcCCCCceeecHH-------------------HHHhhcccCCCCCCCcHHHHHHHHHHH----------HHHHHh
Confidence            988886532210000000                   00000000000001111   2222221          11112 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEe-ecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        336 -EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF-PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       336 -~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                       .++++++.++++++.+.+.|+++ ++.+.++.....++ +...            +. +...+...+++++||.++||.
T Consensus       274 ~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~------------~~-~~~~l~~~l~~~~gi~v~~g~  339 (376)
T 3f0h_A          274 GGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPT------------TA-NAYDIFLKLKDEYGIWICPNG  339 (376)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEES------------SS-CHHHHHHHHHHHSSEECEECC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCC------------CC-CHHHHHHHHHHhCCEEEecCc
Confidence             26778888899999999999988 66665543222222 2111            21 244445555555599999873


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLK  491 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~  491 (509)
                      .  .                                                .+.+        ++|+++.  +++++++
T Consensus       340 ~--~------------------------------------------------~~~~--------~lRis~~~~~t~e~i~  361 (376)
T 3f0h_A          340 G--E------------------------------------------------MKDT--------IFRVGHIGALTHEDNT  361 (376)
T ss_dssp             G--G------------------------------------------------GTTT--------CEEEECCSSCCHHHHH
T ss_pred             c--c------------------------------------------------cCCC--------EEEEecCCCCCHHHHH
Confidence            2  1                                                1222        8999986  7999999


Q ss_pred             HHHHHHHHHHHH
Q psy13922        492 AMLEKFREFHEE  503 (509)
Q Consensus       492 ~~~~~l~~~~~~  503 (509)
                      +++++|++++++
T Consensus       362 ~~~~~l~~~l~~  373 (376)
T 3f0h_A          362 TLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998863

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.95  E-value=2.8e-27  Score=244.31  Aligned_cols=335  Identities=17%  Similarity=0.106  Sum_probs=224.9

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCc---chHH--HHHHHH-HHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSP---GIEI--IRRHVA-QYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~---g~~~--lr~~va-~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      +.+.+|+.+++++.+.+.+   .....|+...   |.+.  ++++++ +.+.+.+|  .++++|++++|+ +++..++++
T Consensus        31 ~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g--~~~~~i~~~sGt-~a~~~~~~~  104 (407)
T 2dkj_A           31 SENFVSKQVREAVGSVLTN---KYAEGYPGARYYGGCEVIDRVESLAIERAKALFG--AAWANVQPHSGS-QANMAVYMA  104 (407)
T ss_dssp             TCCCCCHHHHHHHTSGGGG---CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHH-HHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHhhhhc---CcccCCCcccccCCchHHHHHHHHHHHHHHHHhC--CCcceEEecchH-HHHHHHHHH
Confidence            5666799999999888865   2223355432   4332  344322 34444445  344556667765 599999999


Q ss_pred             hhcCCCCCCCeEEEcCCCChhHH---HHHHhcCC--EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         96 LIEDVDGKKPGVLIPIPQYPLYS---ASLAEFNM--EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        96 l~~~gd~~~~~Vlv~~p~y~~~~---~~~~~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                      +.++||    .|+++.|+|..+.   ..++..|.  ..+.++.++ .++.+|++.|++.+++.    ++++|++++|+||
T Consensus       105 ~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~----~~~~v~~~~p~~~  175 (407)
T 2dkj_A          105 LMEPGD----TLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEH----RPKVIVAGASAYP  175 (407)
T ss_dssp             HCCTTC----EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHH----CCSEEEECCSSCC
T ss_pred             hcCCCC----EEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhc----CCeEEEEeccccC
Confidence            988888    9999999998873   44455565  444444342 25689999999999854    6899999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQD-NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                        ...+   +++|.++|+++|+++|+||+|.. +.+.+. ....+ .          . ..++++|+||.+   +|.|+|
T Consensus       176 --~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~~~-~----------~-~di~~~s~sK~l---~g~~~G  234 (407)
T 2dkj_A          176 --RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGL-HPNPL-P----------Y-AHVVTSTTHKTL---RGPRGG  234 (407)
T ss_dssp             --SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SCCCT-T----------T-CSEEEEESSGGG---CCCSCE
T ss_pred             --CCCC---HHHHHHHHHHcCCEEEEEccccccccccCc-cCCcc-c----------c-ccEEEEeccccC---CCCCce
Confidence              4554   89999999999999999999998 544321 11111 0          1 156688999965   578999


Q ss_pred             EEeeecCC-HHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        250 YSEVINLD-PGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       250 ~v~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      |++   .+ +++++.+......+  ..++..                                  ...++..+++     
T Consensus       235 ~~~---~~~~~~~~~l~~~~~~~~~~~~~~~----------------------------------~~~a~~~al~-----  272 (407)
T 2dkj_A          235 LIL---SNDPELGKRIDKLIFPGIQGGPLEH----------------------------------VIAGKAVAFF-----  272 (407)
T ss_dssp             EEE---ESCHHHHHHHHHHHTTTTCSSCCHH----------------------------------HHHHHHHHHH-----
T ss_pred             EEE---ECCHHHHHHHHhhhcccccCCCcHH----------------------------------HHHHHHHHHH-----
Confidence            998   56 89999887765422  122222                                  1212222211     


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT  405 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~  405 (509)
                          .....+++++++.++++++++.+.|+++ |+++.. +.++.++|++++.          .+. +... +...|.++
T Consensus       273 ----~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~----------~~~-~~~~-~~~~l~~~  335 (407)
T 2dkj_A          273 ----EALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRP----------KGL-TGKE-AEERLDAV  335 (407)
T ss_dssp             ----HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG----------GTC-CHHH-HHHHHHHT
T ss_pred             ----HHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcc----------cCC-CHHH-HHHHHHHc
Confidence                0012347888899999999999999998 888774 3567777876641          011 2333 45566789


Q ss_pred             CeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-
Q psy13922        406 GICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-  484 (509)
Q Consensus       406 gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-  484 (509)
                      ||.+.+|..|.....                            .                ...+        ++|+++. 
T Consensus       336 gi~v~~~~~~~~~~~----------------------------~----------------~~~~--------~iRis~~~  363 (407)
T 2dkj_A          336 GITVNKNAIPFDPKP----------------------------P----------------RVTS--------GIRIGTPA  363 (407)
T ss_dssp             TEECEECCCTTCSSC----------------------------T----------------TTCS--------EEEEECHH
T ss_pred             CceecCCcCcccccc----------------------------c----------------cCCC--------ceeeeccc
Confidence            999999886422000                            0                1112        8999995 


Q ss_pred             -----cChHHHHHHHHHHHHHHHH
Q psy13922        485 -----PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       485 -----~~~~~i~~~~~~l~~~~~~  503 (509)
                           .+++++++++++|++++++
T Consensus       364 ~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          364 ITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             HHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhc
Confidence                 6899999999999999876

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.95  E-value=8.2e-27  Score=236.92  Aligned_cols=303  Identities=13%  Similarity=0.062  Sum_probs=206.7

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe--EEEcCCCChhHH---HHHH
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS---ASLA  122 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~--Vlv~~p~y~~~~---~~~~  122 (509)
                      .|++..+..++++.++++++        .+..++++|+++++..++++++.++|    .  |+++.+.|....   ....
T Consensus        43 ~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~g~~a~~~a~~~~~~~g~----~~vvi~~~~~~~~~~~~~~~~~  110 (359)
T 3pj0_A           43 IYGNGAVIEDFETKIAKILG--------KQSAVFFPSGTMAQQIALRIWADRKE----NRRVAYHPLSHLEIHEQDGLKE  110 (359)
T ss_dssp             BTTBSHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHHHHHT----CCEEEECTTCHHHHSSTTHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHHhcCC----CcEEEEeccceeeehhcchHHH
Confidence            47777888999999999983        22335568888999999999998887    5  445545543322   1224


Q ss_pred             hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        123 EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       123 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      ..|.+++.++.+   ++.+|++.|++. .+     ++++|++++|+||+ |.+++.+++++|+++|++||++||+|++|.
T Consensus       111 ~~g~~~~~v~~~---~~~~d~~~l~~~-~~-----~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~  181 (359)
T 3pj0_A          111 LQQITPLLLGTA---NQLLTIDDIKSL-RE-----PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL  181 (359)
T ss_dssp             HHCCEEEECSCT---TSCCCHHHHHTC-SS-----CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred             hcCceEEecCCc---CCCcCHHHHHhc-cC-----CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            569999998863   358999999887 33     79999999999998 799999999999999999999999999987


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhccc-Ccchhhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAML-CPTVLALV  280 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  280 (509)
                      .+....  ...+...+..       ..+++ +.|+||.+ |.+ .+ ||++   +++++++.+........ ......  
T Consensus       182 ~~~~~~--~~~~~~~~~~-------~~d~~-~~s~sK~~-~~~-~g-g~~~---~~~~l~~~~~~~~~~~~~~~~~~~--  243 (359)
T 3pj0_A          182 WEITPF--YQKSAEEICA-------LFDSV-YVSFYKGI-GGI-AG-AILA---GNDDFVQEAKIWKRRYGGDLISLY--  243 (359)
T ss_dssp             GGGHHH--HTCCHHHHHT-------TCSEE-EEESSSTT-CCS-SC-EEEE---ECHHHHHHHHHHHHHTTCCCSCCH--
T ss_pred             hcchhh--hCCCHHHhhc-------cCCEE-EEeccccC-CCc-ce-EEEE---CCHHHHHHHHHHHHHhCCCcchhH--
Confidence            654211  1122333321       12244 45999998 434 23 7776   79999999987544221 111110  


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                    ..               +.+++. .          ++..   . +..+.+.++++.+.+.|+++|+
T Consensus       244 --------------~~---------------~~a~~~-~----------l~~~---~-~~~~~~~~~~~~l~~~L~~~~g  279 (359)
T 3pj0_A          244 --------------PY---------------ILSADY-Y----------FEKR---I-GKMAEYFEAAKGLAERFNSCSG  279 (359)
T ss_dssp             --------------HH---------------HHHHHH-H----------HHHH---G-GGHHHHHHHHHHHHHHHHTSTT
T ss_pred             --------------HH---------------HHHHHH-H----------HHHH---H-HHhHHHHHHHHHHHHHHhhCCC
Confidence                          00               111111 1          1212   1 2233457778889999999989


Q ss_pred             Ceec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHH
Q psy13922        361 MSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIA  439 (509)
Q Consensus       361 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~  439 (509)
                      +++. .+.++.++|++++.+...           +...+.+.|.++||.++||..|+.                      
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~GV~v~~g~~~~~----------------------  326 (359)
T 3pj0_A          280 VKTVPEVPVSNMFHVYFENSADE-----------IGAILTKIQDETGVGISGYLQEKS----------------------  326 (359)
T ss_dssp             EEEESSSCSSSEEEEEESSCHHH-----------HHHHHHHHHHHHCEECCSCCEEEE----------------------
T ss_pred             ceeeccCCcceEEEEEecCccch-----------hHHHHHHHHHhcCcEecCCccccC----------------------
Confidence            9885 466667777777644311           122246677889999999987665                      


Q ss_pred             HHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-----cChHHHHHHHHHHHHH
Q psy13922        440 KAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-----PQPEKLKAMLEKFREF  500 (509)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-----~~~~~i~~~~~~l~~~  500 (509)
                                                ++.+        ++|+++.     .+.+++++++++|.+.
T Consensus       327 --------------------------~~~~--------~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          327 --------------------------ADVC--------AFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             --------------------------TTEE--------EEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             --------------------------CCce--------EEEEEecCccccCCHHHHHHHHHHHHhc
Confidence                                      3333        8999876     5889999999999875

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.95  E-value=3.7e-26  Score=240.10  Aligned_cols=331  Identities=12%  Similarity=0.105  Sum_probs=219.0

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCC-hhHHHHHHhcCC
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQY-PLYSASLAEFNM  126 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y-~~~~~~~~~~g~  126 (509)
                      .|.+..+..++|++++++++        .+++++|+|+++++..++++++++|     . +++.|+| ..+...+...|+
T Consensus        70 ~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~~~g-----d-i~~~~~~~~~~~~~~~~~G~  135 (456)
T 2ez2_A           70 AYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAIKPG-----Q-YVAGNMYFTTTRYHQEKNGA  135 (456)
T ss_dssp             CSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTT-----C-EEEESSCCHHHHHHHHHTTC
T ss_pred             hcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCC-----C-EeccccccchhHHHHHHcCC
Confidence            48888889999999999983        3489999999999999999997765     2 7889999 777888999999


Q ss_pred             EEEEEecCCC----C----CCCCCHHHHHHHHHhhhccCCceEEEEeCCCC-CCCCCCCHHHHHHHHHHHHHCCcEEEEc
Q psy13922        127 EQIGYYLDES----K----QWGLPISELERSITEARKHCNPRAIVIINPGN-PTGQVLTKENIQDIIKFAHREKLFLFAD  197 (509)
Q Consensus       127 ~~~~v~~~~~----~----~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N-PtG~~~s~~~l~~l~~ia~~~~i~lI~D  197 (509)
                      +++.++.+++    .    +|.+|++.|++.+++..+ .++++|++++|+| |||.+++.+++++|+++|++||+++|+|
T Consensus       136 ~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~-~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D  214 (456)
T 2ez2_A          136 VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA-ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD  214 (456)
T ss_dssp             EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEecccccccccccccccCCCCHHHHHHHHHhccc-cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999988732    1    368899999999986310 0248999999999 9999999999999999999999999999


Q ss_pred             ccCCc----------ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHh
Q psy13922        198 EVYQD----------NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       198 eay~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~  267 (509)
                      |+|..          +.+.+    .++.++....+.   ..+++++ |++|.. | +| ++||++.  .++++++.+...
T Consensus       215 e~~~~g~~~~~~~~~~~~~g----~~~~~~~~~~~~---~~d~~~~-S~kk~~-~-~~-~gG~~~~--~~~~~~~~~~~~  281 (456)
T 2ez2_A          215 ATRCVENAYFIKEQEQGFEN----KSIAEIVHEMFS---YADGCTM-SGKKDC-L-VN-IGGFLCM--NDDEMFSSAKEL  281 (456)
T ss_dssp             CTTHHHHHHHHHHHSTTCTT----SCHHHHHHHHHT---TCSEEEE-ETTTTT-C-CS-SCEEEEE--SCHHHHHHHHHH
T ss_pred             ccccccccccccccccccCC----cchhhhhhhhcc---cCCEEEE-eCcccC-C-CC-ceeEEEE--CCHHHHHHHHHH
Confidence            99986          33432    122211101111   1236666 778876 4 67 7899972  378999888765


Q ss_pred             hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc-hhhcccCCCCCCCCchHHHHHHH-HHHHHHHH
Q psy13922        268 ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT-VMDCVVNPPQPGEPSYEQFSREK-QSVLDSLK  345 (509)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  345 (509)
                      .....+....+           .+....                .++ ++...               +++ +...+..+
T Consensus       282 ~~~~~~~~~~~-----------~~~~~~----------------~~a~a~~~~---------------~~~~~~~~~~~~  319 (456)
T 2ez2_A          282 VVVYEGMPSYG-----------GLAGRD----------------MEAMAIGLR---------------EAMQYEYIEHRV  319 (456)
T ss_dssp             HHHHTCCTTTT-----------TCCHHH----------------HHHHHHHHH---------------HHTCHHHHHHHH
T ss_pred             HhhccCccccc-----------CcchhH----------------HHHHHHHHH---------------HHhHHHHHHHHH
Confidence            43211100000           000000                111 11100               111 23334445


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCC-CHHHHHHHhhcCCCCcHHH-----HHHHHhhcCeEEec-CCCCCCC
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL-PAKAIAKAKAEGKCPSVLY-----AFELLERTGICIVP-GAGFGQV  418 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-----~~~ll~~~gI~v~p-g~~f~~~  418 (509)
                      ++.+.+.+.|++. |+.+..+.+++++|+++.. +.         +.. ...+     ...+++++||.+.+ |..|...
T Consensus       320 ~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~---------~~~-~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~  388 (456)
T 2ez2_A          320 KQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCE---------HLT-QDEFPAQSLAASIYVETGVRSMERGIISAGR  388 (456)
T ss_dssp             HHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTT---------TSC-GGGCHHHHHHHHHHHHHSEECEEESHHHHCB
T ss_pred             HHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcC---------CCC-hhhccHHHHHHHHHHhcCeeeeccccccccc
Confidence            5566777788776 7877778888999976530 00         111 2222     44555788999876 4433210


Q ss_pred             CCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHHHHHHHH
Q psy13922        419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEKLKAMLE  495 (509)
Q Consensus       419 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~i~~~~~  495 (509)
                      .                                              +..+.+..++..++|+++.   .++++++++++
T Consensus       389 ~----------------------------------------------~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~  422 (456)
T 2ez2_A          389 N----------------------------------------------NVTGEHHRPKLETVRLTIPRRVYTYAHMDVVAD  422 (456)
T ss_dssp             C----------------------------------------------TTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHH
T ss_pred             C----------------------------------------------ccccccccCCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            0                                              0000001122338999999   69999999999


Q ss_pred             HHHHHHHHHH
Q psy13922        496 KFREFHEEFL  505 (509)
Q Consensus       496 ~l~~~~~~~~  505 (509)
                      +|++++++..
T Consensus       423 ~l~~~l~~~~  432 (456)
T 2ez2_A          423 GIIKLYQHKE  432 (456)
T ss_dssp             HHHHHHHTGG
T ss_pred             HHHHHHhhhh
Confidence            9999987643

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.95  E-value=5.4e-28  Score=249.48  Aligned_cols=195  Identities=14%  Similarity=0.130  Sum_probs=143.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc------CC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE------DV  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~g  100 (509)
                      |+.+++++.+++....... ..| +.....++++.+++++    |    .++|++|+|+++++..+++.+..      ++
T Consensus        58 ~~~v~~a~~~~~~~~~~~~-~~~-~~~~~~~l~~~la~~~----g----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~  127 (397)
T 2ord_A           58 HPRLVEAIKDQAEKLIHCS-NLF-WNRPQMELAELLSKNT----F----GGKVFFANTGTEANEAAIKIARKYGKKKSEK  127 (397)
T ss_dssp             CHHHHHHHHHHHHHCSCCC-TTS-EEHHHHHHHHHHHHTT----T----SCEEEEESSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHhcccCc-ccc-CCHHHHHHHHHHHHhc----C----CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCC
Confidence            7899999999988732111 113 2223344555555544    4    57999999999999999998864      43


Q ss_pred             -CCCCCeEEEcCCCChhHH-HHHHhcCCE------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922        101 -DGKKPGVLIPIPQYPLYS-ASLAEFNME------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus       101 -d~~~~~Vlv~~p~y~~~~-~~~~~~g~~------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                       +    .|+++.|+|++.. ..+...|.+            ++.++.       .|++.|++.+++     ++++|++++
T Consensus       128 ~~----~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~-----~~~~v~~~~  191 (397)
T 2ord_A          128 KY----RILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSE-----DVCAVFLEP  191 (397)
T ss_dssp             CC----EEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCT-----TEEEEEECS
T ss_pred             Cc----eEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhc-----CeEEEEEec
Confidence             4    8999999997654 366667765            666653       279999998875     799999999


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        167 PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       167 p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      |+||||. +++.+++++|+++|+++|+++|+||+|.++.+.+  ...++..+.  ..     .+++   ||||.+ | +|
T Consensus       192 ~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~~--~~-----~d~~---s~sK~~-~-~G  257 (397)
T 2ord_A          192 IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG--KLFAYQKYG--VV-----PDVL---TTAKGL-G-GG  257 (397)
T ss_dssp             EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS--SSSHHHHHT--CC-----CSEE---EECGGG-G-TT
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc--cchhhhhhC--CC-----CCee---eecccc-C-CC
Confidence            9999999 9999999999999999999999999999876654  223333221  11     1233   779999 6 89


Q ss_pred             CeeEEEeeecCCHHHHHHHH
Q psy13922        246 LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+||++   .+++++ .+.
T Consensus       258 ~r~G~~~---~~~~~~-~l~  273 (397)
T 2ord_A          258 VPIGAVI---VNERAN-VLE  273 (397)
T ss_dssp             SCCEEEE---ECSTTC-CCC
T ss_pred             cCeEEEE---EchHhc-ccC
Confidence            9999998   455555 443

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.95  E-value=3.1e-27  Score=239.95  Aligned_cols=305  Identities=13%  Similarity=0.067  Sum_probs=203.9

Q ss_pred             ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH---HHHh
Q psy13922         47 GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA---SLAE  123 (509)
Q Consensus        47 ~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~---~~~~  123 (509)
                      ..|++..+..++++.++++++        .+..++++|+++++..++++++.++|  ++.|+++.+.|.....   ....
T Consensus        41 ~~y~~~~~~~~l~~~la~~~~--------~~~~i~~~~G~~a~~~al~~~~~~gd--~~~vi~~~~~~~~~~~~~~~~~~  110 (357)
T 3lws_A           41 DQYGTGAIIEPFEQKFADVLG--------MDDAVFFPSGTMAQQVALRIWSDETD--NRTVAYHPLCHLEIHEQDGLKEL  110 (357)
T ss_dssp             EETTEETTHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHHHHHT--CCEEEECTTCHHHHSSTTHHHHH
T ss_pred             ccccCChHHHHHHHHHHHHhC--------CCcEEEecCcHHHHHHHHHHHhhcCC--CcEEEecccceeeeeccchhhhc
Confidence            448877788999999999983        13345557778899999999988876  1145555555443322   3456


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEcccCCc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFLFADEVYQD  202 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~  202 (509)
                      .|++++.++.+   ++.+|++.|++.  .     ++++|++++||||| |.+++.+++++|+++|++||++||+|++|..
T Consensus       111 ~g~~~~~v~~~---~~~~d~~~l~~~--~-----~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~  180 (357)
T 3lws_A          111 HPIETILVGAA---DRLMTLDEIKAL--P-----DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF  180 (357)
T ss_dssp             SSCEEEECSCT---TSCCCHHHHHTC--C-----SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred             cCcEEEEecCC---CCCcCHHHHhcC--c-----CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence            69999988743   347899999876  2     48999999999998 9999999999999999999999999999863


Q ss_pred             ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhccc-Ccchhhhhc
Q psy13922        203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAML-CPTVLALVS  281 (509)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  281 (509)
                      .....  ...+...+..       ..+++ +.|+||.++|+.   .||++   +++++++.+.+...... +.....   
T Consensus       181 ~~~~~--~~~~~~~~~~-------~~d~~-~~s~sK~~~~~~---gg~~~---~~~~~~~~~~~~~~~~~~~~~~~~---  241 (357)
T 3lws_A          181 EMLPY--YEKTAAEIAG-------LFDSI-YISFYKGLGGIA---GAILA---GPAAFCQTARIWKRRYGGDLISLY---  241 (357)
T ss_dssp             HHHHH--HTCCHHHHHT-------TSSEE-EEESSSTTCCSS---CEEEE---ECHHHHHHHHHHHHHTTCCCSCCH---
T ss_pred             hhhhh--cCCChHHHHh-------cCCEE-EEeccccCCCCc---eEEEE---cCHHHHHHHHHHHHHhcCCcccch---
Confidence            21110  0123333321       11244 679999994333   38887   79999999876654221 111110   


Q ss_pred             cccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy13922        282 LPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGM  361 (509)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  361 (509)
                                   ..               +.+++..           ++.+   .+++ +.+.++++.+.+.|+++|++
T Consensus       242 -------------~~---------------~~~~~~~-----------l~~~---~~~~-~~~~~~~~~l~~~L~~~~g~  278 (357)
T 3lws_A          242 -------------PY---------------IVSADYY-----------YELR---KDRM-GQYYEQAKQLAEQFNALPGV  278 (357)
T ss_dssp             -------------HH---------------HHHHHHH-----------HHHH---TTCH-HHHHHHHHHHHHHHHTSTTE
T ss_pred             -------------HH---------------HHHHHHH-----------HHHH---HHHH-HHHHHHHHHHHHHHHhCCCC
Confidence                         00               1111111           1111   2222 23567788899999999899


Q ss_pred             ee-ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHH
Q psy13922        362 SC-NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAK  440 (509)
Q Consensus       362 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~  440 (509)
                      ++ ..+.+++++|++++.+...          +... +.+.|.++||.++||..|.+                       
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~l~~~Gi~v~~g~~~~~-----------------------  324 (357)
T 3lws_A          279 HTTPEVPVSNMFHLHFDGQAAD----------ISPK-LEQVQEETGLGFVGYLVDKD-----------------------  324 (357)
T ss_dssp             EEESSSCSSSEEEEEEESCHHH----------HHHH-HHHHHHHHCEESCSCCEECS-----------------------
T ss_pred             eeccCCCcceEEEEEecCChHH----------HHHH-HHHHHHhcCeEEecccccCC-----------------------
Confidence            88 3566777889877632100          1223 45677889999999854332                       


Q ss_pred             HhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-----cChHHHHHHHHHHHHHH
Q psy13922        441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-----PQPEKLKAMLEKFREFH  501 (509)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-----~~~~~i~~~~~~l~~~~  501 (509)
                                                +        ..++|+++.     .+.++|++++++|.+++
T Consensus       325 --------------------------~--------~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          325 --------------------------G--------YCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             --------------------------S--------EEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             --------------------------C--------ceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence                                      2        228888876     58899999999998765

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=6.6e-28  Score=248.48  Aligned_cols=342  Identities=11%  Similarity=0.040  Sum_probs=204.0

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCCc----chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSP----GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-   97 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~----g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-   97 (509)
                      +...|+.+++++.+.+..........|....    ...++++.+++++    |  +++++|++|+|+++++..+++++. 
T Consensus        29 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~~~~~v~~~~g~t~al~~~~~~l~~  102 (400)
T 3vax_A           29 TTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV----S--AEPDELIFTSGATESNNIALLGLAP  102 (400)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT----T--CCGGGEEEESCHHHHHHHHHHTTHH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc----C--CCCCcEEEeCCHHHHHHHHHHHHHH
Confidence            3456889999999988753211111122222    2344555555554    5  457899999999999999999997 


Q ss_pred             ---cCCCCCCC-eEEEcCCCChhHHHHHHh---cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         98 ---EDVDGKKP-GVLIPIPQYPLYSASLAE---FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        98 ---~~gd~~~~-~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                         ++|    + .|+++.++|.++...+..   .|++++.++.++  ++.+|++.|++.+++     ++++|++++|+||
T Consensus       103 ~~~~~g----d~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~-----~~~~v~~~~~~np  171 (400)
T 3vax_A          103 YGERTG----RRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRP-----DTLLVSLMHVNNE  171 (400)
T ss_dssp             HHHHHT----CCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCT-----TEEEEECCSBCTT
T ss_pred             hhccCC----CCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCC-----CceEEEEECCCCC
Confidence               665    4 799999999987665554   699999999875  357899999999876     7999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||.+++   +++|.++|+++|+++|+|++|.....     ...+...           ..+++.|+||.+ |++|+++++
T Consensus       172 tG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~~~~-----------~d~~~~s~~K~~-g~~g~g~~~  231 (400)
T 3vax_A          172 TGVIQP---VAELAQQLRATPTYLHVDAAQGYGKV-----PGDLTTP-----------IDMISISGHKIG-APKGVGALV  231 (400)
T ss_dssp             TCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTS-----GGGGGSC-----------CSEEEEETGGGT-SCSSCEEEE
T ss_pred             ceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCC-----CcChhhc-----------CcEEEEeHHHhC-CCCceEEEE
Confidence            999988   78999999999999999999985321     1111110           135677999987 666765555


Q ss_pred             EeeecCCHHHH---HHHHHhhh--------cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcc
Q psy13922        251 SEVINLDPGVK---AMLHKSIS--------AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV  319 (509)
Q Consensus       251 v~~~~~~~~~~---~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  319 (509)
                      + +  .++.+.   ..+.....        ....++..                                  .+.++..+
T Consensus       232 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~a  274 (400)
T 3vax_A          232 T-R--RREEMDDERVPLEPIMFGGGQERKLRPGTLPVP----------------------------------LIMGLAEA  274 (400)
T ss_dssp             E-C--BCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHH----------------------------------HHHHHHHH
T ss_pred             E-e--cchhccccccccCceecCCCceeeeecCCCCHH----------------------------------HHHHHHHH
Confidence            1 2  442221   11111100        01112222                                  33333332


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCc---eeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG---AMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                      +          +...++++++++.++++++++.+.|+ .+++.+..+.+   +.++++.+.            +. +.+.
T Consensus       275 l----------~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~  330 (400)
T 3vax_A          275 A----------KIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFE------------DV-DAEA  330 (400)
T ss_dssp             H----------HHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECT------------TC-CHHH
T ss_pred             H----------HHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeC------------CC-CHHH
Confidence            2          22233478899999999999999999 88998876654   234444343            21 2344


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      + ...|. +||.+++|..|....                          ..|+     ..+...|+......+       
T Consensus       331 l-~~~L~-~gi~v~~g~~~~~~~--------------------------~~~~-----~~~~~~g~~~~~~~~-------  370 (400)
T 3vax_A          331 F-LVTLK-DLVAVATGSASTSAS--------------------------FTPS-----HVLRAMGLPEEAASK-------  370 (400)
T ss_dssp             H-HHHHH-HHHHHTTTTEEEEEE--------------------------ECCH-----HHHHTTTCCHHHHTS-------
T ss_pred             H-HHHHh-cCcEEEecccccCCC--------------------------CCcc-----HHHHHcCCCccccCc-------
Confidence            3 45555 899999998765410                          0000     000000000000012       


Q ss_pred             eeEEEEe-e--cChHHHHHHHHHHHHHHHH
Q psy13922        477 YHFRTTI-L--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       477 ~~~Rls~-~--~~~~~i~~~~~~l~~~~~~  503 (509)
                       ++||++ .  .+++++++++++|++++++
T Consensus       371 -~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          371 -SLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             -EEEEEEEEC--------------------
T ss_pred             -eEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence             999999 5  7889999999999988754

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.95  E-value=9.3e-27  Score=235.39  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=149.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      ++.+++++.+...    .. ..|.+..+..++|++++++++        .+++++++|+++++..+++++.++||    +
T Consensus        17 ~~~~~~a~~~~~~----~~-~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~~~~~~~~~gd----~   79 (347)
T 1jg8_A           17 TEEMRKAMAQAEV----GD-DVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVSIMAHTQRGD----E   79 (347)
T ss_dssp             CHHHHHHHHTCCC----CC-GGGTCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCCTTC----E
T ss_pred             CHHHHHHHhcCCC----CC-cccCCChHHHHHHHHHHHHhC--------CceEEEecCcHHHHHHHHHHhcCCCC----E
Confidence            4566666654321    12 248888888999999999983        24678888889999999999999988    9


Q ss_pred             EEEcCCCChhHH---HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh-ccCCceEEEEeCCCCCC-CCCCCHHHHH
Q psy13922        107 VLIPIPQYPLYS---ASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAIVIINPGNPT-GQVLTKENIQ  181 (509)
Q Consensus       107 Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~-~~~~~~~ivi~~p~NPt-G~~~s~~~l~  181 (509)
                      |+++.|+|....   ..+...|++++.+ .++  ++.+|++.|++.+++.. ..+++++|++++||||| |.+++.++++
T Consensus        80 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~  156 (347)
T 1jg8_A           80 VILEADSHIFWYEVGAMAVLSGVMPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK  156 (347)
T ss_dssp             EEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred             EEEcCcchhhhccccchhhccCeEEEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHH
Confidence            999999987643   2567789999988 433  34689999999886410 00158999999999999 9999999999


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|+++|+++|+++|+|++|..+....  ...+...+...       .+.+++ |+||.+ |.+   +|++++  .+++++
T Consensus       157 ~i~~~a~~~~~~li~D~a~~~~~~~~--~~~~~~~~~~~-------~d~~~~-s~sK~l-~~~---~G~~~~--~~~~~~  220 (347)
T 1jg8_A          157 EICTIAKEHGINVHIDGARIFNASIA--SGVPVKEYAGY-------ADSVMF-CLSKGL-CAP---VGSVVV--GDRDFI  220 (347)
T ss_dssp             HHHHHHHHHTCEEEEEETTHHHHHHH--HCCCHHHHHHT-------CSEEEE-ESSSTT-CCS---SCEEEE--ECHHHH
T ss_pred             HHHHHHHHCCCEEEeehhhhhcchhh--cCCChHHhccc-------ccEEEE-eccccc-CCC---ceEEEE--cCHHHH
Confidence            99999999999999999875322110  01122332211       124444 899999 532   564332  688898


Q ss_pred             HHHHHhhh
Q psy13922        262 AMLHKSIS  269 (509)
Q Consensus       262 ~~l~~~~~  269 (509)
                      +.+...+.
T Consensus       221 ~~~~~~~~  228 (347)
T 1jg8_A          221 ERARKARK  228 (347)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876554

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.95  E-value=1.2e-26  Score=237.95  Aligned_cols=200  Identities=16%  Similarity=0.101  Sum_probs=147.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      +++.+|+.+++++.    .        |.   +...+++.+++++.+.+|.+ +++++++|+|+++++..+++++  +||
T Consensus        38 ~~~~~~~~v~~a~~----~--------~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~~~~~~~~--~gd   99 (374)
T 2aeu_A           38 GGFLIDEKDKALLN----T--------YI---GSSYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAILATILAL--KPK   99 (374)
T ss_dssp             CCCCCCHHHHHHHT----S--------TT---HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHH--CCS
T ss_pred             CCCCCCHHHHHHHH----H--------hc---CchHHHHHHHHHHHHHhCCC-CcceEEEEcChHHHHHHHHHhC--CCC
Confidence            46677889988884    1        21   11334566666665555643 3578999999999999999988  888


Q ss_pred             CCCCeEEEcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceE-EEEeCCCCCCCCCCCH
Q psy13922        102 GKKPGVLIPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRA-IVIINPGNPTGQVLTK  177 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~-ivi~~p~NPtG~~~s~  177 (509)
                          +|+++.|+|+++..   .++..|++++.+         .|++.|++. ++     ++++ |++++||||||.  +.
T Consensus       100 ----~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~-----~~~~~v~~~~p~nptG~--~~  158 (374)
T 2aeu_A          100 ----KVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-ID-----KDTLVIITGSTMDLKVI--EL  158 (374)
T ss_dssp             ----EEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CC-----TTEEEEEECBCTTSCBC--CH
T ss_pred             ----EEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CC-----CccEEEEEccCCCCCCC--Cc
Confidence                99999998776433   677789999887         178888877 33     7999 889999999997  77


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      .++++|.++|+++|+++|+||+|..+...+. ...+....    +.      .++++|+||.+   +|+|+||++   .+
T Consensus       159 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~----~~------di~~~S~sK~l---~g~~~G~~~---~~  221 (374)
T 2aeu_A          159 ENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPALKL----GA------DLVVTSTDKLM---EGPRGGLLA---GK  221 (374)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHHHH----TC------SEEEEETTSSS---SSCSCEEEE---EE
T ss_pred             ccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcccc----CC------cEEEecCcccc---cCcceEEEE---EC
Confidence            8999999999999999999999988642111 01112221    11      46678999986   468999998   68


Q ss_pred             HHHHHHHHHhhhcc-cCcchh
Q psy13922        258 PGVKAMLHKSISAM-LCPTVL  277 (509)
Q Consensus       258 ~~~~~~l~~~~~~~-~~~~~~  277 (509)
                      +++++.+......+ .+++.+
T Consensus       222 ~~~~~~l~~~~~~~~~~~~~~  242 (374)
T 2aeu_A          222 KELVDKIYIEGTKFGLEAQPP  242 (374)
T ss_dssp             HHHHHHHHHHHHTTTCBCCHH
T ss_pred             HHHHHHHHHhhccccCCCCHH
Confidence            89999988766533 234444

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.95  E-value=2.7e-27  Score=241.93  Aligned_cols=306  Identities=12%  Similarity=0.096  Sum_probs=213.2

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH---hh---cC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL---LI---ED   99 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~---~~   99 (509)
                      .|+.+.+++.+.+.... .....|+ ..+..++++++++++    |.   +++|++|+|+++++..+++.   +.   ++
T Consensus        45 ~~~~v~~a~~~~~~~~~-~~~~~y~-~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~  115 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKLL-HVSNLYE-NPWQEELAHKLVKHF----WT---EGKVFFANSGTESVEAAIKLARKYWRDKGK  115 (375)
T ss_dssp             SCHHHHHHHHHHHHHCS-CCCTTBC-CHHHHHHHHHHHHTS----SS---CEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcc-ccCcccC-CHHHHHHHHHHHhhc----CC---CCeEEEeCchHHHHHHHHHHHHHHhccCCC
Confidence            46899999999987632 1223474 567788999999886    43   38999999999999999975   34   56


Q ss_pred             C-CCCCCeEEEcCCCChhHHHHHHhcCCE-------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922        100 V-DGKKPGVLIPIPQYPLYSASLAEFNME-------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus       100 g-d~~~~~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                      | |    .|+++.|+|+++...+...+..             +..++       ..|++.|++.+++     ++++|+++
T Consensus       116 g~~----~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~-----~~~~v~~~  179 (375)
T 2eh6_A          116 NKW----KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK-------LNDIDSVYKLLDE-----ETAGIIIE  179 (375)
T ss_dssp             CCC----EEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC-------TTCHHHHHTTCCT-----TEEEEEEC
T ss_pred             CCC----EEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC-------CchHHHHHHHhcC-----CeEEEEEe
Confidence            6 6    9999999999887665554322             22222       1489999988875     79999999


Q ss_pred             CCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        166 NPGNPTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       166 ~p~NPtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      +|+||||.+ .+++++++|+++|+++|+++|+||+|.+|...+.  ..++..    .+.   ..+++   ||||.+ | +
T Consensus       180 ~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~----~~~---~~d~~---s~SK~~-~-~  245 (375)
T 2eh6_A          180 VIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE--FYAYQH----FNL---KPDVI---ALAKGL-G-G  245 (375)
T ss_dssp             SEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG----GTC---CCSEE---EECGGG-G-T
T ss_pred             CccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--chhhhh----cCC---CCCEE---EEcccc-c-C
Confidence            999999998 5689999999999999999999999998755431  112211    110   12244   788999 6 7


Q ss_pred             CCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCC
Q psy13922        245 GLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPP  323 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  323 (509)
                      |+|+||++   .++++++.+..... ...+.+.+                                  .+.++..+++  
T Consensus       246 g~~~G~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~--  286 (375)
T 2eh6_A          246 GVPIGAIL---AREEVAQSFTPGSHGSTFGGNPL----------------------------------ACRAGTVVVD--  286 (375)
T ss_dssp             TSCCEEEE---EEHHHHTTCCTTSCCCSSTTCHH----------------------------------HHHHHHHHHH--
T ss_pred             CCCeEEEE---EcHHHHhhhcCCCCCCCCCCCHH----------------------------------HHHHHHHHHH--
Confidence            99999998   57777776654211 12223333                                  3333222221  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHh
Q psy13922        324 QPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLE  403 (509)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~  403 (509)
                               .   .++.++.++++++.+.+.|++++ ....++ .+.++|++++.              +...+...+ .
T Consensus       287 ---------~---~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~-~g~~~~~~~~~--------------~~~~~~~~l-~  337 (375)
T 2eh6_A          287 ---------E---VEKLLPHVREVGNYFKEKLKELG-KGKVKG-RGLMLGLELER--------------ECKDYVLKA-L  337 (375)
T ss_dssp             ---------H---HHHHHHHHHHHHHHHHHHHHHTT-SSEEEE-ETTEEEEECSS--------------CCHHHHHHH-H
T ss_pred             ---------H---HHHHHHHHHHHHHHHHHHHHHHh-cCCceE-EEEEEEEEEcC--------------cHHHHHHHH-H
Confidence                     1   22667788888899999998874 333333 45677766641              234444444 4


Q ss_pred             hcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe
Q psy13922        404 RTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI  483 (509)
Q Consensus       404 ~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~  483 (509)
                      ++||.+.|+.                                                    ++          ++|+++
T Consensus       338 ~~gi~~~~~~----------------------------------------------------~~----------~iRi~~  355 (375)
T 2eh6_A          338 EKGLLINCTA----------------------------------------------------GK----------VLRFLP  355 (375)
T ss_dssp             HTTEECEEET----------------------------------------------------TT----------EEEECC
T ss_pred             HCCCEEecCC----------------------------------------------------CC----------EEEEEC
Confidence            6899998742                                                    22          899996


Q ss_pred             e--cChHHHHHHHHHHHHH
Q psy13922        484 L--PQPEKLKAMLEKFREF  500 (509)
Q Consensus       484 ~--~~~~~i~~~~~~l~~~  500 (509)
                      .  .+++++++++++|+++
T Consensus       356 ~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          356 PLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             CTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            5  7999999999999875

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.95  E-value=1.6e-27  Score=242.00  Aligned_cols=337  Identities=12%  Similarity=0.082  Sum_probs=214.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC---CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCH-HHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD---SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGA-SDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~-~~al~~~~~~l~   97 (509)
                      |++..|+.+++++.+.+.+......+.|..   ..+..++.+++.+.+.+.+|.. ++++|++|+|+ ++++..++..+.
T Consensus        10 g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~~~~l~   88 (360)
T 1w23_A           10 GPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLPMNLL   88 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHC
T ss_pred             CCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHHHHHhc
Confidence            556788999999998886521111111222   3344445555555555555653 45799999999 999999999998


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHH-HHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER-SITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~-~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      .+++ +++.|+++.++|.. ...++..| +++.++.+++.+ .+|++.|++ .+++     ++++|++++|+||||.+++
T Consensus        89 ~~~~-~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~-~~d~~~l~~~~i~~-----~~k~v~~~~~~nptG~~~~  159 (360)
T 1w23_A           89 TKGT-IGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANS-YQSIPDFSEFQLNE-----NDAYLHITSNNTIYGTQYQ  159 (360)
T ss_dssp             CTTC-EEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGT-SCSCCCGGGCCCCT-----TEEEEEEESEETTTTEECS
T ss_pred             CCCC-cccEEEecchhHHH-HHHHHHhC-CeEEeecccccC-cCCccchHhhccCC-----CCCEEEEeCCCCCcceecc
Confidence            7653 22367777666654 34467789 999999875322 378888888 7754     7999999999999999987


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                        ++.+      ++|+++|+|++|..+...     .++.    +       . .++++|+||.+ |++|  +||++   .
T Consensus       160 --~i~~------~~~~~li~D~a~~~~~~~-----~~~~----~-------~-di~~~s~sK~~-~~~G--~G~~~---~  208 (360)
T 1w23_A          160 --NFPE------INHAPLIADMSSDILSRP-----LKVN----Q-------F-GMIYAGAQKNL-GPSG--VTVVI---V  208 (360)
T ss_dssp             --SCCC------CCSSCEEEECTTTTTSSC-----CCGG----G-------C-SEEEEETTTTT-SCTT--CEEEE---E
T ss_pred             --cccc------cCCceEEEechhhcCCCC-----cCcc----c-------C-CEEEEEccccc-CCCC--cEEEE---E
Confidence              3332      799999999999875421     1211    1       1 24577999999 6666  89998   5


Q ss_pred             CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH-
Q psy13922        257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR-  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~-  335 (509)
                      ++++++++..... +. .+..                   .........++....++.++..+++          ...+ 
T Consensus       209 ~~~~~~~~~~~~~-~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~  257 (360)
T 1w23_A          209 KKDLLNTKVEQVP-TM-LQYA-------------------THIKSDSLYNTPPTFSIYMLRNVLD----------WIKDL  257 (360)
T ss_dssp             EHHHHCSCCTTCC-GG-GCHH-------------------HHHHTTTCSSCCCHHHHHHHHHHHH----------HHHHT
T ss_pred             cHHHHhhcccCCc-ch-hhhh-------------------hhhhccCCCCCCCHHHHHHHHHHHH----------HHHHh
Confidence            7777665543210 00 0000                   0000000001111112333333321          1111 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCC-eec-cC--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        336 -EKQSVLDSLKQRAKMVADTFNSIEGM-SCN-PV--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       336 -~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                       +++++++.++++++.+.+.|++++++ ... .+  .+++++|++++-..            +..++. ..|.++||.+.
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~l~~~gi~~~  324 (360)
T 1w23_A          258 GGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------------LNQQFL-AKAKEQGFVGL  324 (360)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------------HHHHHH-HHHHHTTEESC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCc------------cHHHHH-HHHHHCCeeee
Confidence             36788899999999999999998655 543 23  35668887664110            123333 34667899998


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPE  488 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~  488 (509)
                      ||..+                                                  ++          ++|+++.  ++++
T Consensus       325 ~~~~~--------------------------------------------------~~----------~iRis~~~~~~~~  344 (360)
T 1w23_A          325 NGHRS--------------------------------------------------VG----------GCRASIYNAVPID  344 (360)
T ss_dssp             BCCTT--------------------------------------------------TC----------SEEEECCTTSCHH
T ss_pred             cCCCC--------------------------------------------------CC----------eEEEEecCCCCHH
Confidence            76632                                                  12          8999998  6899


Q ss_pred             HHHHHHHHHHHHHHH
Q psy13922        489 KLKAMLEKFREFHEE  503 (509)
Q Consensus       489 ~i~~~~~~l~~~~~~  503 (509)
                      ++++++++|++++++
T Consensus       345 ~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          345 ACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.95  E-value=1.1e-26  Score=240.09  Aligned_cols=296  Identities=16%  Similarity=0.116  Sum_probs=202.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      +.|.+|+.+++++.+.+..   .   .|.+..+..+++++++++++        .+++++++|+++++..+++++ .++|
T Consensus        38 ~~~~~~~~v~~a~~~~~~~---~---~y~~~~~~~~l~~~la~~~~--------~~~~v~~~~Gt~a~~~~l~~~~~~~g  103 (399)
T 2oga_A           38 AYEELRAETDAAIARVLDS---G---RYLLGPELEGFEAEFAAYCE--------TDHAVGVNSGMDALQLALRGLGIGPG  103 (399)
T ss_dssp             HHHHTHHHHHHHHHHHHHH---T---CCSSSHHHHHHHHHHHHHTT--------SSEEEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCHHHHHHHHHHHhc---C---CCCCchhHHHHHHHHHHHHC--------CCeEEEecCHHHHHHHHHHHhCCCCc
Confidence            4555678899999888876   2   37667888999999999983        126788888899999999999 7888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++.|+|.++...++..|.+++.++.+++ ++.+|++.|++.+++     ++++|+   |+||||...+   +
T Consensus       104 d----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~-----~~~~v~---~~n~tG~~~~---l  167 (399)
T 2oga_A          104 D----EVIVPSHTYIASWLAVSATGATPVPVEPHED-HPTLDPLLVEKAITP-----RTRALL---PVHLYGHPAD---M  167 (399)
T ss_dssp             C----EEEEESSSCTHHHHHHHHTTCEEEEECBCSS-SSSBCHHHHHHHCCT-----TEEEEC---CBCGGGCCCC---H
T ss_pred             C----EEEECCCccHHHHHHHHHCCCEEEEEecCCC-CCCcCHHHHHHhcCC-----CCeEEE---EeCCcCCccC---H
Confidence            7    9999999999999999999999999998753 468999999999876     688777   5789999877   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCCH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++|.++|+++|+++|+|++|..+.....   ..+..+          . .+++.|+  ||.+ |.+| |+||++.  .++
T Consensus       168 ~~i~~l~~~~~~~li~Dea~~~g~~~~~---~~~~~~----------~-di~~~S~~~sK~~-~~~G-~~g~~~~--~~~  229 (399)
T 2oga_A          168 DALRELADRHGLHIVEDAAQAHGARYRG---RRIGAG----------S-SVAAFSFYPGKNL-GCFG-DGGAVVT--GDP  229 (399)
T ss_dssp             HHHHHHHHHHTCEECEECTTCTTCEETT---EETTCT----------T-CEEEEECCTTSSS-CCSS-CCEEEEE--SCH
T ss_pred             HHHHHHHHHcCCEEEEECcccccCccCC---eecccc----------c-CEEEEeCCCCccC-CcCC-ceEEEEe--CCH
Confidence            9999999999999999999987642211   111000          1 3556688  7999 7679 9999973  468


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      ++++.+......... ....    ..... ..+.-...               ..+++...              .++++
T Consensus       230 ~~~~~l~~~~~~g~~-~~~~----~~~~g-~~~~~~~~---------------~~a~~~~~--------------l~~~~  274 (399)
T 2oga_A          230 ELAERLRMLRNYGSR-QKYS----HETKG-TNSRLDEM---------------QAAVLRIR--------------LAHLD  274 (399)
T ss_dssp             HHHHHHHHHHBTTCS-STTC----CCSCC-CBCCCCHH---------------HHHHHHHH--------------HHTHH
T ss_pred             HHHHHHHHHHhcCcc-cccc----ccccc-cCCCcCHH---------------HHHHHHHH--------------HHHHH
Confidence            999888765442110 0000    00000 00000000               11111111              12244


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      ...+..+++.+.+.+.|.++|++++. .+.++.++|+.+.++          + .+... +...|.++||.+.++
T Consensus       275 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~----------~-~~~~~-l~~~L~~~gI~v~~~  337 (399)
T 2oga_A          275 SWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVR----------T-ERRDE-LRSHLDARGIDTLTH  337 (399)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEE----------C-SSHHH-HHHHHHHTTBCCBCS
T ss_pred             HHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEE----------C-CCHHH-HHHHHHHCCCceecC
Confidence            55566677788899999988888764 345556665433321          1 12333 345566789999874

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.95  E-value=3.7e-26  Score=244.19  Aligned_cols=349  Identities=12%  Similarity=0.066  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE--EEeCCHHHHHHHHHHHhhcCCC----
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV--ILSAGASDGIKSVLKLLIEDVD----  101 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~~gd----  101 (509)
                      +.+.+.+.+++..........|....+..++++++++++.+.+|.+.+++++  ++|+|+++++..+++++++++.    
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g  189 (514)
T 3mad_A          110 EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG  189 (514)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC
Confidence            4444555555443222223335556677889999999998888866655778  9999999999999999987650    


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                      ..++.|+++.|+|.++...++..|.+++.++.++  ++.+|++.|++++++     ++++|++++|+||||.+.+   ++
T Consensus       190 ~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~-----~~~~v~~~~~~nptG~~~~---l~  259 (514)
T 3mad_A          190 ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITP-----NTVVVAGSAPGYPHGVVDP---IP  259 (514)
T ss_dssp             CSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCT-----TEEEEEEETTCTTTCCCCC---HH
T ss_pred             CCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhcc-----CCEEEEEeCCCCCCccccC---HH
Confidence            0113999999999999999999999999999876  468999999999987     7999999999999999987   88


Q ss_pred             HHHHHHHHCCcEEEEcccCCccccc--C--CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYA--E--GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +|.++|++||+++|+|++|.++.+.  .  +.....+.       ....+. .+++.|++|.+.  +|.++|++++  .+
T Consensus       260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~-------~~~~g~-d~~~~s~~K~l~--~~~~~g~~~~--~~  327 (514)
T 3mad_A          260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD-------FRLEGV-TSVSADTHKYGY--GAKGTSVILY--RR  327 (514)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS-------TTSTTC-CEEEECTTTTTC--CCSSCEEEEE--SS
T ss_pred             HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc-------ccCCCC-cEEEECchhccC--CCCCeEEEEE--eC
Confidence            9999999999999999999987541  0  00000110       001122 344569999963  6788999974  55


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +.+..........+......          ...+.             +........++..++.         .-...++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~----------~~~~~-------------gs~~~~~~~a~~aal~---------~l~~~~~  375 (514)
T 3mad_A          328 PDLLHYQYFIAADWPGGLYF----------SPTFA-------------GSRPGALSATAWAAML---------SLGEEGY  375 (514)
T ss_dssp             HHHHTTTCEEESSCTTCSEE----------ESSSC-------------SSCCHHHHHHHHHHHH---------HHHHHHH
T ss_pred             HHHhccccccccccCCCccc----------CCccC-------------CCCchHHHHHHHHHHH---------HHhHHHH
Confidence            54433211101001000000          00000             0000000111111111         0012236


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      +++.+.+.++++++.+.|++++++++..+..+ ++|+...            +. +..+ +.+.|.++||.+ +|..|..
T Consensus       376 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~------------~~-~~~~-l~~~L~~~Gi~v-~g~~~~~  439 (514)
T 3mad_A          376 LDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASD------------EL-NIYQ-VMEEMAGRGWRL-NGLHRPP  439 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECS------------SS-CHHH-HHHHHHTTTCBC-EEETTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCC------------CC-CHHH-HHHHHHhcCCEe-ccCCCCC
Confidence            78888899999999999999989988766655 4454332            11 2334 345556679987 4432222


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEKLKAML  494 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~i~~~~  494 (509)
                                                                                  ++|+++.   .+++++++++
T Consensus       440 ------------------------------------------------------------~~Ri~~~~~~~~~e~i~~~l  459 (514)
T 3mad_A          440 ------------------------------------------------------------AFHVALTLRHTEPGVVDRFL  459 (514)
T ss_dssp             ------------------------------------------------------------EEEEECCGGGGSTTHHHHHH
T ss_pred             ------------------------------------------------------------eEEEEEecCCCCHHHHHHHH
Confidence                                                                        7888887   4669999999


Q ss_pred             HHHHHHHHHHHh
Q psy13922        495 EKFREFHEEFLA  506 (509)
Q Consensus       495 ~~l~~~~~~~~~  506 (509)
                      ++|++++++..+
T Consensus       460 ~~L~~~l~~~~~  471 (514)
T 3mad_A          460 ADLQDAVAQVRA  471 (514)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.95  E-value=9e-27  Score=235.85  Aligned_cols=325  Identities=13%  Similarity=0.099  Sum_probs=219.1

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..    ....|++.....++++.+++++    |   ...+|++|+|+++++..++++++++||    
T Consensus        20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~~~~~gt~a~~~al~~~~~~gd----   84 (356)
T 1v72_A           20 ASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAANALCLSAMTPPWG----   84 (356)
T ss_dssp             CCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHHHHHHHTSCCTTE----
T ss_pred             CCHHHHHHHHhhccC----cccccccchHHHHHHHHHHHHh----C---CCCcEEEeCCccHHHHHHHHHhcCCCC----
Confidence            368888888777532    2234765555566777777666    5   244699999999999999999988888    


Q ss_pred             eEEEcCCCChhHHHH--HHhc--CCEEEEEecCCCCCCCCCHHHHHH-HHHhhh--ccCCceEEEEeCCCCCCCCCCCHH
Q psy13922        106 GVLIPIPQYPLYSAS--LAEF--NMEQIGYYLDESKQWGLPISELER-SITEAR--KHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~~~L~~-~i~~~~--~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      .|+++.|+|..+...  +...  |.+++.++.+.   +.+|++.|++ .+++..  ...++++|++++|+| ||.+++.+
T Consensus        85 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~  160 (356)
T 1v72_A           85 NIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA---AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLD  160 (356)
T ss_dssp             EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGG---GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHH
T ss_pred             EEEEcCccchhhhhchHHHHHhCCcEEEEecCCC---CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHH
Confidence            999999999876655  6777  99999988752   5899999998 886410  112578999999987 99999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCccccc-CCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYA-EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      ++++|+++|++||+++|+|++|..+... .+... ....+  +.     ..+++++ |+||.  |. .+..||++   .+
T Consensus       161 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~--~~-----~~d~~~~-s~sK~--g~-~~G~g~~~---~~  225 (356)
T 1v72_A          161 EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTW--KA-----GVDALSF-GATKN--GV-LAAEAIVL---FN  225 (356)
T ss_dssp             HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTG--GG-----TCCEEEE-CCGGG--TC-SSCEEEEE---SS
T ss_pred             HHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhh--hh-----cCCEEEE-ecccC--CC-cCccEEEE---EC
Confidence            9999999999999999999999765321 01011 10000  00     1235544 89997  32 23334776   68


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +++++.+.............+..                               +..+....++     +   .    ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~l~-----~---~----~~  262 (356)
T 1v72_A          226 TSLATEMSYRRKRAGHLSSKMRF-------------------------------LSAQIDAYLT-----D---D----LW  262 (356)
T ss_dssp             GGGHHHHHHHHHHTTCCCSSTHH-------------------------------HHHHHHHHTS-----T---T----HH
T ss_pred             HHHHhhHHHHhhccCchhhhHHH-------------------------------HHHHHHHHHH-----h---h----hH
Confidence            88888876553311111110000                               1111111111     0   0    12


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ....+.++++++++.+.|++++|+++..+.+++++|++++  .               . +...|.++||.+.||. |+.
T Consensus       263 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~---------------~-~~~~l~~~gi~v~~g~-~~~  323 (356)
T 1v72_A          263 LRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--S---------------A-MIDALLKAGFGFYHDR-WGP  323 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--H---------------H-HHHHHHHTTCBCBCSS-SST
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC--H---------------H-HHHHHHhcCeEEeccc-cCC
Confidence            3445667888899999999888888876777888887653  1               2 2344567799999876 321


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLE  495 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~  495 (509)
                                                                       +          ++|+++.  +++++++++++
T Consensus       324 -------------------------------------------------~----------~iRi~~~~~~~~~~i~~~~~  344 (356)
T 1v72_A          324 -------------------------------------------------N----------VVRFVTSFATTAEDVDHLLN  344 (356)
T ss_dssp             -------------------------------------------------T----------EEEEECCTTCCHHHHHHHHH
T ss_pred             -------------------------------------------------C----------eEEEEecCCCCHHHHHHHHH
Confidence                                                             1          8999976  68999999999


Q ss_pred             HHHHHHHHHH
Q psy13922        496 KFREFHEEFL  505 (509)
Q Consensus       496 ~l~~~~~~~~  505 (509)
                      +|++++++..
T Consensus       345 ~l~~~l~~~~  354 (356)
T 1v72_A          345 QVRLAADRTQ  354 (356)
T ss_dssp             HHHHTC----
T ss_pred             HHHHHHHhhc
Confidence            9999887654

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.95  E-value=3e-26  Score=241.44  Aligned_cols=346  Identities=10%  Similarity=-0.012  Sum_probs=221.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      |+.+++++.+++.+..   .. |....+..++++++++.+.+.++  ...++|++|+|+++|+..+++.++..    |.+
T Consensus        69 ~p~v~~A~~~~~~~~~---~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~  142 (460)
T 3gju_A           69 RQKIADAIATQAKNLA---YY-HAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRP  142 (460)
T ss_dssp             CHHHHHHHHHHHHHHS---CC-CCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhcc---cc-ccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            7899999999988732   11 33334445667777777766543  45679999999999999999998751    111


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCC--C-CCCCCC--------HHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDE--S-KQWGLP--------ISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d--------~~~L~~~i~~~~~~~~  158 (509)
                      .++.|++..|+|+++...+...+.             .+..++...  . +.++.+        ++.|++.+++... .+
T Consensus       143 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~-~~  221 (460)
T 3gju_A          143 EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGP-ET  221 (460)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCG-GG
T ss_pred             CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCC-CC
Confidence            234999999999987765544321             234444221  1 112334        5888888874211 15


Q ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +++|+++.++|++|. +++++++++|.++|++||+++|+||+|.+|...+.  .......  ++.+     +   +.+||
T Consensus       222 ~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~~~~--~~~p-----d---i~t~s  289 (460)
T 3gju_A          222 IAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT--MFGSDHY--GIKP-----D---LITIA  289 (460)
T ss_dssp             EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHHH--TCCC-----S---EEEEC
T ss_pred             EEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchHhhc--CCCC-----C---eeeee
Confidence            777778777888887 77889999999999999999999999999876542  2222221  2211     1   33789


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHHHh-------h-hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccC
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLHKS-------I-SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG  308 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (509)
                      |.+ | +| +|+||++   +++++++.+...       . ..+++.+.+++.+                           
T Consensus       290 K~l-~-gG~~~lg~v~---~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aa---------------------------  337 (460)
T 3gju_A          290 KGL-T-SAYAPLSGVI---VADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA---------------------------  337 (460)
T ss_dssp             GGG-T-TTSSCCEEEE---EEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHH---------------------------
T ss_pred             hhh-c-CCCCCeEEEE---ECHHHHHHHhcccccccccccCCCCCCCHHHHHH---------------------------
Confidence            999 4 56 8999998   799999998642       1 1234455552222                           


Q ss_pred             cccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhh
Q psy13922        309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       309 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                         +.+++..+.+            .+.++++++....+++.+.+.+.+.|.+..+.+.|.++ ++++.....     .+
T Consensus       338 ---a~aal~~~~~------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~-----~~  396 (460)
T 3gju_A          338 ---GVANLELIDE------------MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLA-AVEFVADKD-----DR  396 (460)
T ss_dssp             ---HHHHHHHHHH------------TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEE-EEEECSBTT-----TT
T ss_pred             ---HHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEE-EEEEccCcc-----cc
Confidence               2233322211            11245566666666677777777776666666666554 444431110     00


Q ss_pred             cCCCC----cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccc
Q psy13922        389 EGKCP----SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICI  464 (509)
Q Consensus       389 ~g~~~----~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (509)
                      ....+    ... +...|.++||.++|+.   .                                               
T Consensus       397 ~~~~~~~~~~~~-~~~~l~~~Gv~v~~~~---~-----------------------------------------------  425 (460)
T 3gju_A          397 VFFDASQKIGPQ-VATALAASGVIGRAMP---Q-----------------------------------------------  425 (460)
T ss_dssp             BCCCGGGCHHHH-HHHHHHHTTEECEECS---S-----------------------------------------------
T ss_pred             ccccchHHHHHH-HHHHHHHCCeEEecCC---C-----------------------------------------------
Confidence            00000    123 3455556799999854   1                                               


Q ss_pred             cCCCCCCCCCCceeEEEE--eecChHHHHHHHHHHHHHHHHHHh
Q psy13922        465 VPGAGFGQVPGTYHFRTT--ILPQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       465 ~~~~~~~~~~~~~~~Rls--~~~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                       .+          ++||+  +..++++|++++++|++++++..+
T Consensus       426 -~~----------~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          426 -GD----------ILGFAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             -SC----------EEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CC----------EEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             12          89999  568999999999999999987754

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.95  E-value=1e-26  Score=242.60  Aligned_cols=326  Identities=12%  Similarity=0.116  Sum_probs=209.7

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh---c----
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI---E----   98 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~----   98 (509)
                      .|+.+++++.+++..........|+. ....++++.+++++    +  +.+++|++|+|++++++.+++++.   +    
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~----~--~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~  132 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMT----P--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHS----C--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhC----C--CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence            37899999999997732111223432 22355666666655    4  467899999999999999998764   2    


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhc----------------CCEEEEEecCC-CCCC-CCCHHHHHHHHHhhhccCCce
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEF----------------NMEQIGYYLDE-SKQW-GLPISELERSITEARKHCNPR  160 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~----------------g~~~~~v~~~~-~~~~-~~d~~~L~~~i~~~~~~~~~~  160 (509)
                      +++    .|+++.|+|+++...+...                +...+.++... +..| .+|++.|++.+++..  .+++
T Consensus       133 ~~~----~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~  206 (429)
T 1s0a_A          133 ARQ----RFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR--HEIA  206 (429)
T ss_dssp             CCC----EEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT--TTEE
T ss_pred             CCC----eEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC--CCEE
Confidence            455    9999999999865533321                23344333211 1134 478999999997421  1466


Q ss_pred             EEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        161 AIVIINP-GNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       161 ~ivi~~p-~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      +|+++.. +||||. ..+++++++|.++|++||+++|+||+|.+|...+.  ..++...  +..     .+++   |+||
T Consensus       207 ~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~--~~~~~~~--~~~-----~d~~---t~sK  274 (429)
T 1s0a_A          207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACEHA--EIA-----PDIL---CLGK  274 (429)
T ss_dssp             EEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGG--TCC-----CSEE---EECG
T ss_pred             EEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch--HHHhhhc--CCC-----CCEE---Eecc
Confidence            6555544 799996 66788899999999999999999999998765432  1111111  111     1233   7899


Q ss_pred             ccCCCCC-CeeEEEeeecCCHHHHHHHHHh------hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc
Q psy13922        239 GYMGECG-LRGGYSEVINLDPGVKAMLHKS------ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV  311 (509)
Q Consensus       239 ~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (509)
                      .+ | +| +|+||++   .++++++.+...      .....+.+.+                                  
T Consensus       275 ~l-~-~G~~~iG~~~---~~~~~~~~l~~~~~~~~~~~~t~~~n~~----------------------------------  315 (429)
T 1s0a_A          275 AL-T-GGTMTLSATL---TTREVAETISNGEAGCFMHGPTFMGNPL----------------------------------  315 (429)
T ss_dssp             GG-G-TSSSCCEEEE---ECHHHHHHHHTSTTSSCSCCCTTTTCHH----------------------------------
T ss_pred             cc-c-CCCccceEEE---eCHHHHHHhhcCCCcccccCCCCCCCHH----------------------------------
Confidence            99 5 68 9999998   688998888753      1123334454                                  


Q ss_pred             ccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeeccCCceeEEeecCCCCHHHHHHHhh
Q psy13922        312 GQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQGAMYAFPQMKLPAKAIAKAKA  388 (509)
Q Consensus       312 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~  388 (509)
                      +++++.++++           ..+ -+...+.++++++.+.+.|+++   |++....+.| .++|+++.-+         
T Consensus       316 ~~~a~~aal~-----------~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~---------  373 (429)
T 1s0a_A          316 ACAAANASLA-----------ILE-SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHP---------  373 (429)
T ss_dssp             HHHHHHHHHH-----------HHH-TCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSC---------
T ss_pred             HHHHHHHHHH-----------HHH-hCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCc---------
Confidence            3333333221           000 0234566667778888888765   4554444554 4677666411         


Q ss_pred             cCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCC
Q psy13922        389 EGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGA  468 (509)
Q Consensus       389 ~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (509)
                         .+...+... |.++||.+.|+   +                                                    
T Consensus       374 ---~~~~~l~~~-l~~~Gi~v~~~---~----------------------------------------------------  394 (429)
T 1s0a_A          374 ---VNMAALQKF-FVEQGVWIRPF---G----------------------------------------------------  394 (429)
T ss_dssp             ---BCHHHHHHH-HHHTTEECCCB---T----------------------------------------------------
T ss_pred             ---ccHHHHHHH-HHHCCCEEecc---C----------------------------------------------------
Confidence               123344444 44679998752   1                                                    


Q ss_pred             CCCCCCCceeEEEEe--ecChHHHHHHHHHHHHHHHHH
Q psy13922        469 GFGQVPGTYHFRTTI--LPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       469 ~~~~~~~~~~~Rls~--~~~~~~i~~~~~~l~~~~~~~  504 (509)
                      +        ++|+++  ..+++++++++++|+++++++
T Consensus       395 ~--------~iRis~~~~~t~e~i~~~~~~l~~~~~~~  424 (429)
T 1s0a_A          395 K--------LIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             T--------EEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             C--------EEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            1        899995  589999999999999987543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.95  E-value=9.8e-27  Score=242.89  Aligned_cols=210  Identities=9%  Similarity=0.031  Sum_probs=141.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-C-CCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-D-VDGKK  104 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~-gd~~~  104 (509)
                      |+.+++++.+++..... ....|+     .+++.++++.+.+.++  ..+++|++|+|+++++..+++.+.. + ++   
T Consensus        61 ~p~v~~a~~~~~~~~~~-~~~~~~-----~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~---  129 (433)
T 1zod_A           61 HPEIVSVIGEYAGKLDH-LFSEML-----SRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKY---  129 (433)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCTTCC-----CHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCC---
T ss_pred             CHHHHHHHHHHHHhCcc-cccccC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCC---
Confidence            78999999999877321 112233     2344444444444445  3568999999999999999987642 3 34   


Q ss_pred             CeEEEcCCCChhHHHHHHhc--------------CCEEEEEecCCCCCCC--------CCHHHHHHHHHhhhccCCceEE
Q psy13922        105 PGVLIPIPQYPLYSASLAEF--------------NMEQIGYYLDESKQWG--------LPISELERSITEARKHCNPRAI  162 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~--------------g~~~~~v~~~~~~~~~--------~d~~~L~~~i~~~~~~~~~~~i  162 (509)
                       .|++..|+|+++...+...              |...+.++......|.        +|++.|++.+++.. ..++++|
T Consensus       130 -~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~~v  207 (433)
T 1zod_A          130 -EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS-SGNLAAF  207 (433)
T ss_dssp             -EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC-CSCEEEE
T ss_pred             -eEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcC-CCCeEEE
Confidence             8999999998865543322              4444433321111122        36899999987521 0156666


Q ss_pred             EEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +++..+||||. ..+++++++|.++|++||+++|+||+|.+|.+.+.  ...+...  +...     +   +.|+||.+ 
T Consensus       208 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~--~~~~~~~--~~~~-----d---i~s~sK~~-  274 (433)
T 1zod_A          208 IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQRD--GVTP-----D---ILTLSKTL-  274 (433)
T ss_dssp             EECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TCCC-----S---EEEECHHH-
T ss_pred             EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch--HhHHhhc--CCCC-----C---EEEecccc-
Confidence            65444688996 67889999999999999999999999998865532  2222211  1111     1   34889999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      | +|+|+||++   .++++++.+..
T Consensus       275 ~-~G~~ig~~~---~~~~~~~~~~~  295 (433)
T 1zod_A          275 G-AGLPLAAIV---TSAAIEERAHE  295 (433)
T ss_dssp             H-TTSSCEEEE---ECHHHHHHHHH
T ss_pred             c-CCCCeeEEE---EhHHHHHhhcc
Confidence            5 599999998   68899998876

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.95  E-value=8.1e-26  Score=232.44  Aligned_cols=363  Identities=12%  Similarity=0.093  Sum_probs=230.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      +.|.+|+.+++++.+.+.+   ..   |.+..+..+++++++++++        .+++++|+|+++++..+++++ .++|
T Consensus        14 ~~p~~~~~~~~a~~~~~~~---~~---~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~~~~~g   79 (393)
T 1mdo_A           14 SRPAMGAEELAAVKTVLDS---GW---ITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGIGEG   79 (393)
T ss_dssp             CCCCCCHHHHHHHHHHHHH---TC---CSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCHHHHHHHHHHHhc---CC---cCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHcCCCCC
Confidence            4478999999999999877   22   3456788999999999993        247999999999999999999 8888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++.|+|.++...++..|++++.++.+++ ++.+|++.|++.+++     ++++|+++   ||+|...+   +
T Consensus        80 d----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~-----~~~~v~~~---~~~G~~~~---~  143 (393)
T 1mdo_A           80 D----EVITPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP-----QTKAIIPV---HYAGAPAD---L  143 (393)
T ss_dssp             C----EEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT-----TEEEECCB---CGGGCCCC---H
T ss_pred             C----EEEeCCCccHhHHHHHHHCCCEEEEEeccCC-cCCCCHHHHHHhcCC-----CceEEEEe---CCCCCcCC---H
Confidence            8    9999999999999999999999999998754 467999999999876     68888875   48999876   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcc-cccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecCC
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDN-VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~~  257 (509)
                      ++|.++|+++|+++|+|++|..+ .+.+  .  ++       +.     ..+++.|+|  |.+   +|.|+||++.  .+
T Consensus       144 ~~i~~l~~~~~~~li~D~a~~~g~~~~~--~--~~-------~~-----~d~~~~S~~k~K~l---~~~~~g~~~~--~~  202 (393)
T 1mdo_A          144 DAIYALGERYGIPVIEDAAHATGTSYKG--R--HI-------GA-----RGTAIFSFHAIKNI---TCAEGGIVVT--DN  202 (393)
T ss_dssp             HHHHHHHHHHTCCBCEECTTCTTCEETT--E--ET-------TS-----SSEEEEECCTTSSS---CSSSCEEEEE--SC
T ss_pred             HHHHHHHHHcCCeEEEECccccCCeECC--e--ec-------CC-----CCeEEEeCCCCCcc---ccccceEEEe--CC
Confidence            99999999999999999999964 3321  1  11       00     156677999  665   4558999973  45


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      +++++.+..........+...     +.+....+.   +.    ....+...  ....+..++.         ....+++
T Consensus       203 ~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~---~~----~~~~g~~~--~~~~~~~a~~---------~~~l~~~  259 (393)
T 1mdo_A          203 PQFADKLRSLKFHGLGVDAWD-----RQSGGRAPQ---AE----VLAPGYKY--NLPDLNAAIA---------LAQLQKL  259 (393)
T ss_dssp             HHHHHHHHHHTBTTEECC----------------C---CE----ESSCCCBC--CCCHHHHHHH---------HHHHHTH
T ss_pred             HHHHHHHHHHHhcCCcccchh-----hhccccccc---cc----ccccCccC--CCCHHHHHHH---------HHHHHHH
Confidence            899998876544211111110     000000000   00    00000000  0000110000         1122335


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeecc-C-----CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNP-V-----QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~-----~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      ++..+..+++++.+.+.|.+++ +++.. +     .+++++|+.++  ...      .+. +..+ +...|.++||.+.+
T Consensus       260 ~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~--~~~------~~~-~~~~-l~~~l~~~gi~v~~  328 (393)
T 1mdo_A          260 DALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVD--EAR------CGI-TRDA-LMASLKTKGIGTGL  328 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECC--HHH------HSS-CHHH-HHHHHHHTTBCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEec--ccc------ccc-CHHH-HHHHHHhCCCCccc
Confidence            5666677778888999999884 77642 2     34556776664  100      022 2334 35556678999998


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEK  489 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~  489 (509)
                      |..+...  ..++..  +            ......|...+             .+..        ++|+++.  +++++
T Consensus       329 ~~~~~~~--~~~~~~--~------------~~~~~~~~~~~-------------~~~~--------~lRi~~~~~~t~~~  371 (393)
T 1mdo_A          329 HFRAAHT--QKYYRE--R------------FPTLTLPDTEW-------------NSER--------ICSLPLFPDMTESD  371 (393)
T ss_dssp             CCCCGGG--SHHHHH--H------------STTCCCHHHHH-------------HHTT--------EEEECCCTTCCHHH
T ss_pred             ccCcccc--Chhhhc--c------------CCccCChhHHH-------------HHhC--------EEEecCCCCCCHHH
Confidence            7754210  000000  0            00000000000             0112        7999998  79999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy13922        490 LKAMLEKFREFHEEFLA  506 (509)
Q Consensus       490 i~~~~~~l~~~~~~~~~  506 (509)
                      ++.+++.|+++++.+..
T Consensus       372 i~~~~~~l~~~~~~~~~  388 (393)
T 1mdo_A          372 FDRVITALHQIAGQGSH  388 (393)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhcCCc
Confidence            99999999998876654

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.95  E-value=8.3e-26  Score=238.09  Aligned_cols=355  Identities=17%  Similarity=0.193  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCCC
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDGK  103 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~~  103 (509)
                      +.+.+++.+.+..   ... .|++..+..+++++++++++        .++|++|+|+++|+..+++++++    +||  
T Consensus        55 ~~v~~a~~~~~~~---~~~-~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd--  120 (467)
T 1ax4_A           55 NAMSDHQWAAMIT---GDE-AYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGK--  120 (467)
T ss_dssp             CCEEHHHHHHHHT---CCC-CSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHhh---ccc-ccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCC--
Confidence            5667777666654   223 48888888999999999983        36899999999999999999998    888  


Q ss_pred             CCe---EEEcCCCChhHHHHHHhcCCEEEEEecCC----C----CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-
Q psy13922        104 KPG---VLIPIPQYPLYSASLAEFNMEQIGYYLDE----S----KQWGLPISELERSITEARKHCNPRAIVIINPGNPT-  171 (509)
Q Consensus       104 ~~~---Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~----~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-  171 (509)
                        .   |+++.+.|..+...+...|.+++.++...    .    .++.+|++.|++.+++.. ..++++|++++|+||+ 
T Consensus       121 --~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~-~~~~~~vi~~~~~np~g  197 (467)
T 1ax4_A          121 --AKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG-ADNIVAIVSTVTCNSAG  197 (467)
T ss_dssp             --CSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTT
T ss_pred             --ccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC-CCCeeEEEEeccccCCC
Confidence              7   89887777777888888999988876532    1    134689999999998631 0158999999999999 


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-ccc---c--CCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQD-NVY---A--EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~~~---~--~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      |.+++.+++++|+++|++||++||+|+++.. ..+   .  .+....++.++.+++..   ..+++ +.|+||.+ |++ 
T Consensus       198 G~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~-~~s~sK~~-g~~-  271 (467)
T 1ax4_A          198 GQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK---YADAL-TMSAKKDP-LLN-  271 (467)
T ss_dssp             SBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG---GCSEE-EEETTSTT-CCS-
T ss_pred             ccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhcc---ccceE-EEeccccC-CCC-
Confidence            8999999999999999999999999998653 010   0  00011233333221110   11244 46999998 655 


Q ss_pred             CeeEEEeeecCCH-HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        246 LRGGYSEVINLDP-GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       246 lr~G~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      + .||++.  .++ ++++.+......+.+....+....            .                ...++...+    
T Consensus       272 ~-Gg~~~~--~d~~~l~~~~~~~~~~~~~~~~~~~~~~------------~----------------~~~a~~~~l----  316 (467)
T 1ax4_A          272 I-GGLVAI--RDNEEIFTLARQRCVPMEGFVTYGGLAG------------R----------------DMAAMVQGL----  316 (467)
T ss_dssp             S-CEEEEE--SSCHHHHHHHHHHHHHHTCSTTTTTCCH------------H----------------HHHHHHHHH----
T ss_pred             c-ceEEEe--CCHHHHHHHHHhhccccccccccCCccc------------h----------------HHHHHHHHH----
Confidence            1 266652  336 888887665432111111100000            0                111111111    


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCC-----CCHHHHHHHhhcCCCCcHHHHH
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK-----LPAKAIAKAKAEGKCPSVLYAF  399 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~  399 (509)
                            ....+  +.......++++.+.+.|++ +++.+..+.+++++|+++.     ++.        .+. +...++.
T Consensus       317 ------~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~l~~  378 (467)
T 1ax4_A          317 ------EEGTE--EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIPG--------DQF-PAQAVIN  378 (467)
T ss_dssp             ------HHTTC--HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSCG--------GGC-HHHHHHH
T ss_pred             ------HHhhh--hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhcccccc--------CCC-CHHHHHH
Confidence                  10100  11222233566778888877 4888777888999998732     111        011 2345555


Q ss_pred             HHHhhcCeEEec-CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        400 ELLERTGICIVP-GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       400 ~ll~~~gI~v~p-g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      .++.++||.+.| |..|....                                              +..+.+...+..+
T Consensus       379 ~L~~~~gv~v~~~g~~~~~~~----------------------------------------------~~~g~~~~~~~~~  412 (467)
T 1ax4_A          379 ALYLESGVRAVEIGSFLLGRD----------------------------------------------PATGEQKHADMEF  412 (467)
T ss_dssp             HHHHHHCEECEEESHHHHCBC----------------------------------------------TTTCSBCCCSCCE
T ss_pred             HHHHhcCceeeecCccccccc----------------------------------------------cccccccccccce
Confidence            665889999999 55321100                                              0000000111239


Q ss_pred             EEEEee---cChHHHHHHHHHHHHHHHHH
Q psy13922        479 FRTTIL---PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       479 ~Rls~~---~~~~~i~~~~~~l~~~~~~~  504 (509)
                      +||++.   .+.+++++++++|++++++.
T Consensus       413 iRls~~~~~~t~e~i~~~~~~l~~~~~~~  441 (467)
T 1ax4_A          413 MRLTIARRVYTNDHMDYIADALIGLKEKF  441 (467)
T ss_dssp             EEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence            999998   68999999999999998764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.95  E-value=1e-26  Score=239.64  Aligned_cols=312  Identities=12%  Similarity=0.097  Sum_probs=210.4

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--cCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--EDVDGK  103 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~~  103 (509)
                      .|+.+++++.+++...... ...| +.....++++.+++++    +  +.+++|++|+|+++++..+++++.  .+++  
T Consensus        62 ~~~~v~~a~~~~~~~~~~~-~~~~-~~~~~~~l~~~la~~~----~--~~~~~v~~~~gg~~a~~~al~~~~~~~~~~--  131 (395)
T 1vef_A           62 GNPEVVEAVKRQAETLMAM-PQTL-PTPMRGEFYRTLTAIL----P--PELNRVFPVNSGTEANEAALKFARAHTGRK--  131 (395)
T ss_dssp             TCHHHHHHHHHHHHHCCCC-CTTS-CCHHHHHHHHHHHHTS----C--TTEEEEEEESSHHHHHHHHHHHHHHHHSCC--
T ss_pred             CCHHHHHHHHHHHHhCCCC-cccc-CCHHHHHHHHHHHHhc----C--CCcCEEEEcCcHHHHHHHHHHHHHHHhCCC--
Confidence            5789999999999863211 1224 3444466666666655    4  357899999999999999998874  5666  


Q ss_pred             CCeEEEcCCCChhH-HHHHHhcCCE------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922        104 KPGVLIPIPQYPLY-SASLAEFNME------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~-~~~~~~~g~~------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                        .|+++.|+|++. ...+...|.+            +..++       ..|++.|++.+++     ++++|+++.++||
T Consensus       132 --~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~-------~~d~~~l~~~i~~-----~~~~v~~~~~~~~  197 (395)
T 1vef_A          132 --KFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP-------YNDVEALKRAVDE-----ETAAVILEPVQGE  197 (395)
T ss_dssp             --EEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC-------TTCHHHHHHHCCT-----TEEEEEECSEETT
T ss_pred             --eEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeC-------CCcHHHHHHHhcc-----CEEEEEEeCccCC
Confidence              899999999764 4456666765            22222       2489999998875     7888888777899


Q ss_pred             CCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        171 TGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       171 tG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      ||.++ +++++++|+++|++||+++|+||+|.++.+.+.  ..++...  +..     .+++   ||||.+ | +|+|+|
T Consensus       198 tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~~~~~~~--~~~-----~d~~---s~sK~~-~-~g~~~G  263 (395)
T 1vef_A          198 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RFAFEHF--GIV-----PDIL---TLAKAL-G-GGVPLG  263 (395)
T ss_dssp             TTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TCC-----CSEE---EECGGG-G-TTSSCE
T ss_pred             CCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--hhHhhhc--CCC-----CCEE---EEcccc-c-CCCceE
Confidence            99864 788999999999999999999999997654431  2122211  111     1233   889999 5 599999


Q ss_pred             EEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        250 YSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      |++   .++++++.+..... ...+.+.+                                  .+.++..+++       
T Consensus       264 ~~~---~~~~~~~~l~~~~~~~~~~~~~~----------------------------------~~~a~~~al~-------  299 (395)
T 1vef_A          264 VAV---MREEVARSMPKGGHGTTFGGNPL----------------------------------AMAAGVAAIR-------  299 (395)
T ss_dssp             EEE---EEHHHHHTSCTTSSCCSSTTCHH----------------------------------HHHHHHHHHH-------
T ss_pred             EEE---ehHHHHhhhccCCcCCCcCCCHH----------------------------------HHHHHHHHHH-------
Confidence            998   57777776644211 12233333                                  3333322221       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee--ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC--NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG  406 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~g  406 (509)
                          .... +.+.+.++++++.+.+.|++++. .+  ..+..+.++|++++.              +...+...+++++|
T Consensus       300 ----~~~~-~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~~~~--------------~~~~l~~~l~~~~g  359 (395)
T 1vef_A          300 ----YLER-TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGLMVGLELKE--------------KAAPYIARLEKEHR  359 (395)
T ss_dssp             ----HHHH-HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETTEEEEEESS--------------CSHHHHHHHHHHHC
T ss_pred             ----HHHh-CCHHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEEEEEEEEcC--------------hHHHHHHHHHHHCC
Confidence                1111 34567788888899999988732 21  122345677766641              14444555554789


Q ss_pred             eEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--
Q psy13922        407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--  484 (509)
Q Consensus       407 I~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--  484 (509)
                      |.+.|+.                                                    .+          ++|+++.  
T Consensus       360 i~v~~~~----------------------------------------------------~~----------~iRi~~~~~  377 (395)
T 1vef_A          360 VLALQAG----------------------------------------------------PT----------VIRFLPPLV  377 (395)
T ss_dssp             EECEESS----------------------------------------------------TT----------EEEECCCTT
T ss_pred             eEEecCC----------------------------------------------------CC----------EEEEeCCCC
Confidence            9999742                                                    22          8999865  


Q ss_pred             cChHHHHHHHHHHHHHH
Q psy13922        485 PQPEKLKAMLEKFREFH  501 (509)
Q Consensus       485 ~~~~~i~~~~~~l~~~~  501 (509)
                      .+++++++++++|++++
T Consensus       378 ~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          378 IEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            79999999999998875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=1.3e-26  Score=241.27  Aligned_cols=323  Identities=12%  Similarity=0.110  Sum_probs=206.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~~  105 (509)
                      |+.+++++.+++..........|+     .+++.++++.+.+.+|++. +++|++|+|+++++..+++.+.. .++    
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~~~~-----~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~~~~~~----  130 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLAHAAANDFY-----NIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVKNTGRK----  130 (419)
T ss_dssp             CHHHHHHHHHHHTTSCCCSCSCSC-----CHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHTTSCC----
T ss_pred             CHHHHHHHHHHHhhCccccccccC-----CHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHHHhhCC----
Confidence            799999999998762110112233     2334444444444446443 78999999999999999998764 366    


Q ss_pred             eEEEcCCCChhHHHHHHh-c-------------CCEEEEEecCCC--CCCC------------CCHHHHH-HHHHhhhcc
Q psy13922        106 GVLIPIPQYPLYSASLAE-F-------------NMEQIGYYLDES--KQWG------------LPISELE-RSITEARKH  156 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~-~-------------g~~~~~v~~~~~--~~~~------------~d~~~L~-~~i~~~~~~  156 (509)
                      .|+++.|+|+++...... .             ...++.+|.+..  ..|+            +|++.|+ +.+++....
T Consensus       131 ~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~  210 (419)
T 2eo5_A          131 YIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPP  210 (419)
T ss_dssp             EEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCG
T ss_pred             cEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCC
Confidence            999999999875543331 1             125667766432  1122            3688998 888741000


Q ss_pred             CCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEe
Q psy13922        157 CNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMS  235 (509)
Q Consensus       157 ~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  235 (509)
                      .++++|+++..|||||. ..+++++++|.++|++||+++|+||+|.+|.+.+.  ..++...  +..     .+++   |
T Consensus       211 ~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~--~~~~~~~--~~~-----~d~~---t  278 (419)
T 2eo5_A          211 EEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK--LFAIENF--NTV-----PDVI---T  278 (419)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGG--TCC-----CSEE---E
T ss_pred             CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc--hhhHHhc--CCC-----CCEE---E
Confidence            14555555434567896 67889999999999999999999999998876542  1111111  111     1233   8


Q ss_pred             cccccCCCCC-CeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc
Q psy13922        236 CSKGYMGECG-LRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT  314 (509)
Q Consensus       236 ~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (509)
                      |||.+ | +| +|+||++   ++++++ .+........+.+.+                                  +++
T Consensus       279 ~sK~~-~-~G~~riG~~~---~~~~~~-~~~~~~~~t~~~n~~----------------------------------~~~  318 (419)
T 2eo5_A          279 LAKAL-G-GGIMPIGATI---FRKDLD-FKPGMHSNTFGGNAL----------------------------------ACA  318 (419)
T ss_dssp             ECGGG-G-TTTSCCEEEE---EEGGGC-CC------CCCCCHH----------------------------------HHH
T ss_pred             ecccc-c-CCccceEEEE---EchHhh-cCCcccCCCCCCCHH----------------------------------HHH
Confidence            89999 5 59 9999998   577776 552122234455666                                  444


Q ss_pred             hhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCc
Q psy13922        315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPS  394 (509)
Q Consensus       315 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~  394 (509)
                      ++..+++           .   .+++++.++++++++.+.|+++  +...++.| .++|+++. +...          ..
T Consensus       319 aa~aal~-----------~---~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~g-~~~~i~~~-~~~~----------~~  370 (419)
T 2eo5_A          319 IGSKVID-----------I---VKDLLPHVNEIGKIFAEELQGL--ADDVRGIG-LAWGLEYN-EKKV----------RD  370 (419)
T ss_dssp             HHHHHHH-----------H---HHHHHHHHHHHHHHHHHHHTTS--SSEEEEET-TEEEEECS-CHHH----------HH
T ss_pred             HHHHHHH-----------H---HHHHHHHHHHHHHHHHHHHHHh--hhheEeee-EEEEEEEe-cCcc----------HH
Confidence            4444322           1   2237788889999999999876  33344554 45565553 2100          12


Q ss_pred             HHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCC
Q psy13922        395 VLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVP  474 (509)
Q Consensus       395 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (509)
                      . +...+ .++||.++|+.                                                    .+       
T Consensus       371 ~-~~~~l-~~~Gv~v~~~~----------------------------------------------------~~-------  389 (419)
T 2eo5_A          371 R-IIGES-FKRGLLLLPAG----------------------------------------------------RS-------  389 (419)
T ss_dssp             H-HHHHH-HHTTEECEEET----------------------------------------------------TT-------
T ss_pred             H-HHHHH-HHCCCEEecCC----------------------------------------------------CC-------
Confidence            3 44444 47899999743                                                    12       


Q ss_pred             CceeEEEEee--cChHHHHHHHHHHHHHHHH
Q psy13922        475 GTYHFRTTIL--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       475 ~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~  503 (509)
                         ++|+++.  .+++++++++++|++++++
T Consensus       390 ---~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          390 ---AIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             ---EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence               8999654  8999999999999998865

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.94  E-value=4.6e-26  Score=239.99  Aligned_cols=345  Identities=14%  Similarity=0.073  Sum_probs=215.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      ||.|++++.+++.+.   .+. |....+..+.++++++++.+.++  ...++|++|+|+++|+..+++.+++.    |.+
T Consensus        68 ~p~v~~A~~~~~~~~---~~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~  141 (459)
T 4a6r_A           68 RKDFAEAARRQMEEL---PFY-NTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKP  141 (459)
T ss_dssp             CHHHHHHHHHHHHHC---SCC-CTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc---ccc-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            789999999999872   211 33333445677777777776655  45679999999999999999999761    111


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCC--C-CCCCCC--------HHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDE--S-KQWGLP--------ISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d--------~~~L~~~i~~~~~~~~  158 (509)
                      +++.|++..|+|+++...+...+.             .+..++...  . +.+ .|        ++.|++.+++... .+
T Consensus       142 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~-~~  219 (459)
T 4a6r_A          142 EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGA-DK  219 (459)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG-GG
T ss_pred             CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCC-CC
Confidence            234999999999988766554422             222333211  0 112 45        7888888874211 14


Q ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        159 PRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      +++|+++.++|++|. .++++++++|.++|++||+++|+||+|.+|...+.  ......  .++.+     ++   .+||
T Consensus       220 ~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~--~~~~p-----di---~t~s  287 (459)
T 4a6r_A          220 VAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE--WFGHQH--FGFQP-----DL---FTAA  287 (459)
T ss_dssp             EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHH--HTCCC-----SE---EEEC
T ss_pred             EEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchHhh--cCCCC-----Ce---eehh
Confidence            566666655666666 56999999999999999999999999999876642  222222  12221     13   3679


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHH---hhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccccc
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHK---SIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ  313 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (509)
                      |.+ |.+|+|+||++   .++++++.+..   ... .+++.+.+++.+                              +.
T Consensus       288 K~l-~gg~~~lg~v~---~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa------------------------------a~  333 (459)
T 4a6r_A          288 KGL-SSGYLPIGAVF---VGKRVAEGLIAGGDFNHGFTYSGHPVCAAV------------------------------AH  333 (459)
T ss_dssp             GGG-GTTSSCCEEEE---ECHHHHHHHHHHCTTHHHHHHCSCHHHHHH------------------------------HH
T ss_pred             hhh-cCCCCCcccee---eCHHHHHHhhcCCCcccCCCCCCCHHHHHH------------------------------HH
Confidence            999 43449999998   79999999872   222 334555552222                              22


Q ss_pred             chhhcccCCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCC
Q psy13922        314 TVMDCVVNPPQPGEPSYEQFSREKQSVL-DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKC  392 (509)
Q Consensus       314 ~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~  392 (509)
                      +++..+.+         +   +..++++ +.....++.+.+.|.+.|.+..+.+.|.++. +++.....     .+....
T Consensus       334 aal~~~~~---------~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~-----~~~~~~  395 (459)
T 4a6r_A          334 ANVAALRD---------E---GIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQA-FTLVKNKA-----KRELFP  395 (459)
T ss_dssp             HHHHHHHH---------T---CHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEE-EEECSBTT-----TTBCCS
T ss_pred             HHHHHHhc---------c---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEE-EEEecCcc-----cccccc
Confidence            23222111         1   1133444 4444455555555666665666666666544 34431100     000000


Q ss_pred             C----cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCC
Q psy13922        393 P----SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGA  468 (509)
Q Consensus       393 ~----~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (509)
                      +    ...+ ...|.++||.++|+.   .                                                   
T Consensus       396 ~~~~~~~~~-~~~l~~~Gv~v~~~g---~---------------------------------------------------  420 (459)
T 4a6r_A          396 DFGEIGTLC-RDIFFRNNLIMRACG---D---------------------------------------------------  420 (459)
T ss_dssp             STTHHHHHH-HHHHHHTTEECEEET---T---------------------------------------------------
T ss_pred             chHHHHHHH-HHHHHHCCeEEecCC---C---------------------------------------------------
Confidence            0    2233 344556799998732   1                                                   


Q ss_pred             CCCCCCCceeEEEE--eecChHHHHHHHHHHHHHHHHHHhh
Q psy13922        469 GFGQVPGTYHFRTT--ILPQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       469 ~~~~~~~~~~~Rls--~~~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                               ++|++  +..+++++++++++|++++++..++
T Consensus       421 ---------~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  452 (459)
T 4a6r_A          421 ---------HIVSAPPLVMTRAEVDEMLAVAERCLEEFEQT  452 (459)
T ss_dssp             ---------EEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                     89998  5589999999999999999887654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.94  E-value=9.4e-26  Score=234.45  Aligned_cols=208  Identities=16%  Similarity=0.267  Sum_probs=158.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-h
Q psy13922         19 QLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-I   97 (509)
Q Consensus        19 ~~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~   97 (509)
                      +..+.|.+|+.+++++.+.+++   ..+.+|++..|..++++++++.+.+.+|.+    ++++++++++++..+++++ .
T Consensus         7 g~p~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~   79 (418)
T 2c81_A            7 HWPEWPQHSDRTRRKIEEVFQS---NRWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGI   79 (418)
T ss_dssp             -CCCSSCCCHHHHHHHHHHHHH---TCCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHhc---CCccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCC
Confidence            3445677899999999999987   344457777774444555555544444532    5677777889999999999 7


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||    .|+++.|+|.++...++..|++++.++.+++ ++.+|++.|++.+++     ++++|+++   ||||...+ 
T Consensus        80 ~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~---~~~G~~~~-  145 (418)
T 2c81_A           80 GEGD----EVIVPSLTWIATATAVLNVNALPVFVDVEAD-TYCIDPQLIKSAITD-----KTKAIIPV---HLFGSMAN-  145 (418)
T ss_dssp             CTTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHGGGCCT-----TEEEECCB---CCTTCCCC-
T ss_pred             CCcC----EEEECCCccHhHHHHHHHcCCEEEEEecCCC-CCCcCHHHHHHhhCC-----CCeEEEEe---CCcCCccc-
Confidence            8888    9999999999999999999999999998753 578999999998876     68888854   58998754 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCccc-ccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeee
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNV-YAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~  254 (509)
                        +++|.++|+++|++||+|++|..+. +++. ...+       .      . .+.+.||  ||.+ |. | |+||++. 
T Consensus       146 --~~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~-------~------~-~~~~~s~s~~K~~-~~-g-~~g~~~~-  204 (418)
T 2c81_A          146 --MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ-RAGT-------I------G-DIGAFSCQQGKVL-TA-G-EGGIIVT-  204 (418)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETTS-------S------S-SEEEEECCTTSSS-CS-S-SCEEEEE-
T ss_pred             --HHHHHHHHHHCCCEEEEECcccccCccCCE-eccc-------c------c-ceEEEeccCCccc-CC-C-CeEEEEE-
Confidence              8999999999999999999999876 4321 1110       0      0 2445677  9999 65 8 9999972 


Q ss_pred             cCCHHHHHHHHHhhh
Q psy13922        255 NLDPGVKAMLHKSIS  269 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~  269 (509)
                       .++++++.+.....
T Consensus       205 -~~~~l~~~~~~~~~  218 (418)
T 2c81_A          205 -KNPRLFELIQQLRA  218 (418)
T ss_dssp             -SCHHHHHHHHHHHB
T ss_pred             -CCHHHHHHHHHHHH
Confidence             46889888876554

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.94  E-value=1.3e-25  Score=232.16  Aligned_cols=212  Identities=17%  Similarity=0.184  Sum_probs=154.4

Q ss_pred             CCCCCCCC--CHHHHHHHHHHHhccc-CCCcccCC--CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHH
Q psy13922         19 QLFDDPRF--PDDVKQRAQAVLDGCR-GQSVGSYT--DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL   93 (509)
Q Consensus        19 ~~~~~~~~--p~~v~~a~~~~l~~~~-~~~~~~Y~--~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~   93 (509)
                      ..++.|++  |+.+.+++.+++.... ......|+  +..+..++++.+++++    |.    +++++++++++++..++
T Consensus        25 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~----~~~i~~~sG~~a~~~~l   96 (398)
T 2rfv_A           25 GALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE----RG----EAGLATASGISAITTTL   96 (398)
T ss_dssp             CCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHH
T ss_pred             CCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHH
Confidence            34577776  3444455444444100 01111243  4556677888888877    42    25666666679999999


Q ss_pred             HHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         94 KLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        94 ~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      +++.++||    +|+++.|+|.++...+    +..|.+++.++.+       |++.+++.+++     ++++|++++|+|
T Consensus        97 ~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~-----~~~~v~~~~~~n  160 (398)
T 2rfv_A           97 LTLCQQGD----HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRP-----ETKVVYIETPAN  160 (398)
T ss_dssp             HHHCCTTC----EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCT-----TEEEEEEESSBT
T ss_pred             HHHhCCCC----EEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCC-----CCeEEEEECCCC
Confidence            99998888    9999999999988776    7789999998864       78999998876     799999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-
Q psy13922        170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-  248 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-  248 (509)
                      |||.+++   +++|+++|+++|+++|+||+|..+.+..     +. .    .+      ..+++.|+||.+ |.+|+|+ 
T Consensus       161 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~-~----~~------~di~~~s~sK~~-~~~g~~~~  220 (398)
T 2rfv_A          161 PTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ-----PL-Q----LG------ADIVVHSVTKYI-NGHGDVIG  220 (398)
T ss_dssp             TTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-----GG-G----GT------CSEEEEETTTTT-TCSSCCCC
T ss_pred             CCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-----ch-h----hC------CcEEEEeCcccc-cCCCCceE
Confidence            9999997   9999999999999999999999765531     11 1    11      256678999999 6799998 


Q ss_pred             EEEeeecCCHHHHH-HHHHhhhcc--cCcchh
Q psy13922        249 GYSEVINLDPGVKA-MLHKSISAM--LCPTVL  277 (509)
Q Consensus       249 G~v~~~~~~~~~~~-~l~~~~~~~--~~~~~~  277 (509)
                      ||++   .++++++ .+......+  ...+.+
T Consensus       221 G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  249 (398)
T 2rfv_A          221 GIIV---GKQEFIDQARFVGLKDITGGCMSPF  249 (398)
T ss_dssp             EEEE---ECHHHHHHHHHTHHHHTTCCCCCHH
T ss_pred             EEEE---ECHHHHHHHHHHHHHhCCCCCCCHH
Confidence            9998   6788776 565544422  344444

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.94  E-value=3.5e-26  Score=240.60  Aligned_cols=220  Identities=13%  Similarity=0.073  Sum_probs=147.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~~  105 (509)
                      |+.|++++.+++.+.     .+|....+..+.+.++++.+.+.++.. ..++|++|+|+++|+..+++.++. ++   ++
T Consensus        82 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~alk~a~~~~g---~~  152 (453)
T 4ffc_A           82 HPAVAAAIADQATHF-----THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVENAIKVARLATG---RP  152 (453)
T ss_dssp             CHHHHHHHHHHHHHC-----SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHC---CC
T ss_pred             CHHHHHHHHHHHHhc-----cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHHHHHHHHHHhcC---CC
Confidence            799999999999872     124443444566667777776665422 257999999999999999988764 23   23


Q ss_pred             eEEEcCCCChhHHHHHHhcCC--------------EEEEEecCC--CCCCCCC--------HHHHHHHHHhhhccCCceE
Q psy13922        106 GVLIPIPQYPLYSASLAEFNM--------------EQIGYYLDE--SKQWGLP--------ISELERSITEARKHCNPRA  161 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~--~~~~~~d--------~~~L~~~i~~~~~~~~~~~  161 (509)
                      .|++..++|+++...+...+.              .+..++...  ...++.+        ++.|++.+..     +..+
T Consensus       153 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~-----~~~a  227 (453)
T 4ffc_A          153 AVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA-----QSLA  227 (453)
T ss_dssp             EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG-----GGEE
T ss_pred             EEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC-----CCEE
Confidence            899999999987766554422              344444431  1122333        2333333322     3556


Q ss_pred             EEEeCCCCCCC--CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        162 IVIINPGNPTG--QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       162 ivi~~p~NPtG--~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      ++++.|+|++|  ...+++++++|.++|++||+++|+||+|.+|...+.  .......  ++.+     +   +.+|||.
T Consensus       228 avi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~a~~~~--~~~p-----d---i~t~sK~  295 (453)
T 4ffc_A          228 AIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--WFASEHE--GIVP-----D---IVTMAKG  295 (453)
T ss_dssp             EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TCCC-----S---EEEECGG
T ss_pred             EEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--cchhhhc--CCCc-----c---hHhhhhh
Confidence            66667777776  456888999999999999999999999999876542  2232221  1111     1   4478999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      + | .|+|+||++   +++++++.+..... .+++.+.+
T Consensus       296 ~-~-~G~~~G~~~---~~~~i~~~~~~~~~~~t~~~~~~  329 (453)
T 4ffc_A          296 I-A-GGMPLSAVT---GRAELMDAVYAGGLGGTYGGNPV  329 (453)
T ss_dssp             G-G-TTSSCEEEE---EEHHHHTTSCTTSSCCSSSSCHH
T ss_pred             h-c-CCcCeEEEE---ECHHHHhhhcccCcCCCCCcCHH
Confidence            9 5 599999998   78999888765433 34455666

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.94  E-value=3.3e-26  Score=238.61  Aligned_cols=345  Identities=12%  Similarity=0.084  Sum_probs=208.6

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCC----cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDS----PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~----~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--   97 (509)
                      +..|+.+++++.+.+..........|...    ....++|+.+++++    |  +++++|++|+|+++++..+++++.  
T Consensus        28 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~~~~~~~~~~  101 (432)
T 3a9z_A           28 TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGGTESNNLVIHSTVRC  101 (432)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCChHHHHHHHHHHHHhh
Confidence            35689999999998876211111223211    12457888888887    4  467899999999999999999986  


Q ss_pred             ------cCCCCCCCeEEEcCCCChhH-----------------HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh
Q psy13922         98 ------EDVDGKKPGVLIPIPQYPLY-----------------SASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR  154 (509)
Q Consensus        98 ------~~gd~~~~~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  154 (509)
                            ++||    +|+++.|+|..+                 ...++..|.+++.++.+++ ++.+|++.|++.+++  
T Consensus       102 ~~~~~~~~gd----~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~i~~--  174 (432)
T 3a9z_A          102 FHEQQTLQGR----TVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDILAAVRP--  174 (432)
T ss_dssp             HHHHHHHC----------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHHHHTCCT--
T ss_pred             hhhccccCCc----cccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHHHHhccC--
Confidence                  4787    999999999765                 3444557999999998752 347899999998876  


Q ss_pred             ccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC----------cEEEEcccCCcccccCCCccccHHHHHHHhCCC
Q psy13922        155 KHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK----------LFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEP  224 (509)
Q Consensus       155 ~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~----------i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~  224 (509)
                         ++++|++++|+||||.+++   +++|.++|+++|          +++|+|++|..+.     ...++...    +  
T Consensus       175 ---~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-----~~~~~~~~----~--  237 (432)
T 3a9z_A          175 ---TTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-----RRVDVEDL----G--  237 (432)
T ss_dssp             ---TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-----SCCCHHHH----C--
T ss_pred             ---CceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC-----cccChhhc----C--
Confidence               7999999999999999999   567888999999          9999999997642     12233322    1  


Q ss_pred             CCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH-HHHHHHhhh--------cccCcchhhhhccccccCCCCCchhH
Q psy13922        225 YKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV-KAMLHKSIS--------AMLCPTVLALVSLPQLFDDPRFPDDV  295 (509)
Q Consensus       225 ~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~-~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (509)
                         .+++ +.|+||.+ |   .|+||++   .++++ ...+.....        ..+.++..                  
T Consensus       238 ---~d~~-~~s~~K~~-g---~~~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  288 (432)
T 3a9z_A          238 ---VDFL-TIVGHKFY-G---PRIGALY---VRGVGKLTPLYPMLFGGGQERNFRPGTENTP------------------  288 (432)
T ss_dssp             ---CSEE-EEEGGGTT-C---CSCEEEE---ETTBTTTBCCCCSCCSSCGGGGTSCSCCCHH------------------
T ss_pred             ---CCEE-EEehhHhc-C---CcceEEE---EccccccCCcCceeecCCccccccCCCcCHH------------------
Confidence               1254 67999987 5   3599998   34443 221211000        01112222                  


Q ss_pred             HHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec--cC-----Cc
Q psy13922        296 KQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN--PV-----QG  368 (509)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~-----~~  368 (509)
                                      ++.++..+++          ...++++++++.++++++++.+.|++++|+.+.  .+     ..
T Consensus       289 ----------------~~~a~~aal~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~  342 (432)
T 3a9z_A          289 ----------------MIAGLGKAAD----------LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERL  342 (432)
T ss_dssp             ----------------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBC
T ss_pred             ----------------HHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCC
Confidence                            3333333322          222347888899999999999999886565432  22     12


Q ss_pred             eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCC
Q psy13922        369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCP  448 (509)
Q Consensus       369 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  448 (509)
                      +..+++.+.-          .+. +...+ ...+  .+|.+.+|..|....                           +.
T Consensus       343 ~~~~~~~~~~----------~~~-~~~~~-~~~l--~~i~~~~G~~~~~~~---------------------------~~  381 (432)
T 3a9z_A          343 PNTCNFSIQG----------SQL-RGYMV-LAQC--QTLLASVGASCHSDH---------------------------ED  381 (432)
T ss_dssp             TTEEEEEECS----------TTC-CHHHH-HHHC--SSEECBSSCGGGGGG---------------------------TT
T ss_pred             CCEEEEEeCC----------CCC-cHHHH-HHHh--cCeEEeccccccCCC---------------------------CC
Confidence            2233333320          011 12222 2222  388888887664410                           00


Q ss_pred             chhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHHH
Q psy13922        449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~  505 (509)
                         .....+...|+....+.+        ++|+++.  ++++++++++++|++++++++
T Consensus       382 ---~~~~~l~~~g~~~~~~~~--------~iRis~~~~~t~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          382 ---RPSPVLLSCGIPVDVARN--------AVRLSVGRSTTRAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             ---SCCHHHHHTTCCHHHHTT--------EEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CccHHHHhcCCCccccCc--------eEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence               000111111111001112        8999999  489999999999999987764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.94  E-value=7.1e-26  Score=237.97  Aligned_cols=212  Identities=10%  Similarity=0.093  Sum_probs=142.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      ||.|++++.+++.+... .     ...+..+.+.++++++.+.++.  ..+ |++|+|+++|+..+++.++..    |.+
T Consensus        67 ~p~v~~A~~~~~~~~~~-~-----~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~  137 (452)
T 3n5m_A           67 RKELAEAAYKQLQTLSY-F-----PMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANETAFKIARQYYAQKGEP  137 (452)
T ss_dssp             CHHHHHHHHHHHTTCCC-C-----CTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CHHHHHHHHHHHHhcCC-c-----ccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            78999999999987221 1     1123344555666665555553  334 999999999999999998721    111


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCCCCCC-C---------HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESKQWGL-P---------ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-d---------~~~L~~~i~~~~~~~~~  159 (509)
                      +++.|++..|+|+++.......+.             .+..++......+.. |         ++.|++.+++... .++
T Consensus       138 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~~  216 (452)
T 3n5m_A          138 HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELS-ETI  216 (452)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCG-GGE
T ss_pred             CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCC-CCE
Confidence            234999999999987765554432             133333211111111 2         8999999982111 157


Q ss_pred             eEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        160 RAIVIINP-GNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       160 ~~ivi~~p-~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++|+++.+ +| ||.++ +++++++|.++|++||+++|+||+|.+|...+.  ......  .++.+     +   +.+||
T Consensus       217 ~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~~~~~--~~~~~-----d---i~t~s  283 (452)
T 3n5m_A          217 AAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK--AFGFMN--YDVKP-----D---IITMA  283 (452)
T ss_dssp             EEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--TTCCC-----S---EEEEC
T ss_pred             EEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc--cchhhh--cCCCC-----C---EEeec
Confidence            78888777 89 99765 888899999999999999999999999876542  211111  11111     1   33789


Q ss_pred             cccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        238 KGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       238 K~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |.+ | .| +|+||++   +++++++.+.+
T Consensus       284 K~l-~-~G~~~ig~~~---~~~~i~~~~~~  308 (452)
T 3n5m_A          284 KGI-T-SAYLPLSATA---VKREIYEAFKG  308 (452)
T ss_dssp             GGG-G-TTSSCCEEEE---EEHHHHGGGCS
T ss_pred             ccc-c-CCCcceEEEE---ECHHHHHHHhh
Confidence            999 5 59 9999998   79999988843

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.94  E-value=2.8e-26  Score=238.94  Aligned_cols=317  Identities=10%  Similarity=0.093  Sum_probs=207.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-------C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-------D   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~   99 (509)
                      |+.+++++.+++++..... ..|.     .++++++++.+.+.+|    .++|++|+|+++|+..+++.++.       +
T Consensus        75 ~p~v~~ai~~~~~~~~~~~-~~~~-----~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~~~~~~~~~~  144 (420)
T 2pb2_A           75 HPALVEALKSQGETLWHTS-NVFT-----NEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLARHYACVRHSP  144 (420)
T ss_dssp             CHHHHHHHHHHHTTCCCCC-TTSC-----CHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhccccc-CccC-----CHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence            7899999999988732111 1132     3345555555544444    57999999999999999999875       4


Q ss_pred             CCCCCCeEEEcCCCChhHHHH-HHhcCCE------------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922        100 VDGKKPGVLIPIPQYPLYSAS-LAEFNME------------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~-~~~~g~~------------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                      |+   +.|+++.|+|+++... +...|.+            +..++.       .|++.|++.+++     ++++|++++
T Consensus       145 g~---~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~-----~~~~vi~~p  209 (420)
T 2pb2_A          145 FK---TKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDD-----HTCAVVVEP  209 (420)
T ss_dssp             TC---CEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCT-----TEEEEEECS
T ss_pred             CC---CEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhcc-----CceEEEEeC
Confidence            42   3899999999887544 3444543            444442       279999998876     799999988


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        167 PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       167 p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      ++|++|. +++.+++++|.++|++||+++|+||+|.+|.+.+.  ..++...  +..     .+++   ||||.+ | +|
T Consensus       210 ~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~--~~~~~~~--~~~-----~dii---t~sK~l-~-~G  275 (420)
T 2pb2_A          210 IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD--LFAYMHY--GVT-----PDIL---TSAKAL-G-GG  275 (420)
T ss_dssp             EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHHH--TCC-----CSEE---EECGGG-G-TT
T ss_pred             CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc--HHHHHhc--CCC-----CCeE---Eecccc-c-CC
Confidence            8998884 69999999999999999999999999988766542  2222211  111     1244   789999 6 89


Q ss_pred             CeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        246 LRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      +|+||++   .++++++.+..... ...+.+.+++.+                              +.+++..+.+   
T Consensus       276 ~~iG~~~---~~~~l~~~l~~~~~~~t~~~~~~~~aa------------------------------~~a~L~~~~~---  319 (420)
T 2pb2_A          276 FPVSAML---TTQEIASAFHVGSHGSTYGGNPLACAV------------------------------AGAAFDIINT---  319 (420)
T ss_dssp             SCCEEEE---ECHHHHTTCC----CCEECCCHHHHHH------------------------------HHHHHHHHSS---
T ss_pred             CceEEEE---EhHHHHHhhcCCCcCcccCcCHHHHHH------------------------------HHHHHHHHHh---
Confidence            9999998   57778776654222 233445551111                              2222222110   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHH
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI----EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFE  400 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  400 (509)
                                   +.+.+.++++++++.+.|+++    |.+....+. |.++|+++..+.         + .....+. .
T Consensus       320 -------------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~v~~~~~~---------~-~~~~~l~-~  374 (420)
T 2pb2_A          320 -------------PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGM-GLLIGAELKPKY---------K-GRARDFL-Y  374 (420)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE-TTEEEEEECGGG---------T-TCHHHHH-H
T ss_pred             -------------ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-ceEEEEEECCCc---------h-HHHHHHH-H
Confidence                         244556666666666666553    333334444 445565554110         0 1234444 4


Q ss_pred             HHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEE
Q psy13922        401 LLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFR  480 (509)
Q Consensus       401 ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R  480 (509)
                      .|.++||.+.|+.                                                    ++          ++|
T Consensus       375 ~l~~~Gi~v~~~~----------------------------------------------------~~----------~iR  392 (420)
T 2pb2_A          375 AGAEAGVMVLNAG----------------------------------------------------AD----------VMR  392 (420)
T ss_dssp             HHHHTTEECEESS----------------------------------------------------TT----------EEE
T ss_pred             HHHHCCCEEEeCC----------------------------------------------------CC----------EEE
Confidence            4445899998753                                                    12          899


Q ss_pred             EEe--ecChHHHHHHHHHHHHHHHHHH
Q psy13922        481 TTI--LPQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       481 ls~--~~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      +++  ..+++++++++++|+++++++.
T Consensus       393 l~~~~~~t~eei~~~~~~l~~~l~~~~  419 (420)
T 2pb2_A          393 FAPSLVVEEADIHEGMQRFAQAVGKVV  419 (420)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            995  4899999999999999987653

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.94  E-value=6.3e-25  Score=228.73  Aligned_cols=296  Identities=13%  Similarity=0.125  Sum_probs=205.4

Q ss_pred             CCCCCCC--HHHHHHHHHHHhcccCCCcccCCC-CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         21 FDDPRFP--DDVKQRAQAVLDGCRGQSVGSYTD-SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        21 ~~~~~~p--~~v~~a~~~~l~~~~~~~~~~Y~~-~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      .+.|+++  +.+++++.+.+..   +   .|++ ..+..++|++++++++        .++|++|+|+++++..+++++.
T Consensus        23 ~~~p~~~~p~~~~~a~~~~~~~---~---~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~   88 (424)
T 2po3_A           23 VGRPNRIDRARLYERLDRALDS---Q---WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG   88 (424)
T ss_dssp             TTCCCCCCHHHHHHHHHHHHHH---T---CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT
T ss_pred             ccCCCCCChHHHHHHHHHHHhc---C---CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC
Confidence            3677774  4899999888876   2   3777 7888999999999993        2589999999999999999985


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                       +||    .|+++.|+|.++...+...|++++.++.+++ ++.+|++.|++.+++     ++++|++++   |||...  
T Consensus        89 -~gd----~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~---~tG~~~--  152 (424)
T 2po3_A           89 -LTG----EVIMPSMTFAATPHALRWIGLTPVFADIDPD-TGNLDPDQVAAAVTP-----RTSAVVGVH---LWGRPC--  152 (424)
T ss_dssp             -CCS----EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TSSBCHHHHGGGCCT-----TEEEEEEEC---GGGCCC--
T ss_pred             -CCC----EEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhhCc-----CCcEEEEEC---CCCCcC--
Confidence             666    9999999999999999999999999998753 578899999988876     789988864   899874  


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCC-cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQ-DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                       ++++|+++|+++|++||+|++|. ++.+++    .++..          ..+ +++.||||.. +++|.|+||++.  .
T Consensus       153 -~l~~i~~la~~~~~~li~Dea~~~g~~~~~----~~~~~----------~~d-i~~~S~sk~K-~l~~~~~G~~v~--~  213 (424)
T 2po3_A          153 -AADQLRKVADEHGLRLYFDAAHALGCAVDG----RPAGS----------LGD-AEVFSFHATK-AVNAFEGGAVVT--D  213 (424)
T ss_dssp             -CHHHHHHHHHHTTCEEEEECTTCTTCEETT----EETTS----------SSS-EEEEECCTTS-SSCCSSCEEEEE--S
T ss_pred             -CHHHHHHHHHHcCCEEEEECccccCCeECC----eeccc----------ccC-EEEEeCCCCC-CccCCCCeEEEe--C
Confidence             59999999999999999999999 465542    11110          112 6677999555 466789999983  3


Q ss_pred             CHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        257 DPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++++++.+...... ............+     ..+                    .+.+....+           ...+
T Consensus       214 ~~~l~~~l~~~~~~~~~~~~~~~~~g~~-----~~~--------------------~~~~aa~~l-----------~~~~  257 (424)
T 2po3_A          214 DADLAARIRALHNFGFDLPGGSPAGGTN-----AKM--------------------SEAAAAMGL-----------TSLD  257 (424)
T ss_dssp             CHHHHHHHHHHHBTTTTCTTCCTTCCCB-----CCC--------------------CHHHHHHHH-----------HHHH
T ss_pred             CHHHHHHHHHHHhcCccccccccccCcC-----CCc--------------------CHHHHHHHH-----------HHHH
Confidence            38999988776542 1111110000000     000                    111111111           1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCce---eEEe-ecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGA---MYAF-PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g---~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      +++...+..+++++++.+.|.++|++.+.. +.++   +++| +.++  ...      .+. +..+ +.+.|.++||.+.
T Consensus       258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~--~~~------~~~-~~~~-l~~~L~~~gI~v~  327 (424)
T 2po3_A          258 AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEID--EAT------TGI-HRDL-VMEVLKAEGVHTR  327 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEEC--HHH------HSS-CHHH-HHHHHHHTTEECB
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEEC--Ccc------chh-hHHH-HHHHHHHCCCcee
Confidence            356677778888888999999888888765 4443   2333 4332  200      022 2333 4566778899998


Q ss_pred             c
Q psy13922        411 P  411 (509)
Q Consensus       411 p  411 (509)
                      +
T Consensus       328 ~  328 (424)
T 2po3_A          328 A  328 (424)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.94  E-value=5.3e-26  Score=234.35  Aligned_cols=211  Identities=15%  Similarity=0.153  Sum_probs=146.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      |+.+++++.+.+...   .+. |.  .+..++++++++++.+.+|    .++|++|+|+++++..+++.+...    |. 
T Consensus        54 ~p~v~~a~~~~~~~~---~~~-~~--~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~~al~~~~~~~~~~g~-  122 (395)
T 3nx3_A           54 HAKFNAKIKAQVDKL---LHT-SN--LYYNENIAAAAKNLAKASA----LERVFFTNSGTESIEGAMKTARKYAFNKGV-  122 (395)
T ss_dssp             CHHHHHHHHHHHTTC---SCC-CT--TSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHhc---ccc-cc--ccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhccCC-
Confidence            789999999998772   211 21  1223455555555555544    579999999999999999887643    10 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcC-------------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFN-------------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      +++.|++..|+|+++.......+             .++..++.       .|++.|++.+++     ++++|+++.++|
T Consensus       123 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~-----~~~~v~~~~~~~  190 (395)
T 3nx3_A          123 KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNE-----KTCAIILESVQG  190 (395)
T ss_dssp             TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCT-----TEEEEEEESEEC
T ss_pred             CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccC-----CeEEEEEeCccC
Confidence            13399999999998765444332             34444442       278999988875     788999887777


Q ss_pred             CCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ++|.. ++++++++|.++|++||+++|+||+|.+|...+.  ......  .+..     .+   +.|+||.+ | +|+|+
T Consensus       191 ~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~~--~~~~-----~d---~~t~sK~~-~-~G~~~  256 (395)
T 3nx3_A          191 EGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--FFAYEH--AQIL-----PD---IMTSAKAL-G-CGLSV  256 (395)
T ss_dssp             TTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTCC-----CS---EEEECGGG-T-TTSCC
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--chhHHh--cCCC-----CC---EEEecccc-c-CCCce
Confidence            77765 7899999999999999999999999998865432  111111  1111     11   34789999 5 59999


Q ss_pred             EEEeeecCCHHH-HHHHHHhhh-cccCcchh
Q psy13922        249 GYSEVINLDPGV-KAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       249 G~v~~~~~~~~~-~~~l~~~~~-~~~~~~~~  277 (509)
                      ||++   .++++ ++.+..... ...+.+.+
T Consensus       257 G~~~---~~~~~~~~~~~~~~~~~~~~~~~~  284 (395)
T 3nx3_A          257 GAFV---INQKVASNSLEAGDHGSTYGGNPL  284 (395)
T ss_dssp             EEEE---ECHHHHHHHSCTTCCSSCBSCCHH
T ss_pred             EEEE---EchhhhhhhcCCcccCCCCCCCHH
Confidence            9998   68888 787765432 33445555

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.94  E-value=7.8e-26  Score=236.22  Aligned_cols=205  Identities=9%  Similarity=-0.002  Sum_probs=142.1

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVDGKK  104 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~~~  104 (509)
                      ||.+++++.+++.+   .....| +.....++++.+++++    +   .+++|++|+|+++++..+++.++.  +++   
T Consensus        73 ~p~v~~a~~~~~~~---~~~~~~-~~~~~~~l~~~la~~~----~---~~~~v~~~~sGsea~~~ai~~a~~~~~~~---  138 (434)
T 3l44_A           73 HPHITKAITTAAEN---GVLYGT-PTALEVKFAKMLKEAM----P---ALDKVRFVNSGTEAVMTTIRVARAYTGRT---  138 (434)
T ss_dssp             CHHHHHHHHHHHHH---CSCCSS-CCHHHHHHHHHHHHHC----T---TCSEEEEESSHHHHHHHHHHHHHHHHCCC---
T ss_pred             CHHHHHHHHHHHHh---CcCCCC-CCHHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHHHHHHHHHHhhCCC---
Confidence            79999999999987   333324 3445567777777765    2   468999999999999999998865  445   


Q ss_pred             CeEEEcCCCChhHHHHHHhcCCE-EEEEecCCCCCC------------CCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922        105 PGVLIPIPQYPLYSASLAEFNME-QIGYYLDESKQW------------GLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~------------~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                       .|++..|+|+++...+...+.. ...+.......+            .-|++.|++.+++...  ++++|+++.++|++
T Consensus       139 -~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~~~vi~ep~~~~~  215 (434)
T 3l44_A          139 -KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH--EVAAILVEPIVGNF  215 (434)
T ss_dssp             -EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG--GEEEEEECSSBCTT
T ss_pred             -EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC--CEEEEEEcCCCCCC
Confidence             9999999999876544433221 111111100000            0189999999985311  46666666666677


Q ss_pred             CCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        172 GQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       172 G~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      |.+. +++++++|.++|++||+++|+||+|.+| ..+  ........  +..+     +   +.|+||.+ | +|+|+||
T Consensus       216 G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g--~~~~~~~~--~~~~-----d---i~t~sK~~-~-~G~~iG~  280 (434)
T 3l44_A          216 GIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFM--YGGAQDLL--GVTP-----D---LTALGKVI-G-GGLPIGA  280 (434)
T ss_dssp             SCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSS--SSCHHHHH--TCCC-----S---EEEEEGGG-G-TTSSCEE
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecc--ccHHHHHc--CCCC-----C---eeehhhhh-c-CCcCeee
Confidence            7655 8899999999999999999999999998 443  22222221  1111     1   44789999 6 8999999


Q ss_pred             EeeecCCHHHHHHHHH
Q psy13922        251 SEVINLDPGVKAMLHK  266 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~  266 (509)
                      ++   +++++++.+.+
T Consensus       281 ~~---~~~~i~~~~~~  293 (434)
T 3l44_A          281 YG---GKKEIMEQVAP  293 (434)
T ss_dssp             EE---ECHHHHTTBTT
T ss_pred             EE---EcHHHHHhhcc
Confidence            97   79999988765

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.94  E-value=4.8e-25  Score=228.30  Aligned_cols=302  Identities=14%  Similarity=0.048  Sum_probs=194.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCC---CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQ---SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~---~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+.+|+.+++++.+.+......   ....|.......++++.+.+.+.+.+|  .++++|++|+| ++++..+++++++
T Consensus        33 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG-t~a~~~~~~~~~~  109 (417)
T 3n0l_A           33 SENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG-SQANQGVYAALIN  109 (417)
T ss_dssp             TCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHSC
T ss_pred             ccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH-HHHHHHHHHHhcC
Confidence            44556999999998887542110   011244445555666655556655556  35567888888 7999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHH---HHHh--cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSA---SLAE--FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~---~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      +||    +|+++.|+|.++..   .+..  .+..++.++.+  .++.+|++.|++.+++.    ++++|++++|+|  |.
T Consensus       110 ~gd----~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~--G~  177 (417)
T 3n0l_A          110 PGD----KILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE----KPKLIVCGASAY--AR  177 (417)
T ss_dssp             TTC----EEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH----CCSEEEECCSSC--CS
T ss_pred             CCC----EEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc----CCeEEEECCccc--Cc
Confidence            998    99999999987654   3333  34556666665  35689999999999843    799999888887  78


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCC-cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQ-DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .++   +++|.++|++||+++|+|++|. ++.+.+. ....+.           .. .+++.|+||.+   +|.|+||++
T Consensus       178 ~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~~~~-----------~~-di~~~s~sK~l---~g~~~G~~~  238 (417)
T 3n0l_A          178 VID---FAKFREIADEIGAYLFADIAHIAGLVVAGE-HPSPFP-----------YA-HVVSSTTHKTL---RGPRGGIIM  238 (417)
T ss_dssp             CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCCTT-----------TC-SEEEEESSTTT---CSCSCEEEE
T ss_pred             cCC---HHHHHHHHHHcCCEEEEECccchhhhhccc-CCCccc-----------cc-eEEEeeCcccc---CCCCeeEEE
Confidence            877   8999999999999999999964 3333221 111110           11 35677999977   578899997


Q ss_pred             eecCCHHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        253 VINLDPGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      .  .++++++.+.......  .+++..                                  ..+++..++.         
T Consensus       239 ~--~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~aa~~~a~~---------  273 (417)
T 3n0l_A          239 T--NDEELAKKINSAIFPGIQGGPLMH----------------------------------VIAAKAVGFK---------  273 (417)
T ss_dssp             E--SCHHHHHHHHHHHTTTTCSSCCHH----------------------------------HHHHHHHHHH---------
T ss_pred             E--CCHHHHHHHhhhhCCcccCCcHHH----------------------------------HHHHHHHHHH---------
Confidence            3  3489999887765422  222222                                  2222222211         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      ....+++++.++.+.++++.+.+.|.+. |+.+.. +..+.++|+++..+          ++  +...+..+|+++||.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~l~~~gi~v  340 (417)
T 3n0l_A          274 FNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLDR----------EF--SGKDADLALGNAGITA  340 (417)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTS----------SS--CHHHHHHHHHHTTEEC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEcccC----------CC--CHHHHHHHHHHcCeEE
Confidence            1112336778888888899999999885 887764 34455677666411          11  2333677888899999


Q ss_pred             ecCCCC
Q psy13922        410 VPGAGF  415 (509)
Q Consensus       410 ~pg~~f  415 (509)
                      .++..+
T Consensus       341 ~~~~~~  346 (417)
T 3n0l_A          341 NKNTVP  346 (417)
T ss_dssp             EECCCT
T ss_pred             eccccC
Confidence            986543

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.94  E-value=4.6e-26  Score=238.36  Aligned_cols=212  Identities=10%  Similarity=0.034  Sum_probs=146.5

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVDGK  103 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~~  103 (509)
                      -|+.+++++.+++...     ..|+...|..++++++++.+.+.++... +++|++|+|+++++..+++.++.  +++  
T Consensus        60 ~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~ggsea~~~al~~~~~~~~~~--  131 (439)
T 3dxv_A           60 GHPAIVAAVSAAAANP-----AGATILSASNAPAVTLAERLLASFPGEG-THKIWFGHSGSDANEAAYRAIVKATGRS--  131 (439)
T ss_dssp             SCHHHHHHHHHHHHSC-----SCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEEESSHHHHHHHHHHHHHHHHSCC--
T ss_pred             CCHHHHHHHHHHHHhc-----cCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEEeCCHHHHHHHHHHHHHHHhCCC--
Confidence            4789999999998872     2255455667788888888877765322 16999999999999999998632  444  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCE-E--------------EEEecCCCCCCCC-----CHHHHHHHHHhhhccCCceEEE
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNME-Q--------------IGYYLDESKQWGL-----PISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~-~--------------~~v~~~~~~~~~~-----d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                        .|++.+|.|+++...+...+.. .              ..++.+..  +..     |++.|++.+++.. ..++++|+
T Consensus       132 --~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~-~~~~~~vi  206 (439)
T 3dxv_A          132 --GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY--RNDPTGDAILTLLTEKLAAVP-AGSIGAAF  206 (439)
T ss_dssp             --EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB--TTBTTSHHHHHHHHHHHHTSC-TTCEEEEE
T ss_pred             --EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc--cccccHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence              8999999998876655544322 1              11222111  111     6899999995110 12678888


Q ss_pred             EeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINPGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      ++.++|++|.+. +++++++|.++|++||+++|+||+|.+|...+.  ......  .+..     .+++   ||||.+ |
T Consensus       207 ~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~--~~~~~~--~~~~-----~di~---s~sK~~-~  273 (439)
T 3dxv_A          207 IEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR--LHCFEH--EGFV-----PDIL---VLGKGL-G  273 (439)
T ss_dssp             ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS--SSGGGG--TTCC-----CSEE---EECGGG-G
T ss_pred             EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHHHh--cCCC-----CCEE---EEcchh-c
Confidence            888888888755 555699999999999999999999998765432  111111  1111     1233   889999 5


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHHh
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~~  267 (509)
                       +|+|+||++   +++++++.+...
T Consensus       274 -~G~riG~~~---~~~~~~~~~~~~  294 (439)
T 3dxv_A          274 -GGLPLSAVI---APAEILDCASAF  294 (439)
T ss_dssp             -TTSCCEEEE---EEHHHHTSCSSS
T ss_pred             -CCcceEEEE---ECHHHHhhhcCC
Confidence             699999998   788988877654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-25  Score=239.02  Aligned_cols=349  Identities=12%  Similarity=0.064  Sum_probs=233.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-----DVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~gd  101 (509)
                      ++.+.+.+.+++..........|....|..++++++++++.+.+|.+..++++++|+|+++++.++++++++     +|-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~  156 (497)
T 3mc6_A           77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGI  156 (497)
T ss_dssp             CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            467888888888764333334466677888999999999999989776688999999999999999999975     451


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                       .++.|+++.|+|..+...++..|++++.++.++ .++.+|++.|++++++     ++++|++++|+||||.+.+   ++
T Consensus       157 -~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~-----~~~~v~~~~p~nptG~~~~---l~  226 (497)
T 3mc6_A          157 -TEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINK-----NTVLLVGSAPNFPHGIADD---IE  226 (497)
T ss_dssp             -SSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCS-----SEEEEEEETTCTTTCCCCS---CT
T ss_pred             -CCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhh-----CCEEEEEECCCCCCCcCCC---HH
Confidence             223999999999999999999999999999876 2468999999999876     7999999999999999977   88


Q ss_pred             HHHHHHHHCCcEEEEcccCCccccc----CCC-ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYA----EGS-KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      +|.++|+++|+++|+|++|..+...    .+. ..+++.       ....+.+++ +.|++|.+.  +|.++|++++  .
T Consensus       227 ~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~-------~~~~g~d~~-~~s~~K~l~--~~~~~g~~~~--~  294 (497)
T 3mc6_A          227 GLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-------FRVPGVTSI-SCDTHKYGF--APKGSSVIMY--R  294 (497)
T ss_dssp             TTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS-------TTSTTCCEE-EEETTTTTC--CCSSCEEEEC--S
T ss_pred             HHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc-------ccCCCCcEE-EECchhhcC--CCCCceeEEe--c
Confidence            8999999999999999999865432    000 000110       000122344 558899863  7788999973  4


Q ss_pred             CHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        257 DPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       257 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      ++.+. ....... .+.... .         ..+.+..             ........++..++.         .-...
T Consensus       295 ~~~~~-~~~~~~~~~~~~~~-~---------~~~~~~g-------------~~~~~~~~a~~aal~---------~l~~~  341 (497)
T 3mc6_A          295 NSDLR-MHQYYVNPAWTGGL-Y---------GSPTLAG-------------SRPGAIVVGCWATMV---------NMGEN  341 (497)
T ss_dssp             SHHHH-TTTSCCBTTCTTSC-B---------CCSSSCS-------------SCBHHHHHHHHHHHH---------HHHHH
T ss_pred             CHHHH-hhhhcccccccCCC-c---------CCcCccc-------------CCcchhHHHHHHHHH---------HHhHH
Confidence            44333 2211111 110000 0         0000000             000000111111111         00112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCC
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNS-IEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGA  413 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~  413 (509)
                      .+++..+...++++++.+.|++ +||+++. ++.++++.| ...            +. +..+ +...|.++||.+.++.
T Consensus       342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~-~~~------------~~-~~~~-l~~~L~~~Gi~v~~~~  406 (497)
T 3mc6_A          342 GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISF-SSK------------TL-NIHE-LSDRLSKKGWHFNALQ  406 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEE-ECT------------TT-THHH-HHHHHHTTTCBCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEE-eCC------------CC-CHHH-HHHHHHhCCEEEecCC
Confidence            3577788888899999999999 7999887 456666655 222            11 2333 4556667799887543


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKA  492 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~  492 (509)
                      .                                                   +.          .+|+++. .+.+++++
T Consensus       407 ~---------------------------------------------------~~----------~~ri~~~~~t~e~i~~  425 (497)
T 3mc6_A          407 K---------------------------------------------------PV----------ALHMAFTRLSAHVVDE  425 (497)
T ss_dssp             S---------------------------------------------------SC----------CEEEECCTTTTCTHHH
T ss_pred             C---------------------------------------------------CC----------eEEEEEeCCCHHHHHH
Confidence            1                                                   11          4677776 78888888


Q ss_pred             HHHHHHHHHHHHHh
Q psy13922        493 MLEKFREFHEEFLA  506 (509)
Q Consensus       493 ~~~~l~~~~~~~~~  506 (509)
                      ++++|+++++++.+
T Consensus       426 ~~~~L~~~l~~~~~  439 (497)
T 3mc6_A          426 ICDILRTTVQELKS  439 (497)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888876643

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=5.6e-25  Score=224.65  Aligned_cols=350  Identities=13%  Similarity=0.102  Sum_probs=227.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      +.|.+++ +.+++.+.+..   .   .|.+..+..+++++++++++        .+++++++|+++++..+++++ .++|
T Consensus        14 ~~~~~~~-~~~~~~~~~~~---~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~~~~~~g   78 (374)
T 3uwc_A           14 QFADIEP-YLNDLREFIKT---A---DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKMLNIGAG   78 (374)
T ss_dssp             HTSSCHH-HHHHHHHHHHH---T---CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCchH-HHHHHHHHHHc---C---CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCC
Confidence            5677877 88999888876   2   27778888999999999983        238899999999999999999 8888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++.|+|.++...++..|.+++.++.+  .++.+|++.+++.+++     ++++|+   |+||||...+   +
T Consensus        79 d----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~-----~~~~v~---~~n~~G~~~~---~  141 (374)
T 3uwc_A           79 D----EVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD-----KTKAIM---PVHYTGNIAD---M  141 (374)
T ss_dssp             C----EEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT-----TEEEEC---CBCGGGCCCC---H
T ss_pred             C----EEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC-----CceEEE---EeCCcCCcCC---H
Confidence            8    99999999999999999999999999987  3468899999998876     688877   8999999876   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecCCH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++|.++|+++|+++|+|++|..+..-.......             .. .+++.|+|  |.+ |.+|. +|+++.  .++
T Consensus       142 ~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~-------------~~-d~~~~s~~~~K~l-~~~g~-~g~~~~--~~~  203 (374)
T 3uwc_A          142 PALAKIAKKHNLHIVEDACQTILGRINDKFVGS-------------WG-QFACFSLHPLKNL-NVWSD-AGVIIT--HSD  203 (374)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTEETTS-------------SS-SEEEEECSSSSSS-CCSSC-CEEEEE--SCH
T ss_pred             HHHHHHHHHcCCEEEEeCCCccCceeCCeeccc-------------cc-cEEEEeCCCCCcC-Cccce-eEEEEe--CCH
Confidence            899999999999999999998754321111110             01 34456866  999 54475 788763  677


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      .+.+.+.......... ....       ....++.                  ....+..++.         ....+.++
T Consensus       204 ~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~------------------~~~~~~aa~~---------~~~~~~~~  248 (374)
T 3uwc_A          204 EYAEKLRLYRNHGLIN-RDVC-------VEYGINC------------------RMDTIQAVIA---------NRLMNQLE  248 (374)
T ss_dssp             HHHHHHHHHTBTTEEE-TTEE-------SSCCCBC------------------BCCHHHHHHH---------HHHGGGHH
T ss_pred             HHHHHHHHHHhcCccc-cCcc-------ccccccC------------------CCCHHHHHHH---------HHHHHHHH
Confidence            8888887665411110 0000       0000000                  0011111100         00112256


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC-Ceec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEG-MSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      +..+..+++.+.+.+.|.++++ +.+. .+.++...|..+.+..           .+... +.+.|.++||.+.++....
T Consensus       249 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-l~~~L~~~gi~v~~~~~~~  316 (374)
T 3uwc_A          249 TITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----------KYRDQ-LFQYLKDNGIEVKIHYPIA  316 (374)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----------TTHHH-HHHHHHHTTBCCBCSCSSC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-----------CCHHH-HHHHHHHCCCccccCCCCc
Confidence            6777778888889999998866 6654 2333333332222110           12333 4566677899999875222


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAML  494 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~  494 (509)
                      ......+.++...              ....|...                     ......+|+++.  +++++|+.++
T Consensus       317 ~~~~~~~~~~~~~--------------~~~~~~~~---------------------~~~~~~lrl~~~~~~t~edi~~~~  361 (374)
T 3uwc_A          317 MHLQPAAKSLGYQ--------------QGDFPMAE---------------------KHGEAVITLPAHPYLTEEEINYII  361 (374)
T ss_dssp             GGGSGGGGGGCCC--------------TTSCHHHH---------------------HHHHHEEEECCCTTSCHHHHHHHH
T ss_pred             cccChhhhhcCCc--------------cCCCccHH---------------------HHHhCEEEccCCCCCCHHHHHHHH
Confidence            2000000000000              00000000                     000128999988  7999999999


Q ss_pred             HHHHHHHHH
Q psy13922        495 EKFREFHEE  503 (509)
Q Consensus       495 ~~l~~~~~~  503 (509)
                      +.|++++++
T Consensus       362 ~~l~~~l~~  370 (374)
T 3uwc_A          362 KKVREFYLE  370 (374)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999864

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.94  E-value=1.3e-24  Score=221.71  Aligned_cols=354  Identities=12%  Similarity=0.079  Sum_probs=227.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh---h
Q psy13922         21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL---I   97 (509)
Q Consensus        21 ~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~   97 (509)
                      ++.+.+|+.+++++.+.+..   ..   |.+.....+++++++++++      .  +++++|+|+++++..+++++   .
T Consensus         6 ~~~~~~~~~v~~a~~~~~~~---~~---~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~   71 (375)
T 2fnu_A            6 YSEPCLDKEDKKAVLEVLNS---KQ---LTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFS   71 (375)
T ss_dssp             SCCCCCCHHHHHHHHHHHTS---SC---CSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCC
T ss_pred             cCCCCCCHHHHHHHHHHHHc---Cc---ccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccC
Confidence            35688999999999999876   22   3345567899999999983      2  28999999999999999999   7


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||    +|+++.|+|.++...++..|++++.++.++++  .+|++.|++.+++     ++++|++++|   ||.+.+ 
T Consensus        72 ~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~-----~~~~v~~~~~---tG~~~~-  136 (375)
T 2fnu_A           72 ADRN----EIITTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINE-----RTKAIVSVDY---AGKSVE-  136 (375)
T ss_dssp             TTSC----EEEECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCT-----TEEEEEEECG---GGCCCC-
T ss_pred             CCCC----EEEECCCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCc-----CceEEEEeCC---cCCccC-
Confidence            7887    99999999999999999999999999987653  6899999988876     7888888776   999987 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeec
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~  255 (509)
                        +++|.++|+++|+++|+|++|..+.....   ..       ++.   .. .+.+.|+|  |.+ |. |  +|++++ +
T Consensus       137 --l~~i~~l~~~~~~~li~D~a~~~~~~~~~---~~-------~~~---~~-~i~~~s~s~~K~~-~~-g--~g~~~~-~  195 (375)
T 2fnu_A          137 --VESVQKLCKKHSLSFLSDSSHALGSEYQN---KK-------VGG---FA-LASVFSFHAIKPI-TT-A--EGGAVV-T  195 (375)
T ss_dssp             --HHHHHHHHHHHTCEEEEECTTCTTCEETT---EE-------TTS---SS-SEEEEECCTTSSS-CC-S--SCEEEE-E
T ss_pred             --HHHHHHHHHHcCCEEEEECccccCCeECC---ee-------ccc---cC-CeEEEeCCCCCCc-cc-c--CceEEE-e
Confidence              88999999999999999999987543211   11       110   01 25566888  999 64 7  566652 2


Q ss_pred             CCHHHHHHHHHhhhcccCcchhhhhccccccCC--CCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHH
Q psy13922        256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD--PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       256 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  333 (509)
                      .++++++.+......... ...     +..++.  ..+.....+              .+.++...             .
T Consensus       196 ~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~--------------~~~a~~~~-------------~  242 (375)
T 2fnu_A          196 NDSELHEKMKLFRSHGML-KKD-----FFEGEVKSIGHNFRLNE--------------IQSALGLS-------------Q  242 (375)
T ss_dssp             SCHHHHHHHHHHTBTTEE-ESS-----SSCEEESSCCCBCCCCH--------------HHHHHHHH-------------H
T ss_pred             CCHHHHHHHHHHHhcCCc-ccc-----ccccccccccccCCCCH--------------HHHHHHHH-------------H
Confidence            357888888765431110 000     000000  000000000              01111110             1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC----Cc-eeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeE
Q psy13922        334 SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV----QG-AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGIC  408 (509)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~  408 (509)
                      .+++++..+..+++++++.+.|+++|++++..+    .+ +++.|+.++..          +..+... +...|.++||.
T Consensus       243 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-l~~~L~~~gi~  311 (375)
T 2fnu_A          243 LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK----------FFTCKKL-ILESLHKRGIL  311 (375)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG----------GGGGHHH-HHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc----------ccchHHH-HHHHHHHCCCC
Confidence            123667788888999999999999888887654    12 34446555411          0101333 34555678999


Q ss_pred             EecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cC
Q psy13922        409 IVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQ  486 (509)
Q Consensus       409 v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~  486 (509)
                      +..+  |.+......++    .          .......|....             .+        ..++|+++.  ++
T Consensus       312 v~~~--~~p~~~~~~~~----~----------~~~~~~~~~~~~-------------~~--------~~~lRi~~~~~~t  354 (375)
T 2fnu_A          312 AQVH--YKPIYQYQLYQ----Q----------LFNTAPLKSAED-------------FY--------HAEISLPCHANLN  354 (375)
T ss_dssp             CBCC--CCCGGGSHHHH----H----------HHCCCCCHHHHH-------------HH--------HHEEEECCCTTCC
T ss_pred             cccc--ccccccchhhh----c----------CCCccCChHHHH-------------HH--------hCEEEecCCCCCC
Confidence            8832  22200000000    0          000000000000             00        128999998  58


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q psy13922        487 PEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       487 ~~~i~~~~~~l~~~~~~~~  505 (509)
                      +++++.++++|+++++++.
T Consensus       355 ~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          355 LESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999987653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.93  E-value=3.2e-25  Score=232.84  Aligned_cols=212  Identities=12%  Similarity=0.107  Sum_probs=138.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~  102 (509)
                      |+.+++++.+++...   .  .|....+..+.++++++++.+.++  ...++|++|+|+++|+..+++.++.    +|.+
T Consensus        62 ~p~v~~A~~~~~~~~---~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~  134 (448)
T 3dod_A           62 KKELDDAIKKQLGKI---A--HSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP  134 (448)
T ss_dssp             CHHHHHHHHHHHTTC---S--CCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc---c--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCC
Confidence            799999999999872   1  133334445677777777776654  3457999999999999999999876    4522


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC-------------EEEEEecCCCCCCCC-----------CHHHHHHHHHhhhccCC
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM-------------EQIGYYLDESKQWGL-----------PISELERSITEARKHCN  158 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-----------d~~~L~~~i~~~~~~~~  158 (509)
                      +++.|++..|+|+++.......+.             .+..++...  .|..           |++.|++.++...  .+
T Consensus       135 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~  210 (448)
T 3dod_A          135 EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY--VYRSESGDPDECRDQCLRELAQLLEEHH--EE  210 (448)
T ss_dssp             TCCEEEEEC-----------------------------CEEECCCC--CTTSSSCCHHHHHHHHHHHHHHHHHHHG--GG
T ss_pred             CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc--cccCCccchhhhhHHHHHHHHHHHHhCC--CC
Confidence            345999999999987655444332             122233221  1222           4788999987321  15


Q ss_pred             ceEEEEeCCC-CCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        159 PRAIVIINPG-NPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       159 ~~~ivi~~p~-NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                      +++|+++.++ |++|. ..+++++++|.++|++||++||+||+|.+|...+.  ......  .++.+     +   +.+|
T Consensus       211 ~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~a~~~--~~~~~-----d---i~t~  278 (448)
T 3dod_A          211 IAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK--MFACEH--ENVQP-----D---LMAA  278 (448)
T ss_dssp             EEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG--GTCCC-----S---EEEE
T ss_pred             EEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--hhhhhh--cCCCC-----C---EEEe
Confidence            6777777766 88884 67888899999999999999999999999876542  111111  11111     1   3378


Q ss_pred             ccccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        237 SKGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       237 SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      ||.+ | +| +|+||++   +++++++.+.+
T Consensus       279 sK~l-~-~G~~~ig~v~---~~~~~~~~~~~  304 (448)
T 3dod_A          279 GKGI-T-GGYLPIAVTF---ATEDIYKAFYD  304 (448)
T ss_dssp             CGGG-G-TTSSCCEEEE---EEHHHHHTTCS
T ss_pred             cccc-c-CCcCceEEEE---ECHHHHHHhhh
Confidence            9999 5 69 5999998   79999998865

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.93  E-value=3.6e-25  Score=232.31  Aligned_cols=212  Identities=11%  Similarity=0.082  Sum_probs=142.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--------
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--------   98 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------   98 (509)
                      |+.+++++.+.+....   ...+  ..+..++++++++.+.+.++  ..+++|++|+|+++++..+++.+..        
T Consensus        68 ~~~v~~a~~~~~~~~~---~~~~--~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~  140 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLD---YSPG--FQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQA  140 (449)
T ss_dssp             CHHHHHHHHHHTTTCS---CCCS--SSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhCC---Cccc--cccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            7999999999987732   1111  01223355555555555444  3577999999999999999998864        


Q ss_pred             CCCCCCCeEEEcCCCChhHHH-HHHhcC--------------CEEEEEecCCCCCC-CCC--------HHHHHHHHHhhh
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSA-SLAEFN--------------MEQIGYYLDESKQW-GLP--------ISELERSITEAR  154 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~-~~~~~g--------------~~~~~v~~~~~~~~-~~d--------~~~L~~~i~~~~  154 (509)
                      +++    .|++..|+|+++.. .+...|              ...+.+|.....+| ++|        ++.|++.+++..
T Consensus       141 ~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~  216 (449)
T 3a8u_X          141 TKT----KMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD  216 (449)
T ss_dssp             TCC----EEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC
T ss_pred             CCC----EEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC
Confidence            445    99999999998643 444333              33333332111111 256        999999997421


Q ss_pred             ccCCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEE
Q psy13922        155 KHCNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASF  233 (509)
Q Consensus       155 ~~~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i  233 (509)
                      . .++++|+++..+|+||. ..+++++++|.++|++||+++|+||+|.+|...+.  ...+...  +...     +++  
T Consensus       217 ~-~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~~~--~~~~-----di~--  284 (449)
T 3a8u_X          217 A-SNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS--MFGADSF--GVTP-----DLM--  284 (449)
T ss_dssp             G-GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHHHHH--TCCC-----SEE--
T ss_pred             C-CCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc--chhhhhc--CCCC-----CEE--
Confidence            0 14666665544678996 66799999999999999999999999988765432  2222221  1111     233  


Q ss_pred             EecccccCCCCC-CeeEEEeeecCCHHHHHHHHHh
Q psy13922        234 MSCSKGYMGECG-LRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       234 ~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~  267 (509)
                       |+||.+ | +| +|+||++   .++++++.+...
T Consensus       285 -s~sK~l-~-~G~~~~G~~~---~~~~~~~~l~~~  313 (449)
T 3a8u_X          285 -CIAKQV-T-NGAIPMGAVI---ASTEIYQTFMNQ  313 (449)
T ss_dssp             -EECGGG-G-TTSSCCEEEE---EEHHHHHHHHTC
T ss_pred             -EEcccc-c-CCCCceEEEE---ECHHHHHHhhcc
Confidence             889999 5 58 9999998   578898888753

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.93  E-value=1.6e-25  Score=227.89  Aligned_cols=319  Identities=13%  Similarity=0.131  Sum_probs=211.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCC--C---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-c-EEEeCCHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQ--S---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-D-VILSAGASDGIKSVLK   94 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~--~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~-i~~t~G~~~al~~~~~   94 (509)
                      ++...|+.+++++.+.+.+....  .   ..+|.  .+..++++++++.+.+.+|.  +++ + +++|+|++++++.++.
T Consensus        11 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~~~~~   86 (362)
T 2c0r_A           11 GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFAMIPM   86 (362)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHHHHHH
Confidence            44557899999999888652111  0   11122  23356777777777777674  443 5 5788999999999999


Q ss_pred             HhhcCCCCCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCC--CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         95 LLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDES--KQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        95 ~l~~~gd~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~--~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                      ++.++||    +|+++.+.+.+.  ...++..| +++.++.+.+  .++.+|.+.++  +++     ++++|++++|+||
T Consensus        87 ~l~~~gd----~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-----~t~~v~~~~~~n~  154 (362)
T 2c0r_A           87 NFLKEGQ----TANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-----NAAYLHLTSNETI  154 (362)
T ss_dssp             HHCCTTC----EEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-----TEEEEEEESEETT
T ss_pred             hcCCCCC----eEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-----CcCEEEEeCCcCc
Confidence            9999988    998887765543  46677789 9999988632  23345766654  443     7999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||..++  ++++|      +|+++|+|++|..+..     ..++.    +       .++ ++.|+||.+ |++|  +||
T Consensus       155 tG~~~~--~l~~i------~~~~vivD~a~~~~~~-----~~~~~----~-------~d~-~~~s~~K~~-g~~G--~G~  206 (362)
T 2c0r_A          155 EGAQFK--AFPDT------GSVPLIGDMSSDILSR-----PFDLN----Q-------FGL-VYAGAQKNL-GPSG--VTV  206 (362)
T ss_dssp             TTEECS--SCCCC------TTSCEEEECTTTTTSS-----CCCGG----G-------CSE-EEEETTTTT-CCSS--CEE
T ss_pred             cceecc--ccccc------CCCEEEEEChhhccCC-----ccchh----H-------CcE-EEEeccccc-cCcC--cEE
Confidence            999755  35555      8999999999987532     11211    1       124 456999999 7888  899


Q ss_pred             EeeecCCHHHHHHHHHhh-------------hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        251 SEVINLDPGVKAMLHKSI-------------SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      ++   .++++++.+.+..             ...++++..                                  .+.++.
T Consensus       207 l~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~----------------------------------~~~a~~  249 (362)
T 2c0r_A          207 VI---VREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSF----------------------------------GIYMVN  249 (362)
T ss_dssp             EE---EEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHH----------------------------------HHHHHH
T ss_pred             EE---EcHHHHhhccccCchHHhHHHHhhccCcCCCchHH----------------------------------HHHHHH
Confidence            98   5777665543210             011223332                                  344444


Q ss_pred             cccCCCCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCC-eecc---CCceeEEeecCCCCHHHHHHHhhcCC
Q psy13922        318 CVVNPPQPGEPSYEQFSR--EKQSVLDSLKQRAKMVADTFNSIEGM-SCNP---VQGAMYAFPQMKLPAKAIAKAKAEGK  391 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~---~~~g~~~~~~~~~~~~~~~~~~~~g~  391 (509)
                      .+++          ...+  .++++++.++++++++.+.|++++++ .+..   ..++.++|+.++  ...         
T Consensus       250 ~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------  308 (362)
T 2c0r_A          250 EVLK----------WIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLA--SEE---------  308 (362)
T ss_dssp             HHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECS--CHH---------
T ss_pred             HHHH----------HHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcC--Ccc---------
Confidence            4432          1112  36788899999999999999998436 6532   224455665553  110         


Q ss_pred             CCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCC
Q psy13922        392 CPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFG  471 (509)
Q Consensus       392 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (509)
                       +..++ ...|.++||.+.||..|.                                                  +    
T Consensus       309 -~~~~~-~~~L~~~gi~~~~g~~~~--------------------------------------------------~----  332 (362)
T 2c0r_A          309 -LEKEF-VKASEQEGFVGLKGHRSV--------------------------------------------------G----  332 (362)
T ss_dssp             -HHHHH-HHHHHHTTEESCBCCTTT--------------------------------------------------C----
T ss_pred             -hHHHH-HHHHHHCCCeeccCCCCC--------------------------------------------------C----
Confidence             13343 455677899888765331                                                  1    


Q ss_pred             CCCCceeEEEEee--cChHHHHHHHHHHHHHHHHH
Q psy13922        472 QVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       472 ~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                            ++|+|++  +++++++.+++.|+++++++
T Consensus       333 ------~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          333 ------GLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             ------SEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ------EEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                  7999998  58999999999998887643

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.93  E-value=1.6e-24  Score=224.73  Aligned_cols=301  Identities=14%  Similarity=0.078  Sum_probs=180.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccC-C-Cc-ccCCCCcchHHHHHHHH-HHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRG-Q-SV-GSYTDSPGIEIIRRHVA-QYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~-~-~~-~~Y~~~~g~~~lr~~va-~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      +.+.+|+.+++++.+.+...-. + .. ..|+.... .+..+.++ +.+.+.+|.  +. ..++++|+++++..+++++.
T Consensus        40 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~~~al~~~~  115 (425)
T 3ecd_A           40 SENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEF-ADEVEALAIERVKRLFNA--GH-ANVQPHSGAQANGAVMLALA  115 (425)
T ss_dssp             TCCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHHHHHHHHHC
T ss_pred             ccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChH-HHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHHHHHHHHcc
Confidence            4455699999999888854110 0 00 11222211 11233333 444444342  22 23458888899999999999


Q ss_pred             cCCCCCCCeEEEcCCCChh---HHHHHHhcCC--EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPL---YSASLAEFNM--EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                      ++||    .|+++.|+|.+   +.......|.  +++.++.+++ ++.+|++.|++.+++.    ++++|++++|+||+ 
T Consensus       116 ~~gd----~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~-  185 (425)
T 3ecd_A          116 KPGD----TVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD-TMLIDYDQVEALAQQH----KPSLIIAGFSAYPR-  185 (425)
T ss_dssp             CTTC----EEEEECC------------------CEEEEECCCTT-TSSCCHHHHHHHHHHH----CCSEEEEECSCCCS-
T ss_pred             CCCC----EEEEcccccccceecchhhhhcccceeeeecCCCcc-cCccCHHHHHHHHhhc----CCcEEEEccccCCC-
Confidence            9988    99999999987   2222223444  5566665543 5789999999999854    79999999999974 


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                       .   .++++|.++|++||++||+||+|....+..+.....+.           .. .+++.|+||.+   +|.|+||++
T Consensus       186 -~---~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-----------~~-di~~~s~sK~l---~g~~~g~~~  246 (425)
T 3ecd_A          186 -K---LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-----------HA-HVVTSTTHKTL---RGPRGGFVL  246 (425)
T ss_dssp             -C---CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-----------TC-SEEEEESSGGG---CCCSCEEEE
T ss_pred             -c---CCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-----------cC-cEEEecCCccc---CCCCcEEEE
Confidence             3   34899999999999999999996433222121111111           01 25577999987   467899997


Q ss_pred             eecCCHHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        253 VINLDPGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      .  .++.+.+.+.......  .+++..                                  ...++..++.         
T Consensus       247 ~--~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~a~~---------  281 (425)
T 3ecd_A          247 T--NDEEIAKKINSAVFPGLQGGPLMH----------------------------------VIAGKAVAFG---------  281 (425)
T ss_dssp             E--SCHHHHHHHHHHHC-----CCCHH----------------------------------HHHHHHHHHH---------
T ss_pred             e--CCHHHHHHHHhhhCccccCCccHH----------------------------------HHHHHHHHHH---------
Confidence            3  4478888777654422  122222                                  1111111110         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC-CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV-QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      ....++++.+++.++++++++.+.|.+. |+.+..+ .++.++|+.+.-+          +  .+...+...|+++||.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~l~~~gi~v  348 (425)
T 3ecd_A          282 EALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPK----------G--LKGAQVEQALERAGITC  348 (425)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG----------T--CCHHHHHHHHHHTTEEC
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCC----------C--CCHHHHHHHHHHcCCEe
Confidence            1111346778888899999999999886 8887753 4666777666410          1  12333567788899999


Q ss_pred             ecCC
Q psy13922        410 VPGA  413 (509)
Q Consensus       410 ~pg~  413 (509)
                      .++.
T Consensus       349 ~~~~  352 (425)
T 3ecd_A          349 NKNG  352 (425)
T ss_dssp             EECC
T ss_pred             cccc
Confidence            9654

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.93  E-value=3.9e-25  Score=232.82  Aligned_cols=178  Identities=15%  Similarity=0.188  Sum_probs=140.4

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHh
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAE  123 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~  123 (509)
                      .|+ ..|.+ +++++++++.+.+|.    +++++++|+++++..++. +.++||    .|+++.|.|.++...    ++.
T Consensus       126 ~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~~l~-~~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~  194 (464)
T 1ibj_A          126 DYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSAVTH-LIKNGE----EIVAGDDVYGGSDRLLSQVVPR  194 (464)
T ss_dssp             SBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHT-TSCTTC----EEEEESSCCHHHHHHHHHTSGG
T ss_pred             ccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHH-HhCCCC----EEEEECCCchhHHHHHHHHHHH
Confidence            376 34545 788888888777773    477888888899998886 778888    999999999998764    456


Q ss_pred             cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       124 ~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      .|++++.++.+       |++.|++.++.     ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|...
T Consensus       195 ~G~~v~~v~~~-------d~~~l~~~i~~-----~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g  259 (464)
T 1ibj_A          195 SGVVVKRVNTT-------KLDEVAAAIGP-----QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSP  259 (464)
T ss_dssp             GTCEEEEECTT-------SHHHHHHHCCS-----SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred             cCCEEEEeCCC-------CHHHHHHHhcc-----CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccc
Confidence            79999998753       78999998876     7999999999999999996   899999999999999999999763


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ..     +.++.     .+      ..++++|+||.++|.+|+|+||+++  .++++++.+.....
T Consensus       260 ~~-----~~~~~-----~~------~div~~S~sK~~~g~~Gl~~G~l~~--~~~~l~~~l~~~~~  307 (464)
T 1ibj_A          260 VL-----SRPLE-----LG------ADIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQN  307 (464)
T ss_dssp             TT-----CCGGG-----TT------CSEEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHH
T ss_pred             cc-----CChhh-----cC------CEEEEECCcccccCCCCCcEEEEEE--ChHHHHHHHHHHHH
Confidence            21     11111     11      2677889999985555999999983  44688888877654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.93  E-value=8.4e-25  Score=225.61  Aligned_cols=339  Identities=12%  Similarity=0.070  Sum_probs=216.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccC-C-Cccc-CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRG-Q-SVGS-YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~-~-~~~~-Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+.+|+.+++++.+.+.+... + .... |+......++++++.+.+.+.+|.  +++.|++++| ++++..+++++.+
T Consensus        31 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a~~~a~~~~~~  107 (405)
T 2vi8_A           31 SENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQANMAVYFTVLE  107 (405)
T ss_dssp             TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHHHHHHHHHCC
T ss_pred             CcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHHHHHHHHHhcC
Confidence            4455699999999888863110 0 0111 322233345554333444444453  3334445666 9999999999988


Q ss_pred             CCCCCCCeEEEcCCCChhHHH-H--HHhcC--CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSA-S--LAEFN--MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~-~--~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      +||    .|+++.|+|..+.. .  +...|  .+++.++.++. ++.+|++.|++.+++.    ++++|++ +|+|. |.
T Consensus       108 ~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~----~~~~v~~-~~~~~-~~  176 (405)
T 2vi8_A          108 HGD----TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH----RPKLIVA-AAAAY-PR  176 (405)
T ss_dssp             TTC----EEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH----CCSEEEE-CCSSC-CS
T ss_pred             CCC----EEEEecccccchhcccchhhhccceeEEEecccccc-cCCcCHHHHHHHHHhc----CCeEEEE-eCCCC-Cc
Confidence            888    99999999987743 1  12233  47888877533 4689999999999864    6888877 44554 34


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ..+   +++|.++|+++|+++|+||+|.......+....+   + .       .. .++++|+||.++|++|   ||++ 
T Consensus       177 ~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~-~-------~~-di~~~s~sK~~~g~~g---G~~~-  237 (405)
T 2vi8_A          177 IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---V-P-------YA-HFVTTTTHKTLRGPRG---GMIL-  237 (405)
T ss_dssp             CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---T-T-------TC-SEEEEESSSTTCCCSC---EEEE-
T ss_pred             cCC---HHHHHHHHHHcCCEEEEEccccccccccCcCCCc---c-c-------cC-CEEEEeccccCCCCCC---eEEE-
Confidence            433   8999999999999999999998533321111111   0 0       12 2667899999932455   9998 


Q ss_pred             ecCCHHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        254 INLDPGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                        .++++++.+......+  .+++..                                  ..+++..+++          
T Consensus       238 --~~~~~~~~l~~~~~~~~~~~~~~~----------------------------------~~aa~~~al~----------  271 (405)
T 2vi8_A          238 --CQEQFAKQIDKAIFPGIQGGPLMH----------------------------------VIAAKAVAFG----------  271 (405)
T ss_dssp             --ECHHHHHHHHHHHTTTTCSSCCHH----------------------------------HHHHHHHHHH----------
T ss_pred             --EcHHHHHHHHhhhcccccCCCCHH----------------------------------HHHHHHHHHH----------
Confidence              5789998887664322  122222                                  2222222211          


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC-CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        332 QF-SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV-QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       332 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      .. ..+++++++.++++++++.+.|+++ |+++..+ .+++++|++++.+          +. +... +...|.++||.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~~-~~~~-~~~~l~~~gi~v  338 (405)
T 2vi8_A          272 EALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQ----------QL-TGKT-AEKVLDEVGITV  338 (405)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG----------TC-CHHH-HHHHHHHHTEEC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCC----------CC-CHHH-HHHHHHHcCcee
Confidence            11 1347888899999999999999998 8888765 4577888776410          11 2333 456668899999


Q ss_pred             ecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeec----
Q psy13922        410 VPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILP----  485 (509)
Q Consensus       410 ~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~----  485 (509)
                      .||..+....+                            .                .+.+        ++|+++..    
T Consensus       339 ~~g~~~~~~~~----------------------------~----------------~~~~--------~iRis~~~~~~~  366 (405)
T 2vi8_A          339 NKNTIPYDPES----------------------------P----------------FVTS--------GIRIGTAAVTTR  366 (405)
T ss_dssp             EEECCTTCSSC----------------------------T----------------TTCS--------EEEEECHHHHHT
T ss_pred             ccCcCccccCC----------------------------C----------------CCCC--------ceEEeeeeeeec
Confidence            99874211000                            0                1112        79999883    


Q ss_pred             --ChHHHHHHHHHHHHHHHHH
Q psy13922        486 --QPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       486 --~~~~i~~~~~~l~~~~~~~  504 (509)
                        +++++++++++|++++++.
T Consensus       367 ~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          367 GFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHHHHHHHHHhcc
Confidence              7999999999999887543

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.93  E-value=1e-24  Score=228.10  Aligned_cols=321  Identities=10%  Similarity=0.084  Sum_probs=196.6

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--------
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--------   97 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------   97 (509)
                      -|+.+++++.+++....... ..| +.....++++.+++++    |    .++|++|+|+++|+..+++.+.        
T Consensus        82 ~~p~v~~ai~~~~~~~~~~~-~~~-~~~~~~~l~~~la~~~----g----~~~v~~~~sGseA~~~al~~a~~~~~~~~g  151 (433)
T 1z7d_A           82 CHPNILNAMINQAKNLTICS-RAF-FSVPLGICERYLTNLL----G----YDKVLMMNTGAEANETAYKLCRKWGYEVKK  151 (433)
T ss_dssp             TCHHHHHHHHHHHTTCSCCC-TTS-EEHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHhCCCcc-CCc-CCHHHHHHHHHHHhhc----C----CCeEEEeCCHHHHHHHHHHHHHHHhhhccC
Confidence            46899999999998732111 113 2223345566666554    3    5799999999999999999865        


Q ss_pred             -cCCCCCCCeEEEcCCCChhHHHH-HHhcC------------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE
Q psy13922         98 -EDVDGKKPGVLIPIPQYPLYSAS-LAEFN------------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus        98 -~~gd~~~~~Vlv~~p~y~~~~~~-~~~~g------------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                       .+|   ++.|+++.|+|+++... +...|            ..+..+|.       .|++.|++.++..    ++++|+
T Consensus       152 ~~~g---r~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~~----~~~~vi  217 (433)
T 1z7d_A          152 IPEN---MAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELKDP----NVCAFI  217 (433)
T ss_dssp             CCTT---CCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHTST----TEEEEE
T ss_pred             CCCC---CCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCCC----CEEEEE
Confidence             234   23999999999987543 33223            23333332       2899999999521    678877


Q ss_pred             EeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      ++..+|++|. .++++++++|.++|++||+++|+||+|.+|...+.  ...+...  +..     .+++   |+||.+ |
T Consensus       218 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~--~~~~~~~--~~~-----~di~---t~sK~l-~  284 (433)
T 1z7d_A          218 VEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVHHY--NVK-----PDVI---LLGKAL-S  284 (433)
T ss_dssp             ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGGG--TCC-----CSEE---EECGGG-G
T ss_pred             EECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc--chhhHhc--CCC-----CCEE---EECccc-c
Confidence            7666778997 47889999999999999999999999998765432  2111111  111     1233   889999 6


Q ss_pred             CCC-CeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhccc
Q psy13922        243 ECG-LRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV  320 (509)
Q Consensus       243 ~~G-lr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~  320 (509)
                       +| +|+||++   .++++++.+..... ...+.+.+++++                              +.+++..+.
T Consensus       285 -~G~~~~G~v~---~~~~~~~~l~~~~~~~t~~~~~~~~aa------------------------------a~aal~~~~  330 (433)
T 1z7d_A          285 -GGHYPISAVL---ANDDIMLVIKPGEHGSTYGGNPLAASI------------------------------CVEALNVLI  330 (433)
T ss_dssp             -TTSSCCEEEE---ECHHHHTTCCTTCCCCTTTTCHHHHHH------------------------------HHHHHHHHH
T ss_pred             -CCCCCeEEEE---ECHHHHhhhccccccccCCCCHHHHHH------------------------------HHHHHHHHH
Confidence             89 9999998   68888877654221 223444442111                              222222211


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHH
Q psy13922        321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI----EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL  396 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  396 (509)
                                      .+.+.+.++++.+++.+.|+++    |.+...++. |.++|+++.-.          + .+...
T Consensus       331 ----------------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-g~~~~i~~~~~----------~-~~~~~  382 (433)
T 1z7d_A          331 ----------------NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGK-GLLCAIEFKNE----------L-VNVLD  382 (433)
T ss_dssp             ----------------HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEE-TTEEEEEECTT----------T-CCHHH
T ss_pred             ----------------hccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEee-eeEEEEEEccC----------h-hHHHH
Confidence                            0134455566666666666543    322223343 45566666411          0 12344


Q ss_pred             HHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCc
Q psy13922        397 YAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGT  476 (509)
Q Consensus       397 ~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +... |.++||.+.|+.                                                    .+         
T Consensus       383 ~~~~-l~~~Gv~v~~~~----------------------------------------------------~~---------  400 (433)
T 1z7d_A          383 ICLK-LKENGLITRDVH----------------------------------------------------DK---------  400 (433)
T ss_dssp             HHHH-HHHTTEECCEET----------------------------------------------------TT---------
T ss_pred             HHHH-HHHCCeEEecCC----------------------------------------------------CC---------
Confidence            4444 446799998741                                                    12         


Q ss_pred             eeEEEEee--cChHHHHHHHHHHHHHHHHHHhhc
Q psy13922        477 YHFRTTIL--PQPEKLKAMLEKFREFHEEFLAKY  508 (509)
Q Consensus       477 ~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~~~~  508 (509)
                       ++|+++.  .+++++++++++|+++++++.+||
T Consensus       401 -~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~  433 (433)
T 1z7d_A          401 -TIRLTPPLCITKEQLDECTEIIVKTVKFFDERF  433 (433)
T ss_dssp             -EEEECCCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred             -EEEEECCcCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence             8999765  799999999999999998887765

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.93  E-value=3.9e-25  Score=232.38  Aligned_cols=224  Identities=14%  Similarity=0.079  Sum_probs=146.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~~  105 (509)
                      |+.+++++.+++.+.     .+|....+..+.+.++++.+.+.++.. ..++|++|+|+++|+..+++.++. ++   ++
T Consensus        79 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~Alk~a~~~~g---~~  149 (451)
T 3oks_A           79 APKVVEAVRSQVGDF-----THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVENAVKIARSHTH---KP  149 (451)
T ss_dssp             CHHHHHHHHHHHTTC-----SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHHHHHHHHHHHHC---CC
T ss_pred             CHHHHHHHHHHHHhc-----ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHHHHHHHHHHhcC---CC
Confidence            789999999999872     224444455667777777776665421 357899999999999999988765 33   23


Q ss_pred             eEEEcCCCChhHHHHHHhcCC--------------EEEEEecCCCCCC---CC--------CHHHHHHHHHhhhccCCce
Q psy13922        106 GVLIPIPQYPLYSASLAEFNM--------------EQIGYYLDESKQW---GL--------PISELERSITEARKHCNPR  160 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~~~~---~~--------d~~~L~~~i~~~~~~~~~~  160 (509)
                      .|++..++|+++...+...+.              .+..++.......   +.        +++.+++.+++.... +..
T Consensus       150 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~-~~~  228 (451)
T 3oks_A          150 AVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGA-DNL  228 (451)
T ss_dssp             EEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCG-GGE
T ss_pred             eEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCC-CCE
Confidence            899999999987766554422              3444444310000   11        245555555532111 234


Q ss_pred             EEEEeCCCCCCC-C-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        161 AIVIINPGNPTG-Q-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       161 ~ivi~~p~NPtG-~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      +++++.|.|++| . ..+++++++|.++|++||+++|+||+|.+|.+.+.  ..+....  ++.+     ++   .||||
T Consensus       229 aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~~--~~~p-----di---~t~sK  296 (451)
T 3oks_A          229 AAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA--MFACEHE--GIDP-----DL---IVTAK  296 (451)
T ss_dssp             EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGGG--TCCC-----SE---EEECG
T ss_pred             EEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc--chhhhhc--CCCC-----Ce---eeehh
Confidence            455555655555 3 55778899999999999999999999998876542  2222111  1111     13   38899


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVL  277 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~  277 (509)
                      .+ | +|+|+||++   +++++++.+..... .+++.+.+
T Consensus       297 ~l-~-~G~~iG~v~---~~~~~~~~~~~~~~~~t~~~~~~  331 (451)
T 3oks_A          297 GI-A-GGLPLSAVT---GRAEIMDSPHVSGLGGTYGGNPI  331 (451)
T ss_dssp             GG-G-TTSSCEEEE---EEHHHHTCSCTTSBCCSSSSCHH
T ss_pred             hh-h-CCcceEEEE---ECHHHHhhhcCCCcCCCCCCCHH
Confidence            99 5 599999998   78999888765433 34455665

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.93  E-value=1e-24  Score=225.91  Aligned_cols=335  Identities=12%  Similarity=0.085  Sum_probs=209.7

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcc--cCC--CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVG--SYT--DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--   97 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~--~Y~--~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--   97 (509)
                      +..|+.+++++.+.+.........  .|+  ......++++.+++++    |  .++++|++|+|+++++..+++.+.  
T Consensus        38 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~al~~al~~~~~~  111 (416)
T 1qz9_A           38 GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----G--ARDGEVVVTDTTSINLFKVLSAALRV  111 (416)
T ss_dssp             CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----T--CCTTSEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----C--CCcccEEEeCChhHHHHHHHHhhccc
Confidence            345788999999998762111111  121  1234456666666665    4  457899999999999998888876  


Q ss_pred             ----cCCCCCCCe-EEEcCCCChhHHHHH----Hhc--CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922         98 ----EDVDGKKPG-VLIPIPQYPLYSASL----AEF--NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus        98 ----~~gd~~~~~-Vlv~~p~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                          ++||    . |+++.++|..+...+    +..  |++++.++.         ++.|++.+++     ++++|++++
T Consensus       112 ~~~~~~gd----~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~-----~~~~v~~~~  173 (416)
T 1qz9_A          112 QATRSPER----RVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQ-----DTAVVMLTH  173 (416)
T ss_dssp             HHHHSTTC----CEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCST-----TEEEEEEES
T ss_pred             ccccCCCC----cEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCC-----CceEEEEec
Confidence                7776    6 455556777655433    233  999988875         6788888865     799999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC
Q psy13922        167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL  246 (509)
Q Consensus       167 p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl  246 (509)
                      |+||||.+++   +++|.++|+++|+++|+|++|....     ...++...    +.      .+++.|+||.+.  +|.
T Consensus       174 ~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~-----~~~~~~~~----~~------d~~~~s~~K~l~--~g~  233 (416)
T 1qz9_A          174 VNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGA-----VPVDLHQA----GA------DYAIGCTYKYLN--GGP  233 (416)
T ss_dssp             BCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT-----SCCCHHHH----TC------SEEEECSSSTTC--CCT
T ss_pred             cccCcccccC---HHHHHHHHHHcCCEEEEEccccccC-----cCCChhhc----CC------CEEEecCcccCC--CCC
Confidence            9999999988   8999999999999999999997421     12233222    11      355669999983  677


Q ss_pred             ee-EEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCC
Q psy13922        247 RG-GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQP  325 (509)
Q Consensus       247 r~-G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  325 (509)
                      ++ |+++   .++++++.+......+.+....  .   ..  +..+.   .......+..++....++.++..+++    
T Consensus       234 ~~~g~l~---~~~~~~~~l~~~~~g~~g~~~~--~---~~--~~~~~---~~~~~~~~~~~~~~~~~~~a~~~al~----  296 (416)
T 1qz9_A          234 GSQAFVW---VSPQLCDLVPQPLSGWFGHSRQ--F---AM--EPRYE---PSNGIARYLCGTQPITSLAMVECGLD----  296 (416)
T ss_dssp             TCCCEEE---ECTTTTTTSCCSCCCGGGBCTT--S---CC--CSSCC---BCSSGGGGCCSCCCHHHHHHHHHHHH----
T ss_pred             CCeEEEE---ECHHHHhccCCCccccCccccc--c---CC--CCccC---CCcchHHhcCCCCCHHHHHHHHHHHH----
Confidence            87 9998   5777766554321111000000  0   00  00000   00000001111111112222222221    


Q ss_pred             CCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-C--CCeeccCC----ceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        326 GEPSYEQFS-REKQSVLDSLKQRAKMVADTFNSI-E--GMSCNPVQ----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       326 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                            ... .+++++++.++++++++.+.|+++ |  |+.+..+.    .+.++|+++.               +...+
T Consensus       297 ------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~l  355 (416)
T 1qz9_A          297 ------VFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP---------------EGYAV  355 (416)
T ss_dssp             ------HHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------------THHHH
T ss_pred             ------HHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC---------------CHHHH
Confidence                  111 126778888999999999999885 6  78877653    2445676654               12333


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                       .+.|.++||.+..                                                      .+.+        
T Consensus       356 -~~~l~~~gi~~~~------------------------------------------------------~~~~--------  372 (416)
T 1qz9_A          356 -IQALIDRGVIGDY------------------------------------------------------REPR--------  372 (416)
T ss_dssp             -HHHHHTTTEECEE------------------------------------------------------ETTT--------
T ss_pred             -HHHHHhCCcEecc------------------------------------------------------CCCC--------
Confidence             4555577998642                                                      1112        


Q ss_pred             eEEEEee---cChHHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTIL---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       478 ~~Rls~~---~~~~~i~~~~~~l~~~~~~  503 (509)
                      ++|+++.   ++++++++++++|++++++
T Consensus       373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          373 IMRFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            8999986   5999999999999999875

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.93  E-value=6.4e-25  Score=232.31  Aligned_cols=340  Identities=13%  Similarity=0.105  Sum_probs=219.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      ||.|++++.+++.+.   .+  |....+..+.++++++++.+.++  ...++|++++|+++|+..+++.++..    |+.
T Consensus        72 ~p~v~~A~~~~l~~~---~~--~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~  144 (476)
T 3i5t_A           72 RREIVDAMAHQAMVL---PY--ASPWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP  144 (476)
T ss_dssp             CHHHHHHHHHHHHHC---CC--CCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc---cC--cccCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            799999999999872   21  11113456788888888887765  34569999999999999999998652    222


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC---------------EEEEEecCCCCCCCCC--------HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM---------------EQIGYYLDESKQWGLP--------ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~---------------~~~~v~~~~~~~~~~d--------~~~L~~~i~~~~~~~~~  159 (509)
                      +++.|++..|+|+++...+...+.               ..+.+|..... +..|        ++.|++.++.... .++
T Consensus       145 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~-~~~  222 (476)
T 3i5t_A          145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGP-DTI  222 (476)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCG-GGE
T ss_pred             CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCC-CCE
Confidence            345899999999998766554432               12222221111 1222        7889888874211 157


Q ss_pred             eEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      ++|+++.++|++|. +++++++++|.++|++||+++|+||+|.+|...+.  ..+.... .++.+     +++   ++||
T Consensus       223 aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~--~~~~~~~-~~v~p-----di~---t~sK  291 (476)
T 3i5t_A          223 AAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE--WFASEKV-FGVVP-----DII---TFAK  291 (476)
T ss_dssp             EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHHT-TCCCC-----SEE---EECG
T ss_pred             EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC--ceeeecc-cCCCc-----chh---hhhh
Confidence            88888888888886 88999999999999999999999999999876642  2232211 11111     233   6799


Q ss_pred             ccCCCCC-CeeEEEeeecCCHHHHHHHHHhh--------hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        239 GYMGECG-LRGGYSEVINLDPGVKAMLHKSI--------SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       239 ~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      .+ | .| +|+|+++   +++++++.+....        ..+++.+.+++++                            
T Consensus       292 ~l-~-~G~~plg~v~---~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aA----------------------------  338 (476)
T 3i5t_A          292 GV-T-SGYVPLGGLA---ISEAVLARISGENAKGSWFTNGYTYSNQPVACAA----------------------------  338 (476)
T ss_dssp             GG-G-TTSSCCEEEE---ECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHH----------------------------
T ss_pred             hh-c-CCCcCeEEEE---ECHHHHHHHhcCCcccccccccCCCCcCHHHHHH----------------------------
Confidence            99 5 69 9999998   7999999887531        1334455552222                            


Q ss_pred             ccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCeeccCCceeEEeecCCCCHHHHHHH
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQGAMYAFPQMKLPAKAIAKA  386 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~  386 (509)
                        +.+++..+.                -+.+.+.++++.+++.+.|+.+   |.+..+.+.|.++ ++++.......   
T Consensus       339 --a~aaL~~~~----------------~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~-~i~~~~~~~~~---  396 (476)
T 3i5t_A          339 --ALANIELME----------------REGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVG-CVQCLLDPTRA---  396 (476)
T ss_dssp             --HHHHHHHHH----------------HTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE-EEEECCC-------
T ss_pred             --HHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCcee-EEEEecCcccc---
Confidence              223322211                1334555666666666666653   4444555666554 44443211000   


Q ss_pred             hhcCCC----CcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccc
Q psy13922        387 KAEGKC----PSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGI  462 (509)
Q Consensus       387 ~~~g~~----~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (509)
                        ....    ....+ ...|.++||.++|.                                                  
T Consensus       397 --~~~~~~~~~~~~~-~~~l~~~Gv~v~~~--------------------------------------------------  423 (476)
T 3i5t_A          397 --DGTAEDKAFTLKI-DERCFELGLIVRPL--------------------------------------------------  423 (476)
T ss_dssp             ---CCHHHHHHHHHH-HHHHHHTTEECEEE--------------------------------------------------
T ss_pred             --ccccchhHHHHHH-HHHHHHCCCEEEec--------------------------------------------------
Confidence              0000    02233 34455679999862                                                  


Q ss_pred             cccCCCCCCCCCCceeEEEE--eecChHHHHHHHHHHHHHHHHHHhh
Q psy13922        463 CIVPGAGFGQVPGTYHFRTT--ILPQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       463 ~~~~~~~~~~~~~~~~~Rls--~~~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                          | +        ++||+  ++.++++|++++++|+++++++.++
T Consensus       424 ----g-~--------~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~  457 (476)
T 3i5t_A          424 ----G-D--------LCVISPPLIISRAQIDEMVAIMRQAITEVSAA  457 (476)
T ss_dssp             ----T-T--------EEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----C-C--------EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                1 2        89999  6799999999999999999887665

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=1e-24  Score=224.38  Aligned_cols=299  Identities=16%  Similarity=0.133  Sum_probs=203.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhcccCCCcccCC-CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hc
Q psy13922         21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYT-DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IE   98 (509)
Q Consensus        21 ~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~-~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~   98 (509)
                      ++.|.+|+.+++++.+.+..   +.   |+ +..+..++|++++++++        .+++++++|+++++..++..+ .+
T Consensus        29 ~~~p~~~~~~~~a~~~~~~~---~~---~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~al~~~l~~~~~~   94 (391)
T 3dr4_A           29 VAAPRLDGNERDYVLECMDT---TW---ISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTALHLALVAMGIG   94 (391)
T ss_dssp             CCCCCCCSSHHHHHHHHHHH---TC---CSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCHHHHHHHHHHHHc---CC---ccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCC
Confidence            37888999999999998877   22   55 67888999999999993        237899999999999999999 88


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|.++...++..|++++.++.+++ ++.+|++.|++.+++     ++++|+   |+||||...+  
T Consensus        95 ~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~-----~~~~v~---~~n~tG~~~~--  159 (391)
T 3dr4_A           95 PGD----EVIVPSLTYIASANSVTYCGATPVLVDNDPR-TFNLDAAKLEALITP-----RTKAIM---PVHLYGQICD--  159 (391)
T ss_dssp             TTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGSGGGCCT-----TEEEEC---CBCGGGCCCC--
T ss_pred             CcC----EEEECCCchHHHHHHHHHCCCEEEEEecCcc-ccCcCHHHHHHhcCC-----CceEEE---EECCCCChhh--
Confidence            888    9999999999999999999999999998754 478899999998876     788877   5789999866  


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecC
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~  256 (509)
                       +++|.++|+++|+++|+|++|.......+.....+             . -+.+.|||  |.+   +|.++|+++.  .
T Consensus       160 -~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-------------~-di~~~S~s~~K~l---~~g~gg~~~~--~  219 (391)
T 3dr4_A          160 -MDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-------------G-DCATFSFFGNAII---TTGEGGMITT--N  219 (391)
T ss_dssp             -HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-------------S-SEEEEECBTTSSS---CCBSCEEEEE--S
T ss_pred             -HHHHHHHHHHcCCEEEEECcccccceECCeeeccc-------------C-CEEEEECCCCCcC---CcCCeEEEEE--C
Confidence             88899999999999999999986443211111000             0 14455766  776   3457888864  6


Q ss_pred             CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++.+.+.+.............   .   ......++                  .....+..++.         ....+.
T Consensus       220 ~~~~~~~~~~~~~~g~~~~~~---~---~~~~~g~~------------------~~~~~l~aa~~---------~~~~~~  266 (391)
T 3dr4_A          220 DDDLAAKMRLLRGQGMDPNRR---Y---WFPIVGFN------------------YRMTNIQAAIG---------LAQLER  266 (391)
T ss_dssp             CHHHHHHHHHHHBTTCCTTST---T---CCSSCCCB------------------CBCCHHHHHHH---------HHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCCCCc---c---cccccccc------------------cCCCHHHHHHH---------HHHHHH
Confidence            778888887665421110000   0   00000000                  01111111110         111223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccC------Ccee-EEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPV------QGAM-YAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      +++..+..+++.+.+.+.|.++ ++.+..+      ..++ .+++.+.-.         .+. +... +...|.++||.+
T Consensus       267 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~-~~~~-l~~~L~~~GI~v  334 (391)
T 3dr4_A          267 VDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEG---------LST-TRDQ-VIKDLDALGIES  334 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSS---------CSS-CHHH-HHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCc---------cch-hHHH-HHHHHHHCCCce
Confidence            5667778888888999999988 8776544      1222 234333310         011 2333 455666779999


Q ss_pred             ecCC
Q psy13922        410 VPGA  413 (509)
Q Consensus       410 ~pg~  413 (509)
                      ++|.
T Consensus       335 ~~~~  338 (391)
T 3dr4_A          335 RPVF  338 (391)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            9875

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.93  E-value=9.1e-25  Score=231.08  Aligned_cols=347  Identities=14%  Similarity=0.122  Sum_probs=222.6

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCC---CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh----h
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTD---SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL----I   97 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----~   97 (509)
                      ...+.+.+++.+.+.     .++.|.+   ..|..++++++++++.+.+|.+.   .+++|+|+++++..++.++    .
T Consensus        77 ~~~p~v~~~~~~~~~-----~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~  148 (474)
T 1wyu_B           77 KYNPKLHEEAARLFA-----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHE  148 (474)
T ss_dssp             CCCCHHHHHHHHTTS-----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-----hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHH
Confidence            344566666655422     2344554   67888999999999988888542   4778899999998866555    3


Q ss_pred             cCCC-CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         98 EDVD-GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        98 ~~gd-~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ++|| .+++.|+++.|+|..+...++..|++++.++.+++  +.+|++.|++.+++     ++++|++++| ||+|.+. 
T Consensus       149 ~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~--~~~d~~~L~~~i~~-----~t~~v~~~~p-n~~G~~~-  219 (474)
T 1wyu_B          149 DRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPE--GEVDLEALKRELGP-----HVAALMLTNP-NTLGLFE-  219 (474)
T ss_dssp             HTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTT--SSBCHHHHHHHCST-----TEEEEEECSS-CTTSCCC-
T ss_pred             hcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCC--CCcCHHHHHHhhCC-----CceEEEEECC-CCCcccC-
Confidence            4665 45669999999999999999999999999998753  68899999999976     7999999998 6899873 


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC-C---CeeEEEe
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC-G---LRGGYSE  252 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~-G---lr~G~v~  252 (509)
                       +++++|+++|+++|+++|+|++|..+.++    ..+...+    +.      .+++.|+||.+ |.| |   .|+||++
T Consensus       220 -~~l~~i~~l~~~~g~~li~Dea~~~~~~g----~~~~~~~----g~------di~~~s~~K~~-~~p~g~gG~~~G~~~  283 (474)
T 1wyu_B          220 -RRILEISRLCKEAGVQLYYDGANLNAIMG----WARPGDM----GF------DVVHLNLHKTF-TVPHGGGGPGSGPVG  283 (474)
T ss_dssp             -TTHHHHHHHHHHHTCEEEEEGGGGGGTTT----TCCHHHH----TC------SEEECCTTTTT-CCCCTTSCCCCCCEE
T ss_pred             -CCHHHHHHHHHHcCCEEEEeCchhhhhcc----CCCcccC----CC------cEEEEeCcccc-ccCCCCCCCCeEEEE
Confidence             45999999999999999999999876542    1122222    11      34456999999 556 4   5999998


Q ss_pred             eecCCHHHHHHHHH-hhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        253 VINLDPGVKAMLHK-SISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       253 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                         .++++++.+.. ... ..+..........+-..  ++.            .+..+..++.+....+.         .
T Consensus       284 ---~~~~l~~~l~~~~~~-~~g~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~aa~~~l~---------~  336 (474)
T 1wyu_B          284 ---VKAHLAPYLPVPLVE-RGEEGFYLDFDRPKSIG--RVR------------SFYGNFLALVRAWAYIR---------T  336 (474)
T ss_dssp             ---ECGGGGGGCCSCEEE-ECSSCEEEECCCTTCCC--CSS------------STTSCHHHHHHHHHHHH---------H
T ss_pred             ---EcHHHHHhCCCCeee-ccCCeeEecccCcccCc--ccc------------cCcCcHHHHHHHHHHHH---------H
Confidence               56676655431 100 00000000000000000  000            00000001221111111         0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeE-EeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMY-AFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      ...++++++.+.+.++++++.+.|+++ |+++..+...+. .|+++.  .         +. +..++..+++ ++||.+ 
T Consensus       337 ~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~---------~~-~~~~l~~~L~-~~Gi~~-  401 (474)
T 1wyu_B          337 LGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPP--E---------GF-RALDLAKGLL-ELGFHP-  401 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCS--T---------TC-CHHHHHHHHH-HTTCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcC--C---------CC-CHHHHHHHHH-HCCccc-
Confidence            112346777889999999999999988 887643332221 454442  1         22 3445455555 559974 


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeec--ChH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILP--QPE  488 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~--~~~  488 (509)
                      |+..|..                                                ...+        ++|++++.  +++
T Consensus       402 ~~~~~~~------------------------------------------------~~~~--------~lRis~~~~~t~e  425 (474)
T 1wyu_B          402 PTVYFPL------------------------------------------------IVKE--------ALMVEPTETEAKE  425 (474)
T ss_dssp             CEESCST------------------------------------------------TSTT--------CEEECCCTTSCHH
T ss_pred             ccccccc------------------------------------------------ccCC--------EEEEEeecCCCHH
Confidence            5544432                                                1112        89999994  899


Q ss_pred             HHHHHHHHHHHHHH
Q psy13922        489 KLKAMLEKFREFHE  502 (509)
Q Consensus       489 ~i~~~~~~l~~~~~  502 (509)
                      ++++++++|+++++
T Consensus       426 ~id~~~~~L~~~~~  439 (474)
T 1wyu_B          426 TLEAFAEAMGALLK  439 (474)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998874

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.93  E-value=1.5e-24  Score=229.83  Aligned_cols=335  Identities=13%  Similarity=0.084  Sum_probs=225.9

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCC--CcEEEeCCHHHHHHHHHHHh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADW--QDVILSAGASDGIKSVLKLL   96 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l   96 (509)
                      +.+..|+.|++++.+.+...-...   ...|+...+..++++.+.+++.+.+|.+.+.  .+|++++|+ +++..++.++
T Consensus        52 ~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~al  130 (483)
T 1rv3_A           52 SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTAL  130 (483)
T ss_dssp             TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHh
Confidence            566679999999988887521000   0125555566788888888888888865322  358888888 8888889999


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHH--------HHhcC--CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSAS--------LAEFN--MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                      +++||    +|+++.|.|.++...        +...|  .++++++.+++ ++.+|++.|++.+++.    ++++|++ +
T Consensus       131 l~pGD----~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~-~~~iD~d~le~~i~~~----~tklIi~-~  200 (483)
T 1rv3_A          131 VEPHG----RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF----HPKLIIA-G  200 (483)
T ss_dssp             TCTTC----EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH----CCSEEEE-C
T ss_pred             cCCCC----EEEEecCccCcCcchhhhhcccCcccccceEEEEECccccC-CCcCCHHHHHHHHhhc----CCcEEEE-e
Confidence            99999    999999988876532        22334  56666655643 4789999999999843    8999999 8


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD-NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       167 p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      ++||+ .+++   +++|.++|+++|+++|+|++|.. +.+.+ ....++    +       .. .+++.|+||++   .|
T Consensus       201 ~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~-~~~~p~----~-------~~-div~~s~~K~l---~G  260 (483)
T 1rv3_A          201 TSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAG-VVPSPF----E-------HC-HVVTTTTHKTL---RG  260 (483)
T ss_dssp             CSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHT-SSCCGG----G-------TC-SEEEEESSGGG---CC
T ss_pred             CCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccC-CCCCCC----C-------CC-cEEEecCcccC---CC
Confidence            99998 7776   89999999999999999999863 33222 111111    1       11 24567999987   47


Q ss_pred             CeeEEEeeecCCH--------------HHHHHHHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCc
Q psy13922        246 LRGGYSEVINLDP--------------GVKAMLHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQ  309 (509)
Q Consensus       246 lr~G~v~~~~~~~--------------~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (509)
                      .|+||+++  .++              ++...+......  .++++..                                
T Consensus       261 prgG~i~~--~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~--------------------------------  306 (483)
T 1rv3_A          261 CRAGMIFY--RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNH--------------------------------  306 (483)
T ss_dssp             CSCEEEEE--ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHH--------------------------------
T ss_pred             CCceEEEE--cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHH--------------------------------
Confidence            78899984  332              233333322111  1122222                                


Q ss_pred             ccccchhhcccCCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCC-ceeEEeecCCCCHHHHHHHh
Q psy13922        310 SVGQTVMDCVVNPPQPGEPSYEQF-SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ-GAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       310 ~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~  387 (509)
                        ..+++..++.          .. ..+++++++.+.++++++.+.|.++ |+++..+. +++++|+++..         
T Consensus       307 --~iaal~~Al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~---------  364 (483)
T 1rv3_A          307 --AIAGVAVALK----------QAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRS---------  364 (483)
T ss_dssp             --HHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGG---------
T ss_pred             --HHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccC---------
Confidence              2223322221          11 1236778888999999999999998 88887653 45677877751         


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEe----cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhccccc
Q psy13922        388 AEGKCPSVLYAFELLERTGICIV----PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGIC  463 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (509)
                       .|+ +... +..+|++.||.+.    ||..+.                                               
T Consensus       365 -~g~-~~~~-~~~~L~~~gI~v~~~~~pg~~~~-----------------------------------------------  394 (483)
T 1rv3_A          365 -KGT-DGGR-AEKVLEACSIACNKNTCPGDKSA-----------------------------------------------  394 (483)
T ss_dssp             -GTC-CHHH-HHHHHHHTTEECEEECCSSCSCT-----------------------------------------------
T ss_pred             -CCC-CHHH-HHHHHHhCCcEEecCCCCCCCcC-----------------------------------------------
Confidence             132 2333 5677888999999    776321                                               


Q ss_pred             ccCCCCCCCCCCceeEEEEee--cC----hHHHHHHHHHHHHHHHH
Q psy13922        464 IVPGAGFGQVPGTYHFRTTIL--PQ----PEKLKAMLEKFREFHEE  503 (509)
Q Consensus       464 ~~~~~~~~~~~~~~~~Rls~~--~~----~~~i~~~~~~l~~~~~~  503 (509)
                        .+.+        ++||++.  ++    ++++++++++|.++++.
T Consensus       395 --~~~~--------~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          395 --LRPS--------GLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             --TSCC--------EEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --CCCc--------eEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence              1222        8999988  35    89999999999998875

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.93  E-value=9.2e-25  Score=226.27  Aligned_cols=300  Identities=15%  Similarity=0.101  Sum_probs=184.8

Q ss_pred             CCCCCCHHHHHHHHHHHhccc--CCC-cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCR--GQS-VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~--~~~-~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +.+..|+.+++++.+.+.+..  +.. ...|+.......+.+...+.+.+.+|  .++++|++++| ++++..+++++++
T Consensus        38 ~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~~  114 (420)
T 3gbx_A           38 SENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALLQ  114 (420)
T ss_dssp             TCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHCC
T ss_pred             cCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhcC
Confidence            344468999999988885411  000 01133333333444434355555545  35556767666 7899999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHH---HHHHh--cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYS---ASLAE--FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~---~~~~~--~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      +||    .|+++.|+|..+.   ..+..  .+...+.++.+  .++.+|++.|++.+++.    ++++|++++|+||+  
T Consensus       115 ~gd----~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~--  182 (420)
T 3gbx_A          115 PGD----TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH----KPKMIIGGFSAYSG--  182 (420)
T ss_dssp             TTC----EEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH----CCSEEEECCTTCCS--
T ss_pred             CCC----EEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc----CCeEEEEecCccCC--
Confidence            998    9999999998743   22222  34566666665  34579999999999874    69999998999974  


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      ..+   +++|.++|++||+++|+||+|.......+ .+.....          . ..+++.|+||.+ |  |.++||++ 
T Consensus       183 ~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~----------~-~di~~~s~sK~~-~--g~~gg~~~-  243 (420)
T 3gbx_A          183 VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNPVP----------H-AHVVTTTTHKTL-A--GPRGGLIL-  243 (420)
T ss_dssp             CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCSTT----------T-SSEEEEESSGGG-C--SCSCEEEE-
T ss_pred             ccC---HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcccc----------c-CCEEEeecccCC-C--CCCceEEE-
Confidence            444   89999999999999999999864433222 1111100          1 136678999998 3  56679997 


Q ss_pred             ecCCH---HHHHHHHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        254 INLDP---GVKAMLHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       254 ~~~~~---~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                        .++   ++.+.+......  ..+++..                                  .+.++...+.       
T Consensus       244 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~a~~-------  280 (420)
T 3gbx_A          244 --AKGGDEELYKKLNSAVFPSAQGGPLMH----------------------------------VIAGKAVALK-------  280 (420)
T ss_dssp             --ESSCCHHHHHHHHHHHC----CCCCHH----------------------------------HHHHHHHHHH-------
T ss_pred             --EcCCcHHHHHHhhhhcCCCCCCCcchh----------------------------------HHHHHHHHHH-------
Confidence              455   788777654432  1223232                                  1222221110       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC-CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV-QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                        ....++++++++.+.++++.+.+.|.+. |+.+..+ ..+.++|+.+..+          +  .+...+...|+++||
T Consensus       281 --~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~l~~~gi  345 (420)
T 3gbx_A          281 --EAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDK----------N--LTGKEADAALGRANI  345 (420)
T ss_dssp             --HTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG----------T--CCHHHHHHHHHHTTE
T ss_pred             --HHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCC----------C--CCHHHHHHHHHHCCc
Confidence              0012336778888999999999999886 8887653 4566677665411          1  133335677888999


Q ss_pred             EEecCC
Q psy13922        408 CIVPGA  413 (509)
Q Consensus       408 ~v~pg~  413 (509)
                      .+.|+.
T Consensus       346 ~v~~~~  351 (420)
T 3gbx_A          346 TVNKNS  351 (420)
T ss_dssp             ECEEEC
T ss_pred             Eecccc
Confidence            999844

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.93  E-value=3e-24  Score=226.86  Aligned_cols=214  Identities=14%  Similarity=0.109  Sum_probs=147.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~  102 (509)
                      ||.|++++.+++.+..   +. |....+..+.+.++++.+.+.++  ...++|++++|+++|+..+++.++..    |.+
T Consensus        73 ~p~v~~A~~~~~~~~~---~~-~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~  146 (472)
T 3hmu_A           73 RDELAEVAARQMRELP---YY-NTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQP  146 (472)
T ss_dssp             CHHHHHHHHHHHHHCS---CC-CSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhcc---cc-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            7999999999998832   11 33333445566666666665544  34679999999999999999998751    111


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC------------EEEEEecCC--C-CCCCCC--------HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM------------EQIGYYLDE--S-KQWGLP--------ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~--~-~~~~~d--------~~~L~~~i~~~~~~~~~  159 (509)
                      .++.||+..|+|+++...+...+.            .+..++...  . +.+ .|        ++.|++.+++... .++
T Consensus       147 ~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~-~~~  224 (472)
T 3hmu_A          147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGE-NRV  224 (472)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG-GGE
T ss_pred             CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC-CCE
Confidence            234899999999998766555433            233444221  0 111 34        7888888874211 156


Q ss_pred             eEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVIINPGNPTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      ++|+++.++|++|.+ .+++++++|.++|++||+++|+||+|.+|...+.  .......  ++.+     +++   +|||
T Consensus       225 aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~a~~~~--~v~p-----di~---t~sK  292 (472)
T 3hmu_A          225 AAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN--WFGTQTM--GIRP-----HIM---TIAK  292 (472)
T ss_dssp             EEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHHH--TCCC-----SEE---EECG
T ss_pred             EEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc--cchhHHh--CCCC-----cee---eech
Confidence            777777778888875 4889999999999999999999999999876642  2222221  2222     233   6799


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHH
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l  264 (509)
                      .+ |-.|+|+|+++   +++++++.+
T Consensus       293 ~l-~gg~~plG~v~---~~~~i~~~~  314 (472)
T 3hmu_A          293 GL-SSGYAPIGGSI---VCDEVAHVI  314 (472)
T ss_dssp             GG-TTTSSCCEEEE---EEHHHHHHH
T ss_pred             hh-hcCCcceEEEE---ECHHHHHhc
Confidence            99 53449999998   799999988

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=8.9e-25  Score=230.38  Aligned_cols=350  Identities=10%  Similarity=0.031  Sum_probs=219.8

Q ss_pred             CHHHHHHHHHHHhcccC----CCcccCCC-CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         27 PDDVKQRAQAVLDGCRG----QSVGSYTD-SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~----~~~~~Y~~-~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |..+.+++.+.+.....    .+...|.+ ..-..++++.+++++    |  +++++|++|+|++++++.++.++.++++
T Consensus        80 p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t~al~~~~~~~~~~~~  153 (465)
T 3e9k_A           80 PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----G--ANEKEIALMNALTVNLHLLMLSFFKPTP  153 (465)
T ss_dssp             ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----T--CCGGGEEECSCHHHHHHHHHHHHCCCCS
T ss_pred             hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----C--CCcCCEEEECCHHHHHHHHHHHhccccC
Confidence            56677777666654210    11111222 122245777777776    4  4578999999999999999999998886


Q ss_pred             CCCCeEEEcCCCChhHHH----HHHhcCCEEE----EE-ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC
Q psy13922        102 GKKPGVLIPIPQYPLYSA----SLAEFNMEQI----GY-YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG  172 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~----~v-~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG  172 (509)
                       ++++|+++.|+|++...    .++..|+++.    .+ +.+  .++.+|++.|++.++++..  ++++|++++|+||||
T Consensus       154 -~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~--~~~~~d~~~l~~~i~~~~~--~~~lv~~~~~~n~tG  228 (465)
T 3e9k_A          154 -KRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE--GEETLRIEDILEVIEKEGD--SIAVILFSGVHFYTG  228 (465)
T ss_dssp             -SSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT--TCSSCCHHHHHHHHHHHGG--GEEEEEEESBCTTTC
T ss_pred             -CCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC--CCCccCHHHHHHHHHhcCC--CeEEEEEeCcccCcc
Confidence             55679999999998544    5666888752    22 332  3468899999999974211  689999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       173 ~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+++   +++|.++|+++|+++|+|++|+....     ...+....         . .++++|++|.++|.|+ ++|+++
T Consensus       229 ~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~-----~~~~~~~~---------~-D~~~~s~~K~l~~gp~-~~g~l~  289 (465)
T 3e9k_A          229 QHFN---IPAITKAGQAKGCYVGFDLAHAVGNV-----ELYLHDWG---------V-DFACWCSYKYLNAGAG-GIAGAF  289 (465)
T ss_dssp             BBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHT---------C-CEEEECSSSTTCCCTT-CCCEEE
T ss_pred             eeec---HHHHHHHHHHcCCEEEEEhhhhcCCc-----CCchhhcC---------C-CEEEECcccccccCCC-ceEEEE
Confidence            9988   78899999999999999999976322     22333221         1 3556799999942233 678887


Q ss_pred             eecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                         .++++.+.+.....++.+.........   .....+..     ....+..++....+..++..+++          .
T Consensus       290 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~gt~~~~~~~a~~aal~----------~  348 (465)
T 3e9k_A          290 ---IHEKHAHTIKPALVGWFGHELSTRFKM---DNKLQLIP-----GVCGFRISNPPILLVCSLHASLE----------I  348 (465)
T ss_dssp             ---ECGGGTTTSCCSSCCGGGBCHHHHTTC---CSCCCBCS-----SGGGGCCSCCCHHHHHHHHHHHH----------H
T ss_pred             ---EcHHHHhhcCCcccCccCCCCCccccc---CCCcCcCC-----ChHHhccCCccHHHHHHHHHHHH----------H
Confidence               577776655432222211110000000   00000000     00111222222223344443322          2


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHhcC----------CCCeeccCC----ceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        333 FSRE-KQSVLDSLKQRAKMVADTFNSI----------EGMSCNPVQ----GAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       333 ~~~~-~~~~~~~~~~~~~~l~~~L~~~----------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      +.++ ++++++++.++++++.+.|+++          +++++..|.    .+.++|+.+..              +... 
T Consensus       349 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--------------~~~~-  413 (465)
T 3e9k_A          349 FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--------------PNKD-  413 (465)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--------------TTCC-
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--------------CHHH-
Confidence            2222 6888999999999999999884          688887654    25555655541              1122 


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +...|.++||.+..    ..                                                ++          
T Consensus       414 l~~~L~~~Gi~v~~----~~------------------------------------------------~~----------  431 (465)
T 3e9k_A          414 VFQELEKRGVVCDK----RN------------------------------------------------PN----------  431 (465)
T ss_dssp             HHHHHHTTTEECEE----ET------------------------------------------------TT----------
T ss_pred             HHHHHHHCCEEEec----CC------------------------------------------------CC----------
Confidence            34556677998862    11                                                23          


Q ss_pred             eEEEEe-e--cChHHHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTI-L--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       478 ~~Rls~-~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                      ++|+|+ .  ++.++++++++.|++++++.
T Consensus       432 ~iRis~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          432 GIRVAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             EEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             EEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence            899997 2  79999999999999998653

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.93  E-value=1.5e-24  Score=228.34  Aligned_cols=211  Identities=11%  Similarity=0.059  Sum_probs=146.0

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-------
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-------   98 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------   98 (509)
                      -+|.+.+++.+++.+......+.| +.....+|++.+++++    +  ...++|++|+|+++|+..+++.++.       
T Consensus        92 ~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~~L~e~la~~~----~--~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~  164 (457)
T 3tfu_A           92 GHPALDQALTTQLRVMNHVMFGGL-THEPAARLAKLLVDIT----P--AGLDTVFFSDSGSVSVEVAAKMALQYWRGRGL  164 (457)
T ss_dssp             TCHHHHHHHHHHHHHCSCCCSSSE-ECHHHHHHHHHHHHHS----S--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhC----C--CCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence            378999999999987321111222 2333345555555554    3  3456999999999999999999875       


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCC--------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEE
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNM--------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                      ++   ++.|++..++|+++...+...+.              .+..++.........|++.|++.+++...  ++++|++
T Consensus       165 ~g---~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~--~~aavi~  239 (457)
T 3tfu_A          165 PG---KRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG--ELAAVVV  239 (457)
T ss_dssp             TT---CCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG--GEEEEEE
T ss_pred             CC---CceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC--CEEEEEE
Confidence            33   34899999999987655554421              22223322211112378999999984211  6788888


Q ss_pred             eC-CCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        165 IN-PGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       165 ~~-p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      +. ++||+|..+ +++++++|.++|++||+++|+||+|.+|...+.  ..+....  +..+     +++   ||||.++ 
T Consensus       240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~--~~a~~~~--~~~p-----dii---t~sK~l~-  306 (457)
T 3tfu_A          240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA--LFAADHA--GVSP-----DIM---CVGKALT-  306 (457)
T ss_dssp             CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TCCC-----SEE---EECGGGG-
T ss_pred             eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc--hhHhHhc--CCCc-----eEE---EEChhhh-
Confidence            87 899999865 788899999999999999999999999876542  2233222  1211     233   8899994 


Q ss_pred             CCC-CeeEEEeeecCCHHHHHHHH
Q psy13922        243 ECG-LRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       243 ~~G-lr~G~v~~~~~~~~~~~~l~  265 (509)
                       .| +|+||++   +++++++.+.
T Consensus       307 -gG~~~lG~v~---~~~~i~~~~~  326 (457)
T 3tfu_A          307 -GGYLSLAATL---CTADVAHTIS  326 (457)
T ss_dssp             -TTSSCCEEEE---EEHHHHHHHH
T ss_pred             -CCCcceEEEE---EcHHHHHHhh
Confidence             56 7999998   7999999886

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.93  E-value=6.9e-25  Score=228.83  Aligned_cols=206  Identities=13%  Similarity=0.047  Sum_probs=141.0

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVDGK  103 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~~  103 (509)
                      -||.+++++.+++.+   .... |.+.....+|++.+++++    +   ..++|++|+|+++++..+++.++.  +++  
T Consensus        70 ~~p~v~~A~~~~~~~---~~~~-~~~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gsea~~~ai~~a~~~~~~~--  136 (429)
T 3k28_A           70 ANDRVVEALKAVAER---GTSF-GAPTEIENKLAKLVIERV----P---SIEIVRMVNSGTEATMSALRLARGYTGRN--  136 (429)
T ss_dssp             SCHHHHHHHHHHHHH---CSCC-SSCCHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHHHHHHHHHHHHTCC--
T ss_pred             CCHHHHHHHHHHHhh---CcCc-CCCCHHHHHHHHHHHHhC----C---CCCEEEEeCChHHHHHHHHHHHHHhhCCC--
Confidence            389999999999987   3333 334556678888888876    2   468999999999999999998865  334  


Q ss_pred             CCeEEEcCCCChhHHHHHHhc-CCEEEEEecCCCCCCC------------CCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922        104 KPGVLIPIPQYPLYSASLAEF-NMEQIGYYLDESKQWG------------LPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~------------~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                        .|++..|+|+++...+... |.....+.......+.            -|++.|++.++....  ++++|+++.++|+
T Consensus       137 --~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~~~vi~ep~~~~  212 (429)
T 3k28_A          137 --KILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD--DIACVIVEPVAGN  212 (429)
T ss_dssp             --EEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG--GEEEEEECSSBCT
T ss_pred             --EEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC--CEEEEEEcCCCCC
Confidence              8999999998765433222 2211111111111110            179999999975311  4666666666666


Q ss_pred             CCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        171 TGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       171 tG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      +|.. .+++++++|.++|++||+++|+||+|.+| ..+  .......  .+..+     +   +.++||.+ | +|+|+|
T Consensus       213 ~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g--~~~~~~~--~~~~~-----d---i~t~sK~~-~-~G~~iG  277 (429)
T 3k28_A          213 MGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA--YNCGQGY--YGVTP-----D---LTCLGKVI-G-GGLPVG  277 (429)
T ss_dssp             TSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS--TTHHHHH--HTCCC-----S---EEEECGGG-G-TTSCCE
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC--cchHHHH--hCCCC-----c---eehhhhhh-c-CCCCeE
Confidence            6764 46888999999999999999999999988 543  1212211  11111     1   34789999 5 599999


Q ss_pred             EEeeecCCHHHHHHHHH
Q psy13922        250 YSEVINLDPGVKAMLHK  266 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l~~  266 (509)
                      |++   +++++++.+..
T Consensus       278 ~~~---~~~~~~~~~~~  291 (429)
T 3k28_A          278 AYG---GKAEIMRQVAP  291 (429)
T ss_dssp             EEE---ECHHHHTTBTT
T ss_pred             EEE---EcHHHHhhhcc
Confidence            998   78999888764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.92  E-value=4.2e-23  Score=212.25  Aligned_cols=173  Identities=17%  Similarity=0.208  Sum_probs=138.9

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNME  127 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~  127 (509)
                      ..+..+++++++++++      .+ +.|++++| ++++..+++.+.++||    .|+++.|+|.+....    ++..|.+
T Consensus        51 ~~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~~g~~  118 (386)
T 1cs1_A           51 NPTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRLFDSLAKRGCYR  118 (386)
T ss_dssp             CHHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred             CccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHhCCCC----EEEEecCCcHhHHHHHHHHHHhcCCE
Confidence            4567899999999983      12 56666666 8999999999988888    999999999985543    3667999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      ++.++.+       |++.|++.+++     ++++|++++|+||||.+++   +++|.++|+++|+++|+||+|..+.+..
T Consensus       119 ~~~~~~~-------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~  183 (386)
T 1cs1_A          119 VLFVDQG-------DEQALRAALAE-----KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN  183 (386)
T ss_dssp             EEEECTT-------CHHHHHHHHHT-----CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred             EEEeCCC-------CHHHHHHhhcc-----CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            9988753       79999999986     7999999999999999987   8999999999999999999999876531


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHHHHHHhhhc
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKAMLHKSISA  270 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~~l~~~~~~  270 (509)
                           ++     +.+      ..+++.|+||.+ |.+|.|+ ||+++  .++++++.+......
T Consensus       184 -----~~-----~~~------~di~~~s~sK~~-~~~~~~~~G~~~~--~~~~l~~~l~~~~~~  228 (386)
T 1cs1_A          184 -----PL-----ALG------ADLVLHSCTKYL-NGHSDVVAGVVIA--KDPDVVTELAWWANN  228 (386)
T ss_dssp             -----GG-----GGT------CSEEEEETTTTT-TCSSCCCCEEEEE--SSHHHHHHHHHHHHH
T ss_pred             -----cc-----ccC------ceEEEEcCcccc-cCCCCceeEEEEe--CcHHHHHHHHHHHHh
Confidence                 11     111      256678999999 6788886 99873  445888888776553

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.92  E-value=1.8e-23  Score=219.74  Aligned_cols=352  Identities=13%  Similarity=-0.021  Sum_probs=226.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC---CcEEEeCCHHHHHHHHHHHhhc-----
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW---QDVILSAGASDGIKSVLKLLIE-----   98 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~-----   98 (509)
                      ++.+.+++.+++..   . ..+|....+..++++++++++.+.+|.+...   ..+++|+|+++++.+++.+++.     
T Consensus        55 ~~~v~e~~~~a~~~---~-~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~  130 (452)
T 2dgk_A           55 DENVHKLMDLSINK---N-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR  130 (452)
T ss_dssp             CHHHHHHHHHTTTC---B-TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcc---C-CCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            46777777777755   2 2236666788899999999998888855332   2499999999999999988864     


Q ss_pred             ---CCCC-CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         99 ---DVDG-KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        99 ---~gd~-~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                         +|.+ .++.|+++. +|..+...++..|++++.++.++ .++.+|++.|++++++     ++++|++++|+||||.+
T Consensus       131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~-----~t~~v~~~~~~n~tG~~  203 (452)
T 2dgk_A          131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE-----NTIGVVPTFGVTYTGNY  203 (452)
T ss_dssp             HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT-----TEEEEECBBSCTTTCBB
T ss_pred             HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh-----CCEEEEEEcCCcCCccc
Confidence               4410 134899999 99999999999999999999875 2478999999999987     78999999999999999


Q ss_pred             CCHHHHHHHHHHHHHC------CcEEEEcccCCcccc---cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        175 LTKENIQDIIKFAHRE------KLFLFADEVYQDNVY---AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~------~i~lI~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      .+   +++|+++|+++      |+++++|++|..+..   .+... ..+       .  ..+.++++ .|.+|.  |++|
T Consensus       204 ~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-------~--~~~~d~~~-~~~hK~--~~~~  267 (452)
T 2dgk_A          204 EF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-WDF-------R--LPRVKSIS-ASGHKF--GLAP  267 (452)
T ss_dssp             CC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CST-------T--STTEEEEE-EETTTT--TCCC
T ss_pred             CC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch-hhc-------C--CCCCcEEE-ECcccc--cCCC
Confidence            66   88999999995      999999999998753   11100 000       0  11233454 488995  4588


Q ss_pred             CeeEEEeeecCCHHHH-HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc-hhhcccCCC
Q psy13922        246 LRGGYSEVINLDPGVK-AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT-VMDCVVNPP  323 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~  323 (509)
                      .++||+++  .++.++ +.+.. ...+...... .   ..+-....+...+                ++. ++..+    
T Consensus       268 ~~~G~~~~--~~~~~~~~~~~~-~~~~~~~~~~-~---~~~~~~r~~~~~~----------------~~~aal~~l----  320 (452)
T 2dgk_A          268 LGCGWVIW--RDEEALPQELVF-NVDYLGGQIG-T---FAINFSRPAGQVI----------------AQYYEFLRL----  320 (452)
T ss_dssp             SSCEEEEE--SSGGGSCGGGCE-EECCTTCCEE-E---CCSCCSCBCHHHH----------------HHHHHHHHH----
T ss_pred             CCeEEEEE--cCHHHHHHHhcc-CccccCCCCC-C---cccCCCChhHHHH----------------HHHHHHHHH----
Confidence            99999984  555433 33311 0111110000 0   0000000000000                111 11111    


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC-----CceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        324 QPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV-----QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                               ..+.++++.+...++++++.+.|++++++++..+     ..+++.+ ++.-..       ..++ +... +
T Consensus       321 ---------g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f-~~~~~~-------~~~~-~~~~-l  381 (452)
T 2dgk_A          321 ---------GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF-KLKDGE-------DPGY-TLYD-L  381 (452)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEE-EECTTC-------CCSC-CHHH-H
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEE-EecCcc-------cccC-CHHH-H
Confidence                     1123677888899999999999999978887643     4444443 333100       0001 1134 3


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      .+.|.+.||.+........                                                       ..+..+
T Consensus       382 ~~~L~~~Gi~v~~~~~~~~-------------------------------------------------------~~~~~~  406 (452)
T 2dgk_A          382 SERLRLRGWQVPAFTLGGE-------------------------------------------------------ATDIVV  406 (452)
T ss_dssp             HHHHHHTTCBCCEEECSTT-------------------------------------------------------CTTCEE
T ss_pred             HHHHHhcCCeeeeeeCCcc-------------------------------------------------------cCCeEE
Confidence            4555667987653111000                                                       012238


Q ss_pred             EEEEee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        479 FRTTIL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       479 ~Rls~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      +|+++.  ++.++++.+++.|+++++++.+
T Consensus       407 lRis~~~~~t~e~id~li~~l~~~~~~~~~  436 (452)
T 2dgk_A          407 MRIMCRRGFEMDFAELLLEDYKASLKYLSD  436 (452)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999998  5789999999999999877654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.92  E-value=3.9e-24  Score=224.06  Aligned_cols=316  Identities=9%  Similarity=0.087  Sum_probs=208.2

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-------
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-------   98 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------   98 (509)
                      -|+.+++++.+++....... ..|. .....++++.+++++    |    .++|++|+|+++|+..+++.++.       
T Consensus        93 ~~p~v~~Ai~~~~~~~~~~~-~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~sGseA~~~al~~~~~~~~~~~g  162 (439)
T 2oat_A           93 CHPKIVNALKSQVDKLTLTS-RAFY-NNVLGEYEEYITKLF----N----YHKVLPMNTGVEAGETACKLARKWGYTVKG  162 (439)
T ss_dssp             TCHHHHHHHHHHHTTCSCCC-TTSE-ESSHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcCccc-CccC-CHHHHHHHHHHHHhc----C----CCEEEEeCCHHHHHHHHHHHHHHHhhhccC
Confidence            57899999999998732111 1232 223366777777766    3    57899999999999999998752       


Q ss_pred             --CCCCCCCeEEEcCCCChhHHH-HHHhcC------------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE
Q psy13922         99 --DVDGKKPGVLIPIPQYPLYSA-SLAEFN------------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus        99 --~gd~~~~~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                        +|   ++.|++..|+|+++.. .+...|            ..+..+|.       .|++.|++.++..    ++++|+
T Consensus       163 ~~~g---~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~~----~~~~vi  228 (439)
T 2oat_A          163 IQKY---KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQDP----NVAAFM  228 (439)
T ss_dssp             CCTT---CCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHHHTTST----TEEEEE
T ss_pred             CCCC---CCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHHHhCCC----CEEEEE
Confidence              34   2399999999988654 344334            34555553       2799999998531    677777


Q ss_pred             EeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        164 IINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       164 i~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      ++..+|++|. .++++++++|.++|++||+++|+||+|.+|...+.  ...+...  ++.     .+++   |+||.+ |
T Consensus       229 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~--~~~~~~~--~~~-----~Di~---t~sK~l-~  295 (439)
T 2oat_A          229 VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVDYE--NVR-----PDIV---LLGKAL-S  295 (439)
T ss_dssp             ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGGG--TCC-----CSEE---EECGGG-G
T ss_pred             EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc--chhHHHh--CCC-----CcEE---Eecccc-c
Confidence            7666778996 67999999999999999999999999988765542  2111111  111     1233   889999 5


Q ss_pred             CCC-CeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhccc
Q psy13922        243 ECG-LRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV  320 (509)
Q Consensus       243 ~~G-lr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~  320 (509)
                       +| +|+||++   .++++++.+..... ...+.+.+                                  ++++....+
T Consensus       296 -~G~~~~G~v~---~~~~~~~~l~~~~~~~t~~~~~~----------------------------------~~aaa~aal  337 (439)
T 2oat_A          296 -GGLYPVSAVL---CDDDIMLTIKPGEHGSTYGGNPL----------------------------------GCRVAIAAL  337 (439)
T ss_dssp             -TTSSCCEEEE---ECHHHHTTSCTTSSCCSSTTCHH----------------------------------HHHHHHHHH
T ss_pred             -CCCCCeEEEE---ECHHHHhccCCCCcccCCCcCHH----------------------------------HHHHHHHHH
Confidence             68 9999998   68888877654221 23344444                                  222222221


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee---ccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC---NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      +          ...  .+.+.+.++++.+++.+.|+++ ++.+   .++ .|.++|+++....         + .+...+
T Consensus       338 ~----------~~~--~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~-~g~~~~v~l~~~~---------~-~~~~~l  393 (439)
T 2oat_A          338 E----------VLE--EENLAENADKLGIILRNELMKL-PSDVVTAVRG-KGLLNAIVIKETK---------D-WDAWKV  393 (439)
T ss_dssp             H----------HHH--HTTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEE-ETTEEEEEECCCS---------S-CCHHHH
T ss_pred             H----------HHh--hhhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEe-eeeEEEEEEecCc---------c-HHHHHH
Confidence            1          111  1245677888888999999887 4432   233 3455666664110         0 123444


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ...+ .++||.+.|+.                                                    .+          
T Consensus       394 ~~~l-~~~Gv~v~~~~----------------------------------------------------~~----------  410 (439)
T 2oat_A          394 CLRL-RDNGLLAKPTH----------------------------------------------------GD----------  410 (439)
T ss_dssp             HHHH-HHTTEECCBSS----------------------------------------------------SS----------
T ss_pred             HHHH-HHCCeEEecCC----------------------------------------------------CC----------
Confidence            4444 45799998731                                                    12          


Q ss_pred             eEEEEee--cChHHHHHHHHHHHHHHHH
Q psy13922        478 HFRTTIL--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       478 ~~Rls~~--~~~~~i~~~~~~l~~~~~~  503 (509)
                      ++|+++.  .+++++++++++|++++++
T Consensus       411 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          411 IIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            8999664  8999999999999998753

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.92  E-value=1.2e-24  Score=228.65  Aligned_cols=198  Identities=12%  Similarity=0.088  Sum_probs=134.7

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH---hhcCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL---LIEDVDG  102 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~gd~  102 (509)
                      -|+.+++++.+.+..   ...  |+   +..++++++++++.+.++   ..++|++|+|+++|+..+++.   +.++ + 
T Consensus        74 ~~~~v~~a~~~~~~~---~~~--~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~~~-~-  140 (453)
T 2cy8_A           74 GHPRVNAAIAEALSH---GVQ--YA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFTGR-R-  140 (453)
T ss_dssp             TCHHHHHHHHHHHTT---TCS--SC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHHCC-C-
T ss_pred             CCHHHHHHHHHHHHh---CCC--CC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCC-C-
Confidence            378999999999877   221  32   246789999999988764   578999999999999999998   6544 3 


Q ss_pred             CCCeEEEcCCCChhHHHHHHh-c----------CCE------EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922        103 KKPGVLIPIPQYPLYSASLAE-F----------NME------QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~-~----------g~~------~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                         .|++..|+|+++...+.. .          |..      +..++      + .|++.|++.+++...  ++++|+++
T Consensus       141 ---~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~-~d~~~le~~l~~~~~--~~~~vi~e  208 (453)
T 2cy8_A          141 ---MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------P-DDIEGMREVFANHGS--DIAAFIAE  208 (453)
T ss_dssp             ---EEEEECC----------------------------CGGGEEEEC------T-TCHHHHHHHHHHHGG--GEEEEEEC
T ss_pred             ---EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------C-CCHHHHHHHHHhcCC--CEEEEEEC
Confidence               899999999987654322 1          221      22222      1 389999999985211  56776666


Q ss_pred             CCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        166 NPGNPTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       166 ~p~NPtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      ..+||||.+ .+++++++|.++|++||++||+||+|.+| ..+  ....+...  ++.+     +   +.|+||.+ | +
T Consensus       209 p~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g--~~~~~~~~--~~~~-----d---i~s~sK~l-~-~  273 (453)
T 2cy8_A          209 PVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG--NHGMQALL--DVQP-----D---LTCLAKAS-A-G  273 (453)
T ss_dssp             SSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC--TTHHHHHH--TCCC-----S---EEEEEGGG-G-T
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC--chhhhHHh--CCCC-----c---EEEEChhh-h-C
Confidence            556789975 57999999999999999999999999987 433  11122111  1111     2   33889999 5 6


Q ss_pred             CCeeEEEeeecCCHHHHHHHHH
Q psy13922        245 GLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |+|+||++   .++++++.+..
T Consensus       274 G~~~G~v~---~~~~~~~~l~~  292 (453)
T 2cy8_A          274 GLPGGILG---GREDVMGVLSR  292 (453)
T ss_dssp             TSSCEEEE---ECHHHHTTSSS
T ss_pred             CcceEEEe---chHHHHHHhcc
Confidence            99999998   68888887654

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.92  E-value=1.6e-24  Score=225.74  Aligned_cols=199  Identities=9%  Similarity=0.049  Sum_probs=137.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CCCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DVDGKKP  105 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~gd~~~~  105 (509)
                      |+.+++++.+++..   .....| +    .++++++++.+.+.++   .+++|++|+|+++++..+++.... .+   ++
T Consensus        70 ~p~v~~a~~~~~~~---~~~~~~-~----~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~~al~~a~~~~~---~~  135 (427)
T 3fq8_A           70 HPEVIEALKVAMEK---GTSFGA-P----CALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRIMRAYTG---RD  135 (427)
T ss_dssp             CHHHHHHHHHHHTT---CSCCSS-C----CHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHC---CC
T ss_pred             CHHHHHHHHHHHHh---CCCcCC-C----CHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhC---CC
Confidence            89999999999987   222223 2    3455666666655554   578999999999999999965432 22   23


Q ss_pred             eEEEcCCCChhHHHHHHhc-CC-------------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe
Q psy13922        106 GVLIPIPQYPLYSASLAEF-NM-------------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII  165 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~-g~-------------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~  165 (509)
                      .|++..|+|+++...+... |.                   .+..++.+       |++.|++.+++..  .++++|+++
T Consensus       136 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~--~~~~~vi~~  206 (427)
T 3fq8_A          136 KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAENP--GEIAGVILE  206 (427)
T ss_dssp             EEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHHST--TTEEEEEEC
T ss_pred             EEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHhCC--CCEEEEEEc
Confidence            8999999998754332222 11                   12333321       8999999997631  156777777


Q ss_pred             CCCCCCCCCCC-HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        166 NPGNPTGQVLT-KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       166 ~p~NPtG~~~s-~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      .++|++|.+.+ ++++++|.++|++||++||+||+|.+| ..+.  ......  .+..+     +   +.|+||.+ | +
T Consensus       207 p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~~~~--~~~~~-----d---i~t~sK~~-~-~  271 (427)
T 3fq8_A          207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY--GGVQEK--FGVTP-----D---LTTLGKII-G-G  271 (427)
T ss_dssp             SSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT--THHHHH--TTCCC-----S---EEEECGGG-G-T
T ss_pred             CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chhhHh--cCCCC-----C---hhhhhhhh-h-C
Confidence            77888887555 666999999999999999999999988 5432  111111  11111     1   45889999 5 8


Q ss_pred             CCeeEEEeeecCCHHHHHHHHH
Q psy13922        245 GLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |+|+||++   +++++++.+..
T Consensus       272 G~~~G~~~---~~~~~~~~~~~  290 (427)
T 3fq8_A          272 GLPVGAYG---GKREIMQLVAP  290 (427)
T ss_dssp             TSSCEEEE---ECHHHHTTBTT
T ss_pred             CcceEEEE---EcHHHHHhhcc
Confidence            99999998   79999988865

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.92  E-value=2.2e-23  Score=215.03  Aligned_cols=172  Identities=16%  Similarity=0.162  Sum_probs=139.9

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNME  127 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~  127 (509)
                      .....++++.++++++        .+++++++|+++|+..+++.+.++||    +|+++.|+|.++...+    +..|.+
T Consensus        65 ~~~~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~g~~  132 (392)
T 3qhx_A           65 NPTRTALEAALAAVED--------AAFGRAFSSGMAAADCALRAMLRPGD----HVVIPDDAYGGTFRLIDKVFTGWNVE  132 (392)
T ss_dssp             CHHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred             ChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCcchHHHHHHHHHHhcCcE
Confidence            3455788888888873        24789999999999999999998888    9999999999887766    667999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      ++.++.+       |++.|++++++     ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+... 
T Consensus       133 ~~~v~~~-------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~-  196 (392)
T 3qhx_A          133 YTPVALA-------DLDAVRAAIRP-----TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ-  196 (392)
T ss_dssp             EEEECTT-------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-
T ss_pred             EEEeCCC-------CHHHHHHhhCC-----CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC-
Confidence            9998754       79999999886     7999999999999999977   999999999999999999999864321 


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                          .+.     +.+      ..++++|+||.+ |.+| +++||++.  .++++.+.+.....
T Consensus       197 ----~~~-----~~~------~di~~~S~sK~l-g~~g~~~~G~v~~--~~~~~~~~l~~~~~  241 (392)
T 3qhx_A          197 ----QPL-----SLG------ADVVLHSTTKYI-GGHSDVVGGALVT--NDEELDQSFAFLQN  241 (392)
T ss_dssp             ----CGG-----GGT------CSEEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHH
T ss_pred             ----ChH-----HhC------CcEEEEcCcccc-CCCCCceEEEEEE--CcHHHHHHHHHHHH
Confidence                111     111      146678999999 5566 79999973  45788888877655

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.92  E-value=2.8e-24  Score=219.73  Aligned_cols=198  Identities=19%  Similarity=0.190  Sum_probs=155.1

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCCCC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDVDG  102 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~  102 (509)
                      |.+++.+++++.+.+..   ..   |.+..+..++|+.++++++        .+++++|+|+++|+..+++++ .++|| 
T Consensus        13 ~~~~~~~~~a~~~~~~~---~~---~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd-   77 (373)
T 3frk_A           13 DEIEYEIKFKFEEIYKR---NW---FILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGD-   77 (373)
T ss_dssp             HHHHHHHHHHHHHHHHH---TC---CSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTC-
T ss_pred             CCCCHHHHHHHHHHHHC---CC---ccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcC-
Confidence            44567788888888776   22   6677788999999999983        248999999999999999999 88888 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                         .|+++.|+|.++...++..|++++.++.+++ ++.+|++.|++.+++     ++++|+   |+||||...+   +++
T Consensus        78 ---~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~-----~~~~v~---~~n~~G~~~~---l~~  142 (373)
T 3frk_A           78 ---EVIVPSNTFIATALAVSYTGAKPIFVEPDIR-TYNIDPSLIESAITE-----KTKAII---AVHLYGQPAD---MDE  142 (373)
T ss_dssp             ---EEEEETTSCTHHHHHHHHHSCEEEEECEETT-TTEECGGGTGGGCCT-----TEEEEE---EECCTTCCCC---HHH
T ss_pred             ---EEEECCCCcHHHHHHHHHcCCEEEEEecccc-ccCcCHHHHHHhcCC-----CCeEEE---EECCCcCccc---HHH
Confidence               9999999999999999999999999998754 468899999998876     788888   6789999876   889


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc--cccCCCCCCeeEEEeeecCCHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS--KGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      |.++|+++|+++|+|++|+.+..-.....          +.   .. -+.+.|||  |.+ |.+|. +|+++.  .++++
T Consensus       143 i~~l~~~~~~~li~D~a~~~g~~~~~~~~----------~~---~~-d~~~~S~~~~K~l-~~~g~-gg~~~~--~~~~~  204 (373)
T 3frk_A          143 IKRIAKKYNLKLIEDAAQAHGSLYKGMKV----------GS---LG-DAAGFSFYPAKNL-GSLGD-GGAVVT--NDKDL  204 (373)
T ss_dssp             HHHHHHHHTCEEEEECTTCTTCEETTEET----------TS---SS-SEEEEECCTTSSS-CCSSS-CEEEEE--SCHHH
T ss_pred             HHHHHHHcCCEEEEECCcccCCEECCEec----------cc---cc-cEEEEeCcCCCcc-Cccce-eEEEEe--CCHHH
Confidence            99999999999999999986443211110          00   01 24455877  988 43254 788763  66788


Q ss_pred             HHHHHHhhh
Q psy13922        261 KAMLHKSIS  269 (509)
Q Consensus       261 ~~~l~~~~~  269 (509)
                      .+.+.....
T Consensus       205 ~~~~~~~~~  213 (373)
T 3frk_A          205 AEKIKALSN  213 (373)
T ss_dssp             HHHHHHHHB
T ss_pred             HHHHHHHHh
Confidence            888877654

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2e-23  Score=219.15  Aligned_cols=294  Identities=14%  Similarity=0.044  Sum_probs=192.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCC---cchHHHH--HHHH-HHHhhhcCCCCCCCcEEE-eCCHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS---PGIEIIR--RHVA-QYISRRDGQPADWQDVIL-SAGASDGIKSVLK   94 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~---~g~~~lr--~~va-~~l~~~~g~~~~~~~i~~-t~G~~~al~~~~~   94 (509)
                      +.+.+|+.+++++.+.+.+   .....|+..   .|...++  ++++ +.+.+.+|.+    .+.+ ++|+++++..++.
T Consensus        53 ~~~~~~~~v~~a~~~~~~~---~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~----~~~v~~~sGs~a~~~a~~  125 (447)
T 3h7f_A           53 SENFVPRAVLQAQGSVLTN---KYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLH  125 (447)
T ss_dssp             TCCCCCHHHHHHHTSGGGG---CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhcC---CccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC----ceEEEeCCHHHHHHHHHH
Confidence            3444699999999887764   111123321   1333333  4455 6665555632    2444 7788899999999


Q ss_pred             HhhcCCCCCCCeEEEcCCCChhHH-H----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922         95 LLIEDVDGKKPGVLIPIPQYPLYS-A----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus        95 ~l~~~gd~~~~~Vlv~~p~y~~~~-~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      +++++||    +|+++.|+|.++. .    .+...+..++.++.+++ ++.+|++.|++.++..    ++++|++++|+|
T Consensus       126 ~~~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~----~~~~i~~~~~~~  196 (447)
T 3h7f_A          126 ALMSPGE----RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEF----RPKVIIAGWSAY  196 (447)
T ss_dssp             HHCCTTC----EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHH----CCSEEEEECSSC
T ss_pred             HhcCCCC----EEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhc----CCeEEEEcCCCC
Confidence            9999998    9999999987621 1    12224567777776644 4679999999999764    789999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQD-NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      |++.     ++++|.++|+++|+++|+||+|.. +.+.+.  ..+..   .       ..+ +++.|+||.+   +|+|+
T Consensus       197 ~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~--~~~~~---~-------~~d-i~~~s~sK~l---~G~~g  255 (447)
T 3h7f_A          197 PRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL--HPSPV---P-------HAD-VVSTTVHKTL---GGGRS  255 (447)
T ss_dssp             CSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCST---T-------TCS-EEEEESSGGG---CCCSC
T ss_pred             CCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCC--CCCCC---C-------CCc-EEEecCCcCC---CCCCe
Confidence            9887     589999999999999999999743 333321  11111   1       112 4477999987   37899


Q ss_pred             EEEeeecCCHHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      ||++   .++++++.+.......  .+++..                                  ...++..++.     
T Consensus       256 G~i~---~~~~~~~~l~~~~~~~~~~~~~~~----------------------------------~~~a~~~a~~-----  293 (447)
T 3h7f_A          256 GLIV---GKQQYAKAINSAVFPGQQGGPLMH----------------------------------VIAGKAVALK-----  293 (447)
T ss_dssp             EEEE---ECGGGHHHHHHHHTTTTCSSCCHH----------------------------------HHHHHHHHHH-----
T ss_pred             EEEE---ECHHHHHHHhhhcCCcccCCccHH----------------------------------HHHHHHHHHH-----
Confidence            9998   6888888887654422  222222                                  1112111111     


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSI----EGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                          .....+++..++.+.++++.+.+.|.+.    +|+.+.. +.++.++|+++.-.          +  .+...+..+
T Consensus       294 ----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~  357 (447)
T 3h7f_A          294 ----IAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS----------P--LDGQAAEDL  357 (447)
T ss_dssp             ----HTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTS----------S--CCHHHHHHH
T ss_pred             ----HhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCC----------C--CCHHHHHHH
Confidence                0011235677788888888888888775    5777764 34566777777511          1  133346788


Q ss_pred             HhhcCeEEe
Q psy13922        402 LERTGICIV  410 (509)
Q Consensus       402 l~~~gI~v~  410 (509)
                      |+++||.+.
T Consensus       358 l~~~GI~v~  366 (447)
T 3h7f_A          358 LHEVGITVN  366 (447)
T ss_dssp             HHHTTEECB
T ss_pred             HHHCCeEEe
Confidence            888999998

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.92  E-value=3.1e-23  Score=215.45  Aligned_cols=167  Identities=17%  Similarity=0.222  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh----cCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE----FNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~----~g~~~~~  130 (509)
                      ..++++.+++++    |    .+++++++|+++|+..++++++++||    +|+++.|+|.++...++.    .|.+++.
T Consensus        83 ~~~l~~~la~~~----g----~~~~~~~~sG~~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~  150 (414)
T 3ndn_A           83 VSVFEERLRLIE----G----APAAFATASGMAAVFTSLGALLGAGD----RLVAARSLFGSCFVVCSEILPRWGVQTVF  150 (414)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHH----C----CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCccchHHHHHHHHHHHcCcEEEE
Confidence            355666666665    4    36789999999999999999999998    999999999998877654    8999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++.+       |++.|++++++     ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    
T Consensus       151 v~~~-------d~~~l~~ai~~-----~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~----  211 (414)
T 3ndn_A          151 VDGD-------DLSQWERALSV-----PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ----  211 (414)
T ss_dssp             ECTT-------CHHHHHHHTSS-----CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC----
T ss_pred             eCCC-------CHHHHHHhcCC-----CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            9864       78999999876     7999999999999999977   889999999999999999999853321    


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHH-HHHHhh
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKA-MLHKSI  268 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~-~l~~~~  268 (509)
                       .++     +.+      ..++++|+||.+ |.+| +++|+++   .+++.+. .++...
T Consensus       212 -~~~-----~~g------~div~~S~sK~l-~~~G~~~~G~vv---~~~~~~~~~l~~~~  255 (414)
T 3ndn_A          212 -QGF-----PLG------VDVVVYSGTKHI-DGQGRVLGGAIL---GDREYIDGPVQKLM  255 (414)
T ss_dssp             -CCG-----GGT------CSEEEEETTTTT-TCSSCCCCEEEE---ECHHHHTTHHHHHH
T ss_pred             -Cch-----hcC------CCeEeccCCccc-cCCCCceEEEEE---ECHHHHHHHHHHHH
Confidence             111     111      146678999999 5678 8999998   6776665 665443

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.92  E-value=8.8e-24  Score=222.58  Aligned_cols=351  Identities=17%  Similarity=0.137  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC-----C--
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED-----V--  100 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----g--  100 (509)
                      +.+++++.+++..   +.. .|++..+..++++++++++.        .+++++|+|+++|+..++++++++     |  
T Consensus        53 ~~v~~a~~~~l~~---~~~-~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~  120 (467)
T 2oqx_A           53 GAVTQSMQAAMMR---GDE-AYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD  120 (467)
T ss_dssp             SCCCHHHHHHTTS---CCC-CSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcc---Ccc-eeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHHHHHHHHHHHhccccccCCCC
Confidence            6777777777654   333 48888888999999999983        368999999999999999999887     7  


Q ss_pred             --CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC----CC----CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922        101 --DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD----ES----KQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus       101 --d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~----~~----~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                        |    .|++..+.|..+.......|..++.....    ..    .++.+|++.|++.+++.. ..++++|++++|+||
T Consensus       121 ~~d----~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~-~~~~~~vi~~~~~n~  195 (467)
T 2oqx_A          121 RSK----MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG-PNNVPYIVATITSNS  195 (467)
T ss_dssp             TTT----CEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC-GGGCCCEEEESSBCG
T ss_pred             ccc----eEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC-CCceeEEEEeccccC
Confidence              6    78887555555556666677777654321    11    235689999999998521 016899999999999


Q ss_pred             C-CCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-c---------cccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        171 T-GQVLTKENIQDIIKFAHREKLFLFADEVYQD-N---------VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       171 t-G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      + |.+++.+++++|+++|++||++||+|+++.. .         .+.+    .+...+..+...   ..+++ +.|+||.
T Consensus       196 ~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g----~~~~~~~~~~~~---~~d~~-~~s~sK~  267 (467)
T 2oqx_A          196 AGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD----WTIEQITRETYK---YADML-AMSAKKD  267 (467)
T ss_dssp             GGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT----SCHHHHHHHHGG---GCSEE-EEESSST
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC----ccHHHHhhhhhc---cCCeE-EEecccc
Confidence            8 8999999999999999999999999976543 1         2221    233333211000   11244 5699999


Q ss_pred             cCCCCCCeeEEEeeecCCHH-HHHHHHHhhhc---ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        240 YMGECGLRGGYSEVINLDPG-VKAMLHKSISA---MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~-~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      + |++ + .||++   .+++ +++.+.+....   ..+....+..+               +.             +..+
T Consensus       268 ~-g~~-~-Gg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-------------~~~a  313 (467)
T 2oqx_A          268 A-MVP-M-GGLLC---MKDDSFFDVYTECRTLCVVQEGFPTYGGLE---------------GG-------------AMER  313 (467)
T ss_dssp             T-CCS-S-CEEEE---ECSGGGHHHHHHHHHHHHHTTSSCCCCCCC---------------HH-------------HHHH
T ss_pred             c-CCC-C-ceEEE---ecChhHHHHHHHHHHhhhccCCcccccchh---------------hh-------------HHHH
Confidence            9 665 1 27765   4544 44443332221   11111110000               00             1111


Q ss_pred             hhcccCCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCC-
Q psy13922        316 MDCVVNPPQPGEPSYEQFSREK-QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP-  393 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~-  393 (509)
                      +...+          ..+   + +...+...++.+.+.+.|+++ ++.+. +.+++++|+++..   ..     .+... 
T Consensus       314 l~~~l----------~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~---~~-----~~~~~~  370 (467)
T 2oqx_A          314 LAVGL----------YDG---MNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGK---LL-----PHIPAD  370 (467)
T ss_dssp             HHHHH----------HHT---TCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHH---HS-----TTSCGG
T ss_pred             HHHhh----------Hhh---hhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechh---hc-----ccCCcc
Confidence            11110          111   1 123344567788889999888 88877 7788888876630   00     01111 


Q ss_pred             ---cHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCC
Q psy13922        394 ---SVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGF  470 (509)
Q Consensus       394 ---~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (509)
                         ...++..++.++||.+.|+..|....                           .                  +..+.
T Consensus       371 ~~~~~~l~~~L~~~~gv~~~~~~~~~~~~---------------------------~------------------~~~g~  405 (467)
T 2oqx_A          371 QFPAQALACELYKVAGIRAVEIGSFLLGR---------------------------D------------------PKTGK  405 (467)
T ss_dssp             GCHHHHHHHHHHHHHCEECEEESHHHHCB---------------------------C------------------TTTCS
T ss_pred             cccHHHHHHHHHHhcCceecccccccccc---------------------------c------------------ccccc
Confidence               22334555588999999855321100                           0                  00000


Q ss_pred             CCCCCceeEEEEee---cChHHHHHHHHHHHHHHHHHH
Q psy13922        471 GQVPGTYHFRTTIL---PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       471 ~~~~~~~~~Rls~~---~~~~~i~~~~~~l~~~~~~~~  505 (509)
                      ....+..++|+++.   +++++|++++++|++++++..
T Consensus       406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            00111238999998   789999999999999987643

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=8.4e-23  Score=212.06  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=130.5

Q ss_pred             CCCC--cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----H
Q psy13922         49 YTDS--PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----A  122 (509)
Q Consensus        49 Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~  122 (509)
                      |+..  ....++++.++++++        .+++++|+|+++|+..+++++.++||    +|+++.|+|.+....+    +
T Consensus        50 y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~~~gd----~vi~~~~~~~~~~~~~~~~~~  117 (412)
T 2cb1_A           50 YARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALLRPGD----EVVAAKGLFGQTIGLFGQVLS  117 (412)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTC----EEEEETTCCHHHHHHHHHTTT
T ss_pred             cCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCchhHHHHHHHHHH
Confidence            6543  567889999998883        24899999999999999999988888    9999999999866654    4


Q ss_pred             hcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc
Q psy13922        123 EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD  202 (509)
Q Consensus       123 ~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~  202 (509)
                      ..|.+++.++.        |++.|++.+++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..
T Consensus       118 ~~g~~~~~~~~--------~~~~l~~~i~~-----~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~  181 (412)
T 2cb1_A          118 LMGVTVRYVDP--------EPEAVREALSA-----KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGA  181 (412)
T ss_dssp             TTTCEEEEECS--------SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGT
T ss_pred             HcCCEEEEECC--------CHHHHHHHhcc-----CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcc
Confidence            57999998864        38889888876     7999999999999999987   99999999999999999999987


Q ss_pred             ccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      +.+.    ..+.     +.+      ..+++.|+||.+ |.+|.|+|++++
T Consensus       182 ~~~~----~~~~-----~~~------~di~~~S~~K~~-~~~~~~~G~~~~  216 (412)
T 2cb1_A          182 AGAL----CRPL-----AWG------AHVVVESLTKWA-SGHGSVLGGAVL  216 (412)
T ss_dssp             TTTS----CCGG-----GGT------CSEEEEETTTTT-TCSSCCCCEEEE
T ss_pred             cccc----CCcc-----ccC------CeEEEECCcccc-cCCCCcEEEEEE
Confidence            6221    1111     111      256678999999 579999999874

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.92  E-value=6.9e-23  Score=211.28  Aligned_cols=202  Identities=14%  Similarity=0.203  Sum_probs=151.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcc--hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-h
Q psy13922         21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPG--IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-I   97 (509)
Q Consensus        21 ~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g--~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~   97 (509)
                      ++.|.+++.+++++.+.+..   +    |.+..|  ..++|++++++++        .++|++|+|+++++..+++++ .
T Consensus         5 ~~~p~~~~~v~~a~~~~~~~---~----~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~   69 (394)
T 1o69_A            5 LSPPHMGGNELKYIEEVFKS---N----YIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGV   69 (394)
T ss_dssp             -------CCHHHHHHHHHHH---T----TTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHHHHHHc---C----CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC
Confidence            46788889999999998876   2    555556  7899999999983        268999999999999999999 8


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++||    .|+++.|+|.++...++..|++++.++.++  +|.+|++.|++.+++..  .++++|++++   |+|...  
T Consensus        70 ~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~--~~~~~v~~~~---~~G~~~--  136 (394)
T 1o69_A           70 KQDD----IVLASSFTFIASVAPICYLKAKPVFIDCDE--TYNIDVDLLKLAIKECE--KKPKALILTH---LYGNAA--  136 (394)
T ss_dssp             CTTC----EEEEESSSCGGGTHHHHHTTCEEEEECBCT--TSSBCHHHHHHHHHHCS--SCCCEEEEEC---GGGCCC--
T ss_pred             CCCC----EEEECCCccHHHHHHHHHcCCEEEEEEeCC--CCCcCHHHHHHHHhccc--CCceEEEEEC---CCCChh--
Confidence            8888    999999999999999999999999999873  46899999999997521  1488888875   899764  


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCC-cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQ-DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                       ++++|.++|+++|+++|+|++|. ++.+.+. ...++             . -+.+.|+||.. +++|.|+||+++  .
T Consensus       137 -~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~~~-------------~-~~~~~s~s~~K-~l~~~~~G~~~~--~  197 (394)
T 1o69_A          137 -KMDEIVEICKENDIVLIEDAAEALGSFYKNK-ALGTF-------------G-EFGVYSYNGNK-IITTSGGGMLIG--K  197 (394)
T ss_dssp             -CHHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETTSS-------------S-SEEEEECCTTS-SSCCSSCEEEEE--S
T ss_pred             -hHHHHHHHHHHcCCEEEEECcCcccceeCCc-ccccc-------------c-CcEEEEEeCCc-cCCCCCceEEEE--C
Confidence             49999999999999999999998 4544321 11010             0 12344664333 345679999983  3


Q ss_pred             CHHHHHHHHHhhh
Q psy13922        257 DPGVKAMLHKSIS  269 (509)
Q Consensus       257 ~~~~~~~l~~~~~  269 (509)
                      ++++++.+.....
T Consensus       198 ~~~l~~~l~~~~~  210 (394)
T 1o69_A          198 NKEKIEKARFYST  210 (394)
T ss_dssp             CHHHHHHHHHHTB
T ss_pred             CHHHHHHHHHHHH
Confidence            6899998887644

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.92  E-value=2.5e-24  Score=224.93  Aligned_cols=198  Identities=12%  Similarity=0.067  Sum_probs=136.3

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH---hhcCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL---LIEDVDG  102 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~gd~  102 (509)
                      -|+.+++++.+++.+   .....|. .....++++.+++++    +   ..++|++|+|+++|+..+++.   +.+ ++ 
T Consensus        73 ~~~~v~~a~~~~~~~---~~~~~~~-~~~~~~l~~~la~~~----~---~~~~v~~~~sgseA~~~al~~ar~~~~-~~-  139 (434)
T 2epj_A           73 KHPRVLEAVEEALAR---GWLYGAP-GEAEVLLAEKILGYV----K---RGGMIRFVNSGTEATMTAIRLARGYTG-RD-  139 (434)
T ss_dssp             TCHHHHHHHHHHHHT---CSCCSSC-CHHHHHHHHHHHHHH----C---TTCEEEEESSHHHHHHHHHHHHHHHHC-CC-
T ss_pred             CCHHHHHHHHHHHHh---CCCCCCC-CHHHHHHHHHHHHhC----C---CCCEEEEeCCHHHHHHHHHHHHHHhhC-CC-
Confidence            378999999999987   2222242 222244555555544    3   468999999999999999988   443 34 


Q ss_pred             CCCeEEEcCCCChhHHHHHH--------------hcCC------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEE
Q psy13922        103 KKPGVLIPIPQYPLYSASLA--------------EFNM------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAI  162 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~--------------~~g~------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~i  162 (509)
                         .|++..|+|+++...+.              ..|.      +++.++.       .|++.|++.+++...  ++++|
T Consensus       140 ---~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~--~~~~v  207 (434)
T 2epj_A          140 ---LILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAEYGD--RIAGV  207 (434)
T ss_dssp             ---EEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHHHGG--GEEEE
T ss_pred             ---eEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHhCCC--CEEEE
Confidence               89999999987644321              1132      2444442       289999999975211  46776


Q ss_pred             EEeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +++..+|+||.++ +++++++|.++|++||+++|+||+|.+| ..+  ........  +..+     +   +.|+||.+ 
T Consensus       208 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g--~~~~~~~~--~~~~-----d---i~s~sK~l-  273 (434)
T 2epj_A          208 IVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLG--LEGAQGYF--NIEG-----D---IIVLGKII-  273 (434)
T ss_dssp             EECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSS--TTHHHHHH--TCCC-----S---EEEEEGGG-
T ss_pred             EEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCC--cchhhHHh--CCCC-----C---eeeecchh-
Confidence            6665567899865 7999999999999999999999999987 332  11111111  1111     1   34889999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      | +|+|+||++   .++++++.+..
T Consensus       274 ~-~G~~~G~v~---~~~~~~~~l~~  294 (434)
T 2epj_A          274 G-GGFPVGAVA---GSREVMSLLTP  294 (434)
T ss_dssp             G-TTSSCEEEE---ECHHHHTTBTT
T ss_pred             c-CCcceeeee---ecHHHHHhhcc
Confidence            5 599999998   68888887754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.92  E-value=1.3e-23  Score=216.88  Aligned_cols=338  Identities=11%  Similarity=0.054  Sum_probs=200.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE-eCCHHHHHHHHHHHhhcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL-SAGASDGIKSVLKLLIEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~g  100 (509)
                      +++.+|+.+++++.+..... .+... +.+  ...++.+++.+.+.+.+|.+ ++++|++ |+|++++++.+++++.++|
T Consensus        47 ~~~~~~~~v~~a~~~~~~~~-~~~~~-~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~~~l~~~g  121 (398)
T 2fyf_A           47 GPSKVRLEQLQTLTTTAAAL-FGTSH-RQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAAFGLIDKR  121 (398)
T ss_dssp             SSCCCCHHHHHGGGTTTTTT-TTSCT-TSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHHHHTCSSC
T ss_pred             CCCCCCHHHHHHHhhcCCCc-cCcCc-CCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHHHHhcCCC
Confidence            55567888888886531110 01112 222  11233444444444444644 3568998 9999999999999998764


Q ss_pred             CCCCCeEEEcCCCChh-HHHHHHhc--CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        101 DGKKPGVLIPIPQYPL-YSASLAEF--NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~-~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                           .+++..+.|.. ....+...  |.+++.++.+.  ++..+.+     +..     ++++|++++|+||||.+++.
T Consensus       122 -----v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--g~~~~~~-----i~~-----~~~~v~~~~~~nptG~~~~~  184 (398)
T 2fyf_A          122 -----SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP--GSAPEPQ-----TDP-----SVDVIAWAHNETSTGVAVAV  184 (398)
T ss_dssp             -----EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT--TCCCCCC-----CCT-----TCSEEEEESEETTTTEECCC
T ss_pred             -----eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC--CCCCCcc-----ccC-----CCCEEEEeCcCCCcceecch
Confidence                 23444433321 12234555  88888888762  2333321     233     79999999999999999997


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++.++      +|+++|+|++|..+...     ..+.    +       . .+++.|+||.+ |++| ++||++   .+
T Consensus       185 ~~i~~~------~~~~vivD~a~~~~~~~-----~~~~----~-------~-di~~~s~sK~~-~~~g-g~g~l~---~~  236 (398)
T 2fyf_A          185 RRPEGS------DDALVVIDATSGAGGLP-----VDIA----E-------T-DAYYFAPQKNF-ASDG-GLWLAI---MS  236 (398)
T ss_dssp             CCCTTC------C-CEEEEECTTTTTTSC-----CCGG----G-------C-SEEEECTTSTT-CSCS-SEEEEE---EC
T ss_pred             HHhhhh------cCCeEEEEeccccCCcc-----cCcc----c-------C-cEEEEecCccc-CCCC-ceEEEE---EC
Confidence            666664      89999999999875421     1111    1       1 34567999999 6775 689988   68


Q ss_pred             HHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        258 PGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       258 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      +++++.+.+.... ...++.......             .+........++....++.++..++          +...++
T Consensus       237 ~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~t~~~~~~~a~~~al----------~~~~~~  293 (398)
T 2fyf_A          237 PAALSRIEAIAATGRWVPDFLSLPIA-------------VENSLKNQTYNTPAIATLALLAEQI----------DWLVGN  293 (398)
T ss_dssp             HHHHHHHHHHHHTTCCCCGGGCHHHH-------------HHHHTTTCCSSCCCHHHHHHHHHHH----------HHHHHH
T ss_pred             HHHHHHhhcccccCCCCCcEEehHHH-------------hhhcccCCCCCCCCHHHHHHHHHHH----------HHHHHc
Confidence            8888887653210 000000000000             0000000000000111233333332          112222


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhcCCCCeecc--C--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        337 --KQSVLDSLKQRAKMVADTFNSIEGMSCNP--V--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       337 --~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                        ++++++.++++++.+.+.|+++||+++..  +  .+++++|++++  .         ++ +..++. +.|.++||.++
T Consensus       294 g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~--~---------~~-~~~~l~-~~L~~~gI~v~  360 (398)
T 2fyf_A          294 GGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV--D---------DV-DAGTVA-KILRANGIVDT  360 (398)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC--T---------TS-CHHHHH-HHHHHTTCBCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC--C---------CC-CHHHHH-HHHHHCCcEEe
Confidence              67788899999999999999988888763  4  45657886663  1         22 234444 44455599999


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPE  488 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~  488 (509)
                      +|.  ..                                                .+.+        ++|+|+.  ++++
T Consensus       361 ~g~--~~------------------------------------------------~~~~--------~iRis~~~~~t~e  382 (398)
T 2fyf_A          361 EPY--RK------------------------------------------------LGRN--------QLRVAMFPAVEPD  382 (398)
T ss_dssp             SCC--TT------------------------------------------------TCSS--------EEEEECCTTSCHH
T ss_pred             cCc--cc------------------------------------------------CCCC--------EEEEEecCCCCHH
Confidence            862  21                                                1122        8999998  6999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy13922        489 KLKAMLEKFREFHEE  503 (509)
Q Consensus       489 ~i~~~~~~l~~~~~~  503 (509)
                      ++++++++|++++++
T Consensus       383 ~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          383 DVSALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988753

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.92  E-value=5e-23  Score=212.75  Aligned_cols=172  Identities=20%  Similarity=0.248  Sum_probs=135.7

Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCC
Q psy13922         51 DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNM  126 (509)
Q Consensus        51 ~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~  126 (509)
                      +.....++++.+++++    |.    ++.++++++++++..+++++.++||    +|+++.|+|.++...+    ...|.
T Consensus        63 ~~~~~~~l~~~la~~~----g~----~~~i~~~sG~~a~~~~l~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~  130 (398)
T 1gc0_A           63 SNPTLNLLEARMASLE----GG----EAGLALASGMGAITSTLWTLLRPGD----EVLLGNTLYGCTFAFLHHGIGEFGV  130 (398)
T ss_dssp             CCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhcCCC----EEEEeCCCchhHHHHHHHHHHHcCC
Confidence            4456678888888887    31    2555566667999999999988888    9999999999987776    66799


Q ss_pred             EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccccc
Q psy13922        127 EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA  206 (509)
Q Consensus       127 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~  206 (509)
                      ++..++.+       |++.+++.+++     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+.+.
T Consensus       131 ~~~~~~~~-------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~  195 (398)
T 1gc0_A          131 KLRHVDMA-------DLQALEAAMTP-----ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ  195 (398)
T ss_dssp             EEEEECTT-------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred             EEEEECCC-------CHHHHHHhcCC-----CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccC
Confidence            99988753       78999998876     7999999999999999987   899999999999999999999876542


Q ss_pred             CCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHH-HHHHhhh
Q psy13922        207 EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKA-MLHKSIS  269 (509)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~-~l~~~~~  269 (509)
                      .     ++     ..+      ..+++.|+||.+ |.+|.|+ ||++   .++++++ .+.....
T Consensus       196 ~-----~~-----~~~------~d~~~~S~sK~~-~~~~~~~~G~l~---~~~~~~~~~~~~~~~  240 (398)
T 1gc0_A          196 R-----PL-----ELG------ADLVVHSATKYL-SGHGDITAGIVV---GSQALVDRIRLQGLK  240 (398)
T ss_dssp             C-----GG-----GGT------CSEEEEETTTTT-TCSSSCCCEEEE---ECHHHHHHHHHTHHH
T ss_pred             C-----ch-----hhC------ceEEEECCcccc-CCCCCCeEEEEE---EChHHHHHHHHHHhh
Confidence            1     11     111      146677999999 6799997 8887   5766655 5554443

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.92  E-value=2.1e-23  Score=216.07  Aligned_cols=177  Identities=18%  Similarity=0.215  Sum_probs=136.5

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----H
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----L  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~  121 (509)
                      +++|+ ..+..+++++++++++    .   .+.|++++| ++++..+++ ++++||    +|+++.|+|.+....    +
T Consensus        61 y~r~~-~p~~~~l~~~la~~~g----~---~~~i~~~sG-~~ai~~~~~-l~~~gd----~Vl~~~~~y~~~~~~~~~~~  126 (403)
T 3cog_A           61 YSRSG-NPTRNCLEKAVAALDG----A---KYCLAFASG-LAATVTITH-LLKAGD----QIICMDDVYGGTNRYFRQVA  126 (403)
T ss_dssp             ------CHHHHHHHHHHHHHHT----C---SEEEEESCH-HHHHHHHHT-TSCTTC----EEEEESSCCHHHHHHHHHTG
T ss_pred             ccCCC-CchHHHHHHHHHHHhC----C---CcEEEECCH-HHHHHHHHH-HhCCCC----EEEEeCCCcchHHHHHHHHH
Confidence            34454 3566899999999983    1   256666666 589999999 888888    999999999985554    3


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC-cEEEEcccC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK-LFLFADEVY  200 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~-i~lI~Deay  200 (509)
                      +..|.+++.++.+       |++.+++.+++     ++++|++++|+||||.+++   +++|+++|+++| +++|+|++|
T Consensus       127 ~~~G~~v~~v~~~-------d~~~l~~~i~~-----~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~  191 (403)
T 3cog_A          127 SEFGLKISFVDCS-------KIKLLEAAITP-----ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTF  191 (403)
T ss_dssp             GGGTCEEEEECTT-------SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTT
T ss_pred             HHcCCEEEEECCC-------CHHHHHHhcCc-----CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCC
Confidence            5679999998864       78999998876     7999999999999999997   899999999999 999999999


Q ss_pred             CcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      ..+.+..     ++.     .+      ..++++|+||.++|..|+|+||++.  .++++++.+.....
T Consensus       192 ~~~~~~~-----~~~-----~~------~div~~S~sK~~~g~~~~~~G~v~~--~~~~l~~~l~~~~~  242 (403)
T 3cog_A          192 MSPYFQR-----PLA-----LG------ADISMYSATKYMNGHSDVVMGLVSV--NCESLHNRLRFLQN  242 (403)
T ss_dssp             TCTTTCC-----TTT-----TT------CSEEEEETTTTTTCSSCCCCEEEEE--CCHHHHHHHHHHHH
T ss_pred             cccccCC-----ccc-----cC------CeEEEEcChhhccCCCCCeEEEEEE--CcHHHHHHHHHHHH
Confidence            9865421     110     11      2577889999994433468999973  46899998877655

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.92  E-value=1.3e-23  Score=211.07  Aligned_cols=167  Identities=16%  Similarity=0.193  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEEEEe
Q psy13922         57 IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQIGYY  132 (509)
Q Consensus        57 ~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~~v~  132 (509)
                      ++++.++++++      .+ +.+++++| ++++..+++++.++||    .|+++.|+|.++...+    +..|.+++.++
T Consensus         2 ~l~~~la~~~g------~~-~~i~~~sG-~~a~~~~~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   69 (331)
T 1pff_A            2 ALEGKIAKLEH------AE-ACAATASG-MGAIAASVWTFLKAGD----HLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             hHHHHHHHHhC------CC-eEEEeCCh-HHHHHHHHHHhcCCCC----EEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence            58899999883      22 44555555 8999999999988888    9999999999987765    45799999887


Q ss_pred             cCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH-CCcEEEEcccCCcccccCCCcc
Q psy13922        133 LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR-EKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       133 ~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~-~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      .       .|++.+++.+++     ++++|++++|+||||.+++   +++|.++|++ +|+++|+|++|..+.+.     
T Consensus        70 ~-------~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~-----  129 (331)
T 1pff_A           70 M-------AVPGNIEKHLKP-----NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT-----  129 (331)
T ss_dssp             T-------TSTTHHHHTCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-----
T ss_pred             C-------CCHHHHHHhhcC-----CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC-----
Confidence            5       378889888875     7999999999999999997   8999999999 99999999999875542     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe-eEEEeeecCCH-HHHHHHHHhhhc
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR-GGYSEVINLDP-GVKAMLHKSISA  270 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr-~G~v~~~~~~~-~~~~~l~~~~~~  270 (509)
                      .++     +.      ...++++|+||.+ |.+|.| +||++   .++ ++++.+......
T Consensus       130 ~~~-----~~------~~d~~~~s~~K~~-~~~~~r~~G~~~---~~~~~~~~~l~~~~~~  175 (331)
T 1pff_A          130 NPL-----DL------GVDIVVHSATKYI-NGHTDVVAGLVC---SRADIIAKVKSQGIKD  175 (331)
T ss_dssp             CGG-----GG------TCSEEEEETTTTT-SSSSSCCCEEEE---ECHHHHHHHHHTCCCC
T ss_pred             Chh-----hc------CCcEEEEECcccc-CCCCCceEEEEE---eCcHHHHHHHHHHHHh
Confidence            111     11      1256788999999 679999 89998   576 898888775543

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.91  E-value=3.6e-22  Score=208.88  Aligned_cols=170  Identities=12%  Similarity=0.172  Sum_probs=133.7

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEE
Q psy13922         53 PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQ  128 (509)
Q Consensus        53 ~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~  128 (509)
                      ....++++.+++++    |.   .+.|++++|+ ++++.++++++++||    +|+++.|.|.++...    ++..|+++
T Consensus       114 ~~~~~l~~~lA~l~----g~---~~~v~~~sG~-~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v  181 (445)
T 1qgn_A          114 PTTVVLEEKISALE----GA---ESTLLMASGM-CASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETILPKMGITA  181 (445)
T ss_dssp             HHHHHHHHHHHHHH----TC---SEEEEESCHH-HHHHHHHHHHSCSSC----EEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred             hHHHHHHHHHHHHh----CC---CcEEEeCCHH-HHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHHHHHcCCEE
Confidence            34468899999887    32   2455555555 999999999999888    999999999987764    45679999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHhhhccCCc-eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        129 IGYYLDESKQWGLPISELERSITEARKHCNP-RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       129 ~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~-~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      +.++.+       |++.|++++++     ++ ++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...... 
T Consensus       182 ~~v~~~-------d~~~l~~ai~~-----~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~-  245 (445)
T 1qgn_A          182 TVIDPA-------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ-  245 (445)
T ss_dssp             EEECSS-------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-
T ss_pred             EEeCCC-------CHHHHHHHhcc-----CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-
Confidence            998753       79999999987     68 99999999999999987   889999999999999999999864321 


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                          .+.     +.+      ..++++|+||.+ |..| +++||++   .++++++.+.....
T Consensus       246 ----~~~-----~~g------~Div~~S~sK~~-gg~gd~~~G~l~---~~~~l~~~l~~~~~  289 (445)
T 1qgn_A          246 ----KAL-----ALG------ADLVLHSATKFL-GGHNDVLAGCIS---GPLKLVSEIRNLHH  289 (445)
T ss_dssp             ----CTT-----TTT------CSEEEECTTTTT-TCSSSCCCEEEE---ECHHHHHHHHHHHH
T ss_pred             ----Ccc-----ccC------CEEEEECCcccc-cccccceEEEEE---ECHHHHHHHHHHHH
Confidence                111     111      146678999999 4344 5799998   68889888876554

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.91  E-value=4.4e-23  Score=218.73  Aligned_cols=364  Identities=12%  Similarity=0.045  Sum_probs=224.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCC-------CCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD-------WQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |..+.+.+..++..   ... .|....+..++++.+++++.+.+|.+..       ..++++|+|+|+|+..++.++...
T Consensus        87 ~~~~~~~~~~~~n~---~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~  162 (486)
T 1js3_A           87 PAMLADMLCGAIGC---IGF-SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (486)
T ss_dssp             HHHHHHHHHHHHCC---CCS-SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc---Ccc-ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence            34566666666643   333 3777777889999999999998886632       357899999999999988776432


Q ss_pred             ---------CCC------CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEE
Q psy13922        100 ---------VDG------KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIV  163 (509)
Q Consensus       100 ---------gd~------~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~iv  163 (509)
                               ||-      .+..|+++.+.|.++...++..|++++.+|.++  ++.+|++.|++++++..+. ..+.+|+
T Consensus       163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~--~~~~d~~~L~~~i~~~~~~g~~p~~vv  240 (486)
T 1js3_A          163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVV  240 (486)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCC--CCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence                     210      011378899999999999999999999999863  5789999999999874211 1134788


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        164 IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       164 i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      +++|+||||.+   +++++|+++|++||+++++|++|+.+.+... .+....   ..+    ...+++++ +++|.+ +.
T Consensus       241 ~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~-~~~~~~---~g~----~~adsi~~-~~hK~~-~~  307 (486)
T 1js3_A          241 ATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHLL---NGV----EFADSFNF-NPHKWL-LV  307 (486)
T ss_dssp             EEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGGG---TTG----GGCSEEEE-CHHHHS-SC
T ss_pred             EeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH-HHHHHh---cCc----cccCeeEE-chhhhc-CC
Confidence            89999999988   4599999999999999999999988654321 111110   011    02236654 889998 55


Q ss_pred             CCCeeEEEeeecCCHHH-HHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCC
Q psy13922        244 CGLRGGYSEVINLDPGV-KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP  322 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~  322 (509)
                      | .++|++++  .++.. .+.+.... .+............... +  |          .+..+.+.  ...++..++. 
T Consensus       308 p-~~~G~l~~--~~~~~l~~~~~~~~-~yl~~~~~~~~~~~~~~-~--~----------~~~~~rr~--~~~~~~~al~-  367 (486)
T 1js3_A          308 N-FDCSAMWV--KRRTDLTGAFKLDP-VYLKHSHQGSGLITDYR-H--W----------QLPLGRRF--RSLKMWFVFR-  367 (486)
T ss_dssp             C-SSCEEEEE--SCHHHHHGGGC-------------CCSCCCGG-G--S----------SSCSCCCC--THHHHHHHHH-
T ss_pred             C-cceEEEEE--eCHHHHHHHhcCCc-hhhCCCcccccCCCCcc-c--c----------CCCCCCch--hHHHHHHHHH-
Confidence            4 89999985  66664 34331100 00000000000000000 0  0          00000000  0011111110 


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                              ....++++++.+...++++++.+.|+++|++++. ++..+++.| .+.-...           ....+... 
T Consensus       368 --------~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~-----------~~~~l~~~-  426 (486)
T 1js3_A          368 --------MYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSDG-----------LNEALLER-  426 (486)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCHH-----------HHHHHHHH-
T ss_pred             --------HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecChHH-----------HHHHHHHH-
Confidence                    0112347788888999999999999999899886 466666655 3321110           02333344 


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |.+.|+.+.++..+                                                  .+        ..++|+
T Consensus       427 L~~~g~~~~~~~~~--------------------------------------------------~~--------~~~lRi  448 (486)
T 1js3_A          427 INSARKIHLVPCRL--------------------------------------------------RG--------QFVLRF  448 (486)
T ss_dssp             HHHHTSCBCEEEEE--------------------------------------------------TT--------EEEEEE
T ss_pred             HHhcCCEEEEEEEE--------------------------------------------------CC--------EEEEEE
Confidence            44456543321111                                                  11        228999


Q ss_pred             Eee---cChHHHHHHHHHHHHHHHHHHhhc
Q psy13922        482 TIL---PQPEKLKAMLEKFREFHEEFLAKY  508 (509)
Q Consensus       482 s~~---~~~~~i~~~~~~l~~~~~~~~~~~  508 (509)
                      +++   ++.++|++++++|+++++++.+++
T Consensus       449 ~~~~~~~t~~di~~~~~~l~~~~~~~~~~~  478 (486)
T 1js3_A          449 AICSRKVESGHVRLAWEHIRGLAAELLAAE  478 (486)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            986   478999999999999998876654

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.91  E-value=3.2e-23  Score=213.94  Aligned_cols=170  Identities=18%  Similarity=0.114  Sum_probs=134.9

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HHHhcCCE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SLAEFNME  127 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~  127 (509)
                      ..+..++|+.++++++      .  ++++++++++++++.+++ +.++||    +|+++.|+|.+...    .++..|++
T Consensus        54 ~~~~~~lr~~la~~~g------~--~~~i~~~sGt~a~~~al~-~~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~  120 (393)
T 1n8p_A           54 NPNRENLERAVAALEN------A--QYGLAFSSGSATTATILQ-SLPQGS----HAVSIGDVYGGTHRYFTKVANAHGVE  120 (393)
T ss_dssp             CHHHHHHHHHHHHHTT------C--SEEEEESCHHHHHHHHHH-TSCSSC----EEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred             ChhHHHHHHHHHHHhC------C--CcEEEECChHHHHHHHHH-HcCCCC----EEEEeCCCchHHHHHHHHHHHHcCcE
Confidence            3456889999999983      1  245556666899999999 888888    99999999986554    34567999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC----CcEEEEcccCCcc
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE----KLFLFADEVYQDN  203 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~----~i~lI~Deay~~~  203 (509)
                      ++.++.+       | +.|++++++     ++++|++++|+||||.+++   +++|+++|+++    |+++|+|++|..+
T Consensus       121 v~~v~~~-------d-~~l~~~i~~-----~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~  184 (393)
T 1n8p_A          121 TSFTNDL-------L-NDLPQLIKE-----NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSP  184 (393)
T ss_dssp             CEEESSH-------H-HHHHHHSCS-----SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred             EEEeCCC-------h-HHHHHhccc-----CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccc
Confidence            9988764       6 788888765     7999999999999999997   89999999999    9999999999987


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCHHHHHHHHHhhh
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .+.   ...   .    .+      ..++++|+||.+ |.+|+|+ ||++.  .++++++.+.....
T Consensus       185 ~~~---~~~---~----~~------~di~~~S~sK~~-g~~G~rigG~~~~--~~~~~~~~l~~~~~  232 (393)
T 1n8p_A          185 YIS---NPL---N----FG------ADIVVHSATKYI-NGHSDVVLGVLAT--NNKPLYERLQFLQN  232 (393)
T ss_dssp             HHC---CGG---G----GT------CSEEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHH
T ss_pred             ccC---CHH---H----cC------CeEEEEECcccc-cCCCCceeEEEEe--CCHHHHHHHHHHHH
Confidence            652   111   1    11      256788999999 7899999 98872  36889888876644

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.91  E-value=7e-24  Score=220.83  Aligned_cols=195  Identities=14%  Similarity=0.079  Sum_probs=133.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH---hhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL---LIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~gd~~  103 (509)
                      |+.+++++.++++.   .....|.     .++++++++.+.+.++   .+++|++|+|+++|+..+++.   +.++ +  
T Consensus        70 ~p~v~~a~~~~~~~---~~~~~~~-----~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~~~-~--  135 (424)
T 2e7u_A           70 HPKVLARVRETLER---GLTFGAP-----SPLEVALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYTGR-P--  135 (424)
T ss_dssp             CHHHHHHHHHHHHT---CSCCSSC-----CHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHHCC-C--
T ss_pred             CHHHHHHHHHHHHh---CCCCCCC-----CHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCC-C--
Confidence            78999999999987   2222232     3455555555555543   468999999999999999986   5543 4  


Q ss_pred             CCeEEEcCCCChhHHHHHHh--------------cCC------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE
Q psy13922        104 KPGVLIPIPQYPLYSASLAE--------------FNM------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~--------------~g~------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                        .|++..|+|+++...+..              .|.      +++.++.       .|++.|++.+++..+  ++++|+
T Consensus       136 --~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~--~~~~vi  204 (424)
T 2e7u_A          136 --YIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKRRGE--EIAAII  204 (424)
T ss_dssp             --EEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHGG--GEEEEE
T ss_pred             --EEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHhCCC--CEEEEE
Confidence              899999999986543321              121      2344432       389999999974211  455555


Q ss_pred             EeCCCCC-CCCCC-CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        164 IINPGNP-TGQVL-TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       164 i~~p~NP-tG~~~-s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      + +|+|+ ||.++ +++++++|.++ ++||++||+||+|.+| ..+  ..... +.. ...+     ++   .|+||.+ 
T Consensus       205 ~-ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g--~~~~~-~~~-~~~~-----di---~s~sK~l-  268 (424)
T 2e7u_A          205 F-EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLA--FGGAT-ELL-GLKP-----DL---VTLGKIL-  268 (424)
T ss_dssp             E-CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSS--TTHHH-HHH-TCCC-----SE---EEECGGG-
T ss_pred             E-eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccc--hhHHH-HHh-CCCc-----ch---hhhhhhh-
Confidence            4 56554 89755 79999999999 9999999999999988 432  11111 111 1111     23   3889999 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      | +|+|+||++   .++++++.+..
T Consensus       269 ~-~G~~~G~~~---~~~~~~~~~~~  289 (424)
T 2e7u_A          269 G-GGLPAAAYA---GRREIMEKVAP  289 (424)
T ss_dssp             G-TTSSCEEEE---ECHHHHTTBTT
T ss_pred             h-CCcceEEEE---EcHHHHhhhcc
Confidence            6 699999998   68888887765

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.91  E-value=7e-23  Score=209.03  Aligned_cols=198  Identities=20%  Similarity=0.242  Sum_probs=156.7

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCCCC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDVDG  102 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~  102 (509)
                      |.+++.+++++.+.+..   .   .|.+..+..++++.++++++        .+++++|+|+++|+..++..+ .++|| 
T Consensus        12 ~~~~~~v~~a~~~~~~~---~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd-   76 (367)
T 3nyt_A           12 ARIKDKIDAGIQRVLRH---G---QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGD-   76 (367)
T ss_dssp             HHHHHHHHHHHHHHHHH---C---CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTC-
T ss_pred             cccCHHHHHHHHHHHhc---C---CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcC-
Confidence            34567788888888776   2   25567788999999999983        248999999999999999999 78888 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                         .|+++.|+|..+...++..|++++.++.+++ ++.+|++.|++.+++     ++++|+   |+||+|...+   +++
T Consensus        77 ---~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~-----~~~~v~---~~~~~G~~~~---~~~  141 (367)
T 3nyt_A           77 ---EVITPGFTYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITP-----RTKAII---PVSLYGQCAD---FDA  141 (367)
T ss_dssp             ---EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCT-----TEEEEC---CBCGGGCCCC---HHH
T ss_pred             ---EEEECCCccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCc-----CCcEEE---eeCCccChhh---HHH
Confidence               9999999999999999999999999998765 478899999998866     788887   8889998765   889


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCCHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      |.++|+++|+++|+|++|+......+.....       .      . .+++.||  +|.+ |.+|. +|+++.  .++++
T Consensus       142 i~~la~~~~~~li~D~a~~~g~~~~~~~~~~-------~------~-di~~~Sf~~~K~l-~~~g~-gg~~~~--~~~~l  203 (367)
T 3nyt_A          142 INAIASKYGIPVIEDAAQSFGASYKGKRSCN-------L------S-TVACTSFFPSAPL-GCYGD-GGAIFT--NDDEL  203 (367)
T ss_dssp             HHHHHHHTTCCBEEECTTTTTCEETTEETTS-------S------S-SEEEEECCTTSSS-CCSSC-CEEEEE--SCHHH
T ss_pred             HHHHHHHcCCEEEEECccccCCeECCeeccC-------C------C-CEEEEECCCCCcC-CCcCc-eeEEEe--CCHHH
Confidence            9999999999999999998643221111110       0      0 2445686  8999 65586 888863  67899


Q ss_pred             HHHHHHhhh
Q psy13922        261 KAMLHKSIS  269 (509)
Q Consensus       261 ~~~l~~~~~  269 (509)
                      .+.+.....
T Consensus       204 ~~~~~~~~~  212 (367)
T 3nyt_A          204 ATAIRQIAR  212 (367)
T ss_dssp             HHHHHHHTB
T ss_pred             HHHHHHHHh
Confidence            988877654

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.91  E-value=1.2e-23  Score=219.30  Aligned_cols=204  Identities=11%  Similarity=0.004  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--CCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--DVDGKK  104 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~~~  104 (509)
                      ||.+++++.+++.+   .....|+ .....++++.+++++    +   ..++|++|+|++++++.+++....  ..+   
T Consensus        71 ~p~v~~A~~~~~~~---~~~~~~~-~~~~~~la~~l~~~~----~---~~~~v~~~~sGsea~~~al~~a~~~~~~~---  136 (429)
T 4e77_A           71 HPAIRQAVIEAVER---GLSFGAP-TEMEVKMAQLVTDLV----P---TMDMVRMVNSGTEATMSAIRLARGYTGRD---  136 (429)
T ss_dssp             CHHHHHHHHHHHTT---CSCCSSC-CHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHHHHHHHHHHHHCCC---
T ss_pred             CHHHHHHHHHHHHh---CcccCCC-CHHHHHHHHHHHhhC----C---CCCEEEEeCcHHHHHHHHHHHHHHhhCCC---
Confidence            79999999999987   2223243 333355666666554    3   468999999999999999986543  333   


Q ss_pred             CeEEEcCCCChhHHHHHHh-cC--CEEEEEecCCCC---------CC-CCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922        105 PGVLIPIPQYPLYSASLAE-FN--MEQIGYYLDESK---------QW-GLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus       105 ~~Vlv~~p~y~~~~~~~~~-~g--~~~~~v~~~~~~---------~~-~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                       .|++..+.|+++...+.. .+  ......+....-         .+ ..|++.|++.+++..  .++++| +++|+|++
T Consensus       137 -~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~v-i~ep~~~~  212 (429)
T 4e77_A          137 -KIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYP--QEVACI-IVEPVAGN  212 (429)
T ss_dssp             -EEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHST--TTEEEE-EECSSBCT
T ss_pred             -EEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcC--CCEEEE-EECCccCC
Confidence             899999999987653221 11  111111111000         00 128999999998521  134444 45565555


Q ss_pred             C-C-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeE
Q psy13922        172 G-Q-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG  249 (509)
Q Consensus       172 G-~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G  249 (509)
                      | . ..+++.+++|.++|++||+++|+||+|.+| ..+.  .......  +..+     +   +.|+||.+ | +|+|+|
T Consensus       213 ~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~--~~~~~~~--~~~p-----d---i~t~sK~~-~-~G~~~G  277 (429)
T 4e77_A          213 MNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL--AGAQDYY--HVIP-----D---LTCLGKII-G-GGMPVG  277 (429)
T ss_dssp             TSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT--TCHHHHT--TCCC-----S---EEEEEGGG-G-TTSCCE
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc--chHHHhc--CCCC-----C---eeeecccc-c-CCCCeE
Confidence            4 4 344667999999999999999999999988 4432  2222211  1111     1   34889999 5 799999


Q ss_pred             EEeeecCCHHHHHHHHH
Q psy13922        250 YSEVINLDPGVKAMLHK  266 (509)
Q Consensus       250 ~v~~~~~~~~~~~~l~~  266 (509)
                      |++   +++++++.+..
T Consensus       278 ~~~---~~~~~~~~l~~  291 (429)
T 4e77_A          278 AFG---GRREVMNALAP  291 (429)
T ss_dssp             EEE---ECHHHHTTBTT
T ss_pred             EEE---ECHHHHHHhcc
Confidence            998   79999888765

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.91  E-value=2.6e-23  Score=213.34  Aligned_cols=321  Identities=12%  Similarity=0.110  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHH--HHHHhcC--CEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYS--ASLAEFN--MEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~--~~~~~~g--~~~~~v  131 (509)
                      .++.+++++.+.+.+|.+   +.|++|+|++++++.++..+ .+||    +|+++.+.|+++.  ..++..|  .+++.+
T Consensus        34 ~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~-~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~  105 (379)
T 3ke3_A           34 QEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL-TIDE----DCLIIRNGWFSYRWTQILEKGKFAKSSTVL  105 (379)
T ss_dssp             HHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH-CTTC----EEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC-CCCC----eEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence            456666666666665633   68999999999999988655 5777    9999999998753  3455555  477777


Q ss_pred             ecCCC------CCC-CCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        132 YLDES------KQW-GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       132 ~~~~~------~~~-~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      +.+..      ..| .+|++.+++.+++.    ++++|++++++||||.+++.+++++|.++|+++|+++|+|+++. . 
T Consensus       106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g-  179 (379)
T 3ke3_A          106 TAERTEDTEAPKPFAPVDIETAVAKIKED----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G-  179 (379)
T ss_dssp             ECEESSCCSSCCCEECCCHHHHHHHHHHH----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-
T ss_pred             eccccccccccCCCCCCCHHHHHHHHhhc----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-
Confidence            76431      111 47999999999653    79999999999999999999999999999999999999999986 2 


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccc
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQ  284 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  284 (509)
                         . ....+....         . .+++.|++|.+.  .+.++|+++   .++++++.+.............       
T Consensus       180 ---~-~~~~~~~~~---------~-d~~~~s~~K~l~--~~~g~g~~~---~~~~~~~~l~~~~~~~~~~~~~-------  233 (379)
T 3ke3_A          180 ---C-VWLDMKELG---------I-DVLISAPQKGWS--STPCAGLVM---LSAAAIKKVESTESNCFSLDLK-------  233 (379)
T ss_dssp             ---T-CCCCHHHHT---------C-SEEEECTTTTTC--SCCCEEEEE---ECHHHHHHHHTCCCSCSTTCHH-------
T ss_pred             ---C-ccccccccC---------C-CEEEecchhhcC--CCCceEEEE---ECHHHHHhhhcCCCCceeecHH-------
Confidence               1 223333221         1 244569999883  334588887   6889888876422100000000       


Q ss_pred             ccCCCCCchhHHHHHHHhhhcc------cCcccccchhhcccCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q psy13922        285 LFDDPRFPDDVKQRAQAVLDGC------RGQSVGQTVMDCVVNPPQPGEPSYEQFSRE-KQSVLDSLKQRAKMVADTFNS  357 (509)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~  357 (509)
                               ...+. ....+.+      +......+++..+++          ...+. ++.++++++++++++.+.|++
T Consensus       234 ---------~~~~~-~~~~~~g~~~~~~t~~~~~~~a~~aal~----------~~~~~g~~~~~~~~~~l~~~l~~~l~~  293 (379)
T 3ke3_A          234 ---------QWLTI-MRAYENGGHAYHATMPTDSLRQFRDAIL----------EAKEIGFDILRDAQWELGNRVRKVLTD  293 (379)
T ss_dssp             ---------HHHHH-HHHHHTTSCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------HHHHH-HHhhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence                     00000 0000000      111113334433322          12121 577888889999999999998


Q ss_pred             CCCCeeccCC---ceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhh
Q psy13922        358 IEGMSCNPVQ---GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYT  434 (509)
Q Consensus       358 ~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~  434 (509)
                      + |+++..+.   ++....+.++-+              +.. ....|.++||.+.+|..|.....              
T Consensus       294 ~-g~~~~~~~~~~~~~i~~~~~~~~--------------~~~-~~~~L~~~Gi~v~~g~~~~~~~~--------------  343 (379)
T 3ke3_A          294 K-GIESVAAEGFEAPGVVVSYTERD--------------DMH-KGSAFAEAGLQIAAGVPLKVGEP--------------  343 (379)
T ss_dssp             T-TCCBSBCTTCBCSSEEEEECSCH--------------HHH-SSHHHHHTTCCCEECCCCSSCCC--------------
T ss_pred             c-CCEecCCccccCceEEEEccCCc--------------chH-HHHHHHHCCeEEeCCcccccccc--------------
Confidence            8 88776443   333333222211              111 13556778999999886543000              


Q ss_pred             HHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHHH
Q psy13922        435 QRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~~  505 (509)
                                                     .+.+        ++|+|+.  +++++|++++++|+++++++.
T Consensus       344 -------------------------------~~~~--------~lRis~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          344 -------------------------------DNFK--------TFRLGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             -------------------------------TTCC--------EEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------CcCC--------EEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence                                           1122        8999987  899999999999999998765

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.91  E-value=2.2e-22  Score=214.25  Aligned_cols=355  Identities=10%  Similarity=0.019  Sum_probs=230.3

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEE---EeCCHHHHHHHHHHHhhcC-
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI---LSAGASDGIKSVLKLLIED-   99 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~---~t~G~~~al~~~~~~l~~~-   99 (509)
                      .+.++.+.+++.+++..   ... .|....+..++++.+.+++.+.+|.+..+++++   +|+|+++++.+++.++..+ 
T Consensus        66 ~~~~~~v~~~l~~~~~~---~~~-~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~  141 (502)
T 3hbx_A           66 TWMEPECDKLIMSSINK---NYV-DMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKW  141 (502)
T ss_dssp             CCCCHHHHHHHHHTTTC---BTT-CTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcc---CCC-ChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHH
Confidence            44578888888887766   222 244555678899999999988888765455543   5999999999998888654 


Q ss_pred             -------CCCC-CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922        100 -------VDGK-KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus       100 -------gd~~-~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                             |++. ++.|+++.++|..+...++..|++++.++.+++ ++.+|++.|++++++     ++++|++++|+|||
T Consensus       142 ~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~-----~t~~v~~~~~~n~t  215 (502)
T 3hbx_A          142 QNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPQQAVDMVDE-----NTICVAAILGSTLN  215 (502)
T ss_dssp             HHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTT-BCSCCHHHHHHHCCT-----TEEEEEEEBSCTTT
T ss_pred             hHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCC-cCcCCHHHHHHHHhh-----CCEEEEEecCCCCC
Confidence                   4311 237999999999999999999999999998753 478999999999987     79999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHC------CcEEEEcccCCcccc---cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        172 GQVLTKENIQDIIKFAHRE------KLFLFADEVYQDNVY---AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~------~i~lI~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      |.+.+   +++|.++|+++      |+++++|++|..+..   .+.... .+       .  ..+.+++.+ |.+|.+. 
T Consensus       216 G~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~-~~-------~--~~~~D~v~~-s~hK~l~-  280 (502)
T 3hbx_A          216 GEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DF-------R--LPLVKSINV-SGHKYGL-  280 (502)
T ss_dssp             CCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-ST-------T--STTEEEEEE-ETTTTTC-
T ss_pred             CcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc-cc-------C--CCCceEEEE-CcccccC-
Confidence            99976   88889999998      999999999987642   111110 00       0  013345544 8899873 


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccc-hhhcccC
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT-VMDCVVN  321 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~  321 (509)
                       ++.++||+++  .+++.+.........+......     ...+.-.+.   ..+.            .++. ++..+  
T Consensus       281 -~p~g~G~~~~--~~~~~l~~~~~~~~~yl~~~~~-----~~~~~~sr~---~~~~------------~a~~~al~~l--  335 (502)
T 3hbx_A          281 -VYAGIGWVIW--RNKEDLPEELIFHINYLGADQP-----TFTLNFSKG---SSQV------------IAQYYQLIRL--  335 (502)
T ss_dssp             -CCSSCEEEEE--SSGGGSCGGGCEEECSSSSCEE-----ECCSCCSCB---SHHH------------HHHHHHHHHH--
T ss_pred             -CCCCeEEEEE--eCHHHhhHHhccCcccccCCCC-----CccccCCch---HHHH------------HHHHHHHHHH--
Confidence             6778898875  6665442221111111111000     000000000   0000            0111 11111  


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHH
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAF  399 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  399 (509)
                                 ..+.+.+..+...++++++.+.|++++++++..+  ..+++ ++++.-..         ++ +... +.
T Consensus       336 -----------g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v-~f~~~~~~---------~~-~~~~-l~  392 (502)
T 3hbx_A          336 -----------GHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLV-AFSLKDSS---------CH-TEFE-IS  392 (502)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEE-EEEESSCS---------SC-CHHH-HH
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEE-EEEecCCC---------cC-CHHH-HH
Confidence                       1123567778888889999999999977888755  44444 43443100         11 1223 45


Q ss_pred             HHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeE
Q psy13922        400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHF  479 (509)
Q Consensus       400 ~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ..|.++||.+........                                                       ..+..++
T Consensus       393 ~~L~~~Gi~v~~~~~p~~-------------------------------------------------------~~~~~~l  417 (502)
T 3hbx_A          393 DMLRRYGWIVPAYTMPPN-------------------------------------------------------AQHITVL  417 (502)
T ss_dssp             HHHHTTTCBCCEEECCTT-------------------------------------------------------CTTCEEE
T ss_pred             HHHHhCCcEEeeccCCcc-------------------------------------------------------cCCceEE
Confidence            667778998753221111                                                       1122389


Q ss_pred             EEEee--cChHHHHHHHHHHHHHHHHHHh
Q psy13922        480 RTTIL--PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       480 Rls~~--~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      |+++.  .+.++++.+++.|+++++++.+
T Consensus       418 Risv~~~~t~edid~li~~L~~~l~~l~~  446 (502)
T 3hbx_A          418 RVVIREDFSRTLAERLVIDIEKVMRELDE  446 (502)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99988  6889999999999998877654

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.91  E-value=1.2e-23  Score=221.05  Aligned_cols=326  Identities=10%  Similarity=0.072  Sum_probs=201.1

Q ss_pred             CHHHH-H-HHHH---HHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh---c
Q psy13922         27 PDDVK-Q-RAQA---VLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI---E   98 (509)
Q Consensus        27 p~~v~-~-a~~~---~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~   98 (509)
                      ||.|+ + ++.+   ++..... ....|. .....++++.+++++    + ....++|++|+|+++|++.+++.+.   +
T Consensus        72 ~p~v~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~la~~la~~~----~-~~~~~~v~~~~~gseA~~~aik~a~~~~~  144 (449)
T 2cjg_A           72 PPALVDDREFHAELMQAALNKP-SNSDVY-SVAMARFVETFARVL----G-DPALPHLFFVEGGALAVENALKAAFDWKS  144 (449)
T ss_dssp             CHHHHTCHHHHHHHHHHHTCCC-CTTTCC-CHHHHHHHHHHHHHH----C-CTTCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCC-CCcccC-CHHHHHHHHHHHHhc----C-CCCCCEEEEeCchHHHHHHHHHHHHHHhc
Confidence            78999 8 9988   6665211 011232 222345555555555    3 2357899999999999999998654   2


Q ss_pred             -CC------CCCCCeEEEcCCCChhHHHHHHhc---------CC-----EEEEEecCCCCCC--------CCCHHHHHHH
Q psy13922         99 -DV------DGKKPGVLIPIPQYPLYSASLAEF---------NM-----EQIGYYLDESKQW--------GLPISELERS  149 (509)
Q Consensus        99 -~g------d~~~~~Vlv~~p~y~~~~~~~~~~---------g~-----~~~~v~~~~~~~~--------~~d~~~L~~~  149 (509)
                       ++      .++++.|++..|.|+++...+...         +.     .+..+|.++.+..        ..+++.|++.
T Consensus       145 ~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~  224 (449)
T 2cjg_A          145 RHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAA  224 (449)
T ss_dssp             HHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHH
Confidence             10      001339999999999865532221         22     4555554331000        1345668888


Q ss_pred             HHhhhccCCceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCc
Q psy13922        150 ITEARKHCNPRAIVIINPGNPTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM  228 (509)
Q Consensus       150 i~~~~~~~~~~~ivi~~p~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (509)
                      +++..  .++++|+++.++||+| ..++++++++|.++|++||+++|+||+|.++.+.+.  +.++...  ++..     
T Consensus       225 i~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~~~~~--~~~~-----  293 (449)
T 2cjg_A          225 FETRP--HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT--AWAYQQL--DVAP-----  293 (449)
T ss_dssp             HHHST--TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSTHHHH--TCCC-----
T ss_pred             HHhcC--CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc--ceeeccc--CCCc-----
Confidence            86311  1677877776689999 599999999999999999999999999998876542  2222221  1211     


Q ss_pred             eeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH-----hhh-cccCcchhhhhccccccCCCCCchhHHHHHHHh
Q psy13922        229 ELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK-----SIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAV  302 (509)
Q Consensus       229 ~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (509)
                      ++   .|+||.+      |+||++   .++++++.+..     ... .+.+.+.+                         
T Consensus       294 di---~t~sK~l------~iG~~~---~~~~~~~~l~~~~~~~~~~~~t~~~n~~-------------------------  336 (449)
T 2cjg_A          294 DI---VAFGKKT------QVCGVM---AGRRVDEVADNVFAVPSRLNSTWGGNLT-------------------------  336 (449)
T ss_dssp             SE---EEECGGG------SSEEEE---ECGGGGGSTTCTTTSTTSSCCSSSSCHH-------------------------
T ss_pred             eE---EEecCcc------cEEEEE---ECHHHhhhhhhcccCCcccccCCCCCHH-------------------------
Confidence            23   3789965      789998   57788775321     111 23344444                         


Q ss_pred             hhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC-CeeccCCceeEEeecCC
Q psy13922        303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS----IEG-MSCNPVQGAMYAFPQMK  377 (509)
Q Consensus       303 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g-~~~~~~~~g~~~~~~~~  377 (509)
                               ++++...+++          ...  -+.+.+.++++++++.+.|++    .|. +....+.|.++ ++++.
T Consensus       337 ---------~~~aa~aal~----------~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~-~~~~~  394 (449)
T 2cjg_A          337 ---------DMVRARRILE----------VIE--AEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMC-AFSLP  394 (449)
T ss_dssp             ---------HHHHHHHHHH----------HHH--HHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEE-EEECS
T ss_pred             ---------HHHHHHHHHH----------HHH--hccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEE-EEEEC
Confidence                     3333322221          111  123455666666777776664    344 55556666655 45664


Q ss_pred             CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhh
Q psy13922        378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESL  457 (509)
Q Consensus       378 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (509)
                      -..            ....++..++ ++||.+.|+.                                            
T Consensus       395 ~~~------------~~~~~~~~l~-~~Gv~v~~~g--------------------------------------------  417 (449)
T 2cjg_A          395 TTA------------DRDELIRQLW-QRAVIVLPAG--------------------------------------------  417 (449)
T ss_dssp             SHH------------HHHHHHHHHH-HTTEECEEET--------------------------------------------
T ss_pred             ChH------------HHHHHHHHHH-HCCeEEecCC--------------------------------------------
Confidence            211            1234445555 6799998742                                            


Q ss_pred             hcccccccCCCCCCCCCCceeEEEEe--ecChHHHHHHHHHHHHHHHHH
Q psy13922        458 ERTGICIVPGAGFGQVPGTYHFRTTI--LPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~Rls~--~~~~~~i~~~~~~l~~~~~~~  504 (509)
                              .+          ++|+++  +.++++|++++++|+++++++
T Consensus       418 --------~~----------~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          418 --------AD----------TVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             --------TT----------EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --------CC----------EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    12          899954  589999999999999998754

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.91  E-value=4.9e-22  Score=204.75  Aligned_cols=176  Identities=17%  Similarity=0.154  Sum_probs=140.8

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----H
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----L  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~  121 (509)
                      +++|+ .....++++.++++++        .+++++++++++++..+++++.++||    +|+++.|+|.++...    +
T Consensus        53 y~~~~-~~~~~~l~~~la~~~g--------~~~~i~~~sG~~ai~~~~~~~~~~gd----~vl~~~~~y~~~~~~~~~~~  119 (389)
T 3acz_A           53 YSRLG-NPTVEQFEEMVCSIEG--------AAGSAAFGSGMGAISSSTLAFLQKGD----HLIAGDTLYGCTVSLFTHWL  119 (389)
T ss_dssp             BTTTC-CHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHTTTCCTTC----EEEEESSCCHHHHHHHHHHH
T ss_pred             cCCCC-ChHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHH
Confidence            34343 4456789999999883        12666777778999999999988888    999999999987665    5


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                      +..|.+++.++.       .|++.+++.+++     ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|.
T Consensus       120 ~~~g~~~~~v~~-------~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~  184 (389)
T 3acz_A          120 PRFGIEVDLIDT-------SDVEKVKAAWKP-----NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFT  184 (389)
T ss_dssp             HHTTCEEEEECT-------TCHHHHHHTCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHcCCEEEEECC-------CCHHHHHHhcCC-----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCc
Confidence            778999999875       378999998876     7999999999999999987   8999999999999999999998


Q ss_pred             cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEEeeecCCH-HHHHHHHHhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYSEVINLDP-GVKAMLHKSIS  269 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v~~~~~~~-~~~~~l~~~~~  269 (509)
                      .+...     .++     +.+      ..++++|+||.+ |.+|.|+ ||++   .++ ++++.+.....
T Consensus       185 ~~~~~-----~~~-----~~~------~di~~~S~sK~~-~~~~~~~~G~v~---~~~~~~~~~l~~~~~  234 (389)
T 3acz_A          185 SPCFL-----KPL-----ELG------ADIALHSVSKYI-NGHGDVIGGVSS---AKTAEDIATIKFYRK  234 (389)
T ss_dssp             CTTTC-----CGG-----GTT------CSEEEEETTTTT-TCSSCCCCEEEE---ESSHHHHHHHHHHHH
T ss_pred             ccccc-----Ccc-----ccC------CeEEEECChhhc-cCCCCceeEEEE---ECcHHHHHHHHHHHH
Confidence            76532     111     111      256688999999 6799998 9997   455 88888877654

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.90  E-value=2.2e-22  Score=206.54  Aligned_cols=203  Identities=13%  Similarity=0.148  Sum_probs=156.2

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHH-HHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHV-AQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-   96 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~v-a~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-   96 (509)
                      ++.|+|  |+.+++++.+.+++   +.+..|++  ...++++++ +++++       ..+++++++|+++++..++..+ 
T Consensus         7 ~~~p~~~~~~~i~~a~~~~~~~---~~~~~~~~--~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~   74 (377)
T 3ju7_A            7 FLRASTVPVIEYLDELKEIDAS---HIYTNYGP--INQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKK   74 (377)
T ss_dssp             SCCCCCCCGGGGHHHHHHHHHH---TCCSSSCH--HHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHS
T ss_pred             ccCCCCCCcHHHHHHHHHHHHc---CCcccCCH--HHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcC
Confidence            467888  46789999999988   44433443  458899999 99883       2567999999999999999998 


Q ss_pred             hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCC--ceEEEEeCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN--PRAIVIINPGNPTGQV  174 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~--~~~ivi~~p~NPtG~~  174 (509)
                      .++||    +|+++.|+|..+...+...|++++.++++++ +|.+|++.+++++...    +  +++|+   |+||+|..
T Consensus        75 ~~~Gd----~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~----~~~tk~v~---~~~~~G~~  142 (377)
T 3ju7_A           75 RKKGK----YALMPSFTFPATPLAAIWCGLEPYFIDISID-DWYMDKTVLWDKIEEL----KEEVAIVV---PYATFGSW  142 (377)
T ss_dssp             CTTCC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHHHHH----GGGEEEEC---CBCGGGBC
T ss_pred             CCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHHHhcC----CCCceEEE---EECCCCCc
Confidence            88998    9999999999999999999999999998754 5789999999998432    5  88877   77899998


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEe
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSE  252 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~  252 (509)
                      .+   +++|.++|+ +|++||+|++|.......+   ..+       +..  .. -+.+.||  +|.+ | +| +.|+++
T Consensus       143 ~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~---~~~-------g~~--~~-d~~~~S~~~~K~l-~-~g-~gG~~~  202 (377)
T 3ju7_A          143 MN---LEEYEELEK-KGVPVVVDAAPGFGLMNGG---MHY-------GQD--FS-GMIIYSFHATKPF-G-IG-EGGLIY  202 (377)
T ss_dssp             CC---CHHHHHHHH-TTCCBEEECTTCTTCEETT---EET-------TTT--CS-SEEEEECBTTSSS-C-CB-SCEEEE
T ss_pred             cC---HHHHHHHHh-cCCEEEEECCCccCCeECC---Eec-------cCC--CC-cEEEEECCCCCcC-C-CC-CcEEEE
Confidence            77   788899999 9999999999986543211   110       000  00 1234454  6999 5 46 577775


Q ss_pred             eecCCHHHHHHHHHhhh
Q psy13922        253 VINLDPGVKAMLHKSIS  269 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~  269 (509)
                      +  .++++.++++.++.
T Consensus       203 ~--~~~~l~~~~~~~~~  217 (377)
T 3ju7_A          203 S--KNEEDIQRIKRMGN  217 (377)
T ss_dssp             E--SCHHHHHHHHHHTB
T ss_pred             E--CCHHHHHHHHHHHh
Confidence            4  78999998887765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.90  E-value=1.3e-21  Score=203.94  Aligned_cols=157  Identities=16%  Similarity=0.144  Sum_probs=125.2

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HHHhcCCE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SLAEFNME  127 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~  127 (509)
                      .....++++.++++++        .+..++++++++|+..++++++++||    +|+++.|+|.++..    .++..|.+
T Consensus        81 ~p~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~  148 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLARAGD----SVVTTDRLFGHTLSLFQKTLPSFGIE  148 (430)
T ss_dssp             CHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHHHHHcCCE
Confidence            3455788888888873        23466666778999999999999998    99999999998877    66788999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                      ++.++.+       |++.|++++++     ++++|++++|+||+|.+++   +++|+++|+++|+++|+|++|....+. 
T Consensus       149 ~~~v~~~-------d~~~l~~ai~~-----~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~-  212 (430)
T 3ri6_A          149 VRFVDVM-------DSLAVEHACDE-----TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL-  212 (430)
T ss_dssp             EEEECTT-------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC-
T ss_pred             EEEeCCC-------CHHHHHHhhCC-----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC-
Confidence            9998865       79999999876     7999999999999999987   889999999999999999999864431 


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                          .+.     +.+      ..++++|+||.+ |.+|..+|.++
T Consensus       213 ----~~~-----~~g------~div~~S~sK~l-~g~g~~~gG~v  241 (430)
T 3ri6_A          213 ----EAK-----RLG------VDIEVLSSTKFI-SGGGTSVGGVL  241 (430)
T ss_dssp             ----CGG-----GGT------CSEEEEECCCEE-ETTEEECCEEE
T ss_pred             ----ChH-----HcC------CEEEEECCcccc-cCCCCceEEEE
Confidence                111     111      146688999999 44666556555

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.90  E-value=1.5e-21  Score=207.86  Aligned_cols=283  Identities=13%  Similarity=0.040  Sum_probs=185.2

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--------CCCC-CCC-eEEEcCCCChhH
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--------DVDG-KKP-GVLIPIPQYPLY  117 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~gd~-~~~-~Vlv~~p~y~~~  117 (509)
                      .|....+..++++.+.+++.+.+|.+.+.+++++|+|+++++.+++.+++.        +|.. ..+ .|+++.+.|.++
T Consensus       123 ~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~  202 (504)
T 2okj_A          123 TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI  202 (504)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             chhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHH
Confidence            377667778889999888888888654478999999999999999998863        3400 012 688899999999


Q ss_pred             HHHHHhcCC---EEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcE
Q psy13922        118 SASLAEFNM---EQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF  193 (509)
Q Consensus       118 ~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~  193 (509)
                      ...++..|.   +++.+|.++  ++.+|++.|++.+++.... .++++|++++|+||||.+.+   +++|+++|+++|++
T Consensus       203 ~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g~~  277 (504)
T 2okj_A          203 KKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYNLW  277 (504)
T ss_dssp             HHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHTCE
T ss_pred             HHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCE
Confidence            999988877   899999864  4689999999999763221 24789999999999999865   89999999999999


Q ss_pred             EEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccC
Q psy13922        194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLC  273 (509)
Q Consensus       194 lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~  273 (509)
                      +++|++|+.+.+... .+...   ...+.    ..++++ .|++|.+ |.| .++|++++  .+++++.........+..
T Consensus       278 lhvD~a~~~~~~~~~-~~~~~---~~g~~----~~D~i~-~~~hK~~-~~p-~~~g~l~~--~~~~~~~~~~~~~~~~l~  344 (504)
T 2okj_A          278 LHVDAAWGGGLLMSR-KHRHK---LNGIE----RANSVT-WNPHKMM-GVL-LQCSAILV--KEKGILQGCNQMCAGYLF  344 (504)
T ss_dssp             EEEEETTGGGGGGCT-TTGGG---GTTGG----GCSEEE-ECTTSTT-CCC-SCCEEEEE--SSTTHHHHHHCCCCSSSC
T ss_pred             EEEehhhhhHHHhCH-hhHhh---cCCcc----cCCEEE-ECchhhc-CCC-cceEEEEE--ECHHHHHHHhcCCCcccc
Confidence            999999998775321 11111   11110    223554 4889999 544 68999985  565665543221111110


Q ss_pred             -cchhhhhccccccCCCCCchhHHHHHHHhhhcccC-cccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy13922        274 -PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG-QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMV  351 (509)
Q Consensus       274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  351 (509)
                       ..... ....      .+.++.       +..+.+ ....+.++-..          +.  .+.++++.+...++++++
T Consensus       345 ~~~~~~-~~~~------~~~~~~-------~~~~rr~~~l~~~a~l~~----------lg--~~g~~~~~~~~~~~a~~l  398 (504)
T 2okj_A          345 QPDKQY-DVSY------DTGDKA-------IQCGRHVDIFKFWLMWKA----------KG--TVGFENQINKCLELAEYL  398 (504)
T ss_dssp             CSCCSS-CGGG------CCGGGS-------SCSSCBCCHHHHHHHHHH----------HH--HHHHHHHHHHHHHHHHHH
T ss_pred             CCcccc-cCcC------CcccCC-------CCCCCCccHHHHHHHHHH----------hh--HHHHHHHHHHHHHHHHHH
Confidence             00000 0000      000000       000000 00011111111          11  233677888899999999


Q ss_pred             HHHHhcCCCCeecc---CCceeEEee
Q psy13922        352 ADTFNSIEGMSCNP---VQGAMYAFP  374 (509)
Q Consensus       352 ~~~L~~~~g~~~~~---~~~g~~~~~  374 (509)
                      .+.|+++|++++..   +..+++.|.
T Consensus       399 ~~~L~~~~~~~~~~~~~p~~~~v~f~  424 (504)
T 2okj_A          399 YAKIKNREEFEMVFNGEPEHTNVCFW  424 (504)
T ss_dssp             HHHHTTCTTEEESSSSCCSSSCEEEE
T ss_pred             HHHHhcCCCEEEEecCCCCeEEEEEE
Confidence            99999988998874   667776653

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.90  E-value=1.7e-21  Score=207.80  Aligned_cols=299  Identities=12%  Similarity=0.021  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC--------C
Q psy13922         29 DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED--------V  100 (509)
Q Consensus        29 ~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--------g  100 (509)
                      .+.+.+..++..   .. ..|....+..++++++++++.+.+|++...+.+++|+|+++++..++.++++.        |
T Consensus       111 ~~~e~l~~~~~~---~~-~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G  186 (511)
T 3vp6_A          111 LAGEWLTSTANT---NM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG  186 (511)
T ss_dssp             HHHHHHHHHHCC---CS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHC
T ss_pred             HHHHHHHHHhcc---CC-CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcC
Confidence            344555555544   33 34888888899999999999999997766789999999999999988887651        1


Q ss_pred             C--CCCCeEEEcCCCChhHHHHHHhcCC---EEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCC
Q psy13922        101 D--GKKPGVLIPIPQYPLYSASLAEFNM---EQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQV  174 (509)
Q Consensus       101 d--~~~~~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~  174 (509)
                      .  ..+..|+++.++|.++...++.+|.   +++.++.+++  +.+|++.|++.|++.... ..+++|+++.|+||+|.+
T Consensus       187 ~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~--~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v  264 (511)
T 3vp6_A          187 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNER--GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF  264 (511)
T ss_dssp             GGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTT--SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred             cccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCC--CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc
Confidence            0  0123899999999999999999998   8999998753  689999999999874221 237889999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      -   ++++|+++|++||+++++|++|+....... .+...   ....    ...+++++ +.+|.+ |.| ...|++++ 
T Consensus       265 d---~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~-~~~~~---~~g~----~~aDsv~~-~~hK~l-~~p-~g~g~l~~-  329 (511)
T 3vp6_A          265 D---PIQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHK---LNGI----ERANSVTW-NPHKMM-GVL-LQCSAILV-  329 (511)
T ss_dssp             C---CHHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGG---GTTG----GGCSEEEE-CTTSTT-CCC-SCCEEEEE-
T ss_pred             c---cHHHHHHHHHHcCCEEEEEccchhhHhhCh-hhhhh---ccCC----ccCCEEEE-Cccccc-CCC-cCeEEEEE-
Confidence            4   499999999999999999999988655321 11111   1100    01235654 899998 544 66788765 


Q ss_pred             cCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHH
Q psy13922        255 NLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFS  334 (509)
Q Consensus       255 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  334 (509)
                       .++.+..........+...........      ..+.+       ..+..+.+.  ....+..++.         ....
T Consensus       330 -~~~~~~~~~~~~~~~yl~~~~~~~~~~------~~~~~-------~~~~~~r~~--~al~~~~al~---------~~g~  384 (511)
T 3vp6_A          330 -KEKGILQGCNQMHASYLFQQDKHYDVS------YDTGD-------KAIQCGRHV--DIFKFWLMWK---------AKGT  384 (511)
T ss_dssp             -SSTTHHHHHHCCCCTTTCCSSCSSCGG------GCCGG-------GSSCSSCCC--CHHHHHHHHH---------HHHH
T ss_pred             -eCHHHHHHHhccCCccccCcccccccc------cCccC-------CCCCCCCch--HHHHHHHHHH---------HHhH
Confidence             777766554322111111000000000      00000       000000000  0011111111         0122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeecc---CCceeEEe
Q psy13922        335 REKQSVLDSLKQRAKMVADTFNSIEGMSCNP---VQGAMYAF  373 (509)
Q Consensus       335 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~---~~~g~~~~  373 (509)
                      ++++++.+...++.+++.+.|+++||+++..   +..+.+.|
T Consensus       385 ~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f  426 (511)
T 3vp6_A          385 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCF  426 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEE
Confidence            3578889999999999999999999999865   56666554

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.89  E-value=9.4e-22  Score=209.14  Aligned_cols=359  Identities=15%  Similarity=0.131  Sum_probs=223.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh----h
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL----I   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----~   97 (509)
                      ..+..|+.+++++......   .....|....+..++++++.+++.+.+|.+ ..+++++|+|+++++..++.++    .
T Consensus       108 ~~~~~~~~v~~~~~~~~~n---~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~  183 (497)
T 2qma_A          108 HTPPLMPAVAAEAMIAALN---QSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIA  183 (497)
T ss_dssp             CCCCBHHHHHHHHHHHHHC---CCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhhc---ccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHH
Confidence            4556677888887655544   223336665677888999888888887754 2378999999999999999884    2


Q ss_pred             ---------cCCCCC--CC-eEEEcCCCChhHHHHHHhcCC---EEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceE
Q psy13922         98 ---------EDVDGK--KP-GVLIPIPQYPLYSASLAEFNM---EQIGYYLDESKQWGLPISELERSITEARKH-CNPRA  161 (509)
Q Consensus        98 ---------~~gd~~--~~-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~  161 (509)
                               .+|.+.  ++ .|+++.+.|.++...+...|.   +++.+|.++  ++.+|++.|++.+++.... .++.+
T Consensus       184 ~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~  261 (497)
T 2qma_A          184 DKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLIPFA  261 (497)
T ss_dssp             HHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCEEEE
T ss_pred             HhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCcceE
Confidence                     122111  23 688899999999999888876   799999864  4689999999999863211 12447


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       162 ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      |+++.++||||...+   +++|+++|++||+++++|++|+.+.....  +..   ....+    +..+++ +.|++|.+ 
T Consensus       262 vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~~---~~~gi----~~~D~i-~~s~hK~l-  327 (497)
T 2qma_A          262 IVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--HKS---RLKGV----ERAHSI-SVDFHKLF-  327 (497)
T ss_dssp             EEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--TGG---GGTTG----GGCSEE-EEETTTTT-
T ss_pred             EEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--chH---hhcCc----ccCCEE-EEcchhcc-
Confidence            788999999999855   89999999999999999999998765421  111   11111    022355 44899998 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccC-cccccc-hhhcc
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG-QSVGQT-VMDCV  319 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-al~~~  319 (509)
                      +.| .++|++++  .++..++.+... ..+......   ....          ...   ..+..+.+ ..+.+. ++..+
T Consensus       328 ~~p-~~~G~l~~--~~~~~~~~~~~~-~~yl~~~~~---~~~~----------~~~---~~~~~~r~~~al~~~~~l~~l  387 (497)
T 2qma_A          328 YQT-ISCGALLV--NDKSNFKFLLHH-ADYLNREHD---ELPN----------LVD---KSIATTKRFDALKVFMTMQNV  387 (497)
T ss_dssp             CCC-SSCEEEEE--SCGGGGGGGCC-------------------------------------CCSCCCTHHHHHHHHHHT
T ss_pred             CCC-cceEEEEE--eCHHHHHHhcCC-chhcCCccc---cCCC----------ccc---cCCCCCCchhHHHHHHHHHHh
Confidence            544 68999975  666544333110 001000000   0000          000   00000000 000111 11111


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcCCCC---cH
Q psy13922        320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEGKCP---SV  395 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g~~~---~~  395 (509)
                       .            .+.++++.+...++++++.+.|+++|+++++ ++.++++.| ++.-.          +...   ..
T Consensus       388 -g------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~----------~~~~~~l~~  443 (497)
T 2qma_A          388 -G------------PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLF-RATHE----------TADLDELNK  443 (497)
T ss_dssp             -C------------HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEE-EECCS----------SSCHHHHHH
T ss_pred             -C------------HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEE-EEcCC----------ccCHHHHHH
Confidence             1            1236677888889999999999998898875 566665443 44311          0000   11


Q ss_pred             HHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCC
Q psy13922        396 LYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPG  475 (509)
Q Consensus       396 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      . +...+.+.|+.+.++..+                                                  .+        
T Consensus       444 ~-l~~~l~~~G~~~~~~~~~--------------------------------------------------~g--------  464 (497)
T 2qma_A          444 A-LRLEALTRGIAVLGETIV--------------------------------------------------DG--------  464 (497)
T ss_dssp             H-HHHHHHHHTSCBCEEEEE--------------------------------------------------TT--------
T ss_pred             H-HHHHHHhCCCEEEEeeEE--------------------------------------------------CC--------
Confidence            2 234555678877643211                                                  11        


Q ss_pred             ceeEEEEee---cChHHHHHHHHHHHHHHHH
Q psy13922        476 TYHFRTTIL---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       476 ~~~~Rls~~---~~~~~i~~~~~~l~~~~~~  503 (509)
                      ..++|+++.   ++++++++++++|++++++
T Consensus       465 ~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          465 KTALKFTILNPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            228999983   7999999999999998765

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=204.43  Aligned_cols=363  Identities=12%  Similarity=0.057  Sum_probs=227.0

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC--------CcEEEeCCHHHHHHHHHHHhh
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW--------QDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~--------~~i~~t~G~~~al~~~~~~l~   97 (509)
                      .|..+.+.+..++..   . ...|....+..++++.+++++.+.+|.+...        ...++|+|+|+++..++.+.+
T Consensus        91 ~~~~~~~~~~~~~n~---~-~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar  166 (481)
T 4e1o_A           91 WPSLLGDMLADAINC---L-GFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAAR  166 (481)
T ss_dssp             HHHHHHHHHHHHHCC---C-CSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCc---c-cCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHH
Confidence            344555555666554   3 3348888899999999999999998865332        367999999999988888775


Q ss_pred             cC--------CC-------CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceE
Q psy13922         98 ED--------VD-------GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRA  161 (509)
Q Consensus        98 ~~--------gd-------~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~  161 (509)
                      +.        +.       .++..|+++.++|.++...+...|.+++.+|.++  ++.+|++.|+++|++.... ..+.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~Le~~i~~~~~~g~~~~~  244 (481)
T 4e1o_A          167 KNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD--NFSLRGEALQKAIEEDKQRGLVPVF  244 (481)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCC--CCcCCHHHHHHHHHHHHhCCCCcEE
Confidence            31        00       0123889999999999999999999999999864  4689999999999864221 22677


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       162 ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      |+++.++|++|.+-+   +++|+++|++||+++++|++|.....-.. .+...   ...+.    ..+++++ +.+|.+ 
T Consensus       245 vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~-~~~~~---~~gi~----~aDsi~~-~~hK~l-  311 (481)
T 4e1o_A          245 VCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCP-EFRGF---LKGIE----YADSFTF-NPSKWM-  311 (481)
T ss_dssp             EEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSG-GGGGG---GTTGG----GCSEEEE-CHHHHS-
T ss_pred             EEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhCh-hhHHH---hcCcc----cCCEEEE-ChHHhc-
Confidence            788999999998844   99999999999999999999987643221 11111   11110    1236655 889998 


Q ss_pred             CCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccC
Q psy13922        242 GECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN  321 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  321 (509)
                      +.| ...|++++  .++............+......+  ..      +.+.++       .+..+++.  ....+...+.
T Consensus       312 ~~p-~g~g~l~~--~~~~~l~~~~~~~~~yl~~~~~~--~~------~~~~~~-------~~~~~r~~--~~l~~~~al~  371 (481)
T 4e1o_A          312 MVH-FDCTGFWV--KDKYKLQQTFSVNPIYLRHANSG--VA------TDFMHW-------QIPLSRRF--RSVKLWFVIR  371 (481)
T ss_dssp             SCC-SSCEEEEE--SBHHHHHTTTCCCCGGGCCTTTT--TS------CCGGGG-------SSSSCCCC--THHHHHHHHH
T ss_pred             CCC-CceEEEEE--eCHHHHHHHhcCCchhccCcccC--CC------CCcccc-------cccCCCCc--cHHHHHHHHH
Confidence            444 34566654  67765432211111111000000  00      000000       00111100  0001111110


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                               ....+.++++.+...++++++.+.|+++|++++..+....++++++.-...           ....+..++
T Consensus       372 ---------~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~-----------~~~~l~~~L  431 (481)
T 4e1o_A          372 ---------SFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS-----------LTENVLKEI  431 (481)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH-----------HHHHHHHHH
T ss_pred             ---------HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH-----------HHHHHHHHH
Confidence                     011234678888999999999999999999998755555555655541110           123434444


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      .++..+++.|+..                                                   .+        ..++|+
T Consensus       432 ~~~g~~~~~~~~~---------------------------------------------------~g--------~~~lR~  452 (481)
T 4e1o_A          432 AKAGRLFLIPATI---------------------------------------------------QD--------KLIIRF  452 (481)
T ss_dssp             HHHCSSBCEEEEE---------------------------------------------------TT--------EEEEEE
T ss_pred             HhCCeEEEEeeEE---------------------------------------------------CC--------EEEEEE
Confidence            4443344443221                                                   12        238999


Q ss_pred             Eee---cChHHHHHHHHHHHHHHHHHHh
Q psy13922        482 TIL---PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       482 s~~---~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                      ++.   .++++|++++++|+++.+++.+
T Consensus       453 ~~~~~~tt~~di~~~~~~i~~~~~~l~~  480 (481)
T 4e1o_A          453 TVTSQFTTRDDILRDWNLIRDAATLILS  480 (481)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            977   3789999999999999987654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.88  E-value=3.3e-21  Score=202.70  Aligned_cols=249  Identities=12%  Similarity=0.087  Sum_probs=168.6

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHH-HHHHHHHHhhc--CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASD-GIKSVLKLLIE--DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGY  131 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~-al~~~~~~l~~--~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v  131 (509)
                      ..++.+++.+++.+.+|.+  ++ +++|+|+++ ++..++..+..  +++    .|+++.+.|..+...++..|++++.+
T Consensus       131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~~~~~~~----~vi~~~~~h~s~~~~~~~~G~~~~~v  203 (456)
T 2z67_A          131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAARKKYGSN----VVIYPYASHKSPIKAVSFVGMNMRLV  203 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHHHHHCCC----EEEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHHHhcCCC----EEEEECCCcHHHHHHHHHcCCCceEE
Confidence            4566677777777776743  34 999999994 55545555543  454    79999999999999999999999999


Q ss_pred             ecCC-CCCCCCCHHHHHHHH-HhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCC
Q psy13922        132 YLDE-SKQWGLPISELERSI-TEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       132 ~~~~-~~~~~~d~~~L~~~i-~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~  209 (509)
                      +..+ +.++.+|++.|++++ +.. ...++.+|++++||||||.+.+   +++|+++|+++|+++++|++|..+..+   
T Consensus       204 ~~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g---  276 (456)
T 2z67_A          204 ETVLDGDRVYVPVEDIENAIKKEI-ELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY---  276 (456)
T ss_dssp             CCEEETTEEECCHHHHHHHHHHHH-HTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---
T ss_pred             EEeccCCCCCcCHHHHHHHHHHHh-hCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH---
Confidence            8742 235689999999999 421 0116778888999999999966   899999999999999999999876542   


Q ss_pred             ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcc-hhhhhccccccCC
Q psy13922        210 KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPT-VLALVSLPQLFDD  288 (509)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~  288 (509)
                       ..+.  .......   ..+++ +.|++|.+ + ++.++||+++  .++++++.+.....++...+ ..           
T Consensus       277 -~~~~--~~~~~~~---~~D~~-~~s~hK~~-~-~p~g~G~l~~--~~~~~~~~l~~~~~g~~~~~~~~-----------  334 (456)
T 2z67_A          277 -YLEK--LKKAFKY---RVDAV-VSSSDKNL-L-TPIGGGLVYS--TDAEFIKEISLSYPGRASATPVV-----------  334 (456)
T ss_dssp             -HHHH--HHHHHTS---CCSEE-EEEHHHHH-C-CCSSCEEEEE--SCHHHHHHHHTTSCSCBCSHHHH-----------
T ss_pred             -hhHH--HHHhhCC---CCCEE-EEcCCCCc-C-CCCCeEEEEE--cCHHHHhhcCcCCCCCCCCCHHH-----------
Confidence             1111  1111110   12354 55899976 3 5688999984  57888887743222111111 11           


Q ss_pred             CCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeecc
Q psy13922        289 PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNP  365 (509)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~  365 (509)
                             .               ..+++..+             ..++++++.+...++++++.+.|++++   |+.+.+
T Consensus       335 -------~---------------~~aal~~l-------------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~  379 (456)
T 2z67_A          335 -------N---------------TLVSLLSM-------------GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD  379 (456)
T ss_dssp             -------H---------------HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC
T ss_pred             -------H---------------HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC
Confidence                   0               11122111             123367888899999999999999886   777777


Q ss_pred             CCceeEEeecC
Q psy13922        366 VQGAMYAFPQM  376 (509)
Q Consensus       366 ~~~g~~~~~~~  376 (509)
                      ++ +++ ++++
T Consensus       380 ~~-~~v-~~~~  388 (456)
T 2z67_A          380 VE-SPI-ASCI  388 (456)
T ss_dssp             CC-CSS-EEEE
T ss_pred             CC-CeE-EEEE
Confidence            66 443 4444

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.88  E-value=3.6e-21  Score=199.82  Aligned_cols=176  Identities=12%  Similarity=0.120  Sum_probs=136.7

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----  121 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----  121 (509)
                      +++|+ ..-..++++.+|++++        .+++++++|+++|++.++.+++++||    +|+++.|.|.+....+    
T Consensus        76 y~r~~-~p~~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~l  142 (415)
T 2fq6_A           76 YGRRG-TLTHFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFIEQGD----HVLMTNTAYEPSQDFCSKIL  142 (415)
T ss_dssp             CTTTC-CHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTC----EEEEETTSCHHHHHHHHHTG
T ss_pred             ccCCC-CchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHH
Confidence            34343 3334779999999883        24677788899999999999999998    9999999999877654    


Q ss_pred             HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--CCcEEEEccc
Q psy13922        122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR--EKLFLFADEV  199 (509)
Q Consensus       122 ~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~--~~i~lI~Dea  199 (509)
                      +..|+++..++.+       |++.|++++++     ++++|++++|+||+|.+++   +++|+++|++  +|+++|+|++
T Consensus       143 ~~~G~~v~~v~~~-------d~~~le~ai~~-----~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a  207 (415)
T 2fq6_A          143 SKLGVTTSWFDPL-------IGADIVKHLQP-----NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNT  207 (415)
T ss_dssp             GGGTCEEEEECTT-------CGGGGGGGCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECT
T ss_pred             HHcCcEEEEECCC-------CHHHHHHhhcc-----CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECC
Confidence            4579999988643       78999988876     7999999999999999987   8999999999  9999999999


Q ss_pred             CCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe-eEEEeeecCCHHHHHHHHHhhh
Q psy13922        200 YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR-GGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       200 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr-~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      |......     .++     +.+      ..++++|+||.+ |.+|.+ +||++   .++++++.+.....
T Consensus       208 ~a~~~~~-----~p~-----~~g------~Div~~S~sK~l-g~~g~~~~G~l~---~~~~~~~~l~~~~~  258 (415)
T 2fq6_A          208 WAAGVLF-----KAL-----DFG------IDVSIQAATKYL-VGHSDAMIGTAV---CNARCWEQLRENAY  258 (415)
T ss_dssp             TTTTTSS-----CGG-----GGT------CSEEEEETTTTT-TCSSSCCCEEEE---ECTTTHHHHHHHHH
T ss_pred             CcccccC-----Ccc-----ccC------CeEEEEeCcccc-CCCCCceEEEEE---eCHHHHHHHHHHHH
Confidence            9864321     121     111      146677999999 567754 68887   56677777776543

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.88  E-value=1.2e-20  Score=199.55  Aligned_cols=358  Identities=11%  Similarity=0.029  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-------CcEEEeCCHHHHHHHHHHHhhcC--
Q psy13922         29 DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-------QDVILSAGASDGIKSVLKLLIED--   99 (509)
Q Consensus        29 ~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~~~--   99 (509)
                      .+.+.+...+..   . ...|....+..++++.+++++.+.+|.+...       ...++|+|+|+++..++.+.+..  
T Consensus        89 ~~~~~l~~~~n~---~-~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~  164 (475)
T 3k40_A           89 IVADMLSGAIAC---I-GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKL  164 (475)
T ss_dssp             HHHHHHHHHHCC---C-SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc---c-ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHH
Confidence            344444444433   3 3348888888999999999999998865321       36899999999998888776421  


Q ss_pred             ------CC-------CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEe
Q psy13922        100 ------VD-------GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVII  165 (509)
Q Consensus       100 ------gd-------~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~  165 (509)
                            +.       .++..|+++.++|.++...+...|++++.+|.+++  + +|++.|+++|++..+. ..+.+|+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~--~-~d~~~L~~~i~~~~~~~~~~~~v~~~  241 (475)
T 3k40_A          165 KEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENH--R-MRGAALEKAIEQDVAEGLIPFYAVVT  241 (475)
T ss_dssp             HHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTT--B-CCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCC--C-cCHHHHHHHHHHHHHCCCccEEEEEE
Confidence                  10       01227999999999999999999999999998753  5 9999999999874322 226677889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       166 ~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      .++|++|.+-+   +++|+++|++||+++++|++|+....-.. .+...   ...+.    ..+.+++ +.+|.+ + ..
T Consensus       242 ~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~-~~~~~---~~gi~----~~Ds~~~-~~hK~l-~-~p  307 (475)
T 3k40_A          242 LGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICP-EYRHL---MKGIE----SADSFNF-NPHKWM-L-VN  307 (475)
T ss_dssp             BSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSG-GGGGG---GTTGG----GCSEEEE-CHHHHS-S-CC
T ss_pred             ecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCH-hhHHH---hcCcc----cCCEEEE-Cchhcc-C-CC
Confidence            99999999855   99999999999999999999987543211 11111   11110    1236655 889988 3 33


Q ss_pred             CeeEEEeeecCCHHHH-HHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCC
Q psy13922        246 LRGGYSEVINLDPGVK-AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ  324 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  324 (509)
                      ..+|++++  .++... +.+.. ...+......+.  .      ..+.+       ..+..+++.  ....+..++.   
T Consensus       308 ~g~g~l~~--~~~~~l~~~~~~-~~~yl~~~~~~~--~------~~~~~-------~~~~~sr~~--~~l~l~~al~---  364 (475)
T 3k40_A          308 FDCSAMWL--KDPSWVVNAFNV-DPLYLKHDMQGS--A------PDYRH-------WQIPLGRRF--RALKLWFVLR---  364 (475)
T ss_dssp             SSCEEEEE--SSGGGC-------------------------------------------CCCGGG--THHHHHHHHH---
T ss_pred             CceEEEEE--eCHHHHHHHhcC-CccccCCCcCCC--C------CCccc-------ccccCCCcc--cHHHHHHHHH---
Confidence            45677764  666543 33221 111110000000  0      00000       001111100  0011111111   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        325 PGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                            ....+.++++.+...++++++.+.|+++|++++..+....++++++.-...           ....+..++.++
T Consensus       365 ------~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~-----------~~~~l~~~L~~~  427 (475)
T 3k40_A          365 ------LYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNE-----------RNEALLKRINGR  427 (475)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHH-----------HHHHHHHHHHHH
T ss_pred             ------HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchH-----------HHHHHHHHHHhC
Confidence                  001233678888999999999999999999998755444444544531110           123444555555


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      .++.+.|+..                                                   .        |..++|++++
T Consensus       428 g~~~~~~~~~---------------------------------------------------~--------g~~~lR~~~~  448 (475)
T 3k40_A          428 GHIHLVPAKI---------------------------------------------------K--------DVYFLRMAIC  448 (475)
T ss_dssp             TSCBCEEEEE---------------------------------------------------T--------TEEEEEEECC
T ss_pred             CcEEEEeeEE---------------------------------------------------C--------CEEEEEEEeC
Confidence            4444443221                                                   1        2239999987


Q ss_pred             ---cChHHHHHHHHHHHHHHHHHHh
Q psy13922        485 ---PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       485 ---~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                         +++++|+.++++|+++.+++.+
T Consensus       449 ~~~tt~~di~~~~~~i~~~~~~~~~  473 (475)
T 3k40_A          449 SRFTQSEDMEYSWKEVSAAADEMEQ  473 (475)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence               4889999999999999987754

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.87  E-value=1.3e-20  Score=194.79  Aligned_cols=178  Identities=13%  Similarity=0.093  Sum_probs=133.9

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH---
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL---  121 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~---  121 (509)
                      .+++|+ .....++++.+++++    |    .+++++++++++|+.. +..++++||    +|+++.|+|.+....+   
T Consensus        60 ~y~r~~-~p~~~~l~~~la~l~----g----~~~~~~~~sG~~Ai~~-~~~l~~~gd----~Vi~~~~~y~~~~~~~~~~  125 (400)
T 3nmy_A           60 EYSRTH-NPTRFAYERCVAALE----G----GTRAFAFASGMAATST-VMELLDAGS----HVVAMDDLYGGTFRLFERV  125 (400)
T ss_dssp             CBTTTC-CHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHH-HHTTSCTTC----EEEEESSCCHHHHHHHHHT
T ss_pred             ccccCC-CHHHHHHHHHHHHHh----C----CCCEEEecCHHHHHHH-HHHHcCCCC----EEEEeCCCchHHHHHHHHh
Confidence            334443 233467888888776    3    2367777777999988 566788888    9999999999766554   


Q ss_pred             --HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccc
Q psy13922        122 --AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV  199 (509)
Q Consensus       122 --~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Dea  199 (509)
                        +..|.+++.++.+       |++.+++++++     ++++|++++|+||+|.+++   +++|+++|+++|+++|+|++
T Consensus       126 ~~~~~g~~~~~v~~~-------d~~~l~~~i~~-----~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~  190 (400)
T 3nmy_A          126 RRRTAGLDFSFVDLT-------DPAAFKAAIRA-----DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNT  190 (400)
T ss_dssp             HHHHHCCEEEEECTT-------SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECT
T ss_pred             hHhhcCeEEEEECCC-------CHHHHHHHhcc-----CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECC
Confidence              3459999998754       78999999876     7999999999999999987   99999999999999999999


Q ss_pred             CCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE-EeeecCCHHHHHHHHHhhh
Q psy13922        200 YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY-SEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       200 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~-v~~~~~~~~~~~~l~~~~~  269 (509)
                      |....+..     ++     +.+      ..++++|+||.+ |-+|.++|+ ++ +..++++.+.+.....
T Consensus       191 ~~~~~~~~-----~~-----~~g------~div~~S~sK~l-~g~g~~~gG~~v-v~~~~~~~~~l~~~~~  243 (400)
T 3nmy_A          191 FASPMLQR-----PL-----SLG------ADLVVHSATKYL-NGHSDMVGGIAV-VGDNAELAEQMAFLQN  243 (400)
T ss_dssp             TTHHHHCC-----GG-----GGT------CSEEEEETTTTT-TCSSSCCCEEEE-ECSCHHHHHHHHHHHH
T ss_pred             CcccccCC-----hh-----hcC------CcEEEecCcccc-CCCCCcceeEEE-EeCCHHHHHHHHHHHH
Confidence            97543221     11     011      146688999999 457777766 32 3378899988877655

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.87  E-value=1.6e-20  Score=192.94  Aligned_cols=154  Identities=16%  Similarity=0.259  Sum_probs=129.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh----
Q psy13922         21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL----   96 (509)
Q Consensus        21 ~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----   96 (509)
                      ++.|.+|+.+++++.+.+.+   .   .|.+..+..+++++++++++        .+++++++++++++..++.++    
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~---~---~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sGt~a~~~al~~~~~~~   73 (390)
T 3b8x_A            8 LASSTWDDLEYKAIQSVLDS---K---MFTMGEYVKQYETQFAKTFG--------SKYAVMVSSGSTANLLMIAALFFTK   73 (390)
T ss_dssp             SCCCCCCHHHHHHHHHHHHH---T---CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHc---C---CCCCChHHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHHhhh
Confidence            46788999999999999876   2   25567788999999999983        126777888889999999998    


Q ss_pred             ---hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         97 ---IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        97 ---~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                         .++|+    .|+++.|+|.++...++..|++++.++.+++ ++.+|++.|++.+++     ++++|++++   ++|.
T Consensus        74 ~~~~~~g~----~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~---~~g~  140 (390)
T 3b8x_A           74 KPRLKKGD----EIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTD-----STKAILTVN---LLGN  140 (390)
T ss_dssp             SCSCCTTC----EEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCT-----TEEEEEEEC---GGGC
T ss_pred             hcCCCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCc-----CCeEEEEEC---CccC
Confidence               56676    9999999999999999999999999998765 478999999999876     789999874   3444


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      .   .++++|.++|+++|+++|+|++|+...
T Consensus       141 ~---~~~~~i~~l~~~~~~~li~D~a~~~g~  168 (390)
T 3b8x_A          141 P---NNFDEINKIIGGRDIILLEDNCESMGA  168 (390)
T ss_dssp             C---CCHHHHHHHHTTSCCEEEEECTTCTTC
T ss_pred             h---hhHHHHHHHHHHcCCEEEEECcCcccC
Confidence            4   459999999999999999999998543

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.86  E-value=4.1e-20  Score=195.03  Aligned_cols=302  Identities=13%  Similarity=0.049  Sum_probs=177.6

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC------CcchHHHHHHHHHHHhhhcCCCCCCC---cEEEeCCHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD------SPGIEIIRRHVAQYISRRDGQPADWQ---DVILSAGASDGIKSV   92 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~------~~g~~~lr~~va~~l~~~~g~~~~~~---~i~~t~G~~~al~~~   92 (509)
                      ++...|+.|++++...+.+.-   ...|+.      ..-..++++...+.+.+.+|.  +.+   ..++++++++|+..+
T Consensus        62 s~n~~~~~V~eA~~~~l~~~y---~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt~An~~a  136 (490)
T 2a7v_A           62 SENFCSRAALEALGSCLNNKY---SEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGSPANLAV  136 (490)
T ss_dssp             TCCCCCHHHHHHHTSGGGTCC---CCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCC---ccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchHHHHHHH
Confidence            444468999999988776521   111222      111235664444555444453  333   235566788999999


Q ss_pred             HHHhhcCCCCCCCeEEEcCCCChhHHH--------HHHhcCCE--EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEE
Q psy13922         93 LKLLIEDVDGKKPGVLIPIPQYPLYSA--------SLAEFNME--QIGYYLDESKQWGLPISELERSITEARKHCNPRAI  162 (509)
Q Consensus        93 ~~~l~~~gd~~~~~Vlv~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~i  162 (509)
                      +.+++++||    +|+++.+.|.++..        .+...|..  ++.++++++ ++.+|++.|++.+...    ++++|
T Consensus       137 l~al~~pGD----~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~-~~~iD~d~le~~l~~~----~~klI  207 (490)
T 2a7v_A          137 YTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF----RPRLI  207 (490)
T ss_dssp             HHHHCCSCE----ECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH----CCSEE
T ss_pred             HHHHcCCCC----EecccCccccccccchhhhcchhHHHcCCeEEEEecccccc-cCCcCHHHHHHHHhhc----CCcEE
Confidence            999999999    99999998865421        22344543  444444433 4689999999999764    78999


Q ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC-cccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ-DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       163 vi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      +++.++||+  ..   ++++|.++|+++|+++++|+++. ++...+. ...++ .          ..++ ++.|+||++ 
T Consensus       208 i~~~s~~~~--~~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~-~~~~~-~----------~aDi-v~~S~hK~l-  268 (490)
T 2a7v_A          208 IAGTSAYAR--LI---DYARMREVCDEVKAHLLADMAHISGLVAAKV-IPSPF-K----------HADI-VTTTTHKTL-  268 (490)
T ss_dssp             EECCSSCCS--CC---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTS-SCCGG-G----------TCSE-EEEESSGGG-
T ss_pred             EEcCCCCCC--cc---cHHHHHHHHHHcCCEEEEccccccccccCCc-CCCCC-C----------CCCE-EEECCcccC-
Confidence            988899985  33   38999999999999999999975 3333221 11121 1          1224 456999988 


Q ss_pred             CCCCCeeEEEeeecCCH--------------HHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhc
Q psy13922        242 GECGLRGGYSEVINLDP--------------GVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDG  305 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~--------------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (509)
                        .|.++|++++  .+.              ++.+.+++.....  ++++..                            
T Consensus       269 --~Gp~GG~i~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~----------------------------  316 (490)
T 2a7v_A          269 --RGARSGLIFY--RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNH----------------------------  316 (490)
T ss_dssp             --CSCSCEEEEE--ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHH----------------------------
T ss_pred             --ccccchheee--ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHH----------------------------
Confidence              3667899973  332              3556666543321  233333                            


Q ss_pred             ccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHH
Q psy13922        306 CRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIA  384 (509)
Q Consensus       306 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~  384 (509)
                            ..+++..++.         .-...+.++..+.+.++++++.+.|.+. |+++.. .....++|+++.-      
T Consensus       317 ------~iaAla~Al~---------~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~------  374 (490)
T 2a7v_A          317 ------AIAAVAVALK---------QACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRP------  374 (490)
T ss_dssp             ------HHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTT------
T ss_pred             ------HHHHHHHHHH---------HHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCC------
Confidence                  2223222211         1111224667788889999999999998 888864 3456778877751      


Q ss_pred             HHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        385 KAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       385 ~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                          .|+. ... +...|++.||.+..+..++
T Consensus       375 ----~g~~-~~~-~~~~L~~~GI~v~~~~~p~  400 (490)
T 2a7v_A          375 ----KGLD-GAR-AERVLELVSITANKNTCPG  400 (490)
T ss_dssp             ----TTCC-HHH-HHHHHHHTTEECEEECCTT
T ss_pred             ----CCCC-HHH-HHHHHHhCCeEEecCccCC
Confidence                1222 233 5778889999998765444

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.86  E-value=1.1e-21  Score=205.91  Aligned_cols=166  Identities=15%  Similarity=0.043  Sum_probs=121.5

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEE
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ  128 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~  128 (509)
                      |.+.....++++.+++ +    |.  + +++++|+|+++++..++++++++||    .|+++.|+|.++...+...|+++
T Consensus        53 ~~~~~~~~~~~~~la~-~----g~--~-~~v~~~~G~t~a~~~~~~a~~~~gd----~Vlv~~~~h~s~~~~~~~~G~~~  120 (446)
T 2x3l_A           53 HHPEEVILKSMKQVEK-H----SD--Y-DGYFLVNGTTSGILSVIQSFSQKKG----DILMARNVHKSVLHALDISQQEG  120 (446)
T ss_dssp             TSCSSHHHHHHHHHCS-C----TT--E-EEEEESSHHHHHHHHHHHTTTTSSS----CEEECTTCCHHHHHHHHHHTCCE
T ss_pred             cCcchHHHHHHHHHHh-c----CC--C-ceEEEeCCHHHHHHHHHHHhcCCCC----EEEEecCccHHHHHHHHHcCCeE
Confidence            3445555677777777 6    42  2 6899999999999999999999988    99999999999999999999999


Q ss_pred             EEEec--CCCCC--CCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-c
Q psy13922        129 IGYYL--DESKQ--WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD-N  203 (509)
Q Consensus       129 ~~v~~--~~~~~--~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~  203 (509)
                      +.++.  +++.+  +.+|++.|   +..     ++++|++++ .|++|.+++   +++|+++|+++|+++|+||+|+. +
T Consensus       121 ~~v~~~~~~~~~~~~~~d~~~l---~~~-----~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~  188 (446)
T 2x3l_A          121 HFIETHQSPLTNHYNKVNLSRL---NND-----GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHF  188 (446)
T ss_dssp             EECEEEECTTTSSEEEEEC---------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred             EEEeCeeccccCcCCCCCHHHH---cCC-----CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhh
Confidence            99987  43211  45777777   333     689999988 556999988   88999999999999999999986 3


Q ss_pred             cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        204 VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+.+.  ..+....    +     . -+++.|+||.+.|  +.++||++
T Consensus       189 ~f~~~--~~~~~~~----g-----~-Di~~~S~~K~l~~--~~g~g~l~  223 (446)
T 2x3l_A          189 GLQGF--PDSTLNY----Q-----A-DYVVQSFHKTLPA--LTMGSVLY  223 (446)
T ss_dssp             TSTTS--CCCGGGG----T-----C-SEEEECHHHHSSS--CTTCEEEE
T ss_pred             ccCCC--CCChHHc----C-----C-CEEEECCcccccc--ccccEEEE
Confidence            34332  2222211    1     1 2557799996633  34579997

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.85  E-value=7.9e-20  Score=190.21  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=124.4

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEE
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQI  129 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~  129 (509)
                      ...++++.++++++.        +..++++++++|+..+++++.++||    +|+++.++|.++...+    +..|++++
T Consensus        59 ~~~~l~~~la~~~g~--------~~~v~~~sGt~A~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~  126 (421)
T 2ctz_A           59 TVDVLEKRLAALEGG--------KAALATASGHAAQFLALTTLAQAGD----NIVSTPNLYGGTFNQFKVTLKRLGIEVR  126 (421)
T ss_dssp             HHHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHHHCCTTC----EEEECSCCCHHHHHHHHTHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhCC--------CceEEecCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCCEEE
Confidence            347899999998831        1334455559999999999988888    9999999999987765    67899999


Q ss_pred             EE-ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC
Q psy13922        130 GY-YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG  208 (509)
Q Consensus       130 ~v-~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~  208 (509)
                      .+ +.+       |++.+++.+++     ++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|..+.+.+ 
T Consensus       127 ~~~~~~-------d~~~l~~~i~~-----~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~-  190 (421)
T 2ctz_A          127 FTSREE-------RPEEFLALTDE-----KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL-  190 (421)
T ss_dssp             ECCTTC-------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC-
T ss_pred             EECCCC-------CHHHHHHhhcc-----CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccC-
Confidence            88 543       78999999876     7999999999999999998   8999999999999999999993222221 


Q ss_pred             CccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        209 SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                         .++     ..+.      .++++|+||.+ |.+|.|+|++++
T Consensus       191 ---~~~-----~~~~------Di~~~s~~K~l-~~~g~~~G~~~~  220 (421)
T 2ctz_A          191 ---RPL-----AWGA------ALVTHSLTKWV-GGHGAVIAGAIV  220 (421)
T ss_dssp             ---CGG-----GGTC------SEEEEETTTTT-TCSSCCCCEEEE
T ss_pred             ---Ccc-----ccCC------eEEEECCcccc-cCCCCcEEEEEE
Confidence               111     1111      35677999999 678999999874

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.84  E-value=4.2e-19  Score=184.37  Aligned_cols=231  Identities=15%  Similarity=0.122  Sum_probs=168.2

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE---eCCHHHHHHHHHHHhhcCCCCCCCeEEEcC-CCChhHHHH----
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL---SAGASDGIKSVLKLLIEDVDGKKPGVLIPI-PQYPLYSAS----  120 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-p~y~~~~~~----  120 (509)
                      |+. .|..++++.+|++++        .+..++   ++|+++|+..++.+++++||    +|+++. |.|.++...    
T Consensus        70 y~~-~~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~pGD----~Vl~~~~~~y~~~~~~~g~~  136 (427)
T 3i16_A           70 YGD-IGRDSLDAVYARVFN--------TESALVRPHFVNGTHALGAALFGNLRPGN----TMLSVCGEPYDTLHDVIGIT  136 (427)
T ss_dssp             TTC-HHHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHHCCTTC----EEEESSSSCCGGGHHHHTCS
T ss_pred             CCH-HHHHHHHHHHHHHhC--------CcceEEeCCCccHHHHHHHHHHHHhCCCC----EEEEeCCCccHHHHHHHhcc
Confidence            443 366788899998883        233355   78889999999999999998    999998 999988744    


Q ss_pred             -------HHhcCCEEEEEecCCCCCCCCCHHHHHHHHH--hhhccCCceEEEEeC----CCCCCCCCCCHHHHHHHHHHH
Q psy13922        121 -------LAEFNMEQIGYYLDESKQWGLPISELERSIT--EARKHCNPRAIVIIN----PGNPTGQVLTKENIQDIIKFA  187 (509)
Q Consensus       121 -------~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~--~~~~~~~~~~ivi~~----p~NPtG~~~s~~~l~~l~~ia  187 (509)
                             ++..|++++.++.+++  +.+|++.++++++  .     ++++|++++    |+||||.+   .++++|+++|
T Consensus       137 ~~~~~~~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~~~-----~tklV~i~~s~~~p~nptg~i---~dl~~i~~la  206 (427)
T 3i16_A          137 ENSNMGSLKEFGINYKQVDLKED--GKPNLEEIEKVLKEDE-----SITLVHIQRSTGYGWRRALLI---EDIKSIVDCV  206 (427)
T ss_dssp             CCCSSCCTGGGTCEEEECCCCTT--SSCCHHHHHHHHHTCT-----TEEEEEEECSCCSSSSCCCCH---HHHHHHHHHH
T ss_pred             ccchHHHHHHcCCEEEEecCccC--CCcCHHHHHHHhhCCC-----CCEEEEEEcCCCCCCCCcccH---HHHHHHHHHH
Confidence                   4567999999998755  3789999999998  5     799999988    99999877   6799999999


Q ss_pred             HH--CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHHHH
Q psy13922        188 HR--EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKAML  264 (509)
Q Consensus       188 ~~--~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l  264 (509)
                      ++  +|+++|+|++|..+.+...    +.     +.+      ..++++|+||.+ |.+| .++||++   +++++++++
T Consensus       207 ~~~~~g~~livD~a~~~~~~~~~----p~-----~~g------aDiv~~S~sK~l-gg~g~~~gG~i~---~~~~li~~l  267 (427)
T 3i16_A          207 KNIRKDIICFVDNCYGEFMDTKE----PT-----DVG------ADLIAGSLIKNI-GGGIAPTGGYLA---GTKDCIEKT  267 (427)
T ss_dssp             HHHCTTSEEEEECTTTTTSSSSC----GG-----GGT------CSEEEEETTSGG-GTTTCCSCEEEE---ECHHHHHHH
T ss_pred             HHhCCCCEEEEECCCccccccCC----cc-----ccC------CeEEEecCcccC-CCCCCceEEEEE---ECHHHHHHH
Confidence            99  9999999999998764321    11     111      146688999999 5455 5789988   799999999


Q ss_pred             HHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHH
Q psy13922        265 HKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDS  343 (509)
Q Consensus       265 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (509)
                      +..... ..+....     +                            ...+...+           .+..+.....++.
T Consensus       268 ~~~~~~~~~g~~~~-----~----------------------------~~~~a~~~-----------l~gl~~~~~r~~~  303 (427)
T 3i16_A          268 SYRLTVPGIGGECG-----S----------------------------TFGVVRSM-----------YQGLFLAPHISME  303 (427)
T ss_dssp             HHHHSCTTTGGGCC-----C----------------------------CTTCHHHH-----------HHHHHHHHHHHHH
T ss_pred             HHhcccCccCccCC-----c----------------------------cHHHHHHH-----------HHHHHHHHHHHHH
Confidence            875431 1111100     0                            01101111           1122235667788


Q ss_pred             HHHHHHHHHHHHhcCCCCeeccC
Q psy13922        344 LKQRAKMVADTFNSIEGMSCNPV  366 (509)
Q Consensus       344 ~~~~~~~l~~~L~~~~g~~~~~~  366 (509)
                      ..+++..+.+.|++. ++++++.
T Consensus       304 ~~~~a~~la~~L~~~-g~~V~p~  325 (427)
T 3i16_A          304 ALKGAILCSRIMELA-GFEVMPK  325 (427)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEESC
T ss_pred             HHHHHHHHHHHHHhC-CCeecCC
Confidence            888899999999998 6677654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.84  E-value=9.4e-20  Score=190.53  Aligned_cols=317  Identities=16%  Similarity=0.119  Sum_probs=185.2

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH-hhcCCCCCCCeEEEcCCCChhHHHHH----HhcCC
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL-LIEDVDGKKPGVLIPIPQYPLYSASL----AEFNM  126 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~-l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~  126 (509)
                      ..|..++.+++.+.+.+.+|  .+++++++++|++.+.+.+..+ ..++||    +|+++.++|..+...+    +..|+
T Consensus       103 ~~g~~~~~~~~~~~la~~~g--~~~~~i~~~~g~taa~ea~~~a~~~~~gd----~Viv~~~~h~s~~~~~~~~a~~~G~  176 (438)
T 1wyu_A          103 SQGVLQATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRETGRM----GVLVSQGVHPEYRAVLRAYLEAVGA  176 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHHHTCC----EEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHHHHhC--CCccceEEeCcHHHHHHHHHHHHhcCCCC----EEEEcCccCHhHHHHHHHHHHHCCC
Confidence            45666666666666665556  3567889999999443333333 245677    9999999999988665    44799


Q ss_pred             EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccc-CCcccc
Q psy13922        127 EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV-YQDNVY  205 (509)
Q Consensus       127 ~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Dea-y~~~~~  205 (509)
                      +++.++.+   ++.+|++.    +++     ++++|++++| ||||.+.+   +++|+++|+++|+++|+|.. .+   +
T Consensus       177 ~v~~v~~~---~~~~d~~~----i~~-----~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a---~  237 (438)
T 1wyu_A          177 KLLTLPLE---GGRTPLPE----VGE-----EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS---L  237 (438)
T ss_dssp             EEEEECCB---TTBCCCCC----CCT-----TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG---G
T ss_pred             EEEEEcCc---CCccCHHH----hCC-----CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh---c
Confidence            99999872   24677766    444     7999999999 99999986   99999999999999996632 21   1


Q ss_pred             cCCCccccHHHHHHHhCCCCCCceeEEEEecccccC---CCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcc
Q psy13922        206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM---GECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSL  282 (509)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~---G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  282 (509)
                      + .  ......    .+     .+++++ | +|.|+   |+.|.++||++   .++++++.+.....+. .....+....
T Consensus       238 g-~--~~~~~~----~g-----~D~~~~-s-~kk~~~~~~~~Gp~~G~l~---~~~~~~~~l~~~~~g~-~~~~~~~~~~  299 (438)
T 1wyu_A          238 G-V--LKPPGA----YG-----ADIAVG-D-GQSLGLPMGFGGPHFGFLA---TKKAFVRQLPGRLVSE-TVDVEGRRGF  299 (438)
T ss_dssp             G-T--BCCHHH----HT-----CSEEEE-E-CTTTTCCCGGGCSCCEEEE---ECGGGGGGCCSCCEEE-EEBTTSCEEE
T ss_pred             c-C--cCCCcc----CC-----CCEEEE-C-CcccCCCccCCCCCeeEEE---EcHHHHHhCCCceecc-ccccCCCcce
Confidence            1 1  111111    11     125544 6 67651   24466899998   5676665542111000 0000000000


Q ss_pred             ccccCCCCCchhHHHHHHHhhhcccCcc---cccchhhcc--cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13922        283 PQLFDDPRFPDDVKQRAQAVLDGCRGQS---VGQTVMDCV--VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNS  357 (509)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  357 (509)
                        .+   .++.. -+..  ....+..+.   ....++.++  +.         ....+.++++.+.+.++++++.+.|++
T Consensus       300 --~~---~l~~~-~~~~--r~~~~t~~~~~~~~~~a~~aa~~l~---------~~~~~g~~~~~~~~~~~~~~l~~~L~~  362 (438)
T 1wyu_A          300 --IL---TLQAR-EQYI--RRAKAKSNITTNAQLTALMGAMYLA---------ALGPEGLREVALKSVEMAHKLHALLLE  362 (438)
T ss_dssp             --EE---CCGGG-SHHH--HGGGSSCCCCSCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --ee---ecccc-cccc--chhcccCCccchHHHHHHHHHHHHH---------HhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              00   00000 0000  000111111   011111111  11         001123677888899999999999999


Q ss_pred             CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE--ecCCCCCCCCCccccccchhhhhhhH
Q psy13922        358 IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI--VPGAGFGQVPGTYHFRQQVWWRHYTQ  435 (509)
Q Consensus       358 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v--~pg~~f~~~~~~~~~r~~~~~~~~~~  435 (509)
                      +||+++..+. .++.++.++.+            .+..++..++ .++||.+  .++..|..                  
T Consensus       363 ~~g~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~L-~~~gi~v~~~~~~~~~~------------------  410 (438)
T 1wyu_A          363 VPGVRPFTPK-PFFNEFALALP------------KDPEAVRRAL-AERGFHGATPVPREYGE------------------  410 (438)
T ss_dssp             STTCEECSCS-SBCSEEEEECS------------SCHHHHHHHH-HHTTCCCCEECCTTSCS------------------
T ss_pred             CCCeEECCCC-CeEEEEEEeCC------------CCHHHHHHHH-HHCCceeccccccccCC------------------
Confidence            9899887654 34333333321            1234444444 4569998  66654432                  


Q ss_pred             HHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHH
Q psy13922        436 RAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFH  501 (509)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~  501 (509)
                                                     +          ++|+|+.  ++++++++++++|++++
T Consensus       411 -------------------------------~----------~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          411 -------------------------------N----------LALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             -------------------------------S----------EEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             -------------------------------C----------eEEEEecccCCHHHHHHHHHHHHHHh
Confidence                                           2          8999999  79999999999998764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.84  E-value=8.8e-19  Score=187.05  Aligned_cols=196  Identities=15%  Similarity=0.093  Sum_probs=145.2

Q ss_pred             cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--------CCCC--CCCeEEEcCCCChhH
Q psy13922         48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--------DVDG--KKPGVLIPIPQYPLY  117 (509)
Q Consensus        48 ~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~gd~--~~~~Vlv~~p~y~~~  117 (509)
                      .|....+..++.+.+.+++.+.+|.+  .+++++|+|+++++..++.+++.        +|+.  .+..|+++.+.|.++
T Consensus       139 ~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~  216 (515)
T 2jis_A          139 TYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI  216 (515)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             chhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH
Confidence            37767777788888888887777754  78999999999999988888742        3420  012788899999999


Q ss_pred             HHHHHhcCC---EEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcE
Q psy13922        118 SASLAEFNM---EQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF  193 (509)
Q Consensus       118 ~~~~~~~g~---~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~  193 (509)
                      ...++..|.   +++.+|.++  ++.+|++.|++.+++.... .++++|++++|+||||.+.+   +++|+++|+++|++
T Consensus       217 ~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g~~  291 (515)
T 2jis_A          217 QKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHGLW  291 (515)
T ss_dssp             HHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCE
T ss_pred             HHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCCe
Confidence            999998888   899999864  4689999999999863221 24889999999999999976   89999999999999


Q ss_pred             EEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH-HHHHH
Q psy13922        194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-GVKAM  263 (509)
Q Consensus       194 lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~-~~~~~  263 (509)
                      +++|++|+.+..... .+..   ....+.    ..+++ +.|++|.+ | .+.++|++++  .++ +++..
T Consensus       292 l~vD~a~~~~~~~~~-~~~~---~~~g~~----~aD~v-~~s~hK~l-~-~p~g~G~l~~--~~~~~~~~~  349 (515)
T 2jis_A          292 LHVDAAWGGSVLLSQ-THRH---LLDGIQ----RADSV-AWNPHKLL-A-AGLQCSALLL--QDTSNLLKR  349 (515)
T ss_dssp             EEEEETTGGGGGGCT-TTGG---GGTTGG----GCSEE-EECTTSTT-C-CCSCCEEEEE--SCCSCHHHH
T ss_pred             EEEehhhhhHHHhCh-hhHh---hcCCCc----cCCEE-EECccccc-C-CCCCeeEEEE--eChHHHHHH
Confidence            999999998776422 1111   111110    12255 45999998 5 3457898875  555 46554

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.74  E-value=1.1e-22  Score=213.57  Aligned_cols=199  Identities=12%  Similarity=-0.014  Sum_probs=137.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|++++.+++.+   .....|+ .....+|.+.+++++    +   ..+.+++++++++|+..+++.+..-.  .++.
T Consensus       118 ~p~V~~Av~~q~~~---~~~~~~~-~~~~~~Lae~L~~~~----p---~~~~v~~~nSGseA~~~Aik~ar~~t--gr~~  184 (465)
T 2yky_A          118 HPVIRAAVERALAV---GLNLSTQ-TENEALFAEAVCDRF----P---SIDLVRFTNSGTEANLMALATATAIT--GRKT  184 (465)
Confidence            68899999888877   2233343 233355666666655    2   35789999999999999998864311  1338


Q ss_pred             EEEcCCCChhHHHHHH----hcCC--EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-CCCHHH
Q psy13922        107 VLIPIPQYPLYSASLA----EFNM--EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ-VLTKEN  179 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-~~s~~~  179 (509)
                      |++..++|+++...+.    ..|+  .++.++.       .|++.|++.+++..  .++++|+++..+|++|. ..++++
T Consensus       185 ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~--~~~aavi~epv~~~~G~~~~~~~~  255 (465)
T 2yky_A          185 VLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHG--HDCAAILVEPMLGAGGCVPAERAF  255 (465)
Confidence            9999999998765443    1233  2222221       27889999887421  16888888655666996 556899


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|.++|++||+++|+||+|. |..+   ........  .+.        .-+.||||.+ | .|+|+||++   ++++
T Consensus       256 l~~l~~l~~~~g~llI~DEv~~-~r~g---~~~a~~~~--gv~--------pDi~t~sK~l-g-~G~piG~v~---~~~~  316 (465)
T 2yky_A          256 LDLLRAEASRCGALLIFDEVMT-SRLS---GGGAQEML--GIS--------ADLTTLGKYI-G-GGMSFGAFG---GRRD  316 (465)
Confidence            9999999999999999999999 7332   11111111  111        1134889999 6 599999998   7899


Q ss_pred             HHHHHHH
Q psy13922        260 VKAMLHK  266 (509)
Q Consensus       260 ~~~~l~~  266 (509)
                      +++.+..
T Consensus       317 i~~~l~~  323 (465)
T 2yky_A          317 LMERFDP  323 (465)
Confidence            9998876

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.84  E-value=2.2e-19  Score=185.65  Aligned_cols=199  Identities=18%  Similarity=0.205  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHhc---ccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE---eCCHHHHHHHHHHHhhcCCC
Q psy13922         28 DDVKQRAQAVLDG---CRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL---SAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        28 ~~v~~a~~~~l~~---~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd  101 (509)
                      .+|++++.+....   ........|+. .|...|++.+|++++        .+..++   ++|+++|+..++.+++++||
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~-~~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~~GD  102 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPSTGYGYDD-EGRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGILRPDD  102 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCCTTCTTC-HHHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHhhhhhhccCCCcCCCCCh-hHHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhcCCCC
Confidence            4566666655422   11222233554 356789999998883        344555   88999999999999999998


Q ss_pred             CCCCeEEEcC-CCChhHHHH----------HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC----
Q psy13922        102 GKKPGVLIPI-PQYPLYSAS----------LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN----  166 (509)
Q Consensus       102 ~~~~~Vlv~~-p~y~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~----  166 (509)
                          +|+++. |.|..+...          ++..|+++..++.+++  +.+|++.+++++++     ++++|++++    
T Consensus       103 ----~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~--g~~d~e~l~~ai~~-----~tklV~i~~s~g~  171 (409)
T 3jzl_A          103 ----ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLEN--GDVDFPRIAKKMTP-----KTKMIGIQRSRGY  171 (409)
T ss_dssp             ----EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTT--SCCCHHHHHHHCCT-----TEEEEEEECSCTT
T ss_pred             ----EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCC--CCcCHHHHHHhccC-----CCeEEEEECCCCC
Confidence                999998 999998754          4667999999998754  57899999999976     799999998    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHH--CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        167 PGNPTGQVLTKENIQDIIKFAHR--EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       167 p~NPtG~~~s~~~l~~l~~ia~~--~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      |+||||.+   .++++|+++|++  +|+++|+|++|..+.+...  ...       .+      ..++++|+||.+ |.+
T Consensus       172 p~nptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~--p~~-------~g------~Div~~S~sK~l-gg~  232 (409)
T 3jzl_A          172 ADRPSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQE--PPE-------VG------ADIIAGSLIKNP-GGG  232 (409)
T ss_dssp             SSSCCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCC--SGG-------GT------CSEEEEETTSGG-GTT
T ss_pred             CCCCcCcc---ccHHHHHHHHHhhCCCCEEEEeCCcccccccCC--ccc-------cC------CeEEEECccccC-Ccc
Confidence            99999987   569999999999  9999999999998764321  111       11      146678999999 545


Q ss_pred             C-CeeEEEeeecCCHHHHHHHHHhh
Q psy13922        245 G-LRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       245 G-lr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                      | .+.||++   +++++++++....
T Consensus       233 ~~~~GG~v~---~~~~li~~l~~~~  254 (409)
T 3jzl_A          233 LAKTGGYIA---GKEALVDLCGYRL  254 (409)
T ss_dssp             TCSSCEEEE---ECHHHHHHHHHHH
T ss_pred             CCceEEEEE---eCHHHHHHHHHHh
Confidence            5 4578887   7899999998754

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.83  E-value=8.3e-19  Score=182.11  Aligned_cols=199  Identities=18%  Similarity=0.145  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHhcc---cCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEE---eCCHHHHHHHHHHHhhcCCC
Q psy13922         28 DDVKQRAQAVLDGC---RGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL---SAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        28 ~~v~~a~~~~l~~~---~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~gd  101 (509)
                      +.|++++.+.....   .......|+.. |...+++.++++++        .+..++   ++|+++|+..++.+++++||
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-g~~~Le~~lA~l~g--------~e~alv~p~~~sGt~A~~~al~all~pGD  117 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTNSSGYGYNDI-GRDSLDRVYANIFN--------TESAFVRPHFVNGTHAIGAALFGNLRPND  117 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCcCCCCCch-hHHHHHHHHHHHhC--------CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence            45566655543321   11122225443 67889999998883        344456   78889999999999999999


Q ss_pred             CCCCeEEEcC-CCChhHHH-----------HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHh-hhccCCceEEEEeC--
Q psy13922        102 GKKPGVLIPI-PQYPLYSA-----------SLAEFNMEQIGYYLDESKQWGLPISELERSITE-ARKHCNPRAIVIIN--  166 (509)
Q Consensus       102 ~~~~~Vlv~~-p~y~~~~~-----------~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~-~~~~~~~~~ivi~~--  166 (509)
                          +|+++. |.|.++..           .++..|++++.++. +  ++.+|++.+++++++ .    ++++|++++  
T Consensus       118 ----~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~--~~~~d~e~l~~~i~~~~----~tklV~i~~s~  186 (427)
T 3hvy_A          118 ----TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-K--DGKVDINTVKEELKKDD----SIKLIHIQRST  186 (427)
T ss_dssp             ----EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-B--TTBCCHHHHHHHHHHCT----TEEEEEEESSC
T ss_pred             ----EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-C--CCCcCHHHHHHHhhCCC----CCEEEEEECCC
Confidence                999998 99998773           34567999999988 3  358899999999983 2    799999988  


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHHH--CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        167 --PGNPTGQVLTKENIQDIIKFAHR--EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       167 --p~NPtG~~~s~~~l~~l~~ia~~--~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                        |+||||.+   .++++|+++|++  +|+++|+|++|..+.+...    +.     +.+      ..++++|+||.+ |
T Consensus       187 gyp~nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~----p~-----~~g------aDiv~~S~sK~l-g  247 (427)
T 3hvy_A          187 GYGWRKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE----PT-----DVG------ADIIAGSLIKNI-G  247 (427)
T ss_dssp             CSSSSCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC----GG-----GGT------CSEEEEETTSGG-G
T ss_pred             CCCCCccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCC----Cc-----ccC------CeEEEECCcccc-c
Confidence              99999877   679999999999  8999999999988764321    11     111      146688999999 4


Q ss_pred             CCC-CeeEEEeeecCCHHHHHHHHHhh
Q psy13922        243 ECG-LRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       243 ~~G-lr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                      ..| .++||++   ++++++++++...
T Consensus       248 g~g~~~GG~i~---~~~~li~~l~~~~  271 (427)
T 3hvy_A          248 GGIATTGGYIA---GKEEYVTQATFRV  271 (427)
T ss_dssp             TTTCCSCEEEE---ECHHHHHHHHHHH
T ss_pred             ccccceEEEEE---ECHHHHHHHHHHh
Confidence            344 5678887   7899999998754

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.83  E-value=1.5e-19  Score=188.41  Aligned_cols=181  Identities=18%  Similarity=0.175  Sum_probs=138.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcC-CCChhHHHHH----------HhcCCE
Q psy13922         59 RRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPI-PQYPLYSASL----------AEFNME  127 (509)
Q Consensus        59 r~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-p~y~~~~~~~----------~~~g~~  127 (509)
                      ++++++.+.+.+|.+....+++++ ++++|+..++.+++++||    .|+++. |.|..+...+          +..|++
T Consensus        67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd----~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~  141 (431)
T 3ht4_A           67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGD----ELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIG  141 (431)
T ss_dssp             HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTC----EEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCE
T ss_pred             HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCC----EEEEeCCCCchhHHHHHhhcccccchHHHcCCE
Confidence            444444444444533222233355 668999999999999998    999998 9999988655          457999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHH--CCcEEEEcccCCccc
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHR--EKLFLFADEVYQDNV  204 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~-~p~NPtG~~~s~~~l~~l~~ia~~--~~i~lI~Deay~~~~  204 (509)
                      ++.++.+++  +.+|++.|++++++     ++++|+++ +||||+|...+.+++++|+++|++  +|+++|+|++|..+.
T Consensus       142 ~~~v~~~~~--~~~d~e~l~~~l~~-----~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~  214 (431)
T 3ht4_A          142 YNAVPLTEG--GLVDFEAVAAAIHS-----NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI  214 (431)
T ss_dssp             EEECCBCTT--SSBCHHHHHHHCCT-----TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred             EEEeCCCCC--CCcCHHHHHhhcCC-----CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence            999998764  58899999999986     79999998 699999999999999999999999  999999999999987


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      +...  ...       .+.      .++++|+||.+.|..+...||++   .++++++.+.....
T Consensus       215 ~~~~--~~~-------~g~------Di~~~S~sK~lgg~~~~~GG~v~---~~~~li~~l~~~~~  261 (431)
T 3ht4_A          215 EEQE--PCH-------VGA------DLMAGSLIKNPGGGIVKTGGYIV---GKEQYVEACAYRLT  261 (431)
T ss_dssp             SSCC--GGG-------TTC------SEEEEETTSGGGTTTCSSCEEEE---ECHHHHHHHHHHHS
T ss_pred             cCCC--ccc-------cCC------eEEEcCccccCCCCCCCceEEEE---ecHHHHHHHHHHhc
Confidence            5421  111       111      36678999997321224559998   78999999877544

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.83  E-value=3.2e-19  Score=196.33  Aligned_cols=179  Identities=15%  Similarity=0.117  Sum_probs=127.2

Q ss_pred             CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH-HHhcCCEEE
Q psy13922         51 DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS-LAEFNMEQI  129 (509)
Q Consensus        51 ~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~-~~~~g~~~~  129 (509)
                      +..-..++++.+|++++      . ...+++++|+++++..++.+++++||    .|+++.|+|.++... +...|++++
T Consensus       171 ~~~~i~e~e~~lA~~~g------a-e~~i~v~nGtt~an~~ai~al~~pGD----~VLv~~~~H~S~~~~~~~l~Ga~~v  239 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYN------A-DKTYFVLGGSSNANNTVTSALVSNGD----LVLFDRNNHKSVYNSALAMAGGRPV  239 (730)
T ss_dssp             TBTHHHHHHHHHHHHTT------C-SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             ChHHHHHHHHHHHHHHC------C-CcEEEECCHHHHHHHHHHHHhcCCCC----EEEEcCCchHHHHHHHHHHCCCEEE
Confidence            33445789999998883      2 24588899999999999999999998    999999999998888 888899999


Q ss_pred             EEecCCCCCCC----CCHHHH-----HHHHHhh-hc---cCCc-eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEE
Q psy13922        130 GYYLDESKQWG----LPISEL-----ERSITEA-RK---HCNP-RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF  195 (509)
Q Consensus       130 ~v~~~~~~~~~----~d~~~L-----~~~i~~~-~~---~~~~-~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI  195 (509)
                      .++.+.+ .|+    +|++.|     ++++++. .+   ..++ +++++++| ||+|.+.+   +++|+++|+++|+++|
T Consensus       240 ~v~~~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~li  314 (730)
T 1c4k_A          240 YLQTNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIE  314 (730)
T ss_dssp             EECEEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEE
T ss_pred             EEeCCcc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEE
Confidence            8876532 334    688888     7777652 00   0012 89999998 58999976   8999999999999999


Q ss_pred             EcccCCcc-cccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee-EEE
Q psy13922        196 ADEVYQDN-VYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG-GYS  251 (509)
Q Consensus       196 ~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~-G~v  251 (509)
                      +|++|... .+.+..+..+.... ...+.+  +.+++++.|+||.+   +|++. |++
T Consensus       315 vDeAh~~~~~f~~~~~g~~~l~~-~~~g~D--~~~~iv~~S~hK~L---~g~~~gg~I  366 (730)
T 1c4k_A          315 FDSAWVGYEQFIPMMRNSSPLLI-DDLGPE--DPGIIVVQSVHKQQ---AGFSQTSQI  366 (730)
T ss_dssp             EECTTCCGGGSSGGGGGGCTTSC-CCCCTT--SCEEEEEECHHHHS---SCCTTCEEE
T ss_pred             EEcccccccccCcccCCcCcccc-cccCCC--CCCEEEEECCCCCC---CCCCCEEEE
Confidence            99999753 23211000000000 001111  33578899999987   45554 455

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.82  E-value=1.2e-19  Score=191.51  Aligned_cols=178  Identities=10%  Similarity=-0.027  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-------
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-------   98 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------   98 (509)
                      -+|.|++++.+++..........|+. ....++++++++.+.+..+  ...++|++++|+++|+..+++.++.       
T Consensus        80 ~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~  156 (472)
T 1ohv_A           80 SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKER  156 (472)
T ss_dssp             TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCchhHHHHHHHHHHHHhhhhcc
Confidence            37899999988765311001112432 2346799999997766543  3567999999999999999998841       


Q ss_pred             ------------------CCCCCCCeEEEcCCCChhHHHHHHhc-CCE-------------EEEEecCCCC---C--C--
Q psy13922         99 ------------------DVDGKKPGVLIPIPQYPLYSASLAEF-NME-------------QIGYYLDESK---Q--W--  139 (509)
Q Consensus        99 ------------------~gd~~~~~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~v~~~~~~---~--~--  139 (509)
                                        +|. +++.|++.++.|+++...+... |..             .+.+|.....   .  +  
T Consensus       157 ~~~~~t~~~~~~~~~~~~~g~-~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  235 (472)
T 1ohv_A          157 GQSAFSKEELETCMINQAPGC-PDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQ  235 (472)
T ss_dssp             TTCCCCHHHHHHHHTTCTTTS-CCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHH
T ss_pred             CcccccccccccccccccccC-CCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccch
Confidence                              230 1359999999999876555322 221             1122211000   0  0  


Q ss_pred             ---CCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        140 ---GLPISELERSITEARKH-CNPRAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       140 ---~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                         ..|++.|++.+++.... .++++|+++..+|++|. ..+++++++|.++|++||+++|+||+|.+|.+.+
T Consensus       236 ~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g  308 (472)
T 1ohv_A          236 QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG  308 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC
Confidence               12578888888763221 25788888777888996 6789999999999999999999999999876653

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.80  E-value=5.7e-18  Score=187.82  Aligned_cols=177  Identities=15%  Similarity=0.140  Sum_probs=129.7

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEe
Q psy13922         53 PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY  132 (509)
Q Consensus        53 ~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~  132 (509)
                      .-..++++.+++++    |  . .+.+++++|+++++..++.+++++||    .|+++.|+|.++...+...|++++.++
T Consensus       205 g~v~~~ee~la~l~----G--~-d~~i~~~~Gtt~a~~~~i~al~~~GD----~Vlv~~~~h~s~~~~~~~~G~~~v~v~  273 (755)
T 2vyc_A          205 GAFGESEKYAARVF----G--A-DRSWSVVVGTSGSNRTIMQACMTDND----VVVVDRNCHKSIEQGLMLTGAKPVYMV  273 (755)
T ss_dssp             HHHHHHHHHHHHHH----T--C-SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHHCCEEEEEC
T ss_pred             cHHHHHHHHHHHHh----C--C-CceEEECCcHHHHHHHHHHHhcCCCC----EEEECCCchHHHHHHHHHcCCEEEEEe
Confidence            34567788888877    3  1 24688899999999999999999998    999999999999999999999999998


Q ss_pred             cCCCCCCC----C-----CHHHHHHHHHhhh-----ccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc
Q psy13922        133 LDESKQWG----L-----PISELERSITEAR-----KHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE  198 (509)
Q Consensus       133 ~~~~~~~~----~-----d~~~L~~~i~~~~-----~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~De  198 (509)
                      .+.+ +|+    +     |++.|++++++..     ...+++++++++| ||+|.+.+   +++|+++|+++|+++|+|+
T Consensus       274 ~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDe  348 (755)
T 2vyc_A          274 PSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDE  348 (755)
T ss_dssp             CCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEEC
T ss_pred             CCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEEC
Confidence            7643 333    4     9999999997621     1123458999998 79999977   8999999999999999999


Q ss_pred             cCCccc-ccCCC-ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe-eEEEe
Q psy13922        199 VYQDNV-YAEGS-KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR-GGYSE  252 (509)
Q Consensus       199 ay~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr-~G~v~  252 (509)
                      +|.... +.+.. ...++  .. + ..+....++|++.|+||.+   +|.+ .|+++
T Consensus       349 A~~~~~~~~~~~~~~~~~--~g-~-~aD~~~~~~iv~~S~hK~L---~g~~~g~~i~  398 (755)
T 2vyc_A          349 AWYGYARFNPIYADHYAM--RG-E-PGDHNGPTVFATHSTHKLL---NALSQASYIH  398 (755)
T ss_dssp             TTCTTGGGCGGGTTSSSS--CS-C-CCCCSSBEEEEEEETTTSS---SCCTTCEEEE
T ss_pred             cCchhcccCcccCCcchh--cC-C-cCCccCCCeEEEECccccc---cCcCCeeeee
Confidence            997532 22100 01111  00 0 0111234678899999987   4555 45554

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.76  E-value=8.2e-18  Score=175.38  Aligned_cols=199  Identities=10%  Similarity=0.040  Sum_probs=136.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++++   .... ..+..-..++.+.+++.+    .   ..+.|+++++++||...+++..+....  ++.
T Consensus       105 hp~v~~Av~~q~~~---~~~~-~~~~~~~~~lae~l~~~~----p---~~~~v~f~~SGsEA~e~AiklAr~~tg--r~~  171 (454)
T 4ao9_A          105 APEIRDAVIEAMQG---GINL-TGHNLLEGRLARLICERF----P---QIEQLRFTNSGTEANLMALTAALHFTG--RRK  171 (454)
T ss_dssp             CHHHHHHHHHHHHT---CSCC-CSEESSHHHHHHHHHHHS----T---TCSEEEEESSHHHHHHHHHHHHHHHHT--CCE
T ss_pred             CHHHHHHHHHHHhc---CCCc-cCCcHHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHHHHHHHHHhccc--CCe
Confidence            68999999999987   2222 122223355666666655    2   357899999999999999998865432  458


Q ss_pred             EEEcCCCChhHHHHHHhc------CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-CCCHHH
Q psy13922        107 VLIPIPQYPLYSASLAEF------NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ-VLTKEN  179 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~------g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-~~s~~~  179 (509)
                      |+....+|++....+...      ......+|.       -|++.+++.+++...  ++.+|++.......|. ..+++.
T Consensus       172 ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~--~iAavIvEPv~g~~G~~~p~~~f  242 (454)
T 4ao9_A          172 IVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGP--EIAVVLVEPMQGASGCIPGQPDF  242 (454)
T ss_dssp             EEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGG--GEEEEEECSEESTTTCEECCHHH
T ss_pred             EEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCC--ceEEEEeccccCCCCccCCchhh
Confidence            999999998854322111      122233221       278999999986432  5778888655666675 667899


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      |++|.++|++||+++|+||++..  ..+  .......  ..+.++     +   .+++|.+ | .|+++|.++   +.++
T Consensus       243 L~~lr~lc~~~g~lLI~DEV~tG--R~G--~~~a~e~--~gv~PD-----i---~t~gK~l-g-gG~Piga~~---~~~e  303 (454)
T 4ao9_A          243 LQALRESATQVGALLVFDEVMTS--RLA--PHGLANK--LGIRSD-----L---TTLGKYI-G-GGMSFGAFG---GRAD  303 (454)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTGG--GGS--TTCHHHH--HTCCCS-----E---EEEEGGG-G-TTSSCEEEE---ECHH
T ss_pred             HHHHHHHHhhcCCEEEEECCCcC--CCc--cccchhc--cCCCCc-----E---EEecccc-C-CCCcceeee---eHHH
Confidence            99999999999999999999974  222  1112111  223332     3   3679999 5 899999998   7999


Q ss_pred             HHHHHHH
Q psy13922        260 VKAMLHK  266 (509)
Q Consensus       260 ~~~~l~~  266 (509)
                      +++.+..
T Consensus       304 i~~~~~~  310 (454)
T 4ao9_A          304 VMALFDP  310 (454)
T ss_dssp             HHGGGCT
T ss_pred             HHHHHhh
Confidence            9987753

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=169.99  Aligned_cols=332  Identities=13%  Similarity=0.084  Sum_probs=203.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcc-----cCCC--CcchHHHHHHHHHHHhhhcCCCCCC-CcEEE-eCCHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVG-----SYTD--SPGIEIIRRHVAQYISRRDGQPADW-QDVIL-SAGASDGIKSV   92 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~-----~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~-~~i~~-t~G~~~al~~~   92 (509)
                      .....|+.|++++.+.+....+...+     +.++  ..-+.+.|+.+++++    +  .+. ++|++ |+|+|++++++
T Consensus        20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~--~~~~~evif~t~~~T~a~n~a   93 (377)
T 3e77_A           20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL----A--VPDNYKVIFLQGGGCGQFSAV   93 (377)
T ss_dssp             CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----T--CCTTEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----C--CCCCCeEEEEcCchHHHHHHH
Confidence            35567999999999988753321111     1111  123456777777777    4  333 57888 58999999999


Q ss_pred             HHHhhcC--CCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         93 LKLLIED--VDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        93 ~~~l~~~--gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      +..+..+  ||    +|++..-.+.+  +...++..|..++.++.+..  +..+++.++..+++     ++++|.+++..
T Consensus        94 ~~~l~~~~~Gd----~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~--~~~~~~~~~~~i~~-----~t~lV~~~h~e  162 (377)
T 3e77_A           94 PLNLIGLKAGR----CADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS--YTKIPDPSTWNLNP-----DASYVYYCANE  162 (377)
T ss_dssp             HHHHGGGSTTC----EEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS--SCSCCCGGGCCCCT-----TCSCEEEESEE
T ss_pred             HHhccCCCCCC----eEEEEECCHHHHHHHHHHHHhCCceEEeccCCC--cCCCCChHHhccCC-----CccEEEEeCcc
Confidence            9999875  67    88776655554  34556777887777666533  35566666555554     79999999889


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        169 NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       169 NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      |.||+..|.        +|+++|+++++|.+++....     ...+..           ..++ +.|..|.+ |.+|+  
T Consensus       163 t~tG~~~pi--------i~~~~~~~~~vD~~q~~g~~-----~id~~~-----------~~~~-~~s~~K~~-gp~G~--  214 (377)
T 3e77_A          163 TVHGVEFDF--------IPDVKGAVLVCDMSSNFLSK-----PVDVSK-----------FGVI-FAGAQKNV-GSAGV--  214 (377)
T ss_dssp             TTTTEECSS--------CCCCTTCCEEEECTTTTTSS-----CCCGGG-----------CSEE-EEEGGGTT-SCTTC--
T ss_pred             CchheEchh--------hhccCCCEEEEEcccccCCC-----CCchhh-----------cCEE-EEeccccc-CCCcc--
Confidence            999999883        46789999999999986432     122221           1254 45779999 88886  


Q ss_pred             EEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      |++.+   ++++.+.+...     .+..+               + +..........+++...+..++..+++       
T Consensus       215 g~l~~---~~~~l~~~~~~-----~p~~~---------------~-~~~~~~~~~~~~Tp~v~~i~~l~~al~-------  263 (377)
T 3e77_A          215 TVVIV---RDDLLGFALRE-----CPSVL---------------E-YKVQAGNSSLYNTPPCFSIYVMGLVLE-------  263 (377)
T ss_dssp             EEEEE---ETTSCSCCCTT-----SCGGG---------------C-HHHHHTTTTCSSCCCHHHHHHHHHHHH-------
T ss_pred             EEEEE---cHHHHhhccCC-----CCchh---------------h-HHHHhhcCCCCCCchHHHHHHHHHHHH-------
Confidence            44442   33332221100     00000               0 000000000011222224455555433       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc----CCceeEEeecCCCCHHHHHHHhhcCCCCc----HHHHHH
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP----VQGAMYAFPQMKLPAKAIAKAKAEGKCPS----VLYAFE  400 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~  400 (509)
                       |-....-++.+.++.+++.+++.+.|.++||+.+.+    ..++..+.+.++            ++.++    ..++ .
T Consensus       264 -~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~------------~~~~~~~~~~~~l-~  329 (377)
T 3e77_A          264 -WIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG------------NAKGDDALEKRFL-D  329 (377)
T ss_dssp             -HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES------------STTCCHHHHHHHH-H
T ss_pred             -HHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC------------CCCCchhHHHHHH-H
Confidence             111110267888899999999999999998887432    133444444444            33221    2233 3


Q ss_pred             HHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEE
Q psy13922        401 LLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFR  480 (509)
Q Consensus       401 ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R  480 (509)
                      .+.++||.+++|...                                                  .+          .+|
T Consensus       330 ~l~~~Gi~~~~g~~~--------------------------------------------------~g----------~iR  349 (377)
T 3e77_A          330 KALELNMLSLKGHRS--------------------------------------------------VG----------GIR  349 (377)
T ss_dssp             HHHHTTEESCBCCTT--------------------------------------------------TC----------SEE
T ss_pred             HHHHCCcEEeCCCCc--------------------------------------------------CC----------EEE
Confidence            445789998876521                                                  12          699


Q ss_pred             EEee--cChHHHHHHHHHHHHHHHH
Q psy13922        481 TTIL--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       481 ls~~--~~~~~i~~~~~~l~~~~~~  503 (509)
                      +|+.  +++++++.+++.|++++++
T Consensus       350 iS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          350 ASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9998  7999999999999988765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.74  E-value=6.6e-17  Score=164.23  Aligned_cols=329  Identities=14%  Similarity=0.100  Sum_probs=200.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCccc----C-CC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEE-eCCHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGS----Y-TD--SPGIEIIRRHVAQYISRRDGQPADWQDVIL-SAGASDGIKSVL   93 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~----Y-~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~-t~G~~~al~~~~   93 (509)
                      |+..+|+.|++++.+.+....+...+-    + ++  ..-+.+.|+.+++++    |.+ ++++|++ |+|+|+++++++
T Consensus        12 gpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~~~-~~~~v~f~t~~~T~a~n~~~   86 (361)
T 3m5u_A           12 GPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY----ELN-DDYEVLFLQGGASLQFAMIP   86 (361)
T ss_dssp             SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEEcCcHHHHHHHHH
Confidence            667789999999999887532111110    1 11  123456777777777    321 2457888 999999999999


Q ss_pred             HHhhcCCCCCCCeE--EEcCCCCh-hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         94 KLLIEDVDGKKPGV--LIPIPQYP-LYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        94 ~~l~~~gd~~~~~V--lv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                      ..+. ++|    ++  ++.. .|. .+...++..|+++..++.+.++.+.++++. +  +++     ++++|.+++..|.
T Consensus        87 ~~~~-~~~----~~~~i~~~-~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~-----~t~lv~~~~~e~~  152 (361)
T 3m5u_A           87 MNLA-LNG----VCEYANTG-VWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD-----NADYAYICSNNTI  152 (361)
T ss_dssp             HHHC-CSS----CEEEEECS-HHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT-----TSSEEEEESEETT
T ss_pred             HhcC-CCC----eEEEEeCC-HHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC-----CCCEEEEeCCCCC
Confidence            9998 665    44  3332 222 345566778999999998876433245555 3  555     7999999988999


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEE
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY  250 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~  250 (509)
                      ||+.++.        +++ +|+++++|.+++....     ...+.           ..++++ .|..|.+ |.+|+  |+
T Consensus       153 tG~~~~~--------i~~-~~~~~~vD~~q~~g~~-----~id~~-----------~~d~~~-~s~~K~~-gp~G~--g~  203 (361)
T 3m5u_A          153 YGTQYQN--------YPK-TKTPLIVDASSDFFSR-----KVDFS-----------NIALFY-GGVQKNA-GISGL--SC  203 (361)
T ss_dssp             TTEECSS--------CCC-CSSCEEEECGGGTTSS-----CCCCT-----------TEEEEE-EETTTTS-SCTTC--EE
T ss_pred             cceeCCc--------ccc-cCCEEEEEcccccCCC-----CCCcc-----------cCCEEE-Eechhcc-CCCcc--EE
Confidence            9998762        333 4999999999876332     11211           122554 4889999 88885  55


Q ss_pred             EeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCch
Q psy13922        251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSY  330 (509)
Q Consensus       251 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  330 (509)
                      ++   .++++.+.+....    .+.....                ..........+++...+..++..+++         
T Consensus       204 l~---~~~~~~~~~~~~~----~p~~~~~----------------~~~~~~~~~~~Tp~v~~i~~l~~al~---------  251 (361)
T 3m5u_A          204 IF---IRKDMLERSKNKQ----IPSMLNY----------------LTHAENQSLFNTPPTFAIYMFNLEMD---------  251 (361)
T ss_dssp             EE---EEHHHHHHHHTCC----CCGGGCH----------------HHHHHTTTCSSCCCHHHHHHHHHHHH---------
T ss_pred             EE---EcHHHHhhhcCCC----CCceeeh----------------HHHhhcCCCCCCccHHHHHHHHHHHH---------
Confidence            55   3777777665310    0111000                00000000112222224444444432         


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCC-eecc-C--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        331 EQFSRE--KQSVLDSLKQRAKMVADTFNSIEGM-SCNP-V--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       331 ~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~-~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                       ...+.  ++.+.++.+++.+++.+.|.+++++ .... +  .+...+.+.++  .         +...+..+ ...|++
T Consensus       252 -~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~--~---------~~~~~~~~-~~~L~~  318 (361)
T 3m5u_A          252 -WLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIA--K---------NKDLEPLF-VKEAEE  318 (361)
T ss_dssp             -HHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEES--S---------CTTHHHHH-HHHHHH
T ss_pred             -HHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECC--C---------chhhhHHH-HHHHHH
Confidence             11112  6788889999999999999999766 4432 1  22333333343  1         00012233 466788


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      +||.+.+|...                                                  .+          .+|+|+.
T Consensus       319 ~gI~~~~g~~~--------------------------------------------------~g----------~iRiS~~  338 (361)
T 3m5u_A          319 AGMIGLKGHRI--------------------------------------------------LG----------GIRASIY  338 (361)
T ss_dssp             TTEECCBCCTT--------------------------------------------------TC----------SEEEECC
T ss_pred             CCCEEecCCCc--------------------------------------------------cC----------eEEEEcc
Confidence            89998876521                                                  12          5999998


Q ss_pred             --cChHHHHHHHHHHHHHHHH
Q psy13922        485 --PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       485 --~~~~~i~~~~~~l~~~~~~  503 (509)
                        ++.++|+.+++.|+++.++
T Consensus       339 ~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          339 NALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence              6999999999998888764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.73  E-value=2.9e-17  Score=168.35  Aligned_cols=329  Identities=13%  Similarity=0.074  Sum_probs=196.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC-----cccCCC--CcchHHHHHHHHHHHhhhcCCCCC-CCcEEE-eCCHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS-----VGSYTD--SPGIEIIRRHVAQYISRRDGQPAD-WQDVIL-SAGASDGIKSV   92 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~-----~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~-~~~i~~-t~G~~~al~~~   92 (509)
                      ++..+|+.|++++.+.+.+..+..     .++.+.  ..-+.+.|+.++++++      .+ +++|++ |+|+|++++++
T Consensus        34 gpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a  107 (386)
T 3qm2_A           34 GPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGV  107 (386)
T ss_dssp             SSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHH
Confidence            556689999999987775422111     111111  3456789999999994      33 247888 69999999999


Q ss_pred             HHHhhcCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecC--CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCC
Q psy13922         93 LKLLIEDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLD--ESKQWGLPISELERSITEARKHCNPRAIVIINPG  168 (509)
Q Consensus        93 ~~~l~~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~  168 (509)
                      +..+.++||    +|++..-.+.+  +...++..| ++..++.+  +. +..++++.++..+++     ++++|.+++..
T Consensus       108 i~~l~~~gd----~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~-G~~~~~~~~~~~l~~-----~t~lV~~~h~e  176 (386)
T 3qm2_A          108 PLNLLGDKT----TADYVDAGYWAASAIKEAKKYC-APQIIDAKITVD-GKRAVKPMREWQLSD-----NAAYLHYCPNE  176 (386)
T ss_dssp             HHHHCTTCC----EEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEET-TEEEECCGGGCCCCT-----TCSCEEECSEE
T ss_pred             HHhccCCCC----eEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccC-CCCCCchHHHhhcCC-----CCcEEEEECCc
Confidence            999988887    77654433333  455567778 88888876  33 222567777766665     79999899888


Q ss_pred             CCCCCC-CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        169 NPTGQV-LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       169 NPtG~~-~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      |.||+. .+   +++|.     +|+++++|.+++....     ...+..           ..+++ .|..|.+ |++|+ 
T Consensus       177 t~tG~~i~p---i~~i~-----~g~~~~vDa~qs~g~~-----pidv~~-----------~~~~~-~s~hK~l-GP~G~-  229 (386)
T 3qm2_A          177 TIDGIAIDE---TPDFG-----PEVVVTADFSSTILSA-----PLDVSR-----------YGVIY-AGAQKNI-GPAGL-  229 (386)
T ss_dssp             TTTTEECCC---CCCCC-----TTCCEEEECTTTTTSS-----CCCGGG-----------CSEEE-EETTTTT-CCTTE-
T ss_pred             CCcCEecCc---hhhhc-----CCCEEEEEcccccCCC-----CCCccc-----------cCEEE-Eeccccc-CCCcc-
Confidence            999996 66   44443     7999999999876332     222221           12544 5889999 88885 


Q ss_pred             eEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                       |++.+   ++++.+.+....     +...         +   |    ..........++++..+..++..+++      
T Consensus       230 -g~l~v---~~~~~~~~~~~~-----p~~~---------~---~----~~~~~~~~~~gTp~v~~i~~l~~Al~------  278 (386)
T 3qm2_A          230 -TLVIV---REDLLGKAHESC-----PSIL---------D---Y----TVLNDNDSMFNTPPTFAWYLSGLVFK------  278 (386)
T ss_dssp             -EEEEE---EGGGCSCCCTTS-----CGGG---------C---H----HHHHHC-------CCSHHHHHHHHHH------
T ss_pred             -EEEEE---CHHHHhhhcccC-----CcHH---------H---H----HHHhhcCCCCCCCcHHHHHHHHHHHH------
Confidence             55552   444433221100     0000         0   0    00000001112333335555655543      


Q ss_pred             CchHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCC-eec-c--CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHH
Q psy13922        328 PSYEQFSRE--KQSVLDSLKQRAKMVADTFNSIEGM-SCN-P--VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL  401 (509)
Q Consensus       328 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~-~~~-~--~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  401 (509)
                          ...+.  ++.+.++.+++++++.+.|+++ ++ ... .  ..+...+.+.++-+          ++  +..++ ..
T Consensus       279 ----~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~----------~~--~~~~~-~~  340 (386)
T 3qm2_A          279 ----WLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADN----------TL--DKVFL-EE  340 (386)
T ss_dssp             ----HHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSG----------GG--HHHHH-HH
T ss_pred             ----HHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCc----------cc--cHHHH-HH
Confidence                12222  6788889999999999999988 54 221 1  12333444334310          11  23333 34


Q ss_pred             HhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEE
Q psy13922        402 LERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRT  481 (509)
Q Consensus       402 l~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rl  481 (509)
                      |+++||.+++|..+.                                                  +          .+|+
T Consensus       341 L~~~gI~~~~g~~~~--------------------------------------------------~----------~iRi  360 (386)
T 3qm2_A          341 SFAAGLHALKGHRVV--------------------------------------------------G----------GMRA  360 (386)
T ss_dssp             HHHTTEECCBCCTTT--------------------------------------------------C----------SEEE
T ss_pred             HHHCCCEEeCCCCCc--------------------------------------------------C----------eEEE
Confidence            778899988765221                                                  1          5999


Q ss_pred             Eee--cChHHHHHHHHHHHHHHHH
Q psy13922        482 TIL--PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       482 s~~--~~~~~i~~~~~~l~~~~~~  503 (509)
                      |+.  +++++|+.+++.|+++.++
T Consensus       361 S~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          361 SIYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHh
Confidence            998  6899999999999888765

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.72  E-value=1.8e-16  Score=173.21  Aligned_cols=178  Identities=13%  Similarity=0.087  Sum_probs=126.6

Q ss_pred             CCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEE
Q psy13922         50 TDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI  129 (509)
Q Consensus        50 ~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~  129 (509)
                      .+..-..++++.+|++++       ....+++++|++.++..++.+++++||    .|+++.++|.++...+...|++++
T Consensus       192 ~~~g~i~eaE~~lA~~fG-------a~~a~~v~nGts~An~~ai~al~~pGD----~VLv~r~~H~S~~~~l~lsGa~pv  260 (715)
T 3n75_A          192 DHSGPHKEAEQYIARVFN-------ADRSYMVTNGTSTANKIVGMYSAPAGS----TILIDRNCHKSLTHLMMMSDVTPI  260 (715)
T ss_dssp             TTBTHHHHHHHHHHHHHT-------CSEEEEESSHHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHSCCEEE
T ss_pred             CCcHHHHHHHHHHHHHhC-------CCCceEECcHHHHHHHHHHHHhCCCCC----EEEECCCccHHHHHHHHHcCCEEE
Confidence            344455789999999984       224577788888999999999999999    999999999999999999999999


Q ss_pred             EEecCCCCCCCC---------CHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccC
Q psy13922        130 GYYLDESKQWGL---------PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY  200 (509)
Q Consensus       130 ~v~~~~~~~~~~---------d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay  200 (509)
                      .++.+.+ .|++         |++.|++++++..+...++++++++| ||+|.+++   +++|+++|++++  +++||+|
T Consensus       261 ~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH  333 (715)
T 3n75_A          261 YFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAW  333 (715)
T ss_dssp             EECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTT
T ss_pred             EEecccc-ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEcccc
Confidence            9987643 4554         89999999986311112348999999 99999988   777777887663  7999999


Q ss_pred             Cccc-ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCC-eeEEEee
Q psy13922        201 QDNV-YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGL-RGGYSEV  253 (509)
Q Consensus       201 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Gl-r~G~v~~  253 (509)
                      .... +++.  .+....+.  .+ ...+.-++++.|+||+++   |+ ..|++.+
T Consensus       334 ~~~~~f~~~--~~~~~al~--~g-~~aD~vii~~~S~hKtL~---gltqgs~i~v  380 (715)
T 3n75_A          334 VPYTNFSPI--YEGKCGMS--GG-RVEGKVIYETQSTHKLLA---AFSQASMIHV  380 (715)
T ss_dssp             CTTGGGSGG--GTTSSTTS--SS-CCTTCEEEEEECHHHHSS---CCTTCEEEEE
T ss_pred             ccccccCCc--cccccccc--cC-cCCCEEEEEEeccccccc---CCCCeeEEEe
Confidence            8653 3221  11000010  00 001222356889999983   44 3577763

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.67  E-value=1.8e-15  Score=158.15  Aligned_cols=230  Identities=12%  Similarity=0.057  Sum_probs=143.6

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++.+....... +.+.....++.+.+++..    . .-..+.++++++++||++.+++..+....  +..
T Consensus        82 ~p~v~~Ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~----p-~~~~~~v~f~~sGsEA~e~AlklAr~~t~--r~~  153 (456)
T 4atq_A           82 DPAVVAAVQEAAAHFTHTCFM-VTPYEGYVAVTEQLNRLT----P-GDHAKRTVLFNSGAEAVENAVKVARLATG--RDA  153 (456)
T ss_dssp             CHHHHHHHHHHHHHCSCCTTT-TSCCHHHHHHHHHHHHHS----S-CSSCEEEEEESSHHHHHHHHHHHHHHHHC--CCE
T ss_pred             CHHHHHHHHHHHhhccCcccC-ccCcHHHHHHHHHHHHhC----C-CCCCcEEEEeCChHHHHHHHHHHHhhhhc--CCe
Confidence            689999999998873211111 333343344555555443    1 01245799999999999999998765432  558


Q ss_pred             EEEcCCCChhHHHHHHhc-C-------------CEEEEEecCCC----CCCCCCHHHHHHHHHh---hhccCCceEEEEe
Q psy13922        107 VLIPIPQYPLYSASLAEF-N-------------MEQIGYYLDES----KQWGLPISELERSITE---ARKHCNPRAIVII  165 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g-------------~~~~~v~~~~~----~~~~~d~~~L~~~i~~---~~~~~~~~~ivi~  165 (509)
                      |+....+|++....+... +             ..+..+|....    ....-+.+.+++.++.   .....++.+|++.
T Consensus       154 ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivE  233 (456)
T 4atq_A          154 VVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIE  233 (456)
T ss_dssp             EEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEEC
T ss_pred             EEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEec
Confidence            999999999865443221 1             12444443211    0011234444444432   1111267888886


Q ss_pred             CCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        166 NPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       166 ~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      ..+.-.|. ..+++.+++|.++|++||+++|.||++.+|...|.  +.....+  ++.++     ++   +++|.+ | .
T Consensus       234 Piqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~--~~a~e~~--gv~PD-----iv---t~gK~l-g-g  299 (456)
T 4atq_A          234 PIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE--WFAVDHE--GVVPD-----II---TMAKGI-A-G  299 (456)
T ss_dssp             SSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT--TCCCS-----EE---EECGGG-G-T
T ss_pred             cccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc--ccccccc--CCCCc-----hh---hhhhcc-c-C
Confidence            55666675 67789999999999999999999999999876652  3232221  22222     33   668999 5 8


Q ss_pred             CCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        245 GLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       245 Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                      |+++|.++   ..+++++.+..... .+++.+.+++++
T Consensus       300 g~P~~av~---~~~~i~~~~~~~~~~~Tf~gnpla~aa  334 (456)
T 4atq_A          300 GLPLSAIT---GRADLLDAVHPGGLGGTYGGNPVACAA  334 (456)
T ss_dssp             TSSCEEEE---EEHHHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred             cCCceeeE---ecHHHHhcccccCCCCCCCCChHHHHh
Confidence            99999998   78888887754332 344555554444

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.65  E-value=1.9e-15  Score=158.63  Aligned_cols=217  Identities=15%  Similarity=0.094  Sum_probs=137.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~  102 (509)
                      +|.|.+++.+++.+....... +.   ...+....+|+.|.+..+  ...+.|+++++++||++.+++..+.    .|.+
T Consensus        85 ~p~v~~Ai~~q~~~l~~~~~~-~~---~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~  158 (473)
T 4e3q_A           85 HKGLIDAAKAQYERFPGYHAF-FG---RMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP  158 (473)
T ss_dssp             CHHHHHHHHHHHHHCCCCCCC-TT---EEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhccccccc-cc---ccCHHHHHHHHHHHhhCC--CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            689999999999883211111 11   112334445555544432  2346899999999999999998642    3433


Q ss_pred             CCCeEEEcCCCChhHHHHHHhcCC------------EEEEEecCCC---CCCCCC--------HHHHHHHHHhhhccCCc
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEFNM------------EQIGYYLDES---KQWGLP--------ISELERSITEARKHCNP  159 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~~---~~~~~d--------~~~L~~~i~~~~~~~~~  159 (509)
                      ++..|+...-+|++..........            ....++....   +...-.        .+.+++.+..... .++
T Consensus       159 ~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~i  237 (473)
T 4e3q_A          159 QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGA-DTI  237 (473)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCG-GGE
T ss_pred             CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCC-Cce
Confidence            456899999999986544322211            1222221110   000111        2345555554321 256


Q ss_pred             eEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        160 RAIVIINPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       160 ~~ivi~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      .+|++...+.-.|. ..+++.+++|.++|++||+++|.||++.+|..++  .......  .++.++     ++   +++|
T Consensus       238 Aavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG--~~fa~e~--~gv~PD-----i~---t~~K  305 (473)
T 4e3q_A          238 AGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG--NTWGCVT--YDFTPD-----AI---ISSK  305 (473)
T ss_dssp             EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS--SSCHHHH--TTCCCS-----EE---EECG
T ss_pred             EEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc--chhHHHh--cCCCCC-----hH---Hhcc
Confidence            77777666666776 5677899999999999999999999999997665  2333332  233333     33   6699


Q ss_pred             ccCCCCC-CeeEEEeeecCCHHHHHHHHHh
Q psy13922        239 GYMGECG-LRGGYSEVINLDPGVKAMLHKS  267 (509)
Q Consensus       239 ~~~G~~G-lr~G~v~~~~~~~~~~~~l~~~  267 (509)
                      .+ | .| +++|.++   .++++.+.+...
T Consensus       306 ~l-~-gG~~Pl~av~---~~~~i~~~~~~~  330 (473)
T 4e3q_A          306 NL-T-AGFFPMGAVI---LGPELSKRLETA  330 (473)
T ss_dssp             GG-G-TTSSCCEEEE---ECHHHHHHHHHH
T ss_pred             cc-c-CCCCCccccc---ccHHHHHHhccc
Confidence            99 4 66 9999998   799999988653

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.57  E-value=9.6e-15  Score=163.20  Aligned_cols=217  Identities=12%  Similarity=-0.003  Sum_probs=132.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh-----cCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI-----EDVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~~gd  101 (509)
                      .|.+.+++.+++.+.....+..+     ..+...++++.|.+..+.+ ..+.+++++++++|++.+++...     ..|.
T Consensus       399 ~p~i~~Ai~~Q~~~l~h~~~~~~-----~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~  472 (831)
T 4a0g_A          399 QAELAREMGYTAARFGHVMFPEN-----VYEPALKCAELLLDGVGKG-WASRVYFSDNGSTAIEIALKMAFRKFCVDHNF  472 (831)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCTTE-----ECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHhhccccccccc-----CCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHHHHHHHHHHHHHHHhhcCC
Confidence            47899999888887321111111     1233445555554432211 13689999999999999998873     1221


Q ss_pred             C--------CCCeEEEcCCCChhHHHHH-HhcCC---------------EE-E------------EEecCCCCCC-----
Q psy13922        102 G--------KKPGVLIPIPQYPLYSASL-AEFNM---------------EQ-I------------GYYLDESKQW-----  139 (509)
Q Consensus       102 ~--------~~~~Vlv~~p~y~~~~~~~-~~~g~---------------~~-~------------~v~~~~~~~~-----  139 (509)
                      +        ++..||...-.|++....+ ...|.               .+ .            .++.......     
T Consensus       473 ~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~  552 (831)
T 4a0g_A          473 CEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEY  552 (831)
T ss_dssp             ---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSST
T ss_pred             CccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccccccc
Confidence            1        2457888888888754333 32221               00 0            1111110000     


Q ss_pred             --CCC------------------HHHHHHHHHhh---hccCCceEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHCCcEE
Q psy13922        140 --GLP------------------ISELERSITEA---RKHCNPRAIVIINP-GNPTGQ-VLTKENIQDIIKFAHREKLFL  194 (509)
Q Consensus       140 --~~d------------------~~~L~~~i~~~---~~~~~~~~ivi~~p-~NPtG~-~~s~~~l~~l~~ia~~~~i~l  194 (509)
                        .-|                  .+.|++.+++.   ....++.+|++... ++..|. .++++++++|.++|++||+++
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilL  632 (831)
T 4a0g_A          553 GTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPV  632 (831)
T ss_dssp             TEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCE
T ss_pred             ccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeE
Confidence              001                  24566666531   01125777777654 788887 568999999999999999999


Q ss_pred             EEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEeeecCCHHHHHHHHH
Q psy13922        195 FADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       195 I~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~~~~~~~~~~~~l~~  266 (509)
                      |+||++..|...|.  .......  ++.++     +   .++||.+ | .| +++|+++   .++++++.+..
T Consensus       633 I~DEV~tGfGRtG~--~fa~e~~--gv~PD-----i---itlsK~L-~-gG~~Plgav~---~~~~i~~~~~~  688 (831)
T 4a0g_A          633 IFDEVFTGFWRLGV--ETTTELL--GCKPD-----I---ACFAKLL-T-GGMVPLAVTL---ATDAVFDSFSG  688 (831)
T ss_dssp             EEECTTTTTTTTSB--SSTHHHH--SSCCS-----E---EEECGGG-G-TTSSCCEEEE---ECHHHHHTTCS
T ss_pred             EEEcCccccccCCC--chhhHhc--CCCCc-----E---EEEeccc-c-cCccCcEEEE---ECHHHHHHHhc
Confidence            99999999877653  2333322  22222     3   3789999 4 57 8999998   79999988754

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.53  E-value=2.5e-13  Score=140.39  Aligned_cols=188  Identities=9%  Similarity=0.039  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC----CCCCCCeEEEcCCCChhHHHHHHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED----VDGKKPGVLIPIPQYPLYSASLAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~  130 (509)
                      ...+.+.+..++.+..|.+ .....++++|+|.+...++.+.+++    ++    .|+++.-+|.+...++..+|+.++.
T Consensus        96 ~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~----~viv~r~aHkSv~kAl~l~Gl~p~~  170 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAK----YIIWPRIDQKSCFKSMVTAGFEPVV  170 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCC----EEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCC----EEEEECCcHHHHHHHHHHcCCeeEE
Confidence            4467778888887777743 2234688888885555555555444    55    8999999999999999999999998


Q ss_pred             EecCC-CCCCCCCHHHHHHHHHhhhccCCceEEEEeCC-CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCC
Q psy13922        131 YYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINP-GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG  208 (509)
Q Consensus       131 v~~~~-~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p-~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~  208 (509)
                      ++... +..+.+|++.|+++|++...  ..+++++.+| ++.+|.+-   ++++|+++|++||+++++|++|+.....  
T Consensus       171 v~~~~~~~~~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~d---dl~~Ia~ia~~~gi~l~VD~A~G~~~~~--  243 (450)
T 3bc8_A          171 IENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSK--  243 (450)
T ss_dssp             ECCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHH--
T ss_pred             EEeeecCccCCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceec---CHHHHHHHHHHCCCeEEEECCCchhhhh--
Confidence            86531 22468999999999988521  1345554444 55456664   4999999999999999999999864321  


Q ss_pred             CccccHH-HHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        209 SKFYSFK-KVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       209 ~~~~~~~-~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                        ...+. +.. +.+    ..+.++ .|.+|++.  .-...+++.+  .+++..+++..
T Consensus       244 --~~~l~~~a~-~~~----~AD~~v-~S~HK~l~--a~~~~~~l~~--rd~~~~~~~~~  290 (450)
T 3bc8_A          244 --CMHLIQQGA-RVG----RIDAFV-QSLDKNFM--VPVGGAIIAG--FNEPFIQDISK  290 (450)
T ss_dssp             --HHHHHHHHH-HHS----CCCEEE-EEHHHHHS--CCSSCEEEEE--SCHHHHHHHHH
T ss_pred             --hHhHHHHHh-ccc----CCCEEE-ECCccCCC--chhccEEEEe--cCHHHHHHHHH
Confidence              11111 111 111    122554 48999983  4455666654  68887776654

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.52  E-value=8.7e-12  Score=127.53  Aligned_cols=190  Identities=9%  Similarity=0.058  Sum_probs=124.5

Q ss_pred             HHHHHHH-HHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC
Q psy13922         57 IIRRHVA-QYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE  135 (509)
Q Consensus        57 ~lr~~va-~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~  135 (509)
                      .|-+.++ +|+. ..|.+ .....++++|+|.++..++.+.++++.+.++.||++-.+|.+...++..+|++++.++...
T Consensus       116 ~ltn~l~ld~L~-~~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~  193 (501)
T 3hl2_A          116 KITNSLVLDIIK-LAGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL  193 (501)
T ss_dssp             HHHHHHHHHHHH-HTTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred             HHHHHHHHHHHH-HcCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence            4555555 4444 44755 2346899999997777777777664210113999999999999999999999999997621


Q ss_pred             -CCCCCCCHHHHHHHHHhhhccCCceEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcccc
Q psy13922        136 -SKQWGLPISELERSITEARKHCNPRAIV-IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS  213 (509)
Q Consensus       136 -~~~~~~d~~~L~~~i~~~~~~~~~~~iv-i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~  213 (509)
                       +..+.+|++.++++|++...  ...+++ .+.+.|-.+.+   +++++|+++|++||+++++|++|+.....    +..
T Consensus       194 d~~~~~id~e~le~aI~e~ga--~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~----~~~  264 (501)
T 3hl2_A          194 EGDELRTDLKAVEAKVQELGP--DCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSK----CMH  264 (501)
T ss_dssp             ETTEEEECHHHHHHHHHHHCG--GGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHH----HHH
T ss_pred             cccccCCCHHHHHHHHHhcCC--CcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhh----hhh
Confidence             12468899999999998521  233444 44555643444   35999999999999999999999764311    111


Q ss_pred             HHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       214 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      +..-.-+.++    .+.+ +.|..|++.  .-+..|.+.+  .++++++++..
T Consensus       265 lp~sA~~~Gr----AD~v-VqS~HK~ll--vpIGG~ii~~--~d~e~l~~~~~  308 (501)
T 3hl2_A          265 LIQQGARVGR----IDAF-VQSLDKNFM--VPVGGAIIAG--FNDSFIQEISK  308 (501)
T ss_dssp             HHHHHHHHSC----CCEE-EEEHHHHHC--CCSSCEEEEE--SCHHHHHHHHH
T ss_pred             hHHHHHhcCC----CcEE-Eecccccce--eecCceEEEe--CCHHHHHHHHH
Confidence            1111112221    2255 458999974  4344555533  78888887744

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.28  E-value=8.8e-10  Score=112.34  Aligned_cols=296  Identities=13%  Similarity=0.053  Sum_probs=169.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCccc------CCCCcchHHHHHHHHHHHhhhcCCCCCCC----cEEEeCCHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGS------YTDSPGIEIIRRHVAQYISRRDGQPADWQ----DVILSAGASDGIKS   91 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~------Y~~~~g~~~lr~~va~~l~~~~g~~~~~~----~i~~t~G~~~al~~   91 (509)
                      ..+..++.|++++-..+..   .....      |+......++.+...+...+.+|  .+..    ||-.-+|+ .|...
T Consensus        62 SEN~~S~aV~~a~gS~ltn---KYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~--a~~A~w~VNVQP~SGs-~AN~a  135 (490)
T 3ou5_A           62 SENFCSRAALEALGSCLNN---KYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQPYSGS-PANLA  135 (490)
T ss_dssp             TCCCCCHHHHHHHTSGGGT---CCCCC----------CHHHHHHHHHHHHHHHHTT--CCTTTEEEECCCSSHH-HHHHH
T ss_pred             CCCcCCHHHHHHhcCcccc---cccCCCCCccccCCChHHHHHHHHHHHHHHHHhC--CCccccCCCCCcCCHH-HHHHH
Confidence            3444466666666555544   11111      23222333444444455555555  3333    45555555 68889


Q ss_pred             HHHHhhcCCCCCCCeEEEcCCCChhHHHHH--------Hhc--CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceE
Q psy13922         92 VLKLLIEDVDGKKPGVLIPIPQYPLYSASL--------AEF--NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRA  161 (509)
Q Consensus        92 ~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~--------~~~--g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~  161 (509)
                      ++.+|++|||    +|+..+..+.++...-        ...  -.+.++++++++ +..+|.+++++...+.    +|++
T Consensus       136 vy~All~PGD----~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~----kPkl  206 (490)
T 3ou5_A          136 VYTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF----RPRL  206 (490)
T ss_dssp             HHHHHCC-CC----CEECBC----------------------------CBCEETT-TTEECHHHHHHHHHHH----CCSE
T ss_pred             HHHHHcCCCC----EEEecccCCCCcccccccCCCcccccccccccccccccCCC-CCcccHHHHHHHHhhc----CCCe
Confidence            9999999999    9999887766653211        111  235566666654 3479999999999987    9999


Q ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccC
Q psy13922        162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM  241 (509)
Q Consensus       162 ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  241 (509)
                      |++..-.+|  ..++   ++++.+||++.|.++++|-+|.-...-++ .+++...          ..+++ ..|.+|++ 
T Consensus       207 Ii~G~SaY~--r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g-~~psP~~----------~ADvV-TtTTHKTL-  268 (490)
T 3ou5_A          207 IIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIPSPFK----------HADIV-TTTTHKTL-  268 (490)
T ss_dssp             EEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGGG----------TCSEE-EEESSSTT-
T ss_pred             EEECCccCc--cccC---HHHHHHHHhhcccEEEechhhhhhhhccc-ccCCccc----------cceEE-eccccccc-
Confidence            998655555  2334   88888899999999999999854333223 2222221          22366 45889998 


Q ss_pred             CCCCCeeEEEeeecCCH--------------HHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhc
Q psy13922        242 GECGLRGGYSEVINLDP--------------GVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDG  305 (509)
Q Consensus       242 G~~Glr~G~v~~~~~~~--------------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (509)
                        .|=|.|.+.+  .+.              ++.+++.+...+.  +++-..                            
T Consensus       269 --rGPrGG~Il~--~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h----------------------------  316 (490)
T 3ou5_A          269 --RGARSGLIFY--RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNH----------------------------  316 (490)
T ss_dssp             --CSCSCEEEEE--ECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHH----------------------------
T ss_pred             --cCCCceEEEe--ccccccccccccchhHHHHHHHHHhhcCccccccchHH----------------------------
Confidence              5668899874  321              4566665544322  222222                            


Q ss_pred             ccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHH
Q psy13922        306 CRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIA  384 (509)
Q Consensus       306 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~  384 (509)
                            ..++.+.++.         +....+.....+...++.+.|.+.|.+. |++++. ...+-.++++++       
T Consensus       317 ------~IAAkAVaf~---------Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~-------  373 (490)
T 3ou5_A          317 ------AIAAVAVALK---------QACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLR-------  373 (490)
T ss_dssp             ------HHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG-------
T ss_pred             ------HHHHHHHHHH---------HHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEecc-------
Confidence                  2223332221         2222335666777888888888888887 998863 344456666765       


Q ss_pred             HHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        385 KAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       385 ~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                         ..|+.  -..+..+|++.||.+.
T Consensus       374 ---~~g~t--G~~ae~~Le~agItvN  394 (490)
T 3ou5_A          374 ---PKGLD--GARAERVLELVSITAN  394 (490)
T ss_dssp             ---GGTCC--HHHHHHHHHHTTEECE
T ss_pred             ---ccCCC--HHHHHHHHHHcCcEEC
Confidence               12332  2226889999999886

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=88.34  E-value=3.9  Score=38.81  Aligned_cols=103  Identities=16%  Similarity=0.183  Sum_probs=68.7

Q ss_pred             CCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh
Q psy13922         75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR  154 (509)
Q Consensus        75 ~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  154 (509)
                      +-.-+++|.|++..=..+.+.|.+.|.    .|++..-.-......++..|.+...+..|-.     |.+++++.++...
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga----~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~   98 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA----RVFITGRRKDVLDAAIAEIGGGAVGIQADSA-----NLAELDRLYEKVK   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHCTTCEEEECCTT-----CHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcCCCeEEEEecCC-----CHHHHHHHHHHHH
Confidence            334567777776666677788888887    8888776655566667777888777776633     7788887776643


Q ss_pred             cc-CCceEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q psy13922        155 KH-CNPRAIVIINPGNPTGQ--VLTKENIQDIIKF  186 (509)
Q Consensus       155 ~~-~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~i  186 (509)
                      +. .++.++|-+.-.++.+.  -++.++|+++.++
T Consensus        99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~v  133 (273)
T 4fgs_A           99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDR  133 (273)
T ss_dssp             HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHH
Confidence            32 35666554433333332  5678888888874

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=82.51  E-value=12  Score=34.44  Aligned_cols=101  Identities=14%  Similarity=0.020  Sum_probs=64.0

Q ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc
Q psy13922         76 WQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK  155 (509)
Q Consensus        76 ~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  155 (509)
                      ...+++|.|+...=..+.+.|.+.|.    .|++..-.-..........+.++..+..|-.     |.+.+++.++...+
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~   76 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA----TVIVSDINAEGAKAAAASIGKKARAIAADIS-----DPGSVKALFAEIQA   76 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHCTTEEECCCCTT-----CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHHHH
Confidence            34677777776666677788888887    8888776655555666666777777665533     67777777765432


Q ss_pred             c-CCceEEEEeCCCCCCCC--CCCHHHHHHHHH
Q psy13922        156 H-CNPRAIVIINPGNPTGQ--VLTKENIQDIIK  185 (509)
Q Consensus       156 ~-~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~  185 (509)
                      . .++.++|-+.-..+.+.  ..+.+++++..+
T Consensus        77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~  109 (247)
T 3rwb_A           77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIID  109 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence            2 35676664433333322  456677777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	509
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	3e-34
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	3e-04
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-31
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-04
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	9e-30
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	8e-05
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	7e-21
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	8e-07
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	6e-20
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	3e-05
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	3e-19
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	2e-17
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	7e-07
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	4e-17
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	7e-04
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	4e-16
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-16
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	1e-14
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	3e-14
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-13
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	4e-13
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	6e-05
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	3e-12
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-04
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	4e-12
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	3e-11
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	2e-08
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	3e-04
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	6e-07
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	0.002
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	2e-06
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	9e-05
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	1e-05
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	0.003
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	4e-05
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	6e-04
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	0.004
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	5e-05
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	7e-05
d1onra_	316	c.1.10.1 (A:) Transaldolase {Escherichia coli [Tax	3e-04
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	5e-04
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	8e-04
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	0.001
d2e1da1	319	c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musc	0.003

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score =  131 bits (329), Expect = 3e-34
 Identities = 77/405 (19%), Positives = 144/405 (35%), Gaps = 82/405 (20%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F  P  + + A+A L+    Q    Y  + G   +R  +AQ + R +G      +++
Sbjct: 39  EPDFNTPKHIVEAAKAALE----QGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNIL 94

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G    I +++  +IE  D     V+IP P +  Y   +       +        Q+ 
Sbjct: 95  VTNGGKQSIFNLMLAMIEPGDE----VIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFK 150

Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
           +   ++ ++IT        + +V   P NPTG V T + ++ I + A    L++ +DE+Y
Sbjct: 151 VSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY 205

Query: 201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV 260
            + +  + ++  S          P            +K Y    G R G+  +    P V
Sbjct: 206 -EKILYDDAQHLSIGAA-----SPEAYERSVVCSGFAKTY-AMTGWRVGF--LAGPVPLV 256

Query: 261 KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV 320
           KA       +       A       +++ +                              
Sbjct: 257 KAATKIQGHSTSNVCTFAQYGAIAAYENSQ------------------------------ 286

Query: 321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA 380
                            Q +L +  +R + + D  N++ G+ C    GA Y FP +    
Sbjct: 287 --------------DCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSI---- 328

Query: 381 KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                  A+    S+ +  ELL++  +  VPGA FG        R
Sbjct: 329 -------AKTGRSSLDFCSELLDQHQVATVPGAAFG---ADDCIR 363

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 448 PSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFL 505
            S+ +  E L++  +  VPGA FG        R +     + +K  +E+  +F    L
Sbjct: 334 SSLDFCSELLDQHQVATVPGAAFG---ADDCIRLSYATDLDTIKRGMERLEKFLHGIL 388

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score =  122 bits (308), Expect = 2e-31
 Identities = 71/410 (17%), Positives = 134/410 (32%), Gaps = 95/410 (23%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F  P+ VK+ A+  L     Q    Y    GI  +R  +A+   R +G     ++ I
Sbjct: 40  EPDFDTPEHVKEAARRALA----QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETI 95

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G S  + ++ + +++  D     V++  P +  Y   +       +       + + 
Sbjct: 96  VTVGGSQALFNLFQAILDPGDE----VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFV 151

Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
                + R+IT        +A+V+ +P NPTG V  KE ++ + + A     +L +DE+Y
Sbjct: 152 PDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIY 206

Query: 201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELA-----SFMSCSKGYMGECGLRGGYSEVIN 255
           +  +Y                GE +    +A     +    +K +    G R GY     
Sbjct: 207 EHLLY---------------EGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGY--ACG 248

Query: 256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV 315
               +KAM   S  +   P                                         
Sbjct: 249 PKEVIKAMASVSRQSTTSP----------------------------------------- 267

Query: 316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ 375
                        + E      +   ++ ++R  ++ +   ++ G+      GA Y    
Sbjct: 268 DTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMD 326

Query: 376 MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                            P  + A E L   G+ +VPG  F       H R
Sbjct: 327 TS------------PIAPDEVRAAERLLEAGVAVVPGTDFA---AFGHVR 361

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 422 YHFRQQVWWRHYTQRAIAKAKAEG----------KCPSVLYAFESLERTGICIVPGAGFG 471
           Y  R+ +     T   +   +  G            P  + A E L   G+ +VPG  F 
Sbjct: 296 YRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA 355

Query: 472 QVPGTYHFRTTILPQPEKLKAMLEKFREF 500
                 H R +     E L+  LE+F   
Sbjct: 356 ---AFGHVRLSYATSEENLRKALERFARV 381

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  118 bits (296), Expect = 9e-30
 Identities = 77/406 (18%), Positives = 160/406 (39%), Gaps = 81/406 (19%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD-GQPADWQDV 79
           +P F  P  +K+ A+  LD    + +  Y  + G+  +R  +A+ + +++  +     ++
Sbjct: 34  EPDFDTPQHIKEYAKEALD----KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEI 89

Query: 80  ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQW 139
           ++  GA+      L   ++D +     VLIP P +  Y+ ++     + +     E  ++
Sbjct: 90  MVLLGANQAFLMGLSAFLKDGEE----VLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEF 145

Query: 140 GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
            L + EL++ +T+       RA++I +P NPTG VLTK+++++I  F     L + +DEV
Sbjct: 146 RLNVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEV 200

Query: 200 YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG 259
           Y ++   + ++ YS   +    G   +++ +  F   SK +    G R G+  V      
Sbjct: 201 Y-EHFIYDDARHYSIASL---DGMFERTITVNGF---SKTF-AMTGWRLGF--VAAPSWI 250

Query: 260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV 319
           ++ M+   +    CP      +  +   D R    V++  +      +        M   
Sbjct: 251 IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLP 310

Query: 320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLP 379
              P                                           +GA Y FP+++  
Sbjct: 311 TVKP-------------------------------------------KGAFYIFPRIR-- 325

Query: 380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                    +    S  ++  +L+   + +VPG+ FG+  G  + R
Sbjct: 326 ---------DTGLTSKKFSELMLKEARVAVVPGSAFGK-AGEGYVR 361

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK 509
           L+   + +VPG+ FG+  G  + R +     EKL+  +++        L + K
Sbjct: 339 LKEARVAVVPGSAFGK-AGEGYVRISYATAYEKLEEAMDRME----RVLKERK 386

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 92.3 bits (228), Expect = 7e-21
 Identities = 85/411 (20%), Positives = 159/411 (38%), Gaps = 82/411 (19%)

Query: 18  PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ 77
           P  FD    P+ +K+     +     +    Y DS G+  +R+ + +   R++G      
Sbjct: 40  PVKFDFQ-PPEHMKEAYCKAIK----EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPD 94

Query: 78  DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
           DV ++A  ++ ++ +   L++  D     +L+P P YP Y+  +  +  + + Y   E +
Sbjct: 95  DVRVTAAVTEALQLIFGALLDPGDE----ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE 150

Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
            W   I ++ + IT        +AI +INP NPTG +  K+ +++I+  A   ++ + +D
Sbjct: 151 DWQPDIDDIRKKIT-----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISD 205

Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD 257
           E+Y            +++   +  G   K + +      SK Y    G R GY   ++ +
Sbjct: 206 EIYD---------LMTYEGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPE 255

Query: 258 P---GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT 314
                V+  + +     LCP   A  +       P   D +K+  +              
Sbjct: 256 NKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM--DYLKEYMKK------------- 300

Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
                                        LK+R   +    N I G+S    QGA Y FP
Sbjct: 301 -----------------------------LKERRDYIYKRLNEIPGISTTKPQGAFYIFP 331

Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
           ++++      K           +  ++L    +  V G+GFG+  G  HFR
Sbjct: 332 KIEVGPWKNDKE----------FVLDVLHNAHVLFVHGSGFGE-YGAGHFR 371

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.8 bits (115), Expect = 8e-07
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFR 498
            K +         +  + L    +  V G+GFG+  G  HFR   LP  E L+  +++F 
Sbjct: 331 PKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRFE 389

Query: 499 EFHEE 503
           +F +E
Sbjct: 390 KFMKE 394

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 89.8 bits (222), Expect = 6e-20
 Identities = 57/415 (13%), Positives = 111/415 (26%), Gaps = 90/415 (21%)

Query: 23  DPRFPDDVKQR---AQAVLDGCRGQSVGSYTDSPGIEII----RRHVAQYISRRDGQPAD 75
           D  F ++  ++   A AVL         SY  +P    I     + + +         A 
Sbjct: 65  DGLFLEEYWKQHKEASAVLV--SPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK 122

Query: 76  WQDVILSAGASDGIKSVLKLLIEDVDGK--KPG--VLIPIPQYPLYSASLAEFNMEQIGY 131
            + ++   G +  I  ++  L  ++      P   V+   P YP++         EQ  Y
Sbjct: 123 DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF--------REQTKY 174

Query: 132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK 191
           +  +   W    +                  ++ +P NP G +              R  
Sbjct: 175 FDKKGYVWAGNAANYVNVSNP-----EQYIEMVTSPNNPEGLL--------------RHA 215

Query: 192 LFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS 251
           +      +Y D VY     +             YK+ E     + SK   G  G R G++
Sbjct: 216 VIKGCKSIY-DMVYYWPH-YTPI---------KYKADEDILLFTMSKFT-GHSGSRFGWA 263

Query: 252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV 311
            +I  +     +L+              +                 R+  VL        
Sbjct: 264 -LIKDESVYNNLLNYMTKNTEGTPRETQL-----------------RSLKVLK------- 298

Query: 312 GQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAM 370
                          +                L++R   +    +  +  S     Q   
Sbjct: 299 ---------EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEY 349

Query: 371 YAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
             + +   P    + A  + +       ++  +   I    G GF       + R
Sbjct: 350 CNYFRRMRPPSP-SYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSR--YVR 401

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 419 PGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH 478
               ++            + A  K E +       +++ +   I    G GF       +
Sbjct: 347 SEYCNY---FRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNGRINTQNGVGFEASSR--Y 399

Query: 479 FRTTILPQPEKLKAMLEKFREFHEE 503
            R +++   +    ++   ++  + 
Sbjct: 400 VRLSLIKTQDDFDQLMYYLKDMVKA 424

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score = 87.4 bits (215), Expect = 3e-19
 Identities = 34/275 (12%), Positives = 72/275 (26%), Gaps = 7/275 (2%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
                  VK+  Q +L+    ++  +Y    GI    R   + +  +     + +    +
Sbjct: 42  KTPVLTSVKKAEQYLLEN---ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98

Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
                     +       +     V +  P +P + +      +E   Y   +++   L 
Sbjct: 99  QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLD 158

Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
              L  S+ EA        +      NPTG   T E  Q + + +  +      D  YQ 
Sbjct: 159 FDALINSLNEA--QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQG 216

Query: 203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA 262
                  +     +    M +        S                   +   +D     
Sbjct: 217 FAR-GLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAA-DSETVDRAFSQ 274

Query: 263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQ 297
           M     +    P       +  +  +       +Q
Sbjct: 275 MKAAIRANYSNPPAHGASVVATILSNDALRAIWEQ 309

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (201), Expect = 2e-17
 Identities = 66/414 (15%), Positives = 127/414 (30%), Gaps = 61/414 (14%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
            P F  PD   +  Q  + G     +  YT + G   + + +A +     GQ  D    +
Sbjct: 34  FPDFPPPDFAVEAFQHAVSG--DFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNV 91

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
                + G    L    + +  +   V+I  P +  Y           +   L       
Sbjct: 92  ---LVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQN 148

Query: 141 LPIS-----ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
             +      +L+      +     +A+V+  P NP G+V ++E ++ +     +  +   
Sbjct: 149 GELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCI 208

Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN 255
            DEVYQ  VY +G +  S   +      P       +  S  K +    G + G+    +
Sbjct: 209 TDEVYQWMVY-DGHQHISIASL------PGMWERTLTIGSAGKTFS-ATGWKVGWVLGPD 260

Query: 256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV 315
                   +H++                            + +A       R Q + +  
Sbjct: 261 HIMKHLRTVHQNSVFHCPT---------------------QSQAAVAESFEREQLLFRQP 299

Query: 316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ 375
               V  PQ  +   +   R  QSV                   G+     QG+ +    
Sbjct: 300 SSYFVQFPQAMQRCRDHMIRSLQSV-------------------GLKPLIPQGSYFLITD 340

Query: 376 MK-LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
           +     K      A  +     +   +++  G+  +P + F  VP   HF   +
Sbjct: 341 ISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYI 394

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 407 ICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVP 466
             ++P   +      +          + ++      A  +     +    ++  G+  +P
Sbjct: 327 KPLIPQGSY------FLI---TDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP 377

Query: 467 GAGFGQVPGTY----HFRTTILPQPEKLKAMLEKFREFHEE 503
            + F  VP       + R   +     L+AM EK R++  E
Sbjct: 378 VSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 418

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 81.2 bits (199), Expect = 4e-17
 Identities = 56/384 (14%), Positives = 118/384 (30%), Gaps = 65/384 (16%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQ--PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G+   ++ +  +++   G     D   ++L+AGA+   ++ +  L +  +     
Sbjct: 80  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEA---- 135

Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRA--IVI 164
           VLIP P YP +   L      +I      S               +  +  N R   +++
Sbjct: 136 VLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 195

Query: 165 INPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEP 224
            NP NP G  +T+  +  ++ F   + + L +DE+Y    +     F S  +VL +    
Sbjct: 196 TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF-SSPSFISVMEVLKDRNCD 254

Query: 225 ---YKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVS 281
                   +    S SK  +G  G R G     +      A    S   +   T      
Sbjct: 255 ENSEVWQRVHVVYSLSK-DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQT------ 307

Query: 282 LPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL 341
                                                          S ++ ++   +  
Sbjct: 308 ---------------------------------------QHLLSAMLSDKKLTKNYIAEN 328

Query: 342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL 401
               ++ +    +     G+SC      ++ +  M+         ++      +    ++
Sbjct: 329 HKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMR------HLLRSNTFEAEMELWKKI 382

Query: 402 LERTGICIVPGAGFGQVPGTYHFR 425
           +    + I PG+          FR
Sbjct: 383 VYEVHLNISPGSSCHC-TEPGWFR 405

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEK-LKAMLEKFREFHEEF 504
           +    + I PG+          FR      PE+ L   +++ + F  E+
Sbjct: 383 VYEVHLNISPGSSCHC-TEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score = 78.1 bits (191), Expect = 4e-16
 Identities = 49/397 (12%), Positives = 105/397 (26%), Gaps = 56/397 (14%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
            P     VK   + + +         Y    G+  +  + A+ I            VI  
Sbjct: 45  KPWVLPSVKAAEKLIHN--DSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102

Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
              S      +             V +  P +  + A      ++   Y    ++   L 
Sbjct: 103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD 162

Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
           ++    +I +A +      ++     NPTG   T E    I+     +      D  YQ 
Sbjct: 163 LNGFLNAIQKAPEGS--IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQG 220

Query: 203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA 262
                     ++   L        S             M   G R G   +         
Sbjct: 221 FAT-GDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGM--YGERVGCFHLALTKQAQNK 277

Query: 263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP 322
            +  ++++ L   + + VS P                          + G  ++  ++  
Sbjct: 278 TIKPAVTSQLAKIIRSEVSNP-------------------------PAYGAKIVAKLLET 312

Query: 323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG---MSCNPVQGAMYAFPQMKLP 379
           P+      EQ+ ++  ++   + +    + D    +           Q  M++F    L 
Sbjct: 313 PEL----TEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFT--GLT 366

Query: 380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
            + + +               L E   + +V      
Sbjct: 367 PQMVKR---------------LEETHAVYLVASGRAS 388

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score = 76.9 bits (188), Expect = 7e-16
 Identities = 36/228 (15%), Positives = 64/228 (28%), Gaps = 13/228 (5%)

Query: 22  DDPRFP--DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV 79
           +D   P    V +    +    +      Y    G+   R  +A  +   D      Q V
Sbjct: 39  EDGIIPQLQAVAEAEARLNA--QPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRV 96

Query: 80  ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQW 139
                        +          + GV +  P +  + A  A    E   Y   +    
Sbjct: 97  ATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATN 156

Query: 140 GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
           G+  ++L  ++           ++     NPTG  LT +    +I+     +L  F D  
Sbjct: 157 GVRFNDLLATLKTLPAR--SIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIA 214

Query: 200 YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR 247
           YQ        +     + +   G       L S        +   G R
Sbjct: 215 YQGFGA-GMEEDAYAIRAIASAGL----PALVSNSFSKIFSL--YGER 255

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 12/226 (5%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADWQDVIL 81
            P   + V++    +      +    Y    G+    R  A+     + +     + V +
Sbjct: 44  KPYVLNCVRKAEAMIAAK---KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTV 100

Query: 82  SAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGL 141
              +  G   V    ++        V +P P +  ++    +  ++   Y   + K   L
Sbjct: 101 QGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160

Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
             +     I++  +      ++     NPTG    +E  +++     +  L  + D  YQ
Sbjct: 161 DFTGAMEDISKIPEKS--IILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ 218

Query: 202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR 247
                + ++     +  +E G                  MG  G R
Sbjct: 219 GFASGDINRDAWALRHFIEQGIDVV------LSQSYAKNMGLYGER 258

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score = 72.3 bits (176), Expect = 3e-14
 Identities = 36/251 (14%), Positives = 62/251 (24%), Gaps = 11/251 (4%)

Query: 48  SYTDSPGIEIIRRHVAQYISRRDGQPADWQ-----DVILSAGASDGIKSVLKLLIEDVDG 102
            Y    G+   R   ++     D      +       +   GA       L       + 
Sbjct: 69  EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNN 128

Query: 103 KKPGVLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR 160
           K   V +  P +  ++   + A F   +   Y D  K+       L              
Sbjct: 129 KDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS---DLENAPEFSI 185

Query: 161 AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVE 220
            ++     NPTG   T E  + I     R  LF F D  YQ        +  ++      
Sbjct: 186 FVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS-GNLEKDAWAIRYFV 244

Query: 221 MGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV 280
                     +   +          L     E  ++   +  M          P      
Sbjct: 245 SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGAR 304

Query: 281 SLPQLFDDPRF 291
            + +   DP  
Sbjct: 305 IVARTLSDPEL 315

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 28/233 (12%), Positives = 64/233 (27%), Gaps = 15/233 (6%)

Query: 23  DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
                  V    Q +L+    ++  +Y    G    ++ + + I     +      +   
Sbjct: 42  HTPIMRAVHAAEQRMLET---ETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATV 98

Query: 83  AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
            G          L +  +      V +  P +P + + +    +    Y   +++  G+ 
Sbjct: 99  GGTG---ALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVD 155

Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
              ++  +  A        ++     NPTG  LT +   +I     +       D  YQ 
Sbjct: 156 FEGMKADLAAA--KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQG 213

Query: 203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN 255
                       + +   + E           +      G    R G    + 
Sbjct: 214 FGDGLEEDAAGTRLIASRIPEVL-------IAASCSKNFGIYRERTGCLLALC 259

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 68.7 bits (166), Expect = 4e-13
 Identities = 45/416 (10%), Positives = 104/416 (25%), Gaps = 53/416 (12%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           ++L Q F D   P        A  +     +   YT   G   + + +++  S+   +  
Sbjct: 29  LNLGQGFPDYHAPKYALNALAAAANSPDPLANQ-YTRGFGHPRLVQALSKLYSQLVDRTI 87

Query: 75  DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD 134
           +    +L    + G    L   I+    +   V+I  P +  Y   +           L 
Sbjct: 88  NPMTEVL---VTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLK 144

Query: 135 ESKQWGLPISELERSITEARK--HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL 192
            +K  G   S          +        ++IIN  +     +      +++    ++  
Sbjct: 145 PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWN 204

Query: 193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE 252
            L   +   +++  E  +             P       +  S  K      G + G++ 
Sbjct: 205 VLCVSDEVYEHMVFEPFEHIRICT------LPGMWERTITIGSAGK-TFSLTGWKIGWAY 257

Query: 253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG 312
                     M+H++                                         +++ 
Sbjct: 258 GPEALLKNLQMVHQNCVYTCAT-------------------------------PIQEAIA 286

Query: 313 QTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYA 372
                 +     P                      A++         GM+    QG  + 
Sbjct: 287 VGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV---------GMNPTVPQGGYFM 337

Query: 373 FPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV 428
                     +   +         +   + +  G+  +P + F   P  +     V
Sbjct: 338 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 393

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVW 429
                ++K P         E        A  L E      VP  G+      +       
Sbjct: 290 ETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGY------FMV---AD 340

Query: 430 WRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY----HFRTTILP 485
           W     +     + + +     +     +  G+  +P + F   P  +      R     
Sbjct: 341 WSSLDSKVDLTQETDAR-KDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK 399

Query: 486 QPEKLKAMLEKFREF 500
           + E L+   E  R++
Sbjct: 400 KDENLQKAAEILRKW 414

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 64/405 (15%), Positives = 127/405 (31%), Gaps = 91/405 (22%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           +P F  P+ V + A   L     +    YTD  GI  +R  +A+ I  R  +      V+
Sbjct: 37  EPDFPTPEPVVEEAVRFLQ----KGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVV 92

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ GA   + +    L++  D     V++  P +  Y   +              SK + 
Sbjct: 93  VTNGAKQALFNAFMALLDPGDE----VIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQ 148

Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
                      E       +A++I +P NPTG V  +E ++ +++ A +   ++ +DE  
Sbjct: 149 PS-----LEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDE-- 201

Query: 201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV 260
                 +   +      ++++ E +  +   +  S S       G R GY          
Sbjct: 202 ----VYDSLVYTDEFTSILDVSEGFDRIVYINGFSKS---HSMTGWRVGYLISSEKVATA 254

Query: 261 KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV 320
            + +    ++ +              D+       K+R   V++  +             
Sbjct: 255 VSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLK------------- 301

Query: 321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA 380
                                                  G+     +GA Y F +++   
Sbjct: 302 -------------------------------------KMGVKFVEPEGAFYLFFKVRGDD 324

Query: 381 KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
               +               LLE   + +VPG+ F + PG    R
Sbjct: 325 VKFCE--------------RLLEEKKVALVPGSAFLK-PG--FVR 352

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 422 YHFRQQVWWRHYTQRAIAKAKAEG--------KCPSVLYAFESLERTGICIVPGAGFGQV 473
           +  R+        +  +   + EG        +   V +    LE   + +VPG+ F + 
Sbjct: 289 FKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLK- 347

Query: 474 PGTYHFRTTILPQPEKLKAMLEKFREF 500
           PG    R +     E+L   L++  +F
Sbjct: 348 PG--FVRLSFATSIERLTEALDRIEDF 372

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 64/381 (16%), Positives = 131/381 (34%), Gaps = 61/381 (16%)

Query: 49  YTDSPGIEIIRRHVAQYISRRDGQ--PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
           + D  G+   R+ +A+++ +  G     D + V+++ GA+   ++++  L +  D     
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD----A 134

Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR--AIVI 164
            L+P P YP ++  L      Q+     ES       S+  +   E  +  N +   +++
Sbjct: 135 FLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194

Query: 165 INPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEP 224
            NP NP G  L K+ ++ ++ F ++  + L  DE+Y   V+ +  +F S  ++L E    
Sbjct: 195 TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQEMT 253

Query: 225 YKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQ 284
           Y + +L   +      MG  G R G     N D        K  S  L  T         
Sbjct: 254 YCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDV--VNCARKMSSFGLVSTQTQYFLAAM 311

Query: 285 LFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSL 344
           L D+    + +++ A  +    +  + G  V+         G                  
Sbjct: 312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAG------------------ 353

Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
                                    ++ +  ++         +       +     ++  
Sbjct: 354 -------------------------LFCWMDLR------PLLRESTFDSEMSLWRVIIND 382

Query: 405 TGICIVPGAGFGQVPGTYHFR 425
             + + PG+ F        FR
Sbjct: 383 VKLNVSPGSSFEC-QEPGWFR 402

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 56/413 (13%), Positives = 122/413 (29%), Gaps = 73/413 (17%)

Query: 14  LVSLPQLFDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDG 71
           ++SL      P     + +K+ A  VL+         Y  + G   +R  +A+++ +R  
Sbjct: 31  VISLAGGLPAPETFPVETIKKIAVEVLEE-HADKALQYGTTKGFTPLRLALARWMEKRYD 89

Query: 72  QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGY 131
            P    +++  AG+   +  + ++ +    G    V  P     L +    ++   +   
Sbjct: 90  IPMSKVEIMTVAGSQQALDLIGRVFLN--PGDPIVVEAP---TYLAAIQAFKYYDPEFIS 144

Query: 132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK 191
              + K   + + E +      +         +    NP G  ++ +  + +++ A+   
Sbjct: 145 IPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYD 204

Query: 192 LFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS 251
             +  D  Y +  Y  G      K         Y         + SK      G R G+ 
Sbjct: 205 FLIVEDGPYSELRY-SGEPTPPIKHFDDYGRVIY-------LGTFSKILA--PGFRIGWV 254

Query: 252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV 311
                   ++ M     S  LC          +  ++    + + +              
Sbjct: 255 AAHP--HLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKI------------- 299

Query: 312 GQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMY 371
                              E +   + ++L++L++            EG+     +G M+
Sbjct: 300 ------------------IEFYKPRRDAMLEALEEYMP---------EGVEWTKPEGGMF 332

Query: 372 AFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
               + LP     K              E     G+  VPG  F       + 
Sbjct: 333 VR--VTLPEGIDTKL-----------MMERAVAKGVAYVPGEAFFVHRDKKNT 372

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 54/412 (13%), Positives = 114/412 (27%), Gaps = 93/412 (22%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           V+L Q F     P  + +  +  L          Y    G+  +R  +A+  +       
Sbjct: 28  VNLGQGFPSNPPPPFLLEAVRRALGRQDQ-----YAPPAGLPALREALAEEFAVEPESVV 82

Query: 75  DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD 134
                             L +L++ + G    V++  P + +Y         +     LD
Sbjct: 83  VTSGAT----------EALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLD 132

Query: 135 ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL 194
            + +        + S  E       RA+++  P NPTG V  +  ++ I + A    LFL
Sbjct: 133 LTPEGFRL----DLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFL 188

Query: 195 FADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI 254
                   +   +   +               + E    +  +   +   G R G+    
Sbjct: 189 I------SDEVYDELYYGERP-----RRLREFAPERTFTVGSAGKRLEATGYRVGWIVGP 237

Query: 255 NLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT 314
                  A + +  S                                             
Sbjct: 238 KEFMPRLAGMRQWTSFS------------------------------------------- 254

Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
                +           +     +++ +  ++R  ++A    ++ G+     +G  +   
Sbjct: 255 -APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMA 312

Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG-QVPGTYHFR 425
             +LP                  AF L+E   + ++P + F  + P    FR
Sbjct: 313 --ELPG---------------WDAFRLVEEARVALIPASAFYLEDPPKDLFR 347

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 422 YHFRQQVWWRHYTQRAIAKAKAEG------KCPSVLYAFESLERTGICIVPGAGFG-QVP 474
           Y  R+ +         +     EG      + P    AF  +E   + ++P + F  + P
Sbjct: 283 YRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDP 341

Query: 475 GTYHFRTTILPQPEKLKAMLEKFREF 500
               FR       E+L   LE+    
Sbjct: 342 PKDLFRFAFCKTEEELHLALERLGRV 367

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 42/406 (10%), Positives = 103/406 (25%), Gaps = 68/406 (16%)

Query: 22  DDPRFP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
           D   FP  ++ + A+ +++     ++  Y+ + G  ++++ + + + R  G     +D +
Sbjct: 49  DPETFPRKELAEIAKEIIEKEYHYTLQ-YSTTEGDPVLKQQILKLLERMYGITGLDEDNL 107

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           +    S     ++  L  D +       +  P Y     +  ++    +   L++     
Sbjct: 108 IFTVGSQQALDLIGKLFLDDESYCV---LDDPAYLGAINAFRQYLANFVVVPLEDDGMDL 164

Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
             +        +  K    + I +++  +    V T    +  +     +      ++  
Sbjct: 165 NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDP 224

Query: 201 QDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV 260
              +  EG                         +  +   +   GLR G           
Sbjct: 225 YGALRYEGETVDPI---------FKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRK 275

Query: 261 KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVV 320
                +S           L +      D                                
Sbjct: 276 IVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLN----------- 324

Query: 321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA 380
                                         + + F+ I G+     +G ++ +  + LP 
Sbjct: 325 -----------------------------ALEEYFSDIPGVKWVKSEGGLFIW--LTLPE 353

Query: 381 KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP-GTYHFR 425
                             FE  +R  +  VPG  F      +   R
Sbjct: 354 GFDTWE-----------MFEYAKRKKVFYVPGRVFKVYDEPSPSMR 388

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 454 FESLERTGICIVPGAGFGQVP-GTYHFRTTI-LPQPEKLKAMLEKFREFHEEF 504
           FE  +R  +  VPG  F      +   R +  LP  EK+   +++ RE   E+
Sbjct: 361 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEY 413

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT 405
           + A  + +      G++    +GAMY   ++ L      K   E       +  +LLE  
Sbjct: 317 ESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVE-------FFEKLLEEE 369

Query: 406 GICIVPGAGFGQVPGTYHFR 425
            + ++PG  F   PG    R
Sbjct: 370 NVQVLPGTIFHA-PG--FTR 386

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLA 506
            V +  + LE   + ++PG  F   PG    R T     E  +  +E+ + F +   A
Sbjct: 358 DVEFFEKLLEEENVQVLPGTIFHA-PG--FTRLTTTRPVEVYREAVERIKAFCQRHAA 412

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 48/412 (11%), Positives = 100/412 (24%), Gaps = 79/412 (19%)

Query: 15  VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
           ++L Q F D   P  +++R    +     Q    Y    G++ +R  +AQ   R  G   
Sbjct: 29  INLSQGFPDFDGPRYLQERLAHHVA----QGANQYAPMTGVQALREAIAQKTERLYGYQP 84

Query: 75  DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD 134
           D    I     +                +    +I         A     +   +     
Sbjct: 85  DADSDITVTAGATEALY----AAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL 140

Query: 135 ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL 194
           +   + +   E              R +++  P NP+  V  + +   + +     ++F+
Sbjct: 141 QPPHFRVDWQEFAA-----LLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFV 195

Query: 195 FADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI 254
            +DEVY+   +++             +    +  E A  +S         G + GY    
Sbjct: 196 ISDEVYEHINFSQQGHAS--------VLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP 247

Query: 255 NLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT 314
                    +H+ ++  +         L         P+                     
Sbjct: 248 APISAEIRKVHQYLTFSVNTP----AQLALADMLRAEPEHYLALPDFYRQKRDILVNALN 303

Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
                + P                                            +G  +   
Sbjct: 304 ESRLEILPC-------------------------------------------EGTYFLLV 320

Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP-GTYHFR 425
                        A      V +   L +  G+  +P + F   P      R
Sbjct: 321 ----------DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIR 362

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 437 AIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVP-GTYHFRTTILPQPEKLKAMLE 495
            +    A      V +     +  G+  +P + F   P      R     +   L A  E
Sbjct: 318 LLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAE 377

Query: 496 KFRE 499
           + R+
Sbjct: 378 RLRQ 381

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 7/69 (10%)

Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
          D  F     + +     L       V  Y+     E     +A + S +     D Q V+
Sbjct: 8  DMDFATAPCIIEALNQRLM----HGVFGYSRWKNDEF-LAAIAHWFSTQHYTAIDSQTVV 62

Query: 81 LSAGASDGI 89
                  +
Sbjct: 63 YGPSVIYMV 71

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
           +E+  + I+PG  +G+  G    R        KL+  +      
Sbjct: 314 IEQEKVAIMPGYTYGE-EGRGFVRLNAGCPRSKLEKGVAGLINA 356

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 12/76 (15%)

Query: 350 MVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI 409
           +      +   ++    Q    A+  ++                       L+E+  + I
Sbjct: 273 IADKMNAAFPELNWQIPQSTYLAWLDLR-----------PLNIDDNALQKALIEQEKVAI 321

Query: 410 VPGAGFGQVPGTYHFR 425
           +PG  +G+  G    R
Sbjct: 322 MPGYTYGE-EGRGFVR 336

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 23  DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
            P    P+   +R               Y+ S GI  +R   A Y  RR       ++V+
Sbjct: 37  QPDLKTPEVFFERIYENKPEVVY-----YSHSAGIWELREAFASYYKRRQRVDVKPENVL 91

Query: 81  LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
           ++ G S+ I     ++    D     +L+  P Y  Y+A      ++ I       + + 
Sbjct: 92  VTNGGSEAILFSFAVIANPGD----EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFA 147

Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
                      E+  +   + IV+ NP NPTG V  K+ ++ +++ A R  LFL  DEVY
Sbjct: 148 ------IPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVY 201

Query: 201 QDNVY 205
            + V+
Sbjct: 202 SEIVF 206

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 451 LYAFESLERTGICIVPGAGFGQVPGTY--HFRTTILPQPEKLKAMLEKFREFHEEFLA 506
           +    +++     + P  GF   PG      R   + + + L   ++   E  + F +
Sbjct: 332 MLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 389

>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} Length = 316

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Transaldolase
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 33/153 (21%)

Query: 341 LDSLKQRAKMVADT--FNSIE-----GMSCNP------VQGAMYAFPQMKLPAKAIAKAK 387
           L SL+Q   +VADT    +++       + NP       Q   Y     KL   A+A AK
Sbjct: 4   LTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYR----KLIDDAVAWAK 59

Query: 388 AEGKCPS--VLYAFELLERTGIC----IVPGAGFGQVPGTYHFRQQVW-------WRHYT 434
            +    +  ++ A + L          +VPG    +V     +  +          + Y 
Sbjct: 60  QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN 119

Query: 435 QRAIAKAKAEGKCPSV---LYAFESLERTGICI 464
              I+  +   K  S    + A E LE+ GI  
Sbjct: 120 DAGISNDRILIKLASTWQGIRAAEQLEKEGINC 152

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEE 503
           + +  I    G  FG   G    R  +      ++  LE+  +  ++
Sbjct: 347 IHKAQIFFDEGYIFGD-GGIGFERINLAAPSSVIQESLERLNKALKD 392

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 12/65 (18%)

Query: 361 MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPG 420
           +    ++G    +   +             K         ++ +  I    G  FG   G
Sbjct: 317 IKAPLIEGTYLQWIDFR-----------ALKMDHKAMEEFMIHKAQIFFDEGYIFGD-GG 364

Query: 421 TYHFR 425
               R
Sbjct: 365 IGFER 369

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 51/397 (12%), Positives = 102/397 (25%), Gaps = 93/397 (23%)

Query: 29  DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDG 88
            + ++ +A+L+   G S  +         +  +  +++    G   D    +     S  
Sbjct: 33  LIDEKDKALLNTYIGSSYFAEK-------VNEYGLKHLG---GDEND--KCVGFNRTSSA 80

Query: 89  IKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER 148
           I + +  L      K    L  +P +P    S    N +    Y +  K     + E+  
Sbjct: 81  ILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAK----YFESDK-----VGEILN 128

Query: 149 SITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG 208
            I +     +   I+  +  +    V+  EN + +I  A  ++       V+ D+     
Sbjct: 129 KIDK-----DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAI-----VFVDDASGAR 176

Query: 209 SKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI 268
                   V +   +P      A  +  S   + E    G  +    L   +     K  
Sbjct: 177 --------VRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFG 228

Query: 269 SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP 328
                P +                     RA    +  R                     
Sbjct: 229 LEAQPPLLA-----------------GIYRALKNFNLER--------------------- 250

Query: 329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKA 388
              +     ++   S  ++        +    +               K     I K   
Sbjct: 251 -IRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIE 309

Query: 389 EGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
                     F LL+  GI  +  AG      +   R
Sbjct: 310 I--------GFNLLKNYGIITITVAGMP--GASKSLR 336

>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus) [TaxId: 10090]} Length = 319

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Transaldolase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 30/138 (21%)

Query: 339 SVLDSLKQRAKMVADT--FNSIE-----GMSCNP------VQGAMYAFPQMKLPAKAIAK 385
           S LD LKQ   +VADT  FN+I+       + NP       Q   Y     +L  +AIA 
Sbjct: 1   SALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQ----ELVEEAIAY 56

Query: 386 AKAEGKCPS------VLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVW-------WRH 432
            K  G          +   F L     +  +PG    +V     F +             
Sbjct: 57  GKKLGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIEL 116

Query: 433 YTQRAIAKAKAEGKCPSV 450
           Y +  + K +   K  S 
Sbjct: 117 YKEAGVGKDRILIKLSST 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	509
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.93
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.93
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.91
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.9
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.9
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.87
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.87
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.87
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.87
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.87
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.85
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.8
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.79
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.78
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.78
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.76
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.75
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.73
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.73
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.73
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.72
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.72
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.71
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.7
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.69
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.69
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.69
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.69
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.68
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.68
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.68
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.68
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.67
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.66
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.66
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.66
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.65
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.63
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.63
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.62
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.6
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.59
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.59
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.58
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.57
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.57
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.55
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.54
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.51
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.49
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.48
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.41
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.34
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.28
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.25
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.09
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.96
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.57
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.46
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.73
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.57
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.42
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	84.34
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.13
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.61
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.38
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	82.03
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.18

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.1e-51  Score=424.20  Aligned_cols=348  Identities=22%  Similarity=0.363  Sum_probs=298.6

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +|+|+|  |+.+++++.++++.   + .++|+++.|.+++|+++++++.+++|+.+++++|++|+|+++++..+++++++
T Consensus        37 ~G~p~~~~p~~v~~a~~~~~~~---~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~  112 (388)
T d1j32a_          37 AGEPDFNTPKHIVEAAKAALEQ---G-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE  112 (388)
T ss_dssp             CSSCSSCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhC
Confidence            378887  58999999999876   3 34599999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    +|+++.|+|.+|...++..|.+++.++..++++|.+|+++|++.+++     +++++++++||||||.+++.+
T Consensus       113 ~gd----~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~-----~~~~~~~~~P~NPTG~~~~~~  183 (388)
T d1j32a_         113 PGD----EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPD  183 (388)
T ss_dssp             TTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHH
T ss_pred             CCC----EEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC-----CCeEEEECCCCCCCCcccchh
Confidence            999    99999999999999999999999999998888899999999998877     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++. .+.++....++.     ..++|+++||||.| |+||+|+||++   +++
T Consensus       184 ~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~-~~~s~~~~~~~~-----~~~~i~~~S~SK~~-~~~GlRvG~~~---~~~  253 (388)
T d1j32a_         184 EVRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA-----YERSVVCSGFAKTY-AMTGWRVGFLA---GPV  253 (388)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HHTEEEEEESTTTT-TCTTTCCEEEE---CCH
T ss_pred             hhhhhhcccccCCeEEEchhhhhcccccCC-CCCCHHHhCccc-----ccceeEecCChhhh-hcchhHeEEEE---ECH
Confidence            999999999999999999999999998753 445554433221     12489999999999 79999999998   899


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+.+... ...+++..                                  .|.++...+          ....+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~----------------------------------~q~a~~~~~----------~~~~~~~  289 (388)
T d1j32a_         254 PLVKAATKIQGHSTSNVCTF----------------------------------AQYGAIAAY----------ENSQDCV  289 (388)
T ss_dssp             HHHHHHHHHHHTTTCSCCHH----------------------------------HHHHHHHHH----------HSCSHHH
T ss_pred             HHHHHHHHhhhhccccccHH----------------------------------HHHHHhhcc----------cchHHHH
Confidence            99998887665 34455555                                  444433332          2223458


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++.++.++++++.+.+.|++++|+.+..|+||+|+|++++.           ...++.+++.++++++||.++||..|+.
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~-----------~~~~~~~~~~~ll~~~gV~v~pG~~F~~  358 (388)
T d1j32a_         290 QEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAK-----------TGRSSLDFCSELLDQHQVATVPGAAFGA  358 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGG-----------GTCCHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCC-----------CCCCHHHHHHHHHHhCCEEEEeccccCC
Confidence            89999999999999999999989999999999999977651           1235667788999999999999999887


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      ++          ++|++|+.++++|+++++||
T Consensus       359 ------------------------------------------------~~----------~~Rls~~~~~e~l~~al~rl  380 (388)
T d1j32a_         359 ------------------------------------------------DD----------CIRLSYATDLDTIKRGMERL  380 (388)
T ss_dssp             ------------------------------------------------TT----------BEEEECCSCHHHHHHHHHHH
T ss_pred             ------------------------------------------------CC----------eEEEEEeCCHHHHHHHHHHH
Confidence                                                            55          99999999999999999999


Q ss_pred             HHHHHHH
Q psy13922        498 REFHEEF  504 (509)
Q Consensus       498 ~~~~~~~  504 (509)
                      +++++.+
T Consensus       381 ~~~l~~l  387 (388)
T d1j32a_         381 EKFLHGI  387 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999864

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-51  Score=423.21  Aligned_cols=367  Identities=23%  Similarity=0.421  Sum_probs=305.8

Q ss_pred             hHHHHHHHHhhc-CCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCC
Q psy13922          5 FSLSLQVLALVS-LPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADW   76 (509)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~   76 (509)
                      .|.||+++.++. .+++|    |.|++  |+.+++++.+++.+   + .++|+++.|.++||+++|+++..+++.. ..+
T Consensus        11 ~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~---~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~   86 (388)
T d1gdea_          11 ASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDK---G-LTHYGPNIGLLELREAIAEKLKKQNGIEADPK   86 (388)
T ss_dssp             CCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT
T ss_pred             ccHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhc---C-ccCCCCCcCCHHHHHHHHHHHHhhccccCCCh
Confidence            468999998775 45554    77766  67899999999887   3 3459999999999999999998877654 456


Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      ++|++|+|+++++..++.+++++||    +|+++.|+|..|...++..|++++.+|++++++|++|+++|++.+++    
T Consensus        87 ~~i~~t~G~~~~l~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----  158 (388)
T d1gdea_          87 TEIMVLLGANQAFLMGLSAFLKDGE----EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD----  158 (388)
T ss_dssp             TSEEEESSTTHHHHHHHTTTCCTTC----EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT----
T ss_pred             heeeeccCcchHHHHHHHHhcCCCC----EEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc----
Confidence            6899999999999999999999999    99999999999999999999999999998888899999999998876    


Q ss_pred             CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec
Q psy13922        157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC  236 (509)
Q Consensus       157 ~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  236 (509)
                       +++++++++||||||.++|++++++|+++|++++++||+||+|.++.+.+. .+.++.++...      ..++|+++||
T Consensus       159 -~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~-~~~~~~~~~~~------~~~~i~~~S~  230 (388)
T d1gdea_         159 -KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA-RHYSIASLDGM------FERTITVNGF  230 (388)
T ss_dssp             -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSTTC------GGGEEEEEES
T ss_pred             -CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC-CCCChhhccCC------CCeEEEEeCC
Confidence             799999999999999999999999999999999999999999999988643 44454443211      2359999999


Q ss_pred             ccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccch
Q psy13922        237 SKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV  315 (509)
Q Consensus       237 SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  315 (509)
                      ||.| |+||+|+||++   +++++++.+..... ...+++.+                                  .|.+
T Consensus       231 SK~~-~~~GlR~G~ii---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~  272 (388)
T d1gdea_         231 SKTF-AMTGWRLGFVA---APSWIIERMVKFQMYNATCPVTF----------------------------------IQYA  272 (388)
T ss_dssp             TTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTCSCCHH----------------------------------HHHH
T ss_pred             hhhc-cCccccEEEEE---eeccchhhhhhcccccccccccc----------------------------------chhh
Confidence            9999 79999999998   89999998887766 34455555                                  4444


Q ss_pred             hhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcH
Q psy13922        316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSV  395 (509)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~  395 (509)
                      ...++.     +   ..+.++.+..++.+.+++..+.+.|... ++.+..|+|++|+|++++  .        .+ .+++
T Consensus       273 ~~~~l~-----~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~--~--------~~-~~~~  332 (388)
T d1gdea_         273 AAKALK-----D---ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR--D--------TG-LTSK  332 (388)
T ss_dssp             HHHHHT-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCG--G--------GT-CCHH
T ss_pred             HHHHHh-----h---ccchhHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECC--C--------CC-CCHH
Confidence            444443     1   3445557888889999999999999988 788888999999998775  1        12 2466


Q ss_pred             HHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCC
Q psy13922        396 LYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPG  475 (509)
Q Consensus       396 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      +++..+++++||.++||..|+.                                                .+.+      
T Consensus       333 ~~~~~ll~e~gV~v~PG~~F~~------------------------------------------------~~~~------  358 (388)
T d1gdea_         333 KFSELMLKEARVAVVPGSAFGK------------------------------------------------AGEG------  358 (388)
T ss_dssp             HHHHHHHHHTCEECEEGGGGCG------------------------------------------------GGTT------
T ss_pred             HHHHHHHHhCCEEEEechhhCC------------------------------------------------CCCC------
Confidence            7778889999999999999987                                                3444      


Q ss_pred             ceeEEEEeecChHHHHHHHHHHHHHHHHHH
Q psy13922        476 TYHFRTTILPQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       476 ~~~~Rls~~~~~~~i~~~~~~l~~~~~~~~  505 (509)
                        |||+|++.++++|+++++||++++++++
T Consensus       359 --~iRis~~~~~e~l~~al~rL~~~l~e~k  386 (388)
T d1gdea_         359 --YVRISYATAYEKLEEAMDRMERVLKERK  386 (388)
T ss_dssp             --BEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             --EEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence              9999999999999999999999997643

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-50  Score=413.86  Aligned_cols=341  Identities=22%  Similarity=0.371  Sum_probs=287.1

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +|+|+|  |+.+++++.+++.+   +. .+|+++.|.++||+++++++..++++.+++++|++|+|+++++..+++++++
T Consensus        38 ~g~p~~~~p~~i~~a~~~~~~~---~~-~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~  113 (382)
T d1b5pa_          38 AGEPDFDTPEHVKEAARRALAQ---GK-TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD  113 (382)
T ss_dssp             CSSCSSCCCHHHHHHHHHHHHT---TC-CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHhc---CC-cCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCC
Confidence            488887  67999999999887   33 4599999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|++++|+|.+|...++.+|.+++.++.+++++|.+|++.+++.+.+     +++++++++||||||.+++.+
T Consensus       114 ~gd----~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-----~~~~i~~~~P~NPTG~~~s~~  184 (382)
T d1b5pa_         114 PGD----EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKE  184 (382)
T ss_dssp             TTC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHH
T ss_pred             CCC----EEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC-----CCeEEEECCCCCCcchhCCHH
Confidence            998    99999999999999999999999999998888899999999998876     799999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|++||++||+||+|.++.+++. ...+. ...        ..++|+++|+||.| |+||+|+||++   +++
T Consensus       185 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~-~~~--------~~~~i~~~s~SK~~-~~~GlR~G~~~---~~~  250 (382)
T d1b5pa_         185 VLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPG-RVA--------PEHTLTVNGAAKAF-AMTGWRIGYAC---GPK  250 (382)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGG-GTC--------TTTEEEEEESTTTT-TCGGGCCEEEE---CCH
T ss_pred             HHHHHHHHHHHcCeEEEEEccccceecCCC-CCCHH-HcC--------CCCEEEEecchhhc-cCcHhheEEEE---ECH
Confidence            999999999999999999999999998753 23222 211        22499999999999 79999999998   899


Q ss_pred             HHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchh-hcccCCCCCCCCchHHHHHH
Q psy13922        259 GVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM-DCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       259 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++++.+.+... ...+++..                                  .+.+. ..+..        ......+
T Consensus       251 ~~i~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~--------~~~~~~~  288 (382)
T d1b5pa_         251 EVIKAMASVSRQSTTSPDTI----------------------------------AQWATLEALTN--------QEASRAF  288 (382)
T ss_dssp             HHHHHHHHHHHTTTCSCCHH----------------------------------HHHHHHHHHHC--------HHHHHHH
T ss_pred             HHHHHHHHHHHhcccCcccc----------------------------------ccccccccccc--------ccchhHH
Confidence            99998887665 34445554                                  22222 22211        2334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG  416 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  416 (509)
                      .+..++.++.+++.+.+.+... |+.+..|+||+|+|+++.            +...+...+.+.|.++||.++||+.|+
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~~~------------~~~~~~~~~~~~l~e~gV~v~PG~~F~  355 (382)
T d1b5pa_         289 VEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTS------------PIAPDEVRAAERLLEAGVAVVPGTDFA  355 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECT------------TTCSSHHHHHHHHHHTTEECEESGGGT
T ss_pred             HHHHHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEeCC------------CCCCCHHHHHHHHHHCCEEEEeCcccC
Confidence            7788889999999999999887 889999999999998885            222344445667778899999999988


Q ss_pred             CCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHH
Q psy13922        417 QVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEK  496 (509)
Q Consensus       417 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~  496 (509)
                      .                                                .+          +||++++.++++|+++++|
T Consensus       356 ~------------------------------------------------~~----------~iRis~~~~~e~l~~al~r  377 (382)
T d1b5pa_         356 A------------------------------------------------FG----------HVRLSYATSEENLRKALER  377 (382)
T ss_dssp             C------------------------------------------------TT----------EEEEECCSCHHHHHHHHHH
T ss_pred             C------------------------------------------------CC----------eEEEEEcCCHHHHHHHHHH
Confidence            7                                                45          9999999999999999999


Q ss_pred             HHHHH
Q psy13922        497 FREFH  501 (509)
Q Consensus       497 l~~~~  501 (509)
                      |++++
T Consensus       378 l~~~L  382 (382)
T d1b5pa_         378 FARVL  382 (382)
T ss_dssp             GGGGC
T ss_pred             HHHhC
Confidence            98763

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.3e-49  Score=407.77  Aligned_cols=365  Identities=25%  Similarity=0.430  Sum_probs=292.9

Q ss_pred             hHHHHHHHHhhc-----CCCC----CCCC---CC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhc
Q psy13922          5 FSLSLQVLALVS-----LPQL----FDDP---RF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD   70 (509)
Q Consensus         5 ~~~~~~~~~~~~-----~~~~----~~~~---~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~   70 (509)
                      .+.||.++..+.     ...+    +|+|   +|  |+.+++++.+++.+   + .++|+++.|.++||+++++++++++
T Consensus        12 ~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~---~-~~~Y~~~~G~~~LR~aia~~~~~~~   87 (395)
T d1xi9a_          12 EYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE---G-HNYYGDSEGLPELRKAIVEREKRKN   87 (395)
T ss_dssp             CC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCCCCHHHHHHHHHhhhhcc
Confidence            345666655432     2233    3665   45  67899999999876   3 3459999999999999999999999


Q ss_pred             CCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHH
Q psy13922         71 GQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSI  150 (509)
Q Consensus        71 g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i  150 (509)
                      |+.+++++|++|+|+++++.+++.++.++||    .|++++|+|..|...++..|++++.++...+++|.+|++.+++.+
T Consensus        88 g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd----~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~  163 (395)
T d1xi9a_          88 GVDITPDDVRVTAAVTEALQLIFGALLDPGD----EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI  163 (395)
T ss_dssp             CCCCCGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHC
T ss_pred             cccccccccccccccchhhhhhhhhhcCCCC----EEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhh
Confidence            9999999999999999999999999999999    999999999999999999999999999888778999999999988


Q ss_pred             HhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCcee
Q psy13922        151 TEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMEL  230 (509)
Q Consensus       151 ~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  230 (509)
                      .+     +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++  ...+...+..       ..++
T Consensus       164 ~~-----~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-------~~~v  229 (395)
T d1xi9a_         164 TD-----RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG--EHISPGSLTK-------DVPV  229 (395)
T ss_dssp             CT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS--CCCCHHHHCS-------SSCE
T ss_pred             cc-----cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccc--cccchhhcCC-------CCCE
Confidence            76     79999999999999999999999999999999999999999999998864  3344444322       3459


Q ss_pred             EEEEecccccCCCCCCeeEEEeeecCCHHHHHHH----HHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcc
Q psy13922        231 ASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML----HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGC  306 (509)
Q Consensus       231 i~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (509)
                      |+++||||.| |+||+|+||+++. .+...+..+    ........+++.+                             
T Consensus       230 i~~~S~SK~~-~~~GlRvG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  278 (395)
T d1xi9a_         230 IVMNGLSKVY-FATGWRLGYMYFV-DPENKLSEVREAIDRLARIRLCPNTP-----------------------------  278 (395)
T ss_dssp             EEEEESTTTT-CCGGGCCEEEEEE-CTTCTTHHHHHHHHHHHHHTCCSCSH-----------------------------
T ss_pred             EEEeCcchhc-ccchhhcEeeEec-CHHHHHHHHHHHHHHhhcCCCCcCHH-----------------------------
Confidence            9999999999 7999999998742 232222222    2223344566666                             


Q ss_pred             cCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHH
Q psy13922        307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKA  386 (509)
Q Consensus       307 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~  386 (509)
                           +|.++..++..          ..+|+++.++.++++++.+.+.|++++++.+..|+|++|+|++++..       
T Consensus       279 -----~q~a~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~-------  336 (395)
T d1xi9a_         279 -----AQFAAIAGLTG----------PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG-------  336 (395)
T ss_dssp             -----HHHHHHHHHHS----------CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSC-------
T ss_pred             -----HHHHHHHHhcC----------CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCC-------
Confidence                 45544443321          12358889999999999999999999778888999999999887622       


Q ss_pred             hhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccC
Q psy13922        387 KAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVP  466 (509)
Q Consensus       387 ~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (509)
                         ...++.+++.++++++||.++||..|+.                                                .
T Consensus       337 ---~~~~~~~~~~~ll~~~gV~v~PG~~Fg~------------------------------------------------~  365 (395)
T d1xi9a_         337 ---PWKNDKEFVLDVLHNAHVLFVHGSGFGE------------------------------------------------Y  365 (395)
T ss_dssp             ---SCSSHHHHHHHHHHHHCEECEEGGGGCG------------------------------------------------G
T ss_pred             ---CCCCHHHHHHHHHHhCCEEEEcChhhCC------------------------------------------------C
Confidence               2235667788999999999999999987                                                4


Q ss_pred             CCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHH
Q psy13922        467 GAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       467 ~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~  503 (509)
                      +.+        ||||+++.+++.|+++++||++++++
T Consensus       366 ~~~--------~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         366 GAG--------HFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             GTT--------BEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCC--------EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            444        99999999999999999999999874

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.1e-48  Score=404.89  Aligned_cols=374  Identities=20%  Similarity=0.335  Sum_probs=296.4

Q ss_pred             hHHHHHHHHhhc---CC-CCC----CCCCC------CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhc
Q psy13922          5 FSLSLQVLALVS---LP-QLF----DDPRF------PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRD   70 (509)
Q Consensus         5 ~~~~~~~~~~~~---~~-~~~----~~~~~------p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~   70 (509)
                      ++++|.++..+.   .| ++|    |.|++      ++.+++++.+.+..   ...++|++..|.++||+++|+++++++
T Consensus        13 ~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~G~~~LReaia~~~~~~~   89 (412)
T d1bw0a_          13 FNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS---QECNGYFPTVGSPEAREAVATWWRNSF   89 (412)
T ss_dssp             CCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT---TCSSSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhcCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhC---CCCCCCCCCcCCHHHHHHHHHHHHHhc
Confidence            356777776553   12 122    55543      45678888877776   555669999999999999999999886


Q ss_pred             C------CCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHH
Q psy13922         71 G------QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS  144 (509)
Q Consensus        71 g------~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  144 (509)
                      +      ..+++++|++|+|+++++..++++++++||    .|++++|+|..|...++.+|++++.++++++++|.++++
T Consensus        90 ~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~  165 (412)
T d1bw0a_          90 VHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGD----YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLD  165 (412)
T ss_dssp             CCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHH
T ss_pred             CcccccCCCCCCCeEEEecccccchhhhhhhhhcccc----ceeeeeccchhhhhhhhccCccccccccccccccchhhH
Confidence            4      457889999999999999999999999999    999999999999999999999999999998888999999


Q ss_pred             HHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCC
Q psy13922        145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEP  224 (509)
Q Consensus       145 ~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~  224 (509)
                      .+++.+..     ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++........ ....   .
T Consensus       166 ~l~~~~~~-----~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~-~~~~---~  236 (412)
T d1bw0a_         166 EIRRLKDD-----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT-SVAD---F  236 (412)
T ss_dssp             HHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCC-CTTS---S
T ss_pred             HHHhhhhc-----cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccc-cccc---c
Confidence            99988776     7999999999999999999999999999999999999999999999997643222111 1111   1


Q ss_pred             CCCceeEEEEecccccCCCCCCeeEEEeeec---CCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHH
Q psy13922        225 YKSMELASFMSCSKGYMGECGLRGGYSEVIN---LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQA  301 (509)
Q Consensus       225 ~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (509)
                      ....++++++|+||.+ |++|+|+||+++..   ....++...........+++..                        
T Consensus       237 ~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  291 (412)
T d1bw0a_         237 ETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTV------------------------  291 (412)
T ss_dssp             CCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHH------------------------
T ss_pred             ccccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccCCchh------------------------
Confidence            1234588899999999 79999999997411   1234555554444433344444                        


Q ss_pred             hhhcccCcccccch-hhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCH
Q psy13922        302 VLDGCRGQSVGQTV-MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPA  380 (509)
Q Consensus       302 ~~~~~~~~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~  380 (509)
                                .+++ ...+.+          ...++++++++.++++++.+.+.|.+.+|+.+..|+||+|+|++++.+.
T Consensus       292 ----------~~~~~~~~~~~----------~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~  351 (412)
T d1bw0a_         292 ----------VQAALGEALLN----------TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK  351 (412)
T ss_dssp             ----------HHHHHHHHHHS----------SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG
T ss_pred             ----------hhhhccccccc----------ccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhh
Confidence                      2222 222211          2334588999999999999999999887999999999999998876332


Q ss_pred             HHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcc
Q psy13922        381 KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERT  460 (509)
Q Consensus       381 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (509)
                             ..+..++.+++.++++++||.++||+.|+.                                           
T Consensus       352 -------~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-------------------------------------------  381 (412)
T d1bw0a_         352 -------YRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------------------------------  381 (412)
T ss_dssp             -------BSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------------------------------
T ss_pred             -------cCCCCCHHHHHHHHHHhCCEEEEeccccCC-------------------------------------------
Confidence                   124456788889999999999999999887                                           


Q ss_pred             cccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHHHHH
Q psy13922        461 GICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~~~  504 (509)
                           ++          ||||||+.++++|+++++||+++++++
T Consensus       382 -----~g----------~iRis~~~~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         382 -----PG----------FTRLTTTRPVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             -----TT----------EEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -----CC----------eEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence                 55          999999999999999999999998765

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=1.6e-49  Score=412.02  Aligned_cols=385  Identities=15%  Similarity=0.201  Sum_probs=297.6

Q ss_pred             HHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-CcE
Q psy13922          7 LSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QDV   79 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~i   79 (509)
                      ..+++.+++..+..|    |.|++  |+.+++++.+++.+... ..++|+++.|.++||+++|+++.+++|..+++ ++|
T Consensus        15 ~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~-~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I   93 (418)
T d2r5ea1          15 VWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDP-LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEV   93 (418)
T ss_dssp             HHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSE
T ss_pred             HHHHHHHHhcCCCCEEccCCCCCCCCCHHHHHHHHHHHhCCCc-cCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceE
Confidence            345555555444443    78876  57899999999887432 34569999999999999999999999999885 799


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCC--------CCCCCHHHHHHHHH
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK--------QWGLPISELERSIT  151 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~L~~~i~  151 (509)
                      ++|+|+++++..++++++++||    .|+++.|+|..|...+...|.+++.++++++.        .|.++.+.+.....
T Consensus        94 ~it~G~~~al~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (418)
T d2r5ea1          94 LVTVGAYEALYATIQGHVDEGD----EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN  169 (418)
T ss_dssp             EEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC
T ss_pred             EEcCCCchhhhhhhhhcccccc----ceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh
Confidence            9999999999999999999999    99999999999999999999999999986542        35677888877766


Q ss_pred             hhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeE
Q psy13922        152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELA  231 (509)
Q Consensus       152 ~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  231 (509)
                      .     +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++..+..      ...+++
T Consensus       170 ~-----~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~s~~~~~~------~~~~~i  237 (418)
T d2r5ea1         170 E-----KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRICTLPG------MWERTI  237 (418)
T ss_dssp             T-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTT------TGGGEE
T ss_pred             c-----cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCC-cccccccccc------ccceee
Confidence            5     799999999999999999999999999999999999999999999998753 3344433211      134599


Q ss_pred             EEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcc
Q psy13922        232 SFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQS  310 (509)
Q Consensus       232 ~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (509)
                      +++|+||.+ |+||+|+||++   +++++++.+.+... ...+.+.+                                 
T Consensus       238 ~~~S~SK~~-~~pGlRiG~~~---~~~~~i~~~~~~~~~~~~~~~~~---------------------------------  280 (418)
T d2r5ea1         238 TIGSAGKTF-SLTGWKIGWAY---GPEALLKNLQMVHQNCVYTCATP---------------------------------  280 (418)
T ss_dssp             EEEEHHHHT-TCGGGCCEEEE---SCHHHHHHHHHHHTTTTCSCCHH---------------------------------
T ss_pred             eeecCCccc-cCCCccccccc---ccchhhhhhhhcccccccccccc---------------------------------
Confidence            999999999 79999999998   89999999988765 34455555                                 


Q ss_pred             cccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcC
Q psy13922        311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEG  390 (509)
Q Consensus       311 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g  390 (509)
                       .|.++...+....   .......++++++++.++.+++.+.+.|+++ |+++..|+||+|+|+++.-............
T Consensus       281 -~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~  355 (418)
T d2r5ea1         281 -IQEAIAVGFETEL---KRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETD  355 (418)
T ss_dssp             -HHHHHHHHHHHHH---TTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCC
T ss_pred             -hhhhccccccccc---cccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhccc
Confidence             2222111110000   0001112247888999999999999999998 9999999999999988741110000011122


Q ss_pred             CCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCC
Q psy13922        391 KCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGF  470 (509)
Q Consensus       391 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (509)
                      ..++.+++..+++++||.++||..|+.....                                           ..+.+ 
T Consensus       356 ~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~-------------------------------------------~~g~~-  391 (418)
T d2r5ea1         356 ARKDYRFTKWMTKSVGLQGIPPSAFYSEPNK-------------------------------------------HLGED-  391 (418)
T ss_dssp             SSHHHHHHHHHHHHHSEECBCGGGGSCGGGH-------------------------------------------HHHTT-
T ss_pred             ccCHHHHHHHHHHHCCEEEeCchhhCCCCCc-------------------------------------------cCCCC-
Confidence            3356778889999999999999999862100                                           01223 


Q ss_pred             CCCCCceeEEEEeecChHHHHHHHHHHHHHH
Q psy13922        471 GQVPGTYHFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       471 ~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                             ||||||+.++++|++++++|++++
T Consensus       392 -------~iRis~~~~~e~l~~a~~rl~~~l  415 (418)
T d2r5ea1         392 -------FVRYCFFKKDENLQKAAEILRKWK  415 (418)
T ss_dssp             -------EEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             -------EEEEEecCCHHHHHHHHHHHHHHH
Confidence                   999999999999999999999876

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=1e-47  Score=395.34  Aligned_cols=354  Identities=18%  Similarity=0.286  Sum_probs=284.6

Q ss_pred             CCCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         20 LFDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        20 ~~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      .+|+|+|  |+.|++++.+++++   +.+ +|++  |.++||+++++++++++|+++++++|++|+|+++++.+++++++
T Consensus        37 ~~g~pdf~~p~~v~~al~~~~~~---~~~-~Y~~--g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~  110 (394)
T d1c7na_          37 SVADMEFKNPPELIEGLKKYLDE---TVL-GYTG--PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT  110 (394)
T ss_dssp             CSSSCSSCCCHHHHHHHHHHHHH---CCC-SSBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHhC---CCc-CCCC--CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc
Confidence            4589998  57899999999987   433 4864  67899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC-CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT  176 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s  176 (509)
                      ++||    .|+++.|.|.++...+...|.+.+.++... +..|.+|.+.++..+...    ++++|++++||||||.+++
T Consensus       111 ~pgd----~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~i~l~~P~NPTG~v~s  182 (394)
T d1c7na_         111 KPGD----GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK----NNKALLFCSPHNPVGRVWK  182 (394)
T ss_dssp             CTTC----EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT----TEEEEEEESSBTTTTBCCC
T ss_pred             cccc----ccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccc----cceEEEecccccccceecc
Confidence            9999    999999999999999999999999988653 445678999888877653    7999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecC
Q psy13922        177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL  256 (509)
Q Consensus       177 ~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~  256 (509)
                      .+++++|+++|++++++||+||+|.++.+++. .+.+......+.     ..+++++.|+||.| |++|+|+||+++  .
T Consensus       183 ~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~-----~~~~i~~~s~SK~~-~~~G~R~g~~~~--~  253 (394)
T d1c7na_         183 KDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQL-----ADKTITFTAPSKTF-NIAGMGMSNIII--K  253 (394)
T ss_dssp             HHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HTTEEEEECSHHHH-TCGGGCCEEEEC--C
T ss_pred             HHHhhhhhccccccceeEeccccccccccCCc-cccchhhhhccc-----ccceeecccccccc-cccccccccccc--c
Confidence            99999999999999999999999999998753 233322222222     12388899999999 799999999974  6


Q ss_pred             CHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ++.+.+.+..........+...                 .               .+.+....          .....++
T Consensus       254 ~~~i~~~~~~~~~~~~~~~~~~-----------------~---------------~~~a~~~~----------~~~~~~~  291 (394)
T d1c7na_         254 NPDIRERFTKSRDATSGMPFTT-----------------L---------------GYKACEIC----------YKECGKW  291 (394)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCH-----------------H---------------HHHHHHHH----------HHHCHHH
T ss_pred             Chhhhhhhhhhhhhcccccccc-----------------c---------------cchhhhhh----------hcchhhh
Confidence            7788888877665333222220                 0               11111111          1233445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGF  415 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f  415 (509)
                      .+++++.++++++.+.+.++. .+++.+..|+|++|+|++++.          .+. ++.+++..+++++||.++||+.|
T Consensus       292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~----------~~~-~~~~~~~~Ll~~~gV~v~pG~~F  360 (394)
T d1c7na_         292 LDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRA----------LKM-DHKAMEEFMIHKAQIFFDEGYIF  360 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGG----------GCC-CHHHHHHHHHHTTCCCCEEGGGG
T ss_pred             hcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCC----------CCC-CHHHHHHHHHHhCCEEEEcchhh
Confidence            788888888888998888876 467888899999999987751          122 46667788999999999999999


Q ss_pred             CCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHH
Q psy13922        416 GQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLE  495 (509)
Q Consensus       416 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~  495 (509)
                      +.                                                .+.+        |+|||++.++++|+++++
T Consensus       361 g~------------------------------------------------~~~~--------~iRis~~~~~e~i~eal~  384 (394)
T d1c7na_         361 GD------------------------------------------------GGIG--------FERINLAAPSSVIQESLE  384 (394)
T ss_dssp             CG------------------------------------------------GGTT--------EEEEECCSCHHHHHHHHH
T ss_pred             CC------------------------------------------------CCCC--------EEEEEEeCCHHHHHHHHH
Confidence            87                                                4545        999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy13922        496 KFREFHEEFL  505 (509)
Q Consensus       496 ~l~~~~~~~~  505 (509)
                      ||++++++++
T Consensus       385 rl~~~l~~Lk  394 (394)
T d1c7na_         385 RLNKALKDLK  394 (394)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998763

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-49  Score=406.68  Aligned_cols=385  Identities=19%  Similarity=0.258  Sum_probs=297.9

Q ss_pred             HHHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC-Cc
Q psy13922          6 SLSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QD   78 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~-~~   78 (509)
                      +...++.++++++.+|    |.|++  |+.+++++.+++.+  ....++|++..|.++||+++++++++++|+++++ ++
T Consensus        13 ~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~--~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~   90 (418)
T d1w7la_          13 NPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRN   90 (418)
T ss_dssp             CTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSS--CGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CHHHHHHHHhCCCCCEECCCCCCCCCCCHHHHHHHHHHHhC--CCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccc
Confidence            3445666777777665    78887  56899999998886  2334569999999999999999999999988885 68


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC----------CCCCCCCHHHHHH
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE----------SKQWGLPISELER  148 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----------~~~~~~d~~~L~~  148 (509)
                      |++|+|+++++..+++.++++|+    .|+++.|+|..|...+...|++++.++..+          +.+|.+|.+++..
T Consensus        91 I~it~G~~~al~~~~~~l~~~g~----~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  166 (418)
T d1w7la_          91 VLVTVGGYGALFTAFQALVDEGD----EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAG  166 (418)
T ss_dssp             EEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHH
T ss_pred             eeeccCcHHHHHHHHHhhccCCc----eeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhc
Confidence            99999999999999999999998    999999999999999999999999998654          2345677777766


Q ss_pred             HHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCc
Q psy13922        149 SITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM  228 (509)
Q Consensus       149 ~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (509)
                      ...+     +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++. .+.++.++. +.     ..
T Consensus       167 ~~~~-----~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~-~~~~~~~~~-~~-----~~  234 (418)
T d1w7la_         167 KFTS-----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLP-GM-----WE  234 (418)
T ss_dssp             HCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGST-TT-----GG
T ss_pred             cccc-----cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC-CCCCHHHcc-cc-----cc
Confidence            6555     788999999999999999999999999999999999999999999998753 445554432 11     23


Q ss_pred             eeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhccc
Q psy13922        229 ELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR  307 (509)
Q Consensus       229 ~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (509)
                      +++++.|+||.+ |+||+|+||++   +++++++.+.+... ...+++.+                              
T Consensus       235 ~~i~~~S~SK~~-~~pG~RvG~~v---~~~~~~~~l~~~~~~~~~~~~~~------------------------------  280 (418)
T d1w7la_         235 RTLTIGSAGKTF-SATGWKVGWVL---GPDHIMKHLRTVHQNSVFHCPTQ------------------------------  280 (418)
T ss_dssp             GEEEEEEHHHHT-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTSCCCHH------------------------------
T ss_pred             ccceecccCccc-cCCCCcccccc---cchhhhhhhccccccccccccch------------------------------
Confidence            599999999999 79999999998   89999999988776 34556666                              


Q ss_pred             CcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHH-H
Q psy13922        308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAK-A  386 (509)
Q Consensus       308 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~  386 (509)
                          .|.++..++.....   ......+++..+++.++++++.+.+.|+++ |+++.+|+||+|+|++++........ .
T Consensus       281 ----~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~  352 (418)
T d1w7la_         281 ----SQAAVAESFEREQL---LFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLP  352 (418)
T ss_dssp             ----HHHHHHHHHHHHHH---TTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCC
T ss_pred             ----hhHHHHHHhhhccc---cccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECcccccccchhc
Confidence                22222211110000   001122347888999999999999999998 99999999999999877411100000 0


Q ss_pred             hhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccC
Q psy13922        387 KAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVP  466 (509)
Q Consensus       387 ~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (509)
                      ...+...+..++..+|+++||.++||+.|+.....                                           ..
T Consensus       353 ~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~-------------------------------------------~~  389 (418)
T d1w7la_         353 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ-------------------------------------------KH  389 (418)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH-------------------------------------------TT
T ss_pred             cccccccHHHHHHHHHHHCCEEEEcchhhcCCCcc-------------------------------------------CC
Confidence            01122335778899999999999999999862100                                           01


Q ss_pred             CCCCCCCCCceeEEEEeecChHHHHHHHHHHHHHH
Q psy13922        467 GAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       467 ~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                      +.+        ||||||+.+++++++++++|+++.
T Consensus       390 ~~~--------~iRis~~~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         390 FDH--------YIRFCFVKDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             SCS--------EEEEECCCCHHHHHHHHHHHHHHH
T ss_pred             CCC--------EEEEEEcCCHHHHHHHHHHHHHHh
Confidence            223        999999999999999999998875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-46  Score=385.99  Aligned_cols=359  Identities=18%  Similarity=0.273  Sum_probs=298.2

Q ss_pred             HHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC-cE
Q psy13922          7 LSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV   79 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~-~i   79 (509)
                      .+.++..+++.++.|    |.|++  |+.+++++.+++.+   + .++|++..|.++||+++|+++++++|..++++ +|
T Consensus        15 ~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~---~-~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I   90 (382)
T d1u08a_          15 IFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQ---G-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDI   90 (382)
T ss_dssp             HHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHT---T-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTE
T ss_pred             HHHHHHHHhccCCCEEccCCCCCCCCCHHHHHHHHHHHhc---C-CCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceE
Confidence            456677777766654    78877  56889999888876   3 34599999999999999999999999988877 59


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCc
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNP  159 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~  159 (509)
                      ++|+|+++++.+++++++++||    .|+++.|+|..+...+...|.+++.++.++. +|.+|++++++.+.+     ++
T Consensus        91 ~vt~G~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~-----~~  160 (382)
T d1u08a_          91 TVTAGATEALYAAITALVRNGD----EVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLSE-----RT  160 (382)
T ss_dssp             EEESSHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCCT-----TE
T ss_pred             EeccchHHHHHHHHhhcccccc----eEEEecccccchhhhhhhccccceecccccc-cccCCHHHHhhhhcc-----Cc
Confidence            9999999999999999999999    9999999999999999999999888887654 678899999988777     79


Q ss_pred             eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccc
Q psy13922        160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKG  239 (509)
Q Consensus       160 ~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~  239 (509)
                      +++++++||||||.+++.+++++|+++|++++++++.|+.|..+.+.+... .+.......      ..++|++.|+||.
T Consensus       161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~-~~~~~~~~~------~~~~i~~~s~SK~  233 (382)
T d1u08a_         161 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH-ASVLAHPQL------RERAVAVSSFGKT  233 (382)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC-CCGGGSHHH------HTTEEEEEEHHHH
T ss_pred             cEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccc-ccccccccc------cCcEEEEeecccc
Confidence            999999999999999999999999999999999999999999988875432 222211111      1248999999999


Q ss_pred             cCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhc
Q psy13922        240 YMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC  318 (509)
Q Consensus       240 ~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  318 (509)
                      + |+||+|+||++   .++++++.+.+... ...+++.+                                  .|.++..
T Consensus       234 ~-~~pG~RiG~~v---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~a~~~  275 (382)
T d1u08a_         234 Y-HMTGWKVGYCV---APAPISAEIRKVHQYLTFSVNTP----------------------------------AQLALAD  275 (382)
T ss_dssp             T-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSCCHH----------------------------------HHHHHHH
T ss_pred             c-cCCcccchhhh---ccchhHHHHHhhhcccccccccc----------------------------------ccccccc
Confidence            9 79999999998   79999999987766 45677777                                  5555555


Q ss_pred             ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHH
Q psy13922        319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYA  398 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  398 (509)
                      ++.          ...++.+.+++.++++++.+.+.++.. |+.+.+|+||+|+|++++.          .+..++.+++
T Consensus       276 ~l~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~----------~~~~d~~e~~  334 (382)
T d1u08a_         276 MLR----------AEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSA----------VSTLDDVEFC  334 (382)
T ss_dssp             HHH----------HCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTT----------TCCSCHHHHH
T ss_pred             ccc----------cchHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCC----------CCCCCHHHHH
Confidence            543          122457888999999999999998876 8999999999999988762          2334677788


Q ss_pred             HHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCcee
Q psy13922        399 FELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYH  478 (509)
Q Consensus       399 ~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      .++++++||.++||+.|+..+                                              .+.+        |
T Consensus       335 ~~ll~e~gV~v~PG~~F~~~~----------------------------------------------~~~~--------~  360 (382)
T d1u08a_         335 QWLTQEHGVAAIPLSVFCADP----------------------------------------------FPHK--------L  360 (382)
T ss_dssp             HHHHHHSCEECEEGGGGCSSC----------------------------------------------CCSC--------E
T ss_pred             HHHHHHCCEEEEcchhhCCCC----------------------------------------------CCCC--------E
Confidence            889999999999999997621                                              2223        9


Q ss_pred             EEEEeecChHHHHHHHHHHHH
Q psy13922        479 FRTTILPQPEKLKAMLEKFRE  499 (509)
Q Consensus       479 ~Rls~~~~~~~i~~~~~~l~~  499 (509)
                      |||||+.++++|+++++||++
T Consensus       361 ~Ris~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         361 IRLCFAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             EEEECCSCHHHHHHHHHHHTT
T ss_pred             EEEEEeCCHHHHHHHHHHHhC
Confidence            999999999999999999986

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-46  Score=382.46  Aligned_cols=352  Identities=18%  Similarity=0.258  Sum_probs=282.8

Q ss_pred             CCCCCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         18 PQLFDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        18 ~~~~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      |-.+|+|+|  |+.+++++.+++..   +.+ +|++..| +++|+++++++.+++|.++++++|++|+|+++++..++.+
T Consensus         3 ~~~~~~~df~~p~~i~eal~~~~~~---~~~-~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~   77 (361)
T d1d2fa_           3 PFTISDMDFATAPCIIEALNQRLMH---GVF-GYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ   77 (361)
T ss_dssp             ECCSSSCSSCCCHHHHHHHHHHHTT---CCC-CCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred             CcCCCCCCCCCCHHHHHHHHHHHhC---CCC-CCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhh
Confidence            346788998  48999999999877   334 5999888 7899999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC-CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         96 LIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        96 l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ++++||    .|++++|+|..|...++..|.+++.++.+. .++|.+|++.+++.+.+.    +++++++++||||||.+
T Consensus        78 l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~----~~~~i~l~~p~NPTG~~  149 (361)
T d1d2fa_          78 WSETGE----GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP----ECKIMLLCSPQNPTGKV  149 (361)
T ss_dssp             SSCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST----TEEEEEEESSCTTTCCC
T ss_pred             cccccc----ccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccC----CceeEEecccccccccc
Confidence            999999    999999999999999999999999998764 346779999999998764    79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeee
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVI  254 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~  254 (509)
                      +|.+++++|+++|+++|++||+||+|.++.+++. ...++....        ..+++++.|+||.+ |++|+|+||+.+ 
T Consensus       150 ~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~--------~~~~v~~~s~SK~~-~~~g~R~g~~~~-  218 (361)
T d1d2fa_         150 WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNVA--------RGDWALLTSGSKSF-NIPALTGAYGII-  218 (361)
T ss_dssp             CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGTC--------CSSEEEEECSHHHH-TCGGGCCEEEEE-
T ss_pred             cchhhhhhhhhhhhhhheeeeecccccccccccc-ccccccccc--------cccccccccccccc-ccccccceeeec-
Confidence            9999999999999999999999999999988643 333333221        23488889999999 799999999874 


Q ss_pred             cCCHHHHHHH-HHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        255 NLDPGVKAML-HKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       255 ~~~~~~~~~l-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                       .++.....+ .......  ..++..                                  ++.+....          ..
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~a~~~~----------~~  253 (361)
T d1d2fa_         219 -ENSSSRDAYLSALKGRDGLSSPSVL----------------------------------ALTAHIAA----------YQ  253 (361)
T ss_dssp             -CSHHHHHHHHHHHHTTSCCCSCCHH----------------------------------HHHHHHHH----------HH
T ss_pred             -chhHHHHHHhhhcccccccccchhh----------------------------------hHHHHHHH----------hh
Confidence             555554443 3333322  222222                                  22221111          12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNS-IEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      ....+.++++..++++++.+.+.+.+ .+++.+.+|+|++|+|++++-          .++ ++.+++.++++++||.++
T Consensus       254 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~----------~~~-~~~~~~~~Ll~~~gv~v~  322 (361)
T d1d2fa_         254 QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRP----------LNI-DDNALQKALIEQEKVAIM  322 (361)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGG----------GCC-CHHHHHHHHHHTTCEECE
T ss_pred             ccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccC----------CCC-CHHHHHHHHHHhCCEEEE
Confidence            23345778888888988888887766 567888899999999987741          122 466778889999999999


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHH
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKL  490 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i  490 (509)
                      ||+.|+.                                                .+.+        |||+|++.++++|
T Consensus       323 pG~~F~~------------------------------------------------~~~~--------~vRis~~~~~e~l  346 (361)
T d1d2fa_         323 PGYTYGE------------------------------------------------EGRG--------FVRLNAGCPRSKL  346 (361)
T ss_dssp             EGGGGCG------------------------------------------------GGTT--------EEEEECCSCHHHH
T ss_pred             eccccCC------------------------------------------------CCCC--------EEEEEEcCCHHHH
Confidence            9999987                                                4545        9999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy13922        491 KAMLEKFREFHEEFL  505 (509)
Q Consensus       491 ~~~~~~l~~~~~~~~  505 (509)
                      ++++++|++++++++
T Consensus       347 ~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         347 EKGVAGLINAIRAVR  361 (361)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998763

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.7e-46  Score=380.88  Aligned_cols=337  Identities=24%  Similarity=0.389  Sum_probs=283.8

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +|+|.|  |+.+++++.+.+.+   +.+ +|+++.|.++||++++++++..++..+++++|++|+|+++++..+++++++
T Consensus        35 ~G~p~~~~p~~i~~~~~~~~~~---~~~-~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~  110 (375)
T d1o4sa_          35 AGEPDFPTPEPVVEEAVRFLQK---GEV-KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD  110 (375)
T ss_dssp             CSSCSSCCCHHHHHHHHHHHTT---CCC-CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred             CcCCCCCCCHHHHHHHHHHHhc---CCc-CCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhC
Confidence            378876  67899999988876   444 499999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +||    .|+++.|+|..+...+...|...+.++.+++++|.+|.+.++.....     ++++++++|||||||.+++.+
T Consensus       111 ~gd----~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~nP~NPTG~~~s~~  181 (375)
T d1o4sa_         111 PGD----EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-----KTKAVLINSPNNPTGVVYRRE  181 (375)
T ss_dssp             TTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-----TEEEEEEESSCTTTCCCCCHH
T ss_pred             CCC----EEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhcc-----CccEEEEeCCCCCccCCCCHH
Confidence            998    99999999999999999999999999999888899999988877666     789999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|++|+++||+||+|.++.++..  .........      ...++|+++|+||.| |+||+|+||++   +++
T Consensus       182 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~------~~~~~i~~~S~SK~~-~l~G~R~G~~~---~~~  249 (375)
T d1o4sa_         182 FLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FTSILDVSE------GFDRIVYINGFSKSH-SMTGWRVGYLI---SSE  249 (375)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTSBCSSC--CCCHHHHCS------SSTTEEEEEESTTTT-TCGGGCCEEEE---CCH
T ss_pred             HHHHHHHhHHHcCCceehHhhhcccccccc--ccccccccC------CCCCEEEEeechhhc-cCCcccccccc---ccc
Confidence            999999999999999999999999987643  333333211      134699999999999 79999999998   899


Q ss_pred             HHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHH
Q psy13922        259 GVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK  337 (509)
Q Consensus       259 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  337 (509)
                      ++++.+...... ....+..                                  .+.+......          .   +.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~----------~---~~  282 (375)
T d1o4sa_         250 KVATAVSKIQSHTTSCINTV----------------------------------AQYAALKALE----------V---DN  282 (375)
T ss_dssp             HHHHHHHHHHHHHTCSCCHH----------------------------------HHHHHHHHTT----------C---CC
T ss_pred             cchhhhhhhhcccccccccc----------------------------------chhhhhhhcc----------c---ch
Confidence            999888776652 2233333                                  2222222211          1   14


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       338 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ...++.++++++.+.+.|++. |+++..|+||+|+|++++.              ++.+++.++++++||.++||..|+.
T Consensus       283 ~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~~--------------~~~~~~~~ll~~~gV~v~pG~~F~~  347 (375)
T d1o4sa_         283 SYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRG--------------DDVKFCERLLEEKKVALVPGSAFLK  347 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECSS--------------CHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred             hhhHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECCC--------------CHHHHHHHHHHhCCEEEEEccccCC
Confidence            556678888999999999988 8999999999999987751              4566688999999999999998876


Q ss_pred             CCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHHHHHH
Q psy13922        418 VPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKF  497 (509)
Q Consensus       418 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~~~~l  497 (509)
                                                                      ++          ||||+++.++++|+++++||
T Consensus       348 ------------------------------------------------~g----------~iRis~~~~~e~l~~al~rl  369 (375)
T d1o4sa_         348 ------------------------------------------------PG----------FVRLSFATSIERLTEALDRI  369 (375)
T ss_dssp             ------------------------------------------------TT----------EEEEECCSCHHHHHHHHHHH
T ss_pred             ------------------------------------------------CC----------eEEEEEcCCHHHHHHHHHHH
Confidence                                                            55          99999999999999999999


Q ss_pred             HHHHH
Q psy13922        498 REFHE  502 (509)
Q Consensus       498 ~~~~~  502 (509)
                      +++++
T Consensus       370 ~~~l~  374 (375)
T d1o4sa_         370 EDFLN  374 (375)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99874

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=1.9e-46  Score=390.36  Aligned_cols=346  Identities=19%  Similarity=0.318  Sum_probs=276.5

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCC--CCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQ--PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE  123 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~  123 (509)
                      ..+|+++.|.++||+++|+++++++|.  .+++++|++|+|+++++..++++++++||    .|+++.|+|..+...+..
T Consensus        77 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd----~Vlv~~P~y~~~~~~~~~  152 (431)
T d1m7ya_          77 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGE----AVLIPTPYYPGFDRDLKW  152 (431)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHTTT
T ss_pred             hcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHHHH
Confidence            345999999999999999999999874  46788999999999999999999999999    999999999999888874


Q ss_pred             -cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        124 -FNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       124 -~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                       .|+++++++.+++++|.+|++.+++.+.+..+. .++++++++|||||||.+++++++++|+++|+++|++||+||+|.
T Consensus       153 ~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~  232 (431)
T d1m7ya_         153 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS  232 (431)
T ss_dssp             TTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG
T ss_pred             hcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccc
Confidence             589999999998888999999999999875443 578899999999999999999999999999999999999999999


Q ss_pred             cccccCCCccccHHHHHHHhCCCC---CCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEPY---KSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLA  278 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~  278 (509)
                      ++.+++ ..+.++.++..+.....   ...++++++|+||.| |++|+|+||++   ++++++.............+.. 
T Consensus       233 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~---~~~~~i~~~~~~~~~~~~~~~~-  306 (431)
T d1m7ya_         233 GTAFSS-PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIY---SNDDMVVAAATKMSSFGLVSSQ-  306 (431)
T ss_dssp             GGCCSS-SCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEE---ESCHHHHHHHHHHGGGSCCCHH-
T ss_pred             ccccCC-CCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceec---cchhhhHHHHHHHhcccccccc-
Confidence            999975 36778777655432211   124699999999999 79999999998   5555554444333333334443 


Q ss_pred             hhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13922        279 LVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI  358 (509)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  358 (509)
                                                       .+.++.+.+..       .....+++++.+..++++++.+.+.|++.
T Consensus       307 ---------------------------------~~~~~~a~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  346 (431)
T d1m7ya_         307 ---------------------------------TQHLLSAMLSD-------KKLTKNYIAENHKRLKQRQKKLVSGLQKS  346 (431)
T ss_dssp             ---------------------------------HHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------------------------ccchhhhhhcc-------chhhhhhhhhhhhhhhhhhhhhhhhhhcC
Confidence                                             22222222210       13334468889999999999999999986


Q ss_pred             CCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHH
Q psy13922        359 EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAI  438 (509)
Q Consensus       359 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~  438 (509)
                       |+.+.+|+||+|+|++++...      ......++.+++.++++++||.++||..|+.                     
T Consensus       347 -gi~~~~p~gg~f~w~~l~~~~------~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~---------------------  398 (431)
T d1m7ya_         347 -GISCLNGNAGLFCWVDMRHLL------RSNTFEAEMELWKKIVYEVHLNISPGSSCHC---------------------  398 (431)
T ss_dssp             -TCEECCCCSSSEEEEECGGGS------SSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---------------------
T ss_pred             -CcEEecCCceeEEEEECcccc------ccCcccCHHHHHHHHHHHCCEEEEeccccCC---------------------
Confidence             999999999999998885210      0001113456678899999999999999987                     


Q ss_pred             HHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHH
Q psy13922        439 AKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~  504 (509)
                                                 .+.+        ||||+|+ .++++|+++++||++++++|
T Consensus       399 ---------------------------~~~~--------~~Ri~~a~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         399 ---------------------------TEPG--------WFRVCFANLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             ---------------------------SSTT--------EEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------CCCC--------EEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence                                       3333        9999998 57789999999999999876

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4e-46  Score=386.48  Aligned_cols=372  Identities=17%  Similarity=0.297  Sum_probs=288.1

Q ss_pred             HHHHHHHHhhcCCCCC----CCCC---CCHH-HHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCC-CCC
Q psy13922          6 SLSLQVLALVSLPQLF----DDPR---FPDD-VKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP-ADW   76 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~---~p~~-v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~-~~~   76 (509)
                      |.+|+++++++.|.+|    |.|+   ||.. +.+++.++++.... ...+|+++.|.++||++||+++++++|+. +++
T Consensus        26 s~ir~~~~~~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~  104 (420)
T d1vp4a_          26 SIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILKLLERMYGITGLDE  104 (420)
T ss_dssp             CCHHHHTTTTTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCG
T ss_pred             cHHHHHHHHhCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCc-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCH
Confidence            5789999999888876    5443   5754 55666676665322 34469999999999999999999999986 789


Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      ++|++|+|+++++.+++.+++++||    .|+++.|+|..|...++..|++++.++.++.   ++|++.++..+......
T Consensus       105 ~~I~it~G~~~al~~~~~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~  177 (420)
T d1vp4a_         105 DNLIFTVGSQQALDLIGKLFLDDES----YCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKN  177 (420)
T ss_dssp             GGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHT
T ss_pred             HHeEeccchhhhHHHHHHhhhcccc----ccccccccccchhHHHHHHhhhccccccccc---ccccchhhhhhhhhHHH
Confidence            9999999999999999999999999    9999999999999999999999999998876   67888888776543221


Q ss_pred             ---CCceEE-EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEE
Q psy13922        157 ---CNPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS  232 (509)
Q Consensus       157 ---~~~~~i-vi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  232 (509)
                         .+++.+ ++++||||||.+++.+++++|+++|++++++||+||+|.++.+++. ...+......       ..++++
T Consensus       178 ~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~~~-------~~~~i~  249 (420)
T d1vp4a_         178 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKIGG-------PERVVL  249 (420)
T ss_dssp             TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHHHC-------TTTEEE
T ss_pred             hhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc-cccccccccc-------ccceeE
Confidence               234444 4689999999999999999999999999999999999999998754 3344433321       234888


Q ss_pred             EEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc-ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc
Q psy13922        233 FMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA-MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV  311 (509)
Q Consensus       233 i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (509)
                      ++|+||.+  ++|+|+||++   +++++++++.+.... ..+++..                                  
T Consensus       250 ~~s~sk~~--~~G~RiG~~~---~~~~~i~~l~~~~~~~~~~~~~~----------------------------------  290 (420)
T d1vp4a_         250 LNTFSKVL--APGLRIGMVA---GSKEFIRKIVQAKQSADLCSPAI----------------------------------  290 (420)
T ss_dssp             EEESTTTT--CGGGCEEEEE---CCHHHHHHHHHHHHHHHSSCCHH----------------------------------
T ss_pred             Eecccccc--cccccccccc---ccchhhhhhhhhhhhccccCchh----------------------------------
Confidence            88999987  3999999998   899999999887663 3455555                                  


Q ss_pred             ccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeeccCCceeEEeecCCCCHHHHHHHh
Q psy13922        312 GQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFN----SIEGMSCNPVQGAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       312 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~  387 (509)
                      .|.++..++.     +   ..+.++++..++.++++++.+.+.|.    ++||+++.+|+||+|+|++++  .       
T Consensus       291 ~q~~~a~~l~-----~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~--~-------  353 (420)
T d1vp4a_         291 THRLAARYLE-----R---YDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--E-------  353 (420)
T ss_dssp             HHHHHHHHHH-----H---SCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--T-------
T ss_pred             hhhhhhhhcc-----c---ccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECC--C-------
Confidence            3433333332     1   11333355666666766666666555    467899999999999998875  1       


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCC
Q psy13922        388 AEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPG  467 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (509)
                        +. ++.. +.++|+++||.++||+.|+...                                              .+
T Consensus       354 --~~-d~~~-~~~~l~~~gV~v~PG~~F~~~~----------------------------------------------~~  383 (420)
T d1vp4a_         354 --GF-DTWE-MFEYAKRKKVFYVPGRVFKVYD----------------------------------------------EP  383 (420)
T ss_dssp             --TC-CTTT-THHHHHHHTEECEEGGGGCTTC----------------------------------------------CC
T ss_pred             --CC-CHHH-HHHHHHHCCeEEEechhhCCCC----------------------------------------------CC
Confidence              23 2333 3467788999999999998720                                              12


Q ss_pred             CCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        468 AGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       468 ~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                      .+        +|||||+ .++++|+++++||+++++++.++
T Consensus       384 ~~--------~iRls~~~~~~e~l~~a~~rL~~~l~~~~~~  416 (420)
T d1vp4a_         384 SP--------SMRLSFCLPPDEKIVEGIKRLREVVLEYGKE  416 (420)
T ss_dssp             CS--------EEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--------EEEEEeCcCCHHHHHHHHHHHHHHHHHhhHh
Confidence            22        9999998 68899999999999999998875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=6.5e-46  Score=385.93  Aligned_cols=345  Identities=18%  Similarity=0.335  Sum_probs=275.9

Q ss_pred             cccCCCCcchHHHHHHHHHHHhhhcCCC--CCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHh
Q psy13922         46 VGSYTDSPGIEIIRRHVAQYISRRDGQP--ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE  123 (509)
Q Consensus        46 ~~~Y~~~~g~~~lr~~va~~l~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~  123 (509)
                      ..+|+++.|.++||+++|+|+++++|..  +++++|++|+|+++++..++.+++++||    .|+++.|+|..+...+..
T Consensus        76 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~  151 (428)
T d1iaya_          76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD----AFLVPSPYYPAFNRDLRW  151 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTC----EEEEESSCCTTHHHHTTT
T ss_pred             hccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCC----EEEEccCCchHHHHHHHH
Confidence            3469999999999999999999998754  6788999999999999999999999999    999999999999887764


Q ss_pred             -cCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCC
Q psy13922        124 -FNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ  201 (509)
Q Consensus       124 -~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~  201 (509)
                       .|+++++++.+..++|.+|++.++..++...+. .++++++++|||||||.+++.+++++|+++|++||++||+||+|.
T Consensus       152 ~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~  231 (428)
T d1iaya_         152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA  231 (428)
T ss_dssp             TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTG
T ss_pred             hcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccc
Confidence             589999999998889999999998887664433 578899999999999999999999999999999999999999999


Q ss_pred             cccccCCCccccHHHHHHHhCCC-CCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhh
Q psy13922        202 DNVYAEGSKFYSFKKVLVEMGEP-YKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALV  280 (509)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (509)
                      ++.+++ .++.++.++....... ....++++++|+||.| |++|+|+||++.  .++.+.+.+..... +...+..   
T Consensus       232 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~--~~~~l~~~~~~~~~-~~~~~~~---  303 (428)
T d1iaya_         232 ATVFDT-PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSS-FGLVSTQ---  303 (428)
T ss_dssp             GGCCSS-SCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHT-TSCCCHH---
T ss_pred             ccccCc-ccccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccc--cccchhhhhhhhhc-ccccccc---
Confidence            999974 3677777765432211 1234689999999999 799999999973  56777777766554 3334443   


Q ss_pred             ccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13922        281 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEG  360 (509)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  360 (509)
                                                     .+.++.+.+..       .....+++++.++.++++++.+.+.|+.. |
T Consensus       304 -------------------------------~~~~~~a~l~~-------~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-g  344 (428)
T d1iaya_         304 -------------------------------TQYFLAAMLSD-------EKFVDNFLRESAMRLGKRHKHFTNGLEVV-G  344 (428)
T ss_dssp             -------------------------------HHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             -------------------------------cccchhhhhhh-------hccccccccccccccchhHHHHHHHHHhC-C
Confidence                                           22222222221       12223457888899999999999999876 9


Q ss_pred             CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHH
Q psy13922        361 MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAK  440 (509)
Q Consensus       361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~  440 (509)
                      +++.+|+||+|+|++++...      ......++.+++..+++++||.++||..|+.                       
T Consensus       345 i~~~~p~gg~f~w~~l~~~~------~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~-----------------------  395 (428)
T d1iaya_         345 IKCLKNNAGLFCWMDLRPLL------RESTFDSEMSLWRVIINDVKLNVSPGSSFEC-----------------------  395 (428)
T ss_dssp             CCBCCCSSSSEEEEECGGGC------SSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-----------------------
T ss_pred             CEEecCCcceEEEEECcccc------ccCCCCCHHHHHHHHHHhCCEEEEcchhcCC-----------------------
Confidence            99999999999998885110      0011123456678889999999999999987                       


Q ss_pred             HhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee-cChHHHHHHHHHHHHHHHH
Q psy13922        441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~  503 (509)
                                               .+.+        |||+||+ .++++|+++++||++++..
T Consensus       396 -------------------------~~~g--------~~Ris~a~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         396 -------------------------QEPG--------WFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             -------------------------SSSS--------EEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             -------------------------CCCC--------EEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence                                     3434        9999998 5777899999999999853

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=2.7e-45  Score=378.06  Aligned_cols=373  Identities=18%  Similarity=0.288  Sum_probs=289.7

Q ss_pred             hHHHHHHHHhhcCCCCC----CCCC---CCH-HHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCC
Q psy13922          5 FSLSLQVLALVSLPQLF----DDPR---FPD-DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW   76 (509)
Q Consensus         5 ~~~~~~~~~~~~~~~~~----~~~~---~p~-~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~   76 (509)
                      .|.||+++.+++.|.+|    |.|.   +|. .+.+++.++++.... ...+|+++.|.++||+++|+|+++++|.++++
T Consensus        16 ~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~   94 (403)
T d1wsta1          16 ASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHAD-KALQYGTTKGFTPLRLALARWMEKRYDIPMSK   94 (403)
T ss_dssp             CHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHH-HHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTT
T ss_pred             CcHHHHHHHHhCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcc-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCh
Confidence            37899999999999866    4443   464 455667777765332 34459999999999999999999999999999


Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc-
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK-  155 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~-  155 (509)
                      ++|++|+|+++++..++.+++++||    .|+++.|+|..+...+..+|.+++.++.++.+   .+...+......... 
T Consensus        95 ~~I~it~G~~~al~~~~~~l~~~gd----~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~---~~~~~~~~~~~~~~~~  167 (403)
T d1wsta1          95 VEIMTVAGSQQALDLIGRVFLNPGD----PIVVEAPTYLAAIQAFKYYDPEFISIPLDDKG---MRVDLLEEKLEELRKQ  167 (403)
T ss_dssp             CEEEEESSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE---ECHHHHHHHHHHHHHT
T ss_pred             HHeeecccchHHHHHHHHHHhhcCC----ccccCCCcchhhhHHHhhccccceeEeecccC---Cccccccccchhhhhc
Confidence            9999999999999999999999998    99999999999999999999999999988763   233333332222111 


Q ss_pred             -cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEE
Q psy13922        156 -HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFM  234 (509)
Q Consensus       156 -~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  234 (509)
                       .....++++++||||||.++|.+++++|+++|++||++||+||+|.++.+++. +..++....       ...++++++
T Consensus       168 ~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~-~~~~~~~~~-------~~~~~i~~~  239 (403)
T d1wsta1         168 GKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE-PTPPIKHFD-------DYGRVIYLG  239 (403)
T ss_dssp             TCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGGC-------SSSCEEEEE
T ss_pred             cccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC-CCCcccccC-------CCCcEEEEc
Confidence             12445566689999999999999999999999999999999999999998754 344433221       134699999


Q ss_pred             ecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccccc
Q psy13922        235 SCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ  313 (509)
Q Consensus       235 S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (509)
                      |+||.+ + +|+|+||++   +++++++.+..... ....++..                                  .+
T Consensus       240 S~SK~~-~-~G~RiG~~i---~~~~~i~~~~~~~~~~~~~~~~~----------------------------------~~  280 (403)
T d1wsta1         240 TFSKIL-A-PGFRIGWVA---AHPHLIRKMEIAKQSIDLCTNTF----------------------------------GQ  280 (403)
T ss_dssp             ESTTTT-C-GGGCCEEEE---ECHHHHHHHHHHHHHHHSSCCHH----------------------------------HH
T ss_pred             ccccee-c-Ccccccccc---cchHHHHHHHHHHhhhccccccc----------------------------------hh
Confidence            999999 5 999999999   79999998877655 34455555                                  33


Q ss_pred             chhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeeccCCceeEEeecCCCCHHHHHHHhhcCC
Q psy13922        314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI--EGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGK  391 (509)
Q Consensus       314 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  391 (509)
                      .+...+..     .   .....+++++++.++++++.+.+.|.+.  .++.+..|.||+|+|++++  .         ++
T Consensus       281 ~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~--~---------~~  341 (403)
T d1wsta1         281 AIAWKYVE-----N---GYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLP--E---------GI  341 (403)
T ss_dssp             HHHHHHHH-----T---THHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECC--T---------TC
T ss_pred             hhHHhhhh-----c---cccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECC--C---------CC
Confidence            33333322     1   2344457888999999999999999874  3678889999999998775  1         22


Q ss_pred             CCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCC
Q psy13922        392 CPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFG  471 (509)
Q Consensus       392 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (509)
                       +++. +.++|.++||.++||+.|+...                                              .+.+  
T Consensus       342 -~~~~-~~~~l~~~gV~v~pg~~f~~~~----------------------------------------------~~~~--  371 (403)
T d1wsta1         342 -DTKL-MMERAVAKGVAYVPGEAFFVHR----------------------------------------------DKKN--  371 (403)
T ss_dssp             -CTTT-THHHHHHTTEECEEGGGGSTTC----------------------------------------------CCCS--
T ss_pred             -CHHH-HHHHHHHCCEEEEechhhcCCC----------------------------------------------CCCC--
Confidence             2333 4566777899999999887621                                              1222  


Q ss_pred             CCCCceeEEEEee-cChHHHHHHHHHHHHHHHHHHhh
Q psy13922        472 QVPGTYHFRTTIL-PQPEKLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       472 ~~~~~~~~Rls~~-~~~~~i~~~~~~l~~~~~~~~~~  507 (509)
                            ++||+++ .++++|++++++|++++++..+|
T Consensus       372 ------~iRi~~~~~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         372 ------TMRLNFTYVPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             ------EEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------EEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                  9999998 78999999999999999988775

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.2e-45  Score=374.82  Aligned_cols=347  Identities=24%  Similarity=0.294  Sum_probs=276.6

Q ss_pred             CCCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         21 FDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        21 ~~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      +|.|+|  |+.+++++.++..     ..++|+++.|.++||+++++++.+++|+.+++++|++|+|+++++..++.++++
T Consensus        35 ~G~p~~~~p~~~~~al~~~~~-----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~  109 (389)
T d2gb3a1          35 IGQPDLKTPEVFFERIYENKP-----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN  109 (389)
T ss_dssp             SCCCCSCCCTHHHHHHHHTCC-----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCHHHHHHHHhcCC-----CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccccc
Confidence            488887  6677887765422     345699999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHH
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKE  178 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~  178 (509)
                      +|+    .|+++.|+|..+...++..|.+++.++.+.++. ..+.+.+...+.+     ++++++++|||||||.+++.+
T Consensus       110 ~gd----~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~l~nP~NPtG~~~s~~  179 (389)
T d2gb3a1         110 PGD----EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEG-FAIPQNLESFINE-----RTKGIVLSNPCNPTGVVYGKD  179 (389)
T ss_dssp             TTC----EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGT-SCCCTTGGGGCCT-----TEEEEEEESSCTTTCCCCCHH
T ss_pred             CCC----eEEEeCCCCccccccccccCccccccccccccc-cchhhhhhhhccc-----CccEEEeCCCCccccccchHH
Confidence            998    999999999999999999999999999876543 3344555444444     789999999999999999999


Q ss_pred             HHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCH
Q psy13922        179 NIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       179 ~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++++|+++|+++|++||+||+|.++.+++.  ..+.....        ..+++++.|+||.+ ++||+|+||++.  .++
T Consensus       180 ~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~--------~~~~~v~~s~sK~~-~~~GlRiG~~~~--~~~  246 (389)
T d2gb3a1         180 EMRYLVEIAERHGLFLIVDEVYSEIVFRGE--FASALSIE--------SDKVVVIDSVSKKF-SACGARVGCLIT--RNE  246 (389)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCGGGSC--------CTTEEEEEESTTTT-TCGGGCCEEEEC--SCH
T ss_pred             HHHHHHhhcccCCEEEEEeccccccccccc--cccccccc--------cccccccccccccc-cCcccceeeeec--cch
Confidence            999999999999999999999999998753  22222111        23478888999999 699999999972  455


Q ss_pred             HHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHH
Q psy13922        259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQ  338 (509)
Q Consensus       259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  338 (509)
                      .+...+........+++.+                                  .+.++..++..          ...+++
T Consensus       247 ~i~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~~----------~~~~~~  282 (389)
T d2gb3a1         247 ELISHAMKLAQGRLAPPLL----------------------------------EQIGSVGLLNL----------DDSFFD  282 (389)
T ss_dssp             HHHHHHHHHHHHSCCCCHH----------------------------------HHHHHHHHHTC----------CHHHHH
T ss_pred             hHHHHHhhhhhcccccccc----------------------------------ccccccccccc----------cchhcc
Confidence            6666665555555566665                                  44444434331          223478


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh-----cCeEEecCC
Q psy13922        339 SVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER-----TGICIVPGA  413 (509)
Q Consensus       339 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~-----~gI~v~pg~  413 (509)
                      .+++.++++++.+.+.|+++++..+..|++++|+|++++.             .++.+++..++++     +||.++||+
T Consensus       283 ~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~-------------~~~~~~~~~ll~e~~l~~~~v~v~pg~  349 (389)
T d2gb3a1         283 FVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPV-------------EDAEEFARWMLTDFNMDGETTMVAPLR  349 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSS-------------SCHHHHHHHHHHSCCBTTEEEECEEGG
T ss_pred             cccccccccchhhhhhhhhhccccccCCCceEEEEEeCCC-------------CCHHHHHHHHHHhhhhhhCCEEEEeCc
Confidence            8899999999999999999955667889999999988752             2466677777765     588999999


Q ss_pred             CCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEeecChHHHHHH
Q psy13922        414 GFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAM  493 (509)
Q Consensus       414 ~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~~~~~~i~~~  493 (509)
                      .|+..++                                             .+.+        |+||+++.++++++++
T Consensus       350 ~f~~~~~---------------------------------------------~~~~--------~iRis~~~~~~~l~~a  376 (389)
T d2gb3a1         350 GFYLTPG---------------------------------------------LGKK--------EIRIACVLEKDLLSRA  376 (389)
T ss_dssp             GGCSSTT---------------------------------------------TTSS--------EEEEECCSCHHHHHHH
T ss_pred             ccccCCC---------------------------------------------CCCC--------EEEEEEcCCHHHHHHH
Confidence            8876311                                             2223        9999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy13922        494 LEKFREFHEEFL  505 (509)
Q Consensus       494 ~~~l~~~~~~~~  505 (509)
                      +++|++++++|-
T Consensus       377 ~~~L~~~lk~f~  388 (389)
T d2gb3a1         377 IDVLMEGLKMFC  388 (389)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998873

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-44  Score=369.03  Aligned_cols=348  Identities=20%  Similarity=0.303  Sum_probs=282.8

Q ss_pred             HHHHHHHHhhcCCCCC----CCCCC--CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE
Q psy13922          6 SLSLQVLALVSLPQLF----DDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV   79 (509)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~--p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i   79 (509)
                      +.+..+..+++.++.|    |+|.+  |+.+++++++++.+     .++|+++.|.++||+++|++++      +++++|
T Consensus        13 ~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~-----~~~Y~~~~G~~elr~aiA~~~~------~~~~~I   81 (368)
T d1v2da_          13 SIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEFA------VEPESV   81 (368)
T ss_dssp             -CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHHHHHT------SCGGGE
T ss_pred             CHHHHHHHHhccCCCEEecCCCCCCCCCHHHHHHHHHHhhc-----ccCCCCCcCCHHHHHHHHhhcc------cCCcce
Confidence            3444555666666643    77876  57899999888765     3469999999999999999983      788999


Q ss_pred             EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC-CCCCCCCHHHHHHHHHhhhccCC
Q psy13922         80 ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE-SKQWGLPISELERSITEARKHCN  158 (509)
Q Consensus        80 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~L~~~i~~~~~~~~  158 (509)
                      ++|+|+++++..++..+++++|    .|+++.|+|..+...++..|.+++.++++. ..+|.+|++.+++.+++     .
T Consensus        82 iit~G~~~al~~~~~~l~~~~d----~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~  152 (368)
T d1v2da_          82 VVTSGATEALYVLLQSLVGPGD----EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP-----R  152 (368)
T ss_dssp             EEESSHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT-----T
T ss_pred             eeccchHHHHHHHhhccccccc----cccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhcc-----C
Confidence            9999999999999999999998    999999999999999999999999998753 24578999999999887     7


Q ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEeccc
Q psy13922        159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSK  238 (509)
Q Consensus       159 ~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  238 (509)
                      ++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.....  ........        ..+++++.|+||
T Consensus       153 ~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~sk  222 (368)
T d1v2da_         153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER--PRRLREFA--------PERTFTVGSAGK  222 (368)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--CCCHHHHC--------TTTEEEEEEHHH
T ss_pred             ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccc--cccccccc--------ccccceeecccc
Confidence            99999999999999999999999999999999999999999998776532  22222211        223777889999


Q ss_pred             ccCCCCCCeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhh
Q psy13922        239 GYMGECGLRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMD  317 (509)
Q Consensus       239 ~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  317 (509)
                      .+ |++|+|+||++   .++++++.+.+... ...+++.+                                  .|.++.
T Consensus       223 ~~-~~~G~R~g~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~  264 (368)
T d1v2da_         223 RL-EATGYRVGWIV---GPKEFMPRLAGMRQWTSFSAPTP----------------------------------LQAGVA  264 (368)
T ss_dssp             HT-TCGGGCCEEEE---CCTTTHHHHHHHHHHHTSSCCHH----------------------------------HHHHHH
T ss_pred             cc-ccccccccccc---ccccccchhhhhhhccccccccc----------------------------------cccccc
Confidence            99 79999999998   78999988887766 34556665                                  343333


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHH
Q psy13922        318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY  397 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  397 (509)
                      .++.        ...+.++++++++.++++++.+.+.|++. |+++..|++++|+|++++            +..     
T Consensus       265 ~~l~--------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~------------~~~-----  318 (368)
T d1v2da_         265 EALK--------LARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP------------GWD-----  318 (368)
T ss_dssp             HHHH--------HHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT------------TCC-----
T ss_pred             cccc--------cccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCC------------ccH-----
Confidence            3332        13344458889999999999999999998 999999999999998775            211     


Q ss_pred             HHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCce
Q psy13922        398 AFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTY  477 (509)
Q Consensus       398 ~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +.++++++||.++||+.|+...                                              ++.+        
T Consensus       319 ~~~ll~~~gI~v~pg~~F~~~~----------------------------------------------~~~~--------  344 (368)
T d1v2da_         319 AFRLVEEARVALIPASAFYLED----------------------------------------------PPKD--------  344 (368)
T ss_dssp             HHHHHHHTCEECEEGGGGCSSS----------------------------------------------CCTT--------
T ss_pred             HHHHHHhCCEEEEechhhCCCC----------------------------------------------CCCC--------
Confidence            3567889999999999887621                                              2333        


Q ss_pred             eEEEEeecChHHHHHHHHHHHHHH
Q psy13922        478 HFRTTILPQPEKLKAMLEKFREFH  501 (509)
Q Consensus       478 ~~Rls~~~~~~~i~~~~~~l~~~~  501 (509)
                      +||+|++.++++|++++++|++++
T Consensus       345 ~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         345 LFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999874

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=1.7e-41  Score=349.47  Aligned_cols=313  Identities=13%  Similarity=0.147  Sum_probs=240.7

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHH-----HHHHHHHHHhhcC
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS-----DGIKSVLKLLIED   99 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~-----~al~~~~~~l~~~   99 (509)
                      ..++.|+++..+.+.+   .....|+++.|.++||+++++++.++++..++++.|+.+.|+.     +++..+++.++++
T Consensus        46 ~~~~~V~~a~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~p  122 (401)
T d7aata_          46 YVLNCVRKAEAMIAAK---KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKF  122 (401)
T ss_dssp             CCCHHHHHHHHHHHHT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHhhC---CCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCC
Confidence            3457888888888776   3344599999999999999999998888777888887765433     5788888899999


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|++++|+|..|...++.+|++++.+|+.++++|.+|++.+.+.+....  ++++++++++||||||.+++.++
T Consensus       123 Gd----~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iii~~p~NPTG~~~s~e~  196 (401)
T d7aata_         123 SR----DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP--EKSIILLHACAHNPTGVDPRQEQ  196 (401)
T ss_dssp             CC----EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC--TTCEEEEESSSCTTTCCCCCHHH
T ss_pred             Cc----eEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC--CceEEEEecCCCCCccccCCHHH
Confidence            99    9999999999999999999999999999888788899999988876421  26889999999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++|+++||+||+|.++.+++............+.     ..+++++.|+||.+ +++|+|+||++   ++..
T Consensus       197 ~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~sk~~-~~~G~RiG~~~---~~~~  267 (401)
T d7aata_         197 WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ-----GIDVVLSQSYAKNM-GLYGERAGAFT---VICR  267 (401)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT-----TCCCEEEEECTTTS-CCGGGCEEEEE---EECS
T ss_pred             HHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhh-----hcccceeEeccccc-eeeccccceee---cchH
Confidence            999999999999999999999999987431111111112222     23478888999999 79999999998   4555


Q ss_pred             HHHHHHHhh--------hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCc-h
Q psy13922        260 VKAMLHKSI--------SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPS-Y  330 (509)
Q Consensus       260 ~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~  330 (509)
                      +++.+.+..        ..+.+++..                                  .|.+....+.     ++. .
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~l~-----~~~~~  308 (401)
T d7aata_         268 DAEEAKRVESQLKILIRPMYSNPPMN----------------------------------GARIASLILN-----TPELR  308 (401)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHSSCCHH----------------------------------HHHHHHHHHH-----CHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccchH----------------------------------HHHHHHHhcC-----CHHHH
Confidence            544443322        133455555                                  3333333333     111 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCe
Q psy13922        331 EQFSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGI  407 (509)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI  407 (509)
                      .++.++.+.+++.++++++.+.+.|++..   .+.++++++|||+|+.+                 +.+++.+|++++||
T Consensus       309 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-----------------s~e~~~~L~~e~gV  371 (401)
T d7aata_         309 KEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL-----------------KPEQVERLTKEFSI  371 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC-----------------CHHHHHHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCC-----------------CHHHHHHHHHhCCE
Confidence            34556688999999999999999999862   24567899999999543                 23457889999999


Q ss_pred             EEec
Q psy13922        408 CIVP  411 (509)
Q Consensus       408 ~v~p  411 (509)
                      ++.|
T Consensus       372 ~~~p  375 (401)
T d7aata_         372 YMTK  375 (401)
T ss_dssp             ECCT
T ss_pred             EECC
Confidence            9885

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=8.2e-39  Score=330.44  Aligned_cols=338  Identities=15%  Similarity=0.129  Sum_probs=238.3

Q ss_pred             HHHHHHHhhcCCCCC----C-------CCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCC
Q psy13922          7 LSLQVLALVSLPQLF----D-------DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD   75 (509)
Q Consensus         7 ~~~~~~~~~~~~~~~----~-------~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~   75 (509)
                      .+.+.++....|+.|    |       .|..++.|.++.+....+ . ...++|+|..|.++||+++++++.++++....
T Consensus        18 ~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~-~-~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~   95 (412)
T d1yaaa_          18 GIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND-S-SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQ   95 (412)
T ss_dssp             HHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTC-T-TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhC-c-ccCCCCCCCCCCHHHHHHHHHHHhcccCcccc
Confidence            455555555556543    3       233456777765444333 1 23345999999999999999999887765555


Q ss_pred             CCcEEE--eCCHHHHHHHHH--HHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHH
Q psy13922         76 WQDVIL--SAGASDGIKSVL--KLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSIT  151 (509)
Q Consensus        76 ~~~i~~--t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~  151 (509)
                      .+.++.  +.|+..++..++  ..+..+||    .|++++|+|..|...++.+|.+++.+|...+.++.++.+.++..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd----~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (412)
T d1yaaa_          96 EDRVISVQSLSGTGALHISAKFFSKFFPDK----LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQ  171 (412)
T ss_dssp             TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred             ccceeEEecccchhHHHHHHHHHhccCCCC----EEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccc
Confidence            554433  344454544443  34567888    9999999999999999999999999999877788889999988887


Q ss_pred             hhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHH-HHHHhCCCCCCcee
Q psy13922        152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK-VLVEMGEPYKSMEL  230 (509)
Q Consensus       152 ~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v  230 (509)
                      ...+  +++++++++||||||.+++++++++|+++|++++++||+||+|.+|.+++. ...+... .......  ...++
T Consensus       172 ~~~~--~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~  246 (412)
T d1yaaa_         172 KAPE--GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDL-DKDAYAVRLGVEKLS--TVSPV  246 (412)
T ss_dssp             HSCT--TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCH-HHHTHHHHHHHHHTT--TTCCE
T ss_pred             cCCC--ceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCc-ccchhhhhhhhhccc--cCCCe
Confidence            5321  567788899999999999999999999999999999999999999998743 2222111 1111111  13458


Q ss_pred             EEEEecccccCCCCCCeeEEEeeecCC----HHHHHHH----HH-hhhcccCcchhhhhccccccCCCCCchhHHHHHHH
Q psy13922        231 ASFMSCSKGYMGECGLRGGYSEVINLD----PGVKAML----HK-SISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQA  301 (509)
Q Consensus       231 i~i~S~SK~~~G~~Glr~G~v~~~~~~----~~~~~~l----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (509)
                      +++.|+||.+ |++|+|+||+++....    ....+.+    .. ....+.+++.+                        
T Consensus       247 i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  301 (412)
T d1yaaa_         247 FVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAY------------------------  301 (412)
T ss_dssp             EEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHH------------------------
T ss_pred             EEEEecCCcc-ccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChH------------------------
Confidence            9999999999 7999999999842111    1111211    11 12345677777                        


Q ss_pred             hhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CeeccCCceeEEeecCCC
Q psy13922        302 VLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI--EG-MSCNPVQGAMYAFPQMKL  378 (509)
Q Consensus       302 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~  378 (509)
                                +|.+...++.+    .....++.++++.+++.++++++.+.+.|+++  ++ +.++.+++|||+|+.+  
T Consensus       302 ----------~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l--  365 (412)
T d1yaaa_         302 ----------GAKIVAKLLET----PELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--  365 (412)
T ss_dssp             ----------HHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--
T ss_pred             ----------HHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCc--
Confidence                      44444333331    11134566778999999999999999999986  22 5667899999999544  


Q ss_pred             CHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       379 ~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                                     +.+++.++++++||++.|
T Consensus       366 ---------------s~e~~~~L~~e~~V~~~~  383 (412)
T d1yaaa_         366 ---------------TPQMVKRLEETHAVYLVA  383 (412)
T ss_dssp             ---------------CHHHHHHHHHHHCEECCT
T ss_pred             ---------------CHHHHHHHHHhCCEEECC
Confidence                           234578999999998874

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=4.5e-38  Score=318.28  Aligned_cols=293  Identities=20%  Similarity=0.229  Sum_probs=223.2

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      .|+.+++++.+.+..     .++|++. +..+||+++|++++      +++++|++|+|+++++..++..+.+  +    
T Consensus        36 ~p~~~~~a~~~~~~~-----~~~Yp~~-~~~~Lr~aia~~~~------v~~~~I~~~~g~~~~~~~~~~~~~~--~----   97 (355)
T d1lc5a_          36 MPVSVKRALIDNLDC-----IERYPDA-DYFHLHQALARHHQ------VPASWILAGNGETESIFTVASGLKP--R----   97 (355)
T ss_dssp             CCHHHHHHHHHTGGG-----GGSCCCT-TCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHCC--S----
T ss_pred             CCHHHHHHHHHHHHH-----hccCCCC-ChHHHHHHHHHHhC------CCHHHEEecccHHHHHHHHHhhhcc--c----
Confidence            478888888877655     4559655 45899999999983      6789999999999999888776643  3    


Q ss_pred             eEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy13922        106 GVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK  185 (509)
Q Consensus       106 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~  185 (509)
                      .+++..|.|..|.......+.+++.++++.+.+|.++ +.+++.+..     ++++|+++|||||||.+++++++++|++
T Consensus        98 ~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~-----~~~~v~l~nP~NPtG~~~~~e~l~~i~~  171 (355)
T d1lc5a_          98 RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTP-----DLDCLFLCTPNNPTGLLPERPLLQAIAD  171 (355)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             cccccCCccceeccccccccccceeeeeeccCCccce-eeeeecccc-----ccceeeeecccCcccccchhhhhhhhhh
Confidence            6777889999999999999999999999877777777 445555554     7999999999999999999999999999


Q ss_pred             HHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       186 ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +|+++++++|+||+|.+|.+.+.. ....   ..      ...++++++|+||.+ |++|+|+||++.  .++.+.+.+.
T Consensus       172 ~a~~~~~~li~De~y~~~~~~~~~-~~~~---~~------~~~~~i~~~S~SK~~-~l~GlR~G~~i~--~~~~~~~~~~  238 (355)
T d1lc5a_         172 RCKSLNINLILDEAFIDFIPHETG-FIPA---LK------DNPHIWVLRSLTKFY-AIPGLRLGYLVN--SDDAAMARMR  238 (355)
T ss_dssp             HHHHHTCEEEEECTTGGGSTTCCC-SGGG---CT------TCTTEEEEEESTTTT-TCTTTCCEEEEC--CCHHHHHHHH
T ss_pred             hccccccccccccceeeeeeeccc-cccc---cc------ccccceeeccccccc-ccccccccceec--cchhhhHHHH
Confidence            999999999999999998765431 1111   11      133599999999999 899999999972  3455666665


Q ss_pred             HhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHH
Q psy13922        266 KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLK  345 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (509)
                      +... ....+.+                                  ++.++..+++           ...++.+.++.++
T Consensus       239 ~~~~-~~~~~~~----------------------------------~~~~a~~~l~-----------~~~~~~~~~~~~~  272 (355)
T d1lc5a_         239 RQQM-PWSVNAL----------------------------------AALAGEVALQ-----------DSAWQQATWHWLR  272 (355)
T ss_dssp             HHSC-TTCSCHH----------------------------------HHHHHHHGGG-----------CHHHHHHHHHHHH
T ss_pred             hhcC-Ccccccc----------------------------------cccccccccc-----------ccchhHHHHHHHH
Confidence            5443 3455555                                  4444444443           1234677788899


Q ss_pred             HHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCC
Q psy13922        346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ  417 (509)
Q Consensus       346 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~  417 (509)
                      ++++.+.+.|.+++++.+.+ .+++|+|++++.              ++.++ .+.|.++||.++||..|+.
T Consensus       273 ~~~~~~~~~l~~~~~~~~~p-~~~~f~~~~~~~--------------~~~~~-~~~L~~~gv~vr~~~~f~~  328 (355)
T d1lc5a_         273 EEGARFYQALCQLPLLTVYP-GRANYLLLRCER--------------EDIDL-QRRLLTQRILIRSCANYPG  328 (355)
T ss_dssp             HHHHHHHHHHHTSTTEEECC-CSSSEEEEEESC--------------TTCCH-HHHHHTTTEECEECTTSTT
T ss_pred             HHHHHHHHHHhhcCCcEECC-CCCEEEEEECCC--------------CHHHH-HHHHHHCCcEEEeCccCCC
Confidence            99999999999997877654 567788877652              23333 4455677999999998876

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.6e-40  Score=337.57  Aligned_cols=317  Identities=15%  Similarity=0.138  Sum_probs=236.5

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHH----HHHHHHHhhcCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDG----IKSVLKLLIEDVD  101 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~a----l~~~~~~l~~~gd  101 (509)
                      .++.|.++.......  ......|+|..|.++||+++++++.++++..+++++|+++.|++++    +.+++..+..+||
T Consensus        45 ~~~~V~~A~~~l~~~--~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd  122 (397)
T d3tata_          45 QLQAVAEAEARLNAQ--PHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPES  122 (397)
T ss_dssp             CCHHHHHHHHHHTTS--CCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSC
T ss_pred             CcHHHHHHHHHHHhC--cccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCC
Confidence            456777776544333  2334559999999999999999999988888888999888776653    6666777788998


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|++++|+|..|...++.+|.+++.+|++.++++.+|.+.+.+.+....  .+++++++++||||||.++|.++++
T Consensus       123 ----~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~NPTG~~~s~~~~~  196 (397)
T d3tata_         123 ----GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLP--ARSIVLLHPCCHNPTGADLTNDQWD  196 (397)
T ss_dssp             ----CCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCC--SSCCCEECSSSCSSSCCCCCHHHHH
T ss_pred             ----cceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcc--cccEEEEecCCCCCCCeeCCHHHHH
Confidence                9999999999999999999999999999988888899888887766431  2577888899999999999999999


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|+++|++++++||+||+|.++.+++. ...+......+.     ..+++++.|+||.+ |++|+|+||++......+..
T Consensus       197 ~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~-----~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~  269 (397)
T d3tata_         197 AVIEILKARELIPFLDIAYQGFGAGME-EDAYAIRAIASA-----GLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAA  269 (397)
T ss_dssp             HHHHHHHHTTCCCEECBSCTTSSSCHH-HHHHHHHHHHTT-----TCCCEECBCCHHHH-TBTTTCCBCCEEECSSTTHH
T ss_pred             HHHHHHhhcCeeEEeehhhhhhccCCc-ccchhhhhhhhc-----CCceEEEecCcccc-cccCccccccccchhHHHHH
Confidence            999999999999999999999998643 222222222222     23489999999999 79999999998422222222


Q ss_pred             HHHHH----h-hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHH
Q psy13922        262 AMLHK----S-ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSRE  336 (509)
Q Consensus       262 ~~l~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  336 (509)
                      ..+..    . ...+.+++..                                  .|.++..++..    ...+..+.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~~~~----~~~~~~~~~~  311 (397)
T d3tata_         270 GRVLGQLKATVRRNYSSPPNF----------------------------------GAQVVAAVLND----EALKASWLAE  311 (397)
T ss_dssp             HHHHHHHHHHTTTTTSSCCSH----------------------------------HHHHHHHHHHS----HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccHH----------------------------------HHHHHHHhcCC----HHHHHHHHHH
Confidence            22221    1 1234455555                                  33333333221    1123556667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CC--CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecC
Q psy13922        337 KQSVLDSLKQRAKMVADTFNSI-EG--MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPG  412 (509)
Q Consensus       337 ~~~~~~~~~~~~~~l~~~L~~~-~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg  412 (509)
                      ++.+++.++++++.+.+.|... +.  +.+.++++|||+|+.+.                 .+++.++++++||++.||
T Consensus       312 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------------~e~~~~L~~e~~V~l~~g  373 (397)
T d3tata_         312 VEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------------AAQVDRLREEFGVYLIAS  373 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC-----------------HHHHHHHTTTTCEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC-----------------HHHHHHHHHhCCEEeCCC
Confidence            8888999999999999999875 22  56678999999996442                 234788999999999864

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.2e-39  Score=328.32  Aligned_cols=314  Identities=17%  Similarity=0.201  Sum_probs=235.2

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc--EEEeCCHHHHHHHHHHH--hhcC
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD--VILSAGASDGIKSVLKL--LIED   99 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~--i~~t~G~~~al~~~~~~--l~~~   99 (509)
                      |+.++.|+++..+++.+   ...++|+|..|.++||+++++++.++++....++.  +++|.|++.++.+++..  +..+
T Consensus        43 ~p~~~~V~~A~~~~~~~---~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  119 (396)
T d2q7wa1          43 TPVLTSVKKAEQYLLEN---ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTS  119 (396)
T ss_dssp             CCCCHHHHHHHHHHHHH---CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHhhC---CCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhccc
Confidence            34568899998888877   44556999999999999999999988776665654  34567776666555544  4678


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      ||    .|++++|+|..|...++.+|++++.++...+.++..+...+.+......  .+++++++++||||||.+++.++
T Consensus       120 gd----~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~P~NPTG~~~s~e~  193 (396)
T d2q7wa1         120 VK----RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ--AGDVVLFHGCCHNPTGIDPTLEQ  193 (396)
T ss_dssp             CC----EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC--TTCEEEEECSSCTTTCCCCCHHH
T ss_pred             ce----EEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhc--cCcEEEEecCCcCCcCeecCHHH
Confidence            88    9999999999999999999999999999877777777777776655421  26778888999999999999999


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +++|+++|++|+++||+||+|.++.+++. ...+......+..     .+++++.|+||.+ +++|+|+||++.   ++.
T Consensus       194 ~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~-----~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~  263 (396)
T d2q7wa1         194 WQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMH-----KELIVASSYSKNF-GLYNERVGACTL---VAA  263 (396)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHC-----SCEEEEEECTTTT-TCGGGCCEEEEE---ECS
T ss_pred             HHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhc-----ccccccccccccc-cccCCCcccccc---chh
Confidence            99999999999999999999999998743 2233333333332     2377788999999 799999999984   444


Q ss_pred             HHHHHHHh--------hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        260 VKAMLHKS--------ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       260 ~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      .++.+...        .+.+.+++..                                  +|.++..++..    ...+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~q~~~~~~~~~----~~~~~  305 (396)
T d2q7wa1         264 DSETVDRAFSQMKAAIRANYSNPPAH----------------------------------GASVVATILSN----DALRA  305 (396)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCHH----------------------------------HHHHHHHHHTS----HHHHH
T ss_pred             HHHHHHHhhhhhhhhhhccccCCCHH----------------------------------HHHHHHHHhcC----chhHH
Confidence            44433322        1234566666                                  44444444331    11124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeE
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGIC  408 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~  408 (509)
                      .+.++++.+++.++++++.+.+.|+++.   .+.++.+++|+|.|+.+.                 .+++.++++++||+
T Consensus       306 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-----------------~e~~~~L~~e~gV~  368 (396)
T d2q7wa1         306 IWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------------KEQVLRLREEFGVY  368 (396)
T ss_dssp             HHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC-----------------HHHHHHHHHhCCEE
Confidence            4666789999999999999999999972   155667889999995442                 23478999999999


Q ss_pred             Eec
Q psy13922        409 IVP  411 (509)
Q Consensus       409 v~p  411 (509)
                      ++|
T Consensus       369 ~~~  371 (396)
T d2q7wa1         369 AVA  371 (396)
T ss_dssp             CCT
T ss_pred             ECC
Confidence            874

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-38  Score=318.11  Aligned_cols=304  Identities=20%  Similarity=0.289  Sum_probs=240.4

Q ss_pred             CcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhc
Q psy13922         45 SVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF  124 (509)
Q Consensus        45 ~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~  124 (509)
                      .+++||++.+ .+||+++|+++    |  +++++|++|+|++++|..++++++++||   ..|+++.|+|..|...++..
T Consensus        49 ~l~rYPd~~~-~~Lr~~ia~~~----g--v~pe~I~it~Gs~eai~~~~~~~~~pgd---~~Vl~~~P~y~~~~~~~~~~  118 (354)
T d1fg7a_          49 TLNRYPECQP-KAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRAFCEPGK---DAILYCPPTYGMYSVSAETI  118 (354)
T ss_dssp             CTTSCCCSSC-HHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTT---CEEEECSSSCTHHHHHHHHH
T ss_pred             HHhcCCCCcH-HHHHHHHHHHh----C--CChHHeeeccCchHHHHHHHHHhhcccc---ccccccccccccchhhhhcc
Confidence            4567976655 89999999998    3  7899999999999999999999999987   24788999999999999999


Q ss_pred             CCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       125 g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      |.+++.++.++  +|.+|++.++..+.      ++++|++++||||||.++++++++.+...++ ++.++|+||+|.+|.
T Consensus       119 g~~v~~~~~~~--~~~~d~~~l~~~~~------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~  189 (354)
T d1fg7a_         119 GVECRTVPTLD--NWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFC  189 (354)
T ss_dssp             TCEEEECCCCT--TSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred             Cceeecccccc--ccccchhhhhhccc------ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhc
Confidence            99999988764  58999999987653      6999999999999999999999998888775 688888999998887


Q ss_pred             ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhcccc
Q psy13922        205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQ  284 (509)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  284 (509)
                      ....  .....   .      ...++++++||||.| |++|+|+||++   +++++++.+.+....+ ..+.+       
T Consensus       190 ~~~~--~~~~~---~------~~~~~iv~~S~SK~~-~laGlRiGy~i---~~~~~i~~l~~~~~~~-~~~~~-------  246 (354)
T d1fg7a_         190 PQAS--LAGWL---A------EYPHLAILRTLSKAF-ALAGLRCGFTL---ANEEVINLLMKVIAPY-PLSTP-------  246 (354)
T ss_dssp             GGGC--SGGGT---T------TCTTEEEEEESSSTT-CCGGGCCEEEE---ECHHHHHHHHHHSCSS-CSCHH-------
T ss_pred             cccc--cchhh---c------ccccceEEeCCcccc-CCCcccccccc---ccchhhhhhhhhcCcc-chhhH-------
Confidence            5432  11111   1      134588999999999 89999999998   8999999998876533 34444       


Q ss_pred             ccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec
Q psy13922        285 LFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN  364 (509)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  364 (509)
                                                 .+.++..++.         +....+....++.+.++++.+.+.+.+++++...
T Consensus       247 ---------------------------~~~~a~~~~~---------~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~  290 (354)
T d1fg7a_         247 ---------------------------VADIAAQALS---------PQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV  290 (354)
T ss_dssp             ---------------------------HHHHHHHHTS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE
T ss_pred             ---------------------------HHHHHHHHHh---------hhccccccccchhhhhHHHHHHHHHHhCCCccee
Confidence                                       2322222222         3333446666777888889999999999777666


Q ss_pred             cCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhc
Q psy13922        365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAE  444 (509)
Q Consensus       365 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  444 (509)
                      .|.+++|+|++++               ++..+ .+.|.++||.++++..|..  ..+|+|+++++++++++++++-+.+
T Consensus       291 ~p~~~~f~~~~~~---------------~~~~~-~~~L~~~gIlvr~~~~~~~--~~~~lRisigt~ee~~~~l~aLka~  352 (354)
T d1fg7a_         291 FDSETNYILARFK---------------ASSAV-FKSLWDQGIILRDQNKQPS--LSGCLRITVGTREESQRVIDALRAE  352 (354)
T ss_dssp             CCCSSSEEEEEET---------------THHHH-HHHHHHTTEECEECTTSTT--CTTEEEEECCCHHHHHHHHHHHHTC
T ss_pred             CCCCceEEEEeCC---------------CHHHH-HHHHHHCCcEEecCCCCCC--CCCEEEEEeCCHHHHHHHHHHHhhc
Confidence            6778889998775               23443 4556678999999998865  3579999999999999999988754

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=7.8e-38  Score=323.03  Aligned_cols=345  Identities=16%  Similarity=0.204  Sum_probs=249.0

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcE--EEeCCHHHHHHHHHHHh-----
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDV--ILSAGASDGIKSVLKLL-----   96 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l-----   96 (509)
                      |..++.|.++......+ . ...++|+|..|.++||+++++++.+.++..+..+++  +.|.|++.++..+...+     
T Consensus        47 ~~~~~~V~~a~~~~~~~-~-~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (412)
T d1ajsa_          47 PWVLPVVRKVEQRIANN-S-SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYN  124 (412)
T ss_dssp             CCCCHHHHHHHHHHHTC-T-TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSS
T ss_pred             CCCcHHHHHHHHHHHhC-C-CcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhh
Confidence            44556777776655544 1 223459999999999999999998887766666654  45666666665555444     


Q ss_pred             --hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEec-CCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         97 --IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL-DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        97 --~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                        .++||    .|++++|+|..|...++.+|++.+.++. .++.++..|++.+++.+....  .+++++++++||||||.
T Consensus       125 ~~~~pGd----~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~il~~~P~NPTG~  198 (412)
T d1ajsa_         125 GTNNKDT----PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP--EFSIFVLHACAHNPTGT  198 (412)
T ss_dssp             SSSCCCS----CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC--TTCEEEEESSSCTTTCC
T ss_pred             hcCCCCC----EEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhcc--CCcEEEEecCCCCCcCC
Confidence              57888    9999999999999999999998776654 444566788888887776532  26788888999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHH-HHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFK-KVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      +++++++++|+++|++||++||+||+|.++.+++.. ..+.. ....+.     ...++++.|+||.+ +++|+|+||++
T Consensus       199 v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~~-----~~~~~~~~s~sk~~-~~~G~R~G~~~  271 (412)
T d1ajsa_         199 DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLE-KDAWAIRYFVSE-----GFELFCAQSFSKNF-GLYNERVGNLT  271 (412)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHH-HHTHHHHHHHHT-----TCCEEEEEECTTTS-CCGGGCEEEEE
T ss_pred             CCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcc-cchhhhhhhhhh-----cccccccccccccc-cCCCCCccccc
Confidence            999999999999999999999999999999987521 11211 112222     23378888999999 79999999998


Q ss_pred             eecCCHHHHHHHHH----h-hhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCC
Q psy13922        253 VINLDPGVKAMLHK----S-ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGE  327 (509)
Q Consensus       253 ~~~~~~~~~~~l~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  327 (509)
                      .......-...+..    . .+.+.+++..                                  +|.++..++..    .
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~----~  313 (412)
T d1ajsa_         272 VVAKEPDSILRVLSQMQKIVRVTWSNPPAQ----------------------------------GARIVARTLSD----P  313 (412)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHTTTSSCCSH----------------------------------HHHHHHHHHHS----H
T ss_pred             cchhHHHHHHHHHHHHHHHhhccccccchH----------------------------------HHHHHHHHhcC----H
Confidence            42222222222221    1 1234556665                                  34443333321    1


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C-CeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        328 PSYEQFSREKQSVLDSLKQRAKMVADTFNSIE--G-MSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                      ..+..+.++++.+++.++++++.+.+.|+++.  + +.++.+++|||+|+.+                 +.+++.+++++
T Consensus       314 ~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l-----------------s~~~v~~L~~e  376 (412)
T d1ajsa_         314 ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL-----------------NPKQVEYLINQ  376 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC-----------------CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC-----------------CHHHHHHHHHh
Confidence            11345666788999999999999999999862  1 4566889999999543                 23447889999


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      +||+++|                                                       |           .||+++
T Consensus       377 ~gV~~vp-------------------------------------------------------g-----------~Ri~~a  390 (412)
T d1ajsa_         377 KHIYLLP-------------------------------------------------------S-----------GRINMC  390 (412)
T ss_dssp             TCEECCT-------------------------------------------------------T-----------SEEEGG
T ss_pred             CCEEEeC-------------------------------------------------------C-----------CeEEec
Confidence            9999875                                                       3           278887


Q ss_pred             -cChHHHHHHHHHHHHHHHHH
Q psy13922        485 -PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       485 -~~~~~i~~~~~~l~~~~~~~  504 (509)
                       .+++.|+.+.++|.+++++.
T Consensus       391 g~~~~~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         391 GLTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             GCCTTTHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHHHhc
Confidence             78899999999999988753

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=4.2e-37  Score=315.51  Aligned_cols=316  Identities=14%  Similarity=0.141  Sum_probs=232.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCH-HHHHHHHHHHhhcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGA-SDGIKSVLKLLIEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~-~~al~~~~~~l~~~g  100 (509)
                      |.|..++.|.+++.+.+.+   ....+|+|..|.++||+++++++.+..+.....+.+++++|+ ..++.+.+..+.++|
T Consensus        41 g~~~~~~~V~~A~~~~~~~---~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  117 (394)
T d2ay1a_          41 GHTPIMRAVHAAEQRMLET---ETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPD  117 (394)
T ss_dssp             SCCCCCHHHHHHHHHHHHH---CCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCHHHHHHHHHHhhC---CCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCc
Confidence            3455678999999888877   334469999999999999999998876655445555555443 455667777778888


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|++++|+|..|...++.+|.+++.++...+.++..+.+.+++......+  +++++++++||||||.+++++++
T Consensus       118 d----~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~p~NPTG~~~s~e~~  191 (394)
T d2ay1a_         118 L----RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK--GDMVLLHGCCHNPTGANLTLDQW  191 (394)
T ss_dssp             C----CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT--TCEEEEESSSCTTTCCCCCHHHH
T ss_pred             e----EEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhccc--CcEEEEeCCCCCCCCCCCCHHHH
Confidence            8    99999999999999999999999999988776677787877776665321  46677778999999999999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|+++|++++++||+||+|.++.+++. ...+........     ..+++++.|+||.+ +++|+|+||+++   ....
T Consensus       192 ~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~-----~~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~~  261 (394)
T d2ay1a_         192 AEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASR-----IPEVLIAASCSKNF-GIYRERTGCLLA---LCAD  261 (394)
T ss_dssp             HHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHH-----CSSEEEEEECTTTT-TCGGGCEEEEEE---ECSS
T ss_pred             HHHHHHhhcceEEEEEeccchhhccccc-ccchhhhhhhhh-----cccccccccccccc-cCCcccccchhh---chhH
Confidence            9999999999999999999999998753 222333322222     23378888999999 699999999984   4433


Q ss_pred             HHHHHHhh--------hcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHH
Q psy13922        261 KAMLHKSI--------SAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQ  332 (509)
Q Consensus       261 ~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  332 (509)
                      ++...+..        ..+.+++..                                  .+.+....+..    ......
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~----~~l~~~  303 (394)
T d2ay1a_         262 AATRELAQGAMAFLNRQTYSFPPFH----------------------------------GAKIVSTVLTT----PELRAD  303 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCCH----------------------------------HHHHHHHHHHS----HHHHHH
T ss_pred             HHHHHHhhhhhHhhhcccccchhHH----------------------------------HHHHHHHhcCC----HHHHHH
Confidence            33332221        123344444                                  23222222220    111244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEE
Q psy13922        333 FSREKQSVLDSLKQRAKMVADTFNSIE---GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICI  409 (509)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v  409 (509)
                      +.++++.+++.++++++.+.+.|+++.   .+.++.+++|||+|+.+.                 .+++.++++++||++
T Consensus       304 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------------~~~~~~L~~~~~V~~  366 (394)
T d2ay1a_         304 WMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT-----------------PEQVKRIKEEFGIYM  366 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC-----------------HHHHHHHHHhCCEEe
Confidence            566788899999999999999998852   256778999999996442                 344789999999999


Q ss_pred             ec
Q psy13922        410 VP  411 (509)
Q Consensus       410 ~p  411 (509)
                      .|
T Consensus       367 ~~  368 (394)
T d2ay1a_         367 VG  368 (394)
T ss_dssp             CT
T ss_pred             cC
Confidence            85

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-36  Score=302.37  Aligned_cols=281  Identities=16%  Similarity=0.209  Sum_probs=213.9

Q ss_pred             CCCC--CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPR--FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~--~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |.++  +|+.+++++.+.+..   +.++ |.|..|.++||+++|++++.+ +  +++++|++|+|++++|.++++    +
T Consensus        27 ~enp~~~p~~i~~~~~~~~~~---~~~~-~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~it~G~~~~l~~l~~----~   95 (334)
T d2f8ja1          27 NENPFPFPEDLVDEVFRRLNS---DALR-IYYDSPDEELIEKILSYLDTD-F--LSKNNVSVGNGADEIIYVMML----M   95 (334)
T ss_dssp             CCCSSCCCHHHHHHHHHHCCT---TGGG-SCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEEEEHHHHHHHHHHH----H
T ss_pred             CCCCCCCCHHHHHHHHHHhhc---chhc-CCCCCCcHHHHHHHHHHhccc-C--CCcceEEecCcchhHHHHHhh----h
Confidence            5444  477999998888877   5566 446779999999999999654 3  688999999999999987655    4


Q ss_pred             CCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        100 VDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                      +|    +|+++.|+|..|...++.+|++++.+|.+++..+  + +    ...     .++++++++|||||||.++++++
T Consensus        96 ~d----~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~--~-~----~~~-----~~~~~l~l~nP~NPtG~~~s~~~  159 (334)
T d2f8ja1          96 FD----RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI--P-E----VNV-----GEGDVVFIPNPNNPTGHVFEREE  159 (334)
T ss_dssp             SS----EEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCC--C-C----CCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred             cc----ccccccccccccccchhccCCccccccccccccc--c-c----ccc-----ccceEEEecccccccceeecHHH
Confidence            57    9999999999999999999999999999876422  1 1    111     26899999999999999999877


Q ss_pred             HHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHH
Q psy13922        180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPG  259 (509)
Q Consensus       180 l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~  259 (509)
                      +.++    .++++++|+||+|.++.....  ....    .      ...++++++|+||.+ |++|+|+||++   ++++
T Consensus       160 l~~~----~~~~~~ii~Dd~~~~~~~~~~--~~~~----~------~~~~~i~~~S~SK~~-~~~G~R~G~~~---~~~~  219 (334)
T d2f8ja1         160 IERI----LKTGAFVALDEAYYEFHGESY--VDFL----K------KYENLAVIRTFSKAF-SLAAQRVGYVV---ASEK  219 (334)
T ss_dssp             HHHH----HTTTCEEEEECTTGGGTCCCC--GGGG----G------TCSSEEEEEESTTTS-SCTTTCEEEEE---ECHH
T ss_pred             hhcc----ccceeEEeecccchhhccccc--cccc----c------cCceEEEEecCcccc-chhhhhhhhcc---cchH
Confidence            7653    468999999999987654321  1111    1      123599999999999 79999999998   7999


Q ss_pred             HHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       260 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +++++...+. ..+.+..                                  .+.++...+.           ..++.++
T Consensus       220 ~i~~l~~~~~-~~~~s~~----------------------------------~~~~a~~~l~-----------~~~~~~~  253 (334)
T d2f8ja1         220 FIDAYNRVRL-PFNVSYV----------------------------------SQMFAKVALD-----------HREIFEE  253 (334)
T ss_dssp             HHHHHHHHSC-TTCSCHH----------------------------------HHHHHHHHHH-----------THHHHHH
T ss_pred             HHHHHHHhhc-ccccchh----------------------------------hhhhcccccc-----------cccchhh
Confidence            9999988765 3455665                                  3433333322           3345788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      .++.++++++.+.+.|+++ |+++.+++|+ |+|+.++.+             +.+. +.+.|.++||.+++
T Consensus       254 ~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~~~-------------~~~~-~~~~L~~~GI~vr~  309 (334)
T d2f8ja1         254 RTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFMEKE-------------EKER-LLEHLRTKNVAVRS  309 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECCHH-------------HHHH-HHHHHHHTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECCCC-------------CHHH-HHHHHHHCCCEECC
Confidence            8899999999999999999 8999888877 567666521             2334 34556678999874

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=8.9e-34  Score=291.75  Aligned_cols=331  Identities=14%  Similarity=0.161  Sum_probs=231.0

Q ss_pred             CCCCCCHH--HHHHHHHHHhcccCCCcccCCCCcc----hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH
Q psy13922         22 DDPRFPDD--VKQRAQAVLDGCRGQSVGSYTDSPG----IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL   95 (509)
Q Consensus        22 ~~~~~p~~--v~~a~~~~l~~~~~~~~~~Y~~~~g----~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~   95 (509)
                      |+|.|.+.  ...+...++.-..++.++ |....+    .++|+++|++++....+...+..+|++++|++|+|+.++.+
T Consensus        64 gdp~~~~~~w~~~~~~~~~~~~~~~~~s-y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~A  142 (425)
T d2hoxa1          64 GDGLFLEEYWKQHKEASAVLVSPWHRMS-YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVIS  142 (425)
T ss_dssp             CCCGGGHHHHTTSHHHHCEEECTTTTCS-SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhCcccceEEeecccccc-eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHH
Confidence            78888554  333344444333444443 544322    27999999998865544444555799999999999999999


Q ss_pred             hh--------cCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922         96 LI--------EDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus        96 l~--------~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      |.        .+|+    +|+++.|+|..|....+..+.+...+        .+|.+.+++.++.     +++++++++|
T Consensus       143 L~~~~~~~~~~pg~----~Vv~~~P~y~~Y~~~~~~~~~~~~~~--------~~D~~~~~~~~~~-----~~~ii~l~sP  205 (425)
T d2hoxa1         143 LSPNMTATPDAPES----KVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSNP-----EQYIEMVTSP  205 (425)
T ss_dssp             HSCCTTTCTTSCCE----EEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSCG-----GGEEEEEESS
T ss_pred             hccccccccCCCCC----EEEEecCccccHHHHHHHcCCCCCcc--------CCCHHHHHhhCCC-----CceEEEEECC
Confidence            94        4666    99999999999999998888765544        4466666666655     7999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      |||||.+..          +...++.+|+||+|.+..+.+      +.    .     ...++|+++||||.| |++|+|
T Consensus       206 nNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~------~~----~-----~~~~~Ivl~S~SK~f-glaGlR  259 (425)
T d2hoxa1         206 NNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP------IK----Y-----KADEDILLFTMSKFT-GHSGSR  259 (425)
T ss_dssp             CTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC------CC----S-----CBCCSEEEEEHHHHT-SCGGGC
T ss_pred             CCCCcchhh----------hhhhCCEEEEeccccCccccc------hh----h-----hcCCeEEEEeCHHhc-cCcchh
Confidence            999998732          223589999999997644432      11    1     123488999999999 899999


Q ss_pred             eEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCC
Q psy13922        248 GGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPG  326 (509)
Q Consensus       248 ~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  326 (509)
                      +||+++  .++.+++++.+... ...+++.+++.+..                 ++|....      .......      
T Consensus       260 iGw~i~--~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~-----------------~aL~~~~------~~~~~~~------  308 (425)
T d2hoxa1         260 FGWALI--KDESVYNNLLNYMTKNTEGTPRETQLRSL-----------------KVLKEVV------AMVKTQK------  308 (425)
T ss_dssp             CEEEEE--CCHHHHHHHHHHHHHHTSSCCHHHHHHHH-----------------HHHHHHH------HHHHHHT------
T ss_pred             eeeEEe--CCHHHHHHHHHhhccCcccCCHHHHHHHH-----------------HHhhccH------HHHHHHH------
Confidence            999864  78899998888766 45677777333321                 2221110      0000000      


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec--------------cCCceeEEeecCCCCHHHHHHHhhcCCC
Q psy13922        327 EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN--------------PVQGAMYAFPQMKLPAKAIAKAKAEGKC  392 (509)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~~~g~~  392 (509)
                          ....+..+..++.++++++.+.+.|.+.+.+.+.              .+..+.|+|+++..              
T Consensus       309 ----~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~--------------  370 (425)
T d2hoxa1         309 ----GTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------------  370 (425)
T ss_dssp             ----TSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCC--------------
Confidence                0111236777888999999999999887433221              23344567766642              


Q ss_pred             CcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCC
Q psy13922        393 PSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQ  472 (509)
Q Consensus       393 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (509)
                      ++.+++.++|+++||.++||..|+..                                               +  +   
T Consensus       371 ~~~~~~~~lL~e~gI~v~pGs~FG~~-----------------------------------------------~--~---  398 (425)
T d2hoxa1         371 EEDKDCYQTFQNGRINTQNGVGFEAS-----------------------------------------------S--R---  398 (425)
T ss_dssp             GGGCSHHHHHHHTTEECEEGGGGTSC-----------------------------------------------T--T---
T ss_pred             ChHHHHHHHHHhCCEEEEechhcCCC-----------------------------------------------C--C---
Confidence            12223678899999999999999751                                               2  3   


Q ss_pred             CCCceeEEEEeecChHHHHHHHHHHHHHHH
Q psy13922        473 VPGTYHFRTTILPQPEKLKAMLEKFREFHE  502 (509)
Q Consensus       473 ~~~~~~~Rls~~~~~~~i~~~~~~l~~~~~  502 (509)
                           |+|||++.+++.|+++++||+++++
T Consensus       399 -----yvRisl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         399 -----YVRLSLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             -----EEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             -----EEEEEecCCHHHHHHHHHHHHHHHh
Confidence                 9999999999999999999999985

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=1e-24  Score=219.38  Aligned_cols=175  Identities=13%  Similarity=0.131  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE  135 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~  135 (509)
                      ..+++.+|+++    |    .+++++|+|+++|+..++.+++++||    .|+++.++|.+....++..|++++.+|.++
T Consensus        50 ~~~~~~~A~~~----g----~e~~~~t~g~t~a~~~~~~al~~~gd----~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~  117 (364)
T d2e7ja1          50 DFIHNQLPKFL----G----CDVARVTNGAREAKFAVMHSLAKKDA----WVVMDENCHYSSYVAAERAGLNIALVPKTD  117 (364)
T ss_dssp             HHHHTHHHHHT----T----SSEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTTCEEEEECCCC
T ss_pred             HHHHHHHHHHh----C----cCEEEEECcHHHHHHHHHHHHhCCCc----EEEeecccccccchHHHhccceEEEeeecc
Confidence            44677788877    3    47899999999999999999999998    999999999999999999999999999987


Q ss_pred             CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHH
Q psy13922        136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFK  215 (509)
Q Consensus       136 ~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~  215 (509)
                      ..++.+|++.+++.+++..+..++++|++++|+||||.+.+   +++|+++|++||+++++|++|+....     ..++.
T Consensus       118 ~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~-----~~~~~  189 (364)
T d2e7ja1         118 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLK  189 (364)
T ss_dssp             TTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHH
T ss_pred             ccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh-----hhccc
Confidence            77789999999999987654446778889999999999987   88999999999999999999975332     23333


Q ss_pred             HHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        216 KVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       216 ~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      ++.         . .+++.|++|.+ |.+| ++||++   .++++++.+.
T Consensus       190 ~~g---------~-D~~~~S~~K~~-~~~g-~~g~l~---~~~~~~~~~~  224 (364)
T d2e7ja1         190 EIG---------A-DFIVGSGHKSM-AASG-PIGVMG---MKEEWAEIVL  224 (364)
T ss_dssp             HHT---------C-SEEEEEHHHHS-SCCS-SCEEEE---ECTTTTTTTT
T ss_pred             ccc---------c-ceeeecccccc-CCCC-CEEEEE---ECHHHHHHHH
Confidence            331         1 24466999999 6666 789998   5777666553

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=1.8e-25  Score=226.20  Aligned_cols=220  Identities=16%  Similarity=0.087  Sum_probs=158.7

Q ss_pred             hHHHHHHHHhhcCC------CCCCCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCc
Q psy13922          5 FSLSLQVLALVSLP------QLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD   78 (509)
Q Consensus         5 ~~~~~~~~~~~~~~------~~~~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~   78 (509)
                      ...+|++++.....      +.-+++.+++...+.+    ..     .  +++..+.+++++..++.+..     ...++
T Consensus         7 ~~~~~~~i~~~g~~~i~~~~gl~~~~~~~~~~~~~~----~~-----~--~~~~~~~~~l~~~~~~~~~~-----~~~e~   70 (366)
T d2aeua1           7 RKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALL----NT-----Y--IGSSYFAEKVNEYGLKHLGG-----DENDK   70 (366)
T ss_dssp             HHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHH----TS-----T--THHHHHHHHHHHHHHHHHTC-----CTTEE
T ss_pred             HHHHHHHhchhccchHhhhccCCCCCCccHHHHHHH----HH-----h--cCchhhHHHHHHHHHHHccC-----CCccE
Confidence            34577777755422      2235555565555544    22     1  33445668888888888742     24578


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEc-CCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccC
Q psy13922         79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIP-IPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHC  157 (509)
Q Consensus        79 i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~-~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~  157 (509)
                      +++|+|+++|+..++.++...++    .|+++ .|+|..+...++..|++++..  +       |+++|++.+++     
T Consensus        71 ~~~~~~~~~a~~~~l~al~~~~~----vi~~~~~~~~~~~~~~~~l~g~~~v~~--~-------d~e~l~~~i~~-----  132 (366)
T d2aeua1          71 CVGFNRTSSAILATILALKPKKV----IHYLPELPGHPSIERSCKIVNAKYFES--D-------KVGEILNKIDK-----  132 (366)
T ss_dssp             EEEESSHHHHHHHHHHHHCCSEE----EEECSSSSCCTHHHHHHHHTTCEEEEE--S-------CHHHHHTTCCT-----
T ss_pred             EEEeCCHHHHHHHHHHHhCCCCE----EEEecCCCcchhHHHHHHhcCCeEECC--C-------CHHHHHHhcCC-----
Confidence            99999999999999998764443    34444 589999999999999986532  2       78999998887     


Q ss_pred             CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecc
Q psy13922        158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCS  237 (509)
Q Consensus       158 ~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  237 (509)
                      ++++|++++|+||+  .++.+++++|+++|+++|+++|+||+|+...+..... ......    +.      .++++|+|
T Consensus       133 ~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~-~~~~~~----~~------di~~~S~s  199 (366)
T d2aeua1         133 DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-PPALKL----GA------DLVVTSTD  199 (366)
T ss_dssp             TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-CCHHHH----TC------SEEEEETT
T ss_pred             CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccC-CCHhhc----Cc------eEEEeccc
Confidence            89999999999985  4677899999999999999999999998876653322 222221    11      35577999


Q ss_pred             cccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcc-cCcchh
Q psy13922        238 KGYMGECGLRGGYSEVINLDPGVKAMLHKSISAM-LCPTVL  277 (509)
Q Consensus       238 K~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~-~~~~~~  277 (509)
                      |.+   +|+|+||++   +++++++.++...... .+.+.+
T Consensus       200 K~~---~g~~~G~i~---~~~~~i~~~~~~~~~~g~~~~~~  234 (366)
T d2aeua1         200 KLM---EGPRGGLLA---GKKELVDKIYIEGTKFGLEAQPP  234 (366)
T ss_dssp             SSS---SSCSCEEEE---EEHHHHHHHHHHHHTTTCBCCHH
T ss_pred             ccc---cccceeEEE---ecHHHHHHHHHHHhcccccCCHH
Confidence            976   589999998   8999999998876632 334443

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.7e-23  Score=213.12  Aligned_cols=188  Identities=14%  Similarity=0.210  Sum_probs=143.6

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCCC------------cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHH
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDS------------PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIK   90 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~------------~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~   90 (509)
                      ...+|+.|++++.+.++...     .|+.+            .-+.++|+.+|++++      +++++|++|+|+|++++
T Consensus        11 ~~p~~~~v~ea~~~~~~~~~-----~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg------~~~~~I~~~~~~t~~l~   79 (391)
T d1p3wa_          11 TTPVDPRVAEKMMQFMTMDG-----TFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVFTSGATESDN   79 (391)
T ss_dssp             CCCCCHHHHHHHHTTTSTTS-----CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESSHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHhcc-----ccCCCchhhhHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEEECCHHHHHH
Confidence            45568999999998887521     12211            123467888888883      67889999999999999


Q ss_pred             HHHHHhh----cCCCCCCCeEEEcCCCChhHHHHH---HhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEE
Q psy13922         91 SVLKLLI----EDVDGKKPGVLIPIPQYPLYSASL---AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV  163 (509)
Q Consensus        91 ~~~~~l~----~~gd~~~~~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~iv  163 (509)
                      .++.++.    ++||    .|++..+.|.++...+   +..|+++..+|.++.  +.+|++.+++++++     ++++|+
T Consensus        80 ~~~~~~~~~~~~~gd----~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~~~~~i~~-----~T~lv~  148 (391)
T d1p3wa_          80 LAIKGAANFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN--GIIDLKELEAAMRD-----DTILVS  148 (391)
T ss_dssp             HHHHHHHHHHGGGCC----EEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHCCT-----TEEEEE
T ss_pred             HHHhhhhhhhcCCCC----EEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC--CeEcHHHHHHhCCC-----CcEEEE
Confidence            9998764    6787    9999999999876554   456999999998754  37899999999987     899999


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        164 IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       164 i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      +++++||||.+++   +++|+++|+++|+++++|.+|......     ..+...         ..+++ +.|.+|.+ |.
T Consensus       149 is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~-----~d~~~~---------~~D~~-~~s~~k~~-g~  209 (391)
T d1p3wa_         149 IMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-----IDLSQL---------KVDLM-SFSGHKIY-GP  209 (391)
T ss_dssp             CCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBC-----CCTTTS---------CCSEE-EEESTTTT-SC
T ss_pred             EECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCcc-----ccchhc---------ccccc-cccccccc-CC
Confidence            9999999999999   788999999999999999999764321     111111         12244 55889999 77


Q ss_pred             CCCeeEEE
Q psy13922        244 CGLRGGYS  251 (509)
Q Consensus       244 ~Glr~G~v  251 (509)
                      +|..+.|+
T Consensus       210 ~g~g~~~~  217 (391)
T d1p3wa_         210 KGIGALYV  217 (391)
T ss_dssp             SSCEEEEE
T ss_pred             CceEEEEE
Confidence            77644444

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.90  E-value=8.9e-24  Score=214.34  Aligned_cols=344  Identities=15%  Similarity=0.161  Sum_probs=207.6

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcc----hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcC
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPG----IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IED   99 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g----~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~   99 (509)
                      ..|..|++++.+.++.........|.....    ..++|+.+|+++    |  +++++|++|+|+|+++++++.++ .++
T Consensus        18 ~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~i~~~~g~t~a~~~~~~~l~~~~   91 (381)
T d1elua_          18 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTGCDIVLWGLDWHQ   91 (381)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHHHHHHHHHSCCCT
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh----C--CCcccEEEECChHHHhhhcchhhhhcC
Confidence            357889999988887521111111222112    345677777777    3  57889999999999999999998 467


Q ss_pred             CCCCCCeEEEcCCCChhHHH----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922        100 VDGKKPGVLIPIPQYPLYSA----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      |+    .|+++.+.|.+...    ..+..|+++..+|.+.......+.+.+++.+++     +++++++++++||||..+
T Consensus        92 g~----~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~-----~t~~v~i~~~~n~tG~~~  162 (381)
T d1elua_          92 GD----EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-----KTRLVILSHLLWNTGQVL  162 (381)
T ss_dssp             TC----EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-----TEEEEEEESBCTTTCCBC
T ss_pred             Cc----eEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc-----cccccccccccccccccc
Confidence            77    99999999986544    445579999999877553323335556555555     799999999999999999


Q ss_pred             CHHHHHHHHHHHHH----CCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        176 TKENIQDIIKFAHR----EKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       176 s~~~l~~l~~ia~~----~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      +   +++|.++|++    +++++++|.+++....     +..+..    .     +.+++ +.|++|.+.|..  ++|++
T Consensus       163 ~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~-----~~~~~~----~-----~~D~~-~~s~~K~~~~p~--G~g~l  222 (381)
T d1elua_         163 P---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFSR----L-----EVDYY-AFTGHKWFAGPA--GVGGL  222 (381)
T ss_dssp             C---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTTT----S-----CCSEE-EEESSSTTCCCT--TCEEE
T ss_pred             h---hhHHHHHHhhcccccccccccccccccccc-----cccccc----c-----ccccc-cccccccccccc--hhhHH
Confidence            9   6677778877    4699999999876332     111111    1     12244 559999994333  45666


Q ss_pred             eeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      .   .+++..+.+......+........          ..... .......+..++.......++..+++        +.
T Consensus       223 ~---~~~~~~~~~~p~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~gt~~~~~~~~~~~a~~--------~~  280 (381)
T d1elua_         223 Y---IHGDCLGEINPTYVGWRSITYGAK----------GEPTG-WAEGGKRFEVATSAYPQYAGLLAALQ--------LH  280 (381)
T ss_dssp             E---ECTTTGGGCCCCSCCTTTEEECTT----------SCEEE-ECSGGGGGCCSCCCHHHHHHHHHHHH--------HH
T ss_pred             H---hhHHHHHhcCcccccccccccccc----------ccccc-ccccccccccccccchhhhhhhhhhh--------hH
Confidence            5   355555444322111110000000          00000 00000111222222222233333321        11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc---CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeE
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP---VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGIC  408 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~  408 (509)
                      ......+...++..++++++.+.|+++|+++++.   +.++++.+ .+.            +..+.+. +...|+++||.
T Consensus       281 ~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf-~~~------------~~~~~~~-i~~~L~~~gi~  346 (381)
T d1elua_         281 QRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVD------------SPLGHRA-IVQKLEEQRIY  346 (381)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EEC------------SSSCHHH-HHHHHHHTTEE
T ss_pred             HHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEE-EcC------------CCCCHHH-HHHHHHhCCcE
Confidence            1111134456778888899999999999988763   45555543 333            2223333 46778889998


Q ss_pred             EecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cC
Q psy13922        409 IVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQ  486 (509)
Q Consensus       409 v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~  486 (509)
                      ++.   ++.                                                ++          ++|+|+.  ++
T Consensus       347 v~~---~~~------------------------------------------------~~----------~lRis~~~~nt  365 (381)
T d1elua_         347 LRT---IAD------------------------------------------------PD----------CIRACCHYITD  365 (381)
T ss_dssp             CEE---ETT------------------------------------------------TT----------EEEEECCTTCC
T ss_pred             EEe---cCC------------------------------------------------CC----------EEEEecCCCCC
Confidence            763   111                                                33          8999987  79


Q ss_pred             hHHHHHHHHHHHHH
Q psy13922        487 PEKLKAMLEKFREF  500 (509)
Q Consensus       487 ~~~i~~~~~~l~~~  500 (509)
                      .++|+.+++.|+++
T Consensus       366 ~edid~ll~~l~e~  379 (381)
T d1elua_         366 EEEINHLLARLADF  379 (381)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=8.2e-22  Score=201.70  Aligned_cols=376  Identities=13%  Similarity=0.146  Sum_probs=243.9

Q ss_pred             chHHHHHHHHhhcCC------CCCCCC---CCCHHHHHHHHHHHhcccCCCcc-cCCC----CcchHHHHHHHHHHHhhh
Q psy13922          4 VFSLSLQVLALVSLP------QLFDDP---RFPDDVKQRAQAVLDGCRGQSVG-SYTD----SPGIEIIRRHVAQYISRR   69 (509)
Q Consensus         4 ~~~~~~~~~~~~~~~------~~~~~~---~~p~~v~~a~~~~l~~~~~~~~~-~Y~~----~~g~~~lr~~va~~l~~~   69 (509)
                      ++..+|..+...+..      -++++.   ..|..|++++.+.++........ .|..    ..-+.+.|+.++++++. 
T Consensus         3 d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~-   81 (405)
T d1jf9a_           3 SVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA-   81 (405)
T ss_dssp             CHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHhChhcccCcCCCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-
Confidence            345788777666532      245444   46899999999988873211110 0110    12345677888888741 


Q ss_pred             cCCCCCCCcEEEeCCHHHHHHHHHHHhh----cCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEEEecCCCCCCCC
Q psy13922         70 DGQPADWQDVILSAGASDGIKSVLKLLI----EDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIGYYLDESKQWGL  141 (509)
Q Consensus        70 ~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~  141 (509)
                          ..+++|++|+|+|++++.++.++.    .+|+    .|++..-.|++..    ..++..|+++..+|.++++  .+
T Consensus        82 ----~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~----~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g--~~  151 (405)
T d1jf9a_          82 ----RSAEELVFVRGTTEGINLVANSWGNSNVRAGD----NIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG--TL  151 (405)
T ss_dssp             ----SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS--CB
T ss_pred             ----CCcccccccCcHHHHHHHHHhcccccccCCCC----EEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC--cC
Confidence                245799999999999999888743    4555    9999999998754    4446679999999988764  78


Q ss_pred             CHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHh
Q psy13922        142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEM  221 (509)
Q Consensus       142 d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~  221 (509)
                      |++.++.++.+     ++++++++..+|.||..+|   +++|+++|+++|+++++|.+++...     -...+..+..  
T Consensus       152 ~~~~~~~~i~~-----~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~-----~~id~~~~~~--  216 (405)
T d1jf9a_         152 QLETLPTLFDE-----KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMH-----HPVDVQALDC--  216 (405)
T ss_dssp             CGGGHHHHCCT-----TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTT-----SCCCHHHHTC--
T ss_pred             CHHHHHHhccC-----CcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceeccc-----cccchhhcCC--
Confidence            99999988887     8999999999999999999   8889999999999999999987632     2234444322  


Q ss_pred             CCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHH
Q psy13922        222 GEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQA  301 (509)
Q Consensus       222 ~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (509)
                             +++ +.|..|++ |.+|+  |++.   .++++.+.+.............   ..    .+. +   .......
T Consensus       217 -------D~~-~~s~hK~~-Gp~G~--g~l~---v~~~~~~~~~~~~~~~~~~~~~---~~----~~~-~---~~~~~~~  271 (405)
T d1jf9a_         217 -------DFY-VFSGHKLY-GPTGI--GILY---VKEALLQEMPPWEGGGSMIATV---SL----SEG-T---TWTKAPW  271 (405)
T ss_dssp             -------SEE-EEEGGGTT-SCSSC--EEEE---ECHHHHTTCCCSSCSSSSEEEC---CT----TTC-C---EECCTTG
T ss_pred             -------cee-eccccccc-cCCCc--eeee---echhhhcccCcccccccccCcc---cc----ccc-c---ccccchh
Confidence                   255 55999998 88885  5554   3676665443222111111100   00    000 0   0000112


Q ss_pred             hhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC--CceeEEeecCCCC
Q psy13922        302 VLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV--QGAMYAFPQMKLP  379 (509)
Q Consensus       302 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~~g~~~~~~~~~~  379 (509)
                      .++.|+....+..++..+++        |.... .++.+.+....+.+.+.+.++.++.+....+  .++.+. +.++  
T Consensus       272 r~e~GT~~~~~~~~l~~al~--------~~~~~-g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivs-f~~~--  339 (405)
T d1jf9a_         272 RFEAGTPNTGGIIGLGAALE--------YVSAL-GLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLG--  339 (405)
T ss_dssp             GGCCSSCCHHHHHHHHHHHH--------HHHHH-CHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEE-EEET--
T ss_pred             hhcCCCCcHHHHHHHHHHHH--------HHHHh-ChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEE-EEcC--
Confidence            34455555555566555543        21111 2677777778888888889988866655533  344444 3343  


Q ss_pred             HHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhc
Q psy13922        380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLER  459 (509)
Q Consensus       380 ~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (509)
                                +.. .++ +...|+++||.++.|+.|..                               +.+...     
T Consensus       340 ----------~~~-~~~-~~~~L~~~gI~v~~G~~c~~-------------------------------~~~~~~-----  371 (405)
T d1jf9a_         340 ----------KHH-AYD-VGSFLDNYGIAVRTGHHCAM-------------------------------PLMAYY-----  371 (405)
T ss_dssp             ----------TCC-HHH-HHHHHHHTTEECEEECTTCH-------------------------------HHHHHT-----
T ss_pred             ----------CCC-HHH-HHHHHHHCCcEEEccchhhh-------------------------------hHHHhc-----
Confidence                      221 233 46778899999998876543                               111111     


Q ss_pred             ccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHH
Q psy13922        460 TGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                       +   .+|          .+|+|+.  ++.+||+.+++.|+++.+-+
T Consensus       372 -~---~~g----------~iRiS~~~ynt~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         372 -N---VPA----------MCRASLAMYNTHEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             -T---CSC----------EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -C---CCC----------EEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence             0   023          8999999  89999999999999888643

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.3e-20  Score=188.26  Aligned_cols=328  Identities=15%  Similarity=0.153  Sum_probs=225.1

Q ss_pred             CHHHHHHHHHHHhcccCCCccc---CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGS---YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~---Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .|.|++++.+++++...+....   ++...-..++.+.+|+++        ..+.+++++++++|...++..+.+++|  
T Consensus        61 hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~--------g~e~al~~~SG~~An~~~i~~l~~~~d--  130 (401)
T d1fc4a_          61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL--------GMEDAILYSSCFDANGGLFETLLGAED--  130 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHTTHHHHCCTTC--
T ss_pred             CHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh--------cCCceEEecchhhhhHHHHHHhcCCCc--
Confidence            5899999999998844222210   112334457788888777        357899999999999999999999988  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQD  182 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~  182 (509)
                        .|++..-+|.++...+...++++..++.       .|.+.+++.++...+. ....+|++....+..|...+   +++
T Consensus       131 --~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~  198 (401)
T d1fc4a_         131 --AIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKG  198 (401)
T ss_dssp             --EEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHH
T ss_pred             --EEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhH
Confidence              9999999999999999999999888763       3677777777654432 34566667777777888776   899


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |.++|++||+++|+||+++.+.++..  ...........+    +. .+++.|+||.+ |  |..+|++.   ++.++++
T Consensus       199 l~~L~~~~~a~LivDeah~~g~~g~~--G~G~~~~~~~~~----~~-dii~~tl~Ka~-g--g~~Gg~v~---g~~~~~~  265 (401)
T d1fc4a_         199 VCDLADKYDALVMVDDSHAVGFVGEN--GRGSHEYCDVMG----RV-DIITGTLGKAL-G--GASGGYTA---ARKEVVE  265 (401)
T ss_dssp             HHHHHHHTTEEEEEECTTTTTTSSTT--SCCHHHHTTCTT----CC-SEEEEESSSTT-C--SSSCEEEE---ECHHHHH
T ss_pred             HHHHHhhcCcEEEehhhhccccccCC--CCccchhccCCC----CC-eEEEeeccccc-c--cCCccccc---CCHHHHH
Confidence            99999999999999999999887642  223333221111    22 35577999988 3  55678887   8999999


Q ss_pred             HHHHhhhc--c-cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        263 MLHKSISA--M-LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       263 ~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      .++.....  + ...++..                                 ..+++..+            +.....++
T Consensus       266 ~l~~~~~~~~~s~~l~p~~---------------------------------~~aa~~~l------------~~~~~~~~  300 (401)
T d1fc4a_         266 WLRQRSRPYLFSNSLAPAI---------------------------------VAASIKVL------------EMVEAGSE  300 (401)
T ss_dssp             HHHHHCHHHHHSCCCCHHH---------------------------------HHHHHHHH------------HHHHTCHH
T ss_pred             HHHcCChhhhhcCCCCHHH---------------------------------HHHHHhhh------------cccccCHH
Confidence            88765432  1 1222220                                 11111111            11222466


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      ++++++++..++.+.+... ++.+..+++++... .+..+..            ... +.+.|.++||++.+-.....+ 
T Consensus       301 ~~~~l~~~~~~~~~~l~~~-g~~~~~~~~pIv~v-~~~~~~~------------a~~-~~~~L~~~Gi~v~~i~~PtVp-  364 (401)
T d1fc4a_         301 LRDRLWANARQFREQMSAA-GFTLAGADHAIIPV-MLGDAVV------------AQK-FARELQKEGIYVTGFFYPVVP-  364 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBCCSSSSEEEE-EEECHHH------------HHH-HHHHHHHTTEECCEECTTSSC-
T ss_pred             HHHHHHHHHHHHHhhhccc-CCccCCCCCCEEEE-EECCHHH------------HHH-HHHHHHHCCceEEeECCCCCC-
Confidence            7888999999999999888 77766666655432 2321111            122 345566789998864433331 


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKF  497 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l  497 (509)
                                                                    .+        +..+|+++.  +++++|+.+++.|
T Consensus       365 ----------------------------------------------~g--------~~~lRi~~~a~hT~edId~~v~al  390 (401)
T d1fc4a_         365 ----------------------------------------------KG--------QARIRTQMSAAHTPEQITRAVEAF  390 (401)
T ss_dssp             ----------------------------------------------TT--------CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             ----------------------------------------------CC--------CceEEEEECCCCCHHHHHHHHHHH
Confidence                                                          22        338999987  8999999999999


Q ss_pred             HHHHHHH
Q psy13922        498 REFHEEF  504 (509)
Q Consensus       498 ~~~~~~~  504 (509)
                      +++.+++
T Consensus       391 ~ev~~~l  397 (401)
T d1fc4a_         391 TRIGKQL  397 (401)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.6e-20  Score=186.32  Aligned_cols=322  Identities=12%  Similarity=0.077  Sum_probs=222.7

Q ss_pred             CHHHHHHHHHHHhcccCCCcc---cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG---SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGK  103 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~---~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~  103 (509)
                      .|.+++++.+++++...+..+   .++...-..+|.+.+|+++    |    .+..+++++++.+...++.++..++|  
T Consensus        54 ~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g----~e~al~~~SG~~an~~~i~al~~~~d--  123 (383)
T d1bs0a_          54 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G----YSRALLFISGFAANQAVIAAMMAKED--  123 (383)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHCCTTC--
T ss_pred             CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----C----CCceEEecccchhhHHHHHhhcCCCc--
Confidence            578999999999885433222   1333444467777777777    3    56888888889999999999999998  


Q ss_pred             CCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        104 KPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       104 ~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                        .|++....|..+...++..+.+++.++..       |++.|++.+....  ++.++|++..+++++|.+.+   +++|
T Consensus       124 --~v~~d~~~h~si~~g~~~~~~~~~~~~hn-------d~~~le~~l~~~~--~~~~~vv~e~v~s~~G~i~p---l~~l  189 (383)
T d1bs0a_         124 --RIAADRLSHASLLEAASLSPSQLRRFAHN-------DVTHLARLLASPC--PGQQMVVTEGVFSMDGDSAP---LAEI  189 (383)
T ss_dssp             --EEEEETTCCHHHHHHHHTSSSEEEEECTT-------CHHHHHHHHHSCC--SSCEEEEEESBCTTTCCBCC---HHHH
T ss_pred             --eEEeeccccHHHhhccccCCCcceEecch-------HHHHHHHHhcccC--CCceEEEecCCCCCCCcccc---hhHH
Confidence              99999999999999999999999888743       8899999887632  24667778899999999988   8888


Q ss_pred             HHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHH
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAM  263 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~  263 (509)
                      .++|++||+++++||+|+...++..  .....+... .      ...+.+.|+||.+ |.+|   |++.   ++.++++.
T Consensus       190 ~~l~~~~~~~livDeah~~gv~G~~--g~G~~~~~~-~------~~~~~~~t~~ka~-g~~G---g~v~---~~~~~~~~  253 (383)
T d1bs0a_         190 QQVTQQHNGWLMVDDAHGTGVIGEQ--GRGSCWLQK-V------KPELLVVTFGKGF-GVSG---AAVL---CSSTVADY  253 (383)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSSGG--GCCHHHHTT-C------CCSEEEEESSSTT-SSCC---EEEE---ECHHHHHH
T ss_pred             HHHHHhcCcEEEeecceeeeecCCc--ccchHHHcC-C------ccccccccccccc-cccc---cccc---cchhHHHH
Confidence            8899999999999999999887542  223333221 1      1244567999998 6554   8877   78999999


Q ss_pred             HHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHH
Q psy13922        264 LHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL  341 (509)
Q Consensus       264 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  341 (509)
                      ++.....  ++.+..+...+                .             ..+++....             ....+..+
T Consensus       254 l~~~~~~~~~s~~~~p~~~a----------------a-------------~~~a~~~~~-------------~~~~~~~~  291 (383)
T d1bs0a_         254 LLQFARHLIYSTSMPPAQAQ----------------A-------------LRASLAVIR-------------SDEGDARR  291 (383)
T ss_dssp             HHHHCHHHHSSBCCCHHHHH----------------H-------------HHHHHHHHH-------------SHHHHHHH
T ss_pred             HHhhchhhhhcccccchHHH----------------H-------------HHHHHHHHH-------------hhhhHHHH
Confidence            9766442  22222220000                0             111111111             11245677


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCc
Q psy13922        342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGT  421 (509)
Q Consensus       342 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~  421 (509)
                      ..+.++..++.+.|.++ |+.+.++.+.+... .+..+..            ... +.+.|.++||++.+......+   
T Consensus       292 ~~l~~~~~~~~~~l~~~-g~~~~~~~s~Ii~v-~~g~~~~------------a~~-~~~~L~~~Gi~v~~~~~PtVp---  353 (383)
T d1bs0a_         292 EKLAALITRFRAGVQDL-PFTLADSCSAIQPL-IVGDNSR------------ALQ-LAEKLRQQGCWVTAIRPPTVP---  353 (383)
T ss_dssp             HHHHHHHHHHHHHHTTS-SCEECSCCSSBCCE-EEESHHH------------HHH-HHHHHHHTTEECCEECTTSSC---
T ss_pred             HHHHHHHHHHHHHHHhc-CCccCCCCCCEEEE-EECCHHH------------HHH-HHHHHHHCCceEEEEcCCCCC---
Confidence            78888899999999988 77766666554322 1321221            112 455666789999875544432   


Q ss_pred             cccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHH
Q psy13922        422 YHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFRE  499 (509)
Q Consensus       422 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~  499 (509)
                                                                  .+        +..+|+++.  +++++|+.+++.|..
T Consensus       354 --------------------------------------------~g--------~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         354 --------------------------------------------AG--------TARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             --------------------------------------------TT--------CEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             --------------------------------------------CC--------CceEEEEeCCCCCHHHHHHHHHHHHh
Confidence                                                        22        338999988  899999999988875


Q ss_pred             H
Q psy13922        500 F  500 (509)
Q Consensus       500 ~  500 (509)
                      +
T Consensus       382 ~  382 (383)
T d1bs0a_         382 N  382 (383)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.87  E-value=9e-20  Score=184.50  Aligned_cols=326  Identities=13%  Similarity=0.077  Sum_probs=222.5

Q ss_pred             CHHHHHHHHHHHhcccCCCcc---cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh--cCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVG---SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI--EDVD  101 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~---~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd  101 (509)
                      .|.++++..+++++.+.+...   -++...-..+|.+.+|+|+    |    .+..++++++..|...++.++.  .+++
T Consensus        61 ~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~----g----~e~all~~sG~~An~~~i~~l~~~~~~d  132 (396)
T d2bwna1          61 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----Q----KEAALVFSSAYNANDATLSTLRVLFPGL  132 (396)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh----C----CCceeeeecchHHHHHHHHHHhcccCCC
Confidence            578999999999985543322   1222233345666666666    3    5677888888888888888884  5666


Q ss_pred             CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHH
Q psy13922        102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ  181 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~  181 (509)
                          .|+...-.|.+....++..++++..++.+       |++.+++.++...+ .+.++|++....+.+|.+.|   +.
T Consensus       133 ----~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~-~~~~~iv~egvySmdGd~ap---l~  197 (396)
T d2bwna1         133 ----IIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDP-AAPKLIAFESVYSMDGDFGP---IK  197 (396)
T ss_dssp             ----EEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCT-TSCEEEEEESBCTTTCCBCC---HH
T ss_pred             ----ceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcc-cCceeEEEEeeccCcccccc---cH
Confidence                88889999999999999999999888644       67888877765322 25567777899999999988   89


Q ss_pred             HHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHH
Q psy13922        182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK  261 (509)
Q Consensus       182 ~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~  261 (509)
                      +|+++|++||+++++||+|+..+++..  ...+..... +  .  ....|+++||||.+ |..|   |+++   ++++++
T Consensus       198 ~l~~L~~~y~~~L~vDeAHs~Gv~G~~--G~G~~~~~~-~--~--~~~di~~gTlsKa~-g~~G---g~v~---~~~~~i  263 (396)
T d2bwna1         198 EICDIAEEFGALTYIDEVHAVGMYGPR--GAGVAERDG-L--M--HRIDIFNGTLAKAY-GVFG---GYIA---ASARMV  263 (396)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSSTT--SCCHHHHHT-C--G--GGCSEEEEESSSTT-CSCC---EEEE---ECHHHH
T ss_pred             hHHHHhhhhcceeeeccceeeeeeccc--cccchhhcC-C--c--eeeeeeeecccccc-cccc---cccc---hhHHHH
Confidence            999999999999999999999888643  233333211 1  0  12257788999999 6655   8877   899999


Q ss_pred             HHHHHhhhc--ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHH
Q psy13922        262 AMLHKSISA--MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQS  339 (509)
Q Consensus       262 ~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  339 (509)
                      +.+++...+  +..+.++...+.                             ..+++.....             ...++
T Consensus       264 ~~l~~~~~~~ifStalpp~~~aa-----------------------------~~~al~i~~~-------------~~~~~  301 (396)
T d2bwna1         264 DAVRSYAPGFIFSTSLPPAIAAG-----------------------------AQASIAFLKT-------------AEGQK  301 (396)
T ss_dssp             HHHHHHCHHHHTSBCCCHHHHHH-----------------------------HHHHHHHHTS-------------HHHHH
T ss_pred             HHHHhhcchhhhcccCcHHHHHH-----------------------------HHHHHHHhhc-------------chHHH
Confidence            999876542  232222211110                             2222222211             12455


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeeccCCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCC
Q psy13922        340 VLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP  419 (509)
Q Consensus       340 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~  419 (509)
                      .+..++.+..++.+.|... |+.+..+.+.+.-. .+.-+..            ...+..++|+++||++.+......+ 
T Consensus       302 ~r~~l~~~~~~~~~~l~~~-g~~~~~~~spIvpv-~ig~~~~------------~~~~a~~lL~e~Gi~v~~i~~PtVp-  366 (396)
T d2bwna1         302 LRDAQQMHAKVLKMRLKAL-GMPIIDHGSHIVPV-VIGDPVH------------TKAVSDMLLSDYGVYVQPINFPTVP-  366 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCCBCCCSSSCEEE-ECCCHHH------------HHHHHHHHHHHHCEECCEECTTTSC-
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCCcCCCCCCEEEE-EeCCHHH------------HHHHHHHHHHhCCEEEEEECCCcCC-
Confidence            6778888888888888887 77776655554432 2332221            2233456788899999876654442 


Q ss_pred             CccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHH
Q psy13922        420 GTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKF  497 (509)
Q Consensus       420 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l  497 (509)
                                                                    .++.        .+|+++.  +++++|+..++.|
T Consensus       367 ----------------------------------------------~g~~--------rlRi~lsa~ht~edId~l~~~L  392 (396)
T d2bwna1         367 ----------------------------------------------RGTE--------RLRFTPSPVHDLKQIDGLVHAM  392 (396)
T ss_dssp             ----------------------------------------------TTCC--------EEEECCCTTSCHHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCe--------eEEEEeCccCCHHHHHHHHHHH
Confidence                                                          2333        8999998  8999999999988


Q ss_pred             HHH
Q psy13922        498 REF  500 (509)
Q Consensus       498 ~~~  500 (509)
                      +++
T Consensus       393 ~~i  395 (396)
T d2bwna1         393 DLL  395 (396)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.8e-21  Score=195.48  Aligned_cols=199  Identities=17%  Similarity=0.201  Sum_probs=140.4

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC----CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD----SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~----~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~   97 (509)
                      +....|+.|++++.+.+++...+..+.|..    ..-+.+.|+.++++++      +++++|++++|+|++++.++..+.
T Consensus         9 ~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~------~~~~~i~~~~~~T~~l~~~~~~~~   82 (376)
T d1eg5a_           9 ATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATESINWILKTVA   82 (376)
T ss_dssp             TCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEEESCHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEEECCHHHHHHhhhhccc
Confidence            345568899999999998732222111111    1123456888888883      678999999999999999987653


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHH---HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSAS---LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ....++++.|++....|..+...   ++..|++++.+|.+++  +.+|++.+++++++     ++++|++++++|+||..
T Consensus        83 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~--~~id~~~l~~~i~~-----~t~lv~is~v~~~tG~~  155 (376)
T d1eg5a_          83 ETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR--GVVKLEELEKLVDE-----DTFLVSIMAANNEVGTI  155 (376)
T ss_dssp             HHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT--SCBCHHHHHHHCCT-----TEEEEEEESBCTTTCBB
T ss_pred             ccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC--CeECHHHHHHhcCC-----CceEEEEECCcccccee
Confidence            22111223788887777765544   4556999999998865  48899999999988     89999999999999999


Q ss_pred             CCHHHHHHHHHHH--HHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        175 LTKENIQDIIKFA--HREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       175 ~s~~~l~~l~~ia--~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ++.   +++.+++  +..++++++|.++......     ..+..+         +. .+++.|.+|++ |.+|..++|+.
T Consensus       156 ~~~---~~i~~~~~~~~~~~~~~vD~~q~~g~~~-----~d~~~~---------~~-D~~~~s~~K~~-gp~G~~~l~~~  216 (376)
T d1eg5a_         156 QPV---EDVTRIVKKKNKETLVHVDAVQTIGKIP-----FSLEKL---------EV-DYASFSAHKFH-GPKGVGITYIR  216 (376)
T ss_dssp             CCH---HHHHHHHHHHCTTCEEEEECTTTTTTSC-----CCCTTT---------CC-SEEEEEGGGGT-SCTTCEEEEEC
T ss_pred             eee---hhhhhhhhhcccCceeEEEeeecccccc-----cccccc---------Cc-cceecccceee-cCCCceeEEec
Confidence            994   4555554  3458999999988763321     111111         11 24466999998 89998888873

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.87  E-value=2.9e-20  Score=190.20  Aligned_cols=371  Identities=13%  Similarity=0.147  Sum_probs=238.3

Q ss_pred             HHHHHHHhhcCC------CCC---CCCCCCHHHHHHHHHHHhcccCCCcc-cCCC----CcchHHHHHHHHHHHhhhcCC
Q psy13922          7 LSLQVLALVSLP------QLF---DDPRFPDDVKQRAQAVLDGCRGQSVG-SYTD----SPGIEIIRRHVAQYISRRDGQ   72 (509)
Q Consensus         7 ~~~~~~~~~~~~------~~~---~~~~~p~~v~~a~~~~l~~~~~~~~~-~Y~~----~~g~~~lr~~va~~l~~~~g~   72 (509)
                      -||+.+...+..      -++   +...+|+.|++++.+.++........ .|..    ..-+++.|+.++++++     
T Consensus         6 ~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg-----   80 (408)
T d1t3ia_           6 TVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN-----   80 (408)
T ss_dssp             HHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHhCcccccccCCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            466666544321      134   34457899999999998873211111 0111    1233467888888874     


Q ss_pred             CCC-CCcEEEeCCHHHHHHHHHHHh----hcCCCCCCCeEEEcCCCChhHH----HHHHhcCCEEEEEecCCCCCCCCCH
Q psy13922         73 PAD-WQDVILSAGASDGIKSVLKLL----IEDVDGKKPGVLIPIPQYPLYS----ASLAEFNMEQIGYYLDESKQWGLPI  143 (509)
Q Consensus        73 ~~~-~~~i~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~  143 (509)
                       .+ ++.|++|++++++++.++.++    .++|+    +|++..-.|.+..    ..++..|.++..+|.+..+  ..+.
T Consensus        81 -a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~----~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~  153 (408)
T d1t3ia_          81 -ARSPREIVYTRNATEAINLVAYSWGMNNLKAGD----EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQE--SFDL  153 (408)
T ss_dssp             -CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTS--SBCH
T ss_pred             -CCCcccEEeecchHHHHHHHHhhccccccCCCC----EEEeecccchhhhhhhhhhhhccCceEeeeeccccc--cccH
Confidence             44 578999999999999988774    34566    9999998888654    4455679999999887653  6689


Q ss_pred             HHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCC
Q psy13922        144 SELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGE  223 (509)
Q Consensus       144 ~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~  223 (509)
                      +.++..+++     ++++|+++..+|.||..++   +++|.++|+++|+++|+|.+++...     ....+..+.     
T Consensus       154 ~~l~~~~~~-----~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~-----~~id~~~~~-----  215 (408)
T d1t3ia_         154 EHFKTLLSE-----KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPH-----YPLDVQLID-----  215 (408)
T ss_dssp             HHHHHHCCT-----TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTT-----SCCCHHHHT-----
T ss_pred             HHhhhccCC-----CceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceeccc-----ccccccccC-----
Confidence            999988877     8999999999999999999   7888999999999999999987632     233444432     


Q ss_pred             CCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhh
Q psy13922        224 PYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL  303 (509)
Q Consensus       224 ~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (509)
                          .+++ +.|..|++ |.+|+  |++.   .++++...+.....++......         ....+.   .......+
T Consensus       216 ----~D~~-~~s~hK~~-gp~G~--g~l~---v~~~~~~~~~p~~~g~~~~~~~---------~~~~~~---~~~~~~r~  272 (408)
T d1t3ia_         216 ----CDWL-VASGHKMC-APTGI--GFLY---GKEEILEAMPPFFGGGEMIAEV---------FFDHFT---TGELPHKF  272 (408)
T ss_dssp             ----CSEE-EEEGGGTT-SCTTC--EEEE---ECHHHHHHSCCCSCSTTSEEEE---------CSSCEE---ECCTTGGG
T ss_pred             ----CceE-Eecccccc-CCCCc--cccc---cchhhhhcCCceecCCcccccc---------cccccc---cCCchhhh
Confidence                2255 44889998 76775  5554   3666665443222111110000         000000   00111234


Q ss_pred             hcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC------CceeEEeecCC
Q psy13922        304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV------QGAMYAFPQMK  377 (509)
Q Consensus       304 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~~g~~~~~~~~  377 (509)
                      +.|+.......++..+++        |.... .++++.++...+.+++.+.+.+++++.++.+      .+++..+ .++
T Consensus       273 e~Gt~~~~~~~~l~~al~--------~~~~~-g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f-~~~  342 (408)
T d1t3ia_         273 EAGTPAIAEAIALGAAVD--------YLTDL-GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF-NVA  342 (408)
T ss_dssp             CCSSCCHHHHHHHHHHHH--------HHHHH-CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE-EET
T ss_pred             cCCcHHHHHHHHHHHHHH--------HHHHc-CHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEE-EeC
Confidence            555555555666555543        11111 2577778888889999999999887776532      2333332 333


Q ss_pred             CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhh
Q psy13922        378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESL  457 (509)
Q Consensus       378 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (509)
                                  |+. .++ +...|+++||.+..|..|..                               ..+..+   
T Consensus       343 ------------~~~-~~~-v~~~L~~~gI~v~~G~~c~~-------------------------------~~~~~~---  374 (408)
T d1t3ia_         343 ------------GLH-ASD-VATMVDQDGIAIRSGHHCTQ-------------------------------PLHRLF---  374 (408)
T ss_dssp             ------------TBC-HHH-HHHHHHTTTEECBCSCTTCH-------------------------------HHHHHT---
T ss_pred             ------------CCC-HHH-HHHHHhhCCcEEecCccccc-------------------------------HHHHhh---
Confidence                        222 233 45677899999998876543                               111111   


Q ss_pred             hcccccccCCCCCCCCCCceeEEEEee--cChHHHHHHHHHHHHHHHHH
Q psy13922        458 ERTGICIVPGAGFGQVPGTYHFRTTIL--PQPEKLKAMLEKFREFHEEF  504 (509)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~Rls~~--~~~~~i~~~~~~l~~~~~~~  504 (509)
                              ...+        .+|+|+.  ++.+||+.+++.|+++++.|
T Consensus       375 --------~~~g--------~vRiS~~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         375 --------DASG--------SARASLYFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             --------TCCC--------CEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             --------cCCc--------cEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    1112        7999999  89999999999999998754

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1e-20  Score=186.55  Aligned_cols=206  Identities=15%  Similarity=0.131  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeE
Q psy13922         28 DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGV  107 (509)
Q Consensus        28 ~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~V  107 (509)
                      |++++|+.++..    + ...|++.....+|++.+|+++    |    .+++++++||++|+..++++++..|+    .+
T Consensus        14 p~v~~A~~~a~~----g-~~~yg~~p~~~~le~~lA~~~----G----~~~~~~~~sGt~A~~~al~a~~~~g~----~~   76 (343)
T d1m6sa_          14 EEMRKAMAQAEV----G-DDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMAHTQRGD----EV   76 (343)
T ss_dssp             HHHHHHHHTCCC----C-CGGGTCCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHHCCTTC----EE
T ss_pred             HHHHHHHHhhhc----C-CcccCCCHHHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHHHhccCC----ce
Confidence            677887754422    2 234888788899999999988    3    35789999999999999999999998    99


Q ss_pred             EEcCCCChhHHH---HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEE-eCCCCCCCCCCCHHHHHH
Q psy13922        108 LIPIPQYPLYSA---SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVI-INPGNPTGQVLTKENIQD  182 (509)
Q Consensus       108 lv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi-~~p~NPtG~~~s~~~l~~  182 (509)
                      ++..+.+..+..   .....+..+..++....   ..|++.+++.+....++ .++..+++ +.++|+.|.+++.+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (343)
T d1m6sa_          77 ILEADSHIFWYEVGAMAVLSGVMPHPVPGKNG---AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKE  153 (343)
T ss_dssp             EEETTCHHHHSSTTHHHHHTCCEEEEECEETT---EECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred             eccccccceeeecccccccccceeeccccccC---ccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHH
Confidence            999988876543   33444666666654432   56899998888764332 34555554 578999999999999999


Q ss_pred             HHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHH
Q psy13922        183 IIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       183 l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~  262 (509)
                      |.++|+++++++++|++|..+.....  ..........        ....+.+.+|   |..|.+.|+++   ...+.+.
T Consensus       154 i~~~~~~~g~~~~~D~a~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~---~~~g~~~~~~~---~~~~~~~  217 (343)
T d1m6sa_         154 ICTIAKEHGINVHIDGARIFNASIAS--GVPVKEYAGY--------ADSVMFCLSK---GLCAPVGSVVV---GDRDFIE  217 (343)
T ss_dssp             HHHHHHHHTCEEEEEETTHHHHHHHH--CCCHHHHHHT--------CSEEEEESSS---TTCCSSCEEEE---ECHHHHH
T ss_pred             HHHHHHhcCeEEEecccccccccccc--ccchhhhccc--------cccccccccc---ccccccccccc---ccHHHHh
Confidence            99999999999999999987765431  1222222211        1222334344   34567778877   6888777


Q ss_pred             HHHHhhh
Q psy13922        263 MLHKSIS  269 (509)
Q Consensus       263 ~l~~~~~  269 (509)
                      .......
T Consensus       218 ~~~~~~~  224 (343)
T d1m6sa_         218 RARKARK  224 (343)
T ss_dssp             HHHHHHH
T ss_pred             hhHhhCc
Confidence            7766554

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=2.5e-18  Score=167.08  Aligned_cols=163  Identities=14%  Similarity=0.151  Sum_probs=114.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|++++.++...   .. ..|++..+.+++|+.++++++      .++++|++|+|+|+++..++..+..+++    .
T Consensus        13 ~P~v~eAl~~~~~~---~~-~~y~~~~~~~~lr~~ia~~~g------~~~~~v~~tsggtean~~a~~~~~~~~~----~   78 (340)
T d1svva_          13 HPKILDLMARDNMT---QH-AGYGQDSHCAKAARLIGELLE------RPDADVHFISGGTQTNLIACSLALRPWE----A   78 (340)
T ss_dssp             CHHHHHHHHHHTTC---CC-CSTTCSHHHHHHHHHHHHHHT------CTTSEEEEESCHHHHHHHHHHHHCCTTE----E
T ss_pred             CHHHHHHHHHHhhc---CC-CCCCCCHHHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHHHHHhhhcc----c
Confidence            57899999877655   33 348888888899999999993      5678999999999999999999999988    8


Q ss_pred             EEEcCCCChhHHHH--HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHH
Q psy13922        107 VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDI  183 (509)
Q Consensus       107 Vlv~~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG~~~s~~~l~~l  183 (509)
                      +++..+.+..+...  ....+.....+.....   ..+.+...+........ .....++++.+.|..|...+.+++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (340)
T d1svva_          79 VIATQLGHISTHETGAIEATGHKVVTAPCPDG---KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDI  155 (340)
T ss_dssp             EEEETTSHHHHSSTTHHHHTTCCEEEECCTTS---CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred             cccccccceeeeecccccccceeeeecccccc---cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhh
Confidence            88888887765432  2223333333332221   33444444444432111 123344445455556777788999999


Q ss_pred             HHHHHHCCcEEEEcccCCccccc
Q psy13922        184 IKFAHREKLFLFADEVYQDNVYA  206 (509)
Q Consensus       184 ~~ia~~~~i~lI~Deay~~~~~~  206 (509)
                      ..+|++++.++++|++|......
T Consensus       156 ~~~~~~~g~~~~~d~a~~~~~~~  178 (340)
T d1svva_         156 SASCKEHGLYLFLDGARLASALS  178 (340)
T ss_dssp             HHHHHHHTCEEEEECTTHHHHHT
T ss_pred             hcccccccceeeeeccceeeeec
Confidence            99999999999999999765544

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-18  Score=170.25  Aligned_cols=349  Identities=12%  Similarity=0.109  Sum_probs=209.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |+..+|+.|++++.    .   ...++-++  ..-+.++|+.+++++    |.+ +...|++|+|+|++++.++..+..+
T Consensus        26 GP~~~~~~Vl~am~----~---~~i~HRs~~f~~i~~ea~~~l~~ll----g~~-~~~~ii~~gsgT~a~~~~i~~l~~~   93 (388)
T d1h0ca_          26 GPSNLPPRIMAAGG----L---QMIGSMSKDMYQIMDEIKEGIQYVF----QTR-NPLTLVISGSGHCALEAALVNVLEP   93 (388)
T ss_dssp             SCCCCCHHHHHHHT----C---CCCCTTSHHHHHHHHHHHHHHHHHH----TCC-CSEEEEESSCHHHHHHHHHHHHCCS
T ss_pred             CCCCCCHHHHHHhC----c---CCCCCCCHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEcCcHHHHHHHHHHHhhcc
Confidence            56668988887763    2   12222221  123455556666655    522 2236999999999999999999999


Q ss_pred             CCCCCCeEEEcCCCChhHH--HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++    .+++....+.+..  ......+..+..+..+..  ..+|.+.+++.+...    +++++++++.+|.||...+ 
T Consensus        94 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~v~~~~~~n~tG~i~p-  162 (388)
T d1h0ca_          94 GD----SFLVGANGIWGQRAVDIGERIGARVHPMTKDPG--GHYTLQEVEEGLAQH----KPVLLFLTHGESSTGVLQP-  162 (388)
T ss_dssp             SC----CEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT--CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC-
T ss_pred             CC----ceeeecccceeeeeccccccccccccccccCCc--cccchHHHHHHhccC----CcceEEEeeeeeccccccC-
Confidence            88    8988887777543  344556776666665544  367888888877765    8999999999999999988 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|.++|+++|+++++|.+++.....     ..+...         +.+++ +.|..|.+.|.+|  +|++.   .+
T Consensus       163 --i~~i~~~~~~~g~~~~vD~~qs~g~~~-----~d~~~~---------~~D~~-~~s~~K~~~gp~g--~~~~~---~~  220 (388)
T d1h0ca_         163 --LDGFGELCHRYKCLLLVDSVASLGGTP-----LYMDRQ---------GIDIL-YSGSQKALNAPPG--TSLIS---FS  220 (388)
T ss_dssp             --CTTHHHHHHTTTCEEEEECTTTTTTSC-----CCTTTT---------TCSEE-EEESSSTTCCCTT--CEEEE---EC
T ss_pred             --HHHHHHHhhcccccceecccccccccc-----cccccc---------cccee-cccccccccCCCc--eEEEe---ec
Confidence              889999999999999999998764321     111111         12244 4577899855444  45554   47


Q ss_pred             HHHHHHHHHhhhcccC--cchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHH
Q psy13922        258 PGVKAMLHKSISAMLC--PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR  335 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  335 (509)
                      +..++.+.........  .+...............+            ..++.......++..++.         .....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~t~~~~~~~~~~~al~---------~~~~~  279 (388)
T d1h0ca_         221 DKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRM------------YHHTIPVISLYSLRESLA---------LIAEQ  279 (388)
T ss_dssp             HHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCC------------CCSCCCHHHHHHHHHHHH---------HHHHH
T ss_pred             HHHHHhhhhccccccccccccchhhhhhhhcccccc------------ccccccHHHHHHHHHHHH---------HHHHh
Confidence            7777766543221100  000000000000000000            000001011222222211         00111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeeccC----CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPV----QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                      .++.+.+...++.+++.+.+... ++....+    .....+.+.+  |+         |+ +..++...+++++||.+..
T Consensus       280 g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~--p~---------~~-~~~~~~~~L~~~~gI~v~~  346 (388)
T d1h0ca_         280 GLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAV--PA---------GY-DWRDIVSYVIDHFDIEIMG  346 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEEC--CT---------TC-CHHHHHHHHHHHHCEECEE
T ss_pred             ccccccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEEC--CC---------CC-CHHHHHHHHHhcCCEEEeC
Confidence            15666677777788888888876 4443321    1222333333  32         33 3455567888889999998


Q ss_pred             CCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEE-ee--cChH
Q psy13922        412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTT-IL--PQPE  488 (509)
Q Consensus       412 g~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls-~~--~~~~  488 (509)
                      |..+..                                                .+          .||+| +.  ++.+
T Consensus       347 G~~~~~------------------------------------------------~~----------~iRis~~g~~~t~e  368 (388)
T d1h0ca_         347 GLGPST------------------------------------------------GK----------VLRIGLLGCNATRE  368 (388)
T ss_dssp             CCGGGT------------------------------------------------TT----------EEEEECCGGGCSHH
T ss_pred             Cchhhc------------------------------------------------CC----------EEEEeCCCCCCCHH
Confidence            753222                                                22          79999 54  7899


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy13922        489 KLKAMLEKFREFHEEFLAK  507 (509)
Q Consensus       489 ~i~~~~~~l~~~~~~~~~~  507 (509)
                      +|+.+++.|+++++++++|
T Consensus       369 did~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         369 NVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             HHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            9999999999999988765

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=8.8e-18  Score=164.87  Aligned_cols=164  Identities=15%  Similarity=0.085  Sum_probs=122.7

Q ss_pred             CCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q psy13922         26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP  105 (509)
Q Consensus        26 ~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~  105 (509)
                      ..|+|++++.++...    ....|+......++|+.++++++       .+.++++|+|+|+|+..++..++..++    
T Consensus        15 ~~P~v~~A~~~a~~~----~~~~~~~~~~~~~l~~~la~~~g-------~~~~v~f~~sGt~An~~a~~~~~~~~~----   79 (345)
T d1v72a1          15 ASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIFE-------RDVEVFLVPTGTAANALCLSAMTPPWG----   79 (345)
T ss_dssp             CCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHHT-------SCCEEEEESCHHHHHHHHHHTSCCTTE----
T ss_pred             CCHHHHHHHHHHhcc----CccccCCCHHHHHHHHHHHHHHC-------CCcEEEECCchHHHHHHHHHHHHhcCC----
Confidence            367899988775433    33448777888899999999983       235799999999999999999988876    


Q ss_pred             eEEEcCCCChhHH---HHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEE-EEeCCCCCCCCCCCHHHH
Q psy13922        106 GVLIPIPQYPLYS---ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAI-VIINPGNPTGQVLTKENI  180 (509)
Q Consensus       106 ~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~i-vi~~p~NPtG~~~s~~~l  180 (509)
                      .+++....+....   ......+..+..++.+..  ...+++.+++.+...... ..+..+ +...+.|+.|...+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (345)
T d1v72a1          80 NIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA--AKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEI  157 (345)
T ss_dssp             EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGG--GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred             ccccccccceeeechhhHHHhcCccccccccccc--ccccHHHhhhhhcccccccccccceeeeeeccccccccccchhh
Confidence            7777666655433   233445666666654433  367999999988764322 234443 456888999999999999


Q ss_pred             HHHHHHHHHCCcEEEEcccCCccccc
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYA  206 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~  206 (509)
                      +++..+|+++|+++++|+++..+...
T Consensus       158 ~~i~~~~~~~~~~~~~D~~~~~~~~~  183 (345)
T d1v72a1         158 EAIGDVCKSSSLGLHMDGSRFANALV  183 (345)
T ss_dssp             HHHHHHHHHTTCEEEEEETTHHHHHH
T ss_pred             hhHHHHHHhcCceeeecccccceecc
Confidence            99999999999999999999775543

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.78  E-value=7e-17  Score=166.78  Aligned_cols=337  Identities=13%  Similarity=0.116  Sum_probs=215.3

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEE
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ  128 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~  128 (509)
                      |+......+|.+.++++++        .+.++++++|+.|+..++++++++||    .|+... .|......+...|+..
T Consensus        71 Y~~dpt~~~lE~~~a~l~G--------~e~al~~~SGt~An~~a~~~l~~~Gd----~Vi~~~-~f~~~~~~i~~~g~~~  137 (456)
T d1c7ga_          71 YAGSENFYHLEKTVKELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ----YVAGNM-YFTTTRFHQEKNGATF  137 (456)
T ss_dssp             SSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTE----EEEESS-CCHHHHHHHHHTTEEE
T ss_pred             ccCCchHHHHHHHHHHHhC--------CCeEEECCCHHHHHHHHHHHhcCCCC----eEecCc-chHHHHHHHHHcCcee
Confidence            8888888999999999993        56789999999999999999999997    777655 4666666677889988


Q ss_pred             EEEecCC--------CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEccc
Q psy13922        129 IGYYLDE--------SKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFLFADEV  199 (509)
Q Consensus       129 ~~v~~~~--------~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~l~~l~~ia~~~~i~lI~Dea  199 (509)
                      +.+..+.        ...+.+|++.|++.|++..+. ++.++++.+++|+. |.+++.+++++|.++|++||+.+++|++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~-~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a  216 (456)
T d1c7ga_         138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE-NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDAT  216 (456)
T ss_dssp             EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG-GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred             eeccccccccccccCCccccCCHHHHHHHhhhcCCc-cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcc
Confidence            8775432        124578999999999875332 45688889999987 5789999999999999999999999998


Q ss_pred             CCccc------ccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccC
Q psy13922        200 YQDNV------YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLC  273 (509)
Q Consensus       200 y~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~  273 (509)
                      +....      ...+....++.++..++..   ..+++++ |++|.+ |.+  ..|+++.  .++.+.++++.......+
T Consensus       217 ~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~---~ad~~s~-s~~K~~-~~~--~GG~i~~--~~~~l~~~~r~~~~~~~g  287 (456)
T d1c7ga_         217 RCVENAYFIKEQEAGYENVSIKDIVHEMFS---YADGCTM-SGKKDC-LVN--IGGFLCM--NDEEMFSAAKELVVVYEG  287 (456)
T ss_dssp             THHHHHHHHHHHSTTCTTSCHHHHHHHHHT---TCSEEEE-ETTTTT-CCS--SCEEEEE--SCHHHHHHHHHHHHHHTC
T ss_pred             hhhcchhhhcccccccCCCChhhhcccccc---ccccEEE-eccccc-ccc--ceeEEEc--CCHHHHHHHHHhccccCC
Confidence            75321      0111123455555544432   2236655 899998 433  2466653  788888888765432222


Q ss_pred             cchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy13922        274 PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVAD  353 (509)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  353 (509)
                      ....+..+..                            ...++...+.          +..  .....+...++..++.+
T Consensus       288 ~~~~g~~~~~----------------------------~~~a~a~~l~----------e~~--~~~~l~~r~~~~~~L~e  327 (456)
T d1c7ga_         288 MPSYGGLAGR----------------------------DMEAMAIGLR----------EAM--QYEYIEHRVKQVRYLGD  327 (456)
T ss_dssp             CTTTTTCCHH----------------------------HHHHHHHHHH----------HHT--CHHHHHHHHHHHHHHHH
T ss_pred             CcccchhhHH----------------------------HHHHHHHHHH----------Hhc--CHHHHHHHHHHHHHHHH
Confidence            1111000000                            1111111110          000  11223334555678888


Q ss_pred             HHhcCCCCeeccCCceeEEeecCC-----CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccch
Q psy13922        354 TFNSIEGMSCNPVQGAMYAFPQMK-----LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV  428 (509)
Q Consensus       354 ~L~~~~g~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~  428 (509)
                      .|.+. |+.+..+.++...+++..     +|..        . .+...++..++.+.||...+...+...          
T Consensus       328 ~L~~~-g~~vv~p~g~~~v~vda~~~~~~i~~~--------~-~~~~~~~~~l~~~~GIr~~~~g~~~~~----------  387 (456)
T d1c7ga_         328 KLREA-GVPIVEPTGGHAVFLDARRFCPHLTQD--------Q-FPAQSLAASIYMETGVRSMERGIVSAG----------  387 (456)
T ss_dssp             HHHHT-TCCBCSSCCSSEEEEEHHHHCTTSCGG--------G-CHHHHHHHHHHHHHSEECEEESHHHHC----------
T ss_pred             HHHhc-cCCcccCCCCcceeEechhhccCCCcc--------c-ccHHHHHHHHHHHhCeeecccCccccc----------
Confidence            88888 888887777777665432     1110        0 123445667778889975542211100          


Q ss_pred             hhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHHHHHHHHHHHHHHHH
Q psy13922        429 WWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEKLKAMLEKFREFHEE  503 (509)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~i~~~~~~l~~~~~~  503 (509)
                                       .                  .+..+....+..-.+||++.   .|.++||..++.|+++.++
T Consensus       388 -----------------~------------------~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         388 -----------------R------------------SKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             -----------------B------------------CSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             -----------------c------------------CCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence                             0                  01112222333347999987   3889999999999998764

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=1.3e-16  Score=160.58  Aligned_cols=198  Identities=16%  Similarity=0.206  Sum_probs=155.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      ..|.++++-++++.+.+++   +.+. +++  ...++++.++++++        .++++++++||.|+.+++.++ .++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~---~~~~-~G~--~v~~~E~~la~~~g--------~~~ai~~~sgt~Al~~al~al~~~~g   71 (376)
T d1mdoa_           6 SRPAMGAEELAAVKTVLDS---GWIT-TGP--KNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGIGEG   71 (376)
T ss_dssp             CCCCCCHHHHHHHHHHHHH---TCCS-SSH--HHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCHHHHHHHHHHHhc---CCCc-CCH--HHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHhCCCCC
Confidence            4688999989999999998   5554 343  45889999999994        356888888899999999998 6788


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++..+|......+..+|.+++.++++++ .+.+|++.|++.+++     ++++|++++   ..|...+   +
T Consensus        72 d----eVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~-----~tkaIi~~h---~~G~~~~---~  135 (376)
T d1mdoa_          72 D----EVITPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP-----QTKAIIPVH---YAGAPAD---L  135 (376)
T ss_dssp             C----EEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT-----TEEEECCBC---GGGCCCC---H
T ss_pred             C----EEEEecccccccccchhccccceeeeccccc-ccCCCHHHHHHhcCC-----CCeEEEEeC---CCCCccc---h
Confidence            8    9999999999999999999999999999876 578999999999987     799998764   5677655   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCCH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++|.++|+++|++||+|++++......+ ...         +..  +  . .+.||  +|.++  +| ..|.+++  .++
T Consensus       136 ~~i~~i~~~~~i~vIeD~a~a~g~~~~~-~~~---------g~~--g--~-~~~Sf~~~K~l~--~g-~GG~i~t--~~~  195 (376)
T d1mdoa_         136 DAIYALGERYGIPVIEDAAHATGTSYKG-RHI---------GAR--G--T-AIFSFHAIKNIT--CA-EGGIVVT--DNP  195 (376)
T ss_dssp             HHHHHHHHHHTCCBCEECTTCTTCEETT-EET---------TSS--S--E-EEEECCTTSSSC--SS-SCEEEEE--SCH
T ss_pred             hHHHHHHHhcCceEEeccchhccCeeCC-eec---------ccc--c--C-ccccCCCcCCCC--CC-CCCEEEE--ech
Confidence            8999999999999999999987543211 000         100  1  2 23354  69883  44 3566653  889


Q ss_pred             HHHHHHHHhhh
Q psy13922        259 GVKAMLHKSIS  269 (509)
Q Consensus       259 ~~~~~l~~~~~  269 (509)
                      ++.++++.+..
T Consensus       196 ~l~~~~~~~~~  206 (376)
T d1mdoa_         196 QFADKLRSLKF  206 (376)
T ss_dssp             HHHHHHHHHTB
T ss_pred             hHHHHHHhhcc
Confidence            99998887765

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.1e-15  Score=150.74  Aligned_cols=171  Identities=17%  Similarity=0.201  Sum_probs=133.6

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEE
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQI  129 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~  129 (509)
                      -...|.+.++++.+        .+..+++++|+.|+..++..++++||    +|+++...|.+....+    ...|.++.
T Consensus        51 t~~~le~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~~~gd----~vv~~~~~yg~t~~~~~~~~~~~g~~~~  118 (384)
T d1cs1a_          51 TRDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRLFDSLAKRGCYRVL  118 (384)
T ss_dssp             HHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred             HHHHHHHHHHHHhC--------CCceEEecChHHHHHHHHhhcccccc----eecccccccchhhhhhhhhhcccccccc
Confidence            34667788887762        46789999999999999999999999    9999999998865444    44577777


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCC
Q psy13922        130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       130 ~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~  209 (509)
                      .+..       .|.+.++..+..     ++++|++..|.||+..+.+   +++|+++|+++|+++|+|..|......   
T Consensus       119 ~~d~-------~d~~~~~~~~~~-----~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~---  180 (384)
T d1cs1a_         119 FVDQ-------GDEQALRAALAE-----KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ---  180 (384)
T ss_dssp             EECT-------TCHHHHHHHHHT-----CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---
T ss_pred             cccC-------CCHHHHHhhccc-----cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccc---
Confidence            6642       378999999988     8999999999999999988   999999999999999999999643221   


Q ss_pred             ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        210 KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                        .++.     .+.      -|+++|.+|.++|...+=.|.++  +.++.+.+.+.....
T Consensus       181 --~Pl~-----~Ga------DiVvhS~TKyi~Ghsdv~~G~vv--~~~~~~~~~~~~~~~  225 (384)
T d1cs1a_         181 --NPLA-----LGA------DLVLHSCTKYLNGHSDVVAGVVI--AKDPDVVTELAWWAN  225 (384)
T ss_dssp             --CGGG-----GTC------SEEEEETTTTTTCSSCCCCEEEE--ESSHHHHHHHHHHHH
T ss_pred             --cccc-----cCC------CEEEEccccccccCCCccccccc--CCchhhhhhhhhhhh
Confidence              1211     111      46688999999987777777665  367777777766554

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.73  E-value=5.1e-16  Score=160.95  Aligned_cols=348  Identities=16%  Similarity=0.170  Sum_probs=207.4

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC---CCCCeEEEcCCCChhHHHHHHhcC
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD---GKKPGVLIPIPQYPLYSASLAEFN  125 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd---~~~~~Vlv~~p~y~~~~~~~~~~g  125 (509)
                      |+...+..+|++.+++++    |    .++++++++|++|...++++++++++   ..+..++...+.|..+.......|
T Consensus        71 y~~~~~~~~le~~~a~l~----g----~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g  142 (465)
T d1ax4a_          71 YAGSRNYYDLKDKAKELF----N----YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNG  142 (465)
T ss_dssp             SSSCHHHHHHHHHHHHHH----C----CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTT
T ss_pred             hccChHHHHHHHHHHHHH----C----CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcC
Confidence            888888899999999998    2    57899999999999999999986542   012245666666777777788889


Q ss_pred             CEEEEEecC--------CCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCcEEEE
Q psy13922        126 MEQIGYYLD--------ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTG-QVLTKENIQDIIKFAHREKLFLFA  196 (509)
Q Consensus       126 ~~~~~v~~~--------~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~  196 (509)
                      ...+.++..        ....+.+|++.|++++++..+. .+.+++++.++|..| .+++.+++++|.++|++||+++|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~  221 (465)
T d1ax4a_         143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD-NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM  221 (465)
T ss_dssp             CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG-GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc-cccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEE
Confidence            988877532        1234578999999999875332 455666677777765 578999999999999999999999


Q ss_pred             cccCCcccc------cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc
Q psy13922        197 DEVYQDNVY------AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA  270 (509)
Q Consensus       197 Deay~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~  270 (509)
                      |+++.....      .++....+...+.+++...   ..++++ |.+|..   .+.+.|+++. .....+..........
T Consensus       222 D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~d~~s~-s~~k~~---~~~~~g~l~~-~~~~~~~~~~~~~~~~  293 (465)
T d1ax4a_         222 DSARFCENAYFIKARDPKYKNATIKEVIFDMYKY---ADALTM-SAKKDP---LLNIGGLVAI-RDNEEIFTLARQRCVP  293 (465)
T ss_dssp             ECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGG---CSEEEE-ETTSTT---CCSSCEEEEE-SSCHHHHHHHHHHHHH
T ss_pred             ECcchhhhhcccccccccccccchhhhccccccc---cceeEe-ecccCc---ccccceeEee-cchHHHHHhhhccccc
Confidence            999864321      1111123444554444321   123433 666654   5667788862 2233333333322211


Q ss_pred             ccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy13922        271 MLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKM  350 (509)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (509)
                      .......+..+.               .             ...++...+.         +..   .+...+...++.++
T Consensus       294 ~~~~~~~~~~~~---------------~-------------~~~a~~~~~~---------e~~---~~~~~~~~~~~~~~  333 (465)
T d1ax4a_         294 MEGFVTYGGLAG---------------R-------------DMAAMVQGLE---------EGT---EEEYLHYRIGQVKY  333 (465)
T ss_dssp             HTCSTTTTTCCH---------------H-------------HHHHHHHHHH---------HTT---CHHHHHHHHHHHHH
T ss_pred             cccCCCcchhhH---------------H-------------HHHHHhhhhH---------Hhh---hHHHHHHHHHHHHH
Confidence            111111100000               0             1111111110         000   12344455566788


Q ss_pred             HHHHHhcCCCCeeccCCceeEEeecCC--CCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEecCCCCCCCCCccccccch
Q psy13922        351 VADTFNSIEGMSCNPVQGAMYAFPQMK--LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQV  428 (509)
Q Consensus       351 l~~~L~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~r~~~  428 (509)
                      +.+.|+++ ++.++.+.++.+++++..  ++..     .+.+ .....+...++.+.||...+......           
T Consensus       334 l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~ll~~~GI~~~~~~~~~~-----------  395 (465)
T d1ax4a_         334 LGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQI-----PGDQ-FPAQAVINALYLESGVRAVEIGSFLL-----------  395 (465)
T ss_dssp             HHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTS-----CGGG-CHHHHHHHHHHHHHCEECEEESHHHH-----------
T ss_pred             HHHHHHhh-cCccccCCCcceeeeehhhhcCCC-----cccc-chhHHHHHHHHHhcCceecccccccc-----------
Confidence            88999988 778777777777665543  1110     0001 11233456778888987654221100           


Q ss_pred             hhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee---cChHHHHHHHHHHHHHHHHHH
Q psy13922        429 WWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL---PQPEKLKAMLEKFREFHEEFL  505 (509)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~---~~~~~i~~~~~~l~~~~~~~~  505 (509)
                                                +..        +..+....+....+|+++.   .|.+++|..++.|++++++..
T Consensus       396 --------------------------~~~--------~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         396 --------------------------GRD--------PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             --------------------------CBC--------TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             --------------------------ccc--------cccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                      000        1111111223337999864   489999999999999987654

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.73  E-value=2e-15  Score=151.13  Aligned_cols=165  Identities=16%  Similarity=0.199  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~  130 (509)
                      ...|.+.++.+.+        .+..+++++|+.|+..++..++++||    +|+++...|.+....    +...|.++..
T Consensus        65 ~~~LE~~la~LEg--------g~~a~~~sSGmaAi~~~l~~ll~~Gd----~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~  132 (397)
T d1y4ia1          65 TDALEKKLAVLER--------GEAGLATASGISAITTTLLTLCQQGD----HIVSASAIYGCTHAFLSHSMPKFGINVRF  132 (397)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSSCHHHHHHHHTHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhC--------CccceeehHHHHHHHHHHhhccCCCC----eeeeecccccccchhhhcccCCCceEeec
Confidence            3567777777662        45688889999999999999999999    999999999887655    4567999998


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++..       |++.+++++++     ++++|++.+|.||+..+.+   +++|+++|+++|+++|+|..|......    
T Consensus       133 vd~~-------d~~~~~~~i~~-----~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~----  193 (397)
T d1y4ia1         133 VDAG-------KPEEIRAAMRP-----ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ----  193 (397)
T ss_dssp             ECTT-------SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----
T ss_pred             cCCC-------CHHHHHHhcCC-----CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccC----
Confidence            7633       78999999887     8999999999999999977   999999999999999999998753321    


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                       .++     +.+.      -|+++|++|.++|...+=.|.++   .+++.+.+.+
T Consensus       194 -~Pl-----~~Ga------DivihS~TKyi~Ghsdvl~G~v~---~~~~~~~~~r  233 (397)
T d1y4ia1         194 -QPL-----QLGA------DIVVHSVTKYINGHGDVIGGIIV---GKQEFIDQAR  233 (397)
T ss_dssp             -CGG-----GGTC------SEEEEETTTTTTCSSCCCCEEEE---ECHHHHHHHH
T ss_pred             -cch-----hcCC------CEEEEehhhhcCCCcceeeeccC---CCHHHHHHHH
Confidence             221     1111      36688999999987777777776   6777766543

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=8.6e-16  Score=153.79  Aligned_cols=165  Identities=20%  Similarity=0.232  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEE
Q psy13922         55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIG  130 (509)
Q Consensus        55 ~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~  130 (509)
                      ...|.+.++++.+        .+..+++++++.|+..++.+++++||    +|+++...|.+....++    ..|+++..
T Consensus        61 ~~~LE~~la~LEg--------~~~a~~~~SGmaAi~~~l~~l~~~Gd----~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~  128 (392)
T d1gc0a_          61 LNLLEARMASLEG--------GEAGLALASGMGAITSTLWTLLRPGD----EVLLGNTLYGCTFAFLHHGIGEFGVKLRH  128 (392)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred             HHHHHHHHHHHhC--------CcceeehhhHHHHHHHHHHhhccCCC----eeecccccchhhhhhhhhhhccCCccccc
Confidence            4678888888773        46788899999999999999999999    99999999998776654    45999888


Q ss_pred             EecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCc
Q psy13922        131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       131 v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~  210 (509)
                      ++..       |++.+++++++     ++++|++.+|.||+..+.+   ++.|+++|+++|+++|+|..|....+.    
T Consensus       129 ~d~~-------d~~~~~~ai~~-----~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~----  189 (392)
T d1gc0a_         129 VDMA-------DLQALEAAMTP-----ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ----  189 (392)
T ss_dssp             ECTT-------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC----
T ss_pred             CCcc-------CHHHHHHhCCC-----CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc----
Confidence            7533       78999999987     8999999999999999988   999999999999999999999753321    


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                       .++     +.+.      -|+++|.+|.++|...+-.|.++   .+.+.+.+++
T Consensus       190 -~Pl-----~~Ga------DivihS~TKyi~Ghsd~~~G~v~---~~~~~~~~~r  229 (392)
T d1gc0a_         190 -RPL-----ELGA------DLVVHSATKYLSGHGDITAGIVV---GSQALVDRIR  229 (392)
T ss_dssp             -CGG-----GGTC------SEEEEETTTTTTCSSSCCCEEEE---ECHHHHHHHH
T ss_pred             -ChH-----HhCC------CEEEEecceeecCCccccccccc---chhHHHHHHH
Confidence             121     1222      36688999999887777788777   6777776553

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3e-15  Score=154.05  Aligned_cols=194  Identities=9%  Similarity=0.018  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHH-HHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecC
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASD-GIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLD  134 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~-al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~  134 (509)
                      ..+...+.+++.+.+|.+.. ...++|+|+++ ++.+++.++..... +++.|+++...|.++..++..+|++.+.|+..
T Consensus        93 ~~le~~~~~~~~~l~g~~~~-~~~~~~~~~t~~~~~~~l~a~~~~~~-~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~  170 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRP-KAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV  170 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCT-TCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHHHHHhCCCcc-cCccccccchHHHHHHHHHHHHHhCC-CCCEEEEcCcccHHHHHHHHHcCCeeEEEEee
Confidence            45677777777777775433 34555555554 44444444432221 23489999999999999999999999888643


Q ss_pred             C-CCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcccc
Q psy13922        135 E-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS  213 (509)
Q Consensus       135 ~-~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~  213 (509)
                      . +.++.+|++.|++++++.... ++.+|+++.|+|++|.+-+   +++|+++|++||+++++|++|+.+....    ..
T Consensus       171 ~~~~~~~id~~~l~~~i~~~~~~-~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~----~~  242 (445)
T d3bc8a1         171 LEGDELRTDLKAVEAKIQELGPE-HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC----MH  242 (445)
T ss_dssp             EETTEEECCHHHHHHHHHHHCGG-GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HH
T ss_pred             ccCcccccCHHHHHHHHHhcccc-CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc----cc
Confidence            2 235689999999999864222 5778888999999999966   9999999999999999999998643210    11


Q ss_pred             HHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhh
Q psy13922        214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSI  268 (509)
Q Consensus       214 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~  268 (509)
                      ......+.+    ..+++++ |.+|.+ + .+...|++++  .+..+.+.+....
T Consensus       243 ~~~~~~~~~----~vd~~~~-s~hK~~-~-~p~g~~~l~~--~~~~~~~~~~~~~  288 (445)
T d3bc8a1         243 LIQQGARVG----RIDAFVQ-SLDKNF-M-VPVGGAIIAG--FNEPFIQDISKMY  288 (445)
T ss_dssp             HHHHHHHHS----CCCEEEE-EHHHHH-S-CCSSCEEEEE--SCHHHHHHHHHHS
T ss_pred             cchhccCcC----CcceEEe-cCcccc-c-cCCCCceeee--CChHHHHHHHHHH
Confidence            112222222    2235655 889988 4 3334566653  7888888776543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=2.6e-15  Score=149.95  Aligned_cols=213  Identities=12%  Similarity=0.115  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v  131 (509)
                      ..|.+.++.+.+        .+..+++++|+.|+.. +..++++||    +|++..+.|.+....++    ..|.++..+
T Consensus        52 ~~le~~la~LE~--------~~~a~~fsSGMaAisa-ll~ll~~Gd----~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~  118 (380)
T d1ibja_          52 DALESLLAKLDK--------ADRAFCFTSGMAALSA-VTHLIKNGE----EIVAGDDVYGGSDRLLSQVVPRSGVVVKRV  118 (380)
T ss_dssp             HHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTSCTTC----EEEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred             HHHHHHHHHHcC--------CceEEehhhHHHHHHH-HHHhhCCCC----EEEEEecccccccchhhhhhcccccccccc
Confidence            567777777662        4678888888999974 567888998    99999999998876664    458888876


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCcc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      ...       |.+.+++++++     ++++|++..|.||+..+.+   +++|+++|+++|+++|+|..+......     
T Consensus       119 d~~-------~~~~~~~ai~~-----~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~-----  178 (380)
T d1ibja_         119 NTT-------KLDEVAAAIGP-----QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS-----  178 (380)
T ss_dssp             CTT-------SHHHHHHHCCS-----SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC-----
T ss_pred             Ccc-------hHHHHHHHhcc-----CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc-----
Confidence            532       68899988877     8999999999999999988   899999999999999999999753322     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcccC-cchhhhhccccccCCCC
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-PTVLALVSLPQLFDDPR  290 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~  290 (509)
                      .++.     .+.      -|+++|++|.++|...+=.|.+++  .+..+.+.+.......+. .+...            
T Consensus       179 ~Pl~-----~Ga------DiVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~~~~~~~~~G~~l~p~~------------  233 (380)
T d1ibja_         179 RPLE-----LGA------DIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFD------------  233 (380)
T ss_dssp             CGGG-----TTC------SEEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHH------------
T ss_pred             cccc-----cCC------CEEEecccceeccccCcccccccc--chhhHHHHHHhhccccCCcCCHHH------------
Confidence            1211     111      466889999999877777787763  667788888776553332 22220            


Q ss_pred             CchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Q psy13922        291 FPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS  362 (509)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  362 (509)
                                           +...+.               -.+-+....++..++...+.+.|++.|.++
T Consensus       234 ---------------------a~ll~r---------------gl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~  269 (380)
T d1ibja_         234 ---------------------CWLCLR---------------GIKTMALRIEKQQENARKIAMYLSSHPRVK  269 (380)
T ss_dssp             ---------------------HHHHHH---------------HHTTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             ---------------------HHHHHh---------------cchhhhhhHHHHHHHHHHHHHHHHhCCCee
Confidence                                 111111               222266667777888888999999877655

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.71  E-value=1.1e-15  Score=154.10  Aligned_cols=201  Identities=12%  Similarity=0.186  Sum_probs=136.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |+..+|+.|++++    ..   ...++++.  ..-+.++|+.+++++    +.+ +.+.|++++|+|.+++.++..+..+
T Consensus        24 GP~~~~~~V~~Am----~~---~~~~hr~~ef~~i~~~~r~~L~~ll----~~~-~~~~i~~~gsgT~a~ea~~~~l~~~   91 (388)
T d2ch1a1          24 GPSNCSKRVLTAM----TN---TVLSNFHAELFRTMDEVKDGLRYIF----QTE-NRATMCVSGSAHAGMEAMLSNLLEE   91 (388)
T ss_dssp             SSCCCCHHHHHHT----TS---CCCCTTCHHHHHHHHHHHHHHHHHH----TCC-CSCEEEESSCHHHHHHHHHHHHCCT
T ss_pred             CCCCCCHHHHHHh----Cc---CCCCCCCHHHHHHHHHHHHHHHHHh----CCC-CCeEEEEcCcHHHHHHHHHHHhccc
Confidence            5555788888775    22   22333443  223345666666666    432 3445777889999999999999988


Q ss_pred             CCCCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++    .|++..-.+.+.  ...++..+...+.+...+..  ..+.+..+......    +++++++++.+|.||...+ 
T Consensus        92 ~~----~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~v~~~~~~t~tG~~~~-  160 (388)
T d2ch1a1          92 GD----RVLIAVNGIWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELH----QPKCLFLTHGDSSSGLLQP-  160 (388)
T ss_dssp             TC----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC-
T ss_pred             cc----cccccccccccccchhhhhhhccccccccccccc--ccchhhhhhhhccC----Ccceeeeeecccccccccc-
Confidence            87    888776666543  35566778888888776543  56777777777665    8999999999999999988 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|..+|+++|+++++|.+.+.....     ..+...         +.+++ +.|-.|.+.|.+|  +|++.   .+
T Consensus       161 --~~~i~~~~~~~~~~~~vD~~ss~g~~p-----id~~~~---------~~d~~-~~s~~K~~~gp~G--~g~~~---~~  218 (388)
T d2ch1a1         161 --LEGVGQICHQHDCLLIVDAVASLCGVP-----FYMDKW---------EIDAV-YTGAQKVLGAPPG--ITPIS---IS  218 (388)
T ss_dssp             --CTTHHHHHHHTTCEEEEECTTTBTTBC-----CCTTTT---------TCCEE-ECCCC-CCCCCSS--CEEEE---EC
T ss_pred             --hhhhcchhccccceeeeeeeecccccc-----cchhcc---------CceEE-EEccccccCCCCe--EEEEe---cc
Confidence              788888999999999999999874321     222111         12244 4476898855555  45555   47


Q ss_pred             HHHHHHHHHh
Q psy13922        258 PGVKAMLHKS  267 (509)
Q Consensus       258 ~~~~~~l~~~  267 (509)
                      +..++.+...
T Consensus       219 ~~~~~~~~~~  228 (388)
T d2ch1a1         219 PKALDVIRNR  228 (388)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHhhhcc
Confidence            7777766543

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.70  E-value=1.3e-16  Score=163.59  Aligned_cols=215  Identities=11%  Similarity=0.065  Sum_probs=142.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|++++.+++.+   .... ..+.    .....+++.+....+   ..+.+++++++++|++.+++..+.-..  +..
T Consensus        70 hp~i~~ai~~~~~~---~~~~-~~~~----~~~~~la~~~~~~~~---~~~~v~f~~sGseA~e~Alk~ar~~t~--r~~  136 (427)
T d2gsaa_          70 HPEVIEALKVAMEK---GTSF-GAPC----ALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRLMRAYTG--RDK  136 (427)
T ss_dssp             CHHHHHHHHHHHTT---CSCC-SSCC----HHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHC--CCE
T ss_pred             cHHHHHHHHHHHHh---cCcc-ccch----hHHHHHHHHHHhhCC---ccccccccCCcHHHHHHHHHHHHHhcC--CCe
Confidence            68999999999987   3322 2222    345556666655433   346899999999999999998765322  458


Q ss_pred             EEEcCCCChhHHHHHH--------hcCC------------EEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeC
Q psy13922        107 VLIPIPQYPLYSASLA--------EFNM------------EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN  166 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~--------~~g~------------~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~  166 (509)
                      |+....+|++....+.        ..+.            ....++       .-|++.+++.+++...  ++.+|++..
T Consensus       137 ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~~~~~~~~--~iaavi~Ep  207 (427)
T d2gsaa_         137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKALFAENPG--EIAGVILEP  207 (427)
T ss_dssp             EEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHHHHTTSTT--TEEEEEECS
T ss_pred             EEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-------cchHHHHHHHHHhCCC--CeEEEEEcC
Confidence            9999889987543221        1111            111111       2389999999876322  677888754


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC
Q psy13922        167 PGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG  245 (509)
Q Consensus       167 p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G  245 (509)
                      ...-.|. .++++.+++|.++|++||+++|.||++.+|. .+  .......  .++.++     ++   +++|.+ | .|
T Consensus       208 i~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g--~~~~~~~--~gi~PD-----i~---~~gK~l-g-gG  272 (427)
T d2gsaa_         208 IVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IA--YGGVQEK--FGVTPD-----LT---TLGKII-G-GG  272 (427)
T ss_dssp             SBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TB--TTCHHHH--TTCCCS-----EE---EECGGG-G-TT
T ss_pred             CcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ec--ccchHHh--cCCCHH-----HH---hhhhcc-C-CC
Confidence            4444564 7788999999999999999999999999883 33  2333332  223332     44   568999 4 79


Q ss_pred             CeeEEEeeecCCHHHHHHHHHhhh----cccCcchhhhhc
Q psy13922        246 LRGGYSEVINLDPGVKAMLHKSIS----AMLCPTVLALVS  281 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~  281 (509)
                      +.+|.++   ..+++++.+.....    .+.+.+.+++++
T Consensus       273 ~p~~a~~---~~~~i~~~~~~~~~~~~~~T~~gnpla~AA  309 (427)
T d2gsaa_         273 LPVGAYG---GKREIMQLVAPAGPMYQAGTLSGNPLAMTA  309 (427)
T ss_dssp             SCCEEEE---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHH
T ss_pred             cceeeee---ehHHHHHHhcccCCCcCCCCCCCCchhhHH
Confidence            9999987   79999887754221    233455554444

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.69  E-value=4.1e-14  Score=141.74  Aligned_cols=172  Identities=11%  Similarity=0.119  Sum_probs=132.4

Q ss_pred             chHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEE
Q psy13922         54 GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQI  129 (509)
Q Consensus        54 g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~  129 (509)
                      -...|.+.++++.+        .+..+++++|+.|+..++.+++++||    +|++....|.+....+    ...|.++.
T Consensus        68 t~~~LE~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~~~Gd----~iv~~~~~Yg~t~~l~~~~~~~~gi~~~  135 (398)
T d1qgna_          68 TTVVLEEKISALEG--------AESTLLMASGMCASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETILPKMGITAT  135 (398)
T ss_dssp             HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHSCSSC----EEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred             HHHHHHHHHHHHhC--------CceEEEecCcchHHHHHHhhcccccc----cccccccccchhhhhhcccccccccccc
Confidence            33567888887762        46789999999999999999999999    9999999999876665    45688888


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCC
Q psy13922        130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       130 ~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~  209 (509)
                      .++..       +.+..++.+...    ++++|++..|.||+..+.+   +++|+++|+++|+++|+|..+......   
T Consensus       136 ~~~~~-------~~~~~~~~~~~~----~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~---  198 (398)
T d1qgna_         136 VIDPA-------DVGALELALNQK----KVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ---  198 (398)
T ss_dssp             EECSS-------CHHHHHHHHHHS----CEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---
T ss_pred             ccccc-------chhhhhhhhccc----cceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccC---
Confidence            77532       445454444332    8999999999999999977   999999999999999999999653321   


Q ss_pred             ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhc
Q psy13922        210 KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISA  270 (509)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~  270 (509)
                        .++     +.+     . -|+++|.+|.++|...+-.|.++   .+++++..++.....
T Consensus       199 --~Pl-----~~G-----a-DiVihS~TKy~~Ghsdv~~G~v~---~~~~~~~~~~~~~~~  243 (398)
T d1qgna_         199 --KAL-----ALG-----A-DLVLHSATKFLGGHNDVLAGCIS---GPLKLVSEIRNLHHI  243 (398)
T ss_dssp             --CTT-----TTT-----C-SEEEECTTTTTTCSSSCCCEEEE---ECHHHHHHHHHHHHH
T ss_pred             --Cch-----hhC-----C-CEEEEechhhcCcccceeehhhc---chhhhhhhhhhhccc
Confidence              111     111     1 35688999999887777777765   789998888876653

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.7e-16  Score=160.12  Aligned_cols=230  Identities=12%  Similarity=0.061  Sum_probs=138.4

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++++.   .+...  .....+....+++.+.+..... ..+.+++++++++|.+.+++.......  +..
T Consensus        58 ~p~i~~ai~~q~~~~---~~~~~--~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e~Alk~ar~~t~--r~~  129 (425)
T d1sffa_          58 HPKVVAAVEAQLKKL---SHTCF--QVLAYEPYLELCEIMNQKVPGD-FAKKTLLVTTGSEAVENAVKIARAATK--RSG  129 (425)
T ss_dssp             CHHHHHHHHHHTTTC---SCCCT--TTEECHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHT--CCE
T ss_pred             cHHHHHHHHHHHhhc---CCccc--ccccCcHHHHHHHHHHhhhhhc-ccceeeeeccccchhhhHHHHhhhhhc--ccc
Confidence            689999999999882   22111  1111334455566665543211 134799999999999999998865432  458


Q ss_pred             EEEcCCCChhHHHHHHhc-CC-------------EEEEEecC--CCCCCCCC-HHHHHHHHHhhhccCCceEEEEeCCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF-NM-------------EQIGYYLD--ESKQWGLP-ISELERSITEARKHCNPRAIVIINPGN  169 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~--~~~~~~~d-~~~L~~~i~~~~~~~~~~~ivi~~p~N  169 (509)
                      |+....+|++........ |.             .....+..  ....+... ....++.+.......++.+|++...+.
T Consensus       130 ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g  209 (425)
T d1sffa_         130 TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQG  209 (425)
T ss_dssp             EEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCT
T ss_pred             eEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccC
Confidence            999999999876554432 11             11111111  11100001 111222222211123577888754444


Q ss_pred             CCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        170 PTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       170 PtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      ..|. ..+++.++.|.++|++||+++|.||++.++...+.  +.....+  ++.++        +.+++|.+ | .|+++
T Consensus       210 ~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~--~~a~~~~--gv~PD--------i~~~gK~l-~-gG~P~  275 (425)
T d1sffa_         210 EGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAMEQM--GVAPD--------LTTFAKSI-A-GGFPL  275 (425)
T ss_dssp             TTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT--TSCCS--------EEEECGGG-G-TSSCC
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch--hhHHHhc--CCCcc--------ceeccccc-C-CCcce
Confidence            4565 78899999999999999999999999998765542  2222211  23332        44679999 4 79999


Q ss_pred             EEEeeecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        249 GYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                      |.++   .++++++.+..... .+.+.+.+++++
T Consensus       276 ~av~---~~~~i~~~~~~~~~~~T~~gnpl~~aa  306 (425)
T d1sffa_         276 AGVT---GRAEVMDAVAPGGLGGTYAGNPIACVA  306 (425)
T ss_dssp             EEEE---EEHHHHTTSCTTSBCCSSSSCHHHHHH
T ss_pred             EEEE---EcHHHHHhhCCCCCCCCCCcCHHHHHH
Confidence            9998   78998887654332 334455554444

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=1.5e-14  Score=149.74  Aligned_cols=215  Identities=11%  Similarity=0.001  Sum_probs=149.3

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCC-------CCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA-------DWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~-------~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      ++.++-.+....-+   .....|.......++.+.+.+++.+.+|.+-       ....-++|+|+++++...+.+.+..
T Consensus        86 ~~~~l~~~~~~~~n---~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~  162 (476)
T d1js3a_          86 YPAMLADMLCGAIG---CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (476)
T ss_dssp             HHHHHHHHHHHHHC---CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc---ccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHH
Confidence            44555544333333   2222254455568899999999999988652       2235789999999998888665421


Q ss_pred             ----------CC-----CCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc-CCceEEE
Q psy13922        100 ----------VD-----GKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIV  163 (509)
Q Consensus       100 ----------gd-----~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~-~~~~~iv  163 (509)
                                |-     .++..|++++-.|.++..++..+|..+..+|.+++  +.+|++.|++.|++..+. ..+-+|+
T Consensus       163 ~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~--~~md~~~L~~~i~~~~~~g~~p~~Vv  240 (476)
T d1js3a_         163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGK--FAMRASALQEALERDKAAGLIPFFVV  240 (476)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTT--SCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCC--CCcCHHHHHHHHHHHHhcCCCcEEEe
Confidence                      10     01124778889999999999999999999998754  599999999999885443 2345666


Q ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        164 IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       164 i~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      .+..++.+|.+=+   +++|+++|++||+|+.+|.+|+.+..-.. ++...   ...+    +..+.|++ +++|.+ +.
T Consensus       241 ataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~-~~~~~---~~gi----~~aDSit~-d~HK~l-~~  307 (476)
T d1js3a_         241 ATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHL---LNGV----EFADSFNF-NPHKWL-LV  307 (476)
T ss_dssp             EEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGG---GTTG----GGCSEEEE-CHHHHS-SC
T ss_pred             ecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhc-chhhh---hcCC----cccceeee-cCcccc-cc
Confidence            6899999999955   99999999999999999999988764322 12221   1111    12347777 889998 55


Q ss_pred             CCCeeEEEeeecCCHHHHH
Q psy13922        244 CGLRGGYSEVINLDPGVKA  262 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~  262 (509)
                      |. ..|.+++  .++....
T Consensus       308 P~-~~g~~l~--r~~~~~~  323 (476)
T d1js3a_         308 NF-DCSAMWV--KRRTDLT  323 (476)
T ss_dssp             CS-SCEEEEE--SCHHHHH
T ss_pred             CC-cceeecc--cchHHHH
Confidence            54 5666654  6665443

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.69  E-value=1.9e-16  Score=160.79  Aligned_cols=202  Identities=15%  Similarity=0.090  Sum_probs=133.1

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCccc--CCC--CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh---
Q psy13922         24 PRFPDDVKQRAQAVLDGCRGQSVGS--YTD--SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL---   96 (509)
Q Consensus        24 ~~~p~~v~~a~~~~l~~~~~~~~~~--Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---   96 (509)
                      ...|..+++++.+.+..........  +..  ..-..++|+.++++++      .++++|++|+++|++++.++...   
T Consensus        37 g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg------a~~~ei~~~~~~T~~~~~~~~~~~~~  110 (404)
T d1qz9a_          37 GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDGEVVVTDTTSINLFKVLSAALRV  110 (404)
T ss_dssp             CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTTSEEECSCHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC------CCCCcEEEecCchHHHHHHhhhhhhh
Confidence            3357899999999987632111110  111  1233467888887773      78999999999999998877643   


Q ss_pred             ---hcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         97 ---IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        97 ---~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                         ..+++    .|++.+-.+.+........+.++..++.+..+  ..+++.+++++++     ++++|++++.+|.||.
T Consensus       111 ~~~~~~~~----~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~-----~T~lV~i~~v~~~tG~  179 (404)
T d1qz9a_         111 QATRSPER----RVIVTETSNFPTDLYIAEGLADMLQQGYTLRL--VDSPEELPQAIDQ-----DTAVVMLTHVNYKTGY  179 (404)
T ss_dssp             HHHHSTTC----CEEEEETTSCHHHHHHHHHHHHHHCSSCEEEE--ESSGGGHHHHCST-----TEEEEEEESBCTTTCB
T ss_pred             hcccCCCc----EEEEeccccchHHHHHHhhhheeeeeceeccc--cccchhHHHhcCC-----CceEEEEecccccccc
Confidence               23455    78887777666554444443333333322221  4467888888887     8999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      .++   +++|+++|+++++.+++|.++.....     ...+.....         +++ +.|.+|.+.|.+| .+|++. 
T Consensus       180 ~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~-----~~~~~~~~~---------d~~-~~s~~K~~~~~~g-~~g~~~-  239 (404)
T d1qz9a_         180 MHD---MQALTALSHECGALAIWDLAHSAGAV-----PVDLHQAGA---------DYA-IGCTYKYLNGGPG-SQAFVW-  239 (404)
T ss_dssp             BCC---HHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTC---------SEE-EECSSSTTCCCTT-CCCEEE-
T ss_pred             eec---HHHHhccccccccceeEEeecccccc-----ccccccccc---------eEE-EEechhhcccCCc-eEEEEE-
Confidence            999   99999999999999999999987432     233433321         244 4477898732232 345555 


Q ss_pred             ecCCHHHHHHH
Q psy13922        254 INLDPGVKAML  264 (509)
Q Consensus       254 ~~~~~~~~~~l  264 (509)
                        .++.+.+.+
T Consensus       240 --~~~~~~~~~  248 (404)
T d1qz9a_         240 --VSPQLCDLV  248 (404)
T ss_dssp             --ECTTTTTTS
T ss_pred             --echhhhhhC
Confidence              455554433

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.68  E-value=4e-15  Score=150.29  Aligned_cols=201  Identities=13%  Similarity=0.182  Sum_probs=148.8

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCc-ccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCC
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSV-GSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDV  100 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~-~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~g  100 (509)
                      =|.+..+.++++.+.+++   +.. ...++.  ..++.+.+|++++        ..+++.+++||.|+.++++++ .++|
T Consensus         8 ~p~~~~~~~~~~~~~l~~---g~~~~~~g~~--v~~fE~~~a~~~g--------~~~~v~~~SGt~Al~lal~~l~~~~g   74 (384)
T d1b9ha_           8 WPQYDDAERNGLVRALEQ---GQWWRMGGDE--VNSFEREFAAHHG--------AAHALAVTNGTHALELALQVMGVGPG   74 (384)
T ss_dssp             SSCCCHHHHHHHHHHHHT---SCCBTTTCSH--HHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCHHHHHHHHHHHHc---CCeeecCCHH--HHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCC
Confidence            345667788899999998   322 213332  3789999999883        447889999999999999998 5788


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |    .|+++..+|.....++...|++++.++.++. .+.+|++.+++.+..     ++++|++.   +..|...   ++
T Consensus        75 d----eVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~-~~~~d~~~~~~~i~~-----~tk~i~~~---~~~g~~~---d~  138 (384)
T d1b9ha_          75 T----EVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP-----RTKVIMPV---HMAGLMA---DM  138 (384)
T ss_dssp             C----EEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT-----TEEEECCB---CGGGCCC---CH
T ss_pred             C----EEEEecccccccccccccccccccccccccc-ccccchhhhcccccc-----cccccccc---ccccccc---cc
Confidence            8    9999999999999999999999999998765 568899999998877     79998754   4445543   48


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGV  260 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~  260 (509)
                      ++|.++|+++++++|+|.+++......+ ...  ..    .+    +..+++ .+.+|.++  .| ..|.+++  .++++
T Consensus       139 ~~i~~~~~~~~i~lieD~a~a~ga~~~g-~~~--g~----~g----~~~~~S-f~~~K~i~--~g-~GG~i~t--~~~~~  201 (384)
T d1b9ha_         139 DALAKISADTGVPLLQDAAHAHGARWQG-KRV--GE----LD----SIATFS-FQNGKLMT--AG-EGGAVVF--PDGET  201 (384)
T ss_dssp             HHHHHHHHHHTCCBCEECTTCTTCEETT-EEG--GG----SS----SCEEEE-CCTTSSSC--SS-SCEEEEE--CTTCH
T ss_pred             ccchhhhhhhhhhhhhhhceecccccCC-Eec--Cc----cc----ccceec-cccccccc--cc-ccchhhh--hhHHH
Confidence            9999999999999999999987654322 111  11    11    111222 24479883  44 4666653  88899


Q ss_pred             HHHHHHhhh
Q psy13922        261 KAMLHKSIS  269 (509)
Q Consensus       261 ~~~l~~~~~  269 (509)
                      .+.++.+..
T Consensus       202 ~~~~~~~~~  210 (384)
T d1b9ha_         202 EKYETAFLR  210 (384)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888877655

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.68  E-value=7.3e-15  Score=147.26  Aligned_cols=338  Identities=12%  Similarity=0.080  Sum_probs=198.5

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCC--cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS--PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED   99 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~--~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~   99 (509)
                      |+..+|+.|++++    ..   ...++++..  .-+.+.|+.+++++    +.+ +...|++++|+|++++.++..+..+
T Consensus        25 GP~~v~~~Vl~am----~~---~~~~hr~~ef~~i~~~~r~~l~~ll----~~~-~~~~i~~~g~gT~~~~~~~~~~~~~   92 (377)
T d1vjoa_          25 GPSNAHPSVLQAM----NV---SPVGHLDPAFLALMDEIQSLLRYVW----QTE-NPLTIAVSGTGTAAMEATIANAVEP   92 (377)
T ss_dssp             SCCCCCHHHHHHH----SS---CCCCTTSHHHHHHHHHHHHHHHHHH----TCC-CSCEEEESSCHHHHHHHHHHHHCCT
T ss_pred             CCCCCCHHHHHHh----Cc---CCCCCCCHHHHHHHHHHHHHHHHHh----CCC-CCeEEEEcCcHHHHHHHHHHhcccc
Confidence            5666898888775    22   223334331  23445555555555    422 3447888899999999999999998


Q ss_pred             CCCCCCeEEEcCCCChhH--HHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCH
Q psy13922        100 VDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTK  177 (509)
Q Consensus       100 gd~~~~~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~  177 (509)
                      ++    .+++..-.+...  .......+.....+......  ..+.+..+......    +++++.+++.+|.||...+ 
T Consensus        93 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~v~~~~~~~~tg~~~~-  161 (377)
T d1vjoa_          93 GD----VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGE--VFSLEELRTALETH----RPAILALVHAETSTGARQP-  161 (377)
T ss_dssp             TC----EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHH----CCSEEEEESEETTTTEECC-
T ss_pred             cc----ccceeeechhhhhhhhhhhhhcccccccccCCCC--cccchhhhhhhhcC----cceeeeeeeeeccceeeec-
Confidence            87    888776666543  34455566666666554332  44555555555543    7899999999999999988 


Q ss_pred             HHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       178 ~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                        +++|.++|+++|+++++|.+++.....     ..+..+         +.+++ +.|..|.+.|.+|  +|++.   ..
T Consensus       162 --i~~i~~~~~~~g~~~~vDa~~~~g~~~-----~~~~~~---------~~d~~-~~s~~K~~~gp~g--~~~~~---~~  219 (377)
T d1vjoa_         162 --LEGVGELCREFGTLLLVDTVTSLGGVP-----IFLDAW---------GVDLA-YSCSQKGLGCSPG--ASPFT---MS  219 (377)
T ss_dssp             --CTTHHHHHHHHTCEEEEECTTTTTTSC-----CCTTTT---------TCSEE-ECCSSSTTCSCSS--CEEEE---EC
T ss_pred             --hhhhhhhhhhccceEEEecchhhhhhh-----hccccc---------cccee-eecccccccCCCE--EEEec---ch
Confidence              889999999999999999999753321     121111         12244 4577898744444  45554   57


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc----ccchhhcccCCCCCCCCchHHH
Q psy13922        258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV----GQTVMDCVVNPPQPGEPSYEQF  333 (509)
Q Consensus       258 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~al~~~~~~~~~~~~~~~~~  333 (509)
                      +..++...............                ...+. .......+....    ...++..+..         ...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~  273 (377)
T d1vjoa_         220 SRAIEKLQRRRTKVANWYLD----------------MNLLG-KYWGSERVYHHTAPINLYYALREALR---------LIA  273 (377)
T ss_dssp             HHHHHHHHTCSSCCSCSTTC----------------HHHHH-HHHSTTCCCCSCCCHHHHHHHHHHHH---------HHH
T ss_pred             hhHHhhhhccCCCCcceeec----------------cchhh-hccCcccccccccceechhhhHHHHh---------hhh
Confidence            77777665433211110000                00000 000000000000    1111111110         111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cC--CceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        334 SREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PV--QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       334 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      ....+...+..+++..++.+.+... ++... ++  .....+.+.+  |+         |+ +..+++..+++++||.+.
T Consensus       274 ~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~--p~---------~~-~~~~l~~~L~~~~gI~v~  340 (377)
T d1vjoa_         274 QEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCI--PD---------GV-DGKAVARRLLNEHNIEVG  340 (377)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEEC--CT---------TC-CHHHHHHHHHHHHCEECE
T ss_pred             hcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEEC--CC---------CC-CHHHHHHHHHhcCCEEEe
Confidence            1124667777778888888888876 54443 21  1233333323  22         33 345556778889999998


Q ss_pred             cCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEe-e--cCh
Q psy13922        411 PGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI-L--PQP  487 (509)
Q Consensus       411 pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~-~--~~~  487 (509)
                      .|.....                                                .+          .||+|+ .  +++
T Consensus       341 ~G~~~~~------------------------------------------------~~----------~~Ris~~g~~~t~  362 (377)
T d1vjoa_         341 GGLGELA------------------------------------------------GK----------VWRVGLMGFNSRK  362 (377)
T ss_dssp             ECCGGGT------------------------------------------------TT----------EEEEECCGGGCSH
T ss_pred             cCccccc------------------------------------------------CC----------EEEEecCcCCCCH
Confidence            7763211                                                22          899994 4  578


Q ss_pred             HHHHHHHHHHHHHH
Q psy13922        488 EKLKAMLEKFREFH  501 (509)
Q Consensus       488 ~~i~~~~~~l~~~~  501 (509)
                      |+|++.++.|++++
T Consensus       363 edi~~lv~al~~~l  376 (377)
T d1vjoa_         363 ESVDQLIPALEQVL  376 (377)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998876

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.3e-15  Score=153.76  Aligned_cols=362  Identities=11%  Similarity=-0.044  Sum_probs=223.2

Q ss_pred             CCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCC---cEEEeCCHHHHHHHHHHHhhc---
Q psy13922         25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ---DVILSAGASDGIKSVLKLLIE---   98 (509)
Q Consensus        25 ~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~---~i~~t~G~~~al~~~~~~l~~---   98 (509)
                      ++++.+.+.+.+.+.+   + ...+.......++...+.+++.+.+|.+....   .-.+|+|+|+|+.+.+.+...   
T Consensus        65 ~~~~~~~~l~~~~~~~---N-~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~  140 (450)
T d1pmma_          65 WDDENVHKLMDLSINK---N-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWR  140 (450)
T ss_dssp             CCCHHHHHHHHHTTTC---B-TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhc---C-CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHH
Confidence            4567777777666665   2 22244444567888999999988877553222   358999999999998877642   


Q ss_pred             -----CCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 -----DVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 -----~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                           .|......++++...|.++..+++.+|+++..++.++. ++.+|++.|++++++     ++.+|+.+.++|.||.
T Consensus       141 ~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~-~~~~d~~~L~~~i~~-----~t~~Vv~t~gtt~tG~  214 (450)
T d1pmma_         141 KRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPG-QLFMDPKRMIEACDE-----NTIGVVPTFGVTYTGN  214 (450)
T ss_dssp             HHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTT-BCSCCHHHHHHHCCT-----TEEEEECBBSCTTTCB
T ss_pred             HHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCC-CCcCcHHHHHHHhhh-----CceEEEeeeeeccCCC
Confidence                 12212346788888999999999999999999998864 479999999999988     7999999999999999


Q ss_pred             CCCHHHHHHHHH---HHHHCCcEEEEcccCCcccc--cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCee
Q psy13922        174 VLTKENIQDIIK---FAHREKLFLFADEVYQDNVY--AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG  248 (509)
Q Consensus       174 ~~s~~~l~~l~~---ia~~~~i~lI~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~  248 (509)
                      +=+.+++.+|++   +|+++|+++++|.+|+.+..  ...  ..       .....-+..+.+.+ |.+|.+ + ....+
T Consensus       215 ~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~--~~-------~~~~~~~~aDSi~~-s~HK~~-~-~p~g~  282 (450)
T d1pmma_         215 YEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP--DI-------VWDFRLPRVKSISA-SGHKFG-L-APLGC  282 (450)
T ss_dssp             BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT--TC-------CCSTTSTTEEEEEE-ETTTTT-C-CCSSC
T ss_pred             ccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeech--hh-------hhhhcccceeEeec-Chhhcc-C-CCCCe
Confidence            988765555544   46789999999999987542  110  00       00001124457766 889986 3 45568


Q ss_pred             EEEeeecCCHHHHHHHHHhhhcccCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCC
Q psy13922        249 GYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEP  328 (509)
Q Consensus       249 G~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  328 (509)
                      ||+++  .++............+.+....          +  +          .+.++.+.. ...++...+.       
T Consensus       283 g~l~~--r~~~~~~~~~~~~~~yl~~~~~----------~--~----------~~~~sr~~~-~~~~~~~~l~-------  330 (450)
T d1pmma_         283 GWVIW--RDEEALPQELVFNVDYLGGQIG----------T--F----------AINFSRPAG-QVIAQYYEFL-------  330 (450)
T ss_dssp             EEEEE--SSGGGSCGGGCEEEEETTEEEE----------E--C----------CSCCSCBSH-HHHHHHHHHH-------
T ss_pred             eEEEe--cChhhhhhhcccccCcCCCCcC----------C--C----------cccCccchH-HHHHHHHHHh-------
Confidence            88875  6665432211111111110000          0  0          000000000 0011111110       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeccC---Ccee-EEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhh
Q psy13922        329 SYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV---QGAM-YAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER  404 (509)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~  404 (509)
                        ....+.+++..+...++.+++.+.|++++++++..+   ..+. .+.+++.-+.       ..+++ ..+ +...|.+
T Consensus       331 --~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~-------~~~~~-~~~-l~~~L~~  399 (450)
T d1pmma_         331 --RLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-------DPGYT-LYD-LSERLRL  399 (450)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTC-------CCSSC-HHH-HHHHHHT
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcc-------cCCCC-HHH-HHHHHHH
Confidence              112233788888899999999999999988887532   2222 2233332110       01121 223 4566777


Q ss_pred             cCeEEecCCCCCCCCCccccccchhhhhhhHHHHHHHhhcCCCCchhhhhhhhhcccccccCCCCCCCCCCceeEEEEee
Q psy13922        405 TGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL  484 (509)
Q Consensus       405 ~gI~v~pg~~f~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rls~~  484 (509)
                      +|..+.. ..+..                                                 .     ..+...+|+++.
T Consensus       400 ~Gw~v~~-~~~p~-------------------------------------------------~-----~~~~~~lRvvv~  424 (450)
T d1pmma_         400 RGWQVPA-FTLGG-------------------------------------------------E-----ATDIVVMRIMCR  424 (450)
T ss_dssp             TTCBCCE-EECCT-------------------------------------------------T-----CTTCEEEEEECC
T ss_pred             cCCeeec-cCcCC-------------------------------------------------C-----cCCcEEEEEEcc
Confidence            8865431 11111                                                 0     112237999988


Q ss_pred             --cChHHHHHHHHHHHHHHHHHHh
Q psy13922        485 --PQPEKLKAMLEKFREFHEEFLA  506 (509)
Q Consensus       485 --~~~~~i~~~~~~l~~~~~~~~~  506 (509)
                        .+.++++++++.|+++++++.+
T Consensus       425 ~~~t~e~~d~lv~dl~~~v~~l~~  448 (450)
T d1pmma_         425 RGFEMDFAELLLEDYKASLKYLSD  448 (450)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh
Confidence              6889999999999999988765

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=3.3e-15  Score=150.39  Aligned_cols=205  Identities=12%  Similarity=0.089  Sum_probs=135.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCC--CCCCCcEEEeCCHHHHHHHHHHHhhc-
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ--PADWQDVILSAGASDGIKSVLKLLIE-   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~-   98 (509)
                      |+..+|+.|++++.    .   ...+++++.  ..++.+.+.+.+++.++.  +.+++.|++|+|+|++++.++..+.. 
T Consensus        10 GP~~v~~~V~~Am~----~---~~~~hr~~~--f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~   80 (382)
T d2bkwa1          10 GPIILSGAVQKALD----V---PSLGHTSPE--FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS   80 (382)
T ss_dssp             SSCCCCHHHHHTTS----C---CCCCTTSHH--HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred             CCCCCCHHHHHHhC----c---ccCCCCcHH--HHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence            55557888887762    2   222334331  233333344444444442  23566899999999999999999964 


Q ss_pred             --CCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         99 --DVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        99 --~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                        +||    +|++..-.+.+  +...++..|.....+...+. +...+.+.+++.+...    +++++++++.+|.||..
T Consensus        81 ~~~gd----~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~tg~~  151 (382)
T d2bkwa1          81 KAPNK----NVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQN----SYGAVTVTHVDTSTAVL  151 (382)
T ss_dssp             TCSCC----EEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHS----CCSEEEEESEETTTTEE
T ss_pred             cCCCC----ceEEEEechhhhhhhhhccccccccccccccCC-CCccchhHHHHHhhhc----cchheeeeecccccccc
Confidence              555    99988776665  34556677888777754433 2357888888888764    78999999999999999


Q ss_pred             CCHHHHHHHHHHHHHC--CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        175 LTKENIQDIIKFAHRE--KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      .+   +.++...|+++  ++++++|.+++....     ...+...         +.+++++ |-.|.+.|.+|  +|+++
T Consensus       152 ~~---~~~~~~~~~~~~~~~~~~vDa~qs~g~~-----pid~~~~---------giD~~~~-s~~K~l~gP~G--~g~l~  211 (382)
T d2bkwa1         152 SD---LKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEFDEW---------GVDFALT-ASQKAIGAPAG--LSISL  211 (382)
T ss_dssp             CC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCTTTT---------TCSEEEE-ESSSTTCCCSC--EEEEE
T ss_pred             cc---chhhhhhccccccceeeeeecccccccc-----ccccccc---------CeeEEee-cccccCcCCCc--hhhhh
Confidence            88   56666665554  699999999877432     1222111         2336655 77998866777  56666


Q ss_pred             eecCCHHHHHHHHHh
Q psy13922        253 VINLDPGVKAMLHKS  267 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~  267 (509)
                         .+++.++.+...
T Consensus       212 ---vs~~~~~~~~~~  223 (382)
T d2bkwa1         212 ---CSSRFMDYALND  223 (382)
T ss_dssp             ---ECHHHHHHHTCH
T ss_pred             ---ccHHHHhhhhhc
Confidence               488887776543

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.67  E-value=5.3e-15  Score=151.70  Aligned_cols=187  Identities=12%  Similarity=0.057  Sum_probs=127.8

Q ss_pred             HHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCC-CCCCC
Q psy13922         62 VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE-SKQWG  140 (509)
Q Consensus        62 va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~  140 (509)
                      +...+.+..|  .+....+++.|+++++.+++.++....  +++.|+++.-.|.++...+...|++.+.++... +..+.
T Consensus       118 ~~~~~~~~~g--~~~~~~~~~~~t~~~~~~~l~a~r~~~--~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~  193 (434)
T d2z67a1         118 ILESFFKQLG--LNVHAIATPISTGMSISLCLSAARKKY--GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY  193 (434)
T ss_dssp             HHHHHHHHTT--CCCEEEEESSCHHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEE
T ss_pred             HHHHHHHhcC--CCcceeecCcHHHHHHHHHHHHHHHhh--cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccC
Confidence            3333334444  334455666777777777777765421  133999999999999999999999998887432 22457


Q ss_pred             CCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHH
Q psy13922        141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVE  220 (509)
Q Consensus       141 ~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~  220 (509)
                      +|++.|++.+++.....++.+|++++|++++|.+-+   +++|+++|++||+++++|++|+.+...    .........+
T Consensus       194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~----~~~~~~~~~~  266 (434)
T d2z67a1         194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY----YLEKLKKAFK  266 (434)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH----HHHHHHHHHT
T ss_pred             CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhh----cccccccccc
Confidence            999999999987544446778888999999999866   999999999999999999999753311    0011111111


Q ss_pred             hCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        221 MGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       221 ~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                      .     +.+++ +.|.+|.+ | .+...|++.+  .++.+++++.....
T Consensus       267 ~-----~~D~~-~~s~hK~l-~-~~~g~~~~~~--~~~~~~~~~~~~~~  305 (434)
T d2z67a1         267 Y-----RVDAV-VSSSDKNL-L-TPIGGGLVYS--TDAEFIKEISLSYP  305 (434)
T ss_dssp             S-----CCSEE-EEEHHHHH-C-CCSSCEEEEE--SCHHHHHHHHTTSC
T ss_pred             C-----CcceE-EEcCcccc-c-cCCCcccccc--CcHHHHHHHHhhcc
Confidence            1     22355 45889988 4 3334555543  88888888765443

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.3e-14  Score=142.51  Aligned_cols=168  Identities=13%  Similarity=0.154  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v  131 (509)
                      ..|.+.++++.        ..+..+++++|+.|+..++.+++++||    +|++....|.+....++    ..|.++..+
T Consensus        61 ~~le~~la~LE--------g~~~a~~~~SGMaAi~~~l~~l~~~Gd----~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~  128 (391)
T d1cl1a_          61 FSLQQAMCELE--------GGAGCVLFPCGAAAVANSILAFIEQGD----HVLMTNTAYEPSQDFCSKILSKLGVTTSWF  128 (391)
T ss_dssp             HHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred             HHHHHHHHHHh--------CCccEEEeccccceeeehhhcccCCCC----eEEEecccccchhhhhhhcccccccccccc
Confidence            56777777765        246799999999999999999999999    99999999998776654    458888887


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--CCcEEEEcccCCcccccCCC
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR--EKLFLFADEVYQDNVYAEGS  209 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~--~~i~lI~Deay~~~~~~~~~  209 (509)
                      +..       |.+.+++++++     ++++|++.+|.||+..+.+   +++++++|++  +|+++|+|..+......   
T Consensus       129 d~~-------d~~~~~~~i~~-----~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~---  190 (391)
T d1cl1a_         129 DPL-------IGADIVKHLQP-----NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---  190 (391)
T ss_dssp             CTT-------CGGGGGGTCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---
T ss_pred             cCc-------ccccccccccc-----ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh---
Confidence            532       67788877777     7999999999999999987   7788888866  59999999999764332   


Q ss_pred             ccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhh
Q psy13922        210 KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSIS  269 (509)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~  269 (509)
                        .++.     .+.      -|+++|.+|.++|...+=.|.++   .++++...+.....
T Consensus       191 --~Pl~-----~Ga------DivvhS~TKy~~GhsdvlgG~vv---~~~~~~~~~~~~~~  234 (391)
T d1cl1a_         191 --KALD-----FGI------DVSIQAATKYLVGHSDAMIGTAV---CNARCWEQLRENAY  234 (391)
T ss_dssp             --CGGG-----GTC------SEEEEETTTTTTCSSSCCCEEEE---ECTTTHHHHHHHHH
T ss_pred             --cccc-----ccc------ceEEeecchhcccccccccccee---ccccccccchhhhh
Confidence              1211     111      46688999999987777777776   57777777765544

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.7e-15  Score=153.08  Aligned_cols=216  Identities=12%  Similarity=0.107  Sum_probs=143.2

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      .|.|.+++.+++++.   ....+..  . .+.+..+++.+.....  ...+.+++++++++|+..+++..+.-..  ++.
T Consensus        55 hp~v~~a~~~~~~~~---~~~~~~~--~-~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e~Aik~Ar~~t~--r~~  124 (387)
T d1vefa1          55 NPEVVEAVKRQAETL---MAMPQTL--P-TPMRGEFYRTLTAILP--PELNRVFPVNSGTEANEAALKFARAHTG--RKK  124 (387)
T ss_dssp             CHHHHHHHHHHHHHC---CCCCTTS--C-CHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHHHHHHHHHHHHS--CCE
T ss_pred             cHHHHHHHHHHHHhh---ccccccc--C-CchHHHHHHHhhhhcc--ccceeeccccCchHHHHHHHHHHHhhcc--cce
Confidence            689999999999882   2211111  1 3355555655544322  2234799999999999999998765432  458


Q ss_pred             EEEcCCCChhHHHHHHhc-C------------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922        107 VLIPIPQYPLYSASLAEF-N------------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |+....+|++....+... |            ..+..+|.       .|++.|++.+.+     ++.+|++.......|.
T Consensus       125 ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~-----~iAavi~EPi~g~~G~  192 (387)
T d1vefa1         125 FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDE-----ETAAVILEPVQGEGGV  192 (387)
T ss_dssp             EEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCT-----TEEEEEECSEETTTTS
T ss_pred             ecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCC-----CeEEEEEECCCCCCCC
Confidence            999998898865443332 1            12333332       278899888876     7888888544555675


Q ss_pred             -CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        174 -VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       174 -~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                       ..+++.+++|.++|++||+++|.||++.+|...+  .......  .++.++        +.+++|.+ | .|+.++.++
T Consensus       193 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G--~~~~~~~--~~v~PD--------i~~~gK~l-~-gG~~~~~~~  258 (387)
T d1vefa1         193 RPATPEFLRAAREITQEKGALLILDEIQTGMGRTG--KRFAFEH--FGIVPD--------ILTLAKAL-G-GGVPLGVAV  258 (387)
T ss_dssp             EECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS--SSSTHHH--HTCCCS--------EEEECGGG-G-TTSSCEEEE
T ss_pred             ccCCHHHHHHHHHHHHHcCceEEecccccccCccC--CCccccc--CCcCCc--------eeeecccC-C-CCccccccc
Confidence             6889999999999999999999999999986654  2233332  234333        44669999 4 899999887


Q ss_pred             eecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        253 VINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                         ..+++++.+..... .+.+.+++++++
T Consensus       259 ---~~~~~~~~~~~~~~g~T~~gnPla~aa  285 (387)
T d1vefa1         259 ---MREEVARSMPKGGHGTTFGGNPLAMAA  285 (387)
T ss_dssp             ---EEHHHHHTSCTTSSCCSSTTCHHHHHH
T ss_pred             ---cceeeeeccccCCccccCCCCcchhhh
Confidence               67777776644332 334455554333

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-15  Score=152.20  Aligned_cols=217  Identities=10%  Similarity=0.063  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC------C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED------V  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------g  100 (509)
                      +|.|.+++.++++........ |. ..-..++.+.+++..        ..+.+++++++++|...+++..+..      .
T Consensus        59 ~p~i~~Av~~q~~~~~~~~~~-~~-~~~~~~~~~~~~~~~--------~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~  128 (404)
T d2byla1          59 HPKIVNALKSQVDKLTLTSRA-FY-NNVLGEYEEYITKLF--------NYHKVLPMNTGVEAGETACKLARKWGYTVKGI  128 (404)
T ss_dssp             CHHHHHHHHHHHTTCCCCCTT-EE-ESSHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHhhCCCcccc-cc-cchHHHHHHhhhhcc--------cccccccccCccccchhHHHHHHHHhhhcccc
Confidence            688999999999873211111 11 121233444444443        3468999999999999999887531      1


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcC-------------CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFN-------------MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      ...+..++...-.|++.........             ..+..+|       ..|++.+++.+.+.    ++.+|++...
T Consensus       129 ~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p-------~~d~~~l~~~l~~~----~iAaviiEPi  197 (404)
T d2byla1         129 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIP-------YNDLPALERALQDP----NVAAFMVEPI  197 (404)
T ss_dssp             CTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEEC-------TTCHHHHHHHHTST----TEEEEEECSS
T ss_pred             ccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEec-------ccCHHHHHHhcCCC----CeEEEEECCc
Confidence            1123467777777775433322211             1122232       23789999988753    7888888644


Q ss_pred             CCCCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-
Q psy13922        168 GNPTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-  245 (509)
Q Consensus       168 ~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-  245 (509)
                      ....| ..++++.+++|.++|++||+++|.||++.+|...+.  ......  .++.++     ++   +++|.+ | .| 
T Consensus       198 ~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~a~~~--~gv~PD-----i~---~~gK~l-~-gG~  263 (404)
T d2byla1         198 QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVDY--ENVRPD-----IV---LLGKAL-S-GGL  263 (404)
T ss_dssp             BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTCCCS-----EE---EECGGG-G-TTS
T ss_pred             cCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc--cchhhh--cCCCCC-----EE---EECchh-h-CCC
Confidence            55566 577889999999999999999999999999866542  222222  122222     33   779999 4 56 


Q ss_pred             CeeEEEeeecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        246 LRGGYSEVINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       246 lr~G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                      +++|.++   .++++.+.+..... .+.+.+.+++++
T Consensus       264 ~p~~av~---~~~~i~~~~~~~~~~~T~~gnpl~~aa  297 (404)
T d2byla1         264 YPVSAVL---CDDDIMLTIKPGEHFSTYGGNPLGCRV  297 (404)
T ss_dssp             SCCEEEE---ECHHHHTTSCTTSSCCSSTTCHHHHHH
T ss_pred             ccceeee---echhhhhccCCCCCCcCCCcCHHHHHH
Confidence            8999998   68888877654332 233445553333

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=1.5e-15  Score=151.46  Aligned_cols=198  Identities=16%  Similarity=0.088  Sum_probs=126.3

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCC--CcchHHHHHHHHHHHhhhcCCCCCCCc--EEEeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTD--SPGIEIIRRHVAQYISRRDGQPADWQD--VILSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~--~~g~~~lr~~va~~l~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~   97 (509)
                      |+-.+|+.|++++.    .   ...+++++  ..-..+.|+.++++++      +++++  +++|+|+|++++.++..+.
T Consensus         7 GP~~~~~~V~~A~~----~---~~~~~~~~~~~~~~~~~r~~l~~l~~------~~~~~~~i~~t~s~T~~~~~~~~~l~   73 (361)
T d1m32a_           7 GPLTTSRTVKEAML----F---DSCTWDDDYNIGVVEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSAL   73 (361)
T ss_dssp             SSCCCCHHHHHTTC----C---CCCTTSHHHHTTTHHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHhh----h---hccCCCcHHHHHHHHHHHHHHHHHhC------CCCCCEEEEECCCHHHHHHHHHHHhh
Confidence            45557888877652    2   12222221  2345778888888883      44444  7888999999999999998


Q ss_pred             cCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      .+++    .+++....+..  ........+.....+..........+.+.+......     +++++.++..+|.||...
T Consensus        74 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tG~~~  144 (361)
T d1m32a_          74 GPQD----KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP-----TISHIAMVHSETTTGMLN  144 (361)
T ss_dssp             CTTC----CEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT-----TCCEEEEESEETTTTEEC
T ss_pred             hhcc----ccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhcc-----CccceEEEeeecccccch
Confidence            8776    66665544433  233345556666666555442112222223322233     799999999999999998


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeec
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN  255 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~  255 (509)
                      +   +++|.++|+++|+++++|.+++.....     ..+..+         +.+++ +.|..|.+.|.+|  +|++.   
T Consensus       145 ~---i~~i~~~~~~~g~~~~vDa~qs~G~~~-----~d~~~~---------~~D~~-~~s~~K~l~gp~G--~g~l~---  201 (361)
T d1m32a_         145 P---IDEVGALAHRYGKTYIVDAMSSFGGIP-----MDIAAL---------HIDYL-ISSANKCIQGVPG--FAFVI---  201 (361)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCTTTT---------TCSEE-EEESSSTTCCCSS--EEEEE---
T ss_pred             h---hhhhhhhhcccceeeEeecccccCccc-----cccccc---------ccceE-EeeecccccCCCC--ceEEE---
Confidence            8   889999999999999999999874321     122211         12244 4588998855566  56665   


Q ss_pred             CCHHHHHHH
Q psy13922        256 LDPGVKAML  264 (509)
Q Consensus       256 ~~~~~~~~l  264 (509)
                      .+++..+..
T Consensus       202 ~~~~~~~~~  210 (361)
T d1m32a_         202 AREQKLAAC  210 (361)
T ss_dssp             EEHHHHTTC
T ss_pred             echhhhhhh
Confidence            355555444

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.63  E-value=3.1e-14  Score=142.97  Aligned_cols=200  Identities=15%  Similarity=0.196  Sum_probs=149.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc-CC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE-DV  100 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~g  100 (509)
                      ..|.+.++-++++.+.+++   +++. .++  -...+.+.++++++        ..++++++++|.|+.++++++.- ++
T Consensus         6 ~~p~~~~~~~~~v~~~l~~---~~~~-~G~--~v~~fE~~~~~~~g--------~k~ai~~~Sgt~Al~~al~al~~~~~   71 (371)
T d2fnua1           6 SEPCLDKEDKKAVLEVLNS---KQLT-QGK--RSLLFEEALCEFLG--------VKHALVFNSATSALLTLYRNFSEFSA   71 (371)
T ss_dssp             CCCCCCHHHHHHHHHHHTS---SCCS-SSH--HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHSSCCCT
T ss_pred             CCCCCCHHHHHHHHHHHcC---CCcc-CCH--HHHHHHHHHHHHHC--------cCeEEEEecHHHHHHHHHHHhcccCC
Confidence            5688889999999999987   5555 343  34789999999984        34788999999999999999854 33


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHH
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI  180 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l  180 (509)
                      |  ++.|+++..+|.....++...|++++.++++++.  .++.+.+++.+.+     ++++|++++   ..|...+   +
T Consensus        72 ~--~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~-----~t~avi~vh---~~G~~~~---~  136 (371)
T d2fnua1          72 D--RNEIITTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINE-----RTKAIVSVD---YAGKSVE---V  136 (371)
T ss_dssp             T--SCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCT-----TEEEEEEEC---GGGCCCC---H
T ss_pred             C--CCeeecccccccccceeeeccCcccccccccccc--cccchhhhhhccc-----hhhcccccc---ccccccc---c
Confidence            2  5589999999999999999999999999998764  3456777776666     799998764   3466544   8


Q ss_pred             HHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCCH
Q psy13922        181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLDP  258 (509)
Q Consensus       181 ~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~~  258 (509)
                      ++|.++|++++++||+|.+++......+ ....         ..    -.+.+.||  +|.++  +|- .|.++  +.++
T Consensus       137 ~~i~~~~~~~~i~lIEDaaqa~Ga~~~~-~~~G---------~~----g~~~~~Sf~~~K~l~--~g~-GG~i~--t~~~  197 (371)
T d2fnua1         137 ESVQKLCKKHSLSFLSDSSHALGSEYQN-KKVG---------GF----ALASVFSFHAIKPIT--TAE-GGAVV--TNDS  197 (371)
T ss_dssp             HHHHHHHHHHTCEEEEECTTCTTCEETT-EETT---------SS----SSEEEEECCTTSSSC--CSS-CEEEE--ESCH
T ss_pred             ccccccccccchhhccchhhccCceecc-ccCC---------cc----ccccccccccccccc--ccc-ceEEE--eech
Confidence            8999999999999999999988554322 1110         00    02334455  79984  453 66665  3899


Q ss_pred             HHHHHHHHhhh
Q psy13922        259 GVKAMLHKSIS  269 (509)
Q Consensus       259 ~~~~~l~~~~~  269 (509)
                      ++.+.++.+..
T Consensus       198 ~~~~~~~~~~~  208 (371)
T d2fnua1         198 ELHEKMKLFRS  208 (371)
T ss_dssp             HHHHHHHHHTB
T ss_pred             hhhhhcccccc
Confidence            99999987765

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.63  E-value=1.5e-13  Score=137.75  Aligned_cols=164  Identities=15%  Similarity=0.192  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v  131 (509)
                      ..|.+.++++.    |    .+..+++++++.|+..++.++.++||    .|++....|.+....    +...|.++..+
T Consensus        62 ~~le~~la~LE----g----~~~a~~~sSGmaAi~~~~l~l~~~gd----~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~  129 (394)
T d1e5ea_          62 SNLEGKIAFLE----K----TEACVATSSGMGAIAATVLTILKAGD----HLISDECLYGCTHALFEHALTKFGIQVDFI  129 (394)
T ss_dssp             HHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHh----C----CcceeeeccchHHHHHHHHhhccccc----ccccccceeehhhHhHHHHhhccceeeecc
Confidence            55677777665    2    46788899999999999999999999    999999999876544    55679999988


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH-CCcEEEEcccCCcccccCCCc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR-EKLFLFADEVYQDNVYAEGSK  210 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~-~~i~lI~Deay~~~~~~~~~~  210 (509)
                      +..       |.+.+++++++     ++++|++..|.||+..+.+   ++++++++++ +|+++|+|..+......    
T Consensus       130 d~~-------d~~~~~~~i~~-----~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~----  190 (394)
T d1e5ea_         130 NTA-------IPGEVKKHMKP-----NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT----  190 (394)
T ss_dssp             CTT-------STTHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC----
T ss_pred             CCC-------CHHHHHHhhcc-----cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC----
Confidence            754       57888888887     8999999999999999977   7788876665 68999999999753322    


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                       .++     +.+.      -|+++|.+|.++|...+-.|.++   .+.+.....+
T Consensus       191 -~Pl-----~~Ga------DiVvhS~TKy~~GhsDv~~G~v~---~~~~~~~~~~  230 (394)
T d1e5ea_         191 -NPV-----DFGV------DVVVHSATKYINGHTDVVAGLIC---GKADLLQQIR  230 (394)
T ss_dssp             -CGG-----GGTC------SEEEEETTTTTTCSSCCCCEEEE---ECHHHHHHHH
T ss_pred             -Cch-----hcCC------CEEEechhhhcCCCccccccccc---chhhHHHHHH
Confidence             121     1111      36688999999988778788776   6777776554

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.62  E-value=9e-14  Score=136.50  Aligned_cols=163  Identities=17%  Similarity=0.235  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCEEEEEe
Q psy13922         57 IIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNMEQIGYY  132 (509)
Q Consensus        57 ~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~~~~v~  132 (509)
                      .|.+.+|.+.+        .+..+++++|+.|+..++..++++||    +|+++.+.|.+....    ++..|.++..++
T Consensus         2 aLE~~la~Leg--------~~~a~~~sSGMaAi~~~l~~ll~~Gd----~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d   69 (331)
T d1pffa_           2 ALEGKIAKLEH--------AEACAATASGMGAIAASVWTFLKAGD----HLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence            47788888872        56788999999999999999999999    999999999876544    456799998876


Q ss_pred             cCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHH-HHCCcEEEEcccCCcccccCCCcc
Q psy13922        133 LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFA-HREKLFLFADEVYQDNVYAEGSKF  211 (509)
Q Consensus       133 ~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia-~~~~i~lI~Deay~~~~~~~~~~~  211 (509)
                      ..       |++.+++++++     ++++|++..|.||+..+.+   ++.+++++ +++|+++|+|..+......     
T Consensus        70 ~~-------d~~~~~~~i~~-----~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~-----  129 (331)
T d1pffa_          70 MA-------VPGNIEKHLKP-----NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT-----  129 (331)
T ss_dssp             TT-------STTHHHHTCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC-----
T ss_pred             cc-------chhhHhhhccc-----ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc-----
Confidence            43       67888888887     8999999999999999988   77777764 6789999999999753322     


Q ss_pred             ccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        212 YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      .++     +.+.      -|+++|.+|.++|....-.|.++   .+++.....+
T Consensus       130 ~pl-----~~Ga------DiVv~S~TKy~~Gh~d~~~G~v~---~~~~~~~~~~  169 (331)
T d1pffa_         130 NPL-----DLGV------DIVVHSATKYINGHTDVVAGLVC---SRADIIAKVK  169 (331)
T ss_dssp             CGG-----GGTC------SEEEEETTTTTSSSSSCCCEEEE---ECHHHHHHHH
T ss_pred             ccc-----ccCC------CEEEecchhhcCCCCcccccccc---ccccchhhhh
Confidence            111     1111      35688999999887777778776   5666555543

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.60  E-value=4e-14  Score=143.75  Aligned_cols=224  Identities=9%  Similarity=0.045  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcC------C
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIED------V  100 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------g  100 (509)
                      +|.|.+++.+++.+..   +. +....  ....+.+++.+....    ..+.+.++.+++++...+++.....      +
T Consensus        57 ~p~v~~Ai~~q~~~~~---~~-~~~~~--~~~~~~~~~~~~~~~----~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~  126 (404)
T d1z7da1          57 HPNILNAMINQAKNLT---IC-SRAFF--SVPLGICERYLTNLL----GYDKVLMMNTGAEANETAYKLCRKWGYEVKKI  126 (404)
T ss_dssp             CHHHHHHHHHHHTTCS---CC-CTTSE--EHHHHHHHHHHHHHH----TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cHHHHHHHHHHHHhCC---Cc-ccccc--hHHHHHHHHhhhhcc----ccceeeeeccccchHHHHHHHHHHHHhhcccc
Confidence            6899999999988732   22 11111  122333444444332    3467999999999999998876421      1


Q ss_pred             CCCCCeEEEcCCCChhHHHHHHhcC-CEE---EEEecCCC--CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC-
Q psy13922        101 DGKKPGVLIPIPQYPLYSASLAEFN-MEQ---IGYYLDES--KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ-  173 (509)
Q Consensus       101 d~~~~~Vlv~~p~y~~~~~~~~~~g-~~~---~~v~~~~~--~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~-  173 (509)
                      ......++...-.|++......... ...   ...|..+.  ....-+.+.++..+...    ++.+|++...+...|. 
T Consensus       127 ~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~iAavi~EPi~g~~G~~  202 (404)
T d1z7da1         127 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDP----NVCAFIVEPIQGEAGVI  202 (404)
T ss_dssp             CTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTST----TEEEEEECSSBSTTTSB
T ss_pred             cccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCC----CEEEEEEEEEcCCCCCc
Confidence            1122367777777776544333221 110   01111000  00012466666665443    6788888655666675 


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCC-CeeEEEe
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG-LRGGYSE  252 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~G-lr~G~v~  252 (509)
                      ..+++.+++|.++|++||+++|.||++.+|...+.  .......  ++.++     ++   +++|.+ | .| +++|.++
T Consensus       203 ~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~--~~~~e~~--gv~PD-----iv---t~gK~l-~-gG~~p~~~v~  268 (404)
T d1z7da1         203 VPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVHHY--NVKPD-----VI---LLGKAL-S-GGHYPISAVL  268 (404)
T ss_dssp             CCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGGG--TCCCS-----EE---EECGGG-G-TTSSCCEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc--ccccccc--CCCCC-----EE---EEcccc-c-CCCCCccccc
Confidence            66788899999999999999999999998865542  2222221  23222     44   679999 4 55 8999998


Q ss_pred             eecCCHHHHHHHHHhhh-cccCcchhhhhc
Q psy13922        253 VINLDPGVKAMLHKSIS-AMLCPTVLALVS  281 (509)
Q Consensus       253 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  281 (509)
                         .++++.+.+..... .+++.+++++++
T Consensus       269 ---~~~~i~~~~~~~~~~~T~~gnpl~~aa  295 (404)
T d1z7da1         269 ---ANDDIMLVIKPGEHGSTYGGNPLAASI  295 (404)
T ss_dssp             ---ECHHHHTTCCTTCCCCTTTTCHHHHHH
T ss_pred             ---chHHHHccCCCCCcCcCCCCCcchhhh
Confidence               78888887754432 233445554444

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=2.8e-13  Score=136.45  Aligned_cols=155  Identities=15%  Similarity=0.126  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHH----HhcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL----AEFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~----~~~g~~~~~v  131 (509)
                      ..|.+.++.+.+        .+..+++++|+.|+..++..++++||    +|+++...|.+....+    ...|.++..+
T Consensus        61 ~~LE~~la~LE~--------~~~a~~~~SGmaAi~~~~~~l~~~gd----~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~  128 (421)
T d2ctza1          61 DVLEKRLAALEG--------GKAALATASGHAAQFLALTTLAQAGD----NIVSTPNLYGGTFNQFKVTLKRLGIEVRFT  128 (421)
T ss_dssp             HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred             HHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhhccccc----ceeecCCcCCchhHHHHHHHhhccccceec
Confidence            557777777662        46788999999999999999999999    9999999998876554    5679998876


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCc-ccccCCCc
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD-NVYAEGSK  210 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~-~~~~~~~~  210 (509)
                      +.++      +.+..+..+++     ++++|++.+|.||+..+.+   ++.|+++|+++|+++|+|..+.. ...     
T Consensus       129 d~~~------~~~~~~~~~~~-----~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~-----  189 (421)
T d2ctza1         129 SREE------RPEEFLALTDE-----KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYL-----  189 (421)
T ss_dssp             CTTC------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTS-----
T ss_pred             cccc------CcchhccccCC-----CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEeccccccccee-----
Confidence            5331      24555555555     8999999999999999977   99999999999999999999862 111     


Q ss_pred             cccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEe
Q psy13922        211 FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE  252 (509)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~  252 (509)
                      ..++.     .+.      -|+++|.+|.++|...+=.|.++
T Consensus       190 ~~Pl~-----~Ga------DiVvhS~TKyl~GHsD~l~G~vv  220 (421)
T d2ctza1         190 LRPLA-----WGA------ALVTHSLTKWVGGHGAVIAGAIV  220 (421)
T ss_dssp             CCGGG-----GTC------SEEEEETTTTTTCSSCCCCEEEE
T ss_pred             ccccc-----cCC------cEEEEechhhccCCCCeEEEEEE
Confidence            11211     111      36688999999987777677775

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.2e-13  Score=137.42  Aligned_cols=195  Identities=13%  Similarity=0.122  Sum_probs=128.2

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD  101 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd  101 (509)
                      |+-.+|+.|++++.+.       ..+++++  ...++.+.+.+.+.+.++  .+.+.+++++|+|.+++.++..+..+++
T Consensus         7 GP~~v~~~V~~am~~~-------~~~hr~~--~f~~i~~~~~~~l~~ll~--~~~~~i~~~gsgT~a~e~~~~nl~~~g~   75 (348)
T d1iuga_           7 GPVRLHPKALEALARP-------QLHHRTE--AAREVFLKARGLLREAFR--TEGEVLILTGSGTLAMEALVKNLFAPGE   75 (348)
T ss_dssp             SSCCCCHHHHHHHHSC-------CCCTTSH--HHHHHHHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHHHHHCCTTC
T ss_pred             CCCCCCHHHHHHhcCC-------CCCCCCH--HHHHHHHHHHHHHHHHhC--CCCCEEEEeCchHHHHHHHHHhcccccc
Confidence            4556788888876422       2232322  223344444444444444  3456789999999999999999999888


Q ss_pred             CCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHH
Q psy13922        102 GKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN  179 (509)
Q Consensus       102 ~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~  179 (509)
                          +|++....+.+  +...++..|.++..+......  .++++..    ..    .+++.+++++..+.||...+   
T Consensus        76 ----~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~~----~~----~~~~~v~~~h~eTstG~~~~---  138 (348)
T d1iuga_          76 ----RVLVPVYGKFSERFYEIALEAGLVVERLDYPYGD--TPRPEDV----AK----EGYAGLLLVHSETSTGALAD---  138 (348)
T ss_dssp             ----EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTTS----CC----SSCSEEEEESEETTTTEECC---
T ss_pred             ----cceeecchHHHHHHHHHHHhcCcccccccccCCC--ccccccc----cc----cCCCeeEEEecchhhhhhcc---
Confidence                88877666544  456678889888887765432  2333332    12    27889999999999999988   


Q ss_pred             HHHHHHHHHHC--CcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCC
Q psy13922        180 IQDIIKFAHRE--KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD  257 (509)
Q Consensus       180 l~~l~~ia~~~--~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~  257 (509)
                      +++|.++|+++  +.++++|.+.+.....     ..+...         +.++++. |-.|.+.|.||  +|+++   .+
T Consensus       139 i~~i~~~~~~~~~~~l~~vDavss~g~~~-----i~~d~~---------~iD~~~~-~sqK~l~gppG--~~~v~---~s  198 (348)
T d1iuga_         139 LPALARAFKEKNPEGLVGADMVTSLLVGE-----VALEAM---------GVDAAAS-GSQKGLMCPPG--LGFVA---LS  198 (348)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECTTTBTTBC-----CCSGGG---------TCSEEEE-ESSSTTCCCSC--EEEEE---EC
T ss_pred             HHHHHHHHHhhhccceeechhhhcccccc-----cccccc---------cCCEEEe-ccccceecCCc--eeeee---ec
Confidence            77778888776  4889999988764321     121111         2236655 66998877887  46666   47


Q ss_pred             HHHHHHH
Q psy13922        258 PGVKAML  264 (509)
Q Consensus       258 ~~~~~~l  264 (509)
                      ++.++++
T Consensus       199 ~~~le~~  205 (348)
T d1iuga_         199 PRALERL  205 (348)
T ss_dssp             HHHHHTC
T ss_pred             hHHHhhh
Confidence            7766654

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.5e-14  Score=147.00  Aligned_cols=199  Identities=15%  Similarity=0.142  Sum_probs=137.7

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCC-----CCCCeEEEcCCCChhHHHHHHh
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVD-----GKKPGVLIPIPQYPLYSASLAE  123 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd-----~~~~~Vlv~~p~y~~~~~~~~~  123 (509)
                      |+......+|++.++++++        .+.+++++++++|...++.+++++++     +....+++....|......+..
T Consensus        70 Y~~~~~~~~le~~~a~l~G--------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  141 (467)
T d2v1pa1          70 FSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQI  141 (467)
T ss_dssp             SSSCHHHHHHHHHHHHHTC--------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHC--------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHH
Confidence            8888888999999999983        45788999999999999999987543     1122455556666667777888


Q ss_pred             cCCEEEEEecCCC--------CCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC-CCCCCHHHHHHHHHHHHHCCcEE
Q psy13922        124 FNMEQIGYYLDES--------KQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFL  194 (509)
Q Consensus       124 ~g~~~~~v~~~~~--------~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt-G~~~s~~~l~~l~~ia~~~~i~l  194 (509)
                      .|..+..++.+..        ....+|++.|++.++...+. .++++++.+.+|.. |.+++.+++++|.++|++||+++
T Consensus       142 ~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l  220 (467)
T d2v1pa1         142 NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN-NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV  220 (467)
T ss_dssp             TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG-GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred             cCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcc-ccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence            8999998876532        13468999999999875332 46778887777765 57889999999999999999999


Q ss_pred             EEcccCCcccc------cCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        195 FADEVYQDNVY------AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       195 I~Deay~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      |+|+++.....      ..+....++..+..++..   ..+++++ |.+|.+ |  +-..|+++.  .+..+....+
T Consensus       221 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~d~~s~-s~~K~~-~--~~~gg~i~~--~~~~~~~~~~  288 (467)
T d2v1pa1         221 VMDSARFAENAYFIKQREAEYKDWTIEQITRETYK---YADMLAM-SAKKDA-M--VPMGGLLCM--KDDSFFDVYT  288 (467)
T ss_dssp             EEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG---GCSEEEE-ESSSTT-C--CSSCEEEEE--CSGGGHHHHH
T ss_pred             EEechhhhccccccccccccccCCcccccchhhcc---cCCEEEe-cCCCCC-C--CCCceeEEe--cchhhhhHHH
Confidence            99999753210      011123344444444432   2235555 778876 3  334566652  4555444443

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1e-13  Score=141.64  Aligned_cols=214  Identities=12%  Similarity=0.111  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc----CCCC
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE----DVDG  102 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~gd~  102 (509)
                      +|.|.+++.+++....   +..+.. .. .+-...+++.+....+  ...+.+++++++++|+..+++..+.    .|. 
T Consensus        61 ~p~i~~Ai~~q~~~~~---~~~~~~-~~-~~~~~~l~~~l~~~~~--~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~-  132 (429)
T d1s0aa_          61 HPQLNAAMKSQIDAMS---HVMFGG-IT-HAPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGE-  132 (429)
T ss_dssp             CHHHHHHHHHHHHHCS---CCCCSS-EE-CHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             cHHHHHHHHHHHHhcC---CcccCC-cc-chHHHHHHHHHHhhhc--cCcceeeeccccccchhhhhhhhhheeecccc-
Confidence            6999999999998832   111111 11 1223333333333322  2356799999999999999987753    222 


Q ss_pred             CCCeEEEcCCCChhHHHHHHhc-C-------------CEEEEEecCCC-CCCCC---CHHHHHHHHHhhhccCCceEEEE
Q psy13922        103 KKPGVLIPIPQYPLYSASLAEF-N-------------MEQIGYYLDES-KQWGL---PISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus       103 ~~~~Vlv~~p~y~~~~~~~~~~-g-------------~~~~~v~~~~~-~~~~~---d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                      .+..|+....+|++....+... +             ......|.... .....   +++.+++.+....  .++.+|++
T Consensus       133 ~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iaaviv  210 (429)
T d1s0aa_         133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR--HEIAAVII  210 (429)
T ss_dssp             CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT--TTEEEEEE
T ss_pred             cccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcC--Cccceeee
Confidence            2347888888888765443322 1             11222222111 11122   3455555554432  26778777


Q ss_pred             eCC-CCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCC
Q psy13922        165 INP-GNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMG  242 (509)
Q Consensus       165 ~~p-~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G  242 (509)
                      ... ++-.|. ..|++.+++|.++|++||+++|.||++.+|...+.  ......  .++.++     +   .+++|.+ |
T Consensus       211 EPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~~~~~--~~v~PD-----i---~~~gK~l-~  277 (429)
T d1s0aa_         211 EPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACEH--AEIAPD-----I---LCLGKAL-T  277 (429)
T ss_dssp             CSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTCCCS-----E---EEECGGG-G
T ss_pred             cceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc--cccccc--ceeccc-----c---ccccccc-c
Confidence            643 466665 67899999999999999999999999999966542  222222  223333     3   3668999 4


Q ss_pred             CCCCeeEEEeeecCCHHHHHHHHH
Q psy13922        243 ECGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       243 ~~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      -.+.++|.++   .++++.+.+..
T Consensus       278 gG~~p~~av~---~~~~i~~~~~~  298 (429)
T d1s0aa_         278 GGTMTLSATL---TTREVAETISN  298 (429)
T ss_dssp             TSSSCCEEEE---ECHHHHHHHHT
T ss_pred             cccccccchh---hHHHHHhccCC
Confidence            3448999998   79999998865

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=7.1e-13  Score=132.63  Aligned_cols=169  Identities=18%  Similarity=0.141  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHH----hcCCEEEEE
Q psy13922         56 EIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLA----EFNMEQIGY  131 (509)
Q Consensus        56 ~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~----~~g~~~~~v  131 (509)
                      ..|.+.++.+.        ..+..+++++|+.|+..++ .++.+||    +|++....|.+....++    ..|.++..+
T Consensus        58 ~~lE~~la~LE--------~~~~a~~~sSGmaAi~~~l-~~l~~gd----~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~  124 (393)
T d1n8pa_          58 ENLERAVAALE--------NAQYGLAFSSGSATTATIL-QSLPQGS----HAVSIGDVYGGTHRYFTKVANAHGVETSFT  124 (393)
T ss_dssp             HHHHHHHHHHT--------TCSEEEEESCHHHHHHHHH-HTSCSSC----EEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred             HHHHHHHHHHh--------CCceEEEecCchhHHHhhh-hcccCCC----eeeeeeeecccchhhhhhhhhcccceeEEe
Confidence            45666666654        2456777888889997554 6677888    99999999998776664    447776665


Q ss_pred             ecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHH----HCCcEEEEcccCCcccccC
Q psy13922        132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH----REKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       132 ~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~----~~~i~lI~Deay~~~~~~~  207 (509)
                      +        .+.+.++++++.     ++++|++..|.||+..+.+   +++|+++|+    ++|+++|+|..|...... 
T Consensus       125 ~--------~~~~~~~~~i~~-----~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~-  187 (393)
T d1n8pa_         125 N--------DLLNDLPQLIKE-----NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-  187 (393)
T ss_dssp             S--------SHHHHHHHHSCS-----SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-
T ss_pred             e--------cchHHHHHHhhh-----hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC-
Confidence            3        145678887776     8999999999999999988   788888887    789999999999653321 


Q ss_pred             CCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEeeecCCHHHHHHHHHhhhcc
Q psy13922        208 GSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAM  271 (509)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~~~~~~~~~~~l~~~~~~~  271 (509)
                          .++     +.+.      -|+++|.+|.++|...+-.|.++.  .++.+.+.++..+...
T Consensus       188 ----~Pl-----~~GA------DiVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~l~~~~~~~  234 (393)
T d1n8pa_         188 ----NPL-----NFGA------DIVVHSATKYINGHSDVVLGVLAT--NNKPLYERLQFLQNAI  234 (393)
T ss_dssp             ----CGG-----GGTC------SEEEEETTTTTTCSSCCCCEEEEE--SCHHHHHHHHHHHHHH
T ss_pred             ----Cch-----hhCC------CEEEEccccccCCCCccccceeee--cchhHHHHHHHHHhhc
Confidence                111     1111      366889999999888888888753  6778888887766533

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.55  E-value=3e-13  Score=138.38  Aligned_cols=212  Identities=9%  Similarity=0.017  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCe
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG  106 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~  106 (509)
                      +|.|.+++.+++++... ....+.     .+.+..+++.|.+...  -..+.+++++++++|++.+++..+....  |+.
T Consensus        59 ~p~v~~ai~~q~~~~~~-~~~~~~-----~~~~~~la~~L~~~~~--~~~~~v~f~~sGseA~e~Alk~Ar~~t~--r~~  128 (431)
T d1zoda1          59 HPEIVSVIGEYAGKLDH-LFSEML-----SRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTG--KYE  128 (431)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCTTCC-----CHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHT--CCE
T ss_pred             CHHHHHHHHHHHhhccc-cccccc-----cHHHHHHHHHHHHhCC--cccceeeecccccchHHHHHHHHHHhcC--Ccc
Confidence            69999999999998321 111122     2233445555544322  1346899999999999999998755432  458


Q ss_pred             EEEcCCCChhHHHHHHhcC------------CEEEEEecCCCC-------CCCCCHHHHHH---HHHhhhccCCceEEEE
Q psy13922        107 VLIPIPQYPLYSASLAEFN------------MEQIGYYLDESK-------QWGLPISELER---SITEARKHCNPRAIVI  164 (509)
Q Consensus       107 Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~-------~~~~d~~~L~~---~i~~~~~~~~~~~ivi  164 (509)
                      |+...-.|++........+            .....++.....       ....+.+.++.   .+... ...++.+|++
T Consensus       129 i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~  207 (431)
T d1zoda1         129 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ-SSGNLAAFIA  207 (431)
T ss_dssp             EEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH-CCSCEEEEEE
T ss_pred             eeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHh-ccccccceee
Confidence            9888889988655443321            112222211110       00112333333   33322 1136778887


Q ss_pred             eCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCC
Q psy13922        165 INPGNPTGQ-VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGE  243 (509)
Q Consensus       165 ~~p~NPtG~-~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~  243 (509)
                      .....-.|. .+|++.+++|.++|++||+++|.||++.+|...+  .+.....  .++.++        +-+++|.++  
T Consensus       208 EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG--~~~~~~~--~gv~PD--------i~~~gK~l~--  273 (431)
T d1zoda1         208 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG--TMFACQR--DGVTPD--------ILTLSKTLG--  273 (431)
T ss_dssp             CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS--SSSTHHH--HTCCCS--------EEEECHHHH--
T ss_pred             ccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccc--ccccccc--CCCCcc--------hhccccccc--
Confidence            544444555 6789999999999999999999999999987664  2333332  233333        336699994  


Q ss_pred             CCCeeEEEeeecCCHHHHHHHHH
Q psy13922        244 CGLRGGYSEVINLDPGVKAMLHK  266 (509)
Q Consensus       244 ~Glr~G~v~~~~~~~~~~~~l~~  266 (509)
                      .|+.++.++   ..+++++.+..
T Consensus       274 gG~p~~av~---~~~~~~~~~~~  293 (431)
T d1zoda1         274 AGLPLAAIV---TSAAIEERAHE  293 (431)
T ss_dssp             TTSSCEEEE---ECHHHHHHHHH
T ss_pred             cccccceee---eeecchhhhhc
Confidence            899998887   67877776654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.54  E-value=2.9e-13  Score=135.70  Aligned_cols=191  Identities=12%  Similarity=0.116  Sum_probs=137.7

Q ss_pred             HHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHh-hcCCCCCCCeEEE
Q psy13922         31 KQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLL-IEDVDGKKPGVLI  109 (509)
Q Consensus        31 ~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv  109 (509)
                      ++++.+.+++   +++.+.++.  ...+.+.++++++        ...+++++++|.|+.++++++ .++||    .|++
T Consensus         4 ~~~~~~~l~~---~~~~~~G~~--~~~fE~~~~~~~~--------~~~~~~~~SgT~Al~lal~~l~~~~gd----eVi~   66 (374)
T d1o69a_           4 LKYIEEVFKS---NYIAPLGEF--VNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDD----IVLA   66 (374)
T ss_dssp             HHHHHHHHHH---TTTSCTTHH--HHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTC----EEEE
T ss_pred             HHHHHHHHhc---CCcCCCCHH--HHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCcC----EEEe
Confidence            6788899998   666545654  3889999999983        347899999999999999998 66777    9999


Q ss_pred             cCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHH--HHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHH
Q psy13922        110 PIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELE--RSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFA  187 (509)
Q Consensus       110 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~--~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia  187 (509)
                      |..+|.....++..+|++++.+++++.. +..+.+..+  ..+..     ++++|++.+.   .|...   ++++|.++|
T Consensus        67 p~~t~~a~~~~~~~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~~~-----~~~aii~~~~---~G~~~---d~~~i~~~~  134 (374)
T d1o69a_          67 SSFTFIASVAPICYLKAKPVFIDCDETY-NIDVDLLKLAIKECEK-----KPKALILTHL---YGNAA---KMDEIVEIC  134 (374)
T ss_dssp             ESSSCGGGTHHHHHTTCEEEEECBCTTS-SBCHHHHHHHHHHCSS-----CCCEEEEECG---GGCCC---CHHHHHHHH
T ss_pred             CCcchHhhHHHHhhccceeEeccccccc-ccccccccccchhccc-----cccccccccc---ccchh---hhHHHHHHh
Confidence            9999999999999999999999988542 223333332  22222     6888887644   34443   499999999


Q ss_pred             HHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEec--ccccCCCCCCeeEEEeeecCCHHHHHHHH
Q psy13922        188 HREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSC--SKGYMGECGLRGGYSEVINLDPGVKAMLH  265 (509)
Q Consensus       188 ~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~G~~Glr~G~v~~~~~~~~~~~~l~  265 (509)
                      +++|++||+|.+++......+ .  ..       +.   .. -+.+.||  +|.++  +| ..|.+++  .++++.++++
T Consensus       135 ~~~~i~vIED~a~a~g~~~~~-~--~~-------G~---~g-d~~~fSf~~~K~l~--tg-eGG~i~t--nn~~~~~~~~  195 (374)
T d1o69a_         135 KENDIVLIEDAAEALGSFYKN-K--AL-------GT---FG-EFGVYSYNGNKIIT--TS-GGGMLIG--KNKEKIEKAR  195 (374)
T ss_dssp             HHTTCEEEEECTTCTTCEETT-E--ET-------TS---SS-SEEEEECCTTSSSC--CS-SCEEEEE--SCHHHHHHHH
T ss_pred             hccCcchhhhhhhhhcceECC-e--ec-------CC---CC-ceEEEeccCccccc--cc-cceeehh--hhHHHHHhhc
Confidence            999999999999987554322 1  11       10   01 2334466  59884  44 3566653  8999999988


Q ss_pred             Hhhh
Q psy13922        266 KSIS  269 (509)
Q Consensus       266 ~~~~  269 (509)
                      .++.
T Consensus       196 ~~~~  199 (374)
T d1o69a_         196 FYST  199 (374)
T ss_dssp             HHTB
T ss_pred             cccc
Confidence            7755

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.51  E-value=4e-13  Score=138.59  Aligned_cols=141  Identities=12%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             CCCCcchHHHHHHHHHHHhhhcCCCCCCCcE-EEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhc-CC
Q psy13922         49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDV-ILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF-NM  126 (509)
Q Consensus        49 Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i-~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~-g~  126 (509)
                      +.+..-..++++.+|++++        .++. ++++|++.++..++.+++++||    .||++..+|.+....+..+ +.
T Consensus        62 ~~~~~~i~eae~~~A~~~g--------a~~a~f~~~Gtt~~n~a~i~a~~~~gd----~Vi~~~~~H~Sv~~~~~~l~~~  129 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALVSNGD----LVLFDRNNHKSVYNSALAMAGG  129 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHTTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhC--------CCeEEEECCchHHHHHHHHHHhcCCCC----eEEecccchHHHHHHHHHHhcC
Confidence            4444456788999999883        3444 5556777778788999999999    9999999999988766544 33


Q ss_pred             EE--EEEecCCCCC-C-----CCCHHHHHHHHHhh----hccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEE
Q psy13922        127 EQ--IGYYLDESKQ-W-----GLPISELERSITEA----RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL  194 (509)
Q Consensus       127 ~~--~~v~~~~~~~-~-----~~d~~~L~~~i~~~----~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~l  194 (509)
                      .+  ...+.++.+. .     .++.+.++..+...    ....++..+++...+|-.|.+.+   +++|+++|+++|++|
T Consensus       130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l  206 (462)
T d1c4ka2         130 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYI  206 (462)
T ss_dssp             EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred             CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEE
Confidence            33  3333443311 1     12333333322110    01124555555555667899977   899999999999999


Q ss_pred             EEcccCCccc
Q psy13922        195 FADEVYQDNV  204 (509)
Q Consensus       195 I~Deay~~~~  204 (509)
                      ++|++|....
T Consensus       207 ~vD~A~~~~~  216 (462)
T d1c4ka2         207 EFDSAWVGYE  216 (462)
T ss_dssp             EEECTTCCGG
T ss_pred             EEechhhccc
Confidence            9999997643

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.49  E-value=3.8e-12  Score=125.70  Aligned_cols=298  Identities=14%  Similarity=0.145  Sum_probs=188.7

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCC--Ccc-cCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQ--SVG-SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~--~~~-~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ..+..++.|++++...+...-..  ... .|+...-..++.+...+...+.++  ...-+|-..+|+ .|...++.+|++
T Consensus        31 SEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVqp~SGs-~An~av~~all~  107 (405)
T d1kl1a_          31 SENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHSGA-QANMAVYFTVLE  107 (405)
T ss_dssp             TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECCCSSHH-HHHHHHHHHHCC
T ss_pred             cCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceeeccCch-HHHHHHHHHhcC
Confidence            56667888888887766551110  001 144344434444444444444444  223345555555 677789999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHH-----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSA-----SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |||    +|+..++...++..     .......+.+.++.+++ ++.+|.+++++.++..    +|++|++..-.+|-  
T Consensus       108 pGD----~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~----kPklIi~G~S~y~r--  176 (405)
T d1kl1a_         108 HGD----TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH----RPKLIVAAASAYPR--  176 (405)
T ss_dssp             TTC----EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH----CCSEEEECCSSCCS--
T ss_pred             CCC----EEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhh----CcceEEeccccccc--
Confidence            999    99998865554332     12233578888888866 4689999999999988    99999986545543  


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      .++   ++++.++|++.|.++++|-+|.-....++. +++...          +.++++. |.+|++   +|=|.|.+. 
T Consensus       177 ~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~~P~~----------~aDvvt~-tThKtl---rGPrgg~I~-  237 (405)
T d1kl1a_         177 IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HPNPVP----------YAHFVTT-TTHKTL---RGPRGGMIL-  237 (405)
T ss_dssp             CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCSTT----------TCSEEEE-ESSSTT---CCCSCEEEE-
T ss_pred             ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhh-cCChhh----------hhhheec-cccccc---cCCCCceEE-
Confidence            333   889999999999999999998543332222 222111          2336644 889998   466889887 


Q ss_pred             ecCCHHHHHHHHHhhhccc--CcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        254 INLDPGVKAMLHKSISAML--CPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                        .+.++.+++.+...+..  ++...                                  ..++.+.++.         +
T Consensus       238 --~~~~~~~~i~~avfPg~qggp~~~----------------------------------~iAa~Aval~---------E  272 (405)
T d1kl1a_         238 --CQEQFAKQIDKAIFPGIQGGPLMH----------------------------------VIAAKAVAFG---------E  272 (405)
T ss_dssp             --ECHHHHHHHHHHHTTTTCSSCCHH----------------------------------HHHHHHHHHH---------H
T ss_pred             --ecchhHHHHHhhhCcccccCcchh----------------------------------HHHHHHHHHH---------H
Confidence              57888888876554322  22222                                  2223232221         1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      ....+.+...+...++.+.|.+.|.+. |+.+.. ...+-.+|++++          ..|+.  -..+..+|++.||.+.
T Consensus       273 a~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~----------~~~~~--g~~ae~~Le~agI~~N  339 (405)
T d1kl1a_         273 ALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLR----------PQQLT--GKTAEKVLDEVGITVN  339 (405)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG----------GGTCC--HHHHHHHHHHHTEECE
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeecccc----------ccCCc--HHHHHHHHHHcCeEEc
Confidence            122335667778888888888998887 998873 233446676764          12332  2336789999999876

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1e-11  Score=123.16  Aligned_cols=300  Identities=16%  Similarity=0.109  Sum_probs=184.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE   98 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~   98 (509)
                      ..+..++.|++++...+...-...   -.-|+...-..++.....+...+.+|  ....+|-. .+++.|...++.++++
T Consensus        34 SEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVqp-~SGs~AN~av~~All~  110 (416)
T d1dfoa_          34 SENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQP-HSGSQANFAVYTALLE  110 (416)
T ss_dssp             TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCC-SSHHHHHHHHHHHHCC
T ss_pred             CcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceeec-ccCccHHHHHHHHhcC
Confidence            566678888888876666511110   01134333333343333344444444  22234444 4455688899999999


Q ss_pred             CCCCCCCeEEEcCCCChhHHHH-----HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCC
Q psy13922         99 DVDGKKPGVLIPIPQYPLYSAS-----LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ  173 (509)
Q Consensus        99 ~gd~~~~~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~  173 (509)
                      |||    +|+.....+.++...     +.....+.+.++.++.  ..+|.+++++..+..    +|++|++..-.+|  .
T Consensus       111 pGD----~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~--~~IDyd~l~~~a~~~----kPklIi~G~S~y~--r  178 (416)
T d1dfoa_         111 PGD----TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDAT--GHIDYADLEKQAKEH----KPKMIIGGFSAYS--G  178 (416)
T ss_dssp             TTC----EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSS--SSBCHHHHHHHHHHH----CCSEEEEECSSCC--S
T ss_pred             CCC----eeeeccccccccccccccccccCceEEEEecccCCc--cCccHHHHHHHHHHh----ccceEEecccccc--c
Confidence            999    999998877765432     2233567888887753  369999999999987    9999998644444  3


Q ss_pred             CCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEEee
Q psy13922        174 VLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV  253 (509)
Q Consensus       174 ~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v~~  253 (509)
                      .++   ++++.++|++.|.++++|.+|......++ .+++..          +..+++ ..|.+|++   .|-|.|.+.+
T Consensus       179 ~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g-~~~sP~----------~~aDvv-t~tThKtl---rGPrggiI~~  240 (416)
T d1dfoa_         179 VVD---WAKMREIADSIGAYLFVDMAHVAGLVAAG-VYPNPV----------PHAHVV-TTTTHKTL---AGPRGGLILA  240 (416)
T ss_dssp             CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHT-SSCCCT----------TTSSEE-EEESSSTT---CCCSCEEEEE
T ss_pred             ccC---HHHHHHHHHhcCceEEcchhhhhcceecc-ccCCcc----------ccccee-eeehhhcc---cCCCceEEEe
Confidence            444   88999999999999999999865333222 122211          123355 55889998   5668899874


Q ss_pred             ecCCHHHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCcccccchhhcccCCCCCCCCchH
Q psy13922        254 INLDPGVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYE  331 (509)
Q Consensus       254 ~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  331 (509)
                      -...+++.+++.+.....  +++...                                  ..++.+.++.         +
T Consensus       241 ~~~~~~~~~~i~~avfPg~qggp~~~----------------------------------~iaa~Aval~---------E  277 (416)
T d1dfoa_         241 KGGSEELYKKLNSAVFPGGQGGPLMH----------------------------------VIAGKAVALK---------E  277 (416)
T ss_dssp             SSCCHHHHHHHHHHHTTTTCSSCCHH----------------------------------HHHHHHHHHH---------H
T ss_pred             ccchHhHHHHHHhhhCcccccCccHH----------------------------------HHHHHHHHHH---------H
Confidence            112467777776654422  222222                                  1222222211         0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeecc-CCceeEEeecCCCCHHHHHHHhhcCCCCcHHHHHHHHhhcCeEEe
Q psy13922        332 QFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP-VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  410 (509)
                      -...+.....+.+.++.+.|.+.|.+. |+++.. ...+-.++++++ +         .|+  +-..+...|++.||.+.
T Consensus       278 a~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~-~---------~~~--~G~~a~~~Le~~gI~~N  344 (416)
T d1dfoa_         278 AMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLV-D---------KNL--TGKEADAALGRANITVN  344 (416)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG-G---------GTC--CHHHHHHHHHHTTEECE
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEec-c---------cCC--CHHHHHHHHHHcCeEEe
Confidence            011124556677778888888888888 999873 333445566664 1         233  22337889999999876

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=1.5e-12  Score=134.06  Aligned_cols=177  Identities=10%  Similarity=-0.018  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHHhcccCCCcccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhc--------
Q psy13922         27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIE--------   98 (509)
Q Consensus        27 p~~v~~a~~~~l~~~~~~~~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------   98 (509)
                      +|.|.+++.+++..........+.. .....+.+.+++.+....+  -.-+.+++++++++|++.+++....        
T Consensus        71 ~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~  147 (461)
T d1ohwa_          71 HPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERG  147 (461)
T ss_dssp             CHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhc--cCcceeeeecchhhhhHHHHHHHHHHhhhcccC
Confidence            6789999988776521100110111 1113356667776654322  2345899999999999999987632        


Q ss_pred             -----------------CCCCCCCeEEEcCCCChhHHHHHHhc-CC-------------EEEEEecCCCC-CC-------
Q psy13922         99 -----------------DVDGKKPGVLIPIPQYPLYSASLAEF-NM-------------EQIGYYLDESK-QW-------  139 (509)
Q Consensus        99 -----------------~gd~~~~~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~-~~-------  139 (509)
                                       ++. .+..|+...-+|++....+... |-             ...+.+..... .+       
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~-~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (461)
T d1ohwa_         148 QSAFSKEELETCMINQAPGC-PDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQ  226 (461)
T ss_dssp             TCCCCHHHHHHHHTTCTTTS-CCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHH
T ss_pred             cccccchhhhhhhhccccCC-CCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccch
Confidence                             121 2347898999999865444332 21             11111100000 00       


Q ss_pred             --CCCHHHHHHHHHhhhcc-CCceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccC
Q psy13922        140 --GLPISELERSITEARKH-CNPRAIVIINPGNPTG-QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE  207 (509)
Q Consensus       140 --~~d~~~L~~~i~~~~~~-~~~~~ivi~~p~NPtG-~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~  207 (509)
                        ..+.+.+++.+...... .++.+|++...+...| ...+++.+++|.++|++||+++|.||++..|..+|
T Consensus       227 ~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG  298 (461)
T d1ohwa_         227 EEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG  298 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTS
T ss_pred             hhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccc
Confidence              01245566665443222 3677888865565566 47889999999999999999999999999987665

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.34  E-value=3e-10  Score=114.19  Aligned_cols=302  Identities=12%  Similarity=0.077  Sum_probs=186.3

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCC---cccCCCCcchHHHHHHHHHHHhhhcCCCCCCCcEE-EeCCHHHHHHHHHHHhh
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQS---VGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI-LSAGASDGIKSVLKLLI   97 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~---~~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~   97 (509)
                      ..+..++.|++++-..+...-...   ..-|+...-..++.....+...+.++.+.....+= =..+++.|...++.+|+
T Consensus        39 SEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all  118 (470)
T d1rv3a_          39 SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV  118 (470)
T ss_dssp             TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT
T ss_pred             CCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc
Confidence            566678888888877776411000   11145455545555555555555555332222222 23455678889999999


Q ss_pred             cCCCCCCCeEEEcCCCChhHHHH----------HHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCC
Q psy13922         98 EDVDGKKPGVLIPIPQYPLYSAS----------LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINP  167 (509)
Q Consensus        98 ~~gd~~~~~Vlv~~p~y~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p  167 (509)
                      +|||    +|+.......++...          +.....+.+.++++++ +..+|.+++++..+..    +|++|++..-
T Consensus       119 ~pgD----~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~----kPklIi~G~S  189 (470)
T d1rv3a_         119 EPHG----RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF----HPKLIIAGTS  189 (470)
T ss_dssp             CTTC----EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH----CCSEEEECCS
T ss_pred             CCCC----eEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhh----CcceEeechh
Confidence            9999    999887654443211          1222467888888876 3579999999999987    9999998655


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCe
Q psy13922        168 GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLR  247 (509)
Q Consensus       168 ~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr  247 (509)
                      .+|  ..++   ++++.++|.+.|.+|++|-+|.-....++ .+++...          ..+++ ..|.+|++   +|=|
T Consensus       190 ~y~--r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g-~~~sPl~----------~aDvv-t~tTHKtl---rGPr  249 (470)
T d1rv3a_         190 CYS--RNLD---YGRLRKIADENGAYLMADMAHISGLVVAG-VVPSPFE----------HCHVV-TTTTHKTL---RGCR  249 (470)
T ss_dssp             SCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHT-SSCCGGG----------TCSEE-EEESSGGG---CCCS
T ss_pred             hcc--ccCC---HHHHHHHHhccCCeEEecchhhhhhcccc-ccCChhh----------eeeee-eeehhhhc---cCCc
Confidence            555  2334   88899999999999999999854333222 2222211          22366 45889998   5668


Q ss_pred             eEEEeeecCCH--------------HHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccCccc
Q psy13922        248 GGYSEVINLDP--------------GVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSV  311 (509)
Q Consensus       248 ~G~v~~~~~~~--------------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (509)
                      .|.+.+  ...              ++.+++.+...+.  +++...                                  
T Consensus       250 gGiI~~--~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~----------------------------------  293 (470)
T d1rv3a_         250 AGMIFY--RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNH----------------------------------  293 (470)
T ss_dssp             CEEEEE--ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHH----------------------------------
T ss_pred             ceEEEE--ccccccccccccchhHHHHHHHHhhhcCccccccchhh----------------------------------
Confidence            898873  322              4667776554322  222222                                  


Q ss_pred             ccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHhhcC
Q psy13922        312 GQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAKAEG  390 (509)
Q Consensus       312 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~g  390 (509)
                      ..++++.++.         +-...+.....+.+..+.+.|.+.|.+. |+++. ....+-.++++++          ..|
T Consensus       294 ~IAa~Ava~~---------ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~----------~~g  353 (470)
T d1rv3a_         294 AIAGVAVALK---------QAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLR----------SKG  353 (470)
T ss_dssp             HHHHHHHHHH---------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGG----------GGT
T ss_pred             HHHHHHHHHH---------HhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeec----------ccC
Confidence            2222222221         1111224566677777888888888887 88886 3344455566664          124


Q ss_pred             CCCcHHHHHHHHhhcCeEEe
Q psy13922        391 KCPSVLYAFELLERTGICIV  410 (509)
Q Consensus       391 ~~~~~~~~~~ll~~~gI~v~  410 (509)
                      ++..  .+...|++.||.+.
T Consensus       354 ~~g~--~ae~~Le~~gI~~N  371 (470)
T d1rv3a_         354 TDGG--RAEKVLEACSIACN  371 (470)
T ss_dssp             CCHH--HHHHHHHHTTEECE
T ss_pred             CcHH--HHHHHHHHcCcEEC
Confidence            4322  26889999999876

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.28  E-value=3e-10  Score=113.80  Aligned_cols=300  Identities=13%  Similarity=0.055  Sum_probs=169.1

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCC--Cc-ccCCCCcchHHHHHHHHHHHhhhcCCCCCCC----cEEEeCCHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQ--SV-GSYTDSPGIEIIRRHVAQYISRRDGQPADWQ----DVILSAGASDGIKSVLK   94 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~--~~-~~Y~~~~g~~~lr~~va~~l~~~~g~~~~~~----~i~~t~G~~~al~~~~~   94 (509)
                      ..+..++.|++++-..+...-..  .. .-|+...-..++.....+...+.++  ++..    ||-.-+ ++.|...++.
T Consensus        35 SEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--~~~a~w~vNVqp~S-Gs~An~av~~  111 (463)
T d2a7va1          35 SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQPYS-GSPANLAVYT  111 (463)
T ss_dssp             TCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT--CCTTTEEEECCCSS-HHHHHHHHHH
T ss_pred             cCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCchhccCCccccc-cHHHHHHHHH
Confidence            56667888888886666541100  00 0123232233444433344444444  2333    344444 4567889999


Q ss_pred             HhhcCCCCCCCeEEEcCCCChhHHHHH--------HhcC--CEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEE
Q psy13922         95 LLIEDVDGKKPGVLIPIPQYPLYSASL--------AEFN--MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI  164 (509)
Q Consensus        95 ~l~~~gd~~~~~Vlv~~p~y~~~~~~~--------~~~g--~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi  164 (509)
                      +|++|||    +|+...+...++...-        ...|  .+...+..+++ +..+|.+++++..++.    +|++|++
T Consensus       112 all~pgD----~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~----kPklIi~  182 (463)
T d2a7va1         112 ALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF----RPRLIIA  182 (463)
T ss_dssp             HHCCSCE----ECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH----CCSEEEE
T ss_pred             HHcCCCc----eEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhc----CCceEEe
Confidence            9999999    9998877666553211        1122  34555555544 3579999999999988    9999998


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC
Q psy13922        165 INPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC  244 (509)
Q Consensus       165 ~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~  244 (509)
                      ..-.+|-  .++   ++++.++|++.|.++++|-+|.-....++ .+++...          ..++++ .|.+|++   +
T Consensus       183 G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g-~~~sP~~----------~aDvvt-~tTHKTl---r  242 (463)
T d2a7va1         183 GTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIPSPFK----------HADIVT-TTTHKTL---R  242 (463)
T ss_dssp             CCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTT-SSCCGGG----------TCSEEE-EESSGGG---C
T ss_pred             ccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhh-hhcChhh----------hhhhhh-chhhhhh---c
Confidence            6555553  333   88999999999999999999854433333 2222221          223664 4889998   5


Q ss_pred             CCeeEEEeeecCCH--------------HHHHHHHHhhhcc--cCcchhhhhccccccCCCCCchhHHHHHHHhhhcccC
Q psy13922        245 GLRGGYSEVINLDP--------------GVKAMLHKSISAM--LCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRG  308 (509)
Q Consensus       245 Glr~G~v~~~~~~~--------------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (509)
                      |=|.|.+.+  .+.              ++.+++.+...+.  +++...                               
T Consensus       243 GPrgGiIl~--~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h-------------------------------  289 (463)
T d2a7va1         243 GARSGLIFY--RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNH-------------------------------  289 (463)
T ss_dssp             SCSCEEEEE--ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHH-------------------------------
T ss_pred             CCCceEEEE--cccccccccccCccchhHHHHHhhhhcCcccchhhhhh-------------------------------
Confidence            668898873  331              5666776544322  122222                               


Q ss_pred             cccccchhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeec-cCCceeEEeecCCCCHHHHHHHh
Q psy13922        309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN-PVQGAMYAFPQMKLPAKAIAKAK  387 (509)
Q Consensus       309 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~  387 (509)
                         ..++++.++.         +....+.+...+...++.+.|.+.|.+. |+++. ....+-.++++++ +        
T Consensus       290 ---~iAa~Ava~~---------ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~-~--------  347 (463)
T d2a7va1         290 ---AIAAVAVALK---------QACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLR-P--------  347 (463)
T ss_dssp             ---HHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECT-T--------
T ss_pred             ---hHHHHHHHHH---------HhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeecc-c--------
Confidence               2222222221         1111235566777778888888888888 88886 3444556677775 1        


Q ss_pred             hcCCCCcHHHHHHHHhhcCeEEec
Q psy13922        388 AEGKCPSVLYAFELLERTGICIVP  411 (509)
Q Consensus       388 ~~g~~~~~~~~~~ll~~~gI~v~p  411 (509)
                       .|+  +-..+...|++.||.+.-
T Consensus       348 -~~~--~G~~ae~~Le~~gI~~Nk  368 (463)
T d2a7va1         348 -KGL--DGARAERVLELVSITANK  368 (463)
T ss_dssp             -TTC--CHHHHHHHHHHTTEECEE
T ss_pred             -cCC--CHHHHHHHHHhccCccCC
Confidence             122  223378999999998863

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.25  E-value=2.8e-11  Score=120.24  Aligned_cols=194  Identities=11%  Similarity=0.074  Sum_probs=116.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhcccCCCcc--cCC-CCcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHH-HHHHHHh
Q psy13922         21 FDDPRFPDDVKQRAQAVLDGCRGQSVG--SYT-DSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGI-KSVLKLL   96 (509)
Q Consensus        21 ~~~~~~p~~v~~a~~~~l~~~~~~~~~--~Y~-~~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al-~~~~~~l   96 (509)
                      .|+..+|+.|++++.+.+........+  ..+ -+.-..++.+.+.+.+.+.++.+ +..+|++++|++.+. ..+...+
T Consensus         9 pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ea~~~~l   87 (361)
T d2c0ra1           9 AGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNF   87 (361)
T ss_dssp             SSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhcc
Confidence            366778999999998887663211111  011 02223445555555555555532 233788877775544 5555566


Q ss_pred             hcCCCCCCCeEEEcCCCCh--hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYP--LYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQV  174 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~  174 (509)
                      ..+++    .+++..-...  .+...++..|..+..+..+...  .++++.+++.+..     .. ...   .+|.||..
T Consensus        88 ~~~~~----~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~-~~~---v~~~tg~~  152 (361)
T d2c0ra1          88 LKEGQ----TANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQ-----DN-AAY---LHLTSNET  152 (361)
T ss_dssp             CCTTC----EEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCC-----TT-EEE---EEEESEET
T ss_pred             ccCCC----ceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhccc-----Cc-ceE---EEEecccc
Confidence            66666    6665443222  3556778889998888776543  4566666655443     22 222   35678888


Q ss_pred             CCHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCCCCeeEEE
Q psy13922        175 LTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS  251 (509)
Q Consensus       175 ~s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~Glr~G~v  251 (509)
                      .+   +.++..+|+++|+++++|.+.+....     ...+..           .++.+ .|.+|.+ |++|.-.+++
T Consensus       153 ~~---~~~i~~~~~~~~al~~vDavss~g~~-----~id~~~-----------~di~~-~s~~k~~-~~~~~~~~~~  208 (361)
T d2c0ra1         153 IE---GAQFKAFPDTGSVPLIGDMSSDILSR-----PFDLNQ-----------FGLVY-AGAQKNL-GPSGVTVVIV  208 (361)
T ss_dssp             TT---TEECSSCCCCTTSCEEEECTTTTTSS-----CCCGGG-----------CSEEE-EETTTTT-CCSSCEEEEE
T ss_pred             ee---cceEEEeeccCCceEEEEeecccccc-----cccccc-----------ceeEE-Eeccccc-ccccCcEEEE
Confidence            77   55677789999999999999976332     222221           12444 4779999 6777544443

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2.6e-10  Score=112.31  Aligned_cols=161  Identities=14%  Similarity=0.057  Sum_probs=97.8

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCcccC--C-CC----cchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGSY--T-DS----PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK   94 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~Y--~-~~----~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~   94 (509)
                      |+..+|+.|++++.+.+.+......+-|  + -.    .-+.+.|+.+++++    +.+ +...|++++|++++...+..
T Consensus         8 GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~----~~~-~~~~v~~~~gs~t~~~~a~~   82 (360)
T d1bjna_           8 GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLL----NVP-SNYKVLFCHGGGRGQFAAVP   82 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----CCC-CCCEEEEECCchHHHHhhhh
Confidence            6667899999999998876321111101  1 01    12356666666666    321 23478888888777666655


Q ss_pred             Hh-hcCCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCC
Q psy13922         95 LL-IEDVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT  171 (509)
Q Consensus        95 ~l-~~~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPt  171 (509)
                      .. ..+++    .+++..-.+..  +....+..|..++.+......  ..+.+.++..+..     +++++.+...+|-|
T Consensus        83 ~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~v~v~~~~~~t  151 (360)
T d1bjna_          83 LNILGDKT----TADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQL-----SDNAAYMHYCPNET  151 (360)
T ss_dssp             HHHCTTCC----EEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCC-----CSSCSCEEECSEET
T ss_pred             hccccccc----ccceecccchhhhhHHHHhhcCccceeeccccCC--Ccchhhhhhhhcc-----CCceeEEEeccccc
Confidence            44 44444    66666544443  345556667766666544332  3344455444444     67888888888999


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEcccCCcc
Q psy13922        172 GQVLTKENIQDIIKFAHREKLFLFADEVYQDN  203 (509)
Q Consensus       172 G~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~  203 (509)
                      |+..+..   .+  .++.+++.+++|.+.+..
T Consensus       152 ~~~~~~~---~i--~~~~~~~~v~vDa~~~~~  178 (360)
T d1bjna_         152 IDGIAID---ET--PDFGADVVVAADFSSTIL  178 (360)
T ss_dssp             TTTEECC---CC--CCCCTTCCEEEECTTTTT
T ss_pred             ccCcccc---ce--ecccccceeeeeeecccc
Confidence            9876633   22  346789999999888764

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.96  E-value=6.1e-09  Score=102.55  Aligned_cols=159  Identities=9%  Similarity=-0.027  Sum_probs=95.0

Q ss_pred             CCCCCCHHHHHHHHHHHhcccCCCccc----CCC---CcchHHHHHHHHHHHhhhcCCCCCCC-cEEEeCCHHHHHHHHH
Q psy13922         22 DDPRFPDDVKQRAQAVLDGCRGQSVGS----YTD---SPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVL   93 (509)
Q Consensus        22 ~~~~~p~~v~~a~~~~l~~~~~~~~~~----Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~   93 (509)
                      |+..+|+.|++++.+.+.+......+-    ...   ..-+.+.|+.+++++    +  .+.+ .|++++|++++...+.
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~----~--~~~~~~i~~~~gt~~~~~~~~   83 (360)
T d1w23a_          10 GPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----Q--IPNDYQILFLQGGASLQFTML   83 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----T--CCTTEEEEEESSHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----C--CCCCCEEEEeCCcHHHHHHHH
Confidence            667789999999988776532111110    011   112345667777776    3  3333 6888899887777666


Q ss_pred             HHhhc-CCCCCCCeEEEcCCCChh--HHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCC
Q psy13922         94 KLLIE-DVDGKKPGVLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNP  170 (509)
Q Consensus        94 ~~l~~-~gd~~~~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NP  170 (509)
                      ..... .++    .+++....+.+  +...++..+...+.+......  ..+++.++....      .....   ...|.
T Consensus        84 ~~~~~~~~~----~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~---~~~~~  148 (360)
T d1w23a_          84 PMNLLTKGT----IGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQL------NENDA---YLHIT  148 (360)
T ss_dssp             HHHHCCTTC----EEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCC------CTTEE---EEEEE
T ss_pred             HhhhcccCc----ccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhccc------ccccc---eeEec
Confidence            55544 444    66666544433  445556667666665544322  122333322222      22232   33566


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEcccCCccc
Q psy13922        171 TGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV  204 (509)
Q Consensus       171 tG~~~s~~~l~~l~~ia~~~~i~lI~Deay~~~~  204 (509)
                      ||...+   +.+|.++|+++|+++|+|.+.+...
T Consensus       149 tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~  179 (360)
T d1w23a_         149 SNNTIY---GTQYQNFPEINHAPLIADMSSDILS  179 (360)
T ss_dssp             SEETTT---TEECSSCCCCCSSCEEEECTTTTTS
T ss_pred             CCcccc---ceeeeeccccceeeEEeeccccccc
Confidence            788877   6778889999999999999998744

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=3.3e-06  Score=84.52  Aligned_cols=127  Identities=24%  Similarity=0.282  Sum_probs=86.3

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHH----HHhcCCE
Q psy13922         52 SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSAS----LAEFNME  127 (509)
Q Consensus        52 ~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~----~~~~g~~  127 (509)
                      ++|..++--.+..++.+-.|.+  .-+.-.-.|++.....++.+.....   +++++++.-+++.+...    ++..|.+
T Consensus       103 sQG~Lq~l~e~q~~l~eltGmd--~~n~s~~~ga~a~~~~~~~~~~~~~---~~~~~v~~~~~p~~~~v~~t~a~~~g~~  177 (437)
T d1wyua1         103 SQGVLQATFEYQTMIAELAGLE--IANASMYDGATALAEGVLLALRETG---RMGVLVSQGVHPEYRAVLRAYLEAVGAK  177 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSS--EECSCBSSHHHHHHHHHHHHHHHHT---CCEEEEETTSCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC--ccccCchHHHHHHHHHHHHHHhhhc---ccccccccccChHHhhhhhhhcccceee
Confidence            4576666666666666655633  3344445677766666665554332   34899998888776544    4567999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccc
Q psy13922        128 QIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV  199 (509)
Q Consensus       128 ~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~s~~~l~~l~~ia~~~~i~lI~Dea  199 (509)
                      ++.++.++.   ..+.++    +.+     ++.+|++.+||. .|.+   +++++|++++++.|.+++.|..
T Consensus       178 vv~v~~~~~---~~~~~~----~~~-----~~Aavmi~~Pnt-~G~~---ed~~~i~~~~h~~G~l~~~~ad  233 (437)
T d1wyua1         178 LLTLPLEGG---RTPLPE----VGE-----EVGAVVVQNPNF-LGAL---EDLGPFAEAAHGAGALFVAVAD  233 (437)
T ss_dssp             EEEECCBTT---BCCCCC----CCT-----TEEEEEEESSCT-TSBC---CCHHHHHHHHHHTTCEEEEECC
T ss_pred             EEeeecccc---cchhhh----hcc-----ceeEEEEccccc-cccc---cchHHHHHHhhhccceEEeeec
Confidence            999998754   223222    233     799999999966 6887   4589999999999998887743

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=6.5e-06  Score=83.24  Aligned_cols=207  Identities=14%  Similarity=0.206  Sum_probs=115.9

Q ss_pred             CCCCCHHHHHHHHHHHhcccCCCcccCCC---CcchHHHHHHHHHHHhhhcCCCCCCCcEEEeCCHHHHHHHHHHH---h
Q psy13922         23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTD---SPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL---L   96 (509)
Q Consensus        23 ~~~~p~~v~~a~~~~l~~~~~~~~~~Y~~---~~g~~~lr~~va~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l   96 (509)
                      .-+++|.+.+.+.+.+.     .++-|.|   ++|..+.-=.....+.+..|.+  ..|.=.-.|++.+...++.+   .
T Consensus        74 ~~hy~P~v~~~~~~~~T-----aYTPYQPaEiSQG~LQalfEfQtmi~eLTGMd--vaNaS~yDGatA~aeA~~ma~r~~  146 (471)
T d1wyub1          74 TMKYNPKLHEEAARLFA-----DLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILIIRAYH  146 (471)
T ss_dssp             CCCCCCHHHHHHHHTTS-----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHHHHHH
T ss_pred             cCccCcchhhhHHHHHh-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC--ccccccchHHHHHHHHHHHHHHHh
Confidence            44678888887764332     2444765   5565544444444444443533  23333445555444433333   2


Q ss_pred             hcCCCCCCCeEEEcCCCCh-hHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhccCCceEEEEeCCCCCCCCCC
Q psy13922         97 IEDVDGKKPGVLIPIPQYP-LYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVL  175 (509)
Q Consensus        97 ~~~gd~~~~~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~~~~~~ivi~~p~NPtG~~~  175 (509)
                      .+.+......+++..+.+. .........+.+++.++.+..+  ..|.+.+......     ++.++++.+|++..+.. 
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~a~v~v~~p~~~g~~e-  218 (471)
T d1wyub1         147 EDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEG--EVDLEALKRELGP-----HVAALMLTNPNTLGLFE-  218 (471)
T ss_dssp             HHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTS--SBCHHHHHHHCST-----TEEEEEECSSCTTSCCC-
T ss_pred             hhcccccccccccCCcccccceeeeeecccceeecccccccc--cccchhhhhhhhc-----cccceeeccCCCccccc-
Confidence            2333222334454544444 4455566678888888866543  6678888776665     68899999999886655 


Q ss_pred             CHHHHHHHHHHHHHCCcEEEEcccCCcccccCCCccccHHHHHHHhCCCCCCceeEEEEecccccCCCC----CCeeEEE
Q psy13922        176 TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC----GLRGGYS  251 (509)
Q Consensus       176 s~~~l~~l~~ia~~~~i~lI~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~G~~----Glr~G~v  251 (509)
                        ++.+++++++++.+..+++|-+-......    ..+..+    .+     ...+++ ...+.+ |.|    |--+|++
T Consensus       219 --~~~~~~~~~~h~~g~~~~~~~~~~~~~~~----l~~p~~----~g-----~div~v-g~~q~~-G~P~~~GGP~~G~~  281 (471)
T d1wyub1         219 --RRILEISRLCKEAGVQLYYDGANLNAIMG----WARPGD----MG-----FDVVHL-NLHKTF-TVPHGGGGPGSGPV  281 (471)
T ss_dssp             --TTHHHHHHHHHHHTCEEEEEGGGGGGTTT----TCCHHH----HT-----CSEEEC-CTTTTT-CCCCTTSCCCCCCE
T ss_pred             --chhhhhHHHHHhccccccccccchhhhhh----ccccCc----cc-----cccccc-cccccc-ccccccccccccce
Confidence              34778888888989888887544332211    111111    11     124544 557766 554    3336777


Q ss_pred             eeecCCHHHHHHH
Q psy13922        252 EVINLDPGVKAML  264 (509)
Q Consensus       252 ~~~~~~~~~~~~l  264 (509)
                      .   ..++++..+
T Consensus       282 a---~~~~~~R~~  291 (471)
T d1wyub1         282 G---VKAHLAPYL  291 (471)
T ss_dssp             E---ECGGGGGGC
T ss_pred             e---ehhhhhccC
Confidence            6   466665544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.73  E-value=2.4  Score=37.49  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=67.9

Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      ..+++|.|++.-=..+.+.|.+.|.    .|++.+-.-.......+..|.++..+..|-.     |.+.+++.++...+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~~~~~~~~   76 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA----RVAIADINLEAARATAAEIGPAACAIALDVT-----DQASIDRCVAELLDR   76 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE----EEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhCCceEEEEeeCC-----CHHHHHHHHHHHHHH
Confidence            3577777776666677788888887    8888765555666777777888888877633     778888877765433


Q ss_pred             -CCceEEEEeCCCCCCC--CCCCHHHHHHHHHH
Q psy13922        157 -CNPRAIVIINPGNPTG--QVLTKENIQDIIKF  186 (509)
Q Consensus       157 -~~~~~ivi~~p~NPtG--~~~s~~~l~~l~~i  186 (509)
                       .++.++|-+...++.+  ..++.++|++..++
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~v  109 (256)
T d1k2wa_          77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAI  109 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             hCCccEEEeecccccccccccCCHHHHHhhhce
Confidence             4677666443323323  25577888887764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.57  E-value=2.8  Score=36.67  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             CCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh
Q psy13922         75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR  154 (509)
Q Consensus        75 ~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  154 (509)
                      .-..+++|.|+..-=..+.+.|.+.|.    +|++..-.-.......+..|.++..+..|-.     +.+.+++.++...
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls-----~~~~i~~~~~~i~   74 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA----SLVAVDREERLLAEAVAALEAEAIAVVADVS-----DPKAVEAVFAEAL   74 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTCCSSEEEEECCTT-----SHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcCCceEEEEecCC-----CHHHHHHHHHHHH
Confidence            345678888887777778888999888    8888776656666777788888888877643     6777877776644


Q ss_pred             cc-CCceEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q psy13922        155 KH-CNPRAIVIINPGNPTGQ--VLTKENIQDIIKF  186 (509)
Q Consensus       155 ~~-~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~i  186 (509)
                      +. .++.+++-+...++.+.  -++.++|++..++
T Consensus        75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~  109 (241)
T d2a4ka1          75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRV  109 (241)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred             HHhCCccEeccccccccccchhhhhcccccccccc
Confidence            32 36777665533333333  4566666666554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.42  E-value=4.4  Score=35.28  Aligned_cols=99  Identities=11%  Similarity=0.089  Sum_probs=64.3

Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      ..+++|.|++.-=..+.+.|.+.|.    .|++..-.-.......+..+.+.+.+++.       |.+.+++.++...+.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~----~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~-------~~~~v~~~~~~~~~~   74 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGA----RLVACDIEEGPLREAAEAVGAHPVVMDVA-------DPASVERGFAEALAH   74 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTTTCEEEECCTT-------CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcCCeEEEEecC-------CHHHHHHHHHHHHHh
Confidence            4577777777666777788888887    88887766556666677777776554332       677777777664332


Q ss_pred             -CCceEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q psy13922        157 -CNPRAIVIINPGNPTGQ--VLTKENIQDIIKF  186 (509)
Q Consensus       157 -~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~i  186 (509)
                       .++.++|-+.-.++.+.  -++.++|++..++
T Consensus        75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~v  107 (242)
T d1ulsa_          75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRV  107 (242)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             cCCceEEEECCcccccCchhhCcchhhhccccc
Confidence             35776554422222232  5777888887774

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.34  E-value=4.6  Score=35.26  Aligned_cols=102  Identities=15%  Similarity=-0.005  Sum_probs=65.4

Q ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhc
Q psy13922         76 WQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK  155 (509)
Q Consensus        76 ~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~  155 (509)
                      -..+++|.|++.-=..+.+.|.+.|.    .|++.+-.-.......+..+.+...+..|-     -|.+.+++.+++..+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~   76 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA----KVVFGDILDEEGKAMAAELADAARYVHLDV-----TQPAQWKAAVDTAVT   76 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHTGGGEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhhCcceEEEeec-----CCHHHHHHHHHHHHH
Confidence            34566676665555566778888887    888876555555666666777777777653     367888877766543


Q ss_pred             c-CCceEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q psy13922        156 H-CNPRAIVIINPGNPTGQ--VLTKENIQDIIKF  186 (509)
Q Consensus       156 ~-~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~i  186 (509)
                      . .++.+++-+....+.+.  -++.++|++..++
T Consensus        77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~v  110 (244)
T d1nffa_          77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDV  110 (244)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred             HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhc
Confidence            2 35666665433434443  4567888877764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.13  E-value=4.5  Score=35.61  Aligned_cols=103  Identities=14%  Similarity=0.054  Sum_probs=66.4

Q ss_pred             CCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhh
Q psy13922         75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR  154 (509)
Q Consensus        75 ~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~  154 (509)
                      .-..+++|.|++.-=..+.+.|.+.|.    .|++.+-.-.......+..|.++..+..|-.     |.+.+++.++...
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga----~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~   74 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA----RVVLADVLDEEGAATARELGDAARYQHLDVT-----IEEDWQRVVAYAR   74 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTTGGGEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhCCceEEEEcccC-----CHHHHHHHHHHHH
Confidence            334577777776666677788888887    8888766555666777777877777776633     6778877776643


Q ss_pred             cc-CCceEEEEeCCCCCCC--CCCCHHHHHHHHHH
Q psy13922        155 KH-CNPRAIVIINPGNPTG--QVLTKENIQDIIKF  186 (509)
Q Consensus       155 ~~-~~~~~ivi~~p~NPtG--~~~s~~~l~~l~~i  186 (509)
                      +. .++.++|-+.-..+.+  ..++.++|++..++
T Consensus        75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~v  109 (254)
T d1hdca_          75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEI  109 (254)
T ss_dssp             HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred             HHcCCccEEEecCccccccccccccccccchhhhH
Confidence            32 3567655432222222  25666777777663

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.61  E-value=6  Score=34.62  Aligned_cols=101  Identities=15%  Similarity=0.065  Sum_probs=65.2

Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      ..+++|.|++.-=..+.+.|.+.|.    .|++.+-.-.......+..+.+...+..|-     -|.+.+++.++...+.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga----~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA----KVAFSDINEAAGQQLAAELGERSMFVRHDV-----SSEADWTLVMAAVQRR   77 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHCTTEEEECCCT-----TCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhCCCeEEEEeec-----CCHHHHHHHHHHHHHH
Confidence            3566666666555666777888887    888877655556666777788777777653     3677777777664332


Q ss_pred             -CCceEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q psy13922        157 -CNPRAIVIINPGNPTGQ--VLTKENIQDIIKF  186 (509)
Q Consensus       157 -~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~i  186 (509)
                       .++.+++-+.-.+..+.  .++.++|++..++
T Consensus        78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~v  110 (253)
T d1hxha_          78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKI  110 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred             hCCCCeEEecccccCCCCcccCCHHHHHHHHHH
Confidence             45666665433333332  5567788877764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.38  E-value=7.2  Score=34.01  Aligned_cols=103  Identities=12%  Similarity=0.128  Sum_probs=65.5

Q ss_pred             CCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHH
Q psy13922         75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SLAEFNMEQIGYYLDESKQWGLPISELERSI  150 (509)
Q Consensus        75 ~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i  150 (509)
                      .-..+++|.|++.-=..+.+.|.+.|.    .|++..-.-.....    ..+..|.++..+..|-.     |.+.+++.+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~-----~~~~v~~~~   74 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC----SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVS-----NYEEVKKLL   74 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTT-----CHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCC-----CHHHHHHHH
Confidence            334577777776666667788888887    88876644333332    33455888888877633     678877777


Q ss_pred             Hhhhcc-CCceEEEEeCCCCCCCC--CCCHHHHHHHHHH
Q psy13922        151 TEARKH-CNPRAIVIINPGNPTGQ--VLTKENIQDIIKF  186 (509)
Q Consensus       151 ~~~~~~-~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~i  186 (509)
                      +...+. .++..+|-+.-..+.+.  -++.++|++..++
T Consensus        75 ~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~v  113 (251)
T d1vl8a_          75 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEV  113 (251)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHh
Confidence            664332 46777664433344443  4688888887774

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=82.03  E-value=5.1  Score=34.89  Aligned_cols=101  Identities=12%  Similarity=0.055  Sum_probs=64.0

Q ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHHHHHhcCCEEEEEecCCCCCCCCCHHHHHHHHHhhhcc
Q psy13922         77 QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH  156 (509)
Q Consensus        77 ~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i~~~~~~  156 (509)
                      .-+++|.|++.-=..+.+.|.+.|.    .|++..-.-.......+..+.+...+..|-.     |.+.+++.++...+.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~----~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA----KVIGTATSENGAQAISDYLGANGKGLMLNVT-----DPASIESVLEKIRAE   75 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHHGGGEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHhCCCCcEEEEEec-----CHHHhhhhhhhhhcc
Confidence            3467777666666667778888887    8887765555556666666777777766532     678887777765433


Q ss_pred             -CCceEEEEeCCCCCCC--CCCCHHHHHHHHHH
Q psy13922        157 -CNPRAIVIINPGNPTG--QVLTKENIQDIIKF  186 (509)
Q Consensus       157 -~~~~~ivi~~p~NPtG--~~~s~~~l~~l~~i  186 (509)
                       .++..+|-+....+.+  .-++.++|++..++
T Consensus        76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~v  108 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIET  108 (243)
T ss_dssp             TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             cCCcceehhhhhhccccccccccccccccccce
Confidence             4567666443233333  24566777776663

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.18  E-value=6.4  Score=34.52  Aligned_cols=104  Identities=12%  Similarity=0.049  Sum_probs=65.3

Q ss_pred             CCCcEEEeCCHHHHHHHHHHHhhcCCCCCCCeEEEcCCCChhHHH----HHHhcCCEEEEEecCCCCCCCCCHHHHHHHH
Q psy13922         75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSA----SLAEFNMEQIGYYLDESKQWGLPISELERSI  150 (509)
Q Consensus        75 ~~~~i~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~L~~~i  150 (509)
                      .-..+++|.|++.-=..+.+.|.+.|.    .|++..-.-.....    ..+..|.++..+..|-.     |.+.+++.+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~   78 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA----NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVS-----NTDIVTKTI   78 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE----EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTT-----CHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCC-----CHHHHHHHH
Confidence            334577777776666667788888887    78776655444433    33455888888877633     778888877


Q ss_pred             Hhhhcc-CCceEEEEeCCCCCCCC--CCCHHHHHHHHHHH
Q psy13922        151 TEARKH-CNPRAIVIINPGNPTGQ--VLTKENIQDIIKFA  187 (509)
Q Consensus       151 ~~~~~~-~~~~~ivi~~p~NPtG~--~~s~~~l~~l~~ia  187 (509)
                      +...+. .++..+|-+...++.+.  -++.++++++.++-
T Consensus        79 ~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N  118 (260)
T d1h5qa_          79 QQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVN  118 (260)
T ss_dssp             HHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEecccccccccCCHHHhcccccccccccc
Confidence            765433 35666554433333332  46778888877643