Psyllid ID: psy13963

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MCTITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGGGKVGNSNNNNYSDYVHVEGMEEKRQNSMVETKQI
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHEHEEHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccEEccccc
mctittpfsspppgvFLSLLIFLSIAGNILVCAAIYtdrglrriGNLFLASLAIADLFVAALVMSFALVNDLLgywmfgpqfcdtWIAFDVMCSTSSILNLCAISLdryihikdplrysrwvTRKVAVGTIACIWLLAALISfvpislglhrppvpvelyegelptcaldltptyaVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSiravtrplpsssslprpspalhitttsspyhvsdhkaAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWlgysnsafnpiIYSIYNKEFRDAFKRILITNYAASTAYTCclcyvccrgdayaaggdfrdyaatsrgagfgasgdwdlggggkvgnsnnnnysdyVHVEGMEEKRQNSMVETKQI
mctittpfsspppGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVtrplpsssslprpspALHITttsspyhvSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGGGKVGNSNNNNYSDYVHVEgmeekrqnsmvetkqi
MCTITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTrplpsssslprpspALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAgfgasgdwdlggggkvgnsnnnnYSDYVHVEGMEEKRQNSMVETKQI
*************GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAV*************************YHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGG**********************************
*******FSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQ*****************************************AAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAAS********************************************************************************
********SSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAV************PSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGGGKVGNSNNNNYSDYVHVEGMEE************
*CTITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTR*********************SPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAAST*******************************************************************************
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCTITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGGGKVGNSNNNNYSDYVHVEGMEEKRQNSMVETKQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
P41596511 Dopamine receptor 1 OS=Dr yes N/A 0.751 0.590 0.768 1e-138
P53454463 D(5)-like dopamine recept N/A N/A 0.741 0.643 0.419 2e-64
P53452459 D(1)-like dopamine recept N/A N/A 0.746 0.653 0.431 3e-64
P42291465 D(1C) dopamine receptor O N/A N/A 0.703 0.608 0.420 2e-61
Q8BLD9478 D(1B) dopamine receptor O yes N/A 0.726 0.610 0.405 3e-61
P35406363 D(1) dopamine receptor OS N/A N/A 0.746 0.826 0.424 3e-61
P25115475 D(1B) dopamine receptor O yes N/A 0.726 0.614 0.399 1e-60
P42289451 D(1A) dopamine receptor O N/A N/A 0.736 0.656 0.404 2e-60
P42290457 D(1B) dopamine receptor O N/A N/A 0.728 0.641 0.409 2e-59
P47800386 D(1)-like dopamine recept N/A N/A 0.723 0.753 0.408 2e-58
>sp|P41596|DOPR1_DROME Dopamine receptor 1 OS=Drosophila melanogaster GN=DopR PE=2 SV=2 Back     alignment and function desciption
 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/315 (76%), Positives = 268/315 (85%), Gaps = 13/315 (4%)

Query: 14  GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
           G+FLS+LIFLS+AGNILVC AIYT+R LRRIGNLFLASLAIADLFVA+LVM+FA VNDLL
Sbjct: 147 GIFLSVLIFLSVAGNILVCLAIYTERSLRRIGNLFLASLAIADLFVASLVMTFAGVNDLL 206

Query: 74  GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
           GYW+FG QFCDTW+AFDVMCST+SILNLCAIS+DRYIHIKDPLRY RWVTR+VAV TIA 
Sbjct: 207 GYWIFGAQFCDTWVAFDVMCSTASILNLCAISMDRYIHIKDPLRYGRWVTRRVAVITIAA 266

Query: 134 IWLLAALISFVPISLGLHRPPVPV--ELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
           IWLLAA +SFVPISLG+HRP  P+  E    + PTCALDLTPTYAVVSSCISFY PC+VM
Sbjct: 267 IWLLAAFVSFVPISLGIHRPDQPLIFEDNGKKYPTCALDLTPTYAVVSSCISFYFPCVVM 326

Query: 192 LGIYLRLYCYAQKHVKSIRAVTRP-----------LPSSSSLPRPSPALHITTTSSPYHV 240
           +GIY RLYCYAQKHVKSI+AVTRP           +    + P+     ++ T SSPYHV
Sbjct: 327 IGIYCRLYCYAQKHVKSIKAVTRPGEVAEKQRYKSIRRPKNQPKKFKVRNLHTHSSPYHV 386

Query: 241 SDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIY 300
           SDHKAA+TVGVIMG FL+CWVPFFCVNI AAFCKTCI G  FKILTWLGYSNSAFNPIIY
Sbjct: 387 SDHKAAVTVGVIMGVFLICWVPFFCVNITAAFCKTCIGGQTFKILTWLGYSNSAFNPIIY 446

Query: 301 SIYNKEFRDAFKRIL 315
           SI+NKEFRDAFKRIL
Sbjct: 447 SIFNKEFRDAFKRIL 461
Receptor for dopamine. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. Might be involved in the processing of visual information and/or visual learning. Important for Pavlovian conditioning: required in the mushroom body as a receptor conveying unconditional stimuli information, has a role in memory formation for aversive and appetitive learning. Sleep-deprivation-induced impairments in learning can be partially explained through alterations in dopamine signaling, DopR expression levels are reduced; sleep may have a role in restoring dopamine homeostasis.
Drosophila melanogaster (taxid: 7227)
>sp|P53454|DRD5L_TAKRU D(5)-like dopamine receptor OS=Takifugu rubripes GN=dl PE=3 SV=1 Back     alignment and function description
>sp|P53452|DRD1L_TAKRU D(1)-like dopamine receptor OS=Takifugu rubripes GN=d14 PE=3 SV=1 Back     alignment and function description
>sp|P42291|DRD1C_XENLA D(1C) dopamine receptor OS=Xenopus laevis GN=drd1c PE=2 SV=1 Back     alignment and function description
>sp|Q8BLD9|DRD5_MOUSE D(1B) dopamine receptor OS=Mus musculus GN=Drd5 PE=2 SV=1 Back     alignment and function description
>sp|P35406|DRD1_CARAU D(1) dopamine receptor OS=Carassius auratus PE=2 SV=1 Back     alignment and function description
>sp|P25115|DRD5_RAT D(1B) dopamine receptor OS=Rattus norvegicus GN=Drd5 PE=2 SV=1 Back     alignment and function description
>sp|P42289|DRD1_XENLA D(1A) dopamine receptor OS=Xenopus laevis GN=drd1 PE=2 SV=1 Back     alignment and function description
>sp|P42290|DRD5_XENLA D(1B) dopamine receptor OS=Xenopus laevis GN=drd5 PE=2 SV=1 Back     alignment and function description
>sp|P47800|DRD1L_OREMO D(1)-like dopamine receptor OS=Oreochromis mossambicus PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
270014295439 hypothetical protein TcasGA2_TC012447 [T 0.766 0.701 0.793 1e-142
189240950446 PREDICTED: similar to dopamine receptor 0.766 0.690 0.793 1e-142
195329064496 GM25874 [Drosophila sechellia] gi|194120 0.751 0.608 0.768 1e-136
442619032 560 dopamine receptor, isoform E [Drosophila 0.751 0.539 0.768 1e-136
281361751481 dopamine receptor, isoform C [Drosophila 0.751 0.627 0.768 1e-136
221379236496 dopamine receptor, isoform B [Drosophila 0.751 0.608 0.768 1e-136
194900707496 GG21429 [Drosophila erecta] gi|190651600 0.751 0.608 0.768 1e-136
386765736 511 dopamine receptor, isoform D [Drosophila 0.751 0.590 0.768 1e-136
195570973422 GD20445 [Drosophila simulans] gi|1941994 0.751 0.715 0.765 1e-136
195501687494 GE10051 [Drosophila yakuba] gi|194184000 0.751 0.611 0.765 1e-136
>gi|270014295|gb|EFA10743.1| hypothetical protein TcasGA2_TC012447 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/319 (79%), Positives = 279/319 (87%), Gaps = 11/319 (3%)

Query: 14  GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
           G FL+LLIFLS+AGNILVC AIYTDRGLRRIGNLFLASLAIADLFVA+LVM+FA VND+L
Sbjct: 52  GTFLTLLIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIADLFVASLVMTFAGVNDIL 111

Query: 74  GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
           GYW+FG QFCDTW+AFDVMCST+SILNLCAISLDRYIHIKDPLRY RWVTR+VA+GTIA 
Sbjct: 112 GYWIFGAQFCDTWVAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRWVTRRVALGTIAT 171

Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEG--ELPTCALDLTPTYAVVSSCISFYVPCIVM 191
           IWLLAALISFVPISLGLHRPP P+    G    PTCALDLTPTYAVVSSCISFYVPCIVM
Sbjct: 172 IWLLAALISFVPISLGLHRPPQPLVYNAGGQNYPTCALDLTPTYAVVSSCISFYVPCIVM 231

Query: 192 LGIYLRLYCYAQKHVKSIRAVTRP--LPSSS----SLPRPSPALHI---TTTSSPYHVSD 242
           +GIY RLYCYAQKHVK+IRA+TRP  LP +S    S+ + + ALHI      SSPYHVSD
Sbjct: 232 IGIYCRLYCYAQKHVKNIRAITRPIDLPENSNTKKSMKQKNKALHIHLHNHHSSPYHVSD 291

Query: 243 HKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSI 302
           HKAA+TVG+IMG FL+CWVPFFC+NI+AAFCKTCIP   FKILTWLGYSNSAFNPIIYSI
Sbjct: 292 HKAAVTVGIIMGVFLICWVPFFCINIVAAFCKTCIPDITFKILTWLGYSNSAFNPIIYSI 351

Query: 303 YNKEFRDAFKRILITNYAA 321
           +N EFR+AFKRIL  +Y A
Sbjct: 352 FNTEFREAFKRILTAHYPA 370

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189240950|ref|XP_971542.2| PREDICTED: similar to dopamine receptor I [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195329064|ref|XP_002031231.1| GM25874 [Drosophila sechellia] gi|194120174|gb|EDW42217.1| GM25874 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|442619032|ref|NP_001262563.1| dopamine receptor, isoform E [Drosophila melanogaster] gi|440217417|gb|AGB95944.1| dopamine receptor, isoform E [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|281361751|ref|NP_001163607.1| dopamine receptor, isoform C [Drosophila melanogaster] gi|272476972|gb|ACZ94904.1| dopamine receptor, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|221379236|ref|NP_477007.2| dopamine receptor, isoform B [Drosophila melanogaster] gi|220903084|gb|AAF55030.3| dopamine receptor, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194900707|ref|XP_001979897.1| GG21429 [Drosophila erecta] gi|190651600|gb|EDV48855.1| GG21429 [Drosophila erecta] Back     alignment and taxonomy information
>gi|386765736|ref|NP_001247092.1| dopamine receptor, isoform D [Drosophila melanogaster] gi|55977796|sp|P41596.2|DOPR1_DROME RecName: Full=Dopamine receptor 1; Short=D-DOP1; Short=DmDop1; Short=dDA1; Flags: Precursor gi|383292696|gb|AFH06410.1| dopamine receptor, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195570973|ref|XP_002103478.1| GD20445 [Drosophila simulans] gi|194199405|gb|EDX12981.1| GD20445 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195501687|ref|XP_002097899.1| GE10051 [Drosophila yakuba] gi|194184000|gb|EDW97611.1| GE10051 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
FB|FBgn0011582511 DopR "Dopamine receptor" [Dros 0.748 0.589 0.756 1.6e-125
WB|WBGene00001052460 dop-1 [Caenorhabditis elegans 0.490 0.428 0.497 9.8e-70
ZFIN|ZDB-GENE-070524-2446 drd1 "dopamine receptor D1" [D 0.746 0.672 0.432 1.6e-61
UNIPROTKB|F1NTE9437 F1NTE9 "Uncharacterized protei 0.343 0.315 0.521 1.3e-59
UNIPROTKB|F1NM61413 F1NM61 "Uncharacterized protei 0.766 0.745 0.396 2.7e-59
UNIPROTKB|F1P8N7474 DRD5 "Uncharacterized protein" 0.335 0.284 0.540 1.4e-58
UNIPROTKB|P21918477 DRD5 "D(1B) dopamine receptor" 0.335 0.283 0.532 7.8e-58
UNIPROTKB|F1S5G3471 DRD5 "Uncharacterized protein" 0.343 0.292 0.528 2.6e-57
UNIPROTKB|G3X8D2473 DRD5 "D(1B) dopamine receptor" 0.375 0.319 0.490 6.9e-57
UNIPROTKB|F1NW19445 LOC428961 "Uncharacterized pro 0.726 0.656 0.402 3.3e-56
FB|FBgn0011582 DopR "Dopamine receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 239/316 (75%), Positives = 264/316 (83%)

Query:    14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
             G+FLS+LIFLS+AGNILVC AIYT+R LRRIGNLFLASLAIADLFVA+LVM+FA VNDLL
Sbjct:   147 GIFLSVLIFLSVAGNILVCLAIYTERSLRRIGNLFLASLAIADLFVASLVMTFAGVNDLL 206

Query:    74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
             GYW+FG QFCDTW+AFDVMCST+SILNLCAIS+DRYIHIKDPLRY RWVTR+VAV TIA 
Sbjct:   207 GYWIFGAQFCDTWVAFDVMCSTASILNLCAISMDRYIHIKDPLRYGRWVTRRVAVITIAA 266

Query:   134 IWLLAALISFVPISLGLHRPPVPVELYEG---ELPTCALDLTPTYAVVSSCISFYVPCIV 190
             IWLLAA +SFVPISLG+HRP  P+ ++E    + PTCALDLTPTYAVVSSCISFY PC+V
Sbjct:   267 IWLLAAFVSFVPISLGIHRPDQPL-IFEDNGKKYPTCALDLTPTYAVVSSCISFYFPCVV 325

Query:   191 MLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXX-----------ALHITTTSSPYH 239
             M+GIY RLYCYAQKHVKSI+AVT                           ++ T SSPYH
Sbjct:   326 MIGIYCRLYCYAQKHVKSIKAVTRPGEVAEKQRYKSIRRPKNQPKKFKVRNLHTHSSPYH 385

Query:   240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPII 299
             VSDHKAA+TVGVIMG FL+CWVPFFCVNI AAFCKTCI G  FKILTWLGYSNSAFNPII
Sbjct:   386 VSDHKAAVTVGVIMGVFLICWVPFFCVNITAAFCKTCIGGQTFKILTWLGYSNSAFNPII 445

Query:   300 YSIYNKEFRDAFKRIL 315
             YSI+NKEFRDAFKRIL
Sbjct:   446 YSIFNKEFRDAFKRIL 461
GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA
GO:0001588 "dopamine neurotransmitter receptor activity, coupled via Gs" evidence=NAS;IMP;IDA
GO:0005887 "integral to plasma membrane" evidence=ISM;NAS
GO:0004952 "dopamine neurotransmitter receptor activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0007212 "dopamine receptor signaling pathway" evidence=ISS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0008306 "associative learning" evidence=IMP
GO:0007613 "memory" evidence=IMP
GO:0043052 "thermotaxis" evidence=IMP
GO:0040040 "thermosensory behavior" evidence=IMP
GO:0009744 "response to sucrose stimulus" evidence=IMP
GO:0042594 "response to starvation" evidence=IMP
GO:0071329 "cellular response to sucrose stimulus" evidence=IDA
WB|WBGene00001052 dop-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070524-2 drd1 "dopamine receptor D1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTE9 F1NTE9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NM61 F1NM61 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8N7 DRD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P21918 DRD5 "D(1B) dopamine receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5G3 DRD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3X8D2 DRD5 "D(1B) dopamine receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW19 LOC428961 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25115DRD5_RATNo assigned EC number0.39930.72630.6147yesN/A
P21728DRD1_HUMANNo assigned EC number0.40770.71140.6412yesN/A
P41596DOPR1_DROMENo assigned EC number0.76820.75120.5909yesN/A
P50130DRD1_PIGNo assigned EC number0.40960.70890.6390yesN/A
Q8BLD9DRD5_MOUSENo assigned EC number0.40540.72630.6108yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 6e-59
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 8e-08
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 3e-04
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 4e-04
pfam10320257 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR 7e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  192 bits (489), Expect = 6e-59
 Identities = 80/271 (29%), Positives = 121/271 (44%), Gaps = 23/271 (8%)

Query: 33  AAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVM 92
             I   + LR   N+FL +LA+ADL     +  +AL   + G W FG   C       V+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 93  CSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHR 152
              +SIL L AIS+DRY+ I  PLRY R  T + A   I  +W+LA L+S  P+     R
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 153 PPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAV 212
                 +    +         +Y ++S+ + F +P +V+L  Y  +    +K  +S  + 
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180

Query: 213 TRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAF 272
            R   SSS                     + KAA  + V++  F+LCW+P+  V ++ + 
Sbjct: 181 ARAKRSSS--------------------KERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220

Query: 273 CKT---CIPGYWFKILTWLGYSNSAFNPIIY 300
           C      +      I  WL Y NS  NPIIY
Sbjct: 221 CPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
KOG4219|consensus423 100.0
KOG4220|consensus503 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
KOG2087|consensus363 99.96
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.9
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.89
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.85
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.77
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.73
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.72
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.68
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 99.47
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 99.4
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.21
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 99.16
KOG4193|consensus610 99.12
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 99.11
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 99.09
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 99.05
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.99
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 98.91
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.84
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.7
KOG4564|consensus473 98.65
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.58
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.53
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 98.26
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 97.97
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 97.85
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 97.64
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 97.61
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 96.87
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 96.75
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 96.36
KOG4289|consensus2531 95.62
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 94.76
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 90.91
KOG1056|consensus878 80.74
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-45  Score=310.35  Aligned_cols=287  Identities=24%  Similarity=0.398  Sum_probs=236.8

Q ss_pred             CCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhh
Q psy13963          9 SSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIA   88 (402)
Q Consensus         9 ~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~   88 (402)
                      ...+.++++.++.+++++||.++++++..+|++|+.+|++++|||+||++.+++..++.........|.+|..+|++..|
T Consensus        34 ~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf  113 (423)
T KOG4219|consen   34 QQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNF  113 (423)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccc
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccc-------ccc
Q psy13963         89 FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVE-------LYE  161 (402)
Q Consensus        89 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~  161 (402)
                      +......+|++++++||+|||.||.||++.+  .+++..+++++++|+++++++.|..+..........+       ...
T Consensus       114 ~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~  191 (423)
T KOG4219|consen  114 FPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTA  191 (423)
T ss_pred             cchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEe
Confidence            9999999999999999999999999999855  7999999999999999999998877543332211110       001


Q ss_pred             CCCCcccccCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCc
Q psy13963        162 GELPTCALDLT----PTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSP  237 (402)
Q Consensus       162 ~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (402)
                      .....|..+..    ..|..+..++.+++|++++.+.|..|...+|..+......+                    +..+
T Consensus       192 ~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d--------------------~~~~  251 (423)
T KOG4219|consen  192 WPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD--------------------RKHE  251 (423)
T ss_pred             cccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc--------------------hhhH
Confidence            11122222221    23777888999999999999999999999997653221111                    2223


Q ss_pred             cccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhc----CCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHH
Q psy13963        238 YHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCK----TCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKR  313 (402)
Q Consensus       238 ~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~  313 (402)
                      ..+..+|+.||++++++.|.+||+|+.+..++.....    ......++....+++..|++.||+||++.|++||.++++
T Consensus       252 ~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~  331 (423)
T KOG4219|consen  252 QLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRR  331 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhh
Confidence            3446788999999999999999999999999876533    234457888899999999999999999999999999999


Q ss_pred             HHhh
Q psy13963        314 ILIT  317 (402)
Q Consensus       314 ~~~~  317 (402)
                      .|++
T Consensus       332 ~fr~  335 (423)
T KOG4219|consen  332 AFRW  335 (423)
T ss_pred             hhhe
Confidence            9954

>KOG4220|consensus Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>KOG1056|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-56
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-55
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-50
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-50
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 3e-50
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 1e-49
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 1e-47
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 1e-29
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 2e-29
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 3e-29
3p0g_A501 Structure Of A Nanobody-Stabilized Active State Of 5e-29
3p0g_A501 Structure Of A Nanobody-Stabilized Active State Of 1e-15
2rh1_A500 High Resolution Crystal Structure Of Human B2-Adren 5e-29
2rh1_A500 High Resolution Crystal Structure Of Human B2-Adren 1e-15
3d4s_A490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 5e-29
3d4s_A490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 1e-14
3pds_A458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 2e-28
3pds_A458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 1e-14
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 2e-23
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 6e-15
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 1e-21
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 3e-15
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 3e-20
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 8e-08
3eml_A488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 2e-18
3eml_A488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 2e-07
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 3e-18
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 1e-11
4eiy_A447 Crystal Structure Of The Chimeric Protein Of A2aar- 4e-18
4eiy_A447 Crystal Structure Of The Chimeric Protein Of A2aar- 1e-07
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-14
2x72_A349 Crystal Structure Of The Constitutively Active E113 6e-14
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 8e-14
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 8e-14
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 2e-13
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-12
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-12
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 4e-12
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 4e-12
4dkl_A464 Crystal Structure Of The Mu-Opioid Receptor Bound T 2e-09
4djh_A480 Structure Of The Human Kappa Opioid Receptor In Com 1e-07
4ej4_A461 Structure Of The Delta Opioid Receptor Bound To Nal 1e-06
3v2w_A520 Crystal Structure Of A Lipid G Protein-Coupled Rece 2e-06
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 1e-05
2ks9_A364 Solution Conformation Of Substance P In Water Compl 2e-05
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (546), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 19/303 (6%)
Query: 14  GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
            + ++L++ L +AGN+LV AAI + + L+ + NLF+ SLA ADL V  LV+ F     + 
Sbjct: 15  SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 74  GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
           G W++G   C+ W + DV+C T+SI  LC I++DRY+ I  P RY   +TR  A   I  
Sbjct: 75  GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLT-PTYAVVSSCISFYVPCIVML 192
           +W ++AL+SF+PI +   R   P  L   + P C   +T   YA+ SS ISFY+P ++M+
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMI 194
Query: 193 GIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGVI 252
            + LR+Y  A++ ++ I   +                    TS    + +HKA  T+G+I
Sbjct: 195 FVALRVYREAKEQIRKIDRASK-----------------RKTSRVMLMREHKALKTLGII 237
Query: 253 MGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312
           MG F LCW+PFF VNI+  F +  +P + F    WLGY+NSA NPIIY   + +FR AFK
Sbjct: 238 MGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK 296
Query: 313 RIL 315
           R+L
Sbjct: 297 RLL 299
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At 3.35a Length = 520 Back     alignment and structure
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-123
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-113
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-87
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 4e-28
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 5e-83
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 7e-29
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 2e-81
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 1e-28
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-76
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 3e-25
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 7e-76
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 2e-28
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 1e-75
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 2e-28
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-53
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 2e-49
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 2e-23
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-49
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 3e-48
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 6e-46
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 1e-28
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 6e-12
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-27
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 8e-09
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 2e-08
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
 Score =  364 bits (936), Expect = e-123
 Identities = 106/340 (31%), Positives = 169/340 (49%), Gaps = 14/340 (4%)

Query: 14  GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
           G+ +SL++   + GN+LV  AI     L+ + N F+ SLA ADL +   V+ F   + L 
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245

Query: 74  GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
             W FG  +C+ W + DV+C T+SI  LC I++DRY  I  P +Y   +T+  A   I  
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305

Query: 134 IWLLAALISFVPISLGLHRPPVPVELYE-GELPTCALDLTPTYAVVSSCISFYVPCIVML 192
           +W+++ L SF+PI +  +R      +    E   C       YA+ SS +SFYVP ++M+
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 365

Query: 193 GIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHV--SDHKAAITVG 250
            +Y R++  A++ ++ I          +                       +HKA  T+G
Sbjct: 366 FVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLG 425

Query: 251 VIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDA 310
           +IMGTF LCW+PFF VNI+       I    + +L W+GY NS FNP+IY   + +FR A
Sbjct: 426 IIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIA 484

Query: 311 FKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAA 350
           F+ +L                +   G+ Y++ G+  + + 
Sbjct: 485 FQELL----------CLRRSSLKAYGNGYSSNGNTGEQSG 514
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.55
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.48
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 97.93
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 95.72
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 85.19
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 84.57
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=2e-47  Score=360.38  Aligned_cols=306  Identities=19%  Similarity=0.304  Sum_probs=224.8

Q ss_pred             CChhHHHHHHHHHHHHHhhhheeeeeecCcCcc---ccchhHhHhHHHHHHHhHHHhhhHHHHHHhc--Ccccccccccc
Q psy13963         10 SPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLR---RIGNLFLASLAIADLFVAALVMSFALVNDLL--GYWMFGPQFCD   84 (402)
Q Consensus        10 ~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r---~~~~~ll~~lai~dll~~l~~~~~~~~~~~~--~~~~~~~~~C~   84 (402)
                      .+++.+++.+++++|++||+++++++.+++++|   +++|+|++|||++|++.+++.+|+.+.....  +.|.+++.+|+
T Consensus        32 ~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~  111 (510)
T 4grv_A           32 KVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCR  111 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHH
Confidence            356778889999999999999999998877655   6789999999999999999999988877654  46999999999


Q ss_pred             hhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCC
Q psy13963         85 TWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGEL  164 (402)
Q Consensus        85 ~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (402)
                      +..++..++..+|++++++|++|||+||++|++|+..++++++..+++++|++++++++|+++......... +......
T Consensus       112 ~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~-~~~~~~~  190 (510)
T 4grv_A          112 GYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSA-DGTHPGG  190 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSS-SSCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhccccccc-CCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999998886543221111 1111122


Q ss_pred             CcccccCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC-----------------------
Q psy13963        165 PTCALDLT----PTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLP-----------------------  217 (402)
Q Consensus       165 ~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------  217 (402)
                      ..|...+.    ..|..+..++.+++|+++++++|+.|++.++++.+..........                       
T Consensus       191 ~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (510)
T 4grv_A          191 LVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTK  270 (510)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCC
T ss_pred             cccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCC
Confidence            23443332    345566677889999999999999999999876543211100000                       


Q ss_pred             ------------CCCCCCCCC-----------------------------------------------------------
Q psy13963        218 ------------SSSSLPRPS-----------------------------------------------------------  226 (402)
Q Consensus       218 ------------~~~~~~~~~-----------------------------------------------------------  226 (402)
                                  .........                                                           
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (510)
T 4grv_A          271 SPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFT  350 (510)
T ss_dssp             SSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCC
Confidence                        000000000                                                           


Q ss_pred             --------------------------------------CCccccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHH
Q psy13963        227 --------------------------------------PALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNI  268 (402)
Q Consensus       227 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~  268 (402)
                                                            +.........+..++|+|++||+++++++|++||+|+.++.+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l  430 (510)
T 4grv_A          351 NSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRL  430 (510)
T ss_dssp             HHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                  000011122334457889999999999999999999999999


Q ss_pred             HHHhhcCCCc--------hhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHh
Q psy13963        269 IAAFCKTCIP--------GYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILI  316 (402)
Q Consensus       269 ~~~~~~~~~~--------~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~  316 (402)
                      +..+.+....        .++..++.+|+++|+++||+||+++|++||++++++|+
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~  486 (510)
T 4grv_A          431 MFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLA  486 (510)
T ss_dssp             HHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC------
T ss_pred             HHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            8877544321        23556778899999999999999999999999999994
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 1e-31
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  121 bits (303), Expect = 1e-31
 Identities = 61/305 (20%), Positives = 121/305 (39%), Gaps = 27/305 (8%)

Query: 14  GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
             ++ LLI L    N L        + LR   N  L +LA+ADLF+     +  L   L 
Sbjct: 41  AAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 100

Query: 74  GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
           GY++FGP  C+    F  +    ++ +L  ++++RY+ +  P+          A+  +A 
Sbjct: 101 GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAF 159

Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCAL--DLTPTYAVVSSCISFYVPCIVM 191
            W++A   +  P+       P  ++   G             ++ +    + F +P IV+
Sbjct: 160 TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 219

Query: 192 LGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGV 251
              Y +L    ++     +                        S+    ++ +    V +
Sbjct: 220 FFCYGQLVFTVKEAAAQQQ-----------------------ESATTQKAEKEVTRMVII 256

Query: 252 IMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILT-WLGYSNSAFNPIIYSIYNKEFRDA 310
           ++  FL+CW+P+  V       +    G  F  +  +   +++ +NP+IY + NK+FR+ 
Sbjct: 257 MVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC 316

Query: 311 FKRIL 315
               L
Sbjct: 317 MVTTL 321

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-39  Score=285.45  Aligned_cols=281  Identities=22%  Similarity=0.359  Sum_probs=221.5

Q ss_pred             hhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhh
Q psy13963         12 PPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDV   91 (402)
Q Consensus        12 ~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~   91 (402)
                      ++++++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+...|+...++..
T Consensus        39 ~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  118 (348)
T d1u19a_          39 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFAT  118 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccc
Confidence            66778888999999999999999999999999999999999999999999989988888888888889999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCc--ccc
Q psy13963         92 MCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPT--CAL  169 (402)
Q Consensus        92 ~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  169 (402)
                      .+..++.++++++++|||++|++|++|+. ..+++....++.+|.+++++..++.+.............+.....  ...
T Consensus       119 ~~~~~s~~~l~~is~~R~~~i~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (348)
T d1u19a_         119 LGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEE  197 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCGG
T ss_pred             cceeeecchhhhhhcccceeeeccccccc-cccccccccceeeehhhhheecccccccceeccCCccccccccccccccc
Confidence            99999999999999999999999999877 466677778888898898888877754333322111111000000  011


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhh
Q psy13963        170 DLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITV  249 (402)
Q Consensus       170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (402)
                      .....+......+.+++|+++++++|.++.+.+|++.+..                       .......++++|.++++
T Consensus       198 ~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~  254 (348)
T d1u19a_         198 TNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ-----------------------QESATTQKAEKEVTRMV  254 (348)
T ss_dssp             GTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSS-----------------------CSSSHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-----------------------chhhhhHHHHhhHhheE
Confidence            1122345555666778899999999999876665432211                       11222345689999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhcCC-CchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHh
Q psy13963        250 GVIMGTFLLCWVPFFCVNIIAAFCKTC-IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILI  316 (402)
Q Consensus       250 ~~i~~~f~i~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~  316 (402)
                      ++++++|++||+|+.+..++....+.. .......+..++..+|+++||+||++++++||++++++++
T Consensus       255 ~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~  322 (348)
T d1u19a_         255 IIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC  322 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             EEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhC
Confidence            999999999999999888876665433 4456777888899999999999999999999999999984