Psyllid ID: psy13980
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 532 | ||||||
| 380022719 | 1131 | PREDICTED: LOW QUALITY PROTEIN: Golgi ap | 0.889 | 0.418 | 0.402 | 1e-118 | |
| 328785529 | 1130 | PREDICTED: Golgi apparatus protein 1-lik | 0.889 | 0.418 | 0.398 | 1e-117 | |
| 307193775 | 1129 | Golgi apparatus protein 1 [Harpegnathos | 0.892 | 0.420 | 0.410 | 1e-117 | |
| 350403549 | 1134 | PREDICTED: Golgi apparatus protein 1-lik | 0.892 | 0.418 | 0.393 | 1e-117 | |
| 340722902 | 1134 | PREDICTED: LOW QUALITY PROTEIN: Golgi ap | 0.894 | 0.419 | 0.395 | 1e-116 | |
| 322787876 | 1139 | hypothetical protein SINV_02924 [Solenop | 0.894 | 0.417 | 0.402 | 1e-116 | |
| 383850182 | 1150 | PREDICTED: Golgi apparatus protein 1-lik | 0.889 | 0.411 | 0.409 | 1e-116 | |
| 328710188 | 1089 | PREDICTED: Golgi apparatus protein 1-lik | 0.941 | 0.460 | 0.430 | 1e-111 | |
| 332016904 | 1111 | Golgi apparatus protein 1 [Acromyrmex ec | 0.936 | 0.448 | 0.418 | 1e-111 | |
| 307177643 | 1129 | Golgi apparatus protein 1 [Camponotus fl | 0.894 | 0.421 | 0.380 | 1e-109 |
| >gi|380022719|ref|XP_003695186.1| PREDICTED: LOW QUALITY PROTEIN: Golgi apparatus protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/577 (40%), Positives = 323/577 (55%), Gaps = 104/577 (18%)
Query: 1 ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMD 60
+ L L +C VGNFT Q + V LNP+I C ++ RYC++ L+ + D+M+
Sbjct: 614 DNLDRLNRNCKLAVGNFTEEQAEHVELNPIISAVCQDIMERYCEEILK--YGKDEGDMME 671
Query: 61 CLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVI 120
CL++HKN +R + KC+ ++EHFQL++ +Y FT FKEAC+ R+CP S+TKA VI
Sbjct: 672 CLIEHKNDFNMRSDYKCKAAVEHFQLISLKNYHFTYKFKEACRPSVKRWCPKSKTKADVI 731
Query: 121 ECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVE 180
ECLST + D + D + IPR CRQQ+++QL QQREN DP+L+ C D+ ++C +E
Sbjct: 732 ECLSTRVQEDIMKDTQHHIPRECRQQLKAQLYQQRENIQFDPILQAQCMNDIKQYCYNLE 791
Query: 181 RGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPA 240
G +Q+LECL HK+ +S CHK LF I +Q+ DSSSD+ALL+ C+ M+K +C+D +
Sbjct: 792 PGNSQILECLAAHKSKLSDTCHKQLFKIRKQEFQDSSSDFALLNNCRIMVKQFCHDISRS 851
Query: 241 KTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYK 300
+ L CLK+ YK
Sbjct: 852 QALDCLKK--------------------------------------------------YK 861
Query: 301 DSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKI- 359
D P+F++KCK +V++RMIEQN DYRFN L AC D++K+C V+ ++P D ELEGK+
Sbjct: 862 DEPTFDDKCKNIVVRRMIEQNTDYRFNTALQIACSYDINKHCKEVLLNEPTDKELEGKVI 921
Query: 360 -------------------------------------QGLCEMEKE-----EEMDSQRGT 377
+C E E E DS GT
Sbjct: 922 RCLKIKFRESKLLTKCEHQMTNILREAALNYHLNPLLATMCAHEIETICRTNENDS--GT 979
Query: 378 VEECLKRALVAGKIRD--RACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPG 435
VEECLK AG RD CR E+A LIE+ RADINVDPLL AC++D++KYC+DV G
Sbjct: 980 VEECLKMEFNAGN-RDMKEECRLEIADLIEQRRADINVDPLLQKACAVDISKYCSDVPQG 1038
Query: 436 NGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRS 495
GR + CL+ + + SLQ C ML RI+MFRNA LI P+S+Q++Y V +S
Sbjct: 1039 AGRHIKCLQNVLEDNNK---SLQPDCYKMLTTRIEMFRNAAKLI-GPNSIQELYSTVNQS 1094
Query: 496 PARRYLAGLLISIVGVIFLMGLVCGRVANRSAAAKRK 532
PARRY + ++++G+IF+ GL CGRV R+ K K
Sbjct: 1095 PARRYFMIIALTMIGIIFITGLFCGRVTRRTMIMKNK 1131
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328785529|ref|XP_397171.3| PREDICTED: Golgi apparatus protein 1-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|307193775|gb|EFN76453.1| Golgi apparatus protein 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|350403549|ref|XP_003486834.1| PREDICTED: Golgi apparatus protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|340722902|ref|XP_003399839.1| PREDICTED: LOW QUALITY PROTEIN: Golgi apparatus protein 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|322787876|gb|EFZ13759.1| hypothetical protein SINV_02924 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
| >gi|383850182|ref|XP_003700676.1| PREDICTED: Golgi apparatus protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|328710188|ref|XP_001948043.2| PREDICTED: Golgi apparatus protein 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|332016904|gb|EGI57713.1| Golgi apparatus protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
| >gi|307177643|gb|EFN66701.1| Golgi apparatus protein 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 532 | ||||||
| FB|FBgn0264561 | 1103 | Glg1 "Golgi complex-localized | 0.949 | 0.457 | 0.351 | 2.1e-84 | |
| UNIPROTKB|F1N8B2 | 1034 | GLG1 "Golgi apparatus protein | 0.949 | 0.488 | 0.330 | 5e-76 | |
| UNIPROTKB|F1P251 | 1042 | GLG1 "Golgi apparatus protein | 0.949 | 0.484 | 0.330 | 5e-76 | |
| UNIPROTKB|F1P250 | 1140 | GLG1 "Golgi apparatus protein | 0.949 | 0.442 | 0.330 | 1.5e-75 | |
| UNIPROTKB|Q02391 | 1142 | GLG1 "Golgi apparatus protein | 0.949 | 0.442 | 0.330 | 1.5e-75 | |
| RGD|69345 | 1171 | Glg1 "golgi glycoprotein 1" [R | 0.947 | 0.430 | 0.323 | 3.2e-74 | |
| UNIPROTKB|Q92896 | 1179 | GLG1 "Golgi apparatus protein | 0.947 | 0.427 | 0.323 | 3.4e-74 | |
| MGI|MGI:104967 | 1175 | Glg1 "golgi apparatus protein | 0.947 | 0.428 | 0.320 | 3.2e-73 | |
| UNIPROTKB|F6V9R9 | 1186 | GLG1 "Uncharacterized protein" | 0.947 | 0.424 | 0.320 | 4.4e-73 | |
| UNIPROTKB|E2QS07 | 1202 | GLG1 "Uncharacterized protein" | 0.947 | 0.419 | 0.320 | 4.8e-73 |
| FB|FBgn0264561 Glg1 "Golgi complex-localized glycoprotein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 192/547 (35%), Positives = 299/547 (54%)
Query: 1 ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMD 60
+ + +L+P+C +V +T + V LNP+IM CG + ++C L+ S +D+ D+MD
Sbjct: 584 KNMDQLQPECKTVVVKYTEEEAAHVELNPVIMNVCGEAMQQHCSAILK-SGKDNG-DMMD 641
Query: 61 CLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVI 120
CL+ HKN +LR + +CR +IEHFQ+++ + FT FKEAC+ + R+C +S TK +V+
Sbjct: 642 CLIAHKNDADLRKDLRCRAAIEHFQIISLKSFHFTTKFKEACRPYVQRFCSSSATKNEVV 701
Query: 121 ECLSTIITNDTLSDARFRIPRNCXXXXXXXXXXXXENFDLDPVLKTSCAQDVAKFCPGVE 180
CLS ++ NDT+ R +IP+ C E+ LDP L +C +++ +FC E
Sbjct: 702 ACLSEVMRNDTIKAQRHQIPKECRHQVKAQLYQQRESIQLDPKLANACKRELEQFCEE-E 760
Query: 181 RGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPA 240
+G Q LECL+ ++ CH A+F +++ +LGDS +DY LL+TCK MI +C + +
Sbjct: 761 KGPGQALECLIRKTHSLGKPCHHAIFMVKKSELGDSGTDYTLLTTCKEMIYKFCPSTDSS 820
Query: 241 KTLTCLKRMK--------CHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKT 292
K L CLK K CH + + + D + +L + C I YC A
Sbjct: 821 KLLDCLKTYKDDTQFDQRCHLVVVNRMIEQNTDFRFNPSLQSACGKNIDRYC-SNIVASA 879
Query: 293 LTCLKRYKDSPSFEEKCKLL-VIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQ 351
L P+ E K++ +K Q+ L + C +M K ++ Q
Sbjct: 880 L---------PNEELNGKVIHCLKDKFRQSA-------LDEPCAKEMIK----ILQEQAL 919
Query: 352 DSELEGKIQGLCEMEKEE----EMDS-QRGTVEECLKRALVAGKIRDRACREEVAALIEE 406
+ +L +Q C+ E +E +DS + G + ECLK A + +I +R C+ EVA LI E
Sbjct: 920 NYKLNPLLQVFCKSEIQELCKANVDSDEHGQLAECLKTAFLQKQIINRQCQMEVATLIAE 979
Query: 407 GRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLL 466
+ADI+VDP+L AC++DL +YC+ VA GNGR+L CL L + D + SL+ C+ L
Sbjct: 980 AKADIHVDPILETACTVDLLRYCSKVAAGNGRKLNCLRTLLK-DTPN--SLEADCREKLQ 1036
Query: 467 ARIDMFRNAE-ALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANR 525
RI+MFRNA+ L P +Q + V SPAR++ +L+S G++FL G+ GR R
Sbjct: 1037 RRIEMFRNADDTLALPPEDVQQLVQQVVASPARKFFLVILMSATGLVFLTGIFLGRATKR 1096
Query: 526 SAAAKRK 532
+ K K
Sbjct: 1097 AMGLKNK 1103
|
|
| UNIPROTKB|F1N8B2 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P251 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P250 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q02391 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| RGD|69345 Glg1 "golgi glycoprotein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q92896 GLG1 "Golgi apparatus protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:104967 Glg1 "golgi apparatus protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6V9R9 GLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QS07 GLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 532 | |||
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 2e-11 | |
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 6e-08 | |
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 7e-08 | |
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 6e-06 | |
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 2e-05 | |
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 4e-05 | |
| pfam00839 | 58 | pfam00839, Cys_rich_FGFR, Cysteine rich repeat | 6e-05 |
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-11
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 143 CRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKA 195
C+Q V ++ E++ LDPVL+ +C D+ KFC +E GE QVLECL EHK
Sbjct: 3 CQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECLKEHKD 55
|
This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1). Length = 58 |
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 532 | |||
| KOG3648|consensus | 1179 | 100.0 | ||
| KOG3648|consensus | 1179 | 100.0 | ||
| PF00839 | 58 | Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR | 99.3 | |
| PF00839 | 58 | Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR | 99.18 | |
| PF01102 | 122 | Glycophorin_A: Glycophorin A; InterPro: IPR001195 | 83.72 |
| >KOG3648|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-116 Score=920.29 Aligned_cols=499 Identities=34% Similarity=0.701 Sum_probs=478.3
Q ss_pred CcccCchHHHHHHHHHHHHHhhccccCcHHHHhhcHHHHHhhCchhhccccCCCccchhhHhhhccCCCCCCCccccHHH
Q psy13980 1 ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQS 80 (532)
Q Consensus 1 ~~~~~l~~~C~~~v~~~~~~~~~D~rld~~l~~aC~~~i~~~C~~~~~~~~~~~~g~vl~CL~~~k~~~~m~~~~~C~~~ 80 (532)
|||+++.++|+++|++||+.+++|++++..|++||+|+|++||+++++++ + |.|++|+||++||+.++|+. +|+.+
T Consensus 662 D~~~~~~~~C~~~~~~~TEmEs~D~~i~~~L~rAC~PiI~~~C~~~A~~~-I-D~GD~mECLi~NK~~K~MN~--KC~~~ 737 (1179)
T KOG3648|consen 662 DHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQ-I-DSGDLMECLIQNKHQKDMNE--KCAIG 737 (1179)
T ss_pred HHHHhcchHHHHHHhhhhhhhhhhhHHHHHHHHhccHHHHHHHHHHhhcc-C-ccchHHHHHHcCccHHHHHH--HHhhc
Confidence 68999999999999999999999999999999999999999999999999 8 99999999999999999998 99999
Q ss_pred HHHHHHHHhccccccHhHHHhhHHHHhccCCCCCCchhHHhHHHHhhhhccccc-ccCCCChhhHHHHHHHHHhhhhcCC
Q psy13980 81 IEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSD-ARFRIPRNCRQQVRSQLLQQRENFD 159 (532)
Q Consensus 81 v~~~q~~~~~D~rl~~~~~~ACk~Di~~lC~~v~~~g~Vl~CL~~~~~~~~~~~-~~~~Ls~~C~~ql~~~~~q~aedi~ 159 (532)
|+|||+++++||||+|+|++||++||.++|++++++.+++.|++..+++++... +.+++|.+|++||++...++.+++.
T Consensus 738 V~HF~Li~mrD~~FSYKF~~AC~~Di~~~C~~~~~~~~~iI~~~s~VR~~~~~~~~~~~~s~~CrrQLrV~~L~~~~~~~ 817 (1179)
T KOG3648|consen 738 VTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICLSTTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIR 817 (1179)
T ss_pred cchheeeeehhhhhhHHHHHHHHHHHHHhCcccccCcCeEEEehhhhhHHHHhccCcccccHHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999999999999999999876666666666677777654 6789999999999999999999999
Q ss_pred CChHHHhhhHHHHHhhCCCCCCChhHHHHHHHHhhhhhcHhHHHHHHHHhhhhccCcccchHHHhhcHHHHHhhccCCCC
Q psy13980 160 LDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEP 239 (532)
Q Consensus 160 ldp~l~~aC~~Di~~~C~~v~~G~g~vl~CL~~~~~~Ls~~C~~~l~~~~~~~~~d~~ld~~L~~aC~~di~~~C~~~~~ 239 (532)
++|.|+.+|..||..||++++.|.+++++||+.|+..||++|++.||.+++.++-|..+|+.|++.|+.||.+||++...
T Consensus 818 ~~P~L~~~C~~~IK~~~~~~~~~~~~~IECLr~N~~~L~~~C~~~iF~~~~~E~~D~~mD~~L~r~Cr~~I~rFC~~sDS 897 (1179)
T KOG3648|consen 818 LEPDLYEACKSDIKNFCSAVQYGNAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADS 897 (1179)
T ss_pred cCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHhcChHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHhhCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccc--------hhhHHHHhhhhhhhcCCCcccHHHHhhcHHHHHhhCCCC---------CCccHHHHHHhccCC
Q psy13980 240 AKTLTCLKR--------MKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDE---------EPAKTLTCLKRYKDS 302 (532)
Q Consensus 240 g~vl~CL~~--------~~C~~al~~~~~~e~~D~~~d~~L~~aC~~di~~fC~~~---------~~g~vl~CL~~~k~~ 302 (532)
..+|+||++ ++|++.|..+++..+.|+|+++.|..+|+.+|.+||+++ -.|.|++||+....+
T Consensus 898 ~~~L~CL~~~K~~~Lm~~~CK~~i~~R~~~~~~D~RL~P~L~~sCr~~~~~~C~~I~~~~~~~s~L~G~ViSCLr~r~~~ 977 (1179)
T KOG3648|consen 898 KTMLQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDDSELEGQVISCLKLRYAD 977 (1179)
T ss_pred HHHHHHHhccchHHhhcHHHHHHHHHHHHhhcccceeCHHHHHHHHhhHHhhChhhcCccccccccccchHHHHHHHHHH
Confidence 999999996 479999999999999999999999999999999999976 248999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhcccccCHHHHHhhhHHHHhhhhhhhcCCCCCccccccccccchhhhhhhhhcccccHHHHH
Q psy13980 303 PSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEEEMDSQRGTVEECL 382 (532)
Q Consensus 303 ~~~s~~C~~~v~~~~~~~~~Dyrl~p~L~~ACk~di~~~C~~~~~~~~~~~~~~g~v~~Cc~~~~~~~~~~~~~~V~~CL 382 (532)
..||+.|..+|.....+.+-||||||.|+.+|+.+|..+|.++... .++.|+|++||
T Consensus 978 ~~~S~~C~~~i~~~I~Es~~D~~LDP~L~~~C~~~I~~~CA~~~~s-----------------------~~~~~~V~ECL 1034 (1179)
T KOG3648|consen 978 QRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEEAAA-----------------------QEQTGQVEECL 1034 (1179)
T ss_pred hhcCcchHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHHh-----------------------ccccchHHHHH
Confidence 9999999999999999999999999999999999999999887643 46789999999
Q ss_pred HHHHhhcccCCHhHHHHHHHHHHhccccccCChHHHHhcHHHHHhhcccCCCCCchHHHHHHHHHhccccCCccchHhHH
Q psy13980 383 KRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCK 462 (532)
Q Consensus 383 k~~~~~~~~~~~~C~~ev~~~l~e~~~Di~lDP~L~~aC~~Di~~~C~~v~~G~Grvl~CL~~~l~~~~~~~~~L~~~C~ 462 (532)
|.+| .+|.++.|.+||+++|+|+.+||++||+|++||+-||++||++++||+||++.||++.+++. +..|+++|+
T Consensus 1035 K~~~--~KIr~~~C~~~V~~~L~ES~~DI~~DPVLH~ACAmDI~~~C~~i~PG~~R~~~CLM~s~~~~---~~~L~~EC~ 1109 (1179)
T KOG3648|consen 1035 KVNL--LKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCAAITPGRGRQMSCLMEALEDK---RVRLQPECK 1109 (1179)
T ss_pred HHhH--HHHhHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHhh---hhhhCHHHH
Confidence 9999 56889999999999999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhccccccc-hhhhhcC
Q psy13980 463 TMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANR-SAAAKRK 532 (532)
Q Consensus 463 ~~L~~r~~~~~~a~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~~gr~t~r-~~~~k~~ 532 (532)
+.|.+|++||+||++|+ ||+||++|+++||+||+|||||++|+|||+||||+|++||||||| ++|||||
T Consensus 1110 ~rL~DR~~mW~~A~~~A-~~D~~~~~A~~VM~~P~rN~IL~~isG~I~~i~LIG~~CGRisKr~~~EmK~R 1179 (1179)
T KOG3648|consen 1110 KRLNDRIEMWSYAAKVA-PADGFSDLAMQVMTSPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179 (1179)
T ss_pred hhhhhHHHHHHHHHhcC-CCccHHHHHHHHHcCcccchhHHHHhhHHHHHHHHHHHhccchHHHHHHhccC
Confidence 99999999999999999 999999999999999999999999999999999999999999999 9999998
|
|
| >KOG3648|consensus | Back alignment and domain information |
|---|
| >PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines | Back alignment and domain information |
|---|
| >PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines | Back alignment and domain information |
|---|
| >PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 532 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-13 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 1e-13
Identities = 85/525 (16%), Positives = 169/525 (32%), Gaps = 150/525 (28%)
Query: 3 LPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCL 62
L + V NF VQD+ + L + H+I D T + L
Sbjct: 22 LSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSG------TLRLFWTL 71
Query: 63 VQHKNSPELRGEPKCRQSIEHF-QLVTAGDYRFTV-AFKEACKHHAMRYCPTSRTKAKVI 120
+ E + ++ F + V +Y+F + K + P+ T+ I
Sbjct: 72 -------LSKQE----EMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTR-MYI 113
Query: 121 ECLSTIITNDTLSDARFRIPR-NCRQQVRSQLLQQRENFDLDPVL-------KTSCAQDV 172
E + ND A++ + R ++R LL+ R ++ ++ KT A DV
Sbjct: 114 EQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDV 170
Query: 173 AKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKF 232
+ ++C ++ F I +L + +S +L
Sbjct: 171 CL---------SYKVQCKMD-------------FKIFWLNLKNCNSPETVL--------- 199
Query: 233 YCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYAL-LNTCKPMIKFYCYDEEPAK 291
E + L ++ D SS+ L +++ + ++ +
Sbjct: 200 -----EMLQKL-------LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 292 TLTCLKRYKDS---PSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVT--VM 346
L L +++ +F CK+L+ R VT +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR--------------------FKQ---VTDFLS 282
Query: 347 AHQPQDSELEGKIQGLCEMEKEE------EMDSQRGTVEEC----LKRALVAGKIRDRAC 396
A L+ L E + + Q E + +++A IRD
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 397 R---------EEVAALIEEGRADINV-DPLLHAACSLDLTKYCADVA-PGNGRQLMCL-- 443
+++ +IE + +NV +P + L+ + P L+ L
Sbjct: 343 TWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIW 396
Query: 444 EELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDM 488
++ + D V + + K L+ + + E+ IS PS ++
Sbjct: 397 FDVIKSD--VMVVVNKLHKYSLVEK----QPKESTISIPSIYLEL 435
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 532 | |||
| 1afo_A | 40 | Glycophorin A; integral membrane protein, transmem | 85.55 |
| >1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A | Back alignment and structure |
|---|
Probab=85.55 E-value=0.48 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccc
Q psy13980 500 YLAGLLISIVGVIFLMGLVCGRVANR 525 (532)
Q Consensus 500 ~~~~~~~~~~~~~~~~g~~~gr~t~r 525 (532)
.||++.++++|.|+++..+-+|++|+
T Consensus 15 II~~vmaGiIG~IllI~y~I~rl~Kk 40 (40)
T 1afo_A 15 IIFGVMAGVIGTILLISYGIRRLIKK 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 47889999999999999999999884
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00