Psyllid ID: psy13980


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEEEMDSQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANRSAAAKRK
ccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHcccccccHHHHHHcHHHHHHcccccccccHHcHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHccc
erlpelkpdcaALVGnftsaqvqdvrlnpLIMKYCGHVIhrycddelrvsfrdSTRDVMDCLVQhknspelrgepkcrqsiehfqlvtagdYRFTVAFKEACKhhamrycptsrtkAKVIECLSTIItndtlsdarfriprNCRQQVRSQLLQQrenfdldpvlktscaqdvakfcpgvergEAQVLECLLEHKAAVSMKCHKALFHIEqqdlgdsssdyallstckpmikfycydeepaktltclKRMKCHKALFHIeqqdlgdsssdyallnTCKPMikfycydeepaktltclkrykdspsfeEKCKLLVIKRMIEQnedyrfnpelmkackpdmsKYCVTVMahqpqdseleGKIQGLCEMekeeemdsqrGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLtkycadvapgngrqlMCLEELArrdradgvsLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANRSAAAKRK
ERLPELKPDCAALVGNftsaqvqdvrlNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHknspelrgepkcRQSIEHFQLVTAGDYRFTVAFKEACKHhamrycptsrtkAKVIECLSTIitndtlsdarfrIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTclkrykdspsfEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEeemdsqrgtvEECLKRAlvagkirdraCREEVAALIEegradinvDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVAnrsaaakrk
ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSDARFRIPRNCrqqvrsqllqqrENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEEEMDSQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANRSAAAKRK
*********CAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQ************CRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMA*******************************EECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVA*********
****E*K*DCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIIT*****************QVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKD****EEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQG***************TVEECLKRALVAGK***RACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELA**************KTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANRS******
ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEME**********TVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVA*********
*RLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEEEMDSQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANRSA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
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ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEEEMDSQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANRSAAAKRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query532 2.2.26 [Sep-21-2011]
Q626381171 Golgi apparatus protein 1 yes N/A 0.928 0.421 0.304 1e-59
Q9Z1E91160 Golgi apparatus protein 1 yes N/A 0.928 0.425 0.299 2e-59
Q023911142 Golgi apparatus protein 1 yes N/A 0.928 0.432 0.304 2e-59
Q615431175 Golgi apparatus protein 1 yes N/A 0.928 0.420 0.299 3e-59
Q928961179 Golgi apparatus protein 1 yes N/A 0.924 0.417 0.294 2e-58
Q194591149 Golgi apparatus protein 1 yes N/A 0.913 0.422 0.274 3e-49
>sp|Q62638|GSLG1_RAT Golgi apparatus protein 1 OS=Rattus norvegicus GN=Glg1 PE=1 SV=1 Back     alignment and function desciption
 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 179/588 (30%), Positives = 274/588 (46%), Gaps = 94/588 (15%)

Query: 6    LKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQH 65
            L  +C A V      +  DV+L+P +   C   + ++C      S +  T   ++CL  H
Sbjct: 602  LSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWC------SEKTETGQELECLQDH 655

Query: 66   KNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYC----PTSRTKAKVIE 121
             +   +    +CR  + +   + + D +       AC+     +C            ++E
Sbjct: 656  LDDLAV----ECRDIVGNLTELESEDIQIEALLMRACEPIIHNFCHDVADNQIDSGDLME 711

Query: 122  CLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVER 181
            CL   I N    D    +   C   V    L Q ++F      K +C +DV K CP +++
Sbjct: 712  CL---IQNKHQKD----MNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKK 764

Query: 182  GEAQVLECLL------------EHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPM 229
             +  V+ CL             EH+  VS+KC K L   E +   D   +  L   CK  
Sbjct: 765  -KVDVVICLSTTVRNDTLQEAKEHR--VSLKCRKQLRVEELEMTEDIRLEPDLYEACKSD 821

Query: 230  IKFYCYDEE--PAKTLTCLKRMK------CHKALFHIEQQDLGDSSSDYALLNTCKPMIK 281
            IK YC   +   A+ + CLK  K      CH+ +F +++ ++ D   DY L+  CK MIK
Sbjct: 822  IKNYCSTVQYGNAQIIECLKENKKQLSTRCHQRVFKLQETEMMDPELDYTLMRVCKQMIK 881

Query: 282  FYCYDEEPAKTLTCLKRYKDSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKY 341
             +C + +    L CLK+ K+S   + KCK ++ KR I QN DYR NP L KACK D+ K+
Sbjct: 882  RFCPEADSKTMLQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPVLRKACKADIPKF 941

Query: 342  CVTVMAHQPQDSELEGKI----------QGL---CE-----MEKEEEMD----------- 372
            C  ++     DSELEG++          Q L   CE     + +E  +D           
Sbjct: 942  CHGILTKAKDDSELEGQVISCLKLRYADQRLSSDCEDQIRIITQESALDYRLDPQLQLHC 1001

Query: 373  ---------------SQRGTVEECLKRALVAGKIRDRACREEVAALIEEGRADINVDPLL 417
                            Q G VEECLK  L+  KIR   C++EV  +++E +ADI VDP+L
Sbjct: 1002 SDEIANLCAEEAAAQEQTGQVEECLKVNLL--KIRTELCKKEVLNMLKESKADIFVDPVL 1059

Query: 418  HAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEA 477
            H AC+LD+  +CA + PG GRQ+ CL E     R   V LQ +CK  L  RI+M+  A A
Sbjct: 1060 HTACALDIKHHCAAITPGRGRQMSCLMEALEDKR---VRLQPECKKRLNDRIEMWSYA-A 1115

Query: 478  LISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANR 525
             ++      D+   V  SP++ Y+  ++   + ++FL+GL+CGR+  R
Sbjct: 1116 KVAPADGFSDLAMQVMTSPSKNYILSVISGSICILFLIGLMCGRITKR 1163




Binds fibroblast growth factor. Binds E-selectin (cell-adhesion lectin on endothelial cells mediating the binding of neutrophils).
Rattus norvegicus (taxid: 10116)
>sp|Q9Z1E9|GSLG1_CRIGR Golgi apparatus protein 1 OS=Cricetulus griseus GN=GLG1 PE=1 SV=1 Back     alignment and function description
>sp|Q02391|GSLG1_CHICK Golgi apparatus protein 1 OS=Gallus gallus GN=GLG1 PE=1 SV=1 Back     alignment and function description
>sp|Q61543|GSLG1_MOUSE Golgi apparatus protein 1 OS=Mus musculus GN=Glg1 PE=1 SV=1 Back     alignment and function description
>sp|Q92896|GSLG1_HUMAN Golgi apparatus protein 1 OS=Homo sapiens GN=GLG1 PE=1 SV=2 Back     alignment and function description
>sp|Q19459|GSLG1_CAEEL Golgi apparatus protein 1 homolog OS=Caenorhabditis elegans GN=F14E5.2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
380022719 1131 PREDICTED: LOW QUALITY PROTEIN: Golgi ap 0.889 0.418 0.402 1e-118
328785529 1130 PREDICTED: Golgi apparatus protein 1-lik 0.889 0.418 0.398 1e-117
307193775 1129 Golgi apparatus protein 1 [Harpegnathos 0.892 0.420 0.410 1e-117
350403549 1134 PREDICTED: Golgi apparatus protein 1-lik 0.892 0.418 0.393 1e-117
340722902 1134 PREDICTED: LOW QUALITY PROTEIN: Golgi ap 0.894 0.419 0.395 1e-116
322787876 1139 hypothetical protein SINV_02924 [Solenop 0.894 0.417 0.402 1e-116
383850182 1150 PREDICTED: Golgi apparatus protein 1-lik 0.889 0.411 0.409 1e-116
328710188 1089 PREDICTED: Golgi apparatus protein 1-lik 0.941 0.460 0.430 1e-111
332016904 1111 Golgi apparatus protein 1 [Acromyrmex ec 0.936 0.448 0.418 1e-111
307177643 1129 Golgi apparatus protein 1 [Camponotus fl 0.894 0.421 0.380 1e-109
>gi|380022719|ref|XP_003695186.1| PREDICTED: LOW QUALITY PROTEIN: Golgi apparatus protein 1-like [Apis florea] Back     alignment and taxonomy information
 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/577 (40%), Positives = 323/577 (55%), Gaps = 104/577 (18%)

Query: 1    ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMD 60
            + L  L  +C   VGNFT  Q + V LNP+I   C  ++ RYC++ L+  +     D+M+
Sbjct: 614  DNLDRLNRNCKLAVGNFTEEQAEHVELNPIISAVCQDIMERYCEEILK--YGKDEGDMME 671

Query: 61   CLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVI 120
            CL++HKN   +R + KC+ ++EHFQL++  +Y FT  FKEAC+    R+CP S+TKA VI
Sbjct: 672  CLIEHKNDFNMRSDYKCKAAVEHFQLISLKNYHFTYKFKEACRPSVKRWCPKSKTKADVI 731

Query: 121  ECLSTIITNDTLSDARFRIPRNCRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVE 180
            ECLST +  D + D +  IPR CRQQ+++QL QQREN   DP+L+  C  D+ ++C  +E
Sbjct: 732  ECLSTRVQEDIMKDTQHHIPRECRQQLKAQLYQQRENIQFDPILQAQCMNDIKQYCYNLE 791

Query: 181  RGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPA 240
             G +Q+LECL  HK+ +S  CHK LF I +Q+  DSSSD+ALL+ C+ M+K +C+D   +
Sbjct: 792  PGNSQILECLAAHKSKLSDTCHKQLFKIRKQEFQDSSSDFALLNNCRIMVKQFCHDISRS 851

Query: 241  KTLTCLKRMKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKTLTCLKRYK 300
            + L CLK+                                                  YK
Sbjct: 852  QALDCLKK--------------------------------------------------YK 861

Query: 301  DSPSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKI- 359
            D P+F++KCK +V++RMIEQN DYRFN  L  AC  D++K+C  V+ ++P D ELEGK+ 
Sbjct: 862  DEPTFDDKCKNIVVRRMIEQNTDYRFNTALQIACSYDINKHCKEVLLNEPTDKELEGKVI 921

Query: 360  -------------------------------------QGLCEMEKE-----EEMDSQRGT 377
                                                   +C  E E      E DS  GT
Sbjct: 922  RCLKIKFRESKLLTKCEHQMTNILREAALNYHLNPLLATMCAHEIETICRTNENDS--GT 979

Query: 378  VEECLKRALVAGKIRD--RACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPG 435
            VEECLK    AG  RD    CR E+A LIE+ RADINVDPLL  AC++D++KYC+DV  G
Sbjct: 980  VEECLKMEFNAGN-RDMKEECRLEIADLIEQRRADINVDPLLQKACAVDISKYCSDVPQG 1038

Query: 436  NGRQLMCLEELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDMYGAVQRS 495
             GR + CL+ +   +     SLQ  C  ML  RI+MFRNA  LI  P+S+Q++Y  V +S
Sbjct: 1039 AGRHIKCLQNVLEDNNK---SLQPDCYKMLTTRIEMFRNAAKLI-GPNSIQELYSTVNQS 1094

Query: 496  PARRYLAGLLISIVGVIFLMGLVCGRVANRSAAAKRK 532
            PARRY   + ++++G+IF+ GL CGRV  R+   K K
Sbjct: 1095 PARRYFMIIALTMIGIIFITGLFCGRVTRRTMIMKNK 1131




Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785529|ref|XP_397171.3| PREDICTED: Golgi apparatus protein 1-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|307193775|gb|EFN76453.1| Golgi apparatus protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350403549|ref|XP_003486834.1| PREDICTED: Golgi apparatus protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722902|ref|XP_003399839.1| PREDICTED: LOW QUALITY PROTEIN: Golgi apparatus protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|322787876|gb|EFZ13759.1| hypothetical protein SINV_02924 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383850182|ref|XP_003700676.1| PREDICTED: Golgi apparatus protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328710188|ref|XP_001948043.2| PREDICTED: Golgi apparatus protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332016904|gb|EGI57713.1| Golgi apparatus protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307177643|gb|EFN66701.1| Golgi apparatus protein 1 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
FB|FBgn02645611103 Glg1 "Golgi complex-localized 0.949 0.457 0.351 2.1e-84
UNIPROTKB|F1N8B21034 GLG1 "Golgi apparatus protein 0.949 0.488 0.330 5e-76
UNIPROTKB|F1P2511042 GLG1 "Golgi apparatus protein 0.949 0.484 0.330 5e-76
UNIPROTKB|F1P2501140 GLG1 "Golgi apparatus protein 0.949 0.442 0.330 1.5e-75
UNIPROTKB|Q023911142 GLG1 "Golgi apparatus protein 0.949 0.442 0.330 1.5e-75
RGD|693451171 Glg1 "golgi glycoprotein 1" [R 0.947 0.430 0.323 3.2e-74
UNIPROTKB|Q928961179 GLG1 "Golgi apparatus protein 0.947 0.427 0.323 3.4e-74
MGI|MGI:1049671175 Glg1 "golgi apparatus protein 0.947 0.428 0.320 3.2e-73
UNIPROTKB|F6V9R91186 GLG1 "Uncharacterized protein" 0.947 0.424 0.320 4.4e-73
UNIPROTKB|E2QS071202 GLG1 "Uncharacterized protein" 0.947 0.419 0.320 4.8e-73
FB|FBgn0264561 Glg1 "Golgi complex-localized glycoprotein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 192/547 (35%), Positives = 299/547 (54%)

Query:     1 ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMD 60
             + + +L+P+C  +V  +T  +   V LNP+IM  CG  + ++C   L+ S +D+  D+MD
Sbjct:   584 KNMDQLQPECKTVVVKYTEEEAAHVELNPVIMNVCGEAMQQHCSAILK-SGKDNG-DMMD 641

Query:    61 CLVQHKNSPELRGEPKCRQSIEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVI 120
             CL+ HKN  +LR + +CR +IEHFQ+++   + FT  FKEAC+ +  R+C +S TK +V+
Sbjct:   642 CLIAHKNDADLRKDLRCRAAIEHFQIISLKSFHFTTKFKEACRPYVQRFCSSSATKNEVV 701

Query:   121 ECLSTIITNDTLSDARFRIPRNCXXXXXXXXXXXXENFDLDPVLKTSCAQDVAKFCPGVE 180
              CLS ++ NDT+   R +IP+ C            E+  LDP L  +C +++ +FC   E
Sbjct:   702 ACLSEVMRNDTIKAQRHQIPKECRHQVKAQLYQQRESIQLDPKLANACKRELEQFCEE-E 760

Query:   181 RGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEPA 240
             +G  Q LECL+    ++   CH A+F +++ +LGDS +DY LL+TCK MI  +C   + +
Sbjct:   761 KGPGQALECLIRKTHSLGKPCHHAIFMVKKSELGDSGTDYTLLTTCKEMIYKFCPSTDSS 820

Query:   241 KTLTCLKRMK--------CHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDEEPAKT 292
             K L CLK  K        CH  + +   +   D   + +L + C   I  YC     A  
Sbjct:   821 KLLDCLKTYKDDTQFDQRCHLVVVNRMIEQNTDFRFNPSLQSACGKNIDRYC-SNIVASA 879

Query:   293 LTCLKRYKDSPSFEEKCKLL-VIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQ 351
             L         P+ E   K++  +K    Q+        L + C  +M K    ++  Q  
Sbjct:   880 L---------PNEELNGKVIHCLKDKFRQSA-------LDEPCAKEMIK----ILQEQAL 919

Query:   352 DSELEGKIQGLCEMEKEE----EMDS-QRGTVEECLKRALVAGKIRDRACREEVAALIEE 406
             + +L   +Q  C+ E +E     +DS + G + ECLK A +  +I +R C+ EVA LI E
Sbjct:   920 NYKLNPLLQVFCKSEIQELCKANVDSDEHGQLAECLKTAFLQKQIINRQCQMEVATLIAE 979

Query:   407 GRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCKTMLL 466
              +ADI+VDP+L  AC++DL +YC+ VA GNGR+L CL  L + D  +  SL+  C+  L 
Sbjct:   980 AKADIHVDPILETACTVDLLRYCSKVAAGNGRKLNCLRTLLK-DTPN--SLEADCREKLQ 1036

Query:   467 ARIDMFRNAE-ALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANR 525
              RI+MFRNA+  L   P  +Q +   V  SPAR++   +L+S  G++FL G+  GR   R
Sbjct:  1037 RRIEMFRNADDTLALPPEDVQQLVQQVVASPARKFFLVILMSATGLVFLTGIFLGRATKR 1096

Query:   526 SAAAKRK 532
             +   K K
Sbjct:  1097 AMGLKNK 1103


GO:0000139 "Golgi membrane" evidence=IDA
GO:0005797 "Golgi medial cisterna" evidence=IDA
GO:0000137 "Golgi cis cisterna" evidence=IDA
GO:0000138 "Golgi trans cisterna" evidence=IDA
GO:0016021 "integral to membrane" evidence=IDA
GO:0008150 "biological_process" evidence=ND
GO:0003674 "molecular_function" evidence=ND
UNIPROTKB|F1N8B2 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P251 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P250 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q02391 GLG1 "Golgi apparatus protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|69345 Glg1 "golgi glycoprotein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q92896 GLG1 "Golgi apparatus protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:104967 Glg1 "golgi apparatus protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6V9R9 GLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QS07 GLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 2e-11
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 6e-08
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 7e-08
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 6e-06
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 2e-05
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 4e-05
pfam0083958 pfam00839, Cys_rich_FGFR, Cysteine rich repeat 6e-05
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information
 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 143 CRQQVRSQLLQQRENFDLDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKA 195
           C+Q V     ++ E++ LDPVL+ +C  D+ KFC  +E GE QVLECL EHK 
Sbjct: 3   CQQAVWRLQEEEAEDYRLDPVLQKACKDDIEKFCSDIEEGEGQVLECLKEHKD 55


This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1). Length = 58

>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information
>gnl|CDD|216144 pfam00839, Cys_rich_FGFR, Cysteine rich repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
KOG3648|consensus1179 100.0
KOG3648|consensus1179 100.0
PF0083958 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR 99.3
PF0083958 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR 99.18
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 83.72
>KOG3648|consensus Back     alignment and domain information
Probab=100.00  E-value=5.8e-116  Score=920.29  Aligned_cols=499  Identities=34%  Similarity=0.701  Sum_probs=478.3

Q ss_pred             CcccCchHHHHHHHHHHHHHhhccccCcHHHHhhcHHHHHhhCchhhccccCCCccchhhHhhhccCCCCCCCccccHHH
Q psy13980          1 ERLPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCLVQHKNSPELRGEPKCRQS   80 (532)
Q Consensus         1 ~~~~~l~~~C~~~v~~~~~~~~~D~rld~~l~~aC~~~i~~~C~~~~~~~~~~~~g~vl~CL~~~k~~~~m~~~~~C~~~   80 (532)
                      |||+++.++|+++|++||+.+++|++++..|++||+|+|++||+++++++ + |.|++|+||++||+.++|+.  +|+.+
T Consensus       662 D~~~~~~~~C~~~~~~~TEmEs~D~~i~~~L~rAC~PiI~~~C~~~A~~~-I-D~GD~mECLi~NK~~K~MN~--KC~~~  737 (1179)
T KOG3648|consen  662 DHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQ-I-DSGDLMECLIQNKHQKDMNE--KCAIG  737 (1179)
T ss_pred             HHHHhcchHHHHHHhhhhhhhhhhhHHHHHHHHhccHHHHHHHHHHhhcc-C-ccchHHHHHHcCccHHHHHH--HHhhc
Confidence            68999999999999999999999999999999999999999999999999 8 99999999999999999998  99999


Q ss_pred             HHHHHHHHhccccccHhHHHhhHHHHhccCCCCCCchhHHhHHHHhhhhccccc-ccCCCChhhHHHHHHHHHhhhhcCC
Q psy13980         81 IEHFQLVTAGDYRFTVAFKEACKHHAMRYCPTSRTKAKVIECLSTIITNDTLSD-ARFRIPRNCRQQVRSQLLQQRENFD  159 (532)
Q Consensus        81 v~~~q~~~~~D~rl~~~~~~ACk~Di~~lC~~v~~~g~Vl~CL~~~~~~~~~~~-~~~~Ls~~C~~ql~~~~~q~aedi~  159 (532)
                      |+|||+++++||||+|+|++||++||.++|++++++.+++.|++..+++++... +.+++|.+|++||++...++.+++.
T Consensus       738 V~HF~Li~mrD~~FSYKF~~AC~~Di~~~C~~~~~~~~~iI~~~s~VR~~~~~~~~~~~~s~~CrrQLrV~~L~~~~~~~  817 (1179)
T KOG3648|consen  738 VTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICLSTTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIR  817 (1179)
T ss_pred             cchheeeeehhhhhhHHHHHHHHHHHHHhCcccccCcCeEEEehhhhhHHHHhccCcccccHHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999999999999999999876666666666677777654 6789999999999999999999999


Q ss_pred             CChHHHhhhHHHHHhhCCCCCCChhHHHHHHHHhhhhhcHhHHHHHHHHhhhhccCcccchHHHhhcHHHHHhhccCCCC
Q psy13980        160 LDPVLKTSCAQDVAKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKFYCYDEEP  239 (532)
Q Consensus       160 ldp~l~~aC~~Di~~~C~~v~~G~g~vl~CL~~~~~~Ls~~C~~~l~~~~~~~~~d~~ld~~L~~aC~~di~~~C~~~~~  239 (532)
                      ++|.|+.+|..||..||++++.|.+++++||+.|+..||++|++.||.+++.++-|..+|+.|++.|+.||.+||++...
T Consensus       818 ~~P~L~~~C~~~IK~~~~~~~~~~~~~IECLr~N~~~L~~~C~~~iF~~~~~E~~D~~mD~~L~r~Cr~~I~rFC~~sDS  897 (1179)
T KOG3648|consen  818 LEPDLYEACKSDIKNFCSAVQYGNAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADS  897 (1179)
T ss_pred             cCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHhcChHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHhhCCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhcccc--------hhhHHHHhhhhhhhcCCCcccHHHHhhcHHHHHhhCCCC---------CCccHHHHHHhccCC
Q psy13980        240 AKTLTCLKR--------MKCHKALFHIEQQDLGDSSSDYALLNTCKPMIKFYCYDE---------EPAKTLTCLKRYKDS  302 (532)
Q Consensus       240 g~vl~CL~~--------~~C~~al~~~~~~e~~D~~~d~~L~~aC~~di~~fC~~~---------~~g~vl~CL~~~k~~  302 (532)
                      ..+|+||++        ++|++.|..+++..+.|+|+++.|..+|+.+|.+||+++         -.|.|++||+....+
T Consensus       898 ~~~L~CL~~~K~~~Lm~~~CK~~i~~R~~~~~~D~RL~P~L~~sCr~~~~~~C~~I~~~~~~~s~L~G~ViSCLr~r~~~  977 (1179)
T KOG3648|consen  898 KTMLQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDDSELEGQVISCLKLRYAD  977 (1179)
T ss_pred             HHHHHHHhccchHHhhcHHHHHHHHHHHHhhcccceeCHHHHHHHHhhHHhhChhhcCccccccccccchHHHHHHHHHH
Confidence            999999996        479999999999999999999999999999999999976         248999999999999


Q ss_pred             CCchHHHHHHHHHHHHHhhcccccCHHHHHhhhHHHHhhhhhhhcCCCCCccccccccccchhhhhhhhhcccccHHHHH
Q psy13980        303 PSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVTVMAHQPQDSELEGKIQGLCEMEKEEEMDSQRGTVEECL  382 (532)
Q Consensus       303 ~~~s~~C~~~v~~~~~~~~~Dyrl~p~L~~ACk~di~~~C~~~~~~~~~~~~~~g~v~~Cc~~~~~~~~~~~~~~V~~CL  382 (532)
                      ..||+.|..+|.....+.+-||||||.|+.+|+.+|..+|.++...                       .++.|+|++||
T Consensus       978 ~~~S~~C~~~i~~~I~Es~~D~~LDP~L~~~C~~~I~~~CA~~~~s-----------------------~~~~~~V~ECL 1034 (1179)
T KOG3648|consen  978 QRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEEAAA-----------------------QEQTGQVEECL 1034 (1179)
T ss_pred             hhcCcchHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHHh-----------------------ccccchHHHHH
Confidence            9999999999999999999999999999999999999999887643                       46789999999


Q ss_pred             HHHHhhcccCCHhHHHHHHHHHHhccccccCChHHHHhcHHHHHhhcccCCCCCchHHHHHHHHHhccccCCccchHhHH
Q psy13980        383 KRALVAGKIRDRACREEVAALIEEGRADINVDPLLHAACSLDLTKYCADVAPGNGRQLMCLEELARRDRADGVSLQEQCK  462 (532)
Q Consensus       383 k~~~~~~~~~~~~C~~ev~~~l~e~~~Di~lDP~L~~aC~~Di~~~C~~v~~G~Grvl~CL~~~l~~~~~~~~~L~~~C~  462 (532)
                      |.+|  .+|.++.|.+||+++|+|+.+||++||+|++||+-||++||++++||+||++.||++.+++.   +..|+++|+
T Consensus      1035 K~~~--~KIr~~~C~~~V~~~L~ES~~DI~~DPVLH~ACAmDI~~~C~~i~PG~~R~~~CLM~s~~~~---~~~L~~EC~ 1109 (1179)
T KOG3648|consen 1035 KVNL--LKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCAAITPGRGRQMSCLMEALEDK---RVRLQPECK 1109 (1179)
T ss_pred             HHhH--HHHhHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHhh---hhhhCHHHH
Confidence            9999  56889999999999999999999999999999999999999999999999999999999987   889999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhccccccc-hhhhhcC
Q psy13980        463 TMLLARIDMFRNAEALISAPSSLQDMYGAVQRSPARRYLAGLLISIVGVIFLMGLVCGRVANR-SAAAKRK  532 (532)
Q Consensus       463 ~~L~~r~~~~~~a~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~g~~~gr~t~r-~~~~k~~  532 (532)
                      +.|.+|++||+||++|+ ||+||++|+++||+||+|||||++|+|||+||||+|++||||||| ++|||||
T Consensus      1110 ~rL~DR~~mW~~A~~~A-~~D~~~~~A~~VM~~P~rN~IL~~isG~I~~i~LIG~~CGRisKr~~~EmK~R 1179 (1179)
T KOG3648|consen 1110 KRLNDRIEMWSYAAKVA-PADGFSDLAMQVMTSPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179 (1179)
T ss_pred             hhhhhHHHHHHHHHhcC-CCccHHHHHHHHHcCcccchhHHHHhhHHHHHHHHHHHhccchHHHHHHhccC
Confidence            99999999999999999 999999999999999999999999999999999999999999999 9999998



>KOG3648|consensus Back     alignment and domain information
>PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines Back     alignment and domain information
>PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 85/525 (16%), Positives = 169/525 (32%), Gaps = 150/525 (28%)

Query: 3   LPELKPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIHRYCDDELRVSFRDSTRDVMDCL 62
           L   +      V NF    VQD+  + L  +   H+I    D          T  +   L
Sbjct: 22  LSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSG------TLRLFWTL 71

Query: 63  VQHKNSPELRGEPKCRQSIEHF-QLVTAGDYRFTV-AFKEACKHHAMRYCPTSRTKAKVI 120
                    + E    + ++ F + V   +Y+F +   K   +       P+  T+   I
Sbjct: 72  -------LSKQE----EMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTR-MYI 113

Query: 121 ECLSTIITNDTLSDARFRIPR-NCRQQVRSQLLQQRENFDLDPVL-------KTSCAQDV 172
           E    +  ND    A++ + R     ++R  LL+ R   ++  ++       KT  A DV
Sbjct: 114 EQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDV 170

Query: 173 AKFCPGVERGEAQVLECLLEHKAAVSMKCHKALFHIEQQDLGDSSSDYALLSTCKPMIKF 232
                      +  ++C ++             F I   +L + +S   +L         
Sbjct: 171 CL---------SYKVQCKMD-------------FKIFWLNLKNCNSPETVL--------- 199

Query: 233 YCYDEEPAKTLTCLKRMKCHKALFHIEQQDLGDSSSDYAL-LNTCKPMIKFYCYDEEPAK 291
                E  + L        ++           D SS+  L +++ +  ++     +    
Sbjct: 200 -----EMLQKL-------LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 292 TLTCLKRYKDS---PSFEEKCKLLVIKRMIEQNEDYRFNPELMKACKPDMSKYCVT--VM 346
            L  L   +++    +F   CK+L+  R                          VT  + 
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR--------------------FKQ---VTDFLS 282

Query: 347 AHQPQDSELEGKIQGLCEMEKEE------EMDSQRGTVEEC----LKRALVAGKIRDRAC 396
           A       L+     L   E +       +   Q    E       + +++A  IRD   
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 397 R---------EEVAALIEEGRADINV-DPLLHAACSLDLTKYCADVA-PGNGRQLMCL-- 443
                     +++  +IE   + +NV +P  +      L+ +      P     L+ L  
Sbjct: 343 TWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIW 396

Query: 444 EELARRDRADGVSLQEQCKTMLLARIDMFRNAEALISAPSSLQDM 488
            ++ + D    V + +  K  L+ +    +  E+ IS PS   ++
Sbjct: 397 FDVIKSD--VMVVVNKLHKYSLVEK----QPKESTISIPSIYLEL 435


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
1afo_A40 Glycophorin A; integral membrane protein, transmem 85.55
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A Back     alignment and structure
Probab=85.55  E-value=0.48  Score=32.92  Aligned_cols=26  Identities=19%  Similarity=0.515  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhccccccc
Q psy13980        500 YLAGLLISIVGVIFLMGLVCGRVANR  525 (532)
Q Consensus       500 ~~~~~~~~~~~~~~~~g~~~gr~t~r  525 (532)
                      .||++.++++|.|+++..+-+|++|+
T Consensus        15 II~~vmaGiIG~IllI~y~I~rl~Kk   40 (40)
T 1afo_A           15 IIFGVMAGVIGTILLISYGIRRLIKK   40 (40)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            47889999999999999999999884




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00