Psyllid ID: psy14007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPED
Secondary Structure (PSIPRED)
ccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
NERLLIHWAALSGREDVVDFLLknkspvdpkddtnrtPLILAAAAGKLEIVRLLISngadvnakadgghsaLQYACSKGWKEIAELLIHNHanvniqdvrgatplhraasqgITPVVKLLLTQrldidvnitdaygntplhyaceekRLTDAKLLVRCGArldiqnkekktpldllplphlAQALTeiepivgdlped
Flexible Loop (DISEMBL)
nerllihwaalsgredVVDFLLKNkspvdpkddtnrTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARldiqnkekktpldllplPHLAqalteiepivgdlped
Low Complexity Region (SEG)
NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPED
Disordered region (IsUnstruct)
***LLIHWAALSGREDVVDFLLK*************TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI*******
Disordered Region (DISOPRED)
NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG*****
Disordered Region (DISEMBL)
NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPED
Disordered Region (DISPRO)
*ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9Z2X3	231	26S proteasome non-ATPase	yes	N/A	0.873	0.748	0.457	8e-35
O75832	226	26S proteasome non-ATPase	yes	N/A	0.873	0.765	0.451	1e-34
Q9Z2X2	231	26S proteasome non-ATPase	yes	N/A	0.873	0.748	0.451	2e-34
Q54HW1	232	26S proteasome non-ATPase	yes	N/A	0.868	0.741	0.386	4e-25
Q4UMH6	1179	Putative ankyrin repeat p	yes	N/A	0.843	0.141	0.390	1e-24
Q505D1	1053	Serine/threonine-protein	no	N/A	0.914	0.171	0.373	2e-22
Q502K3	1071	Serine/threonine-protein	no	N/A	0.858	0.158	0.369	2e-22
O15084	1053	Serine/threonine-protein	no	N/A	0.914	0.171	0.373	4e-22
Q8UVC1	1021	Inversin OS=Danio rerio G	no	N/A	0.843	0.163	0.397	1e-21
Q5ZLC8	1073	Serine/threonine-protein	no	N/A	0.858	0.158	0.358	3e-20

>sp|Q9Z2X3|PSD10_RAT 26S proteasome non-ATPase regulatory subunit 10 OS=Rattus norvegicus GN=Psmd10 PE=2 SV=1

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 114/175 (65%), Gaps = 2/175 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNEKDDAGWSPLHIAASAGRDEIVKALLIKGAQ 98

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G +AL YA SK   EIA +L+   AN + ++   AT +HRAA++G   +V +L
Sbjct: 99  VNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKNHYDATAMHRAAAKGNLKMVHIL 158

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct: 159 LFYK--ASTNIQDTEGNTPLHLACDEERVEEAKLLVTQGASIYIENKEEKTPLQV 211

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.
Rattus norvegicus (taxid: 10116)

>sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   ++ +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct: 159 LYYK--ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

Acts as an proto-oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Homo sapiens (taxid: 9606)

>sp|Q9Z2X2|PSD10_MOUSE 26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=3

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 2/175 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   +V +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AK LV  GA + I+NKE+KTPL +
Sbjct: 159 LFYK--ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Mus musculus (taxid: 10090)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 4/176 (2%)

Query: 1   NERLLIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
           +ER  +HWAA  G+  V  +L+ N K   +  DD   TPL  A +AG   +V+LL+  GA
Sbjct: 45  DERTPLHWAAAKGQISVAQYLMDNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGA 104

Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
           D N   D   + L YA SKG  +I +LL+  H   N +D  G+ P+HRA+S G    V+ 
Sbjct: 105 DPNTVNDSKRTPLHYASSKGRSDIVDLLL-THGAKNRKDDTGSAPIHRASSNGSVATVER 163

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           LL  + + ++N T+  G+TPLH A E       + L++ GA   I+NK+ KTP+D+
Sbjct: 164 LL--KGEANINSTNNEGDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPIDM 217

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 2/169 (1%)

Query: 5    LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
            ++H+AA SG  ++V++L+KNK+ +  K ++  T L  AA +G L +V LLI NG D+N K
Sbjct: 934  ILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAESGNLNLVSLLIHNGTDINTK 993

Query: 65   ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
             D G +AL YA   G   +  LLIH   +VN +   G T LH A   G   +V LL+ + 
Sbjct: 994  TDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGETILHFAVDLGSLDLVSLLMVRG 1053

Query: 125  LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             D++    D  G T LHYA E   L    LL+  GA ++ +N   +TPL
Sbjct: 1054 ADVNAKTDD--GLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPL 1100

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 12/193 (6%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA +      + L+   S V+  D   RT L  AA +G  E+V+LL+S GA++NA  
Sbjct: 111 LHIAAANKAVKCAESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFD 170

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
                A+ +A   G  E+ +LL+ + A V  +D +  TPLH AAS G+  VVK LL   L
Sbjct: 171 KKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLD--L 228

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQAL 185
            +D+N  +AYGNTPLH AC   +      L+ CGA ++ +N++  TPL      H A A 
Sbjct: 229 GVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPL------HFAAAS 282

Query: 186 TE----IEPIVGD 194
           T     +E +VG+
Sbjct: 283 THGALCLELLVGN 295

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 3/173 (1%)

Query: 2   ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
           +R  IHWAA  G  +VV  L+   S    KD    TPL  AAA+G +++V+ L+ NGA++
Sbjct: 173 DRQPIHWAAYLGHLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEI 232

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA-SQGITPVVKLL 120
           +     G++AL  AC  G + +A  L++  ANVN  + RG TPLH AA S      ++LL
Sbjct: 233 DEPNAFGNTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELL 292

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           +      DVN+    G +PLH A    R T +++L++ G  +D  ++   TPL
Sbjct: 293 VNN--GADVNMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPL 343

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 12/193 (6%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA +      + L+   S V+  D   RT L  AA +G  E+V+LL+S GA++NA  
Sbjct: 111 LHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFD 170

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
                A+ +A   G  E+ +LL+ + A V  +D +  TPLH AAS G+  VVK LL   L
Sbjct: 171 KKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLD--L 228

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQAL 185
            +D+N  +AYGNTPLH AC   +      L+ CGA ++ +N++  TPL      H A A 
Sbjct: 229 GVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPL------HFAAAS 282

Query: 186 TE----IEPIVGD 194
           T     +E +VG+
Sbjct: 283 THGALCLELLVGN 295

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q8UVC1|INVS_DANRE Inversin OS=Danio rerio GN=invs PE=2 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 88/171 (51%), Gaps = 4/171 (2%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AALSG    V  LL+    VDP D    TPL  A   G  +++  LI  GA V+   
Sbjct: 354 LHAAALSGHVSTVRLLLEQGGMVDPLDVMKHTPLFRACEMGHRDVILTLIKGGARVDLVD 413

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             GHSAL +A   G  E+ E+L+ N  + N+QD  G TPL  AA  G    + LL+    
Sbjct: 414 IDGHSALHWAALGGNAEVCEVLMENGISPNLQDQAGRTPLQCAAYAGYINCMALLIQH-- 471

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI--QNKEKKTPLD 174
           D D NI D  G T LH++C    L   KLL+ CGA  +     +E+ TPLD
Sbjct: 472 DADPNIQDKEGRTALHWSCNNGYLDAVKLLLGCGAFPNHMEHTEERYTPLD 522

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling.

Danio rerio (taxid: 7955)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 3/173 (1%)

Query: 2   ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
           +R  IHWAA  G  +V+  L+   + V  KD    T L  AAA+G++E+VR L+  G ++
Sbjct: 173 DRQPIHWAAFLGHLEVLKLLVARGADVMCKDKKGYTLLHTAAASGQIEVVRHLLRLGVEI 232

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA-SQGITPVVKLL 120
           +     G++AL  AC  G   +A  L++  ANVN  + +G TPLH AA S      ++LL
Sbjct: 233 DEPNSFGNTALHIACYMGQDAVANELVNYGANVNQPNEKGFTPLHFAAVSTNGALCLELL 292

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           +      DVN     G +PLH A    R T +++L++ G+ +D  +K   TPL
Sbjct: 293 VNN--GADVNFQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKYGNTPL 343

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
242024617	227	26S proteasome non-ATPase regulatory sub	0.883	0.770	0.565	1e-52
380023189	226	PREDICTED: 26S proteasome non-ATPase reg	0.949	0.831	0.582	4e-52
328790489	226	PREDICTED: 26S proteasome non-ATPase reg	0.949	0.831	0.576	1e-51
307214548	230	26S proteasome non-ATPase regulatory sub	0.949	0.817	0.566	4e-50
332019193	229	26S proteasome non-ATPase regulatory sub	0.949	0.820	0.571	7e-50
383850894	223	PREDICTED: 26S proteasome non-ATPase reg	0.949	0.843	0.555	9e-50
350412850	224	PREDICTED: 26S proteasome non-ATPase reg	0.949	0.839	0.539	3e-49
340711726	224	PREDICTED: 26S proteasome non-ATPase reg	0.949	0.839	0.539	7e-49
307182368	233	26S proteasome non-ATPase regulatory sub	0.949	0.806	0.552	6e-48
328696537	224	PREDICTED: 26S proteasome non-ATPase reg	0.883	0.781	0.553	6e-48

>gi|242024617|ref|XP_002432723.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212518208|gb|EEB19985.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 134/175 (76%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           NERLLIHWA+L G   +V +L++  SPVD  DD   TPLILA++A KL++V LLI  GA+
Sbjct: 37  NERLLIHWASLGGFPQIVKYLIEMNSPVDSPDDIGMTPLILASSANKLQVVELLIEKGAN 96

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VN++ + GHS++QYA SKGWK+I ELLI N A+VNI D R ATPLHRAAS+G   ++ LL
Sbjct: 97  VNSQNNEGHSSIQYAASKGWKQILELLIKNGADVNIMDKRRATPLHRAASKGDVGIINLL 156

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L+   ++D+N++D YGNTPLH ACE      AK+L++ GA++D++NKE+KTPL+L
Sbjct: 157 LSLGKNLDINVSDVYGNTPLHLACEGNNFEAAKILIQKGAQIDVKNKEEKTPLEL 211

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023189|ref|XP_003695408.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Apis florea]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 134/189 (70%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V FLL    PVDP DDT+ TPLILAA+AG+ ++V  L+  GA 
Sbjct: 35  NGRMLIHWAALGGHDDLVRFLLSLDVPVDPTDDTDMTPLILAASAGREKVVNTLLIEGAY 94

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNAK   GHSALQYA SK WK I   L+   ANVNI D RGATPLHRAAS+G   +VKLL
Sbjct: 95  VNAKTQEGHSALQYAASKNWKSICAALLEKDANVNITDNRGATPLHRAASKGNIAIVKLL 154

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +    ++D++  DA GN+ LH ACEE R+ +AKLLV+ GA   ++NK+KKTPLD L  P 
Sbjct: 155 IEYGRNLDIDSKDADGNSALHLACEENRVDEAKLLVQNGASTTLKNKQKKTPLD-LATPR 213

Query: 181 LAQALTEIE 189
           L Q L EIE
Sbjct: 214 LVQQLKEIE 222

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790489|ref|XP_624339.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Apis mellifera]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 134/189 (70%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V +LL    PVDP DDT+ TPLILAA+AG+ ++V  L+  GA 
Sbjct: 35  NGRMLIHWAALGGHDDLVRYLLSLDVPVDPTDDTDMTPLILAASAGREKVVNTLLIEGAY 94

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNAK   GHSALQYA SK WK I   L+   ANVNI D RGATPLHRAAS+G   +VKLL
Sbjct: 95  VNAKTQEGHSALQYAASKNWKSICAALLEKDANVNITDNRGATPLHRAASKGNIAIVKLL 154

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +    ++D++  DA GN+ LH ACEE R+ +AKLLV+ GA   ++NK+KKTPLD L  P 
Sbjct: 155 IEYGRNLDIDSKDADGNSALHLACEENRVDEAKLLVQNGASTTLKNKQKKTPLD-LATPR 213

Query: 181 LAQALTEIE 189
           L Q L EIE
Sbjct: 214 LVQQLKEIE 222

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214548|gb|EFN89533.1| 26S proteasome non-ATPase regulatory subunit 10 [Harpegnathos saltator]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 107/189 (56%), Positives = 134/189 (70%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V  LL    PV+P DDT+ TPLILAA+AG+ ++V  L++ GA+
Sbjct: 37  NGRMLIHWAALGGHDDLVRHLLSLDVPVNPTDDTDMTPLILAASAGREKVVNTLLNEGAN 96

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    GHSALQYA SK WK I   L+   A+VNI D RGATPLHR+AS+G T +VKLL
Sbjct: 97  VNATTVDGHSALQYAASKNWKSICVALLEKDADVNIADKRGATPLHRSASKGNTAIVKLL 156

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +     ++++  D YGNTPLH ACEE R+ +AKLL   GA L I NKE+KTPLD L  P 
Sbjct: 157 IEYGKSLNIDRRDVYGNTPLHLACEENRVEEAKLLAANGADLTITNKERKTPLD-LAAPG 215

Query: 181 LAQALTEIE 189
           LA+ L EI+
Sbjct: 216 LARQLEEIK 224

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019193|gb|EGI59703.1| 26S proteasome non-ATPase regulatory subunit 10 [Acromyrmex echinatior]

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 133/189 (70%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V  LL    PVDP DDTN TPLILAA+AG+ ++V  L++ GA+
Sbjct: 36  NGRMLIHWAALGGHDDLVRHLLSLDVPVDPADDTNMTPLILAASAGREKVVNTLLTEGAN 95

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    GHSALQYA SK WK I   L+   A+VNI D RGATPLHR+AS+G   +V+LL
Sbjct: 96  VNATTIDGHSALQYAASKNWKSICVALLEKDADVNITDKRGATPLHRSASKGNITIVELL 155

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           L     ++++  DAYGNTPLH ACEE R+ +AKLL   GA L I NKE+KTPLDL  L  
Sbjct: 156 LECGKKLNIDQRDAYGNTPLHLACEENRVEEAKLLTAHGADLTITNKERKTPLDLASLG- 214

Query: 181 LAQALTEIE 189
           L + L EI+
Sbjct: 215 LVRQLEEIK 223

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850894|ref|XP_003701009.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Megachile rotundata]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 137/189 (72%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +++V +LL    PVDP DD + TPLILAA+AG+ ++V+ L++ GA+
Sbjct: 34  NGRMLIHWAALGGHDELVRYLLSLAVPVDPTDDMDMTPLILAASAGREKVVKTLLTEGAN 93

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNAK   GHSALQYA SK WK I   L+   A+VNI D RGATPLHRAAS+G   +VKLL
Sbjct: 94  VNAKTQDGHSALQYAASKNWKSICVALLEKDADVNITDKRGATPLHRAASKGNIAIVKLL 153

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +    ++ ++  DA GNTPLH ACEE R+ +AKLLV+ GA L ++NKE+KTPLDL  +  
Sbjct: 154 IECGKNLKIDSKDADGNTPLHLACEENRVDEAKLLVKNGANLLLKNKEEKTPLDLASVS- 212

Query: 181 LAQALTEIE 189
           L + L E+E
Sbjct: 213 LVRHLKELE 221

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412850|ref|XP_003489787.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Bombus impatiens]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 133/189 (70%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V +LL    PVDP DD + TPLILAA+AG+ ++V +L++ GA+
Sbjct: 35  NSRMLIHWAALGGHDDLVRYLLSLDVPVDPTDDMDMTPLILAASAGREKVVNILLNEGAN 94

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNAK   GHSALQYA SK WK I   L+   A +NI D RGATPLHRAAS+G   +VKLL
Sbjct: 95  VNAKTQEGHSALQYAASKNWKSICVALLEKDAYINITDKRGATPLHRAASKGNIAIVKLL 154

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +    ++D++  D  GN+ LH ACEE R+ +AKLLV+ GA   + NK+KKTPLDL   P 
Sbjct: 155 IEYGRNLDIDSKDVDGNSALHLACEENRVDEAKLLVKNGATTTLMNKQKKTPLDLAS-PG 213

Query: 181 LAQALTEIE 189
           L + L E++
Sbjct: 214 LVRQLKELQ 222

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711726|ref|XP_003394421.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Bombus terrestris]

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 133/189 (70%), Gaps = 1/189 (0%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V +LL    PVDP DD + TPLILAA+AG+ ++V +L++ GA+
Sbjct: 35  NNRMLIHWAALGGHDDLVRYLLSLDVPVDPTDDMDMTPLILAASAGREKVVNILLNEGAN 94

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNAK   GHSALQYA SK WK I   L+   A +NI D RGATPLHRAAS+G   +VKLL
Sbjct: 95  VNAKTQEGHSALQYAASKNWKSICVALLEKDAYINIIDKRGATPLHRAASKGNIAIVKLL 154

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +    ++D++  D  GN+ LH ACEE R+ +AKLLV+ GA   + NK+KKTPLDL   P 
Sbjct: 155 IEYGRNLDIDSKDVDGNSALHLACEENRVDEAKLLVKNGATTTLMNKQKKTPLDLAS-PG 213

Query: 181 LAQALTEIE 189
           L + L E++
Sbjct: 214 LVRQLKELQ 222

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182368|gb|EFN69631.1| 26S proteasome non-ATPase regulatory subunit 10 [Camponotus floridanus]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 134/192 (69%), Gaps = 4/192 (2%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N R+LIHWAAL G +D+V  LL    PVDP DDT+ TPLILA++AG+ ++V  L++ GA+
Sbjct: 37  NGRMLIHWAALGGHDDLVRHLLSLDVPVDPVDDTDMTPLILASSAGREKVVNTLLTEGAN 96

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    GHSALQYA SK WK I   L+   A+VNI D RGATPLHR+AS+G   +V+LL
Sbjct: 97  VNAMTIDGHSALQYAASKNWKSICVALLDKGADVNIADKRGATPLHRSASKGNIAIVELL 156

Query: 121 LTQRLDIDV---NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP 177
           +     +++   N  DAYGNTPLH ACEE R+ +AKLLV  GA L I N+E+KTPLDL  
Sbjct: 157 IEHGKKLNIGSGNQRDAYGNTPLHLACEENRVEEAKLLVTRGADLAITNRERKTPLDLAS 216

Query: 178 LPHLAQALTEIE 189
            P L + L EI+
Sbjct: 217 -PGLVRELEEIK 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696537|ref|XP_001948769.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Acyrthosiphon pisum]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 124/177 (70%), Gaps = 2/177 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N RLL+HWAAL G + +V +LL+N  P D +DD   TPLILAA+ G+++ V+ LI  G +
Sbjct: 40  NNRLLLHWAALGGHDRLVRYLLENGQPEDSRDDMQTTPLILAASGGRIDTVKTLIEYGVN 99

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           +NAK + GHSALQYA SKGW EI   L+   A+V+I D RGATPLHR AS+G   V+K+L
Sbjct: 100 INAKNEEGHSALQYAASKGWTEIVRYLVSKGADVDIADNRGATPLHRCASKGNMSVLKIL 159

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP 177
           L    DI VN  D YGNTPLH ACEE R+ +A LL++ GA + + NKEK TP DL P
Sbjct: 160 LD--CDIHVNARDNYGNTPLHLACEEGRVQEAGLLIKSGADITLINKEKLTPFDLAP 214

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.873	0.765	0.468	2.2e-34
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.873	0.765	0.451	2.2e-34
UNIPROTKB|E2RA22	226	PSMD10 "Uncharacterized protei	0.873	0.765	0.451	2.2e-34
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.873	0.748	0.457	2.2e-34
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.863	0.904	0.468	5.8e-34
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.873	0.748	0.451	7.4e-34
TAIR|locus:2063804	240	AT2G03430 "AT2G03430" [Arabido	0.843	0.695	0.437	1.5e-28
WB|WBGene00185078	240	F40G9.17 [Caenorhabditis elega	0.934	0.770	0.408	3.1e-28
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.868	0.741	0.386	2.5e-26
ASPGD|ASPL0000061746	237	AN1209 [Emericella nidulans (t	0.883	0.738	0.368	7.8e-23

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 82/175 (46%), Positives = 111/175 (63%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
             + R  +HWA  +G  ++  FLL     VD KDD   TPL +AA+AG+ EIVR LIS GA 
Sbjct:    39 DSRTALHWACSAGHVNIAQFLLDLGVEVDLKDDACWTPLHIAASAGREEIVRSLISKGAQ 98

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             +N+    G + L YA SK   EIA++L+ N A+ N  D   +TPLHRA+++G   +++LL
Sbjct:    99 LNSVNQNGCTPLHYAASKNLYEIAQILLENGADPNATDKLQSTPLHRASAKGNYRLIQLL 158

Query:   121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             L +      NI D+ GNTPLH AC+E+R   AKLLV  GA + I+NKEK TPL +
Sbjct:   159 LKE--SASTNIQDSEGNTPLHLACDEERAEAAKLLVEHGASIYIENKEKMTPLQV 211

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 79/175 (45%), Positives = 113/175 (64%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
             + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct:    39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   ++ +L
Sbjct:    99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158

Query:   121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct:   159 LYYKAS--TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|E2RA22 PSMD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 79/175 (45%), Positives = 113/175 (64%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
             + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct:    39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   ++ +L
Sbjct:    99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158

Query:   121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct:   159 LYYKAS--TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 80/175 (45%), Positives = 114/175 (65%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
             + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct:    39 DSRTALHWACSAGHTEIVEFLLQLGVPVNEKDDAGWSPLHIAASAGRDEIVKALLIKGAQ 98

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             VNA    G +AL YA SK   EIA +L+   AN + ++   AT +HRAA++G   +V +L
Sbjct:    99 VNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKNHYDATAMHRAAAKGNLKMVHIL 158

Query:   121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct:   159 LFYKAS--TNIQDTEGNTPLHLACDEERVEEAKLLVTQGASIYIENKEEKTPLQV 211

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 81/173 (46%), Positives = 111/173 (64%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
             + R  +HWA  +G   V D LL    PV  KDD   TPL +AA+AG+ EIV+ LI  GA 
Sbjct:     2 DSRTALHWACSAGHAAVADLLLGLGVPVGDKDDAGWTPLHIAASAGRDEIVKALIDKGAP 61

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             +NA    G + L YA SK  +EIA +L+ N A+ +  D   +TPLHRAA++G   ++++L
Sbjct:    62 INAVNQNGCTPLHYAASKNKQEIAIMLLENGADPDATDHFESTPLHRAAAKGNLKMIQIL 121

Query:   121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             L  R +  VNI D+ GNTPLH AC+E+R+ +AKLLV  GA +  +NKE+ TPL
Sbjct:   122 L--RHNASVNIQDSEGNTPLHLACDEERVDEAKLLVSHGASIHTENKEELTPL 172

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 79/175 (45%), Positives = 112/175 (64%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
             + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct:    39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   +V +L
Sbjct:    99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

Query:   121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             L  +     NI D  GNTPLH AC+E+R+ +AK LV  GA + I+NKE+KTPL +
Sbjct:   159 LFYKAS--TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

TAIR|locus:2063804 AT2G03430 "AT2G03430" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:     3 RLLIHWAALSGREDVVDFLLKN---KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
             R L+H AA  G   +V  L  +   K+ ++ KDD    PL  AA+ G  E+V +L++ GA
Sbjct:    48 RSLLHVAASFGHSQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGA 107

Query:    60 DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
             DVNAK +GG +AL YA SKG  EIA+LL+ + A +NI D  G TPLHRAAS G   V + 
Sbjct:   108 DVNAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEF 167

Query:   120 LLTQRLDIDVNITDAYGNTPLHYA--CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             L+ +  +ID   TD  G T L ++  C++K++  A LL+R GA +D+++KE  T L
Sbjct:   168 LIEEGAEIDA--TDKMGQTALMHSVICDDKQV--AFLLIRHGADVDVEDKEGYTVL 219

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007140 "male meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

WB|WBGene00185078 F40G9.17 [Caenorhabditis elegans (taxid:6239)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 78/191 (40%), Positives = 113/191 (59%)

Query:     3 RLLIHWAALSGREDVVDFLLKNKSPVDPK-DDTNRTPLILAAAAGKLEIVRLLIS-NGAD 60
             R  IH+AA+ G   ++ F + N   +  K DD   TPL++A++AG++++VR L++    D
Sbjct:    51 RSTIHFAAVGGSLPLLQFAILNDPEMAHKTDDLGWTPLMIASSAGRVDVVRYLLTLPDVD 110

Query:    61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANV-NIQDVRGATPLHRAASQGITPVVKL 119
             V        ++L YACSK   EI +LLI    N+ N+ D  GAT LHRAAS+G   +V+ 
Sbjct:   111 VKHTNSNKQTSLHYACSKNHVEIVKLLIEADPNIINLPDKFGATALHRAASRGNDVIVRA 170

Query:   120 LL-TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL 178
             L+ T +  +D    D  GNT LH AC+E R   A LLV  GA + + NKEK+TPL++L  
Sbjct:   171 LVSTGKCSLDRQ--DGEGNTALHLACDENRGDVAILLVNRGADMKMLNKEKQTPLEMLKD 228

Query:   179 PHLAQALTEIE 189
             P L Q L  ++
Sbjct:   229 PELRQKLLNLK 239

GO:0040010 "positive regulation of growth rate" evidence=IMP

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 68/176 (38%), Positives = 100/176 (56%)

Query:     1 NERLLIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
             +ER  +HWAA  G+  V  +L+ N K   +  DD   TPL  A +AG   +V+LL+  GA
Sbjct:    45 DERTPLHWAAAKGQISVAQYLMDNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGA 104

Query:    60 DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
             D N   D   + L YA SKG  +I +LL+  H   N +D  G+ P+HRA+S G    V+ 
Sbjct:   105 DPNTVNDSKRTPLHYASSKGRSDIVDLLL-THGAKNRKDDTGSAPIHRASSNGSVATVER 163

Query:   120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             LL  + + ++N T+  G+TPLH A E       + L++ GA   I+NK+ KTP+D+
Sbjct:   164 LL--KGEANINSTNNEGDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPIDM 217

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000061746 AN1209 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 67/182 (36%), Positives = 98/182 (53%)

Query:     1 NERLLIHWAALSGREDVVDFLLKNKSPVDP--KDDTNRTPLILAAAAGKLE---IVRLLI 55
             ++RL IHWA       +V+ L+  K   DP  +D +  TPL++AA+    E   I+ LL+
Sbjct:    39 DDRLPIHWAVAYNHLPIVELLVSTKD-FDPDVEDGSCWTPLMIAASLRNAEGDPIIELLL 97

Query:    56 SNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP 115
               GADVNAK+  G +AL +A SK        L+ N  +  ++D RG   LHRAA+ G TP
Sbjct:    98 RKGADVNAKSITGQNALHFATSKANITTVRTLLENKCSARVKDKRGQLALHRAAAIGSTP 157

Query:   116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             +++LLL +     VN TD  G T LH+A  E     A  L++ GA  D ++      +D+
Sbjct:   158 IIQLLLKEGRS-PVNATDNDGLTALHHAISEGHGDAALTLLKAGAEADKKDASGTLAIDM 216

Query:   176 LP 177
              P
Sbjct:   217 AP 218

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75832	PSD10_HUMAN	No assigned EC number	0.4514	0.8737	0.7654	yes	N/A
Q54HW1	PSD10_DICDI	No assigned EC number	0.3863	0.8686	0.7413	yes	N/A
Q10311	YD58_SCHPO	No assigned EC number	0.3551	0.8787	0.7435	yes	N/A
Q9Z2X3	PSD10_RAT	No assigned EC number	0.4571	0.8737	0.7489	yes	N/A
Q9Z2X2	PSD10_MOUSE	No assigned EC number	0.4514	0.8737	0.7489	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-29
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-21
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-17
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-15
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-14
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-13
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-12
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-09
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-09
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	6e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	6e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-06
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	3e-06
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	5e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-04
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  122 bits (308), Expect = 3e-36
 Identities = 62/128 (48%), Positives = 78/128 (60%), Gaps = 2/128 (1%)

Query: 29  DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
           + +D+  RTPL LAA+ G LE+V+LL+ NGADVNAK + G + L  A   G  EI +LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 89  HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR 148
              A+VN +D  G TPLH AA  G   VVKLLL  +   DVN  D  G TPLH A +   
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLL--KHGADVNARDKDGRTPLHLAAKNGH 118

Query: 149 LTDAKLLV 156
           L   KLL+
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  120 bits (302), Expect = 3e-35
 Identities = 56/117 (47%), Positives = 75/117 (64%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
            +H AA +G  +VV  LL+N + V+ KD+  RTPL LAA  G LEIV+LL+  GADVNA+
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
              G++ L  A   G  ++ +LL+ + A+VN +D  G TPLH AA  G   VVKLLL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (262), Expect = 4e-29
 Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           NA+ + G + L  A S G  E+ +LL+ N A+VN +D  G TPLH AA  G   +VKLLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            +    DVN  D  GNTPLH A     L   KLL++ GA ++ ++K+ +TPL L
Sbjct: 61  EK--GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  105 bits (264), Expect = 6e-27
 Identities = 63/183 (34%), Positives = 85/183 (46%), Gaps = 23/183 (12%)

Query: 14  REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK-----LEIVRLLISNGADVNAKADGG 68
             DVV  LL N + ++     N TPL   +          EIV+LL+  GA+VNA  + G
Sbjct: 47  NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106

Query: 69  HSALQYACSK--GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI--TPVVKLLLTQR 124
            + L YA SK      I E L+ N ANVNI++  G   LH           ++KLL+ + 
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166

Query: 125 LDID--------------VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK 170
           +DI+              +NI D YG TPLHYA         K L+  GA  ++ NK   
Sbjct: 167 VDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD 226

Query: 171 TPL 173
           TPL
Sbjct: 227 TPL 229

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 92.7 bits (231), Expect = 6e-25
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 2/93 (2%)

Query: 6  IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
          +H AA +G  ++V  LL+     D       T L LAA  G LEIV+LL+ +GADVNAK 
Sbjct: 1  LHLAAKNGNLELVKLLLEKG--ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
            G++AL  A   G  EI +LL+ + A++N++D
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.2 bits (209), Expect = 1e-21
 Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L LAA  G LE+V+LL+  GADVN       +AL  A   G  EI +LL+ + A+VN +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
             G T LH AA  G   +VKLLL      D+N+ D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL--EHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 22/165 (13%)

Query: 16  DVVDFLLKNKSPVDPKDDTNRTPLILAAAA--GKLEIVRLLISNGADVNAKADGGHSALQ 73
           ++V  LL+  + V+  D+   TPL+ A +       IV  L+ NGA+VN K   G + L 
Sbjct: 87  EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146

Query: 74  YA--CSKGWKEIAELLIHNHANVN----------------IQDVRGATPLHRAASQGITP 115
                +K   +I +LLI    ++N                I+DV G TPLH A       
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE 206

Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
            VK LL   L  + N+ + YG+TPLH A         KLL+  G 
Sbjct: 207 FVKYLL--DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 72  LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNI 131
           L  A   G  E+ +LL+   A+VN+ D    T LH AA  G   +VKLLL      DVN 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEH--GADVNA 56

Query: 132 TDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
            D  GNT LH A     L   KLL+  GA +++++
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 3   RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           +  +H+A   G  + +  L +  + V+ +DD    P+ +A      +I++LL+  GA  N
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
            K + G S L  A   G     +LLI +  ++  +   G TPLH A     +  ++LL+ 
Sbjct: 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLIN 243

Query: 123 QRLDIDVNITDAYGNTPLHYACE---EKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
                 +N  D  G+TPLH+A     +  + D  +L+   A + I++ + + P+D
Sbjct: 244 NA---SINDQDIDGSTPLHHAINPPCDIDIID--ILLYHKADISIKDNKGENPID 293

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 75.6 bits (185), Expect = 6e-17
 Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 10/155 (6%)

Query: 21  LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG- 79
            L     +  +D   R PL  AA+ G  +IV+LL+++GADVNAK   G + L  A   G 
Sbjct: 59  KLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGN 118

Query: 80  ----WKEIAELLIHNHA---NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNIT 132
                 E+A+LL+   A     N++D  G TPLH AA  G   +V+LLL    D   N  
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP--NSR 176

Query: 133 DAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
           ++YG T L  A +  R+   KLL+  G  L +   
Sbjct: 177 NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 77.2 bits (190), Expect = 9e-17
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 16  DVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQY 74
           ++   LL   + ++ KD     T L  A       +  LL+S GA+VN      +S L +
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT-PVVKLLLTQRLDIDVNITD 133
           A     K I  +L+ N A+ + +D  G TPLH +        ++KLLL     +DVN   
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH--GVDVNAKS 265

Query: 134 A-YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
              G T LH + + +R    KLL+  GA ++  N  K TPL
Sbjct: 266 YILGLTALHSSIKSERKL--KLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.3 bits (165), Expect = 4e-15
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 1  NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
          +    +H AA +G  ++V  LL++ + V+ KD    T L LAA  G LEIV+LL+ +GAD
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Query: 61 VNAK 64
          +N K
Sbjct: 87 INLK 90

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 72.3 bits (177), Expect = 4e-15
 Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 25/188 (13%)

Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD-------- 60
           A  SG   +V+  +K+ + ++  +     PL+ A   G  +I++LLI NG D        
Sbjct: 42  AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPC 101

Query: 61  ---------------VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
                          VN K     + L YA  KG  E  ++L    A+VNI+D  G  P+
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161

Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
           H A       ++KLLL +    +V   D  G +PLH A E       KLL+  G  +  +
Sbjct: 162 HIAIKHNFFDIIKLLLEKGAYANVK--DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Query: 166 NKEKKTPL 173
            K   TPL
Sbjct: 220 CKNGFTPL 227

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 72.0 bits (176), Expect = 6e-15
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           + + LL+  + V+ KD    TP+  AA  G  ++V LL+S GADVN  A    S L+ A 
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 77  SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYG 136
                +  + +I N +N+N  D+     L +A       +   LL       VN  D   
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLS----LLKAIRN--EDLETSLLLYDAGFSVNSIDDCK 273

Query: 137 NTPLHYACEEKRLTD--AKLLVRCGARLDIQNKEKKTPLDLL 176
           NTPLH+A +   L+    KLL R GA ++ +N + +TPL L+
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLM 314

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 4/159 (2%)

Query: 15  EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQY 74
           +D++  +L     V+ KD   +T L  A   G LE +++L   GADVN + D G   +  
Sbjct: 104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163

Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A    + +I +LL+   A  N++D  G +PLH AA  G    +KLL+     I     + 
Sbjct: 164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN- 222

Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
            G TPLH A    R +  +LL+   A ++ Q+ +  TPL
Sbjct: 223 -GFTPLHNAIIHNR-SAIELLIN-NASINDQDIDGSTPL 258

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.5 bits (169), Expect = 1e-14
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 8/130 (6%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKL-----EIVRLLI 55
           + RL +H AA  G + +V  LL + + V+ KD    TPL LAA  G       E+ +LL+
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131

Query: 56  SNGA---DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
             GA     N + + G++ L +A   G  +I ELL+   A+ N ++  G T L  AA  G
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191

Query: 113 ITPVVKLLLT 122
              +VKLLL 
Sbjct: 192 RIELVKLLLD 201

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 14  REDVVDFLLKNKSPVDPKDDTNRTPLIL-AAAAGKLEIVRLLISNGADVNAKADGGHSAL 72
            +D+V  LL+  + V+  +    TPL L    A  L++++LLI  GADVNAK   G + L
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121

Query: 73  Q-YACSKGWKE-IAELLIHNHANVNIQDVRGATPLH-RAASQGITP-VVKLLLTQRLDID 128
             Y         +  LL+   A+VN  D+ G TPL     S+     +++LL+      D
Sbjct: 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLI--DAGAD 179

Query: 129 VNITDAYGNTPLHYACEEKRLTDAKL--LVRCGARLDIQNKEKKTPLDLL 176
           V   D    + LH+  +  +     +  L+R G      +    TPL  +
Sbjct: 180 VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 21  LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
           ++      D        PL LA  A  +++V++L+ NGAD+N+      + L Y  +  +
Sbjct: 21  IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80

Query: 81  -----KEIAELLIHNHANVNIQDVRGATPLHRAASQ--GITPVVKLLLTQRLDIDVNITD 133
                KEI +LL+   ANVN  D  G TPL  A S+      +V+ LL      +VNI +
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG--ANVNIKN 138

Query: 134 AYGNTPLHYA--CEEKRLTDAKLLVRCGARLDIQNK 167
           + G   LH      +  L   KLL+  G  ++ +N+
Sbjct: 139 SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 68.5 bits (168), Expect = 7e-14
 Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 40  ILAAAAGKLEIVRLLISNGADVNAKADGG----HSALQYACSKGWKEIAELLIHNHANVN 95
           +L A+   +E VR L++ GADVN + + G    H  L Y+  K  K+I  LL+   A+VN
Sbjct: 19  LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKV-KDIVRLLLEAGADVN 77

Query: 96  IQDVRGATPLHRAASQGIT-PVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK- 153
             +  G TPLH       T  V+KLL+  +   DVN  D  G TPLH         + K 
Sbjct: 78  APERCGFTPLHLYLYNATTLDVIKLLI--KAGADVNAKDKVGRTPLHVYLSGFN-INPKV 134

Query: 154 --LLVRCGARLDIQNKEKKTPLDLL 176
             LL+R GA ++  +    TPL +L
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVL 159

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 66.0 bits (161), Expect = 6e-13
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
            A +G   +++ LLK K   D  D   RTPL +AA+ G  + V +L+ +  +V+ +   G
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG 591

Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
           ++AL  A S    +I  +L H  +  +         L  AA +     +K LL Q L++D
Sbjct: 592 NTALWNAISAKHHKIFRILYHFASISDPH--AAGDLLCTAAKRNDLTAMKELLKQGLNVD 649

Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN-KEKKTPLDLLPL 178
               D  G T L  A  E  +   +LL+  GA +D  N  +  +P +L  L
Sbjct: 650 SE--DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL 698

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 4   LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPL--ILAAAAGKLEIVRLLISNGADV 61
           L ++ +  +    V+  LL+  + V+  D    TPL  +L +    +E++RLLI  GADV
Sbjct: 121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV 180

Query: 62  NAKADGGHSALQYAC--SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP---V 116
            A  D   S L +     K    I   LI    +    D+ G TPLH  A+        V
Sbjct: 181 YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV 240

Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYA 143
           + LL+     I +N  + YG TPLHYA
Sbjct: 241 LPLLIA---GISINARNRYGQTPLHYA 264

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 25/81 (30%), Positives = 39/81 (48%)

Query: 16  DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYA 75
           + V++LL    P++ KD    TPL  A      E V+ L+  GA+ N     G + L  A
Sbjct: 173 NRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA 232

Query: 76  CSKGWKEIAELLIHNHANVNI 96
                KEI +LL++N  ++  
Sbjct: 233 ILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 5   LIHWAALSGRED--VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           L+H    S + D  ++  L+     ++ K+                  V  L+S G  +N
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPIN 186

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
            K   G + L YA      E  + L+   AN N+ +  G TPLH A       + KLLL 
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246

Query: 123 QRLDIDV 129
               I  
Sbjct: 247 NGPSIKT 253

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 21  LLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAKADGGHSALQYACS-K 78
           LL+  + V+ K+    TPL L A  G   E +R LI  GADVNA      + L  A +  
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352

Query: 79  GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNT 138
             K+I   L+   ANVN +D    TP+H AA +    ++  LL    DI+  ++   G T
Sbjct: 353 RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA-LSQKIG-T 410

Query: 139 PLHYA-CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
            LH+A C        K L+  GA ++ +NK+  TPL
Sbjct: 411 ALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPL 446

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H+A  +  + + + LL   + V+  D TN +PL  A       IV +L+ NGA  +A+ 
Sbjct: 172 LHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231

Query: 66  DGGHSALQYACSKGWK-EIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQ 123
             G++ L  +       +I +LL+ +  +VN +  + G T LH +        +KLLL  
Sbjct: 232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLL-- 287

Query: 124 RLDIDVNITDAYGNTPLHYA 143
               D+N  ++Y  TPL  A
Sbjct: 288 EYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 13/179 (7%)

Query: 6   IHWAALSGREDVVDFLLK-NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           +H A   G    V+ LL   K   D       TPL LA    KL+I++LLI+ GAD +  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
                S L  A   G  +  ELLI + A ++I+D  G TPL  A ++G   + K+L    
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML---- 187

Query: 125 LDIDVNITDAYGNTP----LHYACEEKRLTDAKLLVRCGARLDIQ---NKEKKTPLDLL 176
           LD   NI D +G       L YA E  ++   +L ++ GA  +I      E+ T LD++
Sbjct: 188 LDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMI 245

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 55/151 (36%), Positives = 71/151 (47%), Gaps = 7/151 (4%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
           K       L L  AA   E++  LI     + A+   G   L  A SKG  +I +LL+ +
Sbjct: 37  KKLNLYLELALLPAASLSELLLKLI-VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS 95

Query: 91  HANVNIQDVRGATPLHRAASQG-----ITPVVKLLLTQRLDIDVNIT-DAYGNTPLHYAC 144
            A+VN +D  G TPLH AA  G        V KLLL    D+DVN   D  GNTPLH+A 
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 145 EEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
                   +LL+  GA  + +N    T LD 
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 2  ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI 55
           R  +H AA+SGR ++V +LL+    ++  D+   T L +AA  G LE+++LL+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 7/144 (4%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHA-- 92
           ++  L  A   G+L+I R L+  G + N +   G S ++ A      E  +LL+ + A  
Sbjct: 2   DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP 61

Query: 93  NVNIQDVRGATPLHRAASQG-ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
           +V   D+   + LH A  +G +  V +LL   +   DV   D  G TPLH A   K+L  
Sbjct: 62  DVKYPDIE--SELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDI 117

Query: 152 AKLLVRCGARLDIQNKEKKTPLDL 175
            KLL+  GA  DI N +K +PL L
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHL 141

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           ++  A  S   D +  ++ N+S ++  D      L+ A     LE   LL   G  VN+ 
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNINKND----LSLLKAIRNEDLETSLLLYDAGFSVNSI 269

Query: 65  ADGGHSALQYAC-SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI-TPVVKLLLT 122
            D  ++ L +A  +     +   L+   A+VN ++++G TPL+  A  G  T  ++ L+ 
Sbjct: 270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM 329

Query: 123 QRLDIDVNITDAYGNTPLHYACEEKRLTDAKL-LVRCGARLDIQNKEKKTPL 173
             L  DVN  D    TPLH A    R  D  + L+  GA ++ ++   KTP+
Sbjct: 330 --LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Length = 682

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 16  DVVDFLLKNKSPVDPKDDTNRTPL--ILAAAA---GKLEIVRLLISNGADVNAKADGGHS 70
           D+V   +   + V+  D+   TPL  IL+        L+IV++LI NGAD+N K   G +
Sbjct: 52  DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111

Query: 71  ALQYACSKGW---KEIAELLIHNHANVNIQDVRGATPL--HRAASQGI-TPVVKLLLTQR 124
            L    S G+    EI   +I N A+  + D  G T L  +  ++  I   ++KLLL + 
Sbjct: 112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG 171

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTD------AKLLVRCGARLDIQNKE-KKTPLDLL 176
           +DI+    +      LH  C  K   D       KL V  G  ++ +NK  KK  ++ L
Sbjct: 172 VDINT-HNNKEKYDTLH--CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYL 227

Length = 489

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
           LH AA  G   +VKLLL +  D+++  TD    T LH A     L   KLL+  GA ++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 165 QNKEKKTPL 173
           ++K+  T L
Sbjct: 57  KDKDGNTAL 65

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 86  LLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
           LL H   ++N  D  G TPLH AA  G   +V+ LL   +D+  N+ D+ G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL--NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 28  VDPKDDTNRTPLILAAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGW-KEIAE 85
           V+  DD   TPL  A+ A  L  +V  L+  GADVNAK   G + L      G+  E   
Sbjct: 266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIR 325

Query: 86  LLIHNHANVNIQDVRGATPLHRAAS--QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
            LI   A+VN  D    TPLH+A++  +    V+ LL    L  +VN  D    TP+HYA
Sbjct: 326 TLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL---ELGANVNARDYCDKTPIHYA 382

Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
                +     L+  GA ++  +++  T L
Sbjct: 383 AVRNNVVIINTLLDYGADIEALSQKIGTAL 412

Length = 682

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 53/212 (25%), Positives = 74/212 (34%), Gaps = 57/212 (26%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNR--------------TPLILAAAAGKLEI 50
           L+H A      D V+ +L +      K                   T L LAA     EI
Sbjct: 85  LLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEI 143

Query: 51  VRLLISNGADVNAKADGG------------HSALQ---YACSKGWKEIAELLIHNHANVN 95
           V+LL+  GA V A+A G             H        AC      I  LL  + A++ 
Sbjct: 144 VKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSP-SIVALLSEDPADIL 202

Query: 96  IQDVRGATPLH------------RAASQGITPVVKLLL-----TQRLDIDVNITDAYGNT 138
             D  G T LH               S  +      LL     ++ L++   I +  G T
Sbjct: 203 TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV---ILNHQGLT 259

Query: 139 PLHYACEEKRLTDAKLLVRCGARLDIQNKEKK 170
           PL  A +E R+   +L       L I+ K+KK
Sbjct: 260 PLKLAAKEGRIVLFRLK------LAIKYKQKK 285

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 7e-09
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
           RT L  AA +G+LE+V+ L+  G D+N   + G++AL  A   G  E+ +LL+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.9 bits (129), Expect = 9e-09
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 6   IHWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           +H A+   R +D+V  LL+  + V+ +D  ++TP+  AA    + I+  L+  GAD+ A 
Sbjct: 345 LHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404

Query: 65  ADGGHSALQYA-CSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP-VVKLLLT 122
           +    +AL +A C        + LI   ANVN ++   +TPLH A  +     V+++LL 
Sbjct: 405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464

Query: 123 QRLDID-VNITDAYG-----------NTPLHYACEEKRLTDAKLL 155
              D++ +NI + Y            N  LHY  E   L D+++L
Sbjct: 465 NGADVNAINIQNQYPLLIALEYHGIVNILLHYGAE---LRDSRVL 506

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           G +AL  A   G  E+ + L+    ++N  D  G T LH AA  G   V+KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 28  VDPKDDTNRTPLI--LAAAAGKLEIVRLLISNGADVNAKADG-GHSALQYACSKGWK--- 81
           V+  +D   TP+   L      +EI++ LI NGADVN K      SAL +  S       
Sbjct: 44  VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP 103

Query: 82  EIAELLIHNHANVNIQDVRGATPLHR 107
           EI ++LI + +++  +D  G   LH 
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHM 129

Length = 209

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 3   RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           R  +H AA  G ED V  LLK+   V  +D    T L  A +A   +I R+L    +  +
Sbjct: 559 RTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD 618

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
             A G    L  A  +      + L+    NV+ +D +GAT L  A ++    +V+LL+ 
Sbjct: 619 PHAAG--DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676

Query: 123 QRLDID-VNITDAYGNTPLHYACEEKRL 149
              D+D  N  D +  T L    +++ L
Sbjct: 677 NGADVDKANTDDDFSPTELRELLQKREL 704

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 3   RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILA----AAAGKLEIVRLLISNG 58
           R+  H  AL   E+       N +  +  D      L +     AA+G     R+L++ G
Sbjct: 46  RIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGG 105

Query: 59  ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
           AD N +   G + L  AC+ G  ++  +L+   A+  + D  G TPL  A   G   VV+
Sbjct: 106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ 165

Query: 119 LLL 121
           LL 
Sbjct: 166 LLS 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
           T LH+AA  G   +VK LL     +D+N TD  GNT LH A E   L   KLL+
Sbjct: 3   TALHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 8e-07
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAK 64
           TPL LAA  G LE+V+LL+  GADVNA+
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L +   ID+N TD  GNTPLH A +   L   + L++ G  L++++ +  T LDL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 84  AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
           A +L+   A+ N +D  G TPLH A + G   VV++LL      D  + D  G TPL  A
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLL--EFGADPTLLDKDGKTPLELA 155

Query: 144 CEEKRLTDAKLLVRC 158
            E       +LL R 
Sbjct: 156 EENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 47  KLEIVRLLISNGADVNAKADGGHSALQYACS--KGWK---EIAELLIHNHANVNIQDVRG 101
             +IV+L I+ GA+VN   +   + L    S  K +K   +I ++LI N A++N ++  G
Sbjct: 50  STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDG 109

Query: 102 ATPLHRAASQG-ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD---AKLLVR 157
            TPL+   S G I  +  LL       D  + D  G T L    +     D    KLL+ 
Sbjct: 110 ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE 169

Query: 158 CGARLD-IQNKEKKTPLD 174
            G  ++   NKEK   L 
Sbjct: 170 KGVDINTHNNKEKYDTLH 187

Length = 489

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK--LEIVRLLISNGADVNA 63
           +H A+      +V  LL + +  +  D  ++TPL   +      +E + LL+  GA +N 
Sbjct: 76  LHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN 135

Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
             D        AC+   + + + ++       I D  G   +HR           +    
Sbjct: 136 SVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMM 195

Query: 124 RLDIDVNITDAYGNTPLHYACEEK-RLTDAKLLVRCGARLDIQNKEKKTPLDLL 176
           +L I  +  D  GNTPLH  C +  +  D   L+     ++ QNK   +PL LL
Sbjct: 196 KLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLL 249

Length = 446

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 64  KAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
           KAD  GHSAL YA +     +   L++  A  N+  +    PLH+AA+   T +VK+LL 
Sbjct: 25  KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLF 82

Query: 123 QRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL 162
             +D D    D  GNT L+YA +   +   KL V+   RL
Sbjct: 83  SGMD-DSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRL 120

Length = 284

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 22/151 (14%)

Query: 45  AGKLEIVRLLISNGAD-VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGAT 103
           +G +E +  +I N  + +N   D   + L  A   G  +I EL I + A++N  + +   
Sbjct: 11  SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH 70

Query: 104 PLHRAASQGITPVVKLLLTQRLD---------------------IDVNITDAYGNTPLHY 142
           PL  A   G   ++KLL+   +D                     IDVNI DA   T LHY
Sbjct: 71  PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY 130

Query: 143 ACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           A ++  L   K+L   GA ++I++     P+
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
             AAS G     ++LLT     D N  D  G TPLH AC    +   ++L+  GA   + 
Sbjct: 88  QLAAS-GDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL 144

Query: 166 NKEKKTPLDL 175
           +K+ KTPL+L
Sbjct: 145 DKDGKTPLEL 154

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 21 LLKNKSPVDPKDDTNR-TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYA 75
          LL++        D N  TPL LAA  G LE+V+ L+  G D+N +   G +AL  A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 54  LISNG-ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
           L+ +G  D+NA    G++ L  A   G  E+ + L+    ++N++D  G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 32/167 (19%)

Query: 38  PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK----GWKEIAELLIH---- 89
           PL  A  A  L++V+ L++ G +VN       + L   C +    G KE+   +      
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 90  ----------NHANVNI------------QDVRGATPLHRAASQGI-TPVVKLLLTQRLD 126
                     N+ NV I            Q +       ++    I   + KLLL+   D
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           I++      GNT LHYA E K     +LL+  GA ++I +K   +PL
Sbjct: 160 INM-KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Length = 477

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 47  KLEIVRLLISNGADVNAKA--DGGHSAL---QYACSKGWKEIAELLIHNHANVNIQDVRG 101
           K++IV+LLI NGADVN K   +    A+   +   S   K+I +LL+   A++N++   G
Sbjct: 49  KIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNG 108

Query: 102 ATPL 105
            +P+
Sbjct: 109 VSPI 112

Length = 494

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQD 98
          G++ L  A   G  E+ +LL+   A+VN +D
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNA 63
           RTPL LAA  G LE+V+LL+  GAD+NA
Sbjct: 2  GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNA 63
            TPL LAA  G LE+V+LL+ +GAD+NA
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
            GNTPLH A     L   KLL+  GA ++ ++K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 14/103 (13%)

Query: 47  KLEIVRLLISNGADVNAKADGGHSALQYACSKGWK-EIAELLIHNHANVNIQDVRG--AT 103
               +  L+  G DVN +  G    L Y   K  K +I +LLI N A+VN    +G   T
Sbjct: 15  DKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVN---YKGYIET 71

Query: 104 PL------HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
           PL          S  I  +VKLLL  +   D+N+    G +P+
Sbjct: 72  PLCAVLRNREITSNKIKKIVKLLL--KFGADINLKTFNGVSPI 112

Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0508|consensus	615		100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.98
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4177|consensus	1143		99.97
KOG0508|consensus	615		99.97
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG4177|consensus	1143		99.96
KOG0502|consensus	296		99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02743	166	Viral ankyrin protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG0502|consensus	296		99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
PHA02884	300	ankyrin repeat protein; Provisional	99.94
PHA02741	169	hypothetical protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
KOG0505|consensus	527		99.93
KOG0505|consensus	527		99.93
KOG0507|consensus	854		99.93
KOG0514|consensus	452		99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
KOG0507|consensus	854		99.91
KOG0514|consensus	452		99.91
KOG0512|consensus	228		99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
KOG0512|consensus	228		99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.89
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.88
KOG3676|consensus	782		99.87
KOG0195|consensus	448		99.87
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.84
KOG4369|consensus	2131		99.84
KOG0195|consensus	448		99.84
KOG3676|consensus	782		99.83
KOG4369|consensus	2131		99.8
KOG4214|consensus	117		99.76
KOG4214|consensus	117		99.75
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.71
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.71
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.69
KOG1710|consensus	396		99.66
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
KOG0515|consensus	752		99.61
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.61
KOG0515|consensus	752		99.57
KOG1710|consensus	396		99.41
PF13606	30	Ank_3: Ankyrin repeat	99.24
KOG0783|consensus	1267		99.21
KOG0506|consensus	622		99.2
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.18
KOG0783|consensus	1267		99.1
PF13606	30	Ank_3: Ankyrin repeat	99.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.07
KOG0818|consensus	669		99.02
KOG0782|consensus	1004		99.0
KOG0818|consensus	669		99.0
KOG0782|consensus	1004		98.97
KOG0506|consensus	622		98.95
KOG3609|consensus	822		98.91
KOG0522|consensus	560		98.86
KOG0522|consensus	560		98.85
KOG0511|consensus	516		98.77
KOG0705|consensus	749		98.75
KOG0705|consensus	749		98.65
KOG0521|consensus	785		98.56
KOG0521|consensus	785		98.53
KOG3609|consensus	822		98.52
KOG2384|consensus	223		98.49
KOG0511|consensus	516		98.46
KOG0520|consensus	975		98.45
KOG2384|consensus	223		98.4
KOG0520|consensus	975		98.17
KOG2505|consensus	591		97.9
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.88
KOG2505|consensus	591		97.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.6
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.26
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.08
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.63
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.33
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.18
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	96.03

>KOG4412|consensus

Probab=100.00  E-value=6.2e-43  Score=223.07  Aligned_cols=181  Identities=44%  Similarity=0.643  Sum_probs=169.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhc
Q psy14007          1 NERLLIHWAALSGREDVVDFLL-KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYACSK   78 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~-~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~   78 (198)
                      ||++||||||..|+.+++++|+ +.+..+|..|..|+||||.|+..|+-++++.|+.. |++++..+..|.||||+|+..
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGK  116 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcC
Confidence            6899999999999999999999 56788999999999999999999999999999997 999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         79 GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      |+.++.++|++.|+.+..+|..+.||||-|+.-|..+++++|+..  +..++..|+.|.||||.|.-.++.+...+|+++
T Consensus       117 ~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~--~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~  194 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ--GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRA  194 (226)
T ss_pred             ChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc--CCCCCcccccCccHHHHHHhccCchHHHHHHHh
Confidence            999999999999999999999999999999999999999999998  567889999999999999999999999999999


Q ss_pred             CCCcceecCCCCCccccCCChhHHHHH
Q psy14007        159 GARLDIQNKEKKTPLDLLPLPHLAQAL  185 (198)
Q Consensus       159 g~~~~~~~~~g~t~~~~a~~~~~~~~~  185 (198)
                      |++++..|+.| ||+..|+. +..+.+
T Consensus       195 gAd~~~edke~-t~~~~a~~-~l~~al  219 (226)
T KOG4412|consen  195 GADTDREDKEG-TALRIACN-ELLEAL  219 (226)
T ss_pred             ccceeeccccC-chHHHHHH-HHHHHH
Confidence            99999999988 99888874 344443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-41  Score=241.04  Aligned_cols=191  Identities=19%  Similarity=0.169  Sum_probs=177.1

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~  106 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGN  106 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            58999999999999999999999999887764  6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCC-cHHHHHHhcCChHHHHHHHhccCCCCcccCC-CCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGA-TPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+++++|+++|++++..+..|+ ||||+|+..|+.+++++|+++++  +  ..+ ..|.||||+|+..|+.+++++|+++
T Consensus       107 ~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~--~--~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~  182 (284)
T PHA02791        107 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--S--TFDLAILLSCIHITIKNGHVDMMILLLDY  182 (284)
T ss_pred             HHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC--c--ccccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999888884 89999999999999999998742  2  223 2489999999999999999999999


Q ss_pred             CCCcceecCCCCCc-cccCCChhHHHHHhhhcccccCCCC
Q psy14007        159 GARLDIQNKEKKTP-LDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       159 g~~~~~~~~~g~t~-~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      |++++.++..|.|| +|+|+..++.++++.|...++++..
T Consensus       183 gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        183 MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Confidence            99999999999987 9999999999999999999998864

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=240.60  Aligned_cols=192  Identities=24%  Similarity=0.244  Sum_probs=107.0

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCC---------------
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD---------------   66 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~---------------   66 (198)
                      ++++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+.               
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            44555555555555555555555555555555555555555555555555555555555444433               


Q ss_pred             -------------------CCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCC
Q psy14007         67 -------------------GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI  127 (198)
Q Consensus        67 -------------------~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~  127 (198)
                                         .|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++  +.
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~--g~  159 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH--KA  159 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc--CC
Confidence                               455555555555555555555555555555555555555555555555555555554  33


Q ss_pred             CcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCC-CccccCCChhHHHHHhhhcccccCC
Q psy14007        128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK-TPLDLLPLPHLAQALTEIEPIVGDL  195 (198)
Q Consensus       128 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~~~~a~~~~~~~~~~~l~~~~~~~  195 (198)
                      +++..|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+++|+..++.++++.|...++++
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            4455555555555555555555555555555555555555442 4555555555555555555555554

>KOG4412|consensus

Probab=100.00  E-value=1.1e-39  Score=208.27  Aligned_cols=192  Identities=30%  Similarity=0.362  Sum_probs=173.0

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCC-CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCcHHHHHHhc
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKS-PVDPKDD-TNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGHSALQYACSK   78 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~-~~~~~~~-~g~~~L~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~a~~~   78 (198)
                      +.++.+.+++..-..-++.+++... .++.++. +|+|||||||..|+.+++++|++ -+..++.+|..|+||||+|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4567778888777778888888776 5777766 99999999999999999999996 4777888999999999999999


Q ss_pred             ChHHHHHHHHhc-CCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007         79 GWKEIAELLIHN-HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus        79 ~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                      |+.++++.|+.+ |++++..++.|.|+||||+..|..++.++|+++  |..++.+|..|.||||-|+.-|+.+++++|+.
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~--ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK--GALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc--CCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            999999999988 999999999999999999999999999999998  56889999999999999999999999999999


Q ss_pred             cCCCcceecCCCCCccccCCChhHHHHHhhhcccccCC
Q psy14007        158 CGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDL  195 (198)
Q Consensus       158 ~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~  195 (198)
                      .|+.++..|+.|+||+|.|.-.+..+.-..|.+.++++
T Consensus       161 ~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  161 QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADT  198 (226)
T ss_pred             cCCCCCcccccCccHHHHHHhccCchHHHHHHHhccce
Confidence            99999999999999999997677777776676666553

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=240.57  Aligned_cols=186  Identities=30%  Similarity=0.350  Sum_probs=151.9

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVD-PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~-~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +.+|||+|+..|+.+++++|++.|...+ ..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..|+
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~  147 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGD  147 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            3444555555555555555554444332 234578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCC-CCHHHHHHHhCChhhHHHHHHcC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYG-NTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|++.  |.+++..+..| .||+|+|+..++.+++++|+++|
T Consensus       148 ~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~--ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g  225 (413)
T PHA02875        148 IKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS--GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG  225 (413)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999998  56777787776 58899999999999999999999


Q ss_pred             CCccee---cCCCCCccccCCCh---hHHHHHhhhc
Q psy14007        160 ARLDIQ---NKEKKTPLDLLPLP---HLAQALTEIE  189 (198)
Q Consensus       160 ~~~~~~---~~~g~t~~~~a~~~---~~~~~~~~l~  189 (198)
                      ++++..   +..+.||++++...   ...+.++.+.
T Consensus       226 ad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        226 ADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             cCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            999865   56788999876533   3344444443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.1e-39  Score=246.33  Aligned_cols=194  Identities=32%  Similarity=0.435  Sum_probs=166.4

Q ss_pred             CcchhHHHHH--hcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          1 NERLLIHWAA--LSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG--KLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         1 ~g~~~L~~A~--~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      +|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|++++.++..|.||||.|+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            3678888888  888888888888888888888888888888888888  888888888888888888888888888888


Q ss_pred             hcChHHHHHHHHhcCCCCCcCCCCC------CcHHHHHHhcCC--hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC
Q psy14007         77 SKGWKEIAELLIHNHANVNIQDVRG------ATPLHRAASQGI--TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR  148 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~  148 (198)
                      ..|+.+++++|+++|++++..+..+      .+|+|.|+..++  .+++++|++.  |.+++..|..|.||||.|+..++
T Consensus       185 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~--g~din~~d~~g~TpL~~A~~~~~  262 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY--GVPINIKDVYGFTPLHYAVYNNN  262 (480)
T ss_pred             HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCC
Confidence            8888888888888888888777777      788888888888  8888888887  56778888889999999999999


Q ss_pred             hhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        149 LTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       149 ~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      .+++++|+++|++++.++..|.||+++|+..+..++++.|.+.++++.
T Consensus       263 ~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        263 PEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            999999999999999999999999999999999999999988887653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-37  Score=222.08  Aligned_cols=186  Identities=18%  Similarity=0.169  Sum_probs=167.7

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCC-CcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG-HSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~-~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence            47899999999999999999999999999999999999999999999999999999999999888877 58999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCH-HHHHHHhCChhhHHHHHH
Q psy14007         80 WKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP-LHYACEEKRLTDAKLLVR  157 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~  157 (198)
                      +.+++++|++++...  .+ ..|.||||+|++.|+.++++.|+++  |.+++..+..|.|| ||.|+..|+.+++++|++
T Consensus       140 ~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~--gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~  215 (284)
T PHA02791        140 DVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDY--MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK  215 (284)
T ss_pred             CHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence            999999999987543  23 3579999999999999999999998  56788888889877 999999999999999999


Q ss_pred             cCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        158 CGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       158 ~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      +|++++.+|..| +++      +..|+++.|.+...+...
T Consensus       216 ~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        216 YDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             CCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhcc
Confidence            999999999854 554      888899999887766544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-38  Score=240.80  Aligned_cols=191  Identities=31%  Similarity=0.392  Sum_probs=172.9

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH--------------------------------
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLE--------------------------------   49 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~--------------------------------   49 (198)
                      +.+|||+|+..|+.++|++|++.|++++..+..|.||||+||..|+.+                                
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            568999999999999999999999999999999999999999875433                                


Q ss_pred             --------------------------------HHHHHHhcCCCccccCCC-CCcHHHHHHhcChHHHHHHHHhcCCCCCc
Q psy14007         50 --------------------------------IVRLLISNGADVNAKADG-GHSALQYACSKGWKEIAELLIHNHANVNI   96 (198)
Q Consensus        50 --------------------------------~~~~L~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~l~~~~~~~~~   96 (198)
                                                      ++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|++++.
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~  196 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI  196 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence                                            666677778888888887 99999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHh-CChhhHHHHHHcCCCcceecC-CCCCccc
Q psy14007         97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE-KRLTDAKLLVRCGARLDIQNK-EKKTPLD  174 (198)
Q Consensus        97 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~~~  174 (198)
                      .+..|.||||.|++.++.+++++|++.  |.+++..|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||+|
T Consensus       197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~--ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        197 PDKTNNSPLHHAVKHYNKPIVHILLEN--GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            999999999999999999999999988  668888999999999999976 689999999999999999886 7999999


Q ss_pred             cCCChhHHHHHhhhcccccCCC
Q psy14007        175 LLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       175 ~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +|  .+..++++.|...++++.
T Consensus       275 ~A--~~~~~~v~~Ll~~gadin  294 (477)
T PHA02878        275 SS--IKSERKLKLLLEYGADIN  294 (477)
T ss_pred             HH--ccCHHHHHHHHHCCCCCC
Confidence            99  456788999999988865

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-37  Score=234.82  Aligned_cols=175  Identities=31%  Similarity=0.429  Sum_probs=140.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---------------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA---------------------   59 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~---------------------   59 (198)
                      +|.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|+                     
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            46788999999999999999999998888888888888888888888888888877654                     


Q ss_pred             --CccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCC
Q psy14007         60 --DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN  137 (198)
Q Consensus        60 --~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~  137 (198)
                        +++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~--g~~~n~~~~~g~  191 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK--GAYANVKDNNGE  191 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCC
Confidence              3455667788888888888888888888888888888888888888888888888888888887  556777788888


Q ss_pred             CHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCC
Q psy14007        138 TPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP  177 (198)
Q Consensus       138 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~  177 (198)
                      ||||.|+..|+.+++++|+++|++++.++..|.||+|.|+
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            8888888888888888888887765544444444444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-37  Score=234.09  Aligned_cols=188  Identities=24%  Similarity=0.366  Sum_probs=172.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||.|+..|+
T Consensus       123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~  202 (434)
T PHA02874        123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD  202 (434)
T ss_pred             CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhC-ChhhHHHHHHcC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK-RLTDAKLLVRCG  159 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~g  159 (198)
                      .+++++|++.|++++..+..|.||||.|+..+. +.+.+|+.   +.+++..|..|.||||+|+..+ +.+++++|+++|
T Consensus       203 ~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~---~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g  278 (434)
T PHA02874        203 YACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN---NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHK  278 (434)
T ss_pred             HHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc---CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc
Confidence            999999999999999999999999999999765 56666664   5578889999999999999876 789999999999


Q ss_pred             CCcceecCCCCCccccCCChh-HHHHHhhhcccc
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPH-LAQALTEIEPIV  192 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~-~~~~~~~l~~~~  192 (198)
                      ++++.++..|.||+++|+..+ ...+++.+...+
T Consensus       279 ad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~  312 (434)
T PHA02874        279 ADISIKDNKGENPIDTAFKYINKDPVIKDIIANA  312 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhc
Confidence            999999999999999999876 556666666544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=238.15  Aligned_cols=193  Identities=27%  Similarity=0.395  Sum_probs=154.6

Q ss_pred             cchhHHH-----HHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy14007          2 ERLLIHW-----AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAA--AAGKLEIVRLLISNGADVNAKADGGHSALQY   74 (198)
Q Consensus         2 g~~~L~~-----A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~--~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~   74 (198)
                      |.+|||+     |+..|+.+++++|+++|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||.
T Consensus        68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~  147 (480)
T PHA03100         68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL  147 (480)
T ss_pred             CcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            5677777     77777777777777777777777777788888888  7778888888888877777777778888888


Q ss_pred             HHhcC--hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCC------CCHHHHHHHh
Q psy14007         75 ACSKG--WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYG------NTPLHYACEE  146 (198)
Q Consensus        75 a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g------~t~l~~a~~~  146 (198)
                      |+..+  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++  |.+++..+..|      .||||.|+..
T Consensus       148 A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~t~l~~a~~~  225 (480)
T PHA03100        148 YLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN--GADINAGDIETLLFTIFETPLHIAACY  225 (480)
T ss_pred             HHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc--CCCccCCCCCCCcHHHHHhHHHHHHHh
Confidence            88877  78888888888888777777788888888888888888888877  45666666666      7788888888


Q ss_pred             CC--hhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        147 KR--LTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       147 ~~--~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      ++  .+++++|+++|++++.+|..|.||+|+|+..++.++++.|.+.++++.
T Consensus       226 ~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n  277 (480)
T PHA03100        226 NEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN  277 (480)
T ss_pred             CcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            87  888888888888888888888999999988888899988888887654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.2e-37  Score=232.33  Aligned_cols=190  Identities=23%  Similarity=0.347  Sum_probs=155.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCccc-cCCCCCcHHHHHHh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG--KLEIVRLLISNGADVNA-KADGGHSALQYACS   77 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~~~~L~~~~~~~~~-~~~~~~t~l~~a~~   77 (198)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|++++. .+..|.|||+ |+.
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~  149 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACT  149 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHH
Confidence            4788888888888888888888888888888888888888887765  47888888888888874 5778888886 556


Q ss_pred             cChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC--hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhC--ChhhHH
Q psy14007         78 KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI--TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK--RLTDAK  153 (198)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~  153 (198)
                      .++.+++++|++.|++++..+..|.||||+|+..++  .+++++|++.  |++++.+|..|.||||+|+..+  +.++++
T Consensus       150 ~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~--Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~  227 (446)
T PHA02946        150 DPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL--GISPSKPDHDGNTPLHIVCSKTVKNVDIIN  227 (446)
T ss_pred             CCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCCcHHHHH
Confidence            678888888888888888888888999988876554  5788888887  6678888888999999999875  678888


Q ss_pred             HHHHcCCCcceecCCCCCccccCCChhH-HHHHhhhcccccC
Q psy14007        154 LLVRCGARLDIQNKEKKTPLDLLPLPHL-AQALTEIEPIVGD  194 (198)
Q Consensus       154 ~Ll~~g~~~~~~~~~g~t~~~~a~~~~~-~~~~~~l~~~~~~  194 (198)
                      +|+. |++++.+|..|.||+|+|+..+. .++++.|...+..
T Consensus       228 lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        228 LLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             HHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence            8884 88999999999999999888766 4677777766554

>KOG0509|consensus

Probab=100.00  E-value=2.3e-37  Score=230.70  Aligned_cols=177  Identities=36%  Similarity=0.543  Sum_probs=120.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~-~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|.++||+|+.+|+.+++++|+++|+++|... ..+.||||||+++|+..+++.|+++|++++.+|..|.+|+|.|+..+
T Consensus        77 ~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~  156 (600)
T KOG0509|consen   77 EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFG  156 (600)
T ss_pred             CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhC
Confidence            45667777777777777777777777777665 45667777777777777777777777777777777777777777777


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC-CCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      +.-++-+++.++++++.+|..|+|||++|+..|....+..|+..  +..+...| ..|.||||+|+..|+..++.++++-
T Consensus       157 ~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f--~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  157 HTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF--GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             chHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh--cccccccccccCCchHHHHHhcCCcceEehhhhc
Confidence            77777777777777777777777777777777766656666655  33455555 5677777777777777777655555


Q ss_pred             CCCcceecCCCCCccccCCCh
Q psy14007        159 GARLDIQNKEKKTPLDLLPLP  179 (198)
Q Consensus       159 g~~~~~~~~~g~t~~~~a~~~  179 (198)
                      |++.+..|.+|+||+++|...
T Consensus       235 ~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  235 GADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCcccccccCCCCHHHHHHHh
Confidence            666666776777777776544

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-36  Score=206.71  Aligned_cols=174  Identities=25%  Similarity=0.232  Sum_probs=157.4

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCccccC-CCCCcHHHHHHhc
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG--KLEIVRLLISNGADVNAKA-DGGHSALQYACSK   78 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~   78 (198)
                      +++|||+|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+..
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~   97 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF   97 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence            57999999999999999999986   4567889999999999854  8999999999999999987 4899999998764


Q ss_pred             ---ChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHh--cCChHHHHHHHhccCCCCcccCCCCCCCHHHH-HHHhCChhhH
Q psy14007         79 ---GWKEIAELLIHNHANVNIQDVRGATPLHRAAS--QGITPVVKLLLTQRLDIDVNITDAYGNTPLHY-ACEEKRLTDA  152 (198)
Q Consensus        79 ---~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~  152 (198)
                         ++.+++++|+++|++++..+..|.||||.|+.  .++.+++++|++.  |.+++..|..|.||||. ++..++.+++
T Consensus        98 ~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~--gadin~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859         98 NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS--GVSFLNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc--CCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence               47999999999999999999999999999876  4679999999998  66888999999999996 5667899999


Q ss_pred             HHHHHcCCCcceecCCCCCccccCCChh
Q psy14007        153 KLLVRCGARLDIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       153 ~~Ll~~g~~~~~~~~~g~t~~~~a~~~~  180 (198)
                      ++|+++|++++.+|..|.||+++|+..+
T Consensus       176 ~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        176 DFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999998765

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=233.00  Aligned_cols=195  Identities=22%  Similarity=0.252  Sum_probs=171.3

Q ss_pred             CcchhHHHHHhc-----CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHhcCCCccccCCCCCcHH
Q psy14007          1 NERLLIHWAALS-----GREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG---KLEIVRLLISNGADVNAKADGGHSAL   72 (198)
Q Consensus         1 ~g~~~L~~A~~~-----g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~---~~~~~~~L~~~~~~~~~~~~~~~t~l   72 (198)
                      +|.||||.|+..     +..+++++|+++|++++..+..|.||||+|+..+   +.+++++|+++|++++.++..|.|||
T Consensus        70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL  149 (489)
T PHA02798         70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML  149 (489)
T ss_pred             CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHH
Confidence            488999998864     6689999999999999999999999999999875   78999999999999999999999999


Q ss_pred             HHHHhcCh---HHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhc----CChHHHHHHHhccCC------------------
Q psy14007         73 QYACSKGW---KEIAELLIHNHANVNIQD-VRGATPLHRAASQ----GITPVVKLLLTQRLD------------------  126 (198)
Q Consensus        73 ~~a~~~~~---~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~l~~~~~~------------------  126 (198)
                      |+|+..++   .+++++|++.|++++..+ ..+.||+|.++..    ++.+++++|+++|..                  
T Consensus       150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~  229 (489)
T PHA02798        150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNS  229 (489)
T ss_pred             HHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHH
Confidence            99999887   899999999999998875 5688999988764    367888888776431                  


Q ss_pred             -------------------CCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhh
Q psy14007        127 -------------------IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTE  187 (198)
Q Consensus       127 -------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~  187 (198)
                                         ++++.+|..|.||||.|+..++.+++++|+++|+|++..+..|.||+++|+..+..++++.
T Consensus       230 l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~  309 (489)
T PHA02798        230 LLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNS  309 (489)
T ss_pred             HHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHH
Confidence                               2455677889999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCC
Q psy14007        188 IEPIVGDL  195 (198)
Q Consensus       188 l~~~~~~~  195 (198)
                      +.+.++++
T Consensus       310 lL~~~~~~  317 (489)
T PHA02798        310 ILNKKPNK  317 (489)
T ss_pred             HHccCCCH
Confidence            98877654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=228.20  Aligned_cols=191  Identities=28%  Similarity=0.380  Sum_probs=100.7

Q ss_pred             cchhHHHHHhcC---cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhcCCCccccCCCCCcHHHHHH-
Q psy14007          2 ERLLIHWAALSG---REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAKADGGHSALQYAC-   76 (198)
Q Consensus         2 g~~~L~~A~~~g---~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~-~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~-   76 (198)
                      |.||||+|+..|   +.+++++|++.|++++..+..|.||||+|+..+ +.+++++|+++|++++.++..|.||||+|+ 
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~  126 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLS  126 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            445555555554   455555555555555555555555555555555 355555555555555555555555555555 


Q ss_pred             -hcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcC-------------------------------------ChHHH-
Q psy14007         77 -SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG-------------------------------------ITPVV-  117 (198)
Q Consensus        77 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~-------------------------------------~~~~~-  117 (198)
                       ..++.+++++|++.|++++..+..|.||+|+++..+                                     ..+++ 
T Consensus       127 ~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~  206 (471)
T PHA03095        127 GFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVR  206 (471)
T ss_pred             CCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHH
Confidence             233444555555544444444444444444433322                                     22222 


Q ss_pred             ----------------------------------HHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007        118 ----------------------------------KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus       118 ----------------------------------~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                                                        +.|++.  +.+++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus       207 ~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~--g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n  284 (471)
T PHA03095        207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA--GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN  284 (471)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                                              233333  33455555566666666666666666666666666666


Q ss_pred             eecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        164 IQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       164 ~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      ..+..|.||+++|+..++.++++.+.+.+++
T Consensus       285 ~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        285 AVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            6666666666666666666666666555443

>KOG0509|consensus

Probab=100.00  E-value=1.9e-36  Score=225.80  Aligned_cols=188  Identities=31%  Similarity=0.396  Sum_probs=176.8

Q ss_pred             hHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhcChHH
Q psy14007          5 LIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKGWKE   82 (198)
Q Consensus         5 ~L~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~   82 (198)
                      .+..|++.|+++.++.+++. |.+++..|..|.++||||+.+++.+++++|+++|+++|... ..+.||||+|+++|+..
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~  126 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS  126 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence            46789999999999999998 99999999999999999999999999999999999999988 68899999999999999


Q ss_pred             HHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCc
Q psy14007         83 IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL  162 (198)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  162 (198)
                      ++.+|+++|++++.+|.+|.+|+|.|++.++.-.+.+|+.+  +.+++.+|.+|+||||+|+..|....++.|++.|+++
T Consensus       127 vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~--~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  127 VVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK--GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh--cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999998  5789999999999999999999988899999999999


Q ss_pred             ceec-CCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        163 DIQN-KEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       163 ~~~~-~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      ..+| +.|.||||.|+..|+...+..+.+-+.+
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             cccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            9999 7999999999999999999955444443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=227.68  Aligned_cols=87  Identities=21%  Similarity=0.251  Sum_probs=75.3

Q ss_pred             HHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCc
Q psy14007         83 IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL  162 (198)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  162 (198)
                      ++..|+..|++++..+..|.||||+|+..|+.+++++|++.  |++++..+..|.||||.|+..++.+++++|++.++++
T Consensus       239 ~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~--gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        239 LVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIAL--GADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            44556677778888888999999999999999999999998  6788999999999999999999999999999999998


Q ss_pred             ceecCCCCC
Q psy14007        163 DIQNKEKKT  171 (198)
Q Consensus       163 ~~~~~~g~t  171 (198)
                      +.......+
T Consensus       317 ~~~~~~~~~  325 (471)
T PHA03095        317 ETVAATLNT  325 (471)
T ss_pred             HHHHHHHHH
Confidence            655543333

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=227.74  Aligned_cols=159  Identities=31%  Similarity=0.386  Sum_probs=147.6

Q ss_pred             HHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCC
Q psy14007         17 VVDFLLKNKSPVDPKDDT-NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN   95 (198)
Q Consensus        17 ~~~~l~~~~~~~~~~~~~-g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~   95 (198)
                      ++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++.+++++|++.|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            667777788888888888 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHhc-CChHHHHHHHhccCCCCcccCCC-CCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCcc
Q psy14007         96 IQDVRGATPLHRAASQ-GITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL  173 (198)
Q Consensus        96 ~~~~~~~~~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~  173 (198)
                      ..+..|.||||+|+.. ++.+++++|+++  |.+++..+. .|.||||.|  .++.+++++|+++|+|++..+..|.||+
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~--gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL  304 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEH--GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPL  304 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHc--CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            9999999999999975 689999999998  567777775 799999999  5678999999999999999999999999


Q ss_pred             ccCCCh
Q psy14007        174 DLLPLP  179 (198)
Q Consensus       174 ~~a~~~  179 (198)
                      ++|+..
T Consensus       305 ~~A~~~  310 (477)
T PHA02878        305 SSAVKQ  310 (477)
T ss_pred             HHHHHH
Confidence            999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.1e-35  Score=230.26  Aligned_cols=190  Identities=22%  Similarity=0.202  Sum_probs=167.3

Q ss_pred             CcchhHHHHHhc--CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHhcCCCccccCCCCCcHHHHH-
Q psy14007          1 NERLLIHWAALS--GREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK--LEIVRLLISNGADVNAKADGGHSALQYA-   75 (198)
Q Consensus         1 ~g~~~L~~A~~~--g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~--~~~~~~L~~~~~~~~~~~~~~~t~l~~a-   75 (198)
                      +|+||||+|+..  ++.+++++|+++|++++..+..|.||||+|+..|+  .+++++|+++|++++.++..|.||||.| 
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai  255 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI  255 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            488999998654  57899999999999999999999999999999995  5999999999999999999999999975 


Q ss_pred             ------------------------------------HhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHh--cCChHHH
Q psy14007         76 ------------------------------------CSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS--QGITPVV  117 (198)
Q Consensus        76 ------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~  117 (198)
                                                          +..|+.+++++|++.|++++.++..|+||||+|+.  .++.+++
T Consensus       256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIV  335 (764)
T PHA02716        256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDII  335 (764)
T ss_pred             HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHH
Confidence                                                34467889999999999999999999999999764  4678999


Q ss_pred             HHHHhccCCCCcccCCCCCCCHHHHHHH--------------hCChhhHHHHHHcCCCcceecCCCCCcccc----CCCh
Q psy14007        118 KLLLTQRLDIDVNITDAYGNTPLHYACE--------------EKRLTDAKLLVRCGARLDIQNKEKKTPLDL----LPLP  179 (198)
Q Consensus       118 ~~l~~~~~~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~----a~~~  179 (198)
                      ++|+++  |++++.+|..|.||||.|+.              .++.+++++|+++|++++.+|..|.||+|.    |...
T Consensus       336 klLLe~--GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~  413 (764)
T PHA02716        336 KLLHEY--GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNY  413 (764)
T ss_pred             HHHHHc--CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhc
Confidence            999998  66889999999999999875              367899999999999999999999999993    4455


Q ss_pred             hHHHHHhhhcccc
Q psy14007        180 HLAQALTEIEPIV  192 (198)
Q Consensus       180 ~~~~~~~~l~~~~  192 (198)
                      +..++++.|...+
T Consensus       414 ~~~dIvklLis~~  426 (764)
T PHA02716        414 MYYDIIDCLISDK  426 (764)
T ss_pred             ChHHHHHHHHhCc
Confidence            6788888887654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.6e-35  Score=221.31  Aligned_cols=190  Identities=22%  Similarity=0.307  Sum_probs=169.7

Q ss_pred             chhHHHHHh--cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC-
Q psy14007          3 RLLIHWAAL--SGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG-   79 (198)
Q Consensus         3 ~~~L~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~-   79 (198)
                      .++||.++.  .++.+++++|+++|++++..+..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+..+ 
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~  117 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD  117 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence            478888764  44679999999999999999999999999999999999999999999999999999999999998765 


Q ss_pred             -hHHHHHHHHhcCCCCCc-CCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC--hhhHHHH
Q psy14007         80 -WKEIAELLIHNHANVNI-QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR--LTDAKLL  155 (198)
Q Consensus        80 -~~~~~~~l~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~L  155 (198)
                       ..+++++|+++|++++. .+..|.|||+ ++..+..+++++|++.  +.+++..|..|.||||.|+..++  .+++++|
T Consensus       118 ~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~--gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~L  194 (446)
T PHA02946        118 EVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI--GFEARIVDKFGKNHIHRHLMSDNPKASTISWM  194 (446)
T ss_pred             chHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc--cccccccCCCCCCHHHHHHHhcCCCHHHHHHH
Confidence             48999999999999985 6889999997 6667899999999998  66888999999999999988665  5899999


Q ss_pred             HHcCCCcceecCCCCCccccCCChh--HHHHHhhhcccccCCC
Q psy14007        156 VRCGARLDIQNKEKKTPLDLLPLPH--LAQALTEIEPIVGDLP  196 (198)
Q Consensus       156 l~~g~~~~~~~~~g~t~~~~a~~~~--~~~~~~~l~~~~~~~~  196 (198)
                      +++|++++.+|..|.||+|+|+..+  +.++++.|.+ +.++.
T Consensus       195 l~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin  236 (446)
T PHA02946        195 MKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN  236 (446)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC
Confidence            9999999999999999999999875  7788888775 55554

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=222.93  Aligned_cols=192  Identities=19%  Similarity=0.237  Sum_probs=151.9

Q ss_pred             cchhHHHHHh------cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCc-cccCCCCCcH
Q psy14007          2 ERLLIHWAAL------SGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAA---GKLEIVRLLISNGADV-NAKADGGHSA   71 (198)
Q Consensus         2 g~~~L~~A~~------~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~-~~~~~~~~t~   71 (198)
                      +.||||.|+.      .|..+++++|+++|++++..+..|.||||.|+..   ++.+++++|+++|+++ +.++..|.||
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            5677877764      4667788888888888888877888888877654   5678888888888887 6777778888


Q ss_pred             HHHHHhc--ChHHHHHHHHhcCCCCCc-CCCCCCcHHHHHHhcC----ChHHHHHHHhccCC------------------
Q psy14007         72 LQYACSK--GWKEIAELLIHNHANVNI-QDVRGATPLHRAASQG----ITPVVKLLLTQRLD------------------  126 (198)
Q Consensus        72 l~~a~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~l~~~~~~------------------  126 (198)
                      ||+|+..  ++.+++++|+++|++++. .+..|.||+|++++.+    +.+++++|+++|..                  
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHh
Confidence            8877653  467788888888887776 4667778887776543    66777777776432                  


Q ss_pred             ------------------CCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhh
Q psy14007        127 ------------------IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEI  188 (198)
Q Consensus       127 ------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l  188 (198)
                                        ++++.+|..|.||||+|+..++.+++++|+++|+|++.++..|.||+|+|+..++.++++.+
T Consensus       229 ~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        229 NKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             chhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                              23455677899999999999999999999999999999999999999999999999999998


Q ss_pred             ccccc
Q psy14007        189 EPIVG  193 (198)
Q Consensus       189 ~~~~~  193 (198)
                      .+..+
T Consensus       309 L~~~p  313 (494)
T PHA02989        309 LQLKP  313 (494)
T ss_pred             HhcCC
Confidence            87654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.5e-34  Score=225.20  Aligned_cols=187  Identities=21%  Similarity=0.204  Sum_probs=158.9

Q ss_pred             HHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh---------
Q psy14007          9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAA--AGKLEIVRLLISNGADVNAKADGGHSALQYACS---------   77 (198)
Q Consensus         9 A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~--~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~---------   77 (198)
                      |+..|+.+++++|+++|++++..|..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||.|+.         
T Consensus       291 AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld  370 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILD  370 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccc
Confidence            345688899999999999999999999999999875  468999999999999999999999999999865         


Q ss_pred             -----cChHHHHHHHHhcCCCCCcCCCCCCcHHHHH----HhcCChHHHHHHHhccC-----------------------
Q psy14007         78 -----KGWKEIAELLIHNHANVNIQDVRGATPLHRA----ASQGITPVVKLLLTQRL-----------------------  125 (198)
Q Consensus        78 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a----~~~~~~~~~~~l~~~~~-----------------------  125 (198)
                           .++.+++++|+++|++++..+..|.||||.+    ...+..+++++|+..+.                       
T Consensus       371 ~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~l  450 (764)
T PHA02716        371 PETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCII  450 (764)
T ss_pred             ccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhH
Confidence                 3689999999999999999999999999942    23456778877766421                       


Q ss_pred             ------------------------------------CCCcccCCCCCCCHHHHHHHhCChhh-----HHHHHHcCCCcce
Q psy14007        126 ------------------------------------DIDVNITDAYGNTPLHYACEEKRLTD-----AKLLVRCGARLDI  164 (198)
Q Consensus       126 ------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~-----~~~Ll~~g~~~~~  164 (198)
                                                          +.+.+..|..|.||||+|+..|+.++     +++|++.|++++.
T Consensus       451 hh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~  530 (764)
T PHA02716        451 HHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI  530 (764)
T ss_pred             HHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc
Confidence                                                01123456789999999999988754     5999999999999


Q ss_pred             ecCCCCCccccCCChhHH-----HHHhhhcccccCC
Q psy14007        165 QNKEKKTPLDLLPLPHLA-----QALTEIEPIVGDL  195 (198)
Q Consensus       165 ~~~~g~t~~~~a~~~~~~-----~~~~~l~~~~~~~  195 (198)
                      +|+.|+||+|+|+..++.     ++++.+.+.++.+
T Consensus       531 ~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~  566 (764)
T PHA02716        531 PTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNV  566 (764)
T ss_pred             cCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCc
Confidence            999999999999999866     9999999877654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-34  Score=227.87  Aligned_cols=194  Identities=28%  Similarity=0.299  Sum_probs=158.3

Q ss_pred             CcchhHHHHHhcCcH-HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhcCCCccccCCCCCcHHHHHHhc
Q psy14007          1 NERLLIHWAALSGRE-DVVDFLLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAKADGGHSALQYACSK   78 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~-~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~-~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~   78 (198)
                      +|+||||+|+..|+. ++++.|++.|++++..+..|.||||+|+..| ..++++.|+..|++++..+..|.||||+|+..
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            378889999988885 5888888888888888888889999988888 58888888888888888888888888888875


Q ss_pred             -ChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC-hhhHHHHH
Q psy14007         79 -GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR-LTDAKLLV  156 (198)
Q Consensus        79 -~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll  156 (198)
                       +..+++++|++.|++++.++..|.||||+|+..++.+++++|++.  |.+++..+..|.||||+|+..++ ..++++|+
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~--gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll  429 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDY--GADIEALSQKIGTALHFALCGTNPYMSVKTLI  429 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCccccCCCCCchHHHHHHcCCHHHHHHHHH
Confidence             467788888888888888888888888888888888888888887  55677777778888888876655 45678888


Q ss_pred             HcCCCcceecCCCCCccccCCChh-HHHHHhhhcccccCCC
Q psy14007        157 RCGARLDIQNKEKKTPLDLLPLPH-LAQALTEIEPIVGDLP  196 (198)
Q Consensus       157 ~~g~~~~~~~~~g~t~~~~a~~~~-~~~~~~~l~~~~~~~~  196 (198)
                      ++|++++.+|..|.||+|+|+..+ ..++++.|.+.++++.
T Consensus       430 ~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        430 DRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             hCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCC
Confidence            888888888888888888887755 5678888888777654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.1e-34  Score=226.30  Aligned_cols=194  Identities=24%  Similarity=0.294  Sum_probs=155.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------------------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS------------------------   56 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~------------------------   56 (198)
                      +|+||||+|+..|+.++|++|+++|++++..+..|.||||.|+..++.+++++|++                        
T Consensus       177 ~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~  256 (682)
T PHA02876        177 YCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETS  256 (682)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHH
Confidence            48899999999999999999999999988888888888888888887777666554                        


Q ss_pred             -----cCCCccccCCCCCcHHHHHHhcChH-HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcC-ChHHHHHHHhccCCCCc
Q psy14007         57 -----NGADVNAKADGGHSALQYACSKGWK-EIAELLIHNHANVNIQDVRGATPLHRAASQG-ITPVVKLLLTQRLDIDV  129 (198)
Q Consensus        57 -----~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~  129 (198)
                           .|++++..+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+..| ..++++.|+..  |.++
T Consensus       257 ~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~--gadi  334 (682)
T PHA02876        257 LLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML--GADV  334 (682)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc--CCCC
Confidence                 3445566667788888888888775 5788888888888888888888888888888 47778888876  5567


Q ss_pred             ccCCCCCCCHHHHHHHh-CChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        130 NITDAYGNTPLHYACEE-KRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       130 ~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +..+..|.||||.|+.. ++.+++++|++.|++++.+|..|.||+|+|+..++.++++.|.+.++++.
T Consensus       335 n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE  402 (682)
T ss_pred             CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            77777888888888775 45777788888888888888888888888888888888888887776653

>KOG0510|consensus

Probab=100.00  E-value=1.3e-33  Score=215.45  Aligned_cols=195  Identities=27%  Similarity=0.373  Sum_probs=163.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc--------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLK-----NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV--------------   61 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~-----~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~--------------   61 (198)
                      +|+.|+|.|+++|..++.+.++.     .+..++..+..+.+|||.|+..|+.++++.+++.|...              
T Consensus       186 ~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kel  265 (929)
T KOG0510|consen  186 DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKEL  265 (929)
T ss_pred             cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHH
Confidence            35566666666666666666665     33456666777888888888888888888888765432              


Q ss_pred             -cccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHH
Q psy14007         62 -NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL  140 (198)
Q Consensus        62 -~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l  140 (198)
                       +..|.+|.||||+|++.|+.+.++.|+..|++++.++.++.||+|.|+++|+.++++.|++-......+..|-.|.|||
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence             2346789999999999999999999999999999999999999999999999999999998322345677888999999


Q ss_pred             HHHHHhCChhhHHHHHHcCCCcc---eecCCCCCccccCCChhHHHHHhhhcccccCC
Q psy14007        141 HYACEEKRLTDAKLLVRCGARLD---IQNKEKKTPLDLLPLPHLAQALTEIEPIVGDL  195 (198)
Q Consensus       141 ~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~  195 (198)
                      |.|++.|+..+++.|+++|++..   ..|.+|.||+|+|+..|+...++.+...+.++
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            99999999999999999999887   55999999999999999999999999999988

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.3e-33  Score=213.57  Aligned_cols=193  Identities=25%  Similarity=0.298  Sum_probs=168.8

Q ss_pred             cchhHHHHHh--cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-----CCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy14007          2 ERLLIHWAAL--SGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAA-----GKLEIVRLLISNGADVNAKADGGHSALQY   74 (198)
Q Consensus         2 g~~~L~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~-----~~~~~~~~L~~~~~~~~~~~~~~~t~l~~   74 (198)
                      |.++++.+..  .++.+++++|+++|++++..+..|.||||.|+..     ++.+++++|+++|++++.++..|.||||+
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~  115 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC  115 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence            5566664443  3478999999999999999999999999998864     67899999999999999999999999999


Q ss_pred             HHhcC---hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC---hHHHHHHHhccCCCCcccCC-CCCCCHHHHHHHh-
Q psy14007         75 ACSKG---WKEIAELLIHNHANVNIQDVRGATPLHRAASQGI---TPVVKLLLTQRLDIDVNITD-AYGNTPLHYACEE-  146 (198)
Q Consensus        75 a~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~~~~~~~~-~~g~t~l~~a~~~-  146 (198)
                      |+..+   +.+++++|+++|++++..+..|.||||+|++.++   .+++++|+++  |++++..+ ..|.||||.++.. 
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~--gadin~~~~~~~~t~Lh~~~~~~  193 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK--GVDINTHNNKEKYDTLHCYFKYN  193 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh--CCCcccccCcCCCcHHHHHHHhc
Confidence            99875   7899999999999999999999999999999987   8999999998  56777664 5688999998765 


Q ss_pred             ---CChhhHHHHHHcCCC---------------------------------------cceecCCCCCccccCCChhHHHH
Q psy14007        147 ---KRLTDAKLLVRCGAR---------------------------------------LDIQNKEKKTPLDLLPLPHLAQA  184 (198)
Q Consensus       147 ---~~~~~~~~Ll~~g~~---------------------------------------~~~~~~~g~t~~~~a~~~~~~~~  184 (198)
                         ++.+++++|+++|++                                       ++.+|..|.||+|+|+..++.++
T Consensus       194 ~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~  273 (489)
T PHA02798        194 IDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI  273 (489)
T ss_pred             cccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHH
Confidence               368888888887764                                       44567789999999999999999


Q ss_pred             HhhhcccccCCC
Q psy14007        185 LTEIEPIVGDLP  196 (198)
Q Consensus       185 ~~~l~~~~~~~~  196 (198)
                      ++.|.+.++++.
T Consensus       274 v~~LL~~GAdin  285 (489)
T PHA02798        274 FEYLLQLGGDIN  285 (489)
T ss_pred             HHHHHHcCCccc
Confidence            999999999875

>KOG0510|consensus

Probab=100.00  E-value=1.5e-33  Score=215.11  Aligned_cols=189  Identities=30%  Similarity=0.409  Sum_probs=150.1

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      +.+|+|+|+..|..++++.|+++|++++..|..|.||||.||.+++.|..+.|++.|+++...+..|.+|+|.|+++|..
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~  200 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSK  200 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcch
Confidence            45677777777777777777777777777777777777777777777766777777777777777777777777777777


Q ss_pred             HHHHHHHh-----cCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCC-------------cccCCCCCCCHHHHH
Q psy14007         82 EIAELLIH-----NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID-------------VNITDAYGNTPLHYA  143 (198)
Q Consensus        82 ~~~~~l~~-----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~g~t~l~~a  143 (198)
                      ++.+.+++     ++..++..+..+.+|||.|+..|+.++++.+++.+.+..             ++..|++|.||||+|
T Consensus       201 e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a  280 (929)
T KOG0510|consen  201 ECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYA  280 (929)
T ss_pred             hhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHH
Confidence            77777776     555667777777888888888888888888877654432             344678899999999


Q ss_pred             HHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcc
Q psy14007        144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEP  190 (198)
Q Consensus       144 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~  190 (198)
                      ++.|+.++++.|+..|++++.+++++.||+|.|+.+|+.+.++.|.+
T Consensus       281 ~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  281 ARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988

>KOG0508|consensus

Probab=100.00  E-value=6.5e-34  Score=205.82  Aligned_cols=187  Identities=32%  Similarity=0.443  Sum_probs=172.1

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHh-CCCCCC--------CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLK-NKSPVD--------PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSA   71 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~-~~~~~~--------~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~   71 (198)
                      ||.+||-.|+++|+.++|++|++ .++++.        .....|-+||-.|+..||+++||.|+++|+++|..+.-+.||
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStP  120 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTP  120 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCcc
Confidence            68899999999999999999998 455443        334578889988999999999999999999999888888999


Q ss_pred             HHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhh
Q psy14007         72 LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD  151 (198)
Q Consensus        72 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  151 (198)
                      |..||..|+.+++++|+++|++++..++.|.|+|++||..|+.+++++|++.  |+|++.++..|.|+||.|+..|+.++
T Consensus       121 LraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~--gADvn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ--GADVNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh--CCCcchhcccCchHHHhhhhcccHHH
Confidence            9999999999999999999999999999999999999999999999999998  77999999999999999999999999


Q ss_pred             HHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcc
Q psy14007        152 AKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEP  190 (198)
Q Consensus       152 ~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~  190 (198)
                      +++|+.+|+.+. +|..|.||+-.|+..|..++++.|.+
T Consensus       199 vq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  199 VQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999764 45569999999999999999999885

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=215.89  Aligned_cols=190  Identities=15%  Similarity=0.120  Sum_probs=159.8

Q ss_pred             CcchhHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHhcCCCccccCCCCCcHHH
Q psy14007          1 NERLLIHWAALS---GREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKL----EIVRLLISNGADVNAKADGGHSALQ   73 (198)
Q Consensus         1 ~g~~~L~~A~~~---g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~----~~~~~L~~~~~~~~~~~~~~~t~l~   73 (198)
                      +|+||||+|+..   |+.+++++|+++|++++..+..|.||||+|+..|+.    ++++.|++.+...+..+  ..++++
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~  108 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSY  108 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHH
Confidence            589999998665   789999999999999999999999999999999984    45678887644333333  236778


Q ss_pred             HHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHH--hcCChHHHHHHHhccCCCCcccCCC---CC-----------C
Q psy14007         74 YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA--SQGITPVVKLLLTQRLDIDVNITDA---YG-----------N  137 (198)
Q Consensus        74 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~~~---~g-----------~  137 (198)
                      .|+..++.+++++|+++|++++..+..|.||||.++  ..|+.+++++|+++  |++++..|.   .|           .
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~--Ga~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN--GCSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc--CCCccccccccccccccccccccccc
Confidence            899999999999999999999999999999999654  57899999999998  556654442   23           5


Q ss_pred             CHHHHHHH-----------hCChhhHHHHHHcCCCcceecCCCCCccccCCChhHH--HHHhhhcccccCC
Q psy14007        138 TPLHYACE-----------EKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA--QALTEIEPIVGDL  195 (198)
Q Consensus       138 t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~--~~~~~l~~~~~~~  195 (198)
                      ||||+|+.           .++.+++++|++.|++++.+|..|.||+|+|+..++.  ++++.|.. +.++
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence            99999986           4588999999999999999999999999999999885  79999875 5543

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-32  Score=202.04  Aligned_cols=186  Identities=16%  Similarity=0.080  Sum_probs=163.0

Q ss_pred             HHHHhcCcHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhc
Q psy14007          7 HWAALSGREDVVDFLLKNKSPVD------PKDDTNRTPLILAAA--AGKLEIVRLLISNGADVNAKADGGHSALQYACSK   78 (198)
Q Consensus         7 ~~A~~~g~~~~~~~l~~~~~~~~------~~~~~g~~~L~~A~~--~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~   78 (198)
                      -+|+..+..++++.|+.+|++++      ..+.+++|+||.++.  .++.+++++|+++|++++..  .+.||+|.|+..
T Consensus        82 ~~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~  159 (437)
T PHA02795         82 RLFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK  159 (437)
T ss_pred             hHHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence            37888899999999999999988      777889999999999  88999999999999999764  447999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcCC------CCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhH
Q psy14007         79 GWKEIAELLIHNHANVNIQD------VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA  152 (198)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  152 (198)
                      ++.+++++|+++|++.....      ..+.+++|.+...+..+++++|+.+  |++++..|..|.||||+|+..|+.+++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~--GADIN~kD~~G~TpLh~Aa~~g~~eiV  237 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY--IEDINQLDAGGRTLLYRAIYAGYIDLV  237 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC--cCCcCcCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999997432221      3467888999999999999999998  668889999999999999999999999


Q ss_pred             HHHHHcCCCcceecCCCCCccccCCChh--------HHHHHhhhcccccCCC
Q psy14007        153 KLLVRCGARLDIQNKEKKTPLDLLPLPH--------LAQALTEIEPIVGDLP  196 (198)
Q Consensus       153 ~~Ll~~g~~~~~~~~~g~t~~~~a~~~~--------~~~~~~~l~~~~~~~~  196 (198)
                      ++|+++|++++.++..|.||+|+|+..|        ..++++.|.+.++++.
T Consensus       238 elLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        238 SWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999887        4689999988877664

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-32  Score=208.63  Aligned_cols=193  Identities=22%  Similarity=0.290  Sum_probs=167.0

Q ss_pred             CcchhHHHHHhcC--cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC------CHHHHHHHHhcCCCccccCCCCCcHH
Q psy14007          1 NERLLIHWAALSG--REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG------KLEIVRLLISNGADVNAKADGGHSAL   72 (198)
Q Consensus         1 ~g~~~L~~A~~~g--~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~------~~~~~~~L~~~~~~~~~~~~~~~t~l   72 (198)
                      +|.++||.++..+  +.+++++|+++|++++..+ .+.||||.|+..+      ..+++++|+++|++++.++..|.|||
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL  112 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI  112 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            4788887655543  6899999999999999876 6799999998764      47899999999999999999999999


Q ss_pred             HHHHhc---ChHHHHHHHHhcCCCC-CcCCCCCCcHHHHHHhc--CChHHHHHHHhccCCCCccc-CCCCCCCHHHHHHH
Q psy14007         73 QYACSK---GWKEIAELLIHNHANV-NIQDVRGATPLHRAASQ--GITPVVKLLLTQRLDIDVNI-TDAYGNTPLHYACE  145 (198)
Q Consensus        73 ~~a~~~---~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~~~~~~~-~~~~g~t~l~~a~~  145 (198)
                      |.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++  |++++. .+..|.||||.|+.
T Consensus       113 ~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~--Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        113 VCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF--GVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc--CCCccccccccCCChHHHHHh
Confidence            988764   6799999999999999 88999999999998754  578999999998  557766 57789999999987


Q ss_pred             hC----ChhhHHHHHHcCCCcce--------------------------------------ecCCCCCccccCCChhHHH
Q psy14007        146 EK----RLTDAKLLVRCGARLDI--------------------------------------QNKEKKTPLDLLPLPHLAQ  183 (198)
Q Consensus       146 ~~----~~~~~~~Ll~~g~~~~~--------------------------------------~~~~g~t~~~~a~~~~~~~  183 (198)
                      .+    +.+++++|+++|++++.                                      +|..|.||+|+|+..++.+
T Consensus       191 ~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~  270 (494)
T PHA02989        191 NDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYE  270 (494)
T ss_pred             cccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHH
Confidence            64    88999999999887653                                      4456999999999999999


Q ss_pred             HHhhhcccccCCC
Q psy14007        184 ALTEIEPIVGDLP  196 (198)
Q Consensus       184 ~~~~l~~~~~~~~  196 (198)
                      +++.|.+.++++.
T Consensus       271 ~v~~LL~~Gadin  283 (494)
T PHA02989        271 AFNYLLKLGDDIY  283 (494)
T ss_pred             HHHHHHHcCCCcc
Confidence            9999999998875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.98  E-value=2.3e-31  Score=215.21  Aligned_cols=178  Identities=28%  Similarity=0.321  Sum_probs=163.9

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      +.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.++++.|+++|++++.+|..|.||||.|+..|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      +++++|++.+...+.  ..+.++||.|+..|+.++++.|+++  |++++..|..|.||||.|+..|+.+++++|+++|++
T Consensus       605 ~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~--Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd  680 (823)
T PLN03192        605 KIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQ--GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD  680 (823)
T ss_pred             HHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence            999999988765543  4577899999999999999999998  668899999999999999999999999999999999


Q ss_pred             cceecCCC-CCccccCCChhHHH
Q psy14007        162 LDIQNKEK-KTPLDLLPLPHLAQ  183 (198)
Q Consensus       162 ~~~~~~~g-~t~~~~a~~~~~~~  183 (198)
                      ++..+..| .||.+++......+
T Consensus       681 v~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        681 VDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhh
Confidence            99999988 89988775544433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=193.06  Aligned_cols=183  Identities=18%  Similarity=0.115  Sum_probs=156.0

Q ss_pred             cchhHHHHHh--cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC------CCCCcHHH
Q psy14007          2 ERLLIHWAAL--SGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA------DGGHSALQ   73 (198)
Q Consensus         2 g~~~L~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~------~~~~t~l~   73 (198)
                      ++++||+|+.  .|+.+++++|+++|++++..  .+.||+|.|+..++.+++++|+++|++.....      ..+.+++|
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~  193 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGF  193 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhH
Confidence            6899999999  99999999999999999874  45899999999999999999999997543222      24778999


Q ss_pred             HHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC-----
Q psy14007         74 YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR-----  148 (198)
Q Consensus        74 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----  148 (198)
                      .|...+..+++++|+++|++++.++..|.||||+|+..|+.+++++|+++  |++++..+..|.||||.|+..|+     
T Consensus       194 ~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~--GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        194 LVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN--GANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             HHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence            99999999999999999999999999999999999999999999999998  66889999999999999999984     


Q ss_pred             ---hhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        149 ---LTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       149 ---~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                         .+++++|+++|++++.....+   +...  ....++++.+..+..
T Consensus       272 ~~~~eIvelLL~~gadI~~~~~~~---~~~~--~~n~~~ik~lI~y~~  314 (437)
T PHA02795        272 ETHLKILEILLREPLSIDCIKLAI---LNNT--IENHDVIKLCIKYFM  314 (437)
T ss_pred             ccHHHHHHHHHhCCCCCCchhHHh---hhcc--cchHHHHHHHHHHHH
Confidence               589999999999987654332   1111  125667777665543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=199.99  Aligned_cols=188  Identities=15%  Similarity=0.091  Sum_probs=158.6

Q ss_pred             CcchhHHHHHhcC---cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCc--cccCCCCCcHHH
Q psy14007          1 NERLLIHWAALSG---REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG--KLEIVRLLISNGADV--NAKADGGHSALQ   73 (198)
Q Consensus         1 ~g~~~L~~A~~~g---~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~~~~L~~~~~~~--~~~~~~~~t~l~   73 (198)
                      +|+||||+|+..|   +.+++++|+++|++++..|..|.||||+|+..+  +.+++++|++.|++.  +..+.-+.+|++
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~  119 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY  119 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence            5899999999997   599999999999999999999999999999976  799999999996654  666767889999


Q ss_pred             HHHh--cChHHHHHHHHh-cCCCCCcCCC-----CCCcHHHHHHhcCChHHHHHHHhccCCCCcc-------cCCCCC-C
Q psy14007         74 YACS--KGWKEIAELLIH-NHANVNIQDV-----RGATPLHRAASQGITPVVKLLLTQRLDIDVN-------ITDAYG-N  137 (198)
Q Consensus        74 ~a~~--~~~~~~~~~l~~-~~~~~~~~~~-----~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-------~~~~~g-~  137 (198)
                      .++.  .++.+++++|+. .+.+++....     .|.+|++++...+..+++++|+++  |++.+       ..+..+ .
T Consensus       120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~--g~~v~g~~~~~~~~~~~~c~  197 (672)
T PHA02730        120 SYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS--ECYSTGYVFRSCMYDSDRCK  197 (672)
T ss_pred             HHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc--CCcccccccccccccCCccc
Confidence            9888  888999999996 6677666533     789999999999999999999998  44553       123333 4


Q ss_pred             CHHHHHHH------hCChhhHHHHHHcCCCcceecCCCCCccc--cCCChhHHHHHhhhcc
Q psy14007        138 TPLHYACE------EKRLTDAKLLVRCGARLDIQNKEKKTPLD--LLPLPHLAQALTEIEP  190 (198)
Q Consensus       138 t~l~~a~~------~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~--~a~~~~~~~~~~~l~~  190 (198)
                      |.||+++.      ....+++++|+++|++++.+|..|.||||  .+...++.|+++.|.+
T Consensus       198 ~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        198 NSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             hhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            55664443      45799999999999999999999999998  4666777999999987

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.9e-29  Score=171.64  Aligned_cols=145  Identities=19%  Similarity=0.209  Sum_probs=131.3

Q ss_pred             CcchhHHHHHhcC--cHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy14007          1 NERLLIHWAALSG--REDVVDFLLKNKSPVDPKD-DTNRTPLILAAAA---GKLEIVRLLISNGADVNAKADGGHSALQY   74 (198)
Q Consensus         1 ~g~~~L~~A~~~g--~~~~~~~l~~~~~~~~~~~-~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~   74 (198)
                      +|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+..   ++.+++++|+++|++++.++..|.||||.
T Consensus        50 ~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~  129 (209)
T PHA02859         50 LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM  129 (209)
T ss_pred             cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            4789999999854  8999999999999999987 4899999998764   47999999999999999999999999999


Q ss_pred             HHh--cChHHHHHHHHhcCCCCCcCCCCCCcHHHH-HHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhC
Q psy14007         75 ACS--KGWKEIAELLIHNHANVNIQDVRGATPLHR-AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK  147 (198)
Q Consensus        75 a~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~  147 (198)
                      |+.  .++.+++++|++.|++++.++..|.||+|. ++..++.+++++|+++  |++++..|..|.|||++|...+
T Consensus       130 a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~--Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        130 YMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSL--GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhhh
Confidence            876  467999999999999999999999999996 5667899999999998  6688899999999999998764

>KOG4177|consensus

Probab=99.97  E-value=4.9e-30  Score=205.45  Aligned_cols=192  Identities=31%  Similarity=0.421  Sum_probs=174.9

Q ss_pred             CcchhHHHHHhcC-cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSG-REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g-~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|.|++|+|+..| ..++...+++.|.+++.....|.||||.|++.|+.++++.|++.++..+.....+.+++|.+...+
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~  518 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED  518 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh
Confidence            4788899999988 788888888888888888889999999999999999999888888777777778889999999998


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      .....+.+++.|+..+.++..+.||||.|+.+|+.+++++|+++  +.+.+.+++.|+||||.|+..|+.+++++|+++|
T Consensus       519 ~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~--gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G  596 (1143)
T KOG4177|consen  519 TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH--GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG  596 (1143)
T ss_pred             hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC--CccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence            88999999999999999999999999999999999999999999  6688889999999999999999999999999999


Q ss_pred             CCcceecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      ++++..+.+|.||+++|.+.+...+++.+...+.+
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            99999999999999999999999999998877766

>KOG0508|consensus

Probab=99.97  E-value=1.8e-29  Score=183.01  Aligned_cols=154  Identities=34%  Similarity=0.485  Sum_probs=146.1

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|-+||+.|+..|++++||.|+++|+++|.......|||..||+-|+++++|+|+++|++++..|..|.|+|++||..|+
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH  162 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence            47789999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                      .+++++|++.|++++.++..|+|+||.|+..|+.++++.|+.++.  .+ ..|..|.|||..|...|..++|++|++
T Consensus       163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga--~i-~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA--KI-DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc--ee-eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999999999999999999999999999999855  33 355669999999999999999999996

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.3e-29  Score=191.58  Aligned_cols=185  Identities=18%  Similarity=0.184  Sum_probs=128.4

Q ss_pred             hcCcHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHh--------------------------------
Q psy14007         11 LSGREDVVDFLLKNKSPVDPKDDTNRTPLIL--AAAAGKLEIVRLLIS--------------------------------   56 (198)
Q Consensus        11 ~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~--A~~~~~~~~~~~L~~--------------------------------   56 (198)
                      ..++.+++++|+++|++++..|..|.||||+  |...++.|++++|++                                
T Consensus       211 ~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (672)
T PHA02730        211 ESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTP  290 (672)
T ss_pred             hccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhccc
Confidence            3456788888888888888888888888874  444566888888887                                


Q ss_pred             cCCCccc--------------------cCCCCCc---------------------HHHHHHhcC---hHHHHHHHHhcCC
Q psy14007         57 NGADVNA--------------------KADGGHS---------------------ALQYACSKG---WKEIAELLIHNHA   92 (198)
Q Consensus        57 ~~~~~~~--------------------~~~~~~t---------------------~l~~a~~~~---~~~~~~~l~~~~~   92 (198)
                      +|++...                    .+..|.+                     .|+.-..++   +.+++++|+++|+
T Consensus       291 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA  370 (672)
T PHA02730        291 YNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA  370 (672)
T ss_pred             CCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC
Confidence            5655533                    3334433                     445545544   4777888888888


Q ss_pred             CCCcCCCCCCcHHHHHHhcCC----hHHHHHHHhccCCCCcccCCCCCCCHHHH---HHHhC---------ChhhHHHHH
Q psy14007         93 NVNIQDVRGATPLHRAASQGI----TPVVKLLLTQRLDIDVNITDAYGNTPLHY---ACEEK---------RLTDAKLLV  156 (198)
Q Consensus        93 ~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~g~t~l~~---a~~~~---------~~~~~~~Ll  156 (198)
                      +++.. ..|.||||+|+..++    .+++++|+++|.+.+++.+|..|.||||.   +...+         ..+++++|+
T Consensus       371 dIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        371 TMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            87764 677788887777664    67888888775444667777777888773   22221         124577888


Q ss_pred             HcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        157 RCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       157 ~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      .+|++++.+|..|.||+|+|+..++.++++.|...+++++
T Consensus       450 s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN  489 (672)
T PHA02730        450 KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVN  489 (672)
T ss_pred             hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence            8888888888888888888877777778888877777664

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=193.10  Aligned_cols=190  Identities=18%  Similarity=0.137  Sum_probs=156.2

Q ss_pred             CcchhHHHHHhcCcHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          1 NERLLIHWAALSGRED----VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~----~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      +|+||||+|+..|+.+    +++.|++.+...+..+  ..+++++|+..++.+++++|+++|++++.++..|.||||.++
T Consensus        67 ~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~  144 (661)
T PHA02917         67 RQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYV  144 (661)
T ss_pred             CCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHH
Confidence            5899999999999854    5677887654344432  236788899999999999999999999999999999999653


Q ss_pred             --hcChHHHHHHHHhcCCCCCcCCC---CC-----------CcHHHHHHh-----------cCChHHHHHHHhccCCCCc
Q psy14007         77 --SKGWKEIAELLIHNHANVNIQDV---RG-----------ATPLHRAAS-----------QGITPVVKLLLTQRLDIDV  129 (198)
Q Consensus        77 --~~~~~~~~~~l~~~~~~~~~~~~---~~-----------~~~l~~a~~-----------~~~~~~~~~l~~~~~~~~~  129 (198)
                        ..++.+++++|+++|++++..+.   .|           .||||+|+.           .++.+++++|+++  |+++
T Consensus       145 a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~--Gadv  222 (661)
T PHA02917        145 MTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH--GIKP  222 (661)
T ss_pred             HccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC--CCCc
Confidence              57899999999999999976543   23           599999986           4578999999998  6789


Q ss_pred             ccCCCCCCCHHHHHHHhCCh--hhHHHHHHcCCCcc----eecCCCCCccccCCCh---------hHHHHHhhhcccccC
Q psy14007        130 NITDAYGNTPLHYACEEKRL--TDAKLLVRCGARLD----IQNKEKKTPLDLLPLP---------HLAQALTEIEPIVGD  194 (198)
Q Consensus       130 ~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~~~----~~~~~g~t~~~~a~~~---------~~~~~~~~l~~~~~~  194 (198)
                      +..|..|.||||+|+..|+.  +++++|++ |++.+    ..+..|.+|+++|++.         ...++++.|+..+.+
T Consensus       223 n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        223 SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            99999999999999999985  79999975 88765    4666788888888842         277899999998876


Q ss_pred             C
Q psy14007        195 L  195 (198)
Q Consensus       195 ~  195 (198)
                      .
T Consensus       302 ~  302 (661)
T PHA02917        302 H  302 (661)
T ss_pred             C
Confidence            4

>KOG4177|consensus

Probab=99.96  E-value=2.6e-30  Score=206.98  Aligned_cols=196  Identities=33%  Similarity=0.410  Sum_probs=166.0

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC-h
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG-W   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~-~   80 (198)
                      |.+|+|.|+..|..++++.+++.|.+++...+.|.||||.|+.+++..+++.+++.+++++..+..|.|++|+|+..| .
T Consensus       374 ~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~  453 (1143)
T KOG4177|consen  374 GFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRY  453 (1143)
T ss_pred             CCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccH
Confidence            677888888888888888888888888888888888888888888888888888888888888888888888888887 7


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccC-------------------------------CCCc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL-------------------------------DIDV  129 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-------------------------------~~~~  129 (198)
                      .+....+.+.|.+++.....|.||||++.+.|+.+++..+++...                               +.+.
T Consensus       454 ~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v  533 (1143)
T KOG4177|consen  454 LQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV  533 (1143)
T ss_pred             hhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCce
Confidence            777777778888888877888888888887777777666665321                               4556


Q ss_pred             ccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       130 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      +..+..|.||||+|+.+|+.++|++|+++|+|++.+++.|+||+|.|+..|..+++..|.+.++++..
T Consensus       534 ~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  534 DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             ehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            77788899999999999999999999999999999999999999999999999999999999998864

>KOG0502|consensus

Probab=99.96  E-value=2e-29  Score=166.29  Aligned_cols=185  Identities=26%  Similarity=0.331  Sum_probs=170.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+++++.|+-.|+...+...+.+|...|.++-.+++|+.+++...+.+.+..+.+.  .+|..|..|.|||.+|+..|+
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~  172 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGH  172 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCc
Confidence            488999999999999999999999999999999999999999999988887776654  467789999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      ..++++|++.|++++...+...++|..|++.|..+++++|+.+  +.++|..|.+|-|||-+|++-++.+|++.|+..|+
T Consensus       173 i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r--~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA  250 (296)
T KOG0502|consen  173 IPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR--EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA  250 (296)
T ss_pred             hHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc--CCCcceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999998  66889999999999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcc
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEP  190 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~  190 (198)
                      +++..+..|.+++++|...|+. ++++++.
T Consensus       251 d~t~e~dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  251 DVTQEDDSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             CcccccccCCcHHHHHHHhhhH-HHHHHHH
Confidence            9999999999999999999988 6655544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=1.2e-27  Score=193.81  Aligned_cols=161  Identities=21%  Similarity=0.272  Sum_probs=149.5

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhc
Q psy14007         32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQ  111 (198)
Q Consensus        32 ~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  111 (198)
                      +..+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      |+.+++++|++.+.  ..  ....+.++||.|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.++++.|...
T Consensus       602 g~~~iv~~L~~~~~--~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        602 KHHKIFRILYHFAS--IS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             CCHHHHHHHHhcCc--cc--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            99999999998643  22  234577999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q psy14007        192 VGDLP  196 (198)
Q Consensus       192 ~~~~~  196 (198)
                      ++++.
T Consensus       678 GAdv~  682 (823)
T PLN03192        678 GADVD  682 (823)
T ss_pred             CCCCC
Confidence            98875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.4e-27  Score=180.79  Aligned_cols=192  Identities=17%  Similarity=0.145  Sum_probs=152.4

Q ss_pred             CcchhHHHHHhcC-------cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCc-c--------
Q psy14007          1 NERLLIHWAALSG-------REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG--KLEIVRLLISNGADV-N--------   62 (198)
Q Consensus         1 ~g~~~L~~A~~~g-------~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~--~~~~~~~L~~~~~~~-~--------   62 (198)
                      +|+||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.+.  +.|+++.|++..... .        
T Consensus       174 ~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y  253 (631)
T PHA02792        174 MGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNY  253 (631)
T ss_pred             CCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHH
Confidence            4899999999999       899999999999999999999999999999999  888888886531100 0        


Q ss_pred             ----c------cC-------------------------------------------------------------------
Q psy14007         63 ----A------KA-------------------------------------------------------------------   65 (198)
Q Consensus        63 ----~------~~-------------------------------------------------------------------   65 (198)
                          .      .|                                                                   
T Consensus       254 ~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~  333 (631)
T PHA02792        254 LRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGAT  333 (631)
T ss_pred             HHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCc
Confidence                0      00                                                                   


Q ss_pred             ---CCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCC--CcHHHHHHhcCChH---HHHHHHhccCCCCcccCCCCCC
Q psy14007         66 ---DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRG--ATPLHRAASQGITP---VVKLLLTQRLDIDVNITDAYGN  137 (198)
Q Consensus        66 ---~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~l~~a~~~~~~~---~~~~l~~~~~~~~~~~~~~~g~  137 (198)
                         ......++.|+..++.+++++|+++|++++..+..|  .||||.|......+   ++++++++  |++++.+|..|.
T Consensus       334 ~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~--GADIN~kD~~G~  411 (631)
T PHA02792        334 LYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY--IDDINKIDKHGR  411 (631)
T ss_pred             cccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc--CCccccccccCc
Confidence               013455777888888999999999999998888764  68888877665543   56777877  567888899999


Q ss_pred             CHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCC----------hhHHHHHhhhcccccC
Q psy14007        138 TPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL----------PHLAQALTEIEPIVGD  194 (198)
Q Consensus       138 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~----------~~~~~~~~~l~~~~~~  194 (198)
                      ||||.|+..++.+++++|+++|++++.++..|.||+++|..          ....++++.+.+.+..
T Consensus       412 TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        412 SILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999864          2234556666666544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=156.58  Aligned_cols=146  Identities=18%  Similarity=0.192  Sum_probs=129.4

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHhcCCCccccCCCCCcHHHHHHhcChHH---HHHHHHhcCCCCCc
Q psy14007         24 NKSPVDPKDDTNRTPLILAAAAGKL----EIVRLLISNGADVNAKADGGHSALQYACSKGWKE---IAELLIHNHANVNI   96 (198)
Q Consensus        24 ~~~~~~~~~~~g~~~L~~A~~~~~~----~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~l~~~~~~~~~   96 (198)
                      ++++++..+..+.++||.|++.|+.    +++++|++.+..++.++..|.||||+|+..++.+   ++++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4566777778888999999999998    6666788889888889999999999999988754   48999999999999


Q ss_pred             CC-CCCCcHHHHHHhcCChHHHHHHHh-ccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCC
Q psy14007         97 QD-VRGATPLHRAASQGITPVVKLLLT-QRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKT  171 (198)
Q Consensus        97 ~~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  171 (198)
                      ++ ..|.||||+|+..++.+++++|+. .  +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.+
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~--gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQL--GVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhcc--CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            88 589999999999999999999995 5  6688889999999999999999999999999999999998887754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.4e-27  Score=178.63  Aligned_cols=192  Identities=18%  Similarity=0.136  Sum_probs=152.6

Q ss_pred             cchhHHHHHh-cCcHHHHHHHHhCCCCCC------------------------------------CCCCCCCCHHHHHHH
Q psy14007          2 ERLLIHWAAL-SGREDVVDFLLKNKSPVD------------------------------------PKDDTNRTPLILAAA   44 (198)
Q Consensus         2 g~~~L~~A~~-~g~~~~~~~l~~~~~~~~------------------------------------~~~~~g~~~L~~A~~   44 (198)
                      |++|+++|+. .|+.+++++|++.|+++.                                    ..+..|.||||+|+.
T Consensus       105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~  184 (631)
T PHA02792        105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII  184 (631)
T ss_pred             CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence            5678888865 588999999999887531                                    334568899999999


Q ss_pred             cC-------CHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC--hHHHHHHHHhc-------------------------
Q psy14007         45 AG-------KLEIVRLLISNGADVNAKADGGHSALQYACSKG--WKEIAELLIHN-------------------------   90 (198)
Q Consensus        45 ~~-------~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~l~~~-------------------------   90 (198)
                      .+       +.++++.|+++|++++.+|..|.||||+|+.+.  ..+++++|++.                         
T Consensus       185 ~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~  264 (631)
T PHA02792        185 TRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHK  264 (631)
T ss_pred             hCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccC
Confidence            88       789999999999998888888999999998887  56666655442                         


Q ss_pred             ------------------------------------------------------------------CCCCCcCCCCCCcH
Q psy14007         91 ------------------------------------------------------------------HANVNIQDVRGATP  104 (198)
Q Consensus        91 ------------------------------------------------------------------~~~~~~~~~~~~~~  104 (198)
                                                                                        |++..  ......+
T Consensus       265 id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~  342 (631)
T PHA02792        265 IDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINK  342 (631)
T ss_pred             ccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchH
Confidence                                                                              22211  0113456


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcccCCCCC--CCHHHHHHHhCCh---hhHHHHHHcCCCcceecCCCCCccccCCCh
Q psy14007        105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYG--NTPLHYACEEKRL---TDAKLLVRCGARLDIQNKEKKTPLDLLPLP  179 (198)
Q Consensus       105 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~  179 (198)
                      ++.|+..++.+++++|+++  |++++..|..|  .||||.|......   +++++|+++|++++.+|..|.||+|+|+..
T Consensus       343 ~~~Aa~~gn~eIVelLIs~--GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~  420 (631)
T PHA02792        343 YFQKFDNRDPKVVEYILKN--GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES  420 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHc--CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc
Confidence            7788889999999999998  66777777664  6999998777654   357889999999999999999999999999


Q ss_pred             hHHHHHhhhcccccCCCC
Q psy14007        180 HLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~  197 (198)
                      +..++++.|.+.+++++.
T Consensus       421 ~n~eivelLLs~GADIN~  438 (631)
T PHA02792        421 HSVSLVEWLIDNGADINI  438 (631)
T ss_pred             CCHHHHHHHHHCCCCCCC
Confidence            999999999999988763

>KOG0502|consensus

Probab=99.95  E-value=2.1e-27  Score=156.77  Aligned_cols=168  Identities=33%  Similarity=0.390  Sum_probs=153.6

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      +++|+.+++...+.+.+..+.+..  +|.+|+.|.|||.||+.+|+..++++|++.|++++...+...++|.+|++.|..
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggyt  206 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYT  206 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChH
Confidence            578999999988887776666554  678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      +++++|+.++.++|..|.+|-|||.+|++.++.+|++.|++.  |++++..+..|.+++..|+..|+. +|+..+++-++
T Consensus       207 diV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s--GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~l  283 (296)
T KOG0502|consen  207 DIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS--GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHAL  283 (296)
T ss_pred             HHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc--CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998  678999999999999999999988 88888888777


Q ss_pred             cceecCCCCCccc
Q psy14007        162 LDIQNKEKKTPLD  174 (198)
Q Consensus       162 ~~~~~~~g~t~~~  174 (198)
                      ....+..-.+|+|
T Consensus       284 kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  284 KLCQDSEKRTPLH  296 (296)
T ss_pred             HHhhcccCCCCCC
Confidence            7777777777765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=1.4e-26  Score=186.36  Aligned_cols=187  Identities=27%  Similarity=0.269  Sum_probs=117.9

Q ss_pred             chhHHHHHhcCcHHHHHHHHhC--CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhcCC--------------------
Q psy14007          3 RLLIHWAALSGREDVVDFLLKN--KSPVDPKDDTNRTPLI-LAAAAGKLEIVRLLISNGA--------------------   59 (198)
Q Consensus         3 ~~~L~~A~~~g~~~~~~~l~~~--~~~~~~~~~~g~~~L~-~A~~~~~~~~~~~L~~~~~--------------------   59 (198)
                      +..|+.|++.|+.+.++.+++.  +.+++..|..|.|||| .|+.+++.++++.|++.+.                    
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v   97 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAV   97 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHH
Confidence            4556666666666666666666  5666666666666666 6666666666666666553                    


Q ss_pred             ------------C------cc----ccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC--------------CCCCc
Q psy14007         60 ------------D------VN----AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD--------------VRGAT  103 (198)
Q Consensus        60 ------------~------~~----~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~  103 (198)
                                  .      .+    .....|.||||+|+..|+.+++++|+++|++++...              ..|.+
T Consensus        98 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~t  177 (743)
T TIGR00870        98 EAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGES  177 (743)
T ss_pred             HHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccccccc
Confidence                        0      00    011246677777777777777777777777766432              24667


Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhC---------ChhhHHHHHHcCCCc-------ceecC
Q psy14007        104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK---------RLTDAKLLVRCGARL-------DIQNK  167 (198)
Q Consensus       104 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~-------~~~~~  167 (198)
                      |+|.|+..++.+++++|++.  +.+++..|..|.||||.|+..+         ...+.+++++.++..       +..|.
T Consensus       178 pL~~Aa~~~~~~iv~lLl~~--gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~  255 (743)
T TIGR00870       178 PLNAAACLGSPSIVALLSED--PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH  255 (743)
T ss_pred             HHHHHHHhCCHHHHHHHhcC--CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCC
Confidence            77777777777777777765  4466667777777777777665         123444555444433       45567


Q ss_pred             CCCCccccCCChhHHHHHhhhccc
Q psy14007        168 EKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       168 ~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      .|.||+++|+..|+.++++.+.+.
T Consensus       256 ~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       256 QGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             CCCCchhhhhhcCCccHHHHHHHH
Confidence            777777777777777777766653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=1.3e-25  Score=149.33  Aligned_cols=134  Identities=21%  Similarity=0.227  Sum_probs=120.5

Q ss_pred             CcchhHHHHHhcCcH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH---HHHHHhcCCCccccC-CCCCcHH
Q psy14007          1 NERLLIHWAALSGRE----DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEI---VRLLISNGADVNAKA-DGGHSAL   72 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~----~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~---~~~L~~~~~~~~~~~-~~~~t~l   72 (198)
                      ++.++||.|++.|+.    +++++|++.|..++..|..|+||||+|+..++.+.   +++|+++|++++.++ ..|.|||
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpL   98 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLL   98 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHH
Confidence            467899999999998    66677888999999999999999999999987654   899999999999988 4899999


Q ss_pred             HHHHhcChHHHHHHHHh-cCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCC
Q psy14007         73 QYACSKGWKEIAELLIH-NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYG  136 (198)
Q Consensus        73 ~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g  136 (198)
                      |+|+..++.+++++|+. .|++++..+..|.||+|+|+..++.+++++|+++  +++.+.++..|
T Consensus        99 h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~  161 (166)
T PHA02743         99 HIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN--GAVCDDPLSIG  161 (166)
T ss_pred             HHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcccCC
Confidence            99999999999999995 8999999999999999999999999999999998  55777776655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.6e-25  Score=158.72  Aligned_cols=148  Identities=22%  Similarity=0.216  Sum_probs=127.1

Q ss_pred             chhHHHHHhcCcHHHHHHHHhCCCCCCCCC----CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHh
Q psy14007          3 RLLIHWAALSGREDVVDFLLKNKSPVDPKD----DTNRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACS   77 (198)
Q Consensus         3 ~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~----~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~   77 (198)
                      .++||.|++.|+.+++++|+++|++++..+    ..|.||||+|+..++.+++++|+++|++++.++ ..|.||||.|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            456888899899999999999999999873    589999999999999999999999999999864 579999999999


Q ss_pred             cChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007         78 KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                      .++.+++++|+.+|++++..+..|.||+|+|+..++..+...+...       ..+..+.+|.+.+   ++.+++++|+.
T Consensus       114 ~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~n~ei~~~Lis  183 (300)
T PHA02884        114 HGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKKIL---INFDILKILVS  183 (300)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhhhh---ccHHHHHHHHH
Confidence            9999999999999999999999999999999998888776555421       1345566788765   46899999998


Q ss_pred             cCC
Q psy14007        158 CGA  160 (198)
Q Consensus       158 ~g~  160 (198)
                      +++
T Consensus       184 h~v  186 (300)
T PHA02884        184 HFI  186 (300)
T ss_pred             HHH
Confidence            877

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=4.9e-25  Score=147.22  Aligned_cols=133  Identities=26%  Similarity=0.331  Sum_probs=117.2

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHh------cCCCccccCCCCCcHHHHHHhcCh----HHHHHHHHhcCCCCCcCC
Q psy14007         29 DPKDDTNRTPLILAAAAGKLEIVRLLIS------NGADVNAKADGGHSALQYACSKGW----KEIAELLIHNHANVNIQD   98 (198)
Q Consensus        29 ~~~~~~g~~~L~~A~~~~~~~~~~~L~~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~~~   98 (198)
                      +..+..|.||||+|++.|+.++++.|+.      .+++++.+|..|.||||+|+..++    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4567789999999999999999999854      357788899999999999999998    588999999999999988


Q ss_pred             C-CCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCc
Q psy14007         99 V-RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL  162 (198)
Q Consensus        99 ~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  162 (198)
                      . .|.||||+|+..++.+++++|+.. .+++++..+..|.||||.|+..++.+++++|+++++..
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~-~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQ-PGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5 899999999999999999999973 25678888999999999999999999999999887653

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=1.2e-24  Score=145.38  Aligned_cols=124  Identities=23%  Similarity=0.304  Sum_probs=114.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHh------CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCccccCC-CCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLK------NKSPVDPKDDTNRTPLILAAAAGK----LEIVRLLISNGADVNAKAD-GGH   69 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~------~~~~~~~~~~~g~~~L~~A~~~~~----~~~~~~L~~~~~~~~~~~~-~~~   69 (198)
                      +|.++||+|+..|+.++++.|+.      .|++++..|..|.||||+|+..++    .+++++|++.|++++.++. .|.
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~   99 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGD   99 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCC
Confidence            48899999999999999999864      357889999999999999999998    5899999999999999885 899


Q ss_pred             cHHHHHHhcChHHHHHHHHh-cCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhcc
Q psy14007         70 SALQYACSKGWKEIAELLIH-NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR  124 (198)
Q Consensus        70 t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  124 (198)
                      ||||+|+..++.+++++|+. .|++++..+..|.||+++|+..++.+++++|++..
T Consensus       100 TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741        100 TALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999997 59999999999999999999999999999999863

>KOG0505|consensus

Probab=99.93  E-value=2e-25  Score=164.10  Aligned_cols=169  Identities=38%  Similarity=0.475  Sum_probs=102.8

Q ss_pred             HHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHH
Q psy14007          8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL   87 (198)
Q Consensus         8 ~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l   87 (198)
                      -|+..|+.+-++.|+..|+.++..+.+|.|+||.+|.-.+.+||++|+++|++++..|..++||+|.|+..++..++.+|
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             hccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhcCCC-----------------------------------------------------------CCcCCCCCCcHHHHH
Q psy14007         88 IHNHAN-----------------------------------------------------------VNIQDVRGATPLHRA  108 (198)
Q Consensus        88 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~l~~a  108 (198)
                      ++.|++                                                           .+..+..|.|.+|.|
T Consensus       126 i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvA  205 (527)
T KOG0505|consen  126 IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVA  205 (527)
T ss_pred             HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHH
Confidence            554444                                                           444444466777777


Q ss_pred             HhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCC
Q psy14007        109 ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL  178 (198)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~  178 (198)
                      ...|..+..++|++.  +.+++.+|.+|.||||.|+.-|..++.++|+++|++.+..+..|.+|+++|..
T Consensus       206 aa~Gy~e~~~lLl~a--g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  206 AANGYTEVAALLLQA--GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhhhHHHHHHHHHHh--ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            777777777777766  44666667777777777777777777777777777777777777777777654

>KOG0505|consensus

Probab=99.93  E-value=4.1e-25  Score=162.50  Aligned_cols=161  Identities=32%  Similarity=0.385  Sum_probs=147.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHH
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      -.+.-|++.+..+=++.|+..|+.++..+.+|.|++|.+|...+.+|+++|+++|++++..+..++||+|.|+..|+..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccC---------------------------------------------------------CCCcccCCCCCCCH
Q psy14007        117 VKLLLTQRL---------------------------------------------------------DIDVNITDAYGNTP  139 (198)
Q Consensus       117 ~~~l~~~~~---------------------------------------------------------~~~~~~~~~~g~t~  139 (198)
                      +.+|++++.                                                         |...+..+..|-|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            999998644                                                         22234455568999


Q ss_pred             HHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       140 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      ||+|+..|..+++++|++.|.+++.+|.+|+||+|.|+..+..++.+.|.+.++++..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            9999999999999999999999999999999999999999999999999999988753

>KOG0507|consensus

Probab=99.93  E-value=1.3e-25  Score=170.98  Aligned_cols=192  Identities=25%  Similarity=0.296  Sum_probs=160.7

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.|+||.|+..|+.++++.|+++.+-++.++..|.+|||+|+..|+.++++.++.++..++..+..|.||||.++..++
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            57888999999999999999999888888888888899999999999999999988888888888889999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCC------cccCCCCCCCHHHHHHHhCChhhHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID------VNITDAYGNTPLHYACEEKRLTDAKL  154 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~  154 (198)
                      .+++.+|+.++++....+..+.|++..|++.|..++++.|+.......      -..++..+.+|+|.|+++|+.++++.
T Consensus       128 ~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~  207 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQA  207 (854)
T ss_pred             hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHH
Confidence            999999999999988888889999999999999988888877522111      11234557788999999999999999


Q ss_pred             HHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        155 LVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       155 Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      |++.|.+++...+. -|++|-|+.+|..+++..|...+.
T Consensus       208 ll~ag~din~~t~~-gtalheaalcgk~evvr~ll~~gi  245 (854)
T KOG0507|consen  208 LLEAGFDINYTTED-GTALHEAALCGKAEVVRFLLEIGI  245 (854)
T ss_pred             HHhcCCCccccccc-chhhhhHhhcCcchhhhHHHhhcc
Confidence            99999988887666 488888888888888888776654

>KOG0514|consensus

Probab=99.92  E-value=1.5e-24  Score=153.00  Aligned_cols=155  Identities=26%  Similarity=0.339  Sum_probs=79.8

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCcHHHHHHhc-----ChHHHHHHHHhcCCCCCcCC-CCC
Q psy14007         29 DPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADVNAKADGGHSALQYACSK-----GWKEIAELLIHNHANVNIQD-VRG  101 (198)
Q Consensus        29 ~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~-----~~~~~~~~l~~~~~~~~~~~-~~~  101 (198)
                      |..|.+|+|+||+|+.++++++|+.|+..| ++++.+|..|+||+.+++..     .+.+++.-|...|. +|.+- ..|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhc
Confidence            334555555555555555555555555543 45555555555555554332     23444444444432 23322 235


Q ss_pred             CcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc-CCCcceecCCCCCccccCCChh
Q psy14007        102 ATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC-GARLDIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       102 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~a~~~~  180 (198)
                      .|+|++|+..|+.++++.|+..  |.|+|.+|.+|.|+|+.|+..|+.+++++||.. ++|+..+|.+|-|+|.+|-..|
T Consensus       341 QTALMLAVSHGr~d~vk~LLac--gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLAC--GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHc--cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            5555555555555555555554  445555555555555555555555555555533 4555555555555555555555


Q ss_pred             HHHHHh
Q psy14007        181 LAQALT  186 (198)
Q Consensus       181 ~~~~~~  186 (198)
                      ..++--
T Consensus       419 h~eIa~  424 (452)
T KOG0514|consen  419 HREIAV  424 (452)
T ss_pred             chHHHH
Confidence            555433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.92  E-value=8.9e-24  Score=150.91  Aligned_cols=154  Identities=22%  Similarity=0.177  Sum_probs=128.1

Q ss_pred             CCCCCCCCC-HHHHHHHcCCHHHHHHHHhcCCCccccC----CCCCcHHHHHHhcChHHHHHHHHhcCCCCCcC-CCCCC
Q psy14007         29 DPKDDTNRT-PLILAAAAGKLEIVRLLISNGADVNAKA----DGGHSALQYACSKGWKEIAELLIHNHANVNIQ-DVRGA  102 (198)
Q Consensus        29 ~~~~~~g~~-~L~~A~~~~~~~~~~~L~~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~  102 (198)
                      ...|..+.+ +||.|++.++.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            345666665 6778888899999999999999999874    58999999999999999999999999999986 46799


Q ss_pred             cHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHH
Q psy14007        103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA  182 (198)
Q Consensus       103 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~  182 (198)
                      ||||+|+..++.+++++|+..  |++++..|..|.||||.|+..++.+++..+...+     .+..+.+|.+++.   ..
T Consensus       106 TpLh~Aa~~~~~eivklLL~~--GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---n~  175 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSY--GADINIQTNDMVTPIELALMICNNFLAFMICDNE-----ISNFYKHPKKILI---NF  175 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-----ccccccChhhhhc---cH
Confidence            999999999999999999998  6688899999999999999999888876665322     3556678888754   45


Q ss_pred             HHHhhhcccc
Q psy14007        183 QALTEIEPIV  192 (198)
Q Consensus       183 ~~~~~l~~~~  192 (198)
                      ++++.|.+.+
T Consensus       176 ei~~~Lish~  185 (300)
T PHA02884        176 DILKILVSHF  185 (300)
T ss_pred             HHHHHHHHHH
Confidence            6666655543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=141.66  Aligned_cols=133  Identities=23%  Similarity=0.230  Sum_probs=110.2

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC--C-----CccccCCCCCcHHHHHHhcChH---HHHHHHHhcCCCCCcC
Q psy14007         28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNG--A-----DVNAKADGGHSALQYACSKGWK---EIAELLIHNHANVNIQ   97 (198)
Q Consensus        28 ~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~--~-----~~~~~~~~~~t~l~~a~~~~~~---~~~~~l~~~~~~~~~~   97 (198)
                      ++..|..|.||||+|++.|+.+  ..+...+  .     .+..+|..|.||||+|+..+..   +++++|++.|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            3456788999999999999842  3332221  1     1334688999999999999876   5688999999999998


Q ss_pred             C-CCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007         98 D-VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus        98 ~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                      + ..|.||||+|+..++.+++++|+.+. +.+++..+..|.||||+|+..++.+++++|+++|++.+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~-g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQP-GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8 48999999999999999999999742 56888899999999999999999999999999999865

>KOG0507|consensus

Probab=99.91  E-value=1.6e-24  Score=165.11  Aligned_cols=175  Identities=29%  Similarity=0.379  Sum_probs=160.1

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |..|||+|+..|+.++++.++.++..++.....|.+|||.|+++|+.+++.+|+++++++-.++..+.|++..|++.|..
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhh
Confidence            67899999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC--------CCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         82 EIAELLIHNHAN--------VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        82 ~~~~~l~~~~~~--------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      ++++.|++....        -..++..+.+|+|.|+++|+.++++.|++.  |.+++.....| |+||.|+..|..++|+
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a--g~din~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA--GFDINYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc--CCCcccccccc-hhhhhHhhcCcchhhh
Confidence            999999875322        123445678999999999999999999987  77888888877 9999999999999999


Q ss_pred             HHHHcCCCcceecCCCCCccccCCCh
Q psy14007        154 LLVRCGARLDIQNKEKKTPLDLLPLP  179 (198)
Q Consensus       154 ~Ll~~g~~~~~~~~~g~t~~~~a~~~  179 (198)
                      +|++-|.+..++|.+|+|++++....
T Consensus       239 ~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  239 FLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             HHHhhccccccccccchHHHHHHHhc
Confidence            99999999999999999999887654

>KOG0514|consensus

Probab=99.91  E-value=1.7e-24  Score=152.65  Aligned_cols=156  Identities=38%  Similarity=0.471  Sum_probs=142.9

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHc-----CCHHHHHHHHhcCCCccccC-CCCCcHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKS-PVDPKDDTNRTPLILAAAA-----GKLEIVRLLISNGADVNAKA-DGGHSALQ   73 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~-~~~~~~~~g~~~L~~A~~~-----~~~~~~~~L~~~~~~~~~~~-~~~~t~l~   73 (198)
                      ||+|+||||+.++++++|+.|++.|. ++|..+..|.||++.++..     .+.++|..|.+.| ++|.+- ..|+|+|.
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALM  345 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALM  345 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhh
Confidence            89999999999999999999999985 6899999999999998875     3688899998875 566554 47999999


Q ss_pred             HHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         74 YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        74 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      +|..+|+.++++.|+..|+++|.+|.+|-|+|++|+..|+.+++++|+.. +.+++...|.+|.|+|.+|...|+.++.-
T Consensus       346 LAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-p~cd~sLtD~DgSTAl~IAleagh~eIa~  424 (452)
T KOG0514|consen  346 LAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-PSCDISLTDVDGSTALSIALEAGHREIAV  424 (452)
T ss_pred             hhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-CcccceeecCCCchhhhhHHhcCchHHHH
Confidence            99999999999999999999999999999999999999999999999986 58999999999999999999999999998


Q ss_pred             HHHHc
Q psy14007        154 LLVRC  158 (198)
Q Consensus       154 ~Ll~~  158 (198)
                      +|-.+
T Consensus       425 mlYa~  429 (452)
T KOG0514|consen  425 MLYAH  429 (452)
T ss_pred             HHHHH
Confidence            88654

>KOG0512|consensus

Probab=99.91  E-value=2.6e-23  Score=132.66  Aligned_cols=140  Identities=28%  Similarity=0.307  Sum_probs=84.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCC-CccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHH
Q psy14007         38 PLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        38 ~L~~A~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      .+.+|+..+....|+.|++..+ .++.+|.+++||||-|+.+|+.++++.|+..|++.+.+...|+||||.||.+++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            3456666666666666665443 355666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhccCCCCcccCCCCCCCHHHHHHHhCCh-hhHHHHH-HcCCCcceecCCCCCccccCCCh
Q psy14007        117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRL-TDAKLLV-RCGARLDIQNKEKKTPLDLLPLP  179 (198)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll-~~g~~~~~~~~~g~t~~~~a~~~  179 (198)
                      +-.|+++  |.+++....-..||||.|+...+. ..+++|+ ..+.++..++..+.||+.+|-+.
T Consensus       146 a~~LLqh--gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  146 AGRLLQH--GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHhc--cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            6666666  445555555556666666665543 2334443 34566666666666666666544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=138.16  Aligned_cols=123  Identities=21%  Similarity=0.257  Sum_probs=105.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCC--C-----CCCCCCCCCCHHHHHHHcCCH---HHHHHHHhcCCCccccCC-CCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKS--P-----VDPKDDTNRTPLILAAAAGKL---EIVRLLISNGADVNAKAD-GGH   69 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~--~-----~~~~~~~g~~~L~~A~~~~~~---~~~~~L~~~~~~~~~~~~-~~~   69 (198)
                      +|.||||+|+..|+..  ..+...+.  +     +...+..|.||||+|+..++.   +++++|++.|++++.++. .|.
T Consensus        16 ~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~   93 (154)
T PHA02736         16 EGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN   93 (154)
T ss_pred             CCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence            5899999999999843  33322221  1     234688999999999999986   568899999999999884 899


Q ss_pred             cHHHHHHhcChHHHHHHHHh-cCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccC
Q psy14007         70 SALQYACSKGWKEIAELLIH-NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL  125 (198)
Q Consensus        70 t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  125 (198)
                      ||||+|+..++.+++++|+. .|++++..+..|.||+|+|+..++.+++++|++++.
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999997 599999999999999999999999999999999854

>KOG0512|consensus

Probab=99.90  E-value=6.3e-23  Score=130.94  Aligned_cols=141  Identities=33%  Similarity=0.422  Sum_probs=126.7

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHH
Q psy14007          6 IHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIA   84 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~-~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   84 (198)
                      +-+|+..+....|+.|++..++ ++.+|.+|.||||.|+++|+.++++.|+.+|++++.+...|.||||-||+-++++++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            6789999999999999988765 789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcCCCCCCcHHHHHHhcCChH-HHHHHHhccCCCCcccCCCCCCCHHHHHHHhC
Q psy14007         85 ELLIHNHANVNIQDVRGATPLHRAASQGITP-VVKLLLTQRLDIDVNITDAYGNTPLHYACEEK  147 (198)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~  147 (198)
                      .+|+++|+++++......||||.++...+.. .+.+|+. ...++....+..+.||+.+|-+.+
T Consensus       147 ~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~-dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  147 GRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH-DRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh-ccccChhhhcCccchHHHHHHHhh
Confidence            9999999999999999999999999877654 4556554 346777778888999999987764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=9.9e-23  Score=164.26  Aligned_cols=142  Identities=28%  Similarity=0.266  Sum_probs=114.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC--------------CCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC
Q psy14007         33 DTNRTPLILAAAAGKLEIVRLLISNGADVNAKA--------------DGGHSALQYACSKGWKEIAELLIHNHANVNIQD   98 (198)
Q Consensus        33 ~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~   98 (198)
                      ..|.||||.|+..++.++++.|+++|++++.+.              ..|.||||.|+..++.+++++|+++|++++..|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            358999999999999999999999999987542              258899999999999999999999999999999


Q ss_pred             CCCCcHHHHHHhcC---------ChHHHHHHHhccCCC-Cc----ccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcce
Q psy14007         99 VRGATPLHRAASQG---------ITPVVKLLLTQRLDI-DV----NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI  164 (198)
Q Consensus        99 ~~~~~~l~~a~~~~---------~~~~~~~l~~~~~~~-~~----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  164 (198)
                      ..|+||+|+|+..+         ...+.+.+++.+... +.    +..|.+|.||||.|+..|+.+++++|++.++....
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk  285 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKK  285 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcce
Confidence            99999999999986         223555565543221 22    55788999999999999999999999996655444


Q ss_pred             ecCCCCCccc
Q psy14007        165 QNKEKKTPLD  174 (198)
Q Consensus       165 ~~~~g~t~~~  174 (198)
                      .......|.+
T Consensus       286 ~~a~~~~~~~  295 (743)
T TIGR00870       286 FVAWPNGQQL  295 (743)
T ss_pred             eeccCcchHh
Confidence            3444444433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.89  E-value=6.1e-22  Score=118.63  Aligned_cols=89  Identities=42%  Similarity=0.693  Sum_probs=80.3

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHH
Q psy14007          6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAE   85 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~   85 (198)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999887776    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcCC
Q psy14007         86 LLIHNHANVNIQD   98 (198)
Q Consensus        86 ~l~~~~~~~~~~~   98 (198)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999887754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.88  E-value=6.4e-21  Score=121.22  Aligned_cols=121  Identities=50%  Similarity=0.725  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcC
Q psy14007         33 DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG  112 (198)
Q Consensus        33 ~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~  112 (198)
                      ..|.||||+|+..++.+++++|++.+...+..+..|.+|++.|+..++.+++++|++.++.++..+..+.+|+|+|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            44555555555555555555555555554445555555555555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHH
Q psy14007        113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL  155 (198)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  155 (198)
                      +.+++++|+++  +.+.+..+..+.||++.|+..++.+++++|
T Consensus        85 ~~~~~~~L~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          85 NLDVVKLLLKH--GADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            55555555554  233444555555555555555555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.87  E-value=1e-21  Score=151.13  Aligned_cols=186  Identities=27%  Similarity=0.259  Sum_probs=156.6

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCC---------CCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCC----cc-ccCC
Q psy14007          4 LLIHWAALSGREDVVDFLLKNK---------SPVDPKDDTNRTPLILAAAA---GKLEIVRLLISNGAD----VN-AKAD   66 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~---------~~~~~~~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~----~~-~~~~   66 (198)
                      .++..|...+..+.+..+...+         .+++.+...|.|+||.|.-+   ++.++++.|++..+.    +. .-..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4566677777777777776655         45666777899999999984   456889999885332    11 1234


Q ss_pred             CCCcHHHHHHhcChHHHHHHHHhcCCCCCcC---------C---C-----------CCCcHHHHHHhcCChHHHHHHHhc
Q psy14007         67 GGHSALQYACSKGWKEIAELLIHNHANVNIQ---------D---V-----------RGATPLHRAASQGITPVVKLLLTQ  123 (198)
Q Consensus        67 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~---------~---~-----------~~~~~l~~a~~~~~~~~~~~l~~~  123 (198)
                      .|.|+||+|+.+.+.+++.+|++.|++++++         |   .           .|+.||..|++.++.+++.+|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            7999999999999999999999999997652         1   1           378899999999999999999998


Q ss_pred             cCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC--cceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR--LDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       124 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                        ++|++.+|++|+|.||.++..-..++..+++++|++  ...+|+.|.||+.+|+..|+.++++.+.+.
T Consensus       263 --gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 --GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             --CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence              779999999999999999999999999999999999  899999999999999999999999998876

>KOG0195|consensus

Probab=99.87  E-value=3e-22  Score=137.88  Aligned_cols=141  Identities=30%  Similarity=0.422  Sum_probs=121.3

Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCC
Q psy14007         21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR  100 (198)
Q Consensus        21 l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  100 (198)
                      |-+...+++.-|..|.+|||||++.|+..+++.|++.|+.+|..+....||||+|+..|+-++++.|+++.+++++.+..
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavneh   99 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH   99 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc
Confidence            33445678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007        101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus       101 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                      |.|||||||..|...+.+-|+..  |+..+.-++.|.|||..|--.-...+.+.--+.|-+++
T Consensus       100 gntplhyacfwgydqiaedli~~--ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISC--GAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhc--cceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999988  66788899999999998754433333344445565543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.86  E-value=3.6e-20  Score=117.72  Aligned_cols=121  Identities=47%  Similarity=0.699  Sum_probs=101.4

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.||||+|+..|+.+++++|++.+.+.+..+..|.+|+|.|+..++.+++++|++.+..++..+..+.||+|.|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence            47888888888888888888888888777778888888888888888888888888887777777788888888888888


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL  121 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~  121 (198)
                      .+++++|++.+.+.+..+..+.+|+++|...++.+++++|+
T Consensus        86 ~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          86 LDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888778888888888888888888888887764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.84  E-value=2.8e-20  Score=111.41  Aligned_cols=81  Identities=48%  Similarity=0.729  Sum_probs=41.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHH
Q psy14007         39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK  118 (198)
Q Consensus        39 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  118 (198)
                      ||+|++.++.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            4555555555555555555444433    445555555555555555555555555555555555555555555555555


Q ss_pred             HHHhc
Q psy14007        119 LLLTQ  123 (198)
Q Consensus       119 ~l~~~  123 (198)
                      +|+++
T Consensus        77 ~Ll~~   81 (89)
T PF12796_consen   77 LLLEH   81 (89)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            55544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369|consensus

Probab=99.84  E-value=3.6e-21  Score=152.43  Aligned_cols=195  Identities=27%  Similarity=0.334  Sum_probs=124.2

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc-cCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA-KADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~a~~~~~   80 (198)
                      -.++|..||..|+.|+++.|+..|+++..+|+.|.+||.+|+-.||..+|+.|+++.++++. .|..+.|+|.+||..|+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr  836 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR  836 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc
Confidence            35677788888888888888888888888888888888887777777777777776666654 34456666666666666


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCC-----------------------
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN-----------------------  137 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~-----------------------  137 (198)
                      .+++++|+..|++-..++....||+.+|..-|..+++..|+..|..++-..-.+.|.                       
T Consensus       837 ~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  837 TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence            666666666666555555555555555555555555555554432222222223344                       


Q ss_pred             -----------CHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        138 -----------TPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       138 -----------t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                                 |.|.+|+..|+.+++.+||.+.+++.++.+.|.|||.-++..|.+++-..|+..++|.+
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccc
Confidence                       55555555555555555555555666677777777777777777777777777666654

>KOG0195|consensus

Probab=99.84  E-value=4.5e-21  Score=132.16  Aligned_cols=124  Identities=40%  Similarity=0.545  Sum_probs=114.4

Q ss_pred             HHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC
Q psy14007         54 LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD  133 (198)
Q Consensus        54 L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  133 (198)
                      |-+..-+.|.-|..|.+|||+|++.|+..+++.|+..|+.++..+.-..||||.|+..|+.++++.|++.  ..+++..+
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~--kadvnavn   97 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR--KADVNAVN   97 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHH--hcccchhh
Confidence            3344556777888999999999999999999999999999999999999999999999999999999998  55889999


Q ss_pred             CCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCCh
Q psy14007        134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLP  179 (198)
Q Consensus       134 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~  179 (198)
                      ..|.||||+||.-|...+.+-|+..|+.+++-|+.|.||++.|.-.
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH
Confidence            9999999999999999999999999999999999999999998643

>KOG3676|consensus

Probab=99.83  E-value=8.9e-20  Score=140.64  Aligned_cols=183  Identities=24%  Similarity=0.281  Sum_probs=148.4

Q ss_pred             cchhHHHHHhcC---cHHHHHHHHhCCCC----CCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC--------
Q psy14007          2 ERLLIHWAALSG---REDVVDFLLKNKSP----VDPK-DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA--------   65 (198)
Q Consensus         2 g~~~L~~A~~~g---~~~~~~~l~~~~~~----~~~~-~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~--------   65 (198)
                      |.|.||.|..+.   +-++++.|++.-..    +... ...|.||||+|+.+.+.++|++|++.|++++.+-        
T Consensus       143 GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~  222 (782)
T KOG3676|consen  143 GETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPD  222 (782)
T ss_pred             hhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcc
Confidence            789999999843   35889999986543    2222 2469999999999999999999999999986431        


Q ss_pred             ---------------CCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcc
Q psy14007         66 ---------------DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVN  130 (198)
Q Consensus        66 ---------------~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~  130 (198)
                                     +.|..||-+|+-.++.+++++|+++|++++.+|..|+|.||.++..-..++..++++.+......
T Consensus       223 dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~  302 (782)
T KOG3676|consen  223 DQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEH  302 (782)
T ss_pred             cccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence                           13779999999999999999999999999999999999999999998899999999985432377


Q ss_pred             cCCCCCCCHHHHHHHhCChhhHHHHHHc-C-------------CCcceecC--CCCCccccCCChhHHHH
Q psy14007        131 ITDAYGNTPLHYACEEKRLTDAKLLVRC-G-------------ARLDIQNK--EKKTPLDLLPLPHLAQA  184 (198)
Q Consensus       131 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g-------------~~~~~~~~--~g~t~~~~a~~~~~~~~  184 (198)
                      ..+.+|-|||..|++.|+.++.+.++++ +             .+.+..|.  +..+.+.+.+.....+.
T Consensus       303 v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~eH  372 (782)
T KOG3676|consen  303 VRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNEH  372 (782)
T ss_pred             ccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCCcHHH
Confidence            8999999999999999999999999987 2             23444443  34566777765544433

>KOG4369|consensus

Probab=99.80  E-value=2.3e-20  Score=147.97  Aligned_cols=193  Identities=24%  Similarity=0.309  Sum_probs=122.2

Q ss_pred             chhHHHHHhcCcHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc------------------
Q psy14007          3 RLLIHWAALSGREDVVDFLLKNKSPVDPK--DDTNRTPLILAAAAGKLEIVRLLISNGADVN------------------   62 (198)
Q Consensus         3 ~~~L~~A~~~g~~~~~~~l~~~~~~~~~~--~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~------------------   62 (198)
                      .+||..|...|..++++.|+.+|.+++.+  .+.|.+||..|.+.|+.+..+.|++.|.++|                  
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            35555555555555555555555554433  2345555555555555555555555554444                  


Q ss_pred             ----------------ccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCC--CCCcHHHHHHhcCChHHHHHHHhcc
Q psy14007         63 ----------------AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV--RGATPLHRAASQGITPVVKLLLTQR  124 (198)
Q Consensus        63 ----------------~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~l~~~~  124 (198)
                                      .+-+.|.|||.-++..|..++-++|+..|++.+....  .-.|.+.+++..|+...+..|++. 
T Consensus       938 r~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~- 1016 (2131)
T KOG4369|consen  938 RPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG- 1016 (2131)
T ss_pred             cchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCC-
Confidence                            4444455555555555555555555555555444321  223455555555555555555553 


Q ss_pred             CCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       125 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                       +...+.++++|.|+|..|+.-|....+..|+++++|++..|.+..+++..|.+.|..++|+++.+....+|.
T Consensus      1017 -~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~atqfps 1088 (2131)
T KOG4369|consen 1017 -DATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPPATQFPS 1088 (2131)
T ss_pred             -ccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCchhcCCc
Confidence             334566778888888888888888888888888888888888888888888888888888888888777764

>KOG4214|consensus

Probab=99.76  E-value=5e-18  Score=97.36  Aligned_cols=108  Identities=25%  Similarity=0.329  Sum_probs=83.1

Q ss_pred             HHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChh
Q psy14007         71 ALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT  150 (198)
Q Consensus        71 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~  150 (198)
                      -+.++.++|..+-++-....|.+++..- .|++|+|+|+-+|+.+++++|+..  |++++.+|+.|.|||-.|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHHhhHH
Confidence            3566777777777777777776665433 678888888888888888888877  5677788888888888888888888


Q ss_pred             hHHHHHHcCCCcceecCCCCCccccCCChhH
Q psy14007        151 DAKLLVRCGARLDIQNKEKKTPLDLLPLPHL  181 (198)
Q Consensus       151 ~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~  181 (198)
                      ||++|+++|++...+..+|.+.++.+-....
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eate~edI  112 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEATEEEDI  112 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhccHHHH
Confidence            8888888888888888888887776654433

>KOG4214|consensus

Probab=99.75  E-value=9.1e-18  Score=96.32  Aligned_cols=102  Identities=29%  Similarity=0.424  Sum_probs=83.5

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI   83 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   83 (198)
                      .-+.|+++.|.++-|+..+..|.+++..- .|++|||+|+-.|+.+++++|+..|++++.+|+.|.|||..|...|+.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            34678888888888888888887776654 68888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcCCCCCcCCCCCCcHHH
Q psy14007         84 AELLIHNHANVNIQDVRGATPLH  106 (198)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~~~l~  106 (198)
                      +++|+++|++-.....+|.+.+.
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHh
Confidence            88888888887776666665544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=111.69  Aligned_cols=129  Identities=41%  Similarity=0.559  Sum_probs=107.7

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh-----HHHHHHHHhcCC---CCCcCCCC
Q psy14007         29 DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW-----KEIAELLIHNHA---NVNIQDVR  100 (198)
Q Consensus        29 ~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~~~---~~~~~~~~  100 (198)
                      ...+..+.++++.++..+..+++++++..+.+++.++..|.||+|+|+..++     .+++++|++.|+   ..+..+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3455567788888888888888888888888888888888888888888888     888888888888   55666888


Q ss_pred             CCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007        101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus       101 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      |.||+|+|+..|..++++.+++.  +.+++..+..|.|+++.|+..++.+++..+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA--GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc--CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            88888888888888888888887  5567777888889999999988888888888864

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.71  E-value=3.8e-16  Score=109.16  Aligned_cols=130  Identities=35%  Similarity=0.383  Sum_probs=117.4

Q ss_pred             cccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC-----hHHHHHHHhccCC-CCcccCCCC
Q psy14007         62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI-----TPVVKLLLTQRLD-IDVNITDAY  135 (198)
Q Consensus        62 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~~-~~~~~~~~~  135 (198)
                      ...+..+.++++.++..+..+.+.+++..+++++..+..|.||+|+|+..++     .++++.|++.+.. ...+..+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3456678899999999999999999999999999999999999999999999     9999999998431 256667999


Q ss_pred             CCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       136 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      |.||||+|+..|+.++++.|++.|++++.++..|.|+++.|+..+..+++..+...
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999988875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.71  E-value=4.3e-17  Score=87.84  Aligned_cols=54  Identities=39%  Similarity=0.747  Sum_probs=40.0

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI   55 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~   55 (198)
                      |+||||+|+..|+.+++++|+++|.+++..|.+|.||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888875

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.69  E-value=2.7e-16  Score=125.00  Aligned_cols=104  Identities=29%  Similarity=0.416  Sum_probs=95.5

Q ss_pred             hHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHH
Q psy14007          5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIA   84 (198)
Q Consensus         5 ~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   84 (198)
                      .|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-------CCCCCcCCCCCCcHHHHH
Q psy14007         85 ELLIHN-------HANVNIQDVRGATPLHRA  108 (198)
Q Consensus        85 ~~l~~~-------~~~~~~~~~~~~~~l~~a  108 (198)
                      ++|+++       +++.+..+..|.+|+...
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999998       777777777666665443

>KOG1710|consensus

Probab=99.66  E-value=1.2e-15  Score=105.38  Aligned_cols=121  Identities=25%  Similarity=0.289  Sum_probs=112.7

Q ss_pred             chhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc-cCCCCCcHHHHHHhcChH
Q psy14007          3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA-KADGGHSALQYACSKGWK   81 (198)
Q Consensus         3 ~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~a~~~~~~   81 (198)
                      .++|..++..|+.+-...|++.-.+++..|.+|.++|..|++.|+.++++.|++.|+++|. ++..++|||++|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            5789999999999999999998778999999999999999999999999999999999987 445789999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhc
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ  123 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  123 (198)
                      ++.++|++.|+.....+.-|+|+-..|+.-|+.+++..+-++
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999999999999998877653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.64  E-value=9.5e-16  Score=82.58  Aligned_cols=54  Identities=46%  Similarity=0.799  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHH
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI   88 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~   88 (198)
                      |.||||+|++.|+.+++++|++.+.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=4.7e-16  Score=84.19  Aligned_cols=55  Identities=47%  Similarity=0.701  Sum_probs=29.6

Q ss_pred             HHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy14007         21 LLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYA   75 (198)
Q Consensus        21 l~~~~-~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a   75 (198)
                      |+++| .+++..|..|.||||+|+++|+.+++++|++.|++++.+|..|.||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46666 77888888888888888888888888888888888888888888888876

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=2e-16  Score=85.66  Aligned_cols=56  Identities=39%  Similarity=0.612  Sum_probs=32.5

Q ss_pred             HHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccC
Q psy14007        120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLL  176 (198)
Q Consensus       120 l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a  176 (198)
                      |++++ ..+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            35554 467888999999999999999999999999999999999999999999986

>KOG0515|consensus

Probab=99.61  E-value=3.5e-15  Score=110.73  Aligned_cols=88  Identities=33%  Similarity=0.388  Sum_probs=45.6

Q ss_pred             HHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHH
Q psy14007          9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI   88 (198)
Q Consensus         9 A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~   88 (198)
                      |+.-|.+++|+.++..-.++...+..|.|+||.|+..||+++|++|++.|+++|..|.+|+||||.|+.+++.-+++.|+
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLV  636 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLV  636 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHH
Confidence            44445555555555554445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCCCCCc
Q psy14007         89 HNHANVNI   96 (198)
Q Consensus        89 ~~~~~~~~   96 (198)
                      +.|+.+.+
T Consensus       637 e~GaavfA  644 (752)
T KOG0515|consen  637 ESGAAVFA  644 (752)
T ss_pred             hccceEEe
Confidence            55544433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.61  E-value=7.2e-15  Score=116.97  Aligned_cols=103  Identities=32%  Similarity=0.328  Sum_probs=63.4

Q ss_pred             HHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhh
Q psy14007         72 LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD  151 (198)
Q Consensus        72 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  151 (198)
                      |+.|+..|+.+.+++|++.|++++..+..|.||||+|+..|+.+++++|++.  |.+++..|..|.||||+|+..++.++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            5556666666666666666666666666666666666666666666666665  44555666666666666666666666


Q ss_pred             HHHHHHc-------CCCcceecCCCCCccccC
Q psy14007        152 AKLLVRC-------GARLDIQNKEKKTPLDLL  176 (198)
Q Consensus       152 ~~~Ll~~-------g~~~~~~~~~g~t~~~~a  176 (198)
                      +++|+++       |++.+..+..|.+|+..+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            6666665       555555555555554433

>KOG0515|consensus

Probab=99.57  E-value=1.5e-14  Score=107.49  Aligned_cols=118  Identities=33%  Similarity=0.308  Sum_probs=102.5

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHH
Q psy14007         39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK  118 (198)
Q Consensus        39 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  118 (198)
                      |.-|+..|-+++|+.++..-.++...+..|.|+||-|+..|+.++++||++.|+++|..|.+||||||+|+..+++.++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            45588889999999999988888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCcccCCCCCCCHHHHHHH--hCChhhHHHHHH
Q psy14007        119 LLLTQRLDIDVNITDAYGNTPLHYACE--EKRLTDAKLLVR  157 (198)
Q Consensus       119 ~l~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~  157 (198)
                      .|++.|. +.+-..-+++.|+...|=.  .|...|.++|..
T Consensus       634 qLVe~Ga-avfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGA-AVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccc-eEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999863 3333444667888887644  577889998863

>KOG1710|consensus

Probab=99.41  E-value=4.6e-12  Score=87.95  Aligned_cols=121  Identities=27%  Similarity=0.278  Sum_probs=107.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhcCC
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQGI  113 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~  113 (198)
                      -..||.-++-.+..+-+..|++..-+++.+|..|.++|..|+..|+.+++++|++.|+++|... ..+.|||+.|+-+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            3578999999999999999998766788999999999999999999999999999999998754 467899999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                      .++...|++.  |+.....++-|+|+-.+|+.-|+.++|..+-.
T Consensus        92 ~dvcrlllda--Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   92 QDVCRLLLDA--GARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             chHHHHHHhc--cCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999987  55667788889999999999999999987753

>PF13606 Ank_3: Ankyrin repeat

Probab=99.24  E-value=1.4e-11  Score=57.29  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=20.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVD   29 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~   29 (198)
                      ||+||||+|+..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            56777777777777777777777776654

>KOG0783|consensus

Probab=99.21  E-value=1.4e-11  Score=96.53  Aligned_cols=82  Identities=30%  Similarity=0.424  Sum_probs=47.4

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCC-CCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q psy14007         29 DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR  107 (198)
Q Consensus        29 ~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  107 (198)
                      +..|..|+|+||+|+..+..++++||+++|+++..+|. .|.||||-|+.+|+.+++-.|+.+|..+...|..|.+||..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence            44555555566655555555555666555555555554 45555666655566555555555555555555555555555


Q ss_pred             HHh
Q psy14007        108 AAS  110 (198)
Q Consensus       108 a~~  110 (198)
                      .++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            554

>KOG0506|consensus

Probab=99.20  E-value=3.3e-11  Score=88.89  Aligned_cols=89  Identities=28%  Similarity=0.385  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHh-cCCCCCcCCCCCCcHHHHHHhcC
Q psy14007         34 TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIH-NHANVNIQDVRGATPLHRAASQG  112 (198)
Q Consensus        34 ~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~  112 (198)
                      .+...+.+|++.|+...++.+.-+|.+++.+|.+.+|+||.|+..|+.+++++|++ .+.+++.+|+.|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            34445555555555555555555555555555555555555555555555555553 34455555555555555555555


Q ss_pred             ChHHHHHHHh
Q psy14007        113 ITPVVKLLLT  122 (198)
Q Consensus       113 ~~~~~~~l~~  122 (198)
                      +.+++++|-+
T Consensus       585 h~~v~k~L~~  594 (622)
T KOG0506|consen  585 HKEVVKLLEE  594 (622)
T ss_pred             cHHHHHHHHH
Confidence            5555555544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.18  E-value=4.9e-11  Score=57.06  Aligned_cols=32  Identities=31%  Similarity=0.616  Sum_probs=22.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKD   32 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~   32 (198)
                      ||+||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            56777777777777777777777777766654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=99.10  E-value=2.9e-11  Score=94.77  Aligned_cols=83  Identities=31%  Similarity=0.420  Sum_probs=60.9

Q ss_pred             ccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCH
Q psy14007         61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP  139 (198)
Q Consensus        61 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~  139 (198)
                      .+.+|..|+|+||+++..+..++++||+++|+++..+| ..|+||||-|+.+|+.+++..|+.+  |..+.+.|+.|..|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~--g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK--GRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc--CCceEEecccCCCH
Confidence            45567777777777777777777777777777777776 3577777777777777777777776  45667777777777


Q ss_pred             HHHHHH
Q psy14007        140 LHYACE  145 (198)
Q Consensus       140 l~~a~~  145 (198)
                      |...++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            766555

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=1.5e-10  Score=53.74  Aligned_cols=29  Identities=38%  Similarity=0.599  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007        135 YGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus       135 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999999876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.07  E-value=2.1e-10  Score=54.81  Aligned_cols=33  Identities=39%  Similarity=0.665  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHhCChhhHHHHHHcCCCcceecC
Q psy14007        135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK  167 (198)
Q Consensus       135 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  167 (198)
                      +|.||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999988764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=99.02  E-value=2.4e-09  Score=79.67  Aligned_cols=85  Identities=29%  Similarity=0.371  Sum_probs=74.2

Q ss_pred             hHHHHHhcCcHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHH
Q psy14007          5 LIHWAALSGREDVVDFLLKNKSPVDPKDD-TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI   83 (198)
Q Consensus         5 ~L~~A~~~g~~~~~~~l~~~~~~~~~~~~-~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   83 (198)
                      .||..++.|+.++.-.|+..|+++|+.+. .|.||||+|++.|+..=++.|.-+|+++...|..|.||+.+|-..|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            48899999999999999999999988765 68899999999999999999999999999999999999999999888777


Q ss_pred             HHHHHh
Q psy14007         84 AELLIH   89 (198)
Q Consensus        84 ~~~l~~   89 (198)
                      .+-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            665544

>KOG0782|consensus

Probab=99.00  E-value=5.9e-10  Score=84.38  Aligned_cols=115  Identities=23%  Similarity=0.207  Sum_probs=97.2

Q ss_pred             HhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHH
Q psy14007         76 CSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL  155 (198)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  155 (198)
                      ...+.+--++....+|.++-.++.+..+.||+|+..|+-++++|++++++..-++..|..|.|+||.|+-.++..+.++|
T Consensus       874 v~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~l  953 (1004)
T KOG0782|consen  874 VLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLL  953 (1004)
T ss_pred             HHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHH
Confidence            33334333445556788888888889999999999999999999999987666778889999999999999999999999


Q ss_pred             HHcCCCcceecCCCCCccccCCChhHHHHHhhhcc
Q psy14007        156 VRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEP  190 (198)
Q Consensus       156 l~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~  190 (198)
                      .+.|+.+..+|..|.||-.-|...+..++.-+|+.
T Consensus       954 vdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  954 VDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            99999999999999999999988888888777654

>KOG0818|consensus

Probab=99.00  E-value=3.4e-09  Score=78.93  Aligned_cols=85  Identities=31%  Similarity=0.316  Sum_probs=74.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCC-CCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHH
Q psy14007         38 PLILAAAAGKLEIVRLLISNGADVNAKAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        38 ~L~~A~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      -||.+++.|+.++.-.|+..|+++|..+. .|.||||.|++.|+.--+++|.-+|+++...|..|.||+.+|...|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            48889999999999899999999887665 68899999999999999999999999999999999999999999998877


Q ss_pred             HHHHHh
Q psy14007        117 VKLLLT  122 (198)
Q Consensus       117 ~~~l~~  122 (198)
                      .+.|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            666655

>KOG0782|consensus

Probab=98.97  E-value=3.7e-09  Score=80.20  Aligned_cols=118  Identities=25%  Similarity=0.313  Sum_probs=86.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCC--CCcCCCCCCcHHHHHHhcCChHH
Q psy14007         39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN--VNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        39 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      +..|+..+++--++..-..|..+-.++.+..+.||+|+..|+-+++++++++|..  ++..+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4445555544444444455666666777777888888888888888888887765  45566778888888888888888


Q ss_pred             HHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007        117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .++|++.  |..+...|..|.||-.-|-+.|..+++.+|-.+
T Consensus       950 c~~lvda--gasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDA--GASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhc--chhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            8888876  556777788888888888888888888877654

>KOG0506|consensus

Probab=98.95  E-value=1.4e-09  Score=80.61  Aligned_cols=91  Identities=29%  Similarity=0.326  Sum_probs=57.8

Q ss_pred             CCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHh
Q psy14007         67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE  146 (198)
Q Consensus        67 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~  146 (198)
                      .+...+.+|++.|....++-+.-.|.++...|-+.+|+||.|+..|+.+++++|++. .+.+++.+|.+|+|||.-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~-~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA-CKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHH-HcCCCChhhccCCCcchHhHhc
Confidence            344556666666666666655556666666666666666666666666666666664 2555666666666666666666


Q ss_pred             CChhhHHHHHHc
Q psy14007        147 KRLTDAKLLVRC  158 (198)
Q Consensus       147 ~~~~~~~~Ll~~  158 (198)
                      ++.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            666666666554

>KOG3609|consensus

Probab=98.91  E-value=1e-08  Score=81.03  Aligned_cols=126  Identities=23%  Similarity=0.275  Sum_probs=97.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC----CCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHh
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNG----ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS  110 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~----~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  110 (198)
                      +.--...|+..|+...++..++..    .++|.+|.-|+++++.|..+.+.++.++|++++...       ..++.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            344567788889888888887742    456778888999999999999999999999886655       238889999


Q ss_pred             cCChHHHHHHHhccCCCC--------cccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecC
Q psy14007        111 QGITPVVKLLLTQRLDID--------VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK  167 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~--------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  167 (198)
                      .|..+.++.++++..+..        ....-.-+.||+..|+..+++||+++|+++|+++.....
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence            999999999988643321        011223467999999999999999999999998754433

>KOG0522|consensus

Probab=98.86  E-value=1.2e-08  Score=76.71  Aligned_cols=85  Identities=35%  Similarity=0.534  Sum_probs=72.3

Q ss_pred             hHHHHHhcCcHHHHHHHHh--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHH
Q psy14007          5 LIHWAALSGREDVVDFLLK--NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE   82 (198)
Q Consensus         5 ~L~~A~~~g~~~~~~~l~~--~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~   82 (198)
                      |||+++...+.+-+...+.  ....++..|..|.||||.|++.|+.+.++.|+..|+++..+|..|.++||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4899998888776666443  34568888999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHh
Q psy14007         83 IAELLIH   89 (198)
Q Consensus        83 ~~~~l~~   89 (198)
                      ++..++.
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            8776665

>KOG0522|consensus

Probab=98.85  E-value=2.6e-09  Score=80.13  Aligned_cols=87  Identities=28%  Similarity=0.371  Sum_probs=53.3

Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHH
Q psy14007        104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQ  183 (198)
Q Consensus       104 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~  183 (198)
                      |+|.+......+-++..+.......++..|..|.||||.|+..|+.+.++.|+..|+++..+|+.|++|+|-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            36666655555444443332234455566666666666666666666666666666666666666666666666666666


Q ss_pred             HHhhhcc
Q psy14007        184 ALTEIEP  190 (198)
Q Consensus       184 ~~~~l~~  190 (198)
                      ++.++.+
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            6555543

>KOG0511|consensus

Probab=98.77  E-value=3.9e-08  Score=71.21  Aligned_cols=72  Identities=28%  Similarity=0.360  Sum_probs=63.3

Q ss_pred             hHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         5 ~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      -|..|++.|+.+.|++|++.|.++|.+|....+||.+|+.-||..++++|+++|+-...-...|.-++.-|.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL  110 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh
Confidence            378999999999999999999999999999999999999999999999999999876655567776655443

>KOG0705|consensus

Probab=98.75  E-value=4.2e-08  Score=74.56  Aligned_cols=85  Identities=32%  Similarity=0.427  Sum_probs=52.5

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcc----ccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCCh
Q psy14007         39 LILAAAAGKLEIVRLLISNGADVN----AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT  114 (198)
Q Consensus        39 L~~A~~~~~~~~~~~L~~~~~~~~----~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~  114 (198)
                      |..|+...++..+-.|+.+|-...    .-+.+|.|+||+||+.|+..+.++|+-+|+++..+|..|+|+|+||.+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            444555555666666666553321    1223556666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhc
Q psy14007        115 PVVKLLLTQ  123 (198)
Q Consensus       115 ~~~~~l~~~  123 (198)
                      +++..|+++
T Consensus       708 ec~d~llq~  716 (749)
T KOG0705|consen  708 ECIDVLLQY  716 (749)
T ss_pred             HHHHHHHHc
Confidence            666666665

>KOG0705|consensus

Probab=98.65  E-value=1.5e-07  Score=71.62  Aligned_cols=89  Identities=30%  Similarity=0.359  Sum_probs=78.1

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCC--CC--CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          6 IHWAALSGREDVVDFLLKNKSP--VD--PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~--~~--~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |.-|+...+...+-.|+.+|..  ++  ..+.+|.|+||.||+.|++.+.+.|+=+|+++-.+|..|.|+|.+|-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            5667777888899999999853  33  2345789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q psy14007         82 EIAELLIHNHANV   94 (198)
Q Consensus        82 ~~~~~l~~~~~~~   94 (198)
                      +++..|+++|...
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999998653

>KOG0521|consensus

Probab=98.56  E-value=8.8e-08  Score=77.30  Aligned_cols=96  Identities=31%  Similarity=0.329  Sum_probs=78.4

Q ss_pred             HhCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCC
Q psy14007         22 LKNKSPVDP--KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV   99 (198)
Q Consensus        22 ~~~~~~~~~--~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   99 (198)
                      ..++...+.  .-..|.|+||.|+..+...+.+.|+++|++++.++..|.+|+|.+...|+......++++|++.+..+.
T Consensus       641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~  720 (785)
T KOG0521|consen  641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP  720 (785)
T ss_pred             hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence            344544443  334678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCChHHH
Q psy14007        100 RGATPLHRAASQGITPVV  117 (198)
Q Consensus       100 ~~~~~l~~a~~~~~~~~~  117 (198)
                      .|.+++.++....+.+..
T Consensus       721 ~~~~~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  721 DGKLPLDIAMEAANADIV  738 (785)
T ss_pred             cCcchhhHHhhhccccHH
Confidence            999999998766554443

>KOG0521|consensus

Probab=98.53  E-value=2.1e-07  Score=75.19  Aligned_cols=84  Identities=38%  Similarity=0.468  Sum_probs=70.3

Q ss_pred             CCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHh
Q psy14007         67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE  146 (198)
Q Consensus        67 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~  146 (198)
                      .|.+++|.|+.++...+.++|+++|++++..+..|.+|+|.+...|+......++++  +.+.+..+..|.+|+++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~--~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR--GADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc--cccccccCccCcchhhHHhhh
Confidence            577888999999888888999999988888888889999999988888888888876  667888888888999888777


Q ss_pred             CChhhH
Q psy14007        147 KRLTDA  152 (198)
Q Consensus       147 ~~~~~~  152 (198)
                      .+.+.+
T Consensus       733 ~~~d~~  738 (785)
T KOG0521|consen  733 ANADIV  738 (785)
T ss_pred             ccccHH
Confidence            555544

>KOG3609|consensus

Probab=98.52  E-value=9.3e-07  Score=70.33  Aligned_cols=114  Identities=25%  Similarity=0.239  Sum_probs=93.9

Q ss_pred             hHHHHHhcCcHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          5 LIHWAALSGREDVVDFLLKNK----SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         5 ~L~~A~~~g~~~~~~~l~~~~----~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      -+-.|+..|+...|+.+++..    .+++..|.-|+++|+.|+.+.+.++.++|+++....       ..+|.+|+..+.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            356799999999999988753    457788999999999999999999999999986544       347899999999


Q ss_pred             HHHHHHHHhcCCCCC----------cCCCCCCcHHHHHHhcCChHHHHHHHhccC
Q psy14007         81 KEIAELLIHNHANVN----------IQDVRGATPLHRAASQGITPVVKLLLTQRL  125 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  125 (198)
                      .+.+++++.+.....          ..-..+.||+..|+..++.++++.|+.++.
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            999999988644431          122357899999999999999999999854

>KOG2384|consensus

Probab=98.49  E-value=6.7e-07  Score=58.95  Aligned_cols=83  Identities=23%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC--CCC
Q psy14007         25 KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD--VRG  101 (198)
Q Consensus        25 ~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--~~~  101 (198)
                      +.++|..|..|+|+++.|+..|+.+.+.||++.| +.+...+..+.+.+.+|-+.|..++++.|.+..-+....+  ..+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~   81 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRD   81 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCC
Confidence            4578999999999999999999999999999999 7888899999999999999999999999987643332222  234


Q ss_pred             CcHHHH
Q psy14007        102 ATPLHR  107 (198)
Q Consensus       102 ~~~l~~  107 (198)
                      .+++++
T Consensus        82 e~lfyC   87 (223)
T KOG2384|consen   82 EALFYC   87 (223)
T ss_pred             Cccchh
Confidence            444444

>KOG0511|consensus

Probab=98.46  E-value=7.1e-07  Score=64.88  Aligned_cols=71  Identities=30%  Similarity=0.328  Sum_probs=64.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q psy14007         38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA  108 (198)
Q Consensus        38 ~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  108 (198)
                      -|..||+.|..+.+++|++.|.++|.+|.....||.+|+..|+..++++|+++|+........|..++.-|
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            57899999999999999999999999999999999999999999999999999998777667777764443

>KOG0520|consensus

Probab=98.45  E-value=4.2e-07  Score=73.65  Aligned_cols=120  Identities=21%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCcHHHHHHhcC
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      |.+.+|.++..+....++.+++. +......+..|.-.+|+ |..+++++.-+++. .|..++.+|..|+||||+|...|
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            56788888888888888888885 65556666677777777 44444566555554 46777888888888888888888


Q ss_pred             hHHHHHHHHhcCCCCCc------CCCCCCcHHHHHHhcCChHHHHHHHh
Q psy14007         80 WKEIAELLIHNHANVNI------QDVRGATPLHRAASQGITPVVKLLLT  122 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~l~~  122 (198)
                      +..++.-|++.|.....      ....|.|+-..+..+|...+..+|-+
T Consensus       653 ~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  653 REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            88888888865554322      22357778788877777766666544

>KOG2384|consensus

Probab=98.40  E-value=2.2e-07  Score=61.15  Aligned_cols=66  Identities=26%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             CCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         92 ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        92 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+++.+|..|+|++++|++.|+.+.+.||+.++ -..+...|..|.+++.+|-+.|..+.++.|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg-~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccC-cccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            456667777777777777777777777777763 145566677777777777777777777777765

>KOG0520|consensus

Probab=98.17  E-value=2.8e-06  Score=69.09  Aligned_cols=122  Identities=21%  Similarity=0.165  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhcChHHHH-HHHHhcCCCCCcCCCCCCcHHHHHHhc
Q psy14007         34 TNRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYACSKGWKEIA-ELLIHNHANVNIQDVRGATPLHRAASQ  111 (198)
Q Consensus        34 ~g~~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~a~~~  111 (198)
                      .|.+.+|.++..+..-.++.+++. +......+..+.-.+|+++.. ..++. ..+.-.|..++.+|..|+||||+|...
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhc-CCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            344555555555555555555543 333333444444444442222 22222 222234445555555555555555555


Q ss_pred             CChHHHHHHHhccC--C--CCcccCCCCCCCHHHHHHHhCChhhHHHHH
Q psy14007        112 GITPVVKLLLTQRL--D--IDVNITDAYGNTPLHYACEEKRLTDAKLLV  156 (198)
Q Consensus       112 ~~~~~~~~l~~~~~--~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  156 (198)
                      |...++.-|+..+.  +  .+++.....|.|+...|-..|+..+.-+|-
T Consensus       652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            55555555443211  1  122222333455555555555544444443

>KOG2505|consensus

Probab=97.90  E-value=4e-05  Score=57.92  Aligned_cols=74  Identities=18%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             ChHHHHHHHhccCCCCcc----cCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHh
Q psy14007        113 ITPVVKLLLTQRLDIDVN----ITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT  186 (198)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~  186 (198)
                      -...+++|.+++...+.+    ..+..-.|+||+|+..|..++|.+||+.|+|+.++|..|.||+.++....-..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~  480 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFI  480 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHH
Confidence            356678888764433222    22334579999999999999999999999999999999999999999776666655

>smart00248 ANK ankyrin repeats

Probab=97.88  E-value=3.2e-05  Score=34.76  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=18.1

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPV   28 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~   28 (198)
                      +|.++||+|+..|+.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3566666666666666666666666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.61  E-value=0.00019  Score=54.49  Aligned_cols=64  Identities=23%  Similarity=0.298  Sum_probs=52.0

Q ss_pred             cHHHHHHHHhCCCCCCCC------CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy14007         14 REDVVDFLLKNKSPVDPK------DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACS   77 (198)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~------~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~   77 (198)
                      -...+++|.+++...|..      +.---|+||+|+.+|.-+|+.+|++.|+++..+|..|.||..++..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            356788888887665432      2235689999999999999999999999999999999999988873

>smart00248 ANK ankyrin repeats

Probab=97.60  E-value=0.00014  Score=32.47  Aligned_cols=27  Identities=48%  Similarity=0.693  Sum_probs=21.4

Q ss_pred             CCCHHHHHHHhCChhhHHHHHHcCCCc
Q psy14007        136 GNTPLHYACEEKRLTDAKLLVRCGARL  162 (198)
Q Consensus       136 g~t~l~~a~~~~~~~~~~~Ll~~g~~~  162 (198)
                      |.||+|.|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            568888888888888888888877755

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.26  E-value=0.0012  Score=43.90  Aligned_cols=138  Identities=16%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChH
Q psy14007         36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP  115 (198)
Q Consensus        36 ~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~  115 (198)
                      ...+..|+.++-+.++++.-+.....   -....+.+..||+..+.++++|+-+.   +..  .+-.+.+.+|....+.+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchh
Confidence            34667788888888887776543211   12445678888888888888888543   222  12244667777777766


Q ss_pred             HH----HHHHhccCCCCcccCC--CCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        116 VV----KLLLTQRLDIDVNITD--AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       116 ~~----~~l~~~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      +.    ..++++....  ...|  .--..-|..|+..|-...+.-.+++|-+++.      +.+..|+.+.+..++..++
T Consensus       119 LyslGY~l~~~~~~~~--~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE--HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccc--cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            52    2233321111  0111  1112346778888888887777788776543      6777788887777776654

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.08  E-value=0.014  Score=39.00  Aligned_cols=136  Identities=18%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHH-
Q psy14007          6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIA-   84 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~-   84 (198)
                      |.-|++.+-..++++.-+...+-   -...++.+..||+..+.++|+|+-+.-.-.     .-.+.+..|....+.++. 
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCCC-----CchhhhhhhhhccchhHHH
Confidence            56688888888888887765421   234567889999999999999995432211     223567788888777664 


Q ss_pred             ---HHHHhcCCCCCcCCC--CCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007         85 ---ELLIHNHANVNIQDV--RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus        85 ---~~l~~~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                         .++.++...-...+.  .-..-+..|+..|....+.-.+++|.  +.+      .++|..|++..+..++.+++.
T Consensus       122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg--~~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGG--NVD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCC--ccc------HHHHHHHHHhhHHHHHHHhhc
Confidence               334444322211111  11235677899999888887787743  222      288999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.63  E-value=0.033  Score=38.53  Aligned_cols=116  Identities=22%  Similarity=0.261  Sum_probs=76.2

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCC----CCCcHHHHHH--h
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV----RGATPLHRAA--S  110 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~l~~a~--~  110 (198)
                      -.|.-|+...+++-+.-++...-       .-.+++.+++..+..+++.+|+.+- .....|.    .+.--+.++.  .
T Consensus       155 isledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhc
Confidence            44666777777777766665321       2346788888888889998888641 1111221    1111233333  3


Q ss_pred             cCChHHHHHHHhccCCCCccc---CCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007        111 QGITPVVKLLLTQRLDIDVNI---TDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      ..+..++++++++|. .+++.   .-..|.|.|.-|+++++.+++.+|+++||-
T Consensus       227 ~a~~kvL~~Fi~~Gl-v~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  227 SASYKVLEYFINRGL-VDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CCcHHHHHHHHhccc-cccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            445678899998753 23332   235699999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.33  E-value=0.0079  Score=34.40  Aligned_cols=47  Identities=30%  Similarity=0.474  Sum_probs=27.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhc
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN   90 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~   90 (198)
                      ..+..|+.+|+.|+++.+++.+ .++      ...+..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3556666666666666666543 111      2346666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.18  E-value=0.038  Score=38.22  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=13.2

Q ss_pred             CCCcHHHHHHhcChHHHHHHHHhcCC
Q psy14007         67 GGHSALQYACSKGWKEIAELLIHNHA   92 (198)
Q Consensus        67 ~~~t~l~~a~~~~~~~~~~~l~~~~~   92 (198)
                      .|.|.|.-|.++++.+++.+|+++|+
T Consensus       253 SGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  253 SGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            44455555555555555555555444

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.03  E-value=0.019  Score=32.82  Aligned_cols=45  Identities=27%  Similarity=0.397  Sum_probs=22.9

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy14007          6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN   57 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~   57 (198)
                      +..|+..|+.++++.+++.+. ++      ..++..|+...+.++++||++.
T Consensus        10 l~~Ai~GGN~eII~~c~~~~~-~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKNK-PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHhc-cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            455555555555555554431 11      2345555555555555555553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
1uoh_A	226	Human Gankyrin Length = 226		8e-36
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-36
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-35
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-35
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-27
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-26
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-23
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-23
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-22
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-22
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-22
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-22
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-21
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-21
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-21
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-21
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-21
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-20
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-18
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-20
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-20
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-19
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-20
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-20
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-20
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-20
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-19
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-19
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-19
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-19
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-19
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-19
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-17
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-17
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-17
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-17
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-17
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-16
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-16
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		8e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-11
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		9e-15
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-14
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-11
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-13
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-13
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-12
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-12
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-12
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		6e-12
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		6e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		9e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-11
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		8e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-10
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-10
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-10
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-10
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-10
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-09
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-09
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		9e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-07
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		3e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		7e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		8e-07
3deo_A	183	Structural Basis For Specific Substrate Recognition		2e-06
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		4e-06
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		5e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		6e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		6e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		7e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-05
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		3e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		4e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		4e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		4e-04

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   ++ +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct: 159 LYYK--ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct: 40  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   ++ +L
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AKLLV  GA + I+NKE+KTPL +
Sbjct: 160 LYYK--ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG+ EIV+ L+  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   +V +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AK LV  GA + I+NKE+KTPL +
Sbjct: 159 LFYK--ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           + R  +HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG  EIV+ L+  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VNA    G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   +V +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  +     NI D  GNTPLH AC+E+R+ +AK LV  GA + I+NKE+KTPL +
Sbjct: 159 LFYK--ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G +D V  L++N + V+  D   RTPL  AA  G  EIV+LLIS GADVNAK   G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L YA  +G KEI +LLI   A+VN +D  G TPLH AA +G   +VKLL+++    D
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
           VN +D+ G TPL  A E       KLL + G  L+
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G +D V  L++N + V+  D   RTPL  AA  G  E+V+LLIS GADVNAK   G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L +A   G KE+ +LLI   A+VN +D  G TPLH AA  G   VVKLL+++    D
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
           VN +D+ G TPL  A E       KLL + G  L+
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G +D V  LL+N + V+  D   +TPL LAA  G  E+V+LL+S GAD NAK   G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L  A   G KE+ +LL+   A+ N +D  G TPLH AA  G   VVKLLL+Q    D
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
            N +D+ G TPL  A E       KLL + G  L+
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G +D V  LL+N +  +  D   RTPL  AA  G  EIV+LL+S GAD NAK   G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L YA   G KEI +LL+   A+ N +D  G TPLH AA  G   +VKLLL++    D
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
            N +D+ G TPL  A E       KLL + G  L+
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNAK   G++ L  A  +G  EI E+L+   A+VN +D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA +G   +V++LL  +   DVN  D  G TPLH A  E  L   ++L++ 
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KTP DL
Sbjct: 124 GADVNAQDKFGKTPFDL 140

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNAK   G++ L  A  +G  EI E+L+   A+VN +D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA +G   +V++LL  +   DVN  D  G TPLH A  E  L   ++L++ 
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KTP DL
Sbjct: 124 GADVNAQDKFGKTPFDL 140

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA+ D G + L  A  KG  EI E+L+ + A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA  G   +V++LL      DVN TD YG TPLH A +   L   ++L++ 
Sbjct: 78  KMGDTPLHLAALYGHLEIVEVLLKNG--ADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA  D G + L  A   G  EI E+L+ + A+VN +D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA  G   +V++LL  +   DVN  DAYG TPLH A +   L   ++L++ 
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLL--KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA  + G++ L  A S G  EI E+L+ N A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
           + G TPLH AA+ G   +V++LL      DVN  D  G+TPLH A +   L   ++L++ 
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHG--ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+ +D T  TPL LAA  G LEIV +L+ NGADVNAK   G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L  A  +G  EI E+L+ N A+VN  D  G TPLH AA +G   +V++LL      D
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN--GAD 138
Query: 129 VNITDAYGNTPL 140
           VN  D +G T  
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA+   G + L  A   G  EI E+L+ N A+VN +D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA +G   +V++LL      DVN +D++G TPLH A +   L   ++L++ 
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKN--GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNAK   G++ L  A  +G  EI E+L+   A+VN +D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA +G   +V++LL  +   DVN  D  G TPLH A  E  L   ++L++ 
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA+   G + L  A   G  EI E+L+ N A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G+TPLH AA +G   +V++LL  +   DVN  D  G+TPLH A +   L   ++L++ 
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLL--KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 36  RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
           RTPL LAA  G LE+V+LL+  GADVNAK   G + L  A   G  E+ +LL+   A+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96  IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
            +D  G TPLH AA  G   VVKLLL      DVN  D  G TPLH A     L   KLL
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 156 VRCGA 160
           +  GA
Sbjct: 121 LEAGA 125

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+LI+NGADVNA  + G + L  A   G  EI E+L+ + A+V+  D
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
           V G TPLH AA  G   +V++LL  +   DVN  D  G+TPLH A +E  L   ++L++ 
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLL--KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +GR+D V  L+ N + V+ +D +  TPL LAA  G LEIV +L+ NGADVNA    G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L+ A   G  EI E+L+ N A+VN  D+ G TPLH AA  G   +V++LL      D
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GAD 138
Query: 129 VNITDAYGNTPL 140
           VN  D +G T  
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA+   G + L  A   G  EI E+L+ N A+VN  D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPL  AA  G   +V++LL      DVN  D  G+TPLH A     L   ++L++ 
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+  DD   TPL LAAA G+LEIV +L+ NGADVNA    G
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L  A   G  EI E+L+ + A+VN  D  G TPLH AA  G   +V++LL      D
Sbjct: 73  ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG--AD 130
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLL 155
           VN  DA G T    +  + +   A++L
Sbjct: 131 VNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A + G  +   +L+ N A+VN  D  G TPLH AA+ G   +V++LL      DVN +D+
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG--ADVNASDS 70
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLP 179
            G TPLH A  +  L   ++L++ GA ++  ++   TPL L  L 
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS 115

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+  D+T  TPL LAA +G LEIV +L+ +GADV+A    G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
           ++ L  A   G  EI E+L+ N A+VN  D  G TPLH AA  G   +V++LL      D
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
           VN  D +G T  
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA  + G + L  A   G  EI E+L+ + A+V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
           V G TPLH AA  G   +V++LL      DVN  D+ G TPLH A +   L   ++L++ 
Sbjct: 78  VFGYTPLHLAAYWGHLEIVEVLLKNG--ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +GR+D V  L+ N + V+  D    TPL LAA  G LEIV +L+ NGADVNA    G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L  A   G  EI E+L+ N A+VN +D  G TPLH AA++G   +V++LL  +   D
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
           VN  D +G T  
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    G + L  A   G  EI E+L+ N A+VN  D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G+TPLH AA  G   +V++LL      DVN  D  G TPLH A     L   ++L++ 
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLLKN--GADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    GH+ L  A   G  EI E+L+   A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             GATPLH AA  G   +V++LL      DVN  D  G TPLH A  +  L   ++L++ 
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHG--ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    G + L  A + G  EI E+L+ + A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
           + G+TPLH AA  G   +V++LL      DVN  D +G+TPLH A     L   ++L++ 
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHG--ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    G + L  A + G  EI E+L+ + A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
           + G+TPLH AA  G   +V++LL      DVN  D +G+TPLH A     L   ++L++ 
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHG--ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N +  +  D   RTPL +AAA G LEIV +L+ NGADVNA    G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L  A S G  EI E+L+   A+VN +D  G TPL+ AA  G   +V++LL      D
Sbjct: 69  TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH--GAD 126
Query: 129 VNITDAYGNTPL 140
           VN  D +G T  
Sbjct: 127 VNAQDKFGKTAF 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGAD NA    G + L  A + G  EI E+L+ N A+VN  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AAS G   +V++LL  +   DVN  DA G TPL+ A     L   ++L++ 
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLL--KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 124 GADVNAQDKFGKTAFDI 140

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+  D    TPL LAA  G LEIV +L+ NGADVNA    G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
            + L  A  +G  E+ E+L+ N A+VN  D  G TPLH AA+ G   +V++LL      D
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
           VN  D +G T  
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    G + L  A   G  EI E+L+ N A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA +G   VV++LL      DVN  D  G TPLH A     L   ++L++ 
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNG--ADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    G + L    + G  EI E+L+   A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G TPLH AA +G   +V++LL  +   DVN  D  G TPLH A E+  L   ++L++ 
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLL--KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
           GA ++ Q+K  KT  D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADVNAKADG 67
           AA +   + V +L+K  + VDPKD    T L LAA  G  E+V+ L+SNG  DVN + DG
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
           G + + +A      ++ +LL+   +++NI+D      LH AA  G   + ++LL  + D+
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 128 D-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL 178
             VNI   +G++PLH A  E R     L +   + + ++NKE +TPL    L
Sbjct: 171 HAVNI---HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
           H N  ++     +PLH AA  G   +  +L+    +ID    D    TPL  A E   L 
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLE 58
Query: 151 DAKLLVRCGARLDIQNKEKKTPLDL 175
             K L++ GA +D ++ E  T L L
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHL 83

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 5   LIHWAALSGREDVVDFLLKNKSPVDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           L+HWAA++ R D+V + +   + VD    D N TPL  A   G L +V  L+  GAD + 
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA--SQGITPVVKLLL 121
               G S +  A   G   I   LI    +V++ D  G TPL  AA  +  + P  +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP-TRLLL 163
Query: 122 TQRLDIDVNITDAY-GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           T   ++ VN+ D Y  NT LH+A      T   LL+  GA +D QN + ++ LDL
Sbjct: 164 T--FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 3   RLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN-- 57
           R+ +HW+      ++  FLL     V   D  DD+  TP  +A + G LE+V+ L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
             D+N   + G + L  A  K W E+++ LI N A+V I+D     PLHRAAS G   ++
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDI 164
           +LL        VN  D  G TPL +A  E     A LLV + GA  D+
Sbjct: 157 ELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 3   RLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN-- 57
           R+ +HW+      ++  FLL     V   D  DD+  TP  +A + G LE+V+ L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
             D+N   + G + L  A  K W E+++ LI N A+V I+D     PLHRAAS G   ++
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDI 164
           +LL        VN  D  G TPL +A  E     A LLV + GA  D+
Sbjct: 157 ELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 3   RLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN-- 57
           R+ +HW+      ++  FLL     V   D  DD+  TP  +A + G LE+V+ L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
             D+N   + G + L  A  K W E+++ LI N A+V I+D     PLHRAAS G   ++
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDI 164
           +LL        VN  D  G TPL +A  E     A LLV + GA  D+
Sbjct: 157 ELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA +G  +V  +LL+NK+ V+ K   ++TPL  AA  G   +V+LL+ N A+ N   
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             GH+ L  A  +G  E    L+   A+      +G TPLH AA  G   V +LLL +  
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-- 168
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           D   N     G TPLH A     L   KLL+  G           TPL +
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 46  GKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP 104
           G    VRL + N   D+N   D G S L +AC +G   + E+LI   A +N+ +    TP
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
           LH AAS G   +V+ LL  + DI  N  + +GN PLHYAC   +   A+ LV  GA + I
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 165 QNKEKKTPLDLLPLP 179
            NK  + P+D    P
Sbjct: 129 CNKYGEMPVDKAKAP 143

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 46  GKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP 104
           G    VRL + N   D+N   D G S L +AC +G   + E+LI   A +N+ +    TP
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
           LH AAS G   +V+ LL  + DI  N  + +GN PLHYAC   +   A+ LV  GA + I
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 165 QNKEKKTPLDLLPLP 179
            NK  + P+D    P
Sbjct: 134 CNKYGEMPVDKAKAP 148

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           AA +G  + V  L   +S V+ +D   R  TPL  AA   ++ +V  L+ +GADV+AK  
Sbjct: 15  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
           GG   L  ACS G  E+AELL+ + A VN+ D+   TPLH AA++G   + KLLL    D
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 127 IDVNITDAYGNTPL 140
                 D  GNTPL
Sbjct: 134 PTKKNRD--GNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 39  LILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           L+ AA AG +E V+ L +    N  D+  +     + L +A       + E L+ + A+V
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
           + +D  G  PLH A S G   V +LL+       VN+ D +  TPLH A  + +    KL
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 155 LVRCGARLDIQNKEKKTPLDLL 176
           L++ GA    +N++  TPLDL+
Sbjct: 127 LLQHGADPTKKNRDGNTPLDLV 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           AA +G  + V  L   +S V+ +D   R  TPL  AA   ++ +V  L+ +GADV+AK  
Sbjct: 17  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
           GG   L  ACS G  E+AELL+ + A VN+ D+   TPLH AA++G   + KLLL    D
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Query: 127 IDVNITDAYGNTPL 140
                 D  GNTPL
Sbjct: 136 PTKKNRD--GNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 39  LILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           L+ AA AG +E V+ L +    N  D+  +     + L +A       + E L+ + A+V
Sbjct: 14  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 70
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
           + +D  G  PLH A S G   V +LL+       VN+ D +  TPLH A  + +    KL
Sbjct: 71  HAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 155 LVRCGARLDIQNKEKKTPLDLL 176
           L++ GA    +N++  TPLDL+
Sbjct: 129 LLQHGADPTKKNRDGNTPLDLV 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           AA +G  + V  L   +S V+ +D   R  TPL  AA   ++ +V  L+ +GADV+AK  
Sbjct: 19  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
           GG   L  ACS G  E+AELL+ + A VN+ D+   TPLH AA++G   + KLLL    D
Sbjct: 78  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Query: 127 IDVNITDAYGNTPL 140
                 D  GNTPL
Sbjct: 138 PTKKNRD--GNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 39  LILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           L+ AA AG +E V+ L +    N  D+  +     + L +A       + E L+ + A+V
Sbjct: 16  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 72
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
           + +D  G  PLH A S G   V +LL+       VN+ D +  TPLH A  + +    KL
Sbjct: 73  HAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 155 LVRCGARLDIQNKEKKTPLDLL 176
           L++ GA    +N++  TPLDL+
Sbjct: 131 LLQHGADPTKKNRDGNTPLDLV 152

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 59/212 (27%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD---VN 62
           +H A   G  +V + LLK+ + V+  D    TPL  AA+  ++E+  LL+S+GAD   VN
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 63  AKADG-------------------GHSALQYA---------------------------- 75
                                   GHS LQ A                            
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214
Query: 76  --CSKGW-----KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
             C+        K++AELL+   ANVN ++    TPLH AA +    V+++L   +    
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL--HKHGAK 272
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           +N  D+ G T LH A     L   +LL+  G+
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 33  DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE--IAELLIHN 90
           +  +  L+ AA +G  E +  L++   +VN  A  G  +     + G+    I +LL+ +
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
            A+V+ +D  G  PLH A S G   V +LLL       VN  D +  TPLH A  + R+ 
Sbjct: 81  GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVE 138
Query: 151 DAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT 186
              LL+  GA   + N   K+ +D+ P P L + LT
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 54/86 (62%)
Query: 36  RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
           RTPL LAA  G LE+V+LL+  GADVNAK   G + L  A   G  E+ +LL+   A+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96  IQDVRGATPLHRAASQGITPVVKLLL 121
            +D  G TPLH AA  G   VVKLLL
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
           G + L  A   G  E+ +LL+   A+VN +D  G TPLH AA  G   VVKLLL      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GA 59
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           DVN  D  G TPLH A     L   KLL+  GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 18/203 (8%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H A    RED+V+ LL++ +    +     TP ILAA AG +++++L +S GADVN   
Sbjct: 63  LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECD 122
Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNI--------QDVR--GATPLHRAASQGITP 115
             G +A   A   G  +  + L    ANVN+        + +R  GAT L  AA +G   
Sbjct: 123 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK----LLVRCGARLDIQNKEKKT 171
           V+K+LL + +  DVN  D  G   L +A      +D +    LL+  GA ++++ +  KT
Sbjct: 183 VLKILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 241
Query: 172 PLDL-LPLPHLA--QALTEIEPI 191
           PL L +   HL   Q L E E I
Sbjct: 242 PLILAVEKKHLGLVQRLLEQEHI 264

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 18/203 (8%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H A    RED+V+ LL++ +    +     TP +LAA AG +++++L +S GADVN   
Sbjct: 43  LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102
Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNI--------QDVR--GATPLHRAASQGITP 115
             G +A   A   G  +  + L    ANVN+        + +R  GAT L  AA +G   
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK----LLVRCGARLDIQNKEKKT 171
           V+K+LL + +  DVN  D  G   L +A      +D +    LL+  GA ++++ +  KT
Sbjct: 163 VLKILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 172 PLDL-LPLPHLA--QALTEIEPI 191
           PL L +   HL   Q L E E I
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHI 244

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+ KD+   TPL LA A G LEIV +L+ NGADVNA    G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            + L  A   G  EIAE+L+ + A+VN QD  G T    +   G   + ++L  Q+L+
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL--QKLN 136

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN +D  G TPL+ A + G   +V++LL      DVN  DA
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDA 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            G TPLH A     L  A++L++ GA ++ Q+K  KT  D+
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ A  AG+ + VR+L++NGADVNA  D G + L  A  +G  EI E+L+ + A+VN +D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
           + G TPLH AA+ G   +V++LL      DVN  D +G T    + +
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISID 122

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN  D  G TPLH AA +G   +V++LL      DVN  D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNARDI 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +G TPLH A     L   ++L+  GA ++ Q+K  KT  D+
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ A  AG+ + VR+L++NGADVNA  D G + L  A  +G  EI E+L+ + A+VN  D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
           + G TPLH AA+ G   +V++LL      DVN  D +G T    + +
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISID 122

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN  D  G TPLH AA +G   +V++LL      DVN +D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNASDI 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +G TPLH A     L   ++L+  GA ++ Q+K  KT  D+
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AAL GR D++  LLK+ +    ++     PL LA   G  ++V+ L+ + A  N K 
Sbjct: 90  LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G++ L YACS G  E+  LL+ + A++N  + +G T LH A  +    VV+LLL    
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 126 DIDV 129
            + V
Sbjct: 210 SVQV 213

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
           +PL +AA  G+ +++ LL+ +GA+  A+       L  AC +G  ++ + L+ ++A  N 
Sbjct: 88  SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK 147
Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
           +D+ G TPL  A S G   +V LLL     I  N ++  GNT LH A  EK +   +LL+
Sbjct: 148 KDLSGNTPLIYACSGGHHELVALLLQHGASI--NASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 157 RCGARLDIQNKEKKTPLD 174
             GA + + NK ++T +D
Sbjct: 206 LHGASVQVLNKRQRTAVD 223

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ A  AG+ + VR+L++NGADVNA  D G + L  A  +G  EI E+L+ + A+VN  D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
             G TPLH AA+ G   +V++LL      DVN  D +G T    + +
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISID 122

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN  D  G TPLH AA +G   +V++LL      DVN +D+
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNASDS 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +G TPLH A     L   ++L+  GA ++ Q+K  KT  D+
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%)
Query: 4   LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           L +H  A  G    +   ++ ++ ++  D+   TPL+ AAA G++ +V  L+ NGAD   
Sbjct: 21  LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 80
Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
              G  SAL  ACSKG+ +I ++L+    +VN  D  G TPL  A        VK+LL  
Sbjct: 81  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
Query: 124 RLDIDVNITDAYGNTPL 140
             D  +     Y +  L
Sbjct: 141 GADPTIETDSGYNSMDL 157

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 68/140 (48%)
Query: 4   LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           L +H  A  G    +   ++ ++ ++  D+   TPL+ AAA G++ +V  L+ NGAD   
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
              G  SAL  ACSKG+ +I ++L+    +VN  D  G TPL  A        VK+LL  
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 124 RLDIDVNITDAYGNTPLHYA 143
             D  +     Y +  L  A
Sbjct: 125 GADPTIETDSGYNSMDLAVA 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 68/140 (48%)
Query: 4   LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           L +H  A  G    +   ++ ++ ++  D+   TPL+ AAA G++ +V  L+ NGAD   
Sbjct: 3   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 62
Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
              G  SAL  ACSKG+ +I ++L+    +VN  D  G TPL  A        VK+LL  
Sbjct: 63  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 124 RLDIDVNITDAYGNTPLHYA 143
             D  +     Y +  L  A
Sbjct: 123 GADPTIETDSGYNSMDLAVA 142

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+  D+   TPL LAA  G LEIV +L+  GADVNA+ + G
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
            + L  A  +G  EI E+L+ + A+VN QD  G T    +   G   + ++L
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN  D  G TPLH AA  G   +V++LL  +   DVN  D 
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL--KYGADVNAEDN 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +G TPLH A     L   ++L++ GA ++ Q+K  KT  D+
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           A + G E+ +D L++N   ++ KD    T LI A    +L I   L+S G++VN K   G
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
            + L ++   G+ E++  L+ + ANVN +++ G TPL  A+  G + +VK LL    DI
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H A +    D+V FL++N + ++  D+    PL  AA+ G L+I   LIS GA V A  
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136
Query: 66  DGGHSALQYA-------------------CSKGWKEIAELLIHNHANV----NIQDVR-- 100
             G + L  A                        KE   +++ +        +I DVR  
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 101 --GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             G T LH AA++G T V+KLL+  R   DVNI D  G TPLH A    +    ++LV  
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 159 GARLDIQNKEKKTPLDL 175
              ++  NK  +T  D+
Sbjct: 255 LCDMEAVNKVGQTAFDV 271

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 61/112 (54%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L  N + V+  D    TPL LAA  G LEIV +L+ NGADVNA  + G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
            + L  A      EI E+L+ + A+VN QD  G T    +   G   + ++L
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L  N A+VN  D  G TPLH AA  G   +V++LL      DVN T  
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN--GADVNATGN 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            G TPLH A     L   ++L++ GA ++ Q+K  KT  D+
Sbjct: 79  TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADVNA    G++ L  A      EI E+L+ + A+VN  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
             G+TPLH AA  G   +V++LL      DVN  D +G T  
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHG--ADVNAQDKFGKTAF 117

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN  D +G TPLH AA      +V++LL      DVN  D 
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG--ADVNAHDN 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            G+TPLH A     L   ++L++ GA ++ Q+K  KT  D+
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 1   NERLLIHWAALSGREDVV-DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
            + L IH  A  G  D + + L K  + V+  D+   TPLI A+A G++E VR L+  GA
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
           D +  A    SAL  A + G+ +I  LL+    ++NI D  G TPL  A        V+ 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 120 LLTQRLDIDVNITDAYGNTPLHYAC 144
           LL +  D+       Y  TP+  A 
Sbjct: 121 LLARGADLTTEADSGY--TPMDLAV 143

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 1   NERLLIHWAALSGREDVV-DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
            + L IH  A  G  D + + L K  + V+  D+   TPLI A+A G++E VR L+  GA
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
           D +  A    SAL  A + G+ +I  LL+    ++NI D  G TPL  A        V+ 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 120 LLTQRLDIDVNITDAYGNTPLHYAC 144
           LL +  D+       Y  TP+  A 
Sbjct: 121 LLARGADLTTEADSGY--TPMDLAV 143

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 61/112 (54%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V+ +D    TPL LAA    LEIV +L+ NGADVNA    G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
            + L      G  EI E+L+ + A+VN QD  G T    +   G   + ++L
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN +D  G TPLH AA      +V++LL      DVN  DA
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG--ADVNAIDA 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            G TPLH       L   ++L++ GA ++ Q+K  KT  D+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA+ G +  +  L+     V+     + +PL  A   G L  V++L+ +GA VN   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
              H+ L  AC  G  +   LL+ + A+V  +    A+P+H AA +G    V  L+    
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGG 125
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           +ID  I+  +  TPL+ ACE ++    K L+  GA ++ Q K + +PL
Sbjct: 126 NIDHKIS--HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 170

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA+ G +  +  L+     V+     + +PL  A   G L  V++L+ +GA VN   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
              H+ L  AC  G  +   LL+ + A+V  +    A+P+H AA +G    V  L+    
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGG 181
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           +ID  I+  +  TPL+ ACE ++    K L+  GA ++ Q K + +PL
Sbjct: 182 NIDHKIS--HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 226

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           + DF+ +  S  +  D T  T L LAAA  + +  + L+   AD N + + G + L  A 
Sbjct: 39  ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 77  SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           S   + + ++LI N A +++ +   G TPL  AA   +  +++ L+      DVN  D  
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 156
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           G + LH+A     +  A +L++ GA  D+QN  ++TPL L
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGA       G  S L  A   G     E+L+    + + + 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
               TPLH AAS+G   +V++LL  +   DVN  D    T LH+A E       +LL++ 
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLL--KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 159 GARLDIQNKEKKTPLDL 175
           GA +  Q+K  KT  D+
Sbjct: 123 GADVHTQSKFCKTAFDI 139

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           + DF+ +  S  +  D T  T L LAA   + +  + L+   AD N + + G + L  A 
Sbjct: 40  ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 77  SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           S   + + ++LI N A +++ +   G TPL  AA   +  +++ L+      DVN  D  
Sbjct: 100 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 157
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           G + LH+A     +  A +L++ GA  D+QN  ++TPL L
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           + DF+ +  S  +  D T  T L LAA   + +  + L+   AD N + + G + L  A 
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 77  SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           S   + + ++LI N A +++ +   G TPL  AA   +  +++ L+      DVN  D  
Sbjct: 67  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 124
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           G + LH+A     +  A +L++ GA  D+QN  ++TPL L
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           + DF+ +  S  +  D T  T L LAA   + +  + L+   AD N + + G + L  A 
Sbjct: 39  ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 77  SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           S   + + ++LI N A +++ +   G TPL  AA   +  +++ L+      DVN  D  
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 156
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           G + LH+A     +  A +L++ GA  D+QN  ++TPL L
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 52/93 (55%)
Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
           TPL  AA  G  E V+ L+S GADVNA++  G++ L  A   G  EI +LL+   A+VN 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
           +   G TP H A   G   +VKLL  +  D++ 
Sbjct: 71  RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           G TPLH AA  G    VK LL++  D++    D  GNTPLH A +       KLL+  GA
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 161 RLDIQNKEKKTPLDL 175
            ++ ++K+  TP  L
Sbjct: 67  DVNARSKDGNTPEHL 81

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 9  AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
          AA +G++D V  L+ N + V  KD    TPL LAA  G LE+V+LL+  GADVNA+   G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 69 HSALQYACSKGWKEIAELL 87
           +A   +   G +++AE+L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 38  PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
            L+ AA AG+ + VR+L++NGADV AK   G + L  A   G  E+ +LL+   A+VN Q
Sbjct: 9   KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 98  DVRGATPLHRAASQGITPVVKLL 120
           D  G T    +   G   + ++L
Sbjct: 69  DKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+V  +D  G+TPLH AA  G   VVKLLL      DVN  D 
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--EAGADVNAQDK 70
Query: 135 YGNTPLHYACE 145
           +G T    + +
Sbjct: 71  FGKTAFDISID 81

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 28  VDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAEL 86
           +DP  +    T L +A+  G +  V  L+ NG+D N K   G + L  AC+ G  ++ EL
Sbjct: 2   IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 87  LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
           L+ + A VN    +  +PLH AA  G   +VKLLL+       N  + +G  P+ Y  +E
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS--YGASRNAVNIFGLRPVDYTDDE 119
Query: 147 K 147
Sbjct: 120 S 120

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
           G + L  A  KG     E L+ N ++ N++D  G TPLH A + G   VV+LLL  +   
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK--A 67
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
            VN T    ++PLH A +   +   KLL+  GA  +  N     P+D
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 9  AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
          AA +G++D V  L+ N + V+ KD    TPL LAA  G LEIV +L+  GADVNA+   G
Sbjct: 9  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 69 HSALQYACSKGWKEIAELL 87
           +A   +   G +++AE+L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 38  PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
            L+ AA AG+ + VR+L++NGADVNAK   G++ L  A  +G  EI E+L+   A+VN Q
Sbjct: 5   KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 98  DVRGATPLHRAASQGITPVVKLL 120
           D  G T    +   G   + ++L
Sbjct: 65  DKFGKTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A   G  +   +L+ N A+VN +D  G TPLH AA +G   +V++LL  +   DVN  D 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAQDK 66
Query: 135 YGNTPLHYACE 145
           +G T    + +
Sbjct: 67  FGKTAFDISID 77

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           + DF+ +  S  +  D T  T L LAA   + +  + L+   AD   + + G + L  A 
Sbjct: 4   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 77  SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           S   + + ++L+ N A +++ +   G TPL  AA   +  +++ L+      DVN  D  
Sbjct: 64  SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSH--ADVNAVDDL 121
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           G + LH+A     +  A +L++ GA  D+QN +++TPL L
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
           AA +G++D V  L+ N + V  KD    TPL LAA  G LE+V+LL+  GADV A+   G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 69  HSALQYACSKGWKEIAELL 87
            +A   +   G +++AE+L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ AA AG+ + VR+L++NGADV AK   G + L  A   G  E+ +LL+   A+V  QD
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 99  VRGATPLHRAASQGITPVVKLL 120
             G T    +   G   + ++L
Sbjct: 88  KFGKTAFDISIDNGNEDLAEIL 109

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 21  LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKG 79
           LL   +  + +D+T RTPL  A AA  + + ++L+ N A ++NA+   G + L  A    
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 80  WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP 139
            + + E LI   A++N  D  G T LH AA+   T  V +LL    + D    D    TP
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ--DDKDETP 187
Query: 140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L  A  E     +K L+   A  +I +   + P D+
Sbjct: 188 LFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 223

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           +H A  +  ++ V  LL+  + +D  D  + R+PLI A     L +V+LL+ +GA+VNA+
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
              G SAL  A  +G   +   L+ + A+ ++++    TPL  A S+ +  +++
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 6   IHWAALSGR----EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
           +H A + G       +V+   +    +D  ++  +TPL LA       +VRLL++ GA  
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHA----NVNIQDVRGATPLHRAASQGITPVV 117
            A    G +A   AC          L+ + A    ++  ++  G T LH A +      V
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 118 KLLLTQRLDID-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL--- 173
           +LLL +  DID V+I    G +PL +A E   L+  +LL++ GA ++ Q     + L   
Sbjct: 133 QLLLERGADIDAVDIKS--GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 174 ---DLLPL 178
               LLPL
Sbjct: 191 SGRGLLPL 198

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
           V + L      VD  D    TPL +A     +EI + LI  GAD+N +     S   YA 
Sbjct: 21  VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 77  SKGWKEI-AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ-RLDIDVNITDA 134
           ++G  EI A +L H   ++N  +  G   L  AA +G    VKLLL   R DID    + 
Sbjct: 81  AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQND 138
Query: 135 YGNTPLHYAC---EEKRLTD--AKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE 189
           +G T L  A    E  +L     KLL+  GA   I++   +T +D        +  TEI 
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN----QKGYTEIS 194
Query: 190 PIV 192
            I+
Sbjct: 195 KIL 197

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 6   IHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAG-----KLEIVRLLISNGA 59
           +H++       VV  LL +    VD ++    +P++L A A       +E V  L   G 
Sbjct: 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG- 173
Query: 60  DVNAKAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
           ++NAKA   G +AL  A S G  ++ + L+   A+VN+QD  G+T L  A   G   +  
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
           LLL      D+++TD  G+T L  A +  +   A +L    +R++I+
Sbjct: 234 LLLAVP-SCDISLTDRDGSTALMVALDAGQSEIASMLY---SRMNIK 276

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI-- 88
           +++  +TPL LA    + EI   L+  G D   +   G++ L  AC +G      +L   
Sbjct: 38  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 89  ----HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYA 143
               H H+ +   +  G T LH A+  G   +V+LL++  L  DVN  +   G T LH A
Sbjct: 98  CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--LGADVNAQEPCNGRTALHLA 155
Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            + +      LL++CGA ++    +  +P  L
Sbjct: 156 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI-- 88
           +++  +TPL LA    + EI   L+  G D   +   G++ L  AC +G      +L   
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 89  ----HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYA 143
               H H+ +   +  G T LH A+  G   +V+LL++  L  DVN  +   G T LH A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--LGADVNAQEPCNGRTALHLA 158
Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            + +      LL++CGA ++    +  +P  L
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
            + A   G L+ V+  ++ G DVN   +GG   L YA   G  EI E L+   A++N  D
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
               TPL  A  +G    VKLLL++  D  V   D 
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
            + A   G L+ V+  ++ G DVN   +GG   L YA   G  EI E L+   A++N  D
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
               TPL  A  +G    VKLLL++  D  V   D 
Sbjct: 66  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 42  AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
           AAA G + E+ RLL       +A    G +ALQ     G   IA  L+   A+ N+QD  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           G +P+H AA  G    +K+L+      DVN+ D  G  P+H A +E        L    A
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA---A 122
Query: 161 RLDIQNKEKK--TPLDLLPLPHLAQALTEI 188
             D+  ++ +  TPL+ L L   AQ L +I
Sbjct: 123 ESDLHRRDARGLTPLE-LALQRGAQDLVDI 151

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G LE +  L+ N  +VNA+   G +ALQ     G  EIA  L+   AN +++D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
             G   +H AA  G    ++ LL      DVNI D  GN PLH A +E  L   + LV+ 
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
             + +  +N +  T  DL  L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G LE +  L+ N  +VNA+   G +ALQ     G  EIA  L+   AN +++D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
             G   +H AA  G    ++ LL      DVNI D  GN PLH A +E  L   + LV+ 
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
             + +  +N +  T  DL  L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 42  AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
           AAA G + E+ RLL       +A    G +ALQ     G   IA  L+   A+ N+QD  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 73
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           G +P+H AA  G    +K+L+      DVN+ D  G  P+H A +E        L    A
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA---A 128
Query: 161 RLDIQNKEKK--TPLDLLPLPHLAQALTEI 188
             D+  ++ +  TPL+ L L   AQ L +I
Sbjct: 129 ESDLHRRDARGLTPLE-LALQRGAQDLVDI 157

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G LE +  L+ N  +VNA+   G +ALQ     G  EIA  L+   AN +++D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
             G   +H AA  G    ++ LL      DVNI D  GN PLH A +E  L   + LV+ 
Sbjct: 68  RTGNAVIHDAARAGFLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
             + +  +N +  T  DL  L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G LE +  L+ N  +VNA+   G +ALQ     G  EIA  L+   AN +++D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
             G   +H AA  G    ++ LL  +   DVNI D  GN PLH A +E  L   + LV+ 
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLENQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
             + +  +N +  T  DL  L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 22  LKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
           L+N+ + +D +     TPLILAA      ++  LI++ ADVNA  D G SAL +A +   
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 81  KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
            + A +L+ N AN ++Q+ +  TPL  AA +G     K+LL    + D  ITD     P 
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPR 118
Query: 141 HYACE 145
             A E
Sbjct: 119 DIAQE 123

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 38  PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAE-LLIHNHANVNI 96
           PL  AA  G L  +R  + N   VN     G +AL +AC  G K+I E L    +  +N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
           Q+  G T LH AA +G   +V+LLL +    D+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 88  IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
           + N   VN  D  G+T L+ A   G   +V+ L TQ  +I++N  +  G+T LH A  + 
Sbjct: 93  LDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP-NIELNQQNKLGDTALHAAAWKG 151
Query: 148 RLTDAKLLVRCGARLDIQNKEKKTPLD 174
                +LL+  GAR D++N EKK   D
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFD 178

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G LE +  L+ N  +VNA+   G +ALQ     G  EIA  L+   AN +++D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
             G   +H AA  G    ++ LL      DVNI D  GN PLH A +E  L   + LV+ 
Sbjct: 68  RTGFAVIHDAARAGQLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
             + +  +N +  T  DL  L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 3   RLLIHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
           R  +H+AA      +V +L+  K S  D +D+  +TP+ LAA  G++E+V  LI  GA V
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 62  NAKADGGHSALQYACSKGWKEIAELL 87
            A     H+A Q A +     I ++ 
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIF 365

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-ADG 67
           AA    E  +  LL+++  VD  D+  RT L+  A  G  + VRLL   GAD++ +   G
Sbjct: 51  AARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
           G +AL  A      E+ E L+   A++ ++D RG T L  A
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-ADG 67
           AA    E  +  LL+++  VD  D+  RT L+  A  G  + VRLL   GAD++ +   G
Sbjct: 52  AARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
           G +AL  A      E+ E L+   A++ ++D RG T L  A
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G++E VR L+  GAD NA    G   +Q     G  ++AELL+ + A  N  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 99  VRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
               T P+H AA +G   +  L++  R    +++ DA+G  P+  A E+     A+ L
Sbjct: 75  PATLTRPVHDAAREGF--LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 89/233 (38%), Gaps = 54/233 (23%)
Query: 6   IHWAALSGREDVVDFLL---KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           +H A +   E  +DFLL        +D ++D  +T L LAA  G+   V  L + GA V 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 63  AKADGGHSALQYACSKGWKEIAELLI--------------------------HNHANVNI 96
               GGH+AL  AC       A +L+                          H  A V+ 
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 97  Q---------------------DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           Q                     +  G TPLH A       +V+LL     D++       
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTC 191
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD---LLPLPHLAQAL 185
           G TPLH A E +  +  +LL++ GA    +    +TPL    L P P LA+ L
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 89/233 (38%), Gaps = 54/233 (23%)
Query: 6   IHWAALSGREDVVDFLL---KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           +H A +   E  +DFLL        +D ++D  +T L LAA  G+   V  L + GA V 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 63  AKADGGHSALQYACSKGWKEIAELLI--------------------------HNHANVNI 96
               GGH+AL  AC       A +L+                          H  A V+ 
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 97  Q---------------------DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
           Q                     +  G TPLH A       +V+LL     D++       
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTC 191
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD---LLPLPHLAQAL 185
           G TPLH A E +  +  +LL++ GA    +    +TPL    L P P LA+ L
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 42  AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
           AAA G + E+ RLL       +A    G +ALQ     G   +A  L+   A+ N+QD  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDAS 73
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           G +P+H AA  G    +K+L+      DVN  D+ G+ P+H A  E   +    L     
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEH--GADVNALDSTGSLPIHLAIREGHSSVVSFLA---P 128
Query: 161 RLDIQNKEKK--TPLDL 175
             D+ +++    TPL+L
Sbjct: 129 ESDLHHRDASGLTPLEL 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 42  AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
           AAA G + E+ RLL       +A    G +ALQ     G   +A  L+   A+ N+QD  
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDAS 75
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           G +P+H AA  G    +K+L+      DVN  D+ G+ P+H A  E   +    L     
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEH--GADVNALDSTGSLPIHLAIREGHSSVVSFLA---P 130
Query: 161 RLDIQNKEKK--TPLDL 175
             D+ +++    TPL+L
Sbjct: 131 ESDLHHRDASGLTPLEL 147

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 35  NRTPLIL---AAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
           N  PL L   ++  G+ ++V+ +I    D +   D G +AL  A   G  EI + L+   
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 92  ANVNIQDVRGATPLHRAASQGITPVVKLLL 121
            NVN  D  G TPLH AAS     V K L+
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLV 123

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 78  KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN 137
           +G  ++ + +I+   + ++ +  G T LH A   G T +VK L+  +  ++VN  D+ G 
Sbjct: 47  EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGW 104
Query: 138 TPLHYACEEKRLTDAKLLVRCGA 160
           TPLH A     +   K LV  GA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGA 127

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L+ ++  G+ ++V+ +I    D +   D G +AL  A   G  EI + L+    NVN  D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 99  VRGATPLHRAASQGITPVVKLLL 121
             G TPLH AAS     V K L+
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLV 123

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 78  KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN 137
           +G  ++ + +I+   + ++ +  G T LH A   G T +VK L+  +  ++VN  D+ G 
Sbjct: 47  EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGW 104
Query: 138 TPLHYACEEKRLTDAKLLVRCGA 160
           TPLH A     +   K LV  GA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGA 127

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 39  LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
           L  AAA G++E VR L+  GA+ NA    G   +Q     G   +AELL+ + A  N  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 99  VRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
               T P+H AA +G   +  L++  R    +++ DA+G  P+  A E
Sbjct: 75  PATLTRPVHDAAREGF--LDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 64  KAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
           KAD  GHSA  YA +     +   L++  A  N+  +    PLH+AA+   T +VK+LL 
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLF 83
Query: 123 QRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
             LD D    D  GNT L+YA +       KL V+   RL    K
Sbjct: 84  SGLD-DSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXFYGK 126

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           N TPLI A AA  L     L+ NGA+VN     G   L +A   G   +A L +   A++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             +D  G  PL  A       +V LL   ++
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKM 325

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           N TPLI A AA  L     L+ NGA+VN     G   L +A   G   +A L +   A++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             +D  G  PL  A       +V LL   ++
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKM 325

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           N TPLI A AA  L     L+ NGA+VN     G   L +A   G   +A L +   A++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             +D  G  PL  A       +V LL   ++
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKM 325

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 38  PLIL---AAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           PL+L   AA  G+LE+V+  +    D +   + G +AL  A       I + LI   ANV
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQ 123
           N  D  G TPLH AAS   T V+ + L Q
Sbjct: 81  NSPDSHGWTPLHCAASCNDT-VICMALVQ 108

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 8   WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAA---GKLEIVRLLISNGADVNAK 64
           +  L    D VD  L  K P+    + + T L LA  +     L IV  L+ N  +++ +
Sbjct: 144 FGLLQAYADGVD--LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
              G +AL Y C     E  +LL+   A++ I +  G TPL
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-52
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-55
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-45
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-47
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-54
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-52
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-50
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-45
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-54
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-47
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-52
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-53
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-49
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-46
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-53
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-51
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-46
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-52
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-52
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-46
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-44
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-52
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-45
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-43
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-51
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-49
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-51
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-48
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-45
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-50
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-47
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-42
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-49
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-45
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-49
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-49
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-34
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-49
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-40
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-48
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-43
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-48
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-41
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-48
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-43
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-47
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-43
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-47
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-47
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-47
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-46
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-40
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-38
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-46
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-46
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-46
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-46
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-40
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-38
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-45
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-42
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-43
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-38
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-43
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-33
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-43
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-42
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-42
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-40
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-41
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-42
2rfa_A	232	Transient receptor potential cation channel subfa	1e-39
2rfa_A	232	Transient receptor potential cation channel subfa	2e-34
2rfa_A	232	Transient receptor potential cation channel subfa	7e-32
2rfa_A	232	Transient receptor potential cation channel subfa	8e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-42
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-40
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-38
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-42
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-36
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-40
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-38
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-39
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-38
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-39
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-35
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-32
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-31
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-31
2etb_A	256	Transient receptor potential cation channel subfam	7e-30
2etb_A	256	Transient receptor potential cation channel subfam	3e-27
2etb_A	256	Transient receptor potential cation channel subfam	3e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-31
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-29
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-21
2pnn_A	273	Transient receptor potential cation channel subfa	2e-30
2pnn_A	273	Transient receptor potential cation channel subfa	2e-28
2pnn_A	273	Transient receptor potential cation channel subfa	3e-24
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	2e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-29
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-17
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  181 bits (463), Expect = 5e-56
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA  G+  V + LL+  +  +       TPL +A     L+IV+LL+  G   ++ A 
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G++ L  A  +   E+A  L+    + N + V+G TPLH AA +G   +V LLL++   
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK--Q 268

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
            + N+ +  G TPLH   +E  +  A +L++ G  +D   +   TPL
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (454), Expect = 1e-54
 Identities = 61/176 (34%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G  +V  +LL+NK+ V+ K   ++TPL  AA  G   +V+LL+ N A+ N    
Sbjct: 52  HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            GH+ L  A  +G  E    L+   A+      +G TPLH AA  G   V +LLL +  D
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER--D 169

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
              N     G TPLH A     L   KLL+  G           TPL      H+A
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL------HIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (453), Expect = 2e-54
 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H A+  G   +V  LL+  +  +  +    TPL +AA AG  E+ + L+ N A VNAKA
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
               + L  A   G   + +LL+ N+AN N+    G TPLH AA +G    V  LL +  
Sbjct: 78  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-- 135

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           +         G TPLH A +  ++  A+LL+   A  +   K   TPL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  177 bits (451), Expect = 4e-54
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA   + +V   LL+     + +     TPL LAA  G  E+V LL+S  A+ N    
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + L     +G   +A++LI +   V+     G TPLH A+  G   +VK LL     
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--Q 334

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            DVN     G +PLH A ++       LL++ GA  +  + +  TPL +
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  175 bits (447), Expect = 1e-53
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA  G  + V  LL+ ++          TPL +AA  GK+ +  LL+   A  NA   
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + L  A      +I +LL+    + +     G TPLH AA Q    V + LL     
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--G 235

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
              N     G TPLH A +E       LL+   A  ++ NK   TPL      HL 
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL------HLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (435), Expect = 9e-52
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 5/171 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA  G  ++V  LL  ++  +  + +  TPL L A  G + +  +LI +G  V+A   
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G++ L  A   G  ++ + L+ + A+VN +   G +PLH+AA QG T +V LLL     
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--G 367

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRC---GARLDIQNKEKKTPLD 174
              N   + G TPL  A     ++   +L       + + + +K + +  +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  156 bits (397), Expect = 3e-46
 Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
                ++  TPL +A+  G L IV+ L+  GA  N       + L  A   G  E+A+ L
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 88  IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
           + N A VN +     TPLH AA  G T +VKLLL    + + N+    G+TPLH A  E 
Sbjct: 67  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREG 124

Query: 148 RLTDAKLLVRCGARLDIQNKEKKTPL 173
            +     L+   A      K+  TPL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  145 bits (368), Expect = 6e-42
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H  A  G   V D L+K+   VD       TPL +A+  G +++V+ L+ + ADVNAK  
Sbjct: 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G+S L  A  +G  +I  LL+ N A+ N     G TPL  A   G   V  +L     +
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

Query: 127 -IDVNITDAYGNTPLHYA 143
              V ++D +  +     
Sbjct: 403 TSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (329), Expect = 2e-36
 Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 56  SNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP 115
           S G       + G + L  A   G   I + L+   A+ N+ +V+  TPLH AA  G T 
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           V K LL       VN       TPLH A         KLL+   A  ++      TPL
Sbjct: 62  VAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLL---ISNGADVNA 63
           H AA  G  D+V  LLKN +  +       TPL +A   G + +  +L       + V  
Sbjct: 349 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408

Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
                 S           E  + ++    +   + +
Sbjct: 409 SDKHRMSFP---------ETVDEILDVSEDEGEELI 435

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  171 bits (435), Expect = 7e-55
 Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 3/167 (1%)

Query: 7   HWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           H  A  G  D +   L+   + V+  D+   TPLI A+A G++E VR L+  GAD +  A
Sbjct: 7   HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA 66

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
               SAL  A + G+ +I  LL+    ++NI D  G TPL  A        V+ LL +  
Sbjct: 67  KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-- 124

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
             D+      G TP+  A         +++     +L   N     P
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  146 bits (370), Expect = 5e-45
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGAD-VNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
           +   +   AA G+L+ ++  +  G + VN   + G + L +A + G  E    L+   A+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 94  VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK 153
            +I      + L  A++ G T +V LLL +  D+D+NI D  G TPL YA     +   +
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 154 LLVRCGARLDIQNKEKKTPLDL 175
            L+  GA L  +     TP+DL
Sbjct: 120 ALLARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.8 bits (250), Expect = 5e-27
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 67  GGHSALQYACSKGWKEIAELLIHNHAN-VNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
           G   ++    ++G  +  +  +    N VN  D RG TPL  A++ G    V+ LL    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-- 58

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             D +I      + L  A          LL+     ++I +    TPL
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  172 bits (439), Expect = 2e-54
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
           H AA   R D    LL+  +  + +D+  RTPL  A +A    + ++LI N A D++A+ 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G + L  A     + + E LI++HA+VN  D  G + LH AA+        +LL    
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-- 179

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             + ++ +    TPL  A  E     AK+L+   A  DI +   + P D+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  159 bits (405), Expect = 3e-49
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 7   HWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           H A  +  + V   L++N+ + +D +     TPLILAA      ++  LI++ ADVNA  
Sbjct: 95  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
           D G SAL +A +    + A +L+ N AN ++Q+ R  TPL  AA +G     K+LL    
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-- 212

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
             + +ITD     P   A E       +LL          + 
Sbjct: 213 FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH--HHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  154 bits (393), Expect = 2e-47
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
                 +         V+   +    S  +  D T  T L LAA   + +  + L+   A
Sbjct: 22  GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81

Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVK 118
           D N + + G + L  A S   + + ++LI N A +++ +   G TPL  AA   +  +++
Sbjct: 82  DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141

Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL 178
            L+      DVN  D  G + LH+A     +  A +L++ GA  D+QN  ++TPL     
Sbjct: 142 DLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL----- 194

Query: 179 PHLA 182
             LA
Sbjct: 195 -FLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (348), Expect = 1e-40
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 21/169 (12%)

Query: 28  VDPKDDTNRTPLILAAAAGK-------------LEIVRLLISNGADV-NAKADGGHSALQ 73
           V+ +     TPL++A+ +G                ++   I  GA + N     G +AL 
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 74  YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
            A      + A+ L+   A+ NIQD  G TPLH A S     V ++L+  R   D++   
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARM 121

Query: 134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
             G TPL  A         + L+   A ++  +   K+ L      H A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL------HWA 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 97.2 bits (243), Expect = 4e-25
 Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 60  DVNAKADGGHSALQYACSKGW-------------KEIAELLIHNHANV-NIQDVRGATPL 105
           DVN +   G + L  A   G                +    I+  A++ N  D  G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR-LDI 164
           H AA    +   K LL      D NI D  G TPLH A         ++L+R  A  LD 
Sbjct: 62  HLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 165 QNKEKKTPLDLLPLPHLA 182
           +  +  TPL       LA
Sbjct: 120 RMHDGTTPL------ILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 24/72 (33%)

Query: 127 IDVNITDAYGNTPLHYACEEKRLTD-------------AKLLVRCGARLDIQN---KEKK 170
           +DVN+    G TPL  A       +                 +  GA   + N   +  +
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--SLHNQTDRTGE 58

Query: 171 TPLDLLPLPHLA 182
           T L      HLA
Sbjct: 59  TAL------HLA 64

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  170 bits (434), Expect = 7e-54
 Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
             AA +   + V +L+K  + VDPKD    T L LAA  G  E+V+ L+SNG  DVN + 
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
           DGG + + +A      ++ +LL+   +++NI+D      LH AA  G   + ++LL    
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA-- 166

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             D++  + +G++PLH A  E R     L +   + + ++NKE +TPL  
Sbjct: 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  166 bits (424), Expect = 2e-52
 Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 3/168 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G  D+   L++  + +D   +  RTPL+ AA    LE V+ LI  GA V+ K  
Sbjct: 16  HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75

Query: 67  GGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
            G + L  A  KG  E+ + L+ +   +VN QD  G TP+  A       +VKLLL++  
Sbjct: 76  EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-- 133

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             D+NI D   N  LH+A     +  A++L+     L   N    +PL
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  160 bits (408), Expect = 6e-50
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           H AA  G  +VV +LL N    V+ +DD   TP+I A     +++V+LL+S G+D+N + 
Sbjct: 82  HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
           +  +  L +A   G  +IAE+L+    +++  ++ G +PLH AA +     V L L++  
Sbjct: 142 NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-- 199

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           D DV + +  G TPL  A    ++  A  + +   
Sbjct: 200 DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  149 bits (379), Expect = 1e-45
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
              +    R+PL  AA AG ++I  +L+  GA+++  ++   + L  A      E  + L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 88  IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
           I   A V+ +D  G+T LH AA +G   VV+ LL+    +DVN  D  G TP+ +A E K
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYK 122

Query: 148 RLTDAKLLVRCGARLDIQNKEKKTPL 173
            +   KLL+  G+ ++I++ E+   L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (326), Expect = 1e-37
 Identities = 28/120 (23%), Positives = 51/120 (42%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
            WA      D+V  LL   S ++ +D+     L  AA +G ++I  +L++   D++A   
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G S L  A  +   +   L +   ++V +++  G TPL  A+          +     D
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (277), Expect = 3e-30
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 59  ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
            +   +     S L  A   G  +I  +L+   AN++       TPL  AA       VK
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR-LDIQNKEKKTPL 173
            L+       V+  DA G+T LH A ++      + L+  G   ++ Q+    TP+
Sbjct: 62  YLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.4 bits (197), Expect = 1e-18
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
           H N  ++     +PLH AA  G   +  +L+      +++       TPL  A E   L 
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLE 58

Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
             K L++ GA +D ++ E  T L
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCL 81

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  168 bits (428), Expect = 7e-54
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 2/162 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H  A  G    +   ++ ++ ++  D+   TPL+ AAA G++ +V  L+ NGAD      
Sbjct: 8   HQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK 67

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
           G  SAL  ACSKG+ +I ++L+    +VN  D  G TPL  A        VK+LL     
Sbjct: 68  GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--G 125

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
            D  I    G   +  A      +  +++     +L    KE
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  151 bits (383), Expect = 5e-47
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           N   +   AA G++  +   I     +N   + G + L +A + G   + E L+ N A+ 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
            +      + L  A S+G T +VK+LL     +DVN  D  G TPL YA     +   K+
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 155 LVRCGARLDIQNKEKKTPLDL 175
           L+  GA   I+       +DL
Sbjct: 121 LLESGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (265), Expect = 3e-29
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
               ++    ++G        I     +N  D  G TPL  AA+ G   VV+ LL     
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--G 59

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
            D  +      + L  AC +      K+L+ CG  ++  +    TPL
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  169 bits (432), Expect = 2e-53
 Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 5/172 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           HWAA++ R D+V + +   + VD    D N TPL  A   G L +V  L+  GAD +   
Sbjct: 47  HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID 106

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP-VVKLLLTQR 124
             G S +  A   G   I   LI    +V++ D  G TPL  AA +  +    +LLLT  
Sbjct: 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF- 165

Query: 125 LDIDVNITDAY-GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            ++ VN+ D Y  NT LH+A      T   LL+  GA +D QN + ++ LDL
Sbjct: 166 -NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  167 bits (426), Expect = 1e-52
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           I  A   G  +    L++    V   D  N T L  AA   ++++V+  IS GA V+   
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 66  -DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
            D   + L +A  +G   +   L+   A+ ++ D  G + +H AA  G T +V  L+ + 
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK- 131

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTD-AKLLVRCGARLDIQNK-EKKTPL 173
              DV++ D  G TPL +A       D  +LL+     +++ +K  K T L
Sbjct: 132 -GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  151 bits (384), Expect = 3e-46
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           HWA   G   +V  L+K  +     D    + + LAA  G   IV  LI+ G DV+    
Sbjct: 81  HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140

Query: 67  GGHSALQYACSKG-WKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQR 124
            G + L +A  +    +   LL+  + +VN+ D     T LH A   G T V+ LLL   
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA- 199

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK 170
              +V+  +  G + L  A + K +     L           K   
Sbjct: 200 -GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ-----AKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  151 bits (383), Expect = 4e-46
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
           +   DD +   ++ A   G  E  R L+  G DV        + L +A      ++ +  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 88  IHNHANVNIQDV-RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
           I   A V+       +TPLH A  QG   +V  L+      D ++ D  G + +H A + 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQF 119

Query: 147 KRLTDAKLLVRCGARLDIQNKEKKTPL 173
              +    L+  G  +D+ ++   TPL
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (322), Expect = 7e-37
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAK 64
           IH AA  G   +V +L+     VD  D    TPL+ AA     ++  RLL++    VN  
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 65  AD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
                ++AL +A   G   +  LL+   ANV+ Q+++G + L  A  +    ++  L   
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 124 RLDIDVN 130
           R     +
Sbjct: 233 RQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 95.2 bits (238), Expect = 2e-24
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 7   HWAALSG-REDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAK 64
            WAA      D    LL     V+  D  +  T L  A  AG   ++ LL+  GA+V+A+
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
              G SAL  A  +    +   L          +
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 93  NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
           ++   D      + +A   GI    + L+      DV   D    T LH+A    R+   
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 153 KLLVRCGARLDIQNKEK-KTPL 173
           K  +  GA +D    +   TPL
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPL 80

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  169 bits (430), Expect = 2e-53
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
           H AA   R D    LL+  +  + +D+  RTPL  A +A    + ++LI N A D++A+ 
Sbjct: 30  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 89

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G + L  A     + + E LI++HA+VN  D  G + LH AA+        +LL    
Sbjct: 90  HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-- 147

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             + ++ +    TPL  A  E     AK+L+   A  DI +   + P D+
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  158 bits (402), Expect = 4e-49
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 7   HWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           H A  +  + V   L++N+ + +D +     TPLILAA      ++  LI++ ADVNA  
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
           D G SAL +A +    + A +L+ N AN ++Q+ R  TPL  AA +G     K+LL    
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-- 180

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
             + +ITD     P   A E       +LL     
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  149 bits (380), Expect = 8e-46
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 10/172 (5%)

Query: 13  GREDVVDFLLKNKSPV-DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSA 71
               V+   +   + + +  D T  T L LAA   + +  + L+   AD N + + G + 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 72  LQYACSKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVN 130
           L  A S   + + ++LI N A +++ +   G TPL  AA   +  +++ L+      DVN
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVN 119

Query: 131 ITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
             D  G + LH+A     +  A +L++ GA  D+QN  ++TPL       LA
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL------FLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (339), Expect = 1e-39
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA    E +++ L+ + + V+  DD  ++ L  AAA   ++   +L+ NGA+ + + +
Sbjct: 97  ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
              + L  A  +G  E A++L+ + AN +I D     P   A  +    +V+LL      
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY--- 213

Query: 127 IDVNITDAYGNTPLH 141
                 +   +  LH
Sbjct: 214 ------NLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (322), Expect = 4e-37
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 45  AGKLEIVRLLISNGADV-NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGAT 103
                ++   I  GA + N     G +AL  A      + A+ L+   A+ NIQD  G T
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
           PLH A S     V ++L+  R   D++     G TPL  A         + L+   A ++
Sbjct: 61  PLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 164 IQNKEKKTPLDLLPLPHLA 182
             +   K+ L      H A
Sbjct: 120 AVDDLGKSAL------HWA 132

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  168 bits (428), Expect = 2e-52
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 4/169 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H A L G    V  LLK+ + V+       TPL  A  +G  + V LL+ +GA V  ++D
Sbjct: 97  HEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
              S +  A  +G  E    LI    N++ +     TPL+ A        VK LL    D
Sbjct: 157 LA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           ++        ++PLH          A LL+  GA    +N E K P++L
Sbjct: 216 VN---QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  151 bits (384), Expect = 9e-46
 Identities = 43/205 (20%), Positives = 64/205 (31%), Gaps = 40/205 (19%)

Query: 9   AALSGREDVVDFLLKNKSPVDPKDDT-------------------------------NRT 37
            +          L+   S +   D                                 + +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 38  PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
           P+  AA  G    +R LIS G  VN       S L  AC  G     ++L+ + A VN  
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 98  DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
                TPL  A   G    V LLL     +     ++   +P+H A     +     L+ 
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSLIA 178

Query: 158 CGARLDIQNKEKKTPLDLLPLPHLA 182
            G  +D +     TPL      +LA
Sbjct: 179 YGGNIDHKISHLGTPL------YLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  149 bits (380), Expect = 3e-45
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             A +SG  D V+ LL++ + V P+ D   +P+  AA  G +E V  LI+ G +++ K  
Sbjct: 130 FNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
              + L  AC    +   + L+ + A+VN Q     +PLH         +  LL+     
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDF--G 245

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
            D    +A G  P+     E  L     L R GA L 
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPLA-QLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  125 bits (316), Expect = 1e-35
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           IH AA  G  + V+ L+     +D K     TPL LA    +   V+ L+ +GADVN + 
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QG 219

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
            G  S L        +E+A LL+   A+   ++  G  P+     +   P+ +L L
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFL 273

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (289), Expect = 1e-31
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 41  LAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
           + ++         L+  G+ + +  DG    +  +   G ++   + + ++       V 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASM-DGKQGGMDGSKPAGPRDFPGIRLLSNPL-MGDAVS 58

Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
             +P+H AA  G    ++ L++Q     VNI  A   +PLH AC    L+  K+L++ GA
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116

Query: 161 RLDIQNKEKKTPL 173
           +++    +  TPL
Sbjct: 117 QVNGVTADWHTPL 129

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           H    +  E++   L+   +    K+   + P+ L      L  +  L   GA +  
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPK 282

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  165 bits (421), Expect = 5e-52
 Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN--GADV 61
           HW+      ++  FLL     V   D  DD+  TP  +A + G LE+V+ L       D+
Sbjct: 41  HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           N   + G + L  A  K W E+++ LI N A+V I+D     PLHRAAS G   +++LL 
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160

Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKEKKTPLDL 175
                  VN  D  G TPL +A  E     A LLV + GA  D+ + +     D+
Sbjct: 161 GLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  153 bits (389), Expect = 4e-47
 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 9/174 (5%)

Query: 7   HWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA-- 63
           H A +      V + L    S +  KD   R PL  + +    EI   L+S   +VN   
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66

Query: 64  -KADGGHSALQYACSKGWKEIAELLIHNH--ANVNIQDVRGATPLHRAASQGITPVVKLL 120
              D G +    ACS G  E+ + L       ++N    +G T LH A  +    V + L
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG-ARLDIQNKEKKTPL 173
           +       V I D +   PLH A     L   +LL   G + ++ Q+K+  TPL
Sbjct: 127 IEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  150 bits (382), Expect = 4e-46
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 7/153 (4%)

Query: 7   HWAALSGREDVVDFLLKN--KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           H A   G  +VV  L     K  ++   +   T L LA      E+ + LI NGA V  K
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136

Query: 65  ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
                  L  A S G  ++ ELL     + VN QD +G TPL  A ++G      LL+ +
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
               + ++ D  G      A  E+     K  +
Sbjct: 197 Y-GAEYDLVDNKGAKAEDVALNEQV---KKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  147 bits (373), Expect = 1e-44
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 35  NRTPLILAAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
           +  PL  A    +  ++  LL S  + +  K   G   L ++ S    EI   L+    N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 94  VNIQDVR---GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
           VN+ D     G TP H A S G   VVK L  + L  D+N     G T LH A  +K   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
            ++ L+  GA + I++K  + PL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 7   HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISN 57
             A   G  D    L++      D  D+       +A      ++ +  ++N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  164 bits (417), Expect = 9e-52
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 7/175 (4%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           L+  A     + V + L      VD  D    TPL +A     +EI + LI  GAD+N +
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 65  ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
                S   YA ++G  EI   ++ H   ++N  +  G   L  AA +G    VKLLL  
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTD-----AKLLVRCGARLDIQNKEKKTPL 173
               D++  + +G T L  A   +          KLL+  GA   I++   +T +
Sbjct: 129 G-REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  147 bits (373), Expect = 4e-45
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
           + A  +   ++   L+   + ++ ++  + +P + A A G+ EI+  ++ +   D+N   
Sbjct: 44  NIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN 103

Query: 66  DGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAA-----SQGITPVVKL 119
             G +AL  A  KG  +  +LL+     +++ Q+  G T L  A      +Q    +VKL
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
           L+      D +I D  G T + YA ++     +K+L 
Sbjct: 164 LMEN--GADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  143 bits (364), Expect = 1e-43
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 2/144 (1%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
           K       L  A      ++  +L      V+     G++ L  A      EIA+ LI  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
            A++N+Q+    +P   A +QG T ++  +L      D+N  + YG   L  A E+  + 
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHID 120

Query: 151 DAKLLVRCG-ARLDIQNKEKKTPL 173
           + KLL+  G   +D QN    T L
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 5e-23
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 7   HWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAA-----GKLEIVRLLISNGAD 60
             AA  G  D V  LL++ +  +D ++D   T LI A           +IV+LL+ NGAD
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLI-HN 90
            + K + G +A+ YA  KG+ EI+++L  +N
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 96  IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
           ++       L  A  +    V ++L        V+  D  GNTPL+ A     +  AK L
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDT--TYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 156 VRCGARLDIQNKEKKTPL 173
           +  GA +++QN    +P 
Sbjct: 59  IDRGADINLQNSISDSPY 76

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  164 bits (419), Expect = 1e-51
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 7/174 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA----DVN 62
           H A ++    VV  L+   +     D   +T   LA        +R L+ + A    D+ 
Sbjct: 51  HLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKLLL 121
           A+   G +AL  A +   +E  +LL+   A+++  D++ G +PL  A       +V+LLL
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170

Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
                 +VN     G++ LH A     L   + LVR GA   ++N    TPL +
Sbjct: 171 QH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  159 bits (405), Expect = 2e-49
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 7   HWAALSGREDVVDFLLKNKSP----VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           H A + G    V  L+         +D  ++  +TPL LA       +VRLL++ GA   
Sbjct: 14  HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM 73

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHA----NVNIQDVRGATPLHRAASQGITPVVK 118
           A    G +A   AC          L+ + A    ++  ++  G T LH A +      V+
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 119 LLLTQRLDIDVNITDA-YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           LLL +    D++  D   G +PL +A E   L+  +LL++ GA ++ Q     + L
Sbjct: 134 LLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  154 bits (393), Expect = 1e-47
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSP----VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           H A        +  LL + +P    ++ ++    T L +A      E V+LL+  GAD++
Sbjct: 84  HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143

Query: 63  AK-ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           A     G S L +A       + +LL+ + ANVN Q   G++ LH A+ +G+ P+V+ L+
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203

Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
                 D ++ + + +TPL  A   + +   +      A
Sbjct: 204 RS--GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  136 bits (346), Expect = 1e-40
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAEL 86
            D+   TPL +A   G L  V  L++     G +++   +   + L  A       +  L
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 87  LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ--RLDIDVNITDAYGNTPLHYAC 144
           L+   A+    D  G T  H A        ++ LL       +D+   +  G T LH A 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124

Query: 145 EEKRLTDAKLLVRCGARLDIQN-KEKKTPLDLLPLPHLA 182
             +     +LL+  GA +D  + K  ++PL        A
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPL------IHA 157

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  100 bits (252), Expect = 1e-26
 Identities = 21/87 (24%), Positives = 39/87 (44%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             A  +    +V  LL++ + V+ +  +  + L  A+  G L +VR L+ +GAD + K  
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214

Query: 67  GGHSALQYACSKGWKEIAELLIHNHAN 93
              + L  A S+   +I        A+
Sbjct: 215 HNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  100 bits (251), Expect = 2e-26
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 16/130 (12%)

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLI----HNHANVNIQDVRGATPLHRAASQGITPV 116
                + G + L  A  +G       L+         ++I +    TPLH A    +  V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR----LDIQNKEKKTP 172
           V+LL+T          D +G T  H ACE +  T  + L+   A     L+ +N +  T 
Sbjct: 62  VRLLVTA--GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 173 LDLLPLPHLA 182
           L      H+A
Sbjct: 120 L------HVA 123

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  166 bits (422), Expect = 2e-51
 Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 15/181 (8%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H A    RED+V+ LL++ +    +     TP +LAA AG +++++L +S GADVN    
Sbjct: 44  HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF 103

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQD----------VRGATPLHRAASQGITPV 116
            G +A   A   G  +  + L    ANVN++             GAT L  AA +G   V
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD----AKLLVRCGARLDIQNKEKKTP 172
           +K+LL +    DVN  D  G   L +A      +D      LL+  GA ++++ +  KTP
Sbjct: 164 LKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222

Query: 173 L 173
           L
Sbjct: 223 L 223

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  162 bits (412), Expect = 6e-50
 Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 18/183 (9%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-- 64
             AA++G   ++   L   + V+  D    T  + AA  GK++ ++ L   GA+VN +  
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

Query: 65  --------ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQG--- 112
                     GG +AL  A  KG  E+ ++L+    A+VN  D  G   L  A       
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 113 -ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK-LLVRCGARLDIQNKEKK 170
            +  +  LLL      DVN+    G TPL  A E+K L   + LL +    ++  + + K
Sbjct: 197 DVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 171 TPL 173
           T L
Sbjct: 255 TAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  156 bits (398), Expect = 8e-48
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNR-TPLILAAAAGKLEIVRLLISNGADVNAKA 65
             A  +   D+V  LL+  + V+ +++    TPL  A    + +IV LL+ +GAD   + 
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G +    A   G  ++ +L +   A+VN  D  G T    AA  G    +K L  +  
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129

Query: 126 DI--------DVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKEKKTPL 173
           ++        D       G T L  A E+  +   K+L+   GA ++  +   +  L
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  149 bits (380), Expect = 4e-45
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 16/175 (9%)

Query: 7   HWAALSGREDVVDFLL----------KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
             AA+ G+   + FL           K K   +       T L+ AA  G +E++++L+ 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 57  N-GADVNAKADGGHSALQYACSKG----WKEIAELLIHNHANVNIQDVRGATPLHRAASQ 111
             GADVNA  + G +AL +A         + I  LL+ + A+VN++  RG TPL  A  +
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
               +V+ LL Q   I++N TD+ G T L  A E K    A+LL + GA  D  +
Sbjct: 230 KHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (354), Expect = 3e-41
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKGWKEIAELLIHNHAN 93
           +   LI A     +++V+ L+  GA+VN +  +GG + L  A     ++I ELL+ + A+
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 94  VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK 153
             ++   GATP   AA  G   ++KL L++    DVN  D YG T    A    ++   K
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 154 LLVRCGARLDIQNKEKKTP 172
            L + GA ++++ K K+  
Sbjct: 123 FLYKRGANVNLRRKTKEDQ 141

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 98.7 bits (247), Expect = 2e-25
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 7   HWAALSGR----EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADV 61
             A LS      E +   LL + + V+ + +  +TPLILA     L +V+ L+     ++
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
           N     G +AL  A     K+IAELL    A+ +  D+
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 1e-13
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 98  DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY-GNTPLHYACEEKRLTDAKLLV 156
            V     L +A       +V+ LL      +VN  +   G TPLH A +  R    +LL+
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 157 RCGARLDIQNKEKKTPL 173
           R GA   ++ K   TP 
Sbjct: 60  RHGADPVLRKKNGATPF 76

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  158 bits (403), Expect = 6e-50
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 6   IHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           I      G    V   L N  + ++  DD   +PL  A   G+  +V +LI  GA +N  
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
             G  + L  A S G ++I + L+   A++N  +  G  PLH A   G   V + L+   
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN- 127

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
               V+I + YG  P+  A    R    +   + G 
Sbjct: 128 -GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  152 bits (386), Expect = 2e-47
 Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 32  DDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHN 90
                  +      G    VRL + N   D+N   D G S L +AC +G   + E+LI  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
            A +N+ +    TPLH AAS G   +V+ LL  +   D+N  + +GN PLHYAC   +  
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK--ADINAVNEHGNVPLHYACFWGQDQ 119

Query: 151 DAKLLVRCGARLDIQNKEKKTPLDL 175
            A+ LV  GA + I NK  + P+D 
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  139 bits (353), Expect = 2e-42
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           HWA   GR  VV+ L+   + ++  +  + TPL LAA+ G  +IV+ L+   AD+NA  +
Sbjct: 44  HWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 103

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G+  L YAC  G  ++AE L+ N A V+I +  G  P+ +A +     + +       +
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163

Query: 127 ID-VNITDAYGNT 138
           ++ +   D +   
Sbjct: 164 LNRIPYKDTFWKG 176

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  156 bits (398), Expect = 3e-49
 Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 2/150 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA +GR+D V  L+ N + V+ +D +  TPL LAA  G LEIV +L+ NGADVNA   
Sbjct: 19  LEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH 78

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + L+ A   G  EI E+L+ N A+VN  D+ G TPLH AA  G   +V++LL     
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--G 136

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
            DVN  D +G T    + +      A++L 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  146 bits (372), Expect = 3e-45
 Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
             L+ AA AG+ + VR+L++NGADVNA+   G + L  A   G  EI E+L+ N A+VN 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
            D  G TPL  AA  G   +V++LL      DVN  D  G+TPLH A     L   ++L+
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133

Query: 157 RCGARLDIQNKEKKTPLDL 175
           + GA ++ Q+K  KT  D+
Sbjct: 134 KNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  106 bits (268), Expect = 9e-30
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 11/127 (8%)

Query: 58  GADVNAK--ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP 115
           G+  +    +D G   L  A   G  +   +L+ N A+VN +D  G TPLH AA  G   
Sbjct: 3   GSHHHHHHGSDLG-KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +V++LL      DVN  D  G TPL  A     L   ++L++ GA ++  + E  TPL  
Sbjct: 62  IVEVLLKN--GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL-- 117

Query: 176 LPLPHLA 182
               HLA
Sbjct: 118 ----HLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.8 bits (136), Expect = 3e-10
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
           H AA+ G  ++V+ LLKN + V+ +D   +T   ++   G  ++  +L  
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  157 bits (399), Expect = 4e-49
 Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 8/175 (4%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N  ++            +DFL       + +D  NRTPL++A   G    +  L+ N   
Sbjct: 7   NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           +  K   G +AL +A       IAE L+   +NVN +D  G TPL  +   G + +   L
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           L      +VN  +  G TPL  A +  R    K L+  GA +  ++    T    
Sbjct: 121 LEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  156 bits (398), Expect = 5e-49
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             A + G E+ +D L++N   ++ KD    T LI A    +L I   L+S G++VN K  
Sbjct: 40  MVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF 99

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + L ++   G+ E++  L+ + ANVN +++ G TPL  A+  G + +VK LL     
Sbjct: 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--G 157

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
            D++  D  G T    A    R    K+  
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  120 bits (303), Expect = 1e-34
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 8/143 (5%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
            D        +       + +  L       N +     + L  AC  G +   + L+ N
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
              +  +D+ G+T L  A       + + LL++    +VN  D  G TPL ++       
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
            +  L+  GA ++ +N E +TPL
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.9 bits (131), Expect = 1e-09
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
             A+  GR ++V  LL+  + +  +D T  T    A   G+ E++++      
Sbjct: 139 IVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  160 bits (406), Expect = 4e-49
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 6/168 (3%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           ++A       +V  LL   +  +  +  N  PL  AA     +IV++L+ +G D +   D
Sbjct: 36  YYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRG-ATPLHRAASQGITPVVKLLLTQRL 125
            G++AL YA   G  +  +L +  +  +      G  T  + A       +V   L++  
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI- 152

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
                   A   + +H   +   +    LL+      +  N     P 
Sbjct: 153 --PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  141 bits (358), Expect = 7e-42
 Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           ++A  SG    V   +K    +     T  +T    A     + IV   +S        A
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP-LHRAASQGITPVVKLLLTQR 124
               S +      G  ++  LL+    + N  +     P +  A       +++ L    
Sbjct: 160 IL-LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           ++I          +             AK+++         +  K   +
Sbjct: 219 INI---------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  137 bits (347), Expect = 3e-40
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
              + +   +   L +K      D    +    A A   + +V  L++ GA  N      
Sbjct: 6   RINTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--EN 62

Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
              L  A +    +I ++L+ +  + +  D +G T L+ A   G    VKL + +  +  
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWR 120

Query: 129 VNITDAYG-NTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
           +      G  T  ++A     ++     +              + +      H+ 
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCI------HIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  126 bits (320), Expect = 3e-36
 Identities = 14/152 (9%), Positives = 46/152 (30%), Gaps = 11/152 (7%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           + A +     +V + L ++ P         + + +    G ++++ LL+      N    
Sbjct: 134 YHAVMLNDVSIVSYFL-SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS 192

Query: 67  GGHS-ALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
                 ++ A      E+ + L     N+        +            + K+++ +  
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEK-- 243

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
            ++        +  +    +   +      +R
Sbjct: 244 HVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  124 bits (314), Expect = 2e-35
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 40  ILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
           +      K + ++  + +  D       GHSA  YA +     +   L++  A  N+ + 
Sbjct: 4   LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
               PLH+AA+   T +VK+LL     +D +  D  GNT L+YA +   +   KL V+  
Sbjct: 62  -NEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

Query: 160 ARLDIQNKE-KKTPL 173
            RL    K   KT  
Sbjct: 119 WRLMFYGKTGWKTSF 133

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 7/89 (7%), Positives = 22/89 (24%), Gaps = 7/89 (7%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
            I  A  +   +++  L K    +        +  +        EI +++I    +  + 
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSD 250

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHAN 93
           +      +               +     
Sbjct: 251 SYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  154 bits (393), Expect = 1e-48
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 2/154 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA  G  + +  LL+N   V+ ++   RT L      G  EI R L+  GA+ + K  
Sbjct: 10  ASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDR 68

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + +  A   G+ +  + L+   A+VNI+D  G  PLH AA +G   VV+ L+     
Sbjct: 69  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA- 127

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
            +V   +  G+T    A    R     L+   GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  141 bits (359), Expect = 2e-43
 Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 32  DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
            +     L  AAA G LE +  L+ N  +VNA+   G +ALQ     G  EIA  L+   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRG 60

Query: 92  ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
           AN +++D  G   +H AA  G    ++ LL      DVNI D  GN PLH A +E  L  
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 152 AKLLVRCGAR-LDIQNKEKKTPLDL 175
            + LV+  A  +  +N +  T  DL
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDL 143

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  155 bits (395), Expect = 5e-48
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 2/168 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
                +         + +   V   +      L+ ++  G+ ++V+ +I    D +   D
Sbjct: 10  PPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND 68

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G +AL  A   G  EI + L+    NVN  D  G TPLH AAS     V K L+     
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 127 ID-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           +  +  +D           EE     ++ L     ++ I NK     L
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  146 bits (372), Expect = 2e-44
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             ++L G  D+V  ++         +D   T L  A  AG  EIV+ L+  G +VNA   
Sbjct: 42  LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQ---DVRGATPLHRAASQGITPVVKLLLTQ 123
            G + L  A S    ++ + L+ + A V      D++ A        +G T   + L   
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLL 176
                + I +      L     +    D +L ++ G  + I ++E +  ++  
Sbjct: 162 --QEKMGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHREDEDEIEWW 209

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  137 bits (348), Expect = 6e-41
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 4/145 (2%)

Query: 32  DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
           + T +  L         +     I++G  V        + L  +  +G  ++ + +I+  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 92  ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
            + ++ +  G T LH A   G T +VK L+     ++VN  D+ G TPLH A     +  
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 152 AKLLVRCGARLDIQN-KEKKTPLDL 175
            K LV  GA +      + +T  D 
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADK 143

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 11/127 (8%)

Query: 7   HWAALSGREDVVDFLLK---NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           H AA      V  FL++       +   D             G  +  + L      +  
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167

Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNI--QDVRGATPLHRAAS---QGITPVVK 118
              G   AL     +      EL +     + I  ++         A     +G  P   
Sbjct: 168 MNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNL 224

Query: 119 LLLTQRL 125
           L L  R+
Sbjct: 225 LGLYPRI 231

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 7/74 (9%), Positives = 17/74 (22%), Gaps = 3/74 (4%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
                  G      FL   +  +   +      L         E   L +  G  +    
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIH 199

Query: 66  DGGHSALQYACSKG 79
                 +++  ++ 
Sbjct: 200 REDEDEIEWWWARL 213

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  152 bits (388), Expect = 7e-48
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA +G++D V  L+ N +P    D    +PL LAA  G      +L+  G   +A+  
Sbjct: 7   LEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
              + L  A S+G   I E+L+ + A+VN +D+   T LH A       VV+LL+     
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--G 123

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLL 155
            DV+    +  T    + +      A++L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  140 bits (355), Expect = 5e-43
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
             L+ AA AG+ + VR+L++NGA       G  S L  A   G     E+L+    + + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
           +     TPLH AAS+G   +V++LL      DVN  D    T LH+A E       +LL+
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 157 RCGARLDIQNKEKKTPLDL 175
           + GA +  Q+K  KT  D+
Sbjct: 121 KYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.5 bits (239), Expect = 2e-25
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
               L  A   G  +   +L+ N A     D  G +PLH AA  G     ++LL     +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GV 58

Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
             +       TPLH A  E      ++L++ GA ++ ++  K T L      H A
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL------HWA 107

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  158 bits (402), Expect = 1e-47
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)

Query: 7   HWAALSGRE--DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI-----SNGA 59
           HW    G E  +++  L++  +    KD  + TPL+ A      E + L++      +  
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202

Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
            ++     G+S L +A    W+++A   +    +VN++D     PL+ +    +  + K 
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 120 LLTQRLDI-----------DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
           LL +                V          +  A +  +    +LL      +      
Sbjct: 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT 322

Query: 169 KKTPLDL 175
                  
Sbjct: 323 GAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  155 bits (395), Expect = 1e-46
 Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 20/187 (10%)

Query: 7   HWAALSGREDVVDFLLKNKSP-----VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
             A      + +D ++          +D  +    + L  A      ++    +  G DV
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237

Query: 62  NAKADGGHSALQYACSKGWKEIAELLI-------------HNHANVNIQDVRGATPLHRA 108
           N + +     L  +       + + L+             HN   V    V     +  A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 109 ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
           A      V++LL  +    +V  +   G        ++      ++ +   A +  +++ 
Sbjct: 298 ADPSKQEVLQLLQEK--LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355

Query: 169 KKTPLDL 175
           +     +
Sbjct: 356 RARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  146 bits (370), Expect = 7e-43
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 18/170 (10%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           IH AA  G+ D V  L++       ++    T L LA   G ++  + L S G   +   
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW- 82

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G   +  A      ++   L+            G  P           V +       
Sbjct: 83  -HGQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREVNE------- 128

Query: 126 DIDVNITDAYGNTPLHYACEE--KRLTDAKLLVRCGARLDIQNKEKKTPL 173
            I  ++    G T LH+      + L   K+LV+ GA    ++K  +TPL
Sbjct: 129 -IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  136 bits (344), Expect = 5e-39
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 15/150 (10%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS---------- 56
           HWA L   EDV    ++    V+ +D+ +  PL L+  A  + + + L+           
Sbjct: 216 HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQAC 275

Query: 57  ---NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
              NG  V          +  A     +E+ +LL      V      GA    +   +  
Sbjct: 276 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA 335

Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
             V ++ L       V             +
Sbjct: 336 PAVKRMKLAP--SAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.8 bits (203), Expect = 8e-19
 Identities = 9/70 (12%), Positives = 25/70 (35%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +  AA   +++V+  L +    V    +T     +         + R+ ++  A V  ++
Sbjct: 294 VPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRS 353

Query: 66  DGGHSALQYA 75
                +   +
Sbjct: 354 RSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 84  AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
             +      N    D      +H AA +G T  V+ L+     +   I + +G T LH A
Sbjct: 3   GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLA 60

Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           C+   +  AK L   G          + P+
Sbjct: 61  CKFGCVDTAKYLASVGE--VHSLWHGQKPI 88

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
           +T    ++   +D      +H A  + +  + + L+  G    IQN+   T L      H
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL------H 58

Query: 181 LA 182
           LA
Sbjct: 59  LA 60

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  152 bits (386), Expect = 2e-47
 Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
             AA +G  + V  L   +S      +    TPL  AA   ++ +V  L+ +GADV+AK 
Sbjct: 13  LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
            GG   L  ACS G  E+AELL+ + A VN+ D+   TPLH AA++G   + KLLL    
Sbjct: 73  KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-- 130

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
             D    +  GNTPL    +        LL    A
Sbjct: 131 GADPTKKNRDGNTPLDLVKDGDTDI-QDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  137 bits (349), Expect = 8e-42
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGHSALQYACSKGWKEIAELLIH 89
            +      L+ AA AG +E V+ L +    +         + L +A       + E L+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 90  NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRL 149
           + A+V+ +D  G  PLH A S G   V +LL+       VN+ D +  TPLH A  + + 
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKY 121

Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
              KLL++ GA    +N++  TPLDL
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDL 147

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  157 bits (399), Expect = 4e-47
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 15/183 (8%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN---GADVNA 63
             A L+ R  +V +L+K  +     + + R+ L  AAA     ++  ++++     D+  
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230

Query: 64  KADGGHSALQYACSKGWKE---IAELLIHNHANVNI--------QDVRGATPLHRAASQG 112
               G +AL        ++    A+LL+   A V+         +  +G T LH AA   
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290

Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
             P+VK L+ ++   + +  D  G TP+  A +E R+     L++ GA ++  +    T 
Sbjct: 291 NMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349

Query: 173 LDL 175
             L
Sbjct: 350 RQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  144 bits (365), Expect = 4e-42
 Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 7   HWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGKLE---IVRLLISNGAD 60
           H AA +    ++ ++L +      ++  D    T L++ A     +     +LL+  GA 
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263

Query: 61  VN--------AKADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQ 111
           V+        ++   G +AL YA       I + L+    +N + QD  G TP+  AA +
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 323

Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
           G   VV  L+ Q     V   DA  +T    A          +  RC    +
Sbjct: 324 GRIEVVMYLIQQ--GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  142 bits (360), Expect = 2e-41
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN--- 57
              + +H  A +G   + + + +    +      NRT L   A+    E    LI +   
Sbjct: 93  ESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 150

Query: 58  -----GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
                GADVNA     ++ L  A     + +   L+   A+  I +    + LH+AA+  
Sbjct: 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 210

Query: 113 ITPVVKLLLTQRLD-IDVNITDAYGNTPLHYACEEK---RLTDAKLLVRCGA-------- 160
              ++  +L       D+   D  G T L      +   ++  AKLLV  GA        
Sbjct: 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 161 RLDIQNKEKKTPL 173
           R D +  + +T L
Sbjct: 271 RKDSEKYKGRTAL 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  142 bits (360), Expect = 2e-41
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
                 +G + + DF   N       +  +   L    AAG   I   +     ++    
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH-TEAAGSYAITEPITRESVNIIDP- 122

Query: 66  DGGHSALQYACSKGWKEIAELLIHNH--------ANVNIQDVRGATPLHRAASQGITPVV 117
               + L +  S    E +E LI +         A+VN  D    TPL  A       +V
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV---RCGARLDIQNKEKKTPL 173
             L+      D  I +    + LH A   +       ++   +    ++  ++   T L
Sbjct: 183 AYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (253), Expect = 8e-26
 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 27/168 (16%)

Query: 23  KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE 82
           +          +++  L+ A+  G ++  R         N                G   
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDF 75

Query: 83  IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHY 142
           + +    N       +      LH  A  G   + + +  +   +++     +  T LH+
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRE--SVNII-DPRHNRTVLHW 131

Query: 143 ACEEKRL--------TDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
                           +AK  +  GA ++  + ++ TPL       LA
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL------MLA 173

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  152 bits (387), Expect = 9e-47
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 19/187 (10%)

Query: 7   HWAALSGR----EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           H A +        +V+  +  + + ++ +++  +TPL LA    + EI   L+  G D  
Sbjct: 13  HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE 72

Query: 63  AKADGGHSALQYACSKGWKEIAELLI------HNHANVNIQDVRGATPLHRAASQGITPV 116
            +   G++ L  AC +G      +L       H H+ +   +  G T LH A+  G   +
Sbjct: 73  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 117 VKLLLTQRLDIDVNITD-AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           V+LL++     DVN  +   G T LH A + +      LL++CGA ++    +  +P   
Sbjct: 133 VELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-- 188

Query: 176 LPLPHLA 182
                L 
Sbjct: 189 ----QLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  150 bits (380), Expect = 9e-46
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD------ 60
           H A ++ + ++ + LL      + +D    TPL LA   G L  V +L  +         
Sbjct: 50  HLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKL 119
           + A    GH+ L  A   G+  I ELL+   A+VN Q+   G T LH A       +V L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           LL      DVN     G +P             + L +          E +     
Sbjct: 170 LLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  135 bits (343), Expect = 3e-40
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 31  KDDTNRTPLILAAAAG----KLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAEL 86
             +   + L LA         +E++R +  + A +N + +   + L  A      EIAE 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 87  LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI----DVNITDAYGNTPLHY 142
           L+    +  ++D RG TPLH A  QG    V +L            +  T+  G+T LH 
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 143 ACEEKRLTDAKLLVRCGARLDIQNKEK-KTPLDLLPLPHLA 182
           A     L   +LLV  GA ++ Q     +T L      HLA
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTAL------HLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  130 bits (329), Expect = 5e-38
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 7   HWAALSGREDVVDFLLKN------KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           H A   G    V  L ++       S +   +    T L LA+  G L IV LL+S GAD
Sbjct: 83  HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142

Query: 61  VNAKADG-GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
           VNA+    G +AL  A      ++  LL+   A+VN    +G +P      +  T + + 
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
           L   +L ++             Y  E +     
Sbjct: 203 LG--QLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 96.9 bits (242), Expect = 4e-25
 Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 63  AKADGGHSALQYACSKGWK----EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
              + G S L  A     K    E+   +  + A +N Q+    TPLH A       + +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA------RLDIQNKEKKTP 172
            LL      D  + D  GNTPLH ACE+  L    +L +          L   N    T 
Sbjct: 63  ALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 173 LDLLPLPHLA 182
           L      HLA
Sbjct: 121 L------HLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 77.2 bits (191), Expect = 9e-18
 Identities = 15/79 (18%), Positives = 22/79 (27%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H A      D+V  LLK  + V+       +P  L        I + L     +      
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

Query: 67  GGHSALQYACSKGWKEIAE 85
                  Y     + E  E
Sbjct: 216 ESEDEESYDTESEFTEFTE 234

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  151 bits (383), Expect = 2e-46
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 6/170 (3%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +  A  +      D L   +  +    D + T      + G+  ++         V  +A
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAEQA 70

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
           +   + L  A  +G        + N   VN  D  G+T L+ A   G   +V++L TQ  
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP- 129

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +I++N  +  G+T LH A  +      +LL+  GAR D++N EKK   D+
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  150 bits (382), Expect = 3e-46
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
                 GR  ++      +     + ++   PL  AA  G L  +R  + N   VN    
Sbjct: 50  WKGTSKGRTGLIPSNYVAE-----QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104

Query: 67  GGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
            G +AL +AC  G K+I E+L    +  +N Q+  G T LH AA +G   +V+LLL +  
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-- 162

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
               ++ +         A      +  K      A   + N E     
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  145 bits (368), Expect = 4e-44
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADVNAKA 65
           H AA  G    +   L N+  V+  D    T L  A   G  +IV +L +    ++N + 
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G +AL  A  KG+ +I +LL+   A  +++++        A +     ++K       
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-- 195

Query: 126 DIDVNITDAYGNTPLHYACEE 146
           D    +++A        +  E
Sbjct: 196 DAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  122 bits (308), Expect = 4e-35
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 36  RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
           +  +  A    +      L     D+    D   +      SKG        +     V 
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVA 67

Query: 96  IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
            Q      PLH AA +G    ++  L  R  + VN  D  G+T L++AC        ++L
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 156 V-RCGARLDIQNKEKKTPL 173
             +    L+ QNK   T L
Sbjct: 126 FTQPNIELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  112 bits (282), Expect = 3e-31
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 7   HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +WA   G +D+V+ L    +  ++ ++    T L  AA  G  +IV+LL++ GA  + + 
Sbjct: 111 YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
                A   A +     + +      A   + +         +  + 
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.5 bits (220), Expect = 4e-22
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 7/112 (6%)

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
                 G   +  A         + L     ++        T   +  S+G T ++    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
                  V       + PLH A +   L+  +  +     ++  +K   T L
Sbjct: 63  ----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 14/81 (17%)

Query: 102 ATPLHRAASQGITPVVKLLLTQRLDI---------DVNITDAYGNTPLHYACEEKRLTDA 152
           + P  +    G   V + L T              D+       +T       +      
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----G 56

Query: 153 KLLVRCGARLDIQNKEKKTPL 173
           +  +     +  Q +    PL
Sbjct: 57  RTGLIPSNYVAEQAESIDNPL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (392), Expect = 3e-46
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 2/160 (1%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           L+  A     E ++  L          D    TPL LAA   ++ IV+LL+ +GADV+AK
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
             GG   L  ACS G  E+ ELL+ + A VN  D+   TPLH AAS+    V  LLL+  
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH- 146

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
              D  + + +G + +  A   +         +  + L  
Sbjct: 147 -GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (371), Expect = 4e-43
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 26/193 (13%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIV--------------- 51
           H AA   R +V   LL + +     +   ++ + +A      E +               
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188

Query: 52  ------RLLISNGADVNAKADGGHSALQYACSKGW---KEIAELLIHNHANVNIQDVRGA 102
                 +  ++       +     +AL  A +      K++AELL+   ANVN ++    
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM 248

Query: 103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL 162
           TPLH AA +    V+++L        +N  D+ G T LH A     L   +LL+  G+  
Sbjct: 249 TPLHVAAERAHNDVMEVLHKH--GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306

Query: 163 DIQNKEKKTPLDL 175
            I + +  T   +
Sbjct: 307 SIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (370), Expect = 5e-43
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 21  LLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAKADGGHSALQYACSKG 79
           L    +      +  +  L+ AA +G + +++ LL     + +A      + L  A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 80  WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP 139
              I +LL+ + A+V+ +D  G  PLH A S G   V +LLL       VN  D +  TP
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTP 127

Query: 140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           LH A  + R+    LL+  GA   + N   K+ +D+
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  130 bits (330), Expect = 4e-37
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 7   HWAALSG---REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           H A  S    R+ V + LL+  + V+ K+    TPL +AA     +++ +L  +GA +NA
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275

Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
               G +AL  A   G  +   LL+   ++ +I  ++G T             V+ +L++
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSE 330

Query: 124 RLDIDVNITDAYGNTPLHYACEE 146
              +    +D   +  L  A + 
Sbjct: 331 STPM--RTSD--VDYRLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (307), Expect = 1e-33
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 49  EIVRLLISNGADVNAKAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
           +    L    A      +      L+ A S   +++  LL   + N +  D R +TPLH 
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
           AA      +V+LLL      DV+  D  G  PLH AC        +LL++ GA ++  + 
Sbjct: 65  AAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122

Query: 168 EKKTPL 173
            + TPL
Sbjct: 123 WQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (266), Expect = 1e-27
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA     DV++ L K+ + ++  D   +T L  AA AG L+  RLL+S G+D +  + 
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
            G +A Q        E  + ++     +   DV     L  A+  G
Sbjct: 312 QGFTAAQMG-----NEAVQQILSESTPMRTSDVDY--RLLEASKAG 350

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  148 bits (376), Expect = 5e-46
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 5/151 (3%)

Query: 7   HWAALSGREDVVDFLL-KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
             AA  G    V  LL +     D  +   +T L      G   I   L+  GA  N + 
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQD 65

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G S +  A   G+ +  ++L+ + A+VN+ D  GA P+H A  +G T VV  L  +  
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-- 123

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
             D++  DA G TPL  A +        +L 
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  132 bits (336), Expect = 4e-40
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 37  TPLILAAAAGKLEIVR-LLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
             L  AAA G ++ VR LL       +A    G +ALQ     G   IA  L+   A+ N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 62

Query: 96  IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
           +QD  G +P+H AA  G    +K+L+      DVN+ D  G  P+H A +E        L
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 156 VRCGARLDIQNKEKKTPLDL 175
               + L  ++    TPL+L
Sbjct: 121 AA-ESDLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  127 bits (321), Expect = 9e-38
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
                 G   +   LLK  +  + +D +  +P+  AA  G L+ +++L+ +GADVN    
Sbjct: 41  QVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
            G   +  A  +G   +   L    ++++ +D RG TPL  A  +G   +V +L   
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.1 bits (230), Expect = 3e-24
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 71  ALQYACSKG-WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
            L  A ++G  +E+  LL     + +  +  G T L      G T +   LL Q      
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQ--GASP 61

Query: 130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
           N+ D  G +P+H A     L   K+LV  GA +++ +     P+      HLA
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI------HLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.4 bits (158), Expect = 1e-13
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
           R    L  AA++G    V+ LL +   +  +  + +G T L           A  L++ G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQG 58

Query: 160 ARLDIQNKEKKTPL 173
           A  ++Q+    +P+
Sbjct: 59  ASPNVQDTSGTSPV 72

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  148 bits (375), Expect = 1e-45
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
              +        G            + V  +     TP   AA     + +  L+    D
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLLE-DRD 68

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKL 119
           V+A  + G +AL +    G  +   LL    A+++ +D+R G T LH AA      VV+ 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
           L+      D+ + D  G T L  A E  + T     ++ G R+ ++ 
Sbjct: 129 LVEL--GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  133 bits (338), Expect = 5e-40
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
                    ++    G            ADV ++     +    A  K  ++    L+  
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE- 65

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRL 149
             +V+  D  G T L   A  G    V+LL       D++  D   G T LH A    R 
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRP 123

Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
              + LV  GA ++++++   T L+L
Sbjct: 124 EVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (263), Expect = 8e-29
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAKA 65
            + A  G +  V  L +  + +D +D     T L +AA   + E+V  L+  GAD+  + 
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
           + G +AL+ A            +     + ++ V
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.0 bits (214), Expect = 2e-21
 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 13/127 (10%)

Query: 57  NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV 116
           N    +  A  G          G         +  A+V        TP   AA +     
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQA 59

Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN-KEKKTPLDL 175
           +  LL    D DV+  D  G T L +          +LL   GA LD ++ +   T L  
Sbjct: 60  LSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL-- 114

Query: 176 LPLPHLA 182
               H+A
Sbjct: 115 ----HMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 16/67 (23%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLE----------------I 50
           H AA   R +VV+ L++  + ++ +D+   T L LA    K                  +
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

Query: 51  VRLLISN 57
           + +L   
Sbjct: 175 INVLEGQ 181

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  150 bits (382), Expect = 1e-45
 Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 17/184 (9%)

Query: 7   HWAALSGREDVVDFLLKN-------------KSPVDPKDDTNRTPLILAAAA-GKLEIVR 52
           H A           LL+                  D   DT+  P  + +    + E   
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 53  LLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQ 111
                   + A+   GH+ L  A      E+  LL    A++N  +   G TPLH A   
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKT 171
               V++LLL      D       G TPL  A        A+LL   GA       +K +
Sbjct: 203 QAASVLELLLKA--GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260

Query: 172 PLDL 175
           P   
Sbjct: 261 PCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  148 bits (377), Expect = 9e-45
 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 24/193 (12%)

Query: 7   HWAALSGREDVVDFLLK---NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           H A +   E  +DFLL        +D ++D  +T L LAA  G+   V  L + GA V  
Sbjct: 14  HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV-------------RGATPLHRAAS 110
              GGH+AL  AC       A +L+    +                       P    + 
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEK- 169
                  +        + +   +  G+TPLH A   K     +LL   GA L+       
Sbjct: 134 PNPENEEEPRDEDW-RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192

Query: 170 KTPLDLLPLPHLA 182
           +TPL      HLA
Sbjct: 193 RTPL------HLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  141 bits (357), Expect = 9e-42
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 3/143 (2%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
               +  +   +        +  ++ ++    TPL +A      E+VRLL   GAD+N  
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 65  -ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
               G + L  A       + ELL+   A+   +   G TPL  A  +    + +LL   
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 124 RLDIDVNITDAYGNTPLHYACEE 146
                         +P   +  +
Sbjct: 248 --GAPEPEDGGDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (320), Expect = 3e-36
 Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGAD---VNAKADGGHSALQYACSKGWKEIAELL 87
             +   T L LA        +  L+   A    ++ + D G +AL  A   G     E L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 88  IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY-----------G 136
               A V + +  G T LH A          +LL  R     + +D Y            
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 137 NTPLHYACEEKRLTD-AKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
           + P     +     +          +L+ +N +  TPL      H+A
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL------HVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  123 bits (311), Expect = 7e-35
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           H A +    ++V  L    + ++  +    RTPL LA  A    ++ LL+  GAD  A+ 
Sbjct: 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM 222

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
            GG + L  A  +    +A LL  + A          +P   + S   +       
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.1 bits (240), Expect = 1e-24
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHAN---VNIQDVRGATPLHRAASQGITPVV 117
                + G +AL  A     +   + L+   A    +++Q+  G T LH AA  G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           + L        V + +  G+T LH AC  +  T A +L++          +     
Sbjct: 62  EKLYAA--GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  149 bits (378), Expect = 1e-44
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
                 G E  ++  +  +     K D +    + A ++G  E V  L+  GAD+N    
Sbjct: 13  QLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANV 71

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G +AL  AC     ++ + L+ N AN+N  D  G  PLH AAS G   + + L++Q   
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ--G 129

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKEKKTPL 173
             V   ++ G+TPL  A EE      +  V R G  ++   KE++  +
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  147 bits (374), Expect = 4e-44
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             A  SG  + V  LL+  + ++  +    T L  A     +++V+ L+ NGA++N   +
Sbjct: 45  LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G   L  A S G+ +IAE LI   A+V   +  G TPL  A  + +  +++  + ++  
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-G 163

Query: 127 IDVNITDAYGNT--------------------------PLHYACEEKRLTDAKLLVRCGA 160
           +D+                                    LH A  +      KLL++   
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 161 RLDIQNKEKKTPL 173
            ++I++ +  TPL
Sbjct: 224 DVNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  145 bits (368), Expect = 4e-43
 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKA 65
           H AA  G  D+ ++L+   + V   +    TPL +A      E+++  ++  G D+ A  
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-- 168

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
                A +       ++  + L   H N       G T LH AA++G T V+KLL+  R 
Sbjct: 169 -----ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR- 222

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             DVNI D  G TPLH A    +    ++LV     ++  NK  +T  D+
Sbjct: 223 -YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  134 bits (340), Expect = 5e-39
 Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 3/145 (2%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
            D   +    L    G    +   +        K D G +    ACS G  E    L+  
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
            A++N  +V G T LH+A       +VK L+      ++N  D  G  PLH A     L 
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLD 120

Query: 151 DAKLLVRCGARLDIQNKEKKTPLDL 175
            A+ L+  GA +   N E  TPLD+
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  132 bits (335), Expect = 3e-38
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             A     E+++   +      + +                 +  + L S   +    A 
Sbjct: 144 DIAEEEAMEELLQNEV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G +AL  A +KG+ E+ +LLI    +VNI+D  G TPLH AA  G     ++L+     
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN--L 255

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
            D+   +  G T    A E+        L     + ++ + EK+  
Sbjct: 256 CDMEAVNKVGQTAFDVADEDIL----GYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.0 bits (245), Expect = 4e-25
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           +           Q     G +   E  +       ++   G      A S G T  V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           L +    D+N  +  G T LH AC +  +   K LV  GA ++  + E   PL
Sbjct: 60  LER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  144 bits (364), Expect = 2e-43
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 2/173 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           +  ++ + A     +++ + +L +KS     D  +RT L  A +AG  EIV  L+  G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
           VN K D G S L  A S G  EI + L+   A+VN  +  G TPLH AAS+    +  +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           L      + +  D Y  T +H A  +  L    +L+   A  +IQ+ E  TPL
Sbjct: 126 LEG--GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  135 bits (341), Expect = 4e-40
 Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 8/182 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           HWA  +G  ++V+FLL+   PV+ KDD   +PL +AA+AG  EIV+ L+  GA VNA   
Sbjct: 45  HWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + L YA SK   EIA +L+   AN + +D   AT +HRAA++G   +V +LL     
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY--K 162

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT 186
              NI D  GNTPLH AC+E+R+ +AK LV  GA + I+NKE+KTPL       +A+   
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL------QVAKGGL 216

Query: 187 EI 188
            +
Sbjct: 217 GL 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  129 bits (326), Expect = 8e-38
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
              +N     LA +    E+   ++++ +          +AL +ACS G  EI E L+  
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
              VN +D  G +PLH AAS G   +VK LL +     VN  +  G TPLHYA  + R  
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
            A +L+  GA  D ++    T +
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAM 143

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  113 bits (285), Expect = 1e-31
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G +++V  LL   + V+  +    TPL  AA+  + EI  +L+  GA+ +AK  
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
              +A+  A +KG  ++  +L+   A+ NIQD  G TPLH A  +      K L+TQ   
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--G 195

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
             + I +    TPL  A     L      +  G    +
Sbjct: 196 ASIYIENKEEKTPLQVAKGGLGL--ILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.4 bits (232), Expect = 8e-24
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N    +H+AA   R ++   LL+  +  D KD  + T +  AAA G L++V +L+   A 
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
            N +   G++ L  AC +   E A+ L+   A++ I++    TPL  A   G   ++   
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

Query: 121 LTQRLDIDV 129
           L +  +  +
Sbjct: 223 LAEGEEASM 231

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  140 bits (356), Expect = 3e-43
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
            +    T L +A+  G +  V  L+ NG+D N K   G + L  AC+ G  ++ ELL+ +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
            A VN    +  +PLH AA  G   +VKLLL+       N  + +G  P+ Y  +E   +
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKS 123

Query: 151 DAKLLVRCGA 160
              L  +  +
Sbjct: 124 LLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  134 bits (339), Expect = 7e-41
 Identities = 34/115 (29%), Positives = 55/115 (47%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H A++ G    V++LL+N S  + KD    TPL  A   G L++V LL+ + A VN    
Sbjct: 15  HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
              S L  A   G  +I +LL+   A+ N  ++ G  P+     + +  ++ L  
Sbjct: 75  QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  114 bits (288), Expect = 5e-33
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
           G D      G  + L  A  KG     E L+ N ++ N++D  G TPLH A + G   VV
Sbjct: 1   GIDPFTNHRG-ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +LLL       VN T    ++PLH A +   +   KLL+  GA  +  N     P+D 
Sbjct: 60  ELLLQH--KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 3e-28
 Identities = 29/87 (33%), Positives = 44/87 (50%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H A   G   VV+ LL++K+ V+     N +PL  AA  G ++IV+LL+S GA  NA   
Sbjct: 48  HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

Query: 67  GGHSALQYACSKGWKEIAELLIHNHAN 93
            G   + Y   +  K +  L   N ++
Sbjct: 108 FGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.8 bits (141), Expect = 3e-11
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
           H AA +G  D+V  LL   +  +  +     P+          ++ L   N +   +
Sbjct: 81  HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  139 bits (354), Expect = 7e-43
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
                + +   L  AAA G++E VR L+  GA+ NA    G   +Q     G   +AELL
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELL 63

Query: 88  IHNHANVNIQDVRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
           + + A  N  D    T P+H AA +G    + +L        +++ DA+G  P+  A E 
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG--ARLDVRDAWGRLPVDLAEEL 121

Query: 147 KRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
                A+ L                   +
Sbjct: 122 GHRDVARYLRAAAG-----GTRGSNHARI 145

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  131 bits (331), Expect = 3e-39
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA- 65
             AA  GR + V  LL+  +  +  +   R P+ +    G   +  LL+ +GA+ N    
Sbjct: 17  ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCADP 75

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
                 +  A  +G+ +   +L    A ++++D  G  P+  A   G   V + L     
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135

Query: 126 DIDVNITDAYGNTPLHYACEE 146
                     G+        E
Sbjct: 136 GTR-------GSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  105 bits (265), Expect = 2e-29
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRT-PLILAAAAGKLEIVRLLISNGADVNAK 64
           I    + G   V + LL + +  +  D    T P+  AA  G L+ + +L   GA ++ +
Sbjct: 49  IQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR 107

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
              G   +  A   G +++A  L             G+      A++G
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  102 bits (256), Expect = 4e-28
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 59  ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
               +  +     L  A ++G  E    L+   AN N  +  G  P+      G   V +
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARVAE 61

Query: 119 LLLTQRLDIDVNITDAYGNT-PLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           LLL      + N  D    T P+H A  E  L    +L R GARLD+++   + P+DL
Sbjct: 62  LLLLHGA--EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  139 bits (352), Expect = 1e-42
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
           +     ++   L  AAA G++E VR L+  GAD NA    G   +Q     G  ++AELL
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELL 63

Query: 88  IHNHANVNIQDVRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
           + + A  N  D    T P+H AA +G    + +L        +++ DA+G  P+  A E+
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQ 121

Query: 147 KRLTDAKLLVRCGA 160
                A+ L     
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  126 bits (318), Expect = 1e-37
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA- 65
             AA  G+ + V  LL+  +  +  +   R P+ +    G  ++  LL+ +GA+ N    
Sbjct: 17  ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCADP 75

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
                 +  A  +G+ +   +L    A +++ D  G  P+  A  QG   + + L   
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  111 bits (281), Expect = 5e-32
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
              ++       + L  A ++G  E    L+   A+ N  +  G  P+      G   V 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ-VMMMGSAQVA 60

Query: 118 KLLLTQRLDIDVNITDAYGNT-PLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +LLL      + N  D    T P+H A  E  L    +L R GARLD+ +   + P+DL
Sbjct: 61  ELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.0 bits (227), Expect = 5e-24
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRT-PLILAAAAGKLEIVRLLISNGADVNAK 64
           I      G   V + LL + +  +  D    T P+  AA  G L+ + +L   GA ++  
Sbjct: 49  IQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHAN 93
              G   +  A  +G ++IA  L     +
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  138 bits (351), Expect = 1e-42
 Identities = 61/125 (48%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 36  RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
           RTPL LAA  G LE+V+LL+  GADVNAK   G + L  A   G  E+ +LL+   A+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 96  IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
            +D  G TPLH AA  G   VVKLLL      DVN  D  G TPLH A     L   KLL
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 156 VRCGA 160
           +  GA
Sbjct: 121 LEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  133 bits (337), Expect = 1e-40
 Identities = 56/115 (48%), Positives = 70/115 (60%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G  +VV  LL+  + V+ KD   RTPL LAA  G LE+V+LL+  GADVNAK  
Sbjct: 7   HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
            G + L  A   G  E+ +LL+   A+VN +D  G TPLH AA  G   VVKLLL
Sbjct: 67  NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (256), Expect = 2e-28
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
           G + L  A   G  E+ +LL+   A+VN +D  G TPLH AA  G   VVKLLL      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--A 59

Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           DVN  D  G TPLH A     L   KLL+  GA ++ ++K  +TPL
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.0 bits (248), Expect = 4e-27
 Identities = 39/86 (45%), Positives = 51/86 (59%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G  +VV  LL+  + V+ KD   RTPL LAA  G LE+V+LL+  GADVNAK  
Sbjct: 40  HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

Query: 67  GGHSALQYACSKGWKEIAELLIHNHA 92
            G + L  A   G  E+ +LL+   A
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  141 bits (359), Expect = 1e-42
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 7/168 (4%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
              +        G            + V  +     TP   AA     + +  L+    D
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLLE-DRD 69

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKL 119
           V+A  + G +AL +    G  +   LL    A+++ +D+R G T LH AA      VV+ 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
           L+      D+ + D  G T L  A E  + T     ++ G R+ ++  
Sbjct: 130 LVEL--GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 175

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  140 bits (354), Expect = 1e-41
 Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-A 65
             AA    E  +  LL+++  VD  D+  RT L+  A  G  + VRLL   GAD++ +  
Sbjct: 50  WTAARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
            GG +AL  A      E+ E L+   A++ ++D RG T L  A     T      +    
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168

Query: 126 DI--------------------DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
            I                    ++      G    +    +       +     A  +  
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA--EDV 226

Query: 166 NKEKKTPL 173
            K+ +  L
Sbjct: 227 AKDYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  129 bits (326), Expect = 1e-37
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
                    ++    G            ADV ++     +    A  K  ++    L+  
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE- 66

Query: 91  HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRL 149
             +V+  D  G T L   A  G    V+LL       D++  D   G T LH A    R 
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRP 124

Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
              + LV  GA ++++++   T L+L
Sbjct: 125 EVVEALVELGADIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 62  NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           +  A  G          G         +  A+V        TP   AA +     +  LL
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL 65

Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE-KKTPL 173
               D DV+  D  G T L +          +LL   GA LD ++     T L
Sbjct: 66  E---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 6/85 (7%)

Query: 89  HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR 148
            N    +     GA         G +P          D+      +   TP   A  +  
Sbjct: 3   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPWWTAARKAD 57

Query: 149 LTDAKLLVRCGARLDIQNKEKKTPL 173
                 L+     +D  ++  +T L
Sbjct: 58  EQALSQLLE-DRDVDAVDENGRTAL 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  133 bits (338), Expect = 1e-39
 Identities = 43/205 (20%), Positives = 68/205 (33%), Gaps = 37/205 (18%)

Query: 7   HWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV---- 61
             AA     + +   L      V  +     T L +AA    LE   +L+    ++    
Sbjct: 8   LLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP 67

Query: 62  -NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-------------VRGATPLHR 107
             ++   G +AL  A       +   L+   A+V+ +                G  PL  
Sbjct: 68  MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127

Query: 108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA----KLLVRCGA--- 160
           AA  G   +V+LL+      D+   D+ GNT LH    +   T A     LL+       
Sbjct: 128 AACVGSEEIVRLLIEH--GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185

Query: 161 ---RLDIQNKEKKTPLDLLPLPHLA 182
                 + N +  TP        LA
Sbjct: 186 LKSLELVPNNQGLTPF------KLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  120 bits (304), Expect = 2e-34
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 23/163 (14%)

Query: 37  TPLILAAAAGKLEIV-RLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV- 94
           +PL+LAA    ++ + +LL   G +V+ +   G +AL  A      E A +L+     + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 95  ----NIQDVRGATPLHRAASQGITPVVKLLLTQRLDID-----------VNITDAYGNTP 139
                 +   G T LH A       +V+ LL +   +             +    YG  P
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
           L +A         +LL+  GA +  Q+    T L      H+ 
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL------HIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
             +PL  AA +     +  LL      +V+   A G T LH A     L  A +L+    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 161 -----RLDIQNKEKKTPLDLLPLPHLA 182
                 +  +  E +T L      H+A
Sbjct: 62  ELVFEPMTSELYEGQTAL------HIA 82

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  140 bits (355), Expect = 4e-42
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AAL+G  +VV   +K  +     ++   T L  A       IV  LI+ GA+VN+   
Sbjct: 26  LDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS 85

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAAS--QGITPVVKLLLTQ 123
            G + L  A S     I   L+ + A +    +  GAT   +     +G       L   
Sbjct: 86  HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI--QNKEKKTPL 173
             +  + + ++     L     E      +L  R G  + +  ++  ++T  
Sbjct: 146 --EQSMGLMNSGAVYALWDYSAE---FGDELSFREGESVTVLRRDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  135 bits (342), Expect = 4e-40
 Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 18  VDFLLKNKSPVDPKDD---TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQY 74
           +  +L+                  L+ AA  G+LE+V+  +    D +   + G +AL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           A       I + LI   ANVN  D  G TPLH AAS   T +   L+     I    T +
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLS 119

Query: 135 YGNTPLHYA--CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
            G T         E     A  L      + + N      L
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  129 bits (327), Expect = 7e-38
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-A 65
           H A       +VDFL+   + V+  D    TPL  AA+     I   L+ +GA + A   
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 66  DGGHSALQYA--CSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
             G +A +      +G+ + A  L     ++ + +      L    S      +     +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW-DYSAEFGDELSFREGE 177

Query: 124 RLDIDVNITDAYGNTPLHYACEEKRL-TDAKLLVRCGARLDIQNKEKKTPL 173
              + V   D    T   +A    +     +       R+  Q  + K   
Sbjct: 178 --SVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHH 226

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 4/103 (3%)

Query: 7   HWAALS--GREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
                   G  D   +L   +  +   +      L    +A   + +         V  +
Sbjct: 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW-DYSAEFGDELSFREGESVTVLRR 184

Query: 65  ADGGHSALQYACSKGWKEI-AELLIHNHANVNIQDVRGATPLH 106
                +   +A   G +             V  Q  +     H
Sbjct: 185 DGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  139 bits (351), Expect = 5e-42
 Identities = 25/179 (13%), Positives = 66/179 (36%), Gaps = 20/179 (11%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAA-----AGKLEIVRLLISNGAD 60
           +  AA+ G  +    L +     + K+   ++ ++           + +I   LI+ GAD
Sbjct: 10  VSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 61  VNAKADGGHSALQYACSKGWK------EIAELLIHNHANVNIQDVRGATPLHRAASQG-- 112
           + ++   G +        G        E+ ++ +   A++          + +       
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 113 ----ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
               + P+ KL+ +Q   + + I D +G T L +    ++    K++     + +++  
Sbjct: 128 DENEMIPLYKLIFSQS-GLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  124 bits (314), Expect = 2e-36
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 34  TNRTPLILAAAAGKLEIVRLLISNGADVNAKADG---GHSALQYACSKGWKEIAELLIHN 90
           +    +  AA  G  E    L   G +           +  L+    +   +I+  LI+ 
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 91  HANVNIQDVRGATPLHRAASQG------ITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC 144
            A++  +   G T        G       T + K+ L +    D+          +    
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG--ADITALYKPYKIVVFKNI 122

Query: 145 EEKRLTDAK-------LLVRCGARLDIQNKEKKTPLDL 175
               + + +       +  + G +L I++K   T L+ 
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 11/120 (9%)

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR---GATPLHRAASQGITPVVKL 119
           + A   +  +  A   G  E    L           ++       L     +    +   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEE------KRLTDAKLLVRCGARLDIQNKEKKTPL 173
           L+ +    D+      G T      +             K+ +  GA +    K  K  +
Sbjct: 61  LINK--GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  132 bits (334), Expect = 5e-40
 Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
             L+ AA AG+ + VR+L++NGADVNAK + G + L  A + G  EI E+L+ N A+VN 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
            D  G TPLH AA  G   + ++LL      DVN  D +G T    +        A++L
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  128 bits (324), Expect = 2e-38
 Identities = 47/115 (40%), Positives = 65/115 (56%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA +G++D V  L+ N + V+ KD+   TPL LA A G LEIV +L+ NGADVNA   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA 78

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
            G + L  A   G  EIAE+L+ + A+VN QD  G T    +   G   + ++L 
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  106 bits (268), Expect = 5e-30
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 54  LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
              +G+D+  K       L  A   G  +   +L+ N A+VN +D  G TPL+ A + G 
Sbjct: 7   HHHHGSDLGKK-------LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59

Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             +V++LL      DVN  DA G TPLH A     L  A++L++ GA ++ Q+K  KT  
Sbjct: 60  LEIVEVLLKN--GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.4 bits (127), Expect = 3e-09
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
           H AA  G  ++ + LLK+ + V+ +D   +T   ++   G  ++  +L  
Sbjct: 85  HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  130 bits (329), Expect = 2e-39
 Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 30  PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIH 89
           P         + A   G L+ V+  ++ G DVN   +GG   L YA   G  EI E L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 90  NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
             A++N  D    TPL  A  +G    VKLLL++    D  +    G T       +
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK--GADKTVKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  127 bits (323), Expect = 2e-38
 Identities = 31/112 (27%), Positives = 50/112 (44%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
            WA  +G  D V   +     V+   +  R PL  AA  G+LEI+  L+  GAD+NA   
Sbjct: 12  MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
              + L  A  +G     +LL+   A+  ++   G T      +Q I  +++
Sbjct: 72  HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 133 DAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
            +  +    +A +   L + K  V  G  ++   +  + PL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL 44

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  129 bits (326), Expect = 5e-39
 Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 29  DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
                   TPL  AA  G  E V+ L+S GADVNA++  G++ L  A   G  EI +LL+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 89  HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHY 142
              A+VN +   G TP H A   G   +VKLL  +    DVN      +   H+
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK--GADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  118 bits (299), Expect = 5e-35
 Identities = 37/100 (37%), Positives = 53/100 (53%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G  + V  LL   + V+ +     TPL LAA  G  EIV+LL++ GADVNA++ 
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLH 106
            G++    A   G  EI +LL    A+VN +    +   H
Sbjct: 74  DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  105 bits (265), Expect = 7e-30
 Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
           G    +K   G++ L  A   G  E  + L+   A+VN +   G TPLH AA  G   +V
Sbjct: 1   GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
           KLLL +    DVN     GNTP H A +       KLL   GA ++ ++       
Sbjct: 59  KLLLAK--GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.3 bits (197), Expect = 8e-20
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA +G  ++V  LL   + V+ +     TP  LA   G  EIV+LL + GADVNA++ 
Sbjct: 47  HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106

Query: 67  GGHSALQY 74
           G      +
Sbjct: 107 GSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.9 bits (170), Expect = 9e-16
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
                 G TPLH AA  G    VK LL++    DVN     GNTPLH A +       KL
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 155 LVRCGARLDIQNKEKKTPLDLLPLPHLA 182
           L+  GA ++ ++K+  TP       HLA
Sbjct: 61  LLAKGADVNARSKDGNTPE------HLA 82

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  114 bits (288), Expect = 8e-32
 Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 7   HWAAL---SGREDVVDFLLKN-----------KSPVDPKDDTNRTPLILAAAAGKLEIVR 52
             A L   +GR D +  LL              SP        +T L +A        V 
Sbjct: 51  PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE 110

Query: 53  LLISNGADVNAKADG--------------GHSALQYACSKGWKEIAELLI---HNHANVN 95
           LL+  GADV+A+A G              G   L  A       I   L    H  A++ 
Sbjct: 111 LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR 170

Query: 96  IQDVRGATPLHRAASQG---------ITPVVKLLLTQRLDID-----VNITDAYGNTPLH 141
            QD RG T LH   +           +T +  LLL +   +        + +  G +PL 
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230

Query: 142 YACEEKRLTDAKLLVRCGA 160
            A +  ++   + ++R   
Sbjct: 231 MAAKTGKIGIFQHIIRREI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 87.9 bits (218), Expect = 1e-21
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 37/176 (21%)

Query: 35  NRTPLILAAAAGKLE----IVRLLISNGADVNAK----ADGGHSALQYA---CSKGWKEI 83
           NR  L    + G  +    ++  L+++   +  +       G + L  A    S G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 84  AELLIHN-----------HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI----- 127
             +L+             ++       RG T LH A  +     V+LL+ +  D+     
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 128 -------DVNITDAYGNTPLHYACEEKRLTDAKLLVRCG---ARLDIQNKEKKTPL 173
                  D      +G  PL  A    +      L   G   A L  Q+    T L
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 19/108 (17%)

Query: 7   HWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGK---------LEIVRLL 54
             AA + +  +V +L +N      +  +D    T L    A             ++  LL
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 55  ISNGADVNAKADG-------GHSALQYACSKGWKEIAELLIHNHANVN 95
           +   A +    +        G S L  A   G   I + +I       
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 16  DVVDFLLKNKSPVDPK-------DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
            + D LL   + + P        ++   +PL++AA  GK+ I + +I       A     
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

Query: 69  H 69
           H
Sbjct: 259 H 259

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  108 bits (274), Expect = 1e-31
 Identities = 45/88 (51%), Positives = 54/88 (61%)

Query: 36  RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
           RTPL LAA  G LE+V+LL+  GADVNAK   G + L  A   G  E+ +LL+   A+VN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 96  IQDVRGATPLHRAASQGITPVVKLLLTQ 123
            +D  G TPLH AA  G   VVKLLL  
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 99.0 bits (248), Expect = 1e-27
 Identities = 39/86 (45%), Positives = 51/86 (59%)

Query: 7  HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
          H AA +G  +VV  LL+  + V+ KD   RTPL LAA  G LE+V+LL+  GADVNAK  
Sbjct: 7  HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66

Query: 67 GGHSALQYACSKGWKEIAELLIHNHA 92
           G + L  A   G  E+ +LL+   A
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.3 bits (223), Expect = 7e-24
 Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 68  GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
           G + L  A   G  E+ +LL+   A+VN +D  G TPLH AA  G   VVKLLL      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--A 59

Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           DVN  D  G TPLH A     L   KLL+  GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.2 bits (168), Expect = 1e-15
 Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
           G TPLH AA  G   VVKLLL      DVN  D  G TPLH A     L   KLL+  GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 161 RLDIQNKEKKTPL 173
            ++ ++K  +TPL
Sbjct: 60  DVNAKDKNGRTPL 72

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  113 bits (284), Expect = 2e-31
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 48/200 (24%)

Query: 7   HWAALS---GREDVVDFLLK-----------NKSPVDPKDDTNRTPLILAAAAGKLEIVR 52
             A L+   G    +  LL+             +    +     + L +A     L+ V+
Sbjct: 48  MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107

Query: 53  LLISNGADVNAKADG-------------GHSALQYACSKGWKEIAELLI---HNHANVNI 96
           LL+ NGADV+ +A G             G   L  A      ++   L+   H  A++  
Sbjct: 108 LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167

Query: 97  QDVRGATPLH----------------RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
            D  G T LH                     G+  +   L          I++  G TPL
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT--VQLEEISNHQGLTPL 225

Query: 141 HYACEEKRLTDAKLLVRCGA 160
             A +E ++   + +++   
Sbjct: 226 KLAAKEGKIEIFRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  109 bits (275), Expect = 7e-30
 Identities = 45/216 (20%), Positives = 67/216 (31%), Gaps = 54/216 (25%)

Query: 15  EDVVDFLLKNK----SPVDPKDDTNRTPLILAAAA---GKLEIVRLLISNG--------- 58
             ++++L  N          +  T +T L+ A      G    +  L+            
Sbjct: 19  TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78

Query: 59  --ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-------------VRGAT 103
             A    +   GHSAL  A  K   +  +LL+ N A+V+++                G  
Sbjct: 79  VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138

Query: 104 PLHRAASQGITPVVKLLLTQRLDI-DVNITDAYGNTPLHYACEEKRLTD----------- 151
           PL  AA      VV  LL        +  TD+ GNT LH        +            
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 152 -----AKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
                   L       +I N +  TPL       LA
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPL------KLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (257), Expect = 3e-27
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 33/162 (20%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTN-------------RTPLILAAAAGKLEIVRL 53
           H A        V  L++N + V  +                   PL LAA   + ++V  
Sbjct: 95  HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

Query: 54  LISNG---ADVNAKADGGH----------------SALQYACSKGWKEIAELLIHNHANV 94
           L+ N    A + A    G+                SAL      G  ++   L       
Sbjct: 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214

Query: 95  NIQDVRGATPLHRAASQGITPVVKLLLTQRLDI-DVNITDAY 135
            I + +G TPL  AA +G   + + +L +       +    +
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 37/152 (24%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
           +R  L    + G  E +  L                 L+Y                  + 
Sbjct: 2   DRDRLFSVVSRGVPEELTGL-----------------LEYLRWNSKYLTD--------SA 36

Query: 95  NIQDVRGATPLHRAA---SQGITPVVKLLL---------TQRLDIDVNITDAYGNTPLHY 142
             +   G T L +A      G+   +  LL            ++         G++ LH 
Sbjct: 37  YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96

Query: 143 ACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
           A E++ L   KLLV  GA + ++   +     
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKH 128

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  108 bits (273), Expect = 4e-31
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
            +          L+   S +          L+ AA AG+ + VR+L++NGADV AK   G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDL---GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 69  HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
            + L  A   G  E+ +LL+   A+V  QD  G T    +   G   + ++L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  104 bits (263), Expect = 1e-29
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 42  AAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRG 101
            ++         L+  G+ + +        L  A   G  +   +L+ N A+V  +D  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 102 ATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
           +TPLH AA  G   VVKLLL      DV   D +G T    + +      A++L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.1 bits (214), Expect = 2e-22
 Identities = 33/81 (40%), Positives = 48/81 (59%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA +G++D V  L+ N + V  KD    TPL LAA  G LE+V+LL+  GADV A+  
Sbjct: 29  LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

Query: 67  GGHSALQYACSKGWKEIAELL 87
            G +A   +   G +++AE+L
Sbjct: 89  FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 83.0 bits (206), Expect = 3e-21
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 75  ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
             S      +  L+   +++          L  AA  G    V++L+      DV   D 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDK 55

Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            G+TPLH A     L   KLL+  GA +  Q+K  KT  D+
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (279), Expect = 2e-30
 Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 58/221 (26%)

Query: 7   HWAALS---GREDVVDFLLKNKSPVDP-----------KDDTNRTPLILAAAAGKLEIVR 52
             A L+   G+ D +  LL      D                 +T L +A     + +V 
Sbjct: 59  LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

Query: 53  LLISNGADVNAKADG--------------GHSALQYACSKGWKEIAELLI---HNHANVN 95
           LL+ NGADV A A+G              G   L  A       I + L+      A+++
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 96  IQDVRGATPLHRAASQG---------ITPVVKLLLTQRLDI-----DVNITDAYGNTPLH 141
            +D  G T LH               +T +   +L     +        IT+  G TPL 
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 142 YACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
            A    ++     +++       +   +          H A
Sbjct: 239 LAASSGKIGVLAYILQ-------REIHEPECR------HAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  106 bits (266), Expect = 2e-28
 Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 42/173 (24%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTN--------------RTPLILAAAAGKLEIVR 52
           H A       +V  L++N + V    + +                PL LAA   +L IV+
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 53  LLISNG---ADVNAKADGGHSALQYACSKGWKEIAE----------------LLIHNHAN 93
            L+ N    AD++A+   G++ L          +                   L      
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 94  VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
             I + +G TPL  AAS G   V+  +L +         + +     H A   
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR---------EIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 95.6 bits (238), Expect = 3e-24
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 37/185 (20%)

Query: 29  DPKDDTNRTPLILAAAAGK-------LEIVRLLISNGADVNAK-ADGGHSALQYA---CS 77
            P    +R  +  A A          L  ++       D   K  + G + L  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 78  KGWKEIAELLIHN-----------HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G  +   LL+             +A+      +G T LH A  +    +V LL+    D
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 127 ID------------VNITDAYGNTPLHYACEEKRLTDAKLLVRCG---ARLDIQNKEKKT 171
           +                   +G  PL  A    +L   K L++     A +  ++    T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 172 PLDLL 176
            L  L
Sbjct: 187 VLHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 26/125 (20%)

Query: 7   HWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGK---------------- 47
             AA + +  +V FLL+N      +  +D    T L                        
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212

Query: 48  LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
           L +   L             G + L  A S G   +   ++    +            H 
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 108 AASQG 112
           AA   
Sbjct: 266 AAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 20/138 (14%)

Query: 56  SNGADVNAKADGGHSALQYACSKGWKEIAELLIH-------NHANVNIQDV-RGATPLHR 107
           S  A           ++  A ++   +  E L+           +   +D   G T L +
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 108 A---ASQGITPVVKLLLTQRLDID---------VNITDAYGNTPLHYACEEKRLTDAKLL 155
           A      G    + LLL      D            +   G T LH A E + +T   LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 156 VRCGARLDIQNKEKKTPL 173
           V  GA +           
Sbjct: 121 VENGADVQAAANGDFFKK 138

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 7/78 (8%)

Query: 2   ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
           +      +  +    +   L       +  +    TPL LAA++GK+ ++  ++      
Sbjct: 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH- 258

Query: 62  NAKADGGHSALQYACSKG 79
                        A    
Sbjct: 259 ------EPECRHAAAHHH 270

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  110 bits (276), Expect = 1e-29
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 18/187 (9%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG----KLEIVRLLISNGADVN 62
           HW       ++V  L+K+ S     D+   + L+ A  +           LL      + 
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195

Query: 63  AKADGGHSALQYACSKGWKE------------IAELLIHNHANVNIQDVRGATPLHRAAS 110
            +     + L +                    +   ++                     +
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255

Query: 111 QGITPVVKLLLTQRLDI--DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
                 +   L  +  I   +N  D+ G+T L+ A     ++    L+  GA   I NK 
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 315

Query: 169 KKTPLDL 175
              P+D 
Sbjct: 316 GLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  105 bits (262), Expect = 1e-27
 Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 18/201 (8%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKL-EIVRLLISNGADVNA 63
            +        +++   L  + S  + +  ++       +    L E+     +   ++N 
Sbjct: 66  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125

Query: 64  KADG-GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG---ITPVVKL 119
             D  G++ L +  S    E+ + L+ + +N    D  G + L +A        +   + 
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTD------------AKLLVRCGARLDIQNK 167
           LL   L   + + D+   T LH+      +T                +V+   R      
Sbjct: 186 LL-DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 168 EKKTPLDLLPLPHLAQALTEI 188
            +K             ++ E 
Sbjct: 245 NEKESKPNDKNGERKDSILEN 265

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  101 bits (252), Expect = 4e-26
 Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 25/195 (12%)

Query: 7   HWAALSGREDVVDFLLKNKSPVD-PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           H +  S  ++V D     +  ++ P D+   TPL    +   LE+V+ L+ +G++     
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161

Query: 66  DGGHSALQYACSKG----WKEIAELLIHNHANVNIQDVRGATPLHRAA-----------S 110
           + G S L  A              LL + +  + ++D    T LH              +
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 221

Query: 111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL---VRCGARLDIQNK 167
           +    ++   + ++ +  +        +  +    E++ +  + L         L+ Q+ 
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 168 EKKTPLDLLPLPHLA 182
              T L      ++A
Sbjct: 282 NGDTCL------NIA 290

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.1 bits (171), Expect = 1e-14
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 9   AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK----LEIVRLLISNGADVNAK 64
           AA    + ++ +++K ++         +          +    LE + L       +NA+
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA 109
              G + L  A   G   I + L+   A+  I +  G  P+   A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.7 bits (144), Expect = 5e-11
 Identities = 14/69 (20%), Positives = 26/69 (37%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           +        + +D      + ++ +D    T L +AA  G + IV  L+  GAD      
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

Query: 67  GGHSALQYA 75
            G   + + 
Sbjct: 315 SGLRPVDFG 323

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  100 bits (251), Expect = 1e-25
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 6/170 (3%)

Query: 26  SPVDPKDDTNRTPLILAAAAGK---LEIVRLLISNGADVNAKADGGHSALQYACSKGWKE 82
           S    K   +     +AA  G    L+ + LL+++   V       + A + A   G   
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 83  IAELLIHNHANVNIQDVR--GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
           +   L        +  ++         AA  G   V+  L          +  A      
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202

Query: 141 HYACEEK-RLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE 189
            +A   +        L+ C   L      +    +    P +A+ +  ++
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 30/201 (14%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDT--NRTPLILAAAAGKLEIVRLLISNGADVNA 63
              AA +G   V++ L +             N     LAA  G L ++  L         
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 64  K---ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
               A+  ++    A  +G   +   L+     +   ++       +  +  I   V  L
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 121 LTQR-----------LDIDVNITDAYGNTPLHYACEEKRLTDAKLL--------VRCGAR 161
                           D+        G   L              +        ++  A 
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 162 LDIQNKEKKTPLDLLPLPHLA 182
                 +    L       LA
Sbjct: 312 TATIPGDANELL------RLA 326

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 24/198 (12%), Positives = 46/198 (23%), Gaps = 28/198 (14%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKD--DTNRTPLILAAAA-GKLEIVRLLISNGADVN 62
              AA +G   V++ L +             N      AA   G   ++  L+     + 
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNI-------------QDVRGATPLHRAA 109
                     +   +         L   H    +             + ++G   L    
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286

Query: 110 SQGITPVVKLL------LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
            +    ++  +         +            N  L  A          LL+   + L 
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346

Query: 164 IQNK------EKKTPLDL 175
           +         E    LDL
Sbjct: 347 LTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 79.2 bits (195), Expect = 8e-18
 Identities = 23/162 (14%), Positives = 41/162 (25%), Gaps = 9/162 (5%)

Query: 15  EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD-GGHSALQ 73
           ++ +   L        K+      L+    A      + L S+      K++     A  
Sbjct: 47  KEAIHIFLPGT-----KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 101

Query: 74  YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
             CS    +   LL+ +   V +           AA  G   V+  L        + +  
Sbjct: 102 TGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 160

Query: 134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK--TPL 173
           A        A E   L     L            + +     
Sbjct: 161 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.0 bits (145), Expect = 5e-11
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 20/124 (16%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK---LEIVRLLIS-----N 57
              +   G  D+V            +       L           L+ +R L+S      
Sbjct: 258 FKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308

Query: 58  GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
            A         +  L+ A   G +    LL+   + + +     A   +   + G   + 
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLR 365

Query: 118 KLLL 121
            + L
Sbjct: 366 AVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.2 bits (143), Expect = 9e-11
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 4   LLIHWAALSGREDVVDFL--------LKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI 55
            ++        E ++D +        +K  +P           L LA   G      LL+
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 56  SNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
           S  + +               + G  ++  + + +H + +
Sbjct: 340 SIPSVLALTKANN---YYINETGGRLDLRAVALEHHHHHH 376

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 78.9 bits (194), Expect = 4e-18
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 27  PVDPKDDTNRTPLILAAAAGK---LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI 83
           P+    + + T L LA  +     L IV  L+ N  +++ +   G +AL Y C     E 
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 84  AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
            +LL+   A++ I +  G TPL  A         +LL 
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.4 bits (185), Expect = 9e-17
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 19  DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK------ADGGHSAL 72
            +  K  +    K  +       A     +  +    ++G D+  K       +   +AL
Sbjct: 118 RYARKKHADTAAKLHSLCE----AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173

Query: 73  QYACSKG---WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
             A          I + L+ N  N++ Q  +G+T LH          +KLLL  +  I  
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-- 231

Query: 130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGAR 161
            I +  G TPL  A   K     +LL +  + 
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 3   RLLIHWAALSGRED---VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
              +H A  S       +VDFL++N   +D +     T L         E ++LL+   A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIH-------NHANVNIQ 97
            +    + G + L  A     +   ELL         +H +V  +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.8 bits (160), Expect = 2e-13
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 22  LKNKSPVDPKDDTNRTPL---ILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK 78
           L ++ PV P   ++       I A    +    +      A +++  +   +   +   +
Sbjct: 89  LPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQ 148

Query: 79  GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL--LLTQRLDIDVNITDAYG 136
            + +  +L          +     T LH A        + +   L Q    +++     G
Sbjct: 149 AYADGVDLTEKIPLANGHEPDE--TALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKG 205

Query: 137 NTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
           +T LHY C        KLL+R  A ++I N+  +TPLD+
Sbjct: 206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 77.1 bits (189), Expect = 5e-17
 Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 42  AAAAGKLEIVRLLISNGADVNAKADG--GHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
           +     L  +   +++GADVN    G    + L  A +       E L+ N ANVN  D 
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266

Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
            G  PLH A   G T +  L L +    D+   D+ G  PL  A E        LL    
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMETANADIVTLLRLAK 324

Query: 160 AR 161
            R
Sbjct: 325 MR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 74.8 bits (183), Expect = 2e-16
 Identities = 30/90 (33%), Positives = 39/90 (43%)

Query: 32  DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
              N TPLI A AA  L     L+ NGA+VN     G   L +A   G   +A L +   
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291

Query: 92  ANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           A++  +D  G  PL  A       +V LL 
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.8 bits (157), Expect = 8e-13
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 98  DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
               ATPL +A +       + LL  +   +VN  D+ G  PLH+A        A L ++
Sbjct: 232 GQDNATPLIQATAANSLLACEFLL--QNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 158 CGARLDIQNKEKKTPLDL 175
            GA L  ++ E + PL +
Sbjct: 290 RGADLGARDSEGRDPLTI 307

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.8 bits (157), Expect = 8e-13
 Identities = 23/91 (25%), Positives = 34/91 (37%)

Query: 3   RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
              +  A  +      +FLL+N + V+  D   R PL  A   G   +  L +  GAD+ 
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHAN 93
           A+   G   L  A      +I  LL      
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H A + G   +    LK  + +  +D   R PL +A      +IV LL          A
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331

Query: 66  DG 67
            G
Sbjct: 332 QG 333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 75.0 bits (184), Expect = 1e-16
 Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 30  PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG------GHSALQYACSKGWK-- 81
            +       L  A     L  V    +NG D      G          L  A     +  
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 82  -EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
             + + +I N  +++ +   G T LH AA       +KLLL  R    V   +  G T L
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR--ALVGTVNEAGETAL 263

Query: 141 HYACEEKRLTDAKLL 155
             A ++      +LL
Sbjct: 264 DIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.7 bits (178), Expect = 9e-16
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 24  NKSPVDPKDDTN-RTPLILAAAAGK---LEIVRLLISNGADVNAKADGGHSALQYACSKG 79
            +    P         L LA        L +V  +I NG  ++AKA  G++AL YA    
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237

Query: 80  WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
             +  +LL+   A V   +  G T L  A  +      +LL
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 3   RLLIHWAALSGRED---VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
            L++H A     +    +VDF+++N   +D K     T L  AA   + + ++LL+   A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250

Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLI-------HNHANVNIQ 97
            V    + G +AL  A  K  KE  ELL            +V+  
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS 295

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 101 GATPLHRA---ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
               LH A   A+Q   P+V  ++       ++   A GNT LHYA    +    KLL++
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNG--GHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 158 CGARLDIQNKEKKTPLDL 175
             A +   N+  +T LD+
Sbjct: 248 GRALVGTVNEAGETALDI 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	100.0
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.98
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.97
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.96
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.96
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.96
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.4e-44  Score=248.51  Aligned_cols=196  Identities=26%  Similarity=0.315  Sum_probs=188.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+. +++..+..|.||||+|+..+
T Consensus        24 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  103 (223)
T 2f8y_A           24 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  103 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Confidence            58999999999999999999999999999999999999999999999999999999987 78888999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      +.+++++|++.|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|
T Consensus       104 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  181 (223)
T 2f8y_A          104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHF  181 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998  6688899999999999999999999999999999


Q ss_pred             CCcceecCCCCCccccCCChhHHHHHhhhcccccCCCCC
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPED  198 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~~  198 (198)
                      ++++.++..|.||+++|+..++.+++++|.+++...+++
T Consensus       182 a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          182 ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC-
T ss_pred             CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcccc
Confidence            999999999999999999999999999999999887653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.4e-44  Score=249.40  Aligned_cols=193  Identities=41%  Similarity=0.599  Sum_probs=184.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||.|+..++
T Consensus        39 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  118 (231)
T 3aji_A           39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR  118 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|++.|++++..+..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+..++.+++++|+++|+
T Consensus       119 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  196 (231)
T 3aji_A          119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY--KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA  196 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999998  66888899999999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcccccCC
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDL  195 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~  195 (198)
                      +++.+|..|.||+++|...+..++++.|...++++
T Consensus       197 ~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          197 SIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999999999999999999999999998877653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.7e-44  Score=254.64  Aligned_cols=195  Identities=26%  Similarity=0.320  Sum_probs=182.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++. +++.++..|.||||+|+..+
T Consensus        56 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  135 (253)
T 1yyh_A           56 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  135 (253)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcC
Confidence            48999999999999999999999999999999999999999999999999999999987 88889999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++  |.+++..+..|.||||+|+..++.+++++|+++|
T Consensus       136 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             CSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998  6688899999999999999999999999999999


Q ss_pred             CCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      ++++.+|..|.||+++|+..++.++++++.....+.++
T Consensus       214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~~~  251 (253)
T 1yyh_A          214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH  251 (253)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-------
T ss_pred             CCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhccc
Confidence            99999999999999999999999999999988877664

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.1e-44  Score=258.59  Aligned_cols=195  Identities=29%  Similarity=0.384  Sum_probs=183.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACS   77 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~---~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~   77 (198)
                      +|+||||+|+..|+.+++++|++.|.+   ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~   87 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            589999999999999999999999987   78889999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCC-----------------------------------------------CCcCCCCCCcHHHHHHh
Q psy14007         78 KGWKEIAELLIHNHAN-----------------------------------------------VNIQDVRGATPLHRAAS  110 (198)
Q Consensus        78 ~~~~~~~~~l~~~~~~-----------------------------------------------~~~~~~~~~~~l~~a~~  110 (198)
                      .++.+++++|++.++.                                               ++..+..|.||||+|+.
T Consensus        88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  167 (282)
T 1oy3_D           88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (282)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHH
Confidence            9999999999998765                                               56677889999999999


Q ss_pred             cCChHHHHHHHhccCCCCcccCCCC-CCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        111 QGITPVVKLLLTQRLDIDVNITDAY-GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      .|+.+++++|+++  +.+++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..++.++++.|.
T Consensus       168 ~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  245 (282)
T 1oy3_D          168 HKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (282)
T ss_dssp             TTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHH
Confidence            9999999999998  5677777754 999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCC
Q psy14007        190 PIVGDLPE  197 (198)
Q Consensus       190 ~~~~~~~~  197 (198)
                      +.+++++.
T Consensus       246 ~~ga~~~~  253 (282)
T 1oy3_D          246 AHGAPEPE  253 (282)
T ss_dssp             HTTCCCCC
T ss_pred             HcCCCcCc
Confidence            99998763

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.1e-43  Score=246.17  Aligned_cols=194  Identities=31%  Similarity=0.403  Sum_probs=163.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++
T Consensus        10 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   89 (237)
T 3b7b_A           10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH   89 (237)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            57888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhcC-CCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         81 KEIAELLIHNH-ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        81 ~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      .+++++|++.+ .+++..+..|.||+|+|+..++.+++++|+++  +.+++..+..|.||||.|+..|+.+++++|+++|
T Consensus        90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  167 (237)
T 3b7b_A           90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK--GSDINIRDNEENICLHWAAFSGCVDIAEILLAAK  167 (237)
T ss_dssp             HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88888888887 67777788888888888888888888888887  5567777788888888888888888888888888


Q ss_pred             CCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      ++++.++..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       168 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence            8888888888888888888888888888888777664

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-42  Score=244.06  Aligned_cols=189  Identities=25%  Similarity=0.321  Sum_probs=126.4

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CccccCCCCCcHHHHHHh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA----DVNAKADGGHSALQYACS   77 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~----~~~~~~~~~~t~l~~a~~   77 (198)
                      |+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.    +++..+..|.||||.|+.
T Consensus        46 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~  125 (241)
T 1k1a_A           46 RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN  125 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH
Confidence            5566666666666666666666666666666666666666666666666666666654    555556666666666666


Q ss_pred             cChHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHH
Q psy14007         78 KGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV  156 (198)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  156 (198)
                      .++.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+
T Consensus       126 ~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  203 (241)
T 1k1a_A          126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLV  203 (241)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            666666666666666666666 5677777777777777777777766  4566666777777777777777777777777


Q ss_pred             HcCCCcceecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        157 RCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       157 ~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      ++|++++.+|..|.||+++|+..+..++++.+.+..
T Consensus       204 ~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          204 RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             hcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            777777777777777777777777777777766543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=251.11  Aligned_cols=191  Identities=26%  Similarity=0.359  Sum_probs=155.9

Q ss_pred             cchhHHHHHhcCcH-HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGRE-DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~-~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      |.+||++|+..+.. .++++|++.|++++..+..|.||||+|+..|+.+++++|++.+++++.++..|.||++.|+..++
T Consensus        52 ~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~  131 (269)
T 4b93_B           52 FCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH  131 (269)
T ss_dssp             -----------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccCh
Confidence            67899999998875 58899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|++.|++++..+..|.||||+|+..|+.+++++|+++  |.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       132 ~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~--gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga  209 (269)
T 4b93_B          132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH--GASINASNNKGNTALHEAVIEKHVFVVELLLLHGA  209 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999998  66888999999999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhH-HHHHhhhcccccC
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHL-AQALTEIEPIVGD  194 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~-~~~~~~l~~~~~~  194 (198)
                      |++.+|..|+||+|+|+.++. .++++.+...+..
T Consensus       210 d~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          210 SVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             CSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             CCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence            999999999999999998876 4666666555443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-42  Score=244.31  Aligned_cols=194  Identities=25%  Similarity=0.330  Sum_probs=185.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLK----NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~----~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      +|+||||+|+..|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   87 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   87 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            58999999999999999999997    89999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCC----CCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC-CCCCCHHHHHHHhCChhh
Q psy14007         77 SKGWKEIAELLIHNHA----NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYACEEKRLTD  151 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~  151 (198)
                      ..++.+++++|++.+.    +++..+..|.||||+|+..++.+++++|++.  +.+++..+ ..|.||||.|+..++.++
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCcHHHHHHHcCCHHH
Confidence            9999999999999987    7888899999999999999999999999998  55777777 789999999999999999


Q ss_pred             HHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        152 AKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       152 ~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +++|+++|++++.++..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999999999988865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-43  Score=249.81  Aligned_cols=194  Identities=25%  Similarity=0.332  Sum_probs=157.7

Q ss_pred             CcchhHHHHHhcC-------------cHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCC
Q psy14007          1 NERLLIHWAALSG-------------REDVVDFLLKNKSPVDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD   66 (198)
Q Consensus         1 ~g~~~L~~A~~~g-------------~~~~~~~l~~~~~~~~~-~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~   66 (198)
                      +|+||||+|+..|             +.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus         9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~   88 (253)
T 1yyh_A            9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN   88 (253)
T ss_dssp             -------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            5899999999987             89999999999999865 488999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcChHHHHHHHHhcCC-CCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHH
Q psy14007         67 GGHSALQYACSKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE  145 (198)
Q Consensus        67 ~~~t~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~  145 (198)
                      .|.||||+|+..++.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.  +.+++..+..|.||||+|+.
T Consensus        89 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~  166 (253)
T 1yyh_A           89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWAAA  166 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT--TCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999987 8899999999999999999999999999998  66888999999999999999


Q ss_pred             hCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        146 EKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       146 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      .++.+++++|+++|++++.++..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       167 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            999999999999999999999999999999999999999999999988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-43  Score=248.53  Aligned_cols=193  Identities=22%  Similarity=0.337  Sum_probs=180.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKS----PVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~----~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      +|+||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            68999999999999999999998765    68899999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCC------CCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCC-CCCCHHHHHHHhCCh
Q psy14007         77 SKGWKEIAELLIHNHAN------VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRL  149 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~  149 (198)
                      ..++.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|+++  +.+++..+. .|.||||+|+..++.
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~  164 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNP  164 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999875      466778899999999999999999999998  668888887 899999999999999


Q ss_pred             hhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCC
Q psy14007        150 TDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDL  195 (198)
Q Consensus       150 ~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~  195 (198)
                      +++++|+++|++++.++..|.||+++|+..++.++++.|.+.+++.
T Consensus       165 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          165 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            9999999999999999999999999999999999999999998854

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-42  Score=248.68  Aligned_cols=190  Identities=28%  Similarity=0.325  Sum_probs=99.8

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhc---
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK---   78 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~---   78 (198)
                      |+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..   
T Consensus        59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~  138 (285)
T 3d9h_A           59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW  138 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555554   


Q ss_pred             -----------------------------ChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCc
Q psy14007         79 -----------------------------GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDV  129 (198)
Q Consensus        79 -----------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~  129 (198)
                                                   |+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.  +.++
T Consensus       139 ~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~  216 (285)
T 3d9h_A          139 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES--GADV  216 (285)
T ss_dssp             HHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC--CCCC
Confidence                                         444555555555555555555555555555555555555555555  2333


Q ss_pred             ccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc-ccCCC
Q psy14007        130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI-VGDLP  196 (198)
Q Consensus       130 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~-~~~~~  196 (198)
                      + .+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+  ++.++++.|.+. +.++|
T Consensus       217 ~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          217 N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            3 2445555666555555555566665556655555556666666655  223455555554 44433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.9e-42  Score=239.93  Aligned_cols=190  Identities=31%  Similarity=0.468  Sum_probs=180.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||.|+..+
T Consensus        43 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  122 (237)
T 3b7b_A           43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK  122 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Confidence            4789999999999999999999999999999999999999999999999999999998 788889999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+..++.+++++|+++|
T Consensus       123 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (237)
T 3b7b_A          123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA--KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD  200 (237)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998  6688889999999999999999999999999999


Q ss_pred             CCcceecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      ++++.+|..|.||+|+|+..+....+.++.+..
T Consensus       201 ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l  233 (237)
T 3b7b_A          201 SDVTLKNKEGETPLQCASLNSQVWSALQMSKAL  233 (237)
T ss_dssp             CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999987766665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.3e-42  Score=234.55  Aligned_cols=190  Identities=27%  Similarity=0.340  Sum_probs=180.9

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKS-PVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~-~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +.+|||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   84 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR   84 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            6799999999999999999999876 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC-----hhhHHH
Q psy14007         81 KEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR-----LTDAKL  154 (198)
Q Consensus        81 ~~~~~~l~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~  154 (198)
                      .+++++|+ ..+.+++..+..|.||||+|+..++.+++++|++++ ..+++..+..|.||||.|+..++     .+++++
T Consensus        85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           85 TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC-CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            99999999 677789999999999999999999999999999984 26888999999999999999998     999999


Q ss_pred             HHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        155 LVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       155 Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      |+++|++++.++..|.||+|+|+..++.++++.|.+++
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999998865

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.4e-42  Score=239.56  Aligned_cols=182  Identities=32%  Similarity=0.479  Sum_probs=105.8

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCC--CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhcC--CCccccCCCCCcHHHHHH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNK--SPVDP-KDDTNRTPLILAAAAGKLEIVRLLISNG--ADVNAKADGGHSALQYAC   76 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~--~~~~~-~~~~g~~~L~~A~~~~~~~~~~~L~~~~--~~~~~~~~~~~t~l~~a~   76 (198)
                      |+||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||.|+
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~  115 (228)
T 2dzn_A           36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV  115 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHH
Confidence            555666666666666666666655  33333 4455566666666666666666666555  555555555666666666


Q ss_pred             hcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHH
Q psy14007         77 SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV  156 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  156 (198)
                      ..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ ..+++..|..|.||||+|+..++.+++++|+
T Consensus       116 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC-cccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            666666666666666666655556666666666666666666666552 1445555555666666666666666666666


Q ss_pred             -HcCCCcceecCCCCCccccCCChhHHHH
Q psy14007        157 -RCGARLDIQNKEKKTPLDLLPLPHLAQA  184 (198)
Q Consensus       157 -~~g~~~~~~~~~g~t~~~~a~~~~~~~~  184 (198)
                       ++|++++.+|..|.||+++|...+..++
T Consensus       195 ~~~ga~~~~~~~~g~t~l~~A~~~~~~~~  223 (228)
T 2dzn_A          195 EKYGAEYDLVDNKGAKAEDVALNEQVKKF  223 (228)
T ss_dssp             HHHCCCSCCBCTTSCBGGGGCSSTTHHHH
T ss_pred             HhcCCCCCccCCCCCcHHHHHHHHHHHHH
Confidence             5566666666666666666655544443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2e-41  Score=225.62  Aligned_cols=160  Identities=44%  Similarity=0.588  Sum_probs=149.5

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI   83 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   83 (198)
                      ..|+.|++.|+.++|++|++.|++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007         84 AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                      +++|+++|++++.++..|+||||+|+..|+.+++++|+++  +.+++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999999999999999999999999999999999999998  66889999999999999999999999999999999987


Q ss_pred             ee
Q psy14007        164 IQ  165 (198)
Q Consensus       164 ~~  165 (198)
                      ..
T Consensus       164 ~~  165 (169)
T 4gpm_A          164 HH  165 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.1e-41  Score=235.30  Aligned_cols=193  Identities=25%  Similarity=0.299  Sum_probs=180.7

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcC--CCccc-cCCCCCcHHHHHHh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVD-PKDDTNRTPLILAAAAGKLEIVRLLISNG--ADVNA-KADGGHSALQYACS   77 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~-~~~~~g~~~L~~A~~~~~~~~~~~L~~~~--~~~~~-~~~~~~t~l~~a~~   77 (198)
                      |+||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999998765 48899999999999999999999999999  56665 77899999999999


Q ss_pred             cChHHHHHHHHhcC--CCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHH
Q psy14007         78 KGWKEIAELLIHNH--ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL  155 (198)
Q Consensus        78 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  155 (198)
                      .|+.+++++|++.|  .+++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999998  88899999999999999999999999999998  668889999999999999999999999999


Q ss_pred             HHcC-CCcceecCCCCCccccCCChhHHHHHhhhc-ccccCCC
Q psy14007        156 VRCG-ARLDIQNKEKKTPLDLLPLPHLAQALTEIE-PIVGDLP  196 (198)
Q Consensus       156 l~~g-~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~-~~~~~~~  196 (198)
                      +++| ++++.++..|.||+|+|+..++.++++.|. +.+.++.
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence            9999 999999999999999999999999999999 7787764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-41  Score=243.57  Aligned_cols=157  Identities=25%  Similarity=0.344  Sum_probs=128.2

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |+||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  203 (285)
T 3d9h_A          125 WHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR  203 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            5666666666666666666666666665433 377777777777777888888888888888888999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc-CC
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC-GA  160 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~  160 (198)
                      +++++|++.|++++. +..|.||||+|+..++.+++++|+++  |.+++.+|..|.||||+|+  ++.+++++|+++ |+
T Consensus       204 ~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a  278 (285)
T 3d9h_A          204 ACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF--GADTQAKNAEGKRPVELVP--PESPLAQLFLEREGA  278 (285)
T ss_dssp             HHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC--
T ss_pred             HHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhcc
Confidence            999999999999985 88899999999999999999999998  6788999999999999999  557999999998 77


Q ss_pred             Ccce
Q psy14007        161 RLDI  164 (198)
Q Consensus       161 ~~~~  164 (198)
                      ++..
T Consensus       279 ~l~~  282 (285)
T 3d9h_A          279 SLPK  282 (285)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=250.55  Aligned_cols=194  Identities=28%  Similarity=0.303  Sum_probs=178.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCC------------------------------------------------------CCCCcHHH
Q psy14007         81 KEIAELLIHNHANVNIQD------------------------------------------------------VRGATPLH  106 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~------------------------------------------------------~~~~~~l~  106 (198)
                      .+++++|+++|++++..+                                                      ..+.||+|
T Consensus       137 ~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~  216 (351)
T 3utm_A          137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH  216 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH
T ss_pred             HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH
Confidence            999999999998876543                                                      45678899


Q ss_pred             HHHhc---CChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHH
Q psy14007        107 RAASQ---GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQ  183 (198)
Q Consensus       107 ~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~  183 (198)
                      +|+..   +..+++++|++.  +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+
T Consensus       217 ~A~~~~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~  294 (351)
T 3utm_A          217 CAVASLHPKRKQVAELLLRK--GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ  294 (351)
T ss_dssp             HHHHCCSTTHHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHhCccHHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            99988   557899999988  6678889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccCCC
Q psy14007        184 ALTEIEPIVGDLP  196 (198)
Q Consensus       184 ~~~~l~~~~~~~~  196 (198)
                      +++.|.+.+.++.
T Consensus       295 ~v~~Ll~~gad~~  307 (351)
T 3utm_A          295 TCRLLLSYGSDPS  307 (351)
T ss_dssp             HHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCCC
Confidence            9999999988764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-41  Score=236.57  Aligned_cols=193  Identities=30%  Similarity=0.372  Sum_probs=184.1

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~-~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      ++++||.|+..|+.+.++++++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            67999999999999999999987654 67788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||.|+..++.+++++|+++|+
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  163 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA  163 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999998  66788899999999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +++.++..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence            999999999999999999999999999999988764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.5e-42  Score=255.57  Aligned_cols=193  Identities=23%  Similarity=0.276  Sum_probs=150.1

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc-----------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA-----------------   63 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~-----------------   63 (198)
                      +|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.                 
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~   98 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTD   98 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHH
Confidence            378899999999999999999999999999999999999999999999999999988875544                 


Q ss_pred             -----------------------------------cCCCCCcHHHHHHhcC--hHHHHHHHHhcCCCCCcCCCCCCcHHH
Q psy14007         64 -----------------------------------KADGGHSALQYACSKG--WKEIAELLIHNHANVNIQDVRGATPLH  106 (198)
Q Consensus        64 -----------------------------------~~~~~~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~l~  106 (198)
                                                         .+..|.||||+|+..|  +.+++++|++.|++++..+..|.||||
T Consensus        99 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~  178 (364)
T 3ljn_A           99 LVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLM  178 (364)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence                                               4445677777777777  777777777777777777777777777


Q ss_pred             HHHhcCChHHHHHHHhccCC---CCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHH
Q psy14007        107 RAASQGITPVVKLLLTQRLD---IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQ  183 (198)
Q Consensus       107 ~a~~~~~~~~~~~l~~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~  183 (198)
                      +|+..|+.+++++|++++..   .+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+
T Consensus       179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~  258 (364)
T 3ljn_A          179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL  258 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHH
T ss_pred             HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHH
Confidence            77777777777777776321   116667777777777777777777777777777777777777777777777777777


Q ss_pred             HHhhhccccc
Q psy14007        184 ALTEIEPIVG  193 (198)
Q Consensus       184 ~~~~l~~~~~  193 (198)
                      +++.|.+.++
T Consensus       259 ~v~~Ll~~~~  268 (364)
T 3ljn_A          259 LTKELLQKTD  268 (364)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHcCC
Confidence            7777776653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9e-41  Score=241.72  Aligned_cols=188  Identities=31%  Similarity=0.398  Sum_probs=164.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCC------------------------------------------------------------C
Q psy14007         81 KEIAELLIHNHANVNIQDV------------------------------------------------------------R  100 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~------------------------------------------------------------~  100 (198)
                      .+++++|+++|++++..+.                                                            .
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence            9999999999888766543                                                            4


Q ss_pred             CCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChh
Q psy14007        101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       101 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~  180 (198)
                      |.||||+|+..|+.+++++|++.  +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|... 
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~--g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-  275 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-  275 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-
Confidence            66888888999999999999987  567888899999999999999999999999999999999999999999999764 


Q ss_pred             HHHHHhhhccc
Q psy14007        181 LAQALTEIEPI  191 (198)
Q Consensus       181 ~~~~~~~l~~~  191 (198)
                      ..+.++++.+.
T Consensus       276 ~~~~l~~l~~~  286 (299)
T 1s70_B          276 ILGYLEELQKK  286 (299)
T ss_dssp             GGHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45555555443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-41  Score=252.27  Aligned_cols=193  Identities=22%  Similarity=0.327  Sum_probs=182.4

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCccccCCCCCcHHHHHHh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG---ADVNAKADGGHSALQYACS   77 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~---~~~~~~~~~~~t~l~~a~~   77 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++   .+++..+..|.||||+|+.
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~  244 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  244 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999987   7888999999999999999


Q ss_pred             cC---hHHHHHHHHhcCCCCCc--------CCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHh
Q psy14007         78 KG---WKEIAELLIHNHANVNI--------QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE  146 (198)
Q Consensus        78 ~~---~~~~~~~l~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~  146 (198)
                      .+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++.+ +.+++..|..|.||||+|+..
T Consensus       245 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS-CCCTTCCCTTCCCHHHHHHHH
T ss_pred             hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc-CCCccCcCCCCCCHHHHHHHc
Confidence            98   99999999999999876        5668999999999999999999999874 478899999999999999999


Q ss_pred             CChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        147 KRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       147 ~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      |+.+++++|+++|++++.+|..|.||+++|+..++.++++.|.+.+++
T Consensus       324 g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          324 GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999998765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-42  Score=249.14  Aligned_cols=191  Identities=18%  Similarity=0.156  Sum_probs=180.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.+++++|+++|++++..  +|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           30 HGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence            5899999999999999999999999999887  48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCC-CcHHHHHHhcCChHHHHHHHhccCCCCcccCCC-CCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         81 KEIAELLIHNHANVNIQDVRG-ATPLHRAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+++++|+++|++++..+..| .||||+|+..|+.+++++|++++.  +.  .+. .|.||||+|+..|+.+++++|+++
T Consensus       108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~--~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (285)
T 3kea_A          108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--ST--FDLAILLSCIHITIKNGHVDMMILLLDY  183 (285)
T ss_dssp             HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC--TT--CCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--cc--ccccCCccHHHHHHHcChHHHHHHHHHc
Confidence            999999999999999999999 799999999999999999999853  33  333 789999999999999999999999


Q ss_pred             CCCcceecCCCCCc-cccCCChhHHHHHhhhcccccCCCC
Q psy14007        159 GARLDIQNKEKKTP-LDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       159 g~~~~~~~~~g~t~-~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      |++++.++..|.|| +|+|+..++.++++.|.+.+.++..
T Consensus       184 gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred             CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999998 9999999999999999999988753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.9e-41  Score=240.60  Aligned_cols=180  Identities=25%  Similarity=0.233  Sum_probs=155.9

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--------------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD--------------------   60 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~--------------------   60 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++++.                    
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            489999999999999999999999999999999999999999999999999999998754                    


Q ss_pred             ---------------------------ccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCC-CCcHHHHHHhcC
Q psy14007         61 ---------------------------VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQG  112 (198)
Q Consensus        61 ---------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~a~~~~  112 (198)
                                                 ++.++..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence                                       5567788999999999999999999999999999998854 999999999999


Q ss_pred             ChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHH
Q psy14007        113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA  182 (198)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~  182 (198)
                      +.+++++|+++  |.+++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+++|......
T Consensus       204 ~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          204 AASVLELLLKA--GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred             CHHHHHHHHHc--CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence            99999999998  678899999999999999999999999999999999999999999999999876543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-40  Score=239.38  Aligned_cols=193  Identities=28%  Similarity=0.323  Sum_probs=115.9

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++.
T Consensus        39 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  118 (285)
T 1wdy_A           39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  118 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCCC--------------------------------------------CCcCCCCCCcHHHHHHhcCC----
Q psy14007         82 EIAELLIHNHAN--------------------------------------------VNIQDVRGATPLHRAASQGI----  113 (198)
Q Consensus        82 ~~~~~l~~~~~~--------------------------------------------~~~~~~~~~~~l~~a~~~~~----  113 (198)
                      +++++|++.|++                                            ++..+..|.||+|+|+..+.    
T Consensus       119 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  198 (285)
T 1wdy_A          119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  198 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred             HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH
Confidence            555555555444                                            44444445555555555555    


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH-cCCCcceecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR-CGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      .+++++|+++  +.+++..+..|.||||+|+..++.+++++|++ .|++++.++..|.||+|+|+..++.++++.|.+.+
T Consensus       199 ~~i~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          199 EAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHHHHHHHT--TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            4455555554  34555666666777777777777777777776 66777777777777777777777777777777766


Q ss_pred             cCCC
Q psy14007        193 GDLP  196 (198)
Q Consensus       193 ~~~~  196 (198)
                      +++.
T Consensus       277 a~~~  280 (285)
T 1wdy_A          277 ASTD  280 (285)
T ss_dssp             SCSC
T ss_pred             CCCC
Confidence            6653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.6e-42  Score=245.93  Aligned_cols=193  Identities=26%  Similarity=0.278  Sum_probs=176.8

Q ss_pred             cchhHHHHHhcCcHH----HHHHHHhCCCCCCC----CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcccc------
Q psy14007          2 ERLLIHWAALSGRED----VVDFLLKNKSPVDP----KDDTNRTPLILAAAA---GKLEIVRLLISNGADVNAK------   64 (198)
Q Consensus         2 g~~~L~~A~~~g~~~----~~~~l~~~~~~~~~----~~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~~~~------   64 (198)
                      |+||||+|+..|+.+    ++++|++.|.+++.    .+..|.||||+|+..   |+.+++++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            789999999999997    66777789999998    899999999999999   9999999999988776533      


Q ss_pred             -----CCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCC-------------CCcHHHHHHhcCChHHHHHHHhcc-C
Q psy14007         65 -----ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-------------GATPLHRAASQGITPVVKLLLTQR-L  125 (198)
Q Consensus        65 -----~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~~~-~  125 (198)
                           +..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++.. .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 367999999999999999999999999999998876             999999999999999999999921 2


Q ss_pred             CCCcccCCCCCCCHHHHHHH--hCChh-------hHHHHHHcCCCc-------ceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        126 DIDVNITDAYGNTPLHYACE--EKRLT-------DAKLLVRCGARL-------DIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       126 ~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      +.+++..|..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||+|+|+..++.++++.|.
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            77889999999999999999  77888       999999999999       999999999999999999999999999


Q ss_pred             ccccC
Q psy14007        190 PIVGD  194 (198)
Q Consensus       190 ~~~~~  194 (198)
                      +.+.+
T Consensus       242 ~~g~~  246 (256)
T 2etb_A          242 QREFS  246 (256)
T ss_dssp             HHHHH
T ss_pred             hCCCC
Confidence            87754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-40  Score=236.79  Aligned_cols=193  Identities=24%  Similarity=0.277  Sum_probs=163.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPK-DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~-~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|+++||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            4789999999999999999999999999987 778999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccC----------CCCCCCHHHHHHHhCCh
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNIT----------DAYGNTPLHYACEEKRL  149 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~----------~~~g~t~l~~a~~~~~~  149 (198)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++.  +++..          +..|.||||.|+..++.
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA--NVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC--CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC--CcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence            9999999999999999999999999999999999999999998743  44444          56677777777777777


Q ss_pred             hhHHHHHHc-CCCcceecCCCCCccccCCChhH----HHHHhhhcccccCC
Q psy14007        150 TDAKLLVRC-GARLDIQNKEKKTPLDLLPLPHL----AQALTEIEPIVGDL  195 (198)
Q Consensus       150 ~~~~~Ll~~-g~~~~~~~~~g~t~~~~a~~~~~----~~~~~~l~~~~~~~  195 (198)
                      +++++|+++ |++++..+..|.||+|.|+..+.    .++++.|.+.+.++
T Consensus       162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~  212 (285)
T 1wdy_A          162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV  212 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC
Confidence            777777765 77766666666666666666555    66666666665554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-40  Score=251.78  Aligned_cols=194  Identities=30%  Similarity=0.379  Sum_probs=177.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~   92 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH   92 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|++.  +.+.+..+..|.||||.|+..|+.+++++|+++|+
T Consensus        93 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  170 (437)
T 1n11_A           93 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  170 (437)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999987  45667778889999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +++..+..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  206 (437)
T 1n11_A          171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH  206 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999988877653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-41  Score=239.57  Aligned_cols=193  Identities=26%  Similarity=0.332  Sum_probs=156.4

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCC--------CCCCCCCCCCHHHHHHHcCCH-HHHHHHHhcCCCccccCCCCCcHH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSP--------VDPKDDTNRTPLILAAAAGKL-EIVRLLISNGADVNAKADGGHSAL   72 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~--------~~~~~~~g~~~L~~A~~~~~~-~~~~~L~~~~~~~~~~~~~~~t~l   72 (198)
                      +.++|+.|+..|+.++|++|++.+.+        ++..+..|.|||+.|+..+.. .++++|++.|++++.+|..|.|||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            45899999999999999999998875        345677899999999987765 588999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhH
Q psy14007         73 QYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA  152 (198)
Q Consensus        73 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  152 (198)
                      |+|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.  +.+++..|..|.||||+|+..|+.+++
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~--g~~~n~~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS--NAKPNKKDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999999999999998  668889999999999999999999999


Q ss_pred             HHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        153 KLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       153 ~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      ++|+++|++++..+..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       169 ~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          169 ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999999999999998875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-40  Score=249.32  Aligned_cols=185  Identities=29%  Similarity=0.378  Sum_probs=83.2

Q ss_pred             chhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHH
Q psy14007          3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE   82 (198)
Q Consensus         3 ~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~   82 (198)
                      +||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..++.+
T Consensus       213 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  292 (437)
T 1n11_A          213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP  292 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCc
Q psy14007         83 IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL  162 (198)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  162 (198)
                      ++++|+++|++++..+..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus       293 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence            44444444444444444444444444444444444444444  3334444444444444444444444444444444444


Q ss_pred             ceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        163 DIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       163 ~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      +.++..|.||+++|...++.++++.|.
T Consensus       371 ~~~~~~g~t~l~~A~~~g~~~~~~~l~  397 (437)
T 1n11_A          371 NEVSSDGTTPLAIAKRLGYISVTDVLK  397 (437)
T ss_dssp             CCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            444444444444444444444444433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.9e-40  Score=229.81  Aligned_cols=191  Identities=31%  Similarity=0.429  Sum_probs=99.4

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDD-TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~-~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      |.||||+|+..|+.+++++|+++|.+++.... .|.||||+|+..++.+++++|++.|++++.++..|.||||.|+..++
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  121 (240)
T 3eu9_A           42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH  121 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH
Confidence            34444444444444444444444444332222 24444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC-hHHHHHHHhccCCCCcccCCC-CCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGI-TPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~l~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+++++|++.|++++..+..|.||+|+|+..+. .+++++|++.  +.+++..+. .|.||||.|+..++.+++++|+++
T Consensus       122 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (240)
T 3eu9_A          122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF--NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA  199 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT--TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc--CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            444444444444444444444444444443333 3444444444  334444443 566666666666667777777777


Q ss_pred             CCCcceecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        159 GARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       159 g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      |++++.++..|.||+++|+..++.+++++|.+.+.+
T Consensus       200 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          200 GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            777766666777777777777777777666665544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-40  Score=248.07  Aligned_cols=194  Identities=24%  Similarity=0.306  Sum_probs=181.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHH--------hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLL--------KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSAL   72 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~--------~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l   72 (198)
                      +|+||||+|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L  203 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  203 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHH
Confidence            4899999999999998887776        89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHhcC---CCCCcCCCCCCcHHHHHHhcC---ChHHHHHHHhccCCCCccc--------CCCCCCC
Q psy14007         73 QYACSKGWKEIAELLIHNH---ANVNIQDVRGATPLHRAASQG---ITPVVKLLLTQRLDIDVNI--------TDAYGNT  138 (198)
Q Consensus        73 ~~a~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~~~--------~~~~g~t  138 (198)
                      |+|+..|+.+++++|++.+   .+++..+..|.||||+|+..+   +.+++++|++++.  +++.        .+..|.|
T Consensus       204 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~--~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA--KVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC--CSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCC--CcccccccccCcccccCCC
Confidence            9999999999999999988   789999999999999999998   8999999999854  5443        5678999


Q ss_pred             HHHHHHHhCChhhHHHHHHcC-CCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        139 PLHYACEEKRLTDAKLLVRCG-ARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       139 ~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      |||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE  340 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            999999999999999999886 9999999999999999999999999999999988764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.2e-40  Score=238.42  Aligned_cols=194  Identities=26%  Similarity=0.280  Sum_probs=174.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHh----CCCCCC----CCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCc-------c
Q psy14007          1 NERLLIHWAALSGREDVVDFLLK----NKSPVD----PKDDTNRTPLILAAAA---GKLEIVRLLISNGADV-------N   62 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~----~~~~~~----~~~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~-------~   62 (198)
                      +|+||||+|+..|+.++|+.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|++.|+++       +
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            48899999999999998888886    566665    4578999999999987   9999999999987542       2


Q ss_pred             ----ccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCC--------------CCCcHHHHHHhcCChHHHHHHHhcc
Q psy14007         63 ----AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV--------------RGATPLHRAASQGITPVVKLLLTQR  124 (198)
Q Consensus        63 ----~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~l~~~~  124 (198)
                          ..+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.+++++|++.+
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                2566899999999999999999999999999999887              7999999999999999999999932


Q ss_pred             -CCCCcccCCCCCCCHHHHHHHhCC---------hhhHHHHHHcCCCcc-------eecCCCCCccccCCChhHHHHHhh
Q psy14007        125 -LDIDVNITDAYGNTPLHYACEEKR---------LTDAKLLVRCGARLD-------IQNKEKKTPLDLLPLPHLAQALTE  187 (198)
Q Consensus       125 -~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~~~~a~~~~~~~~~~~  187 (198)
                       .+.+++..|..|.||||+|+..++         .+++++|+++|++++       .+|..|.||+|+|+..++.++++.
T Consensus       172 ~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~  251 (273)
T 2pnn_A          172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY  251 (273)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHH
Confidence             277899999999999999999998         799999999999986       589999999999999999999999


Q ss_pred             hcccccC
Q psy14007        188 IEPIVGD  194 (198)
Q Consensus       188 l~~~~~~  194 (198)
                      |.+.+++
T Consensus       252 Ll~~ga~  258 (273)
T 2pnn_A          252 ILQREIH  258 (273)
T ss_dssp             HHHHHTC
T ss_pred             HHHCCCC
Confidence            9999884

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.3e-39  Score=224.59  Aligned_cols=193  Identities=24%  Similarity=0.308  Sum_probs=182.1

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~   80 (198)
                      |.++|++|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+.+++..+ ..|.||||.|+..++
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            6899999999999999999999999999999999999999999999999999999999887655 459999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC-hhhHHHHHHcC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR-LTDAKLLVRCG  159 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~g  159 (198)
                      .+++++|++.|++++..+..|.||+|+|+..++.+++++|+++  +.+++..+..|.||||.|+..++ .+++++|++.|
T Consensus        89 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  166 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN  166 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc--CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998  66788899999999999997776 89999999999


Q ss_pred             CCcceecC-CCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        160 ARLDIQNK-EKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       160 ~~~~~~~~-~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      ++++..+. .|.||+|+|+..++.++++.|.+.+.++.
T Consensus       167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999997 89999999999999999999999988764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-39  Score=237.95  Aligned_cols=195  Identities=28%  Similarity=0.293  Sum_probs=150.9

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCccc-----------------
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDD-TNRTPLILAAAAGKLEIVRLLISNGADVNA-----------------   63 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~-~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~-----------------   63 (198)
                      |+|+||.|++.|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.                 
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            67889999999999999999999999887765 488999999999999999999888776543                 


Q ss_pred             ----------------cCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcC----------CCCCCcHHHHHHhcCChHHH
Q psy14007         64 ----------------KADGGHSALQYACSKGWKEIAELLIHNHANVNIQ----------DVRGATPLHRAASQGITPVV  117 (198)
Q Consensus        64 ----------------~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~  117 (198)
                                      .+..|.||++.|+..++.+++++|+++|++++..          +..|.||||+|+..|+.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence                            3445677777777777777777777777665543          23466777777777777776


Q ss_pred             HHHHhc-cC-----------------------------------CCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc-CC
Q psy14007        118 KLLLTQ-RL-----------------------------------DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC-GA  160 (198)
Q Consensus       118 ~~l~~~-~~-----------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~  160 (198)
                      ++|+++ +.                                   |.+++.++..|.||||.|+..++.+++++|++. |+
T Consensus       185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  264 (337)
T 4g8k_A          185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  264 (337)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC
T ss_pred             HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC
Confidence            666642 11                                   345566677788888888888888888888874 78


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +++.+|..|.||||+|+..|+.++++.|.+.++++.
T Consensus       265 ~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          265 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            888888899999999999999999999888887764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-38  Score=233.87  Aligned_cols=175  Identities=31%  Similarity=0.375  Sum_probs=165.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC---------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA---------------   65 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~---------------   65 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+               
T Consensus        90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~  169 (351)
T 3utm_A           90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL  169 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhh
Confidence            48999999999999999999999999999999999999999999999999999999999876544               


Q ss_pred             ---------------------------------------CCCCcHHHHHHhc---ChHHHHHHHHhcCCCCCcCCCCCCc
Q psy14007         66 ---------------------------------------DGGHSALQYACSK---GWKEIAELLIHNHANVNIQDVRGAT  103 (198)
Q Consensus        66 ---------------------------------------~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~  103 (198)
                                                             ..|.||||.|+..   +..+++++|++.|++++..+..|.|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  249 (351)
T 3utm_A          170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT  249 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCC
Confidence                                                   4567999999998   6789999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCC
Q psy14007        104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP  177 (198)
Q Consensus       104 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~  177 (198)
                      |||+|+..|+.+++++|+++  +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.
T Consensus       250 ~L~~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          250 PLHVAAERAHNDVMEVLHKH--GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            99999999999999999998  6688899999999999999999999999999999999999999999999994

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.5e-39  Score=215.42  Aligned_cols=157  Identities=41%  Similarity=0.557  Sum_probs=149.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHH
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      +.|+.||+.|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCC
Q psy14007        117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDL  195 (198)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~  195 (198)
                      +++|+++  |.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.++++.|.+.|+++
T Consensus        86 v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           86 VKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            9999998  6688999999999999999999999999999999999999999999999999999999999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=7.1e-39  Score=214.39  Aligned_cols=170  Identities=30%  Similarity=0.379  Sum_probs=155.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~-~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      ++.+|||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+
T Consensus         1 G~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             ---CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CchhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence            467899999999999999999999987 7888999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR--GADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998  6688899999999999999999999999999999


Q ss_pred             CCcceecCCCCCc
Q psy14007        160 ARLDIQNKEKKTP  172 (198)
Q Consensus       160 ~~~~~~~~~g~t~  172 (198)
                      +++..++..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            9999988888887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.6e-40  Score=236.14  Aligned_cols=194  Identities=24%  Similarity=0.257  Sum_probs=172.5

Q ss_pred             cchhHHHHHhcCcHHH----HHHHHhCCCCCCCCC----CCCCCHHHHHH---HcCCHHHHHHHHhcCCC----------
Q psy14007          2 ERLLIHWAALSGREDV----VDFLLKNKSPVDPKD----DTNRTPLILAA---AAGKLEIVRLLISNGAD----------   60 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~----~~~l~~~~~~~~~~~----~~g~~~L~~A~---~~~~~~~~~~L~~~~~~----------   60 (198)
                      |+++||.|+..|+.+.    ++++++.|.+++..+    ..|.||||+|+   +.|+.+++++|++.|++          
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            6899999999999995    455555899888665    67999999999   67999999999998643          


Q ss_pred             -ccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC--------------CCCCcHHHHHHhcCChHHHHHHHhcc-
Q psy14007         61 -VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD--------------VRGATPLHRAASQGITPVVKLLLTQR-  124 (198)
Q Consensus        61 -~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~~~-  124 (198)
                       .+..+..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+++++|++.+ 
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence             34445589999999999999999999999999999988              58999999999999999999999932 


Q ss_pred             CCCCcccCCCCCCCHHHHHHHhCC---------hhhHHHHHHcCCCc-------ceecCCCCCccccCCChhHHHHHhhh
Q psy14007        125 LDIDVNITDAYGNTPLHYACEEKR---------LTDAKLLVRCGARL-------DIQNKEKKTPLDLLPLPHLAQALTEI  188 (198)
Q Consensus       125 ~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~g~t~~~~a~~~~~~~~~~~l  188 (198)
                      .+.+++..|..|.||||+|+..++         .+++++|+++|+++       +.+|..|.||+|+|+..++.++++.|
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence            377899999999999999999887         69999999999998       78999999999999999999999999


Q ss_pred             cccccCC
Q psy14007        189 EPIVGDL  195 (198)
Q Consensus       189 ~~~~~~~  195 (198)
                      .+.+.+.
T Consensus       245 l~~g~~~  251 (260)
T 3jxi_A          245 IRREIAD  251 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHhCCCc
Confidence            9877653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.3e-39  Score=232.20  Aligned_cols=187  Identities=17%  Similarity=0.127  Sum_probs=172.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCC-CcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG-HSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~-~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~  140 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN  140 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCH-HHHHHHhCChhhHHHHHHc
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP-LHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~  158 (198)
                      +.+++++|+++|++.... ..|.||||+|+..|+.+++++|+++  |.+++..+..|.|| ||+|+..++.+++++|+++
T Consensus       141 ~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          141 DVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDY--MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             CHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHH--HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             CHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHc--CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999876322 2789999999999999999999998  66888999999998 9999999999999999999


Q ss_pred             CCCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        159 GARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       159 g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      |++++..+.       .|+..++.++++.|.+.+.++..
T Consensus       218 gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          218 DINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKS  249 (285)
T ss_dssp             CBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCC
Confidence            999988873       56778999999999988876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.2e-38  Score=222.06  Aligned_cols=179  Identities=25%  Similarity=0.286  Sum_probs=165.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC------ccccCCCCCcHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD------VNAKADGGHSALQY   74 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~------~~~~~~~~~t~l~~   74 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+.+      ++..+..|.||||+
T Consensus        44 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~  123 (236)
T 1ikn_D           44 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL  123 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHH
Confidence            488999999999999999999999999999999999999999999999999999999875      45677889999999


Q ss_pred             HHhcChHHHHHHHHhcCCCCCcCCC-CCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         75 ACSKGWKEIAELLIHNHANVNIQDV-RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        75 a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      |+..++.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++  |.+++..+..|.||||+|+..++.++++
T Consensus       124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~~  201 (236)
T 1ikn_D          124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQQ  201 (236)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccCCCCCHHHHHHccCchHHHH
Confidence            9999999999999999999999997 999999999999999999999998  6788899999999999999999999999


Q ss_pred             HHHHcCCCcc--eecCCCCCccccCCChhH
Q psy14007        154 LLVRCGARLD--IQNKEKKTPLDLLPLPHL  181 (198)
Q Consensus       154 ~Ll~~g~~~~--~~~~~g~t~~~~a~~~~~  181 (198)
                      +|+++|++..  .++..|.||.+.+.....
T Consensus       202 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          202 QLGQLTLENLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             HHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred             HHHHcchhhhhcCCccchHHHHhhhccccc
Confidence            9999999876  888899999999876543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.3e-39  Score=222.92  Aligned_cols=182  Identities=25%  Similarity=0.347  Sum_probs=170.9

Q ss_pred             CcHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcC
Q psy14007         13 GREDVVDFLLKNKSPVDPK-DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH   91 (198)
Q Consensus        13 g~~~~~~~l~~~~~~~~~~-~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~   91 (198)
                      |+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6788999999999998865 789999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCC
Q psy14007         92 A-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK  170 (198)
Q Consensus        92 ~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~  170 (198)
                      . +++..+..+.||||+|+..++.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc--CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            7 8888899999999999999999999999997  667888999999999999999999999999999999999999999


Q ss_pred             CccccCCChhHHHHHhhhcccccCCC
Q psy14007        171 TPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       171 t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      ||+|+|+..++.++++.|.+.+.++.
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~ga~~~  185 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDHFANRD  185 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            99999999999999999999988764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.2e-37  Score=207.38  Aligned_cols=160  Identities=29%  Similarity=0.406  Sum_probs=153.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||+|+..|+.+++++|+++++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997  66888899999999999999999999999999876


Q ss_pred             Cc
Q psy14007        161 RL  162 (198)
Q Consensus       161 ~~  162 (198)
                      ++
T Consensus       160 ~~  161 (167)
T 3v31_A          160 KL  161 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.6e-37  Score=205.82  Aligned_cols=157  Identities=29%  Similarity=0.347  Sum_probs=149.0

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      ..+|||.|+..|+.+++++|+++|++++..+..|.||||+|+. ++.+++++|+++|++++.++..|.||||.|+..++.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            5689999999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCC-cccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      +++++|+++|++++..+..|.||||+|++.|+.+++++|++++  .+ ++..+..|.||||+|+..++.+++++|+++|+
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT--ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS--CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999984  34 57889999999999999999999999999998


Q ss_pred             C
Q psy14007        161 R  161 (198)
Q Consensus       161 ~  161 (198)
                      |
T Consensus       162 d  162 (162)
T 1ihb_A          162 G  162 (162)
T ss_dssp             -
T ss_pred             C
Confidence            6

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=4.6e-37  Score=205.06  Aligned_cols=156  Identities=39%  Similarity=0.532  Sum_probs=146.1

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      +.++|++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      +++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..|..|.||||+|+..++.+++++|+++|
T Consensus        94 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999998  6678888999999999999999999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=6.5e-39  Score=229.65  Aligned_cols=190  Identities=21%  Similarity=0.210  Sum_probs=178.8

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CccccCCCCCcHHHHHH--
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSP--VDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYAC--   76 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~--~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~a~--   76 (198)
                      +++++|.|+..|+.+.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            35788999999999999999988765  78899999999999999999999999999998 89999999999999999  


Q ss_pred             ---hcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         77 ---SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        77 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                         ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++  |.+++..|..|.||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~--gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               67899999999999999999999999999999999999999999998  6688899999999999999999999999


Q ss_pred             HHHH-cCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        154 LLVR-CGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       154 ~Ll~-~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      +|++ .|++++.+|..|.||+++|+..++.++++.|.+...
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999 899999999999999999999999999999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-38  Score=230.37  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHhcC-CCccccCCCCCcHHHHHHh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK---LEIVRLLISNG-ADVNAKADGGHSALQYACS   77 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~---~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~   77 (198)
                      |+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+   .++++.|++.+ .+++.++..|.||||+|+.
T Consensus       131 g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHH
Confidence            4555555555555555555555555555555555555555555554   44444444443 3444555555555555555


Q ss_pred             ----cChHHHHHHHHhc--------------------CCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC
Q psy14007         78 ----KGWKEIAELLIHN--------------------HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD  133 (198)
Q Consensus        78 ----~~~~~~~~~l~~~--------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  133 (198)
                          .++.+++++|++.                    |++++..+..|.||||.|+.      +++|+++    +++..|
T Consensus       211 ~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~----~~n~~d  280 (327)
T 1sw6_A          211 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN----MLNAQD  280 (327)
T ss_dssp             HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH----TTTCCC
T ss_pred             HccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh----CCCCCC
Confidence                4555555555443                    44555555555555555543      4445543    477889


Q ss_pred             CCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChh
Q psy14007        134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       134 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~  180 (198)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|
T Consensus       281 ~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2e-37  Score=210.85  Aligned_cols=163  Identities=26%  Similarity=0.303  Sum_probs=136.4

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q psy14007         28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR  107 (198)
Q Consensus        28 ~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  107 (198)
                      ++..+..|.||||+|+..|+.+++++|++.+++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45577788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhh
Q psy14007        108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTE  187 (198)
Q Consensus       108 a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~  187 (198)
                      |+..++.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.++++.
T Consensus       108 A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            8888888888888887  55777788888888888888888888888888888888888888888888888888888888


Q ss_pred             hcccc
Q psy14007        188 IEPIV  192 (198)
Q Consensus       188 l~~~~  192 (198)
                      |.+.+
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            77654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.7e-37  Score=226.34  Aligned_cols=190  Identities=29%  Similarity=0.302  Sum_probs=172.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPK----------DDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGH   69 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~----------~~~g~~~L~~A~~~~~~~~~~~L~~-~~~~~~~~~~~~~   69 (198)
                      +|+||||+|+..|+.+++++++++|++++..          +..|.||||+|++.|+.+++++|++ .|++++.++..|.
T Consensus       124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~  203 (337)
T 4g8k_A          124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  203 (337)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCC
Confidence            4889999999999999999999999887643          4468999999999999999999996 5999999999999


Q ss_pred             cHHHHHHhcCh----HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHH
Q psy14007         70 SALQYACSKGW----KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE  145 (198)
Q Consensus        70 t~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~  145 (198)
                      |+++.++..+.    .+++++|+++|++++.++..|.||||+|+..|+.++++.|++.. +.+++..|..|.||||+|+.
T Consensus       204 t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~-~~~vn~~d~~G~TpL~~A~~  282 (337)
T 4g8k_A          204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVE  282 (337)
T ss_dssp             CHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST-TCCTTCBCTTSCBHHHHHHH
T ss_pred             cHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc-CCcccCcCCCCCCHHHHHHH
Confidence            99998776433    56889999999999999999999999999999999999999853 67899999999999999999


Q ss_pred             hCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        146 EKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       146 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      .|+.+++++|+++|++++.     .+|+++|+..++.++++.|++.|+++.
T Consensus       283 ~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          283 LKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             TTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             cCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            9999999999999999864     469999999999999999999998763

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-37  Score=231.15  Aligned_cols=189  Identities=20%  Similarity=0.214  Sum_probs=163.6

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhC----CCCCCC-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHhcC
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKN----KSPVDP-----------------KDDTNRTPLILAAAAG--KLEIVRLLISNG   58 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~----~~~~~~-----------------~~~~g~~~L~~A~~~~--~~~~~~~L~~~~   58 (198)
                      |+||||+|+..|+.+++++|++.    |.+++.                 .+..|.||||+|+..|  +.+++++|++.|
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            45556666666666666666555    444433                 7778999999999999  999999999999


Q ss_pred             CCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCC-----CCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC
Q psy14007         59 ADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN-----VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD  133 (198)
Q Consensus        59 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  133 (198)
                      ++++.++..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++  |.+++..|
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~~~~d  241 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM--GIDVNMED  241 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT--TCCTTCCC
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCCC
Confidence            99999999999999999999999999999999998     999999999999999999999999999998  66889999


Q ss_pred             CCCCCHHHHHHHhCChhhHHHHHHcCCCcce------------ecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDI------------QNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       134 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~------------~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      ..|.||||+|+..|+.+++++|+++|++++.            .+..+.+|++.|+..+..+.+..+.+..
T Consensus       242 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            9999999999999999999999999877533            5667899999999999887777765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.7e-36  Score=203.97  Aligned_cols=157  Identities=23%  Similarity=0.350  Sum_probs=150.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI-SNGADVNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+ ..+.+++..+..|.||||.|+..+
T Consensus        38 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  117 (201)
T 3hra_A           38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG  117 (201)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC
Confidence            5889999999999999999999999999999999999999999999999999999 467789999999999999999999


Q ss_pred             hHHHHHHHHhcC-CCCCcCCCCCCcHHHHHHhcCC-----hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         80 WKEIAELLIHNH-ANVNIQDVRGATPLHRAASQGI-----TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        80 ~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      +.+++++|++.| .+++..+..|.||||+|+..++     .+++++|+++  |.+++..|..|.||||+|+..++.++++
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN--GADQSIKDNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             CHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence            999999999999 8999999999999999999998     8999999998  6688899999999999999999999999


Q ss_pred             HHHHcC
Q psy14007        154 LLVRCG  159 (198)
Q Consensus       154 ~Ll~~g  159 (198)
                      +|+++|
T Consensus       196 ~Ll~~G  201 (201)
T 3hra_A          196 ILAQYN  201 (201)
T ss_dssp             HHHTCC
T ss_pred             HHHhcC
Confidence            999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=6.2e-37  Score=208.41  Aligned_cols=157  Identities=30%  Similarity=0.379  Sum_probs=152.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  113 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY  113 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||+|+|+..++.+++++|+++|
T Consensus       114 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998  6688899999999999999999999999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.1e-36  Score=202.83  Aligned_cols=166  Identities=26%  Similarity=0.346  Sum_probs=146.5

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            56889999999999999999987 56788888999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.|||++|+..++.+++++|+++|+
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999987  56788888899999999999999999999999999


Q ss_pred             CcceecCCC
Q psy14007        161 RLDIQNKEK  169 (198)
Q Consensus       161 ~~~~~~~~g  169 (198)
                      +++..+..+
T Consensus       163 ~~~~~~~~~  171 (179)
T 3f6q_A          163 NLNRIPYKD  171 (179)
T ss_dssp             CCSCBCCCC
T ss_pred             CcccCCccc
Confidence            887665443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=8.3e-36  Score=195.86  Aligned_cols=152  Identities=28%  Similarity=0.393  Sum_probs=141.9

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      |..++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            46789999999999999999999998876 57889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL  155 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  155 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999998  668888999999999999999999999887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-36  Score=216.42  Aligned_cols=172  Identities=23%  Similarity=0.298  Sum_probs=145.0

Q ss_pred             CcchhHHHHHhc---CcHHHHHHHHhCCCCC-----------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCC
Q psy14007          1 NERLLIHWAALS---GREDVVDFLLKNKSPV-----------DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD   66 (198)
Q Consensus         1 ~g~~~L~~A~~~---g~~~~~~~l~~~~~~~-----------~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~   66 (198)
                      +|+||||+|+..   |+.+++++|+++|+++           ...+..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  132 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN  132 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBC
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccc
Confidence            489999999987   9999999999987542           22566899999999999999999999999999998886


Q ss_pred             --------------CCCcHHHHHHhcChHHHHHHHHh---cCCCCCcCCCCCCcHHHHHHhcCC---------hHHHHHH
Q psy14007         67 --------------GGHSALQYACSKGWKEIAELLIH---NHANVNIQDVRGATPLHRAASQGI---------TPVVKLL  120 (198)
Q Consensus        67 --------------~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~l  120 (198)
                                    .|.||||+|+..|+.+++++|++   .|++++.++..|.||||+|+..++         .+++++|
T Consensus       133 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L  212 (273)
T 2pnn_A          133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI  212 (273)
T ss_dssp             SGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence                          79999999999999999999999   999999999999999999999888         7899999


Q ss_pred             HhccCCCCcc-------cCCCCCCCHHHHHHHhCChhhHHHHHHcCC-CcceecCCCCCccc
Q psy14007        121 LTQRLDIDVN-------ITDAYGNTPLHYACEEKRLTDAKLLVRCGA-RLDIQNKEKKTPLD  174 (198)
Q Consensus       121 ~~~~~~~~~~-------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~~~  174 (198)
                      ++++  .+++       ..|..|.||||+|+..|+.+++++|+++|+ |+......+.+|.+
T Consensus       213 l~~g--a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          213 LILG--AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHH--HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHhh--hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9984  4554       589999999999999999999999999999 78777777766643

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.5e-36  Score=202.16  Aligned_cols=161  Identities=27%  Similarity=0.341  Sum_probs=153.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC
Q psy14007         34 TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI  113 (198)
Q Consensus        34 ~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  113 (198)
                      .|.||||.|+..|+.+++++|++.+.+++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      .+++++|+++  +.+++..+..|.||||.|+..++.+++++|+++|++++.++..|.||+++|+..++.++++.|.+.+.
T Consensus        82 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           82 TDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            9999999998  66888999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CCC
Q psy14007        194 DLP  196 (198)
Q Consensus       194 ~~~  196 (198)
                      ++-
T Consensus       160 ~~~  162 (167)
T 3v31_A          160 KLL  162 (167)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-39  Score=224.45  Aligned_cols=182  Identities=21%  Similarity=0.215  Sum_probs=166.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.+|||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCC-CCCCcHHHHH--HhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007         81 KEIAELLIHNHANVNIQD-VRGATPLHRA--ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                      .+++++|++.|++++..+ ..|.||||+|  +..++.+++++|++.  |.+++..+..|.||++.++...   ..++|++
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~  174 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV--EQSMGLMNSGAVYALWDYSAEF---GDELSFR  174 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH--HHHTTTSGGGEEEESSCBCCSS---TTBCCBC
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc--CCCcccccCCchHHHHHHhhcc---ccccCcc
Confidence            999999999999999986 6999999999  999999999999998  5578888888889988655543   3356788


Q ss_pred             cCCC--cceecCCCCCccccCCChhHHHHHhh
Q psy14007        158 CGAR--LDIQNKEKKTPLDLLPLPHLAQALTE  187 (198)
Q Consensus       158 ~g~~--~~~~~~~g~t~~~~a~~~~~~~~~~~  187 (198)
                      .|++  ++.+|..|.||+|+|+..|+.++++.
T Consensus       175 ~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          175 EGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             TTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             ccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            8988  67788899999999999999998876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=8.6e-36  Score=198.08  Aligned_cols=154  Identities=29%  Similarity=0.380  Sum_probs=75.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI  113 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  113 (198)
                      |.++|+.|++.|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   87 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH   87 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCc
Confidence            34444444444444444444442 22333333444444444444444444444444444444444444445555555455


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      .+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|.. ++.++++.|...
T Consensus        88 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           88 YEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             HHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            5555555444  33444455555555555555555555555555555555555555555555544 444555555444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=6.4e-36  Score=199.50  Aligned_cols=159  Identities=36%  Similarity=0.448  Sum_probs=150.7

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhc
Q psy14007         32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQ  111 (198)
Q Consensus        32 ~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  111 (198)
                      ...+.++|+.|++.|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      ++.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.++++.|.++
T Consensus        91 ~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           91 GHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            999999999998  668888999999999999999999999999999999999999999999999999999999999876


Q ss_pred             c
Q psy14007        192 V  192 (198)
Q Consensus       192 ~  192 (198)
                      +
T Consensus       169 G  169 (169)
T 2y1l_E          169 N  169 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=7.7e-35  Score=191.75  Aligned_cols=153  Identities=28%  Similarity=0.340  Sum_probs=145.3

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      |.++||+|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            67899999999999999999998 34889999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|++.   .+++..+..|.||||+|+..++.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999986   47888999999999999999999999999874

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=9e-35  Score=195.64  Aligned_cols=163  Identities=33%  Similarity=0.437  Sum_probs=152.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhc
Q psy14007         33 DTNRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQ  111 (198)
Q Consensus        33 ~~g~~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  111 (198)
                      ..+.++|+.|+..|+.+++++|++. +.+++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3577899999999999999999997 667888999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      ++.+++++|+++  +.+++..|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.++++.|.+.
T Consensus        83 ~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           83 GHRDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            999999999998  668889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q psy14007        192 VGDLPE  197 (198)
Q Consensus       192 ~~~~~~  197 (198)
                      +.+++.
T Consensus       161 g~~~~~  166 (179)
T 3f6q_A          161 GQNLNR  166 (179)
T ss_dssp             TCCCSC
T ss_pred             hcCccc
Confidence            988753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.1e-35  Score=210.73  Aligned_cols=161  Identities=23%  Similarity=0.274  Sum_probs=148.7

Q ss_pred             CcchhHHHHHhc---CcHHHHHHHHhCCCCCCCC-----------CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCC
Q psy14007          1 NERLLIHWAALS---GREDVVDFLLKNKSPVDPK-----------DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD   66 (198)
Q Consensus         1 ~g~~~L~~A~~~---g~~~~~~~l~~~~~~~~~~-----------~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~   66 (198)
                      +|+||||+|+..   |+.+++++|++.|++++..           +..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  121 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC  121 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc
Confidence            589999999999   9999999999998776533           36799999999999999999999999999998887


Q ss_pred             C-------------CCcHHHHHHhcChHHHHHHHHh---cCCCCCcCCCCCCcHHHHHHh--cCChH-------HHHHHH
Q psy14007         67 G-------------GHSALQYACSKGWKEIAELLIH---NHANVNIQDVRGATPLHRAAS--QGITP-------VVKLLL  121 (198)
Q Consensus        67 ~-------------~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~--~~~~~-------~~~~l~  121 (198)
                      .             |.||||+|+..|+.+++++|++   .|++++..+..|.||||+|+.  .++.+       ++++|+
T Consensus       122 ~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll  201 (256)
T 2etb_A          122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL  201 (256)
T ss_dssp             SGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH
Confidence            6             9999999999999999999999   999999999999999999999  78888       999999


Q ss_pred             hccCCCCc-------ccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007        122 TQRLDIDV-------NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus       122 ~~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                      ++  |.++       +..|..|.||||+|+..|+.+++++|+++|++..
T Consensus       202 ~~--ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          202 QM--GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HH--HHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             Hc--CCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            98  5566       8899999999999999999999999999987654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1e-35  Score=197.10  Aligned_cols=158  Identities=33%  Similarity=0.382  Sum_probs=149.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC
Q psy14007         34 TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI  113 (198)
Q Consensus        34 ~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  113 (198)
                      ...+|||.|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC-cceecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR-LDIQNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      .+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++ ++.++..|.||+|+|+..++.++++.|.+.+
T Consensus        83 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           83 LDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999998  668889999999999999999999999999999998 5999999999999999999999999999988


Q ss_pred             cC
Q psy14007        193 GD  194 (198)
Q Consensus       193 ~~  194 (198)
                      ++
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=7.4e-35  Score=208.60  Aligned_cols=157  Identities=28%  Similarity=0.374  Sum_probs=150.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKS-PVDPKDDTNRTPLILAA-----AAGKLEIVRLLISNGADVNAKADGGHSALQY   74 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~-~~~~~~~~g~~~L~~A~-----~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~   74 (198)
                      +|+||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|...+..+..|.||||+
T Consensus       110 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~  189 (276)
T 4hbd_A          110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML  189 (276)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            58999999999999999999999998 99999999999999999     6688999999999999988889999999999


Q ss_pred             HHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHh-ccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT-QRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        75 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .  +.+++..|..|.||||+|+..|+.++++
T Consensus       190 A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~--gad~~~~d~~g~TpL~~A~~~g~~~iv~  267 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP--SCDISLTDRDGSTALMVALDAGQSEIAS  267 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTST--TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--CCCCcCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999998 5  7788999999999999999999999999


Q ss_pred             HHHHcC
Q psy14007        154 LLVRCG  159 (198)
Q Consensus       154 ~Ll~~g  159 (198)
                      +|++++
T Consensus       268 ~Ll~~~  273 (276)
T 4hbd_A          268 MLYSRM  273 (276)
T ss_dssp             HHHHHC
T ss_pred             HHHhcc
Confidence            999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=100.00  E-value=4.5e-36  Score=210.77  Aligned_cols=178  Identities=21%  Similarity=0.182  Sum_probs=135.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      .|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            4899999999999999999999999998864 778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCC-CHHHHH--HHhCChhhHHHHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN-TPLHYA--CEEKRLTDAKLLVR  157 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~Ll~  157 (198)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++  +.+++..+..|. ||||.|  +..|+.+++++|++
T Consensus        83 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998  668888887776 999999  78899999999999


Q ss_pred             cCCCccee---------cCCCCCccccCCChhH
Q psy14007        158 CGARLDIQ---------NKEKKTPLDLLPLPHL  181 (198)
Q Consensus       158 ~g~~~~~~---------~~~g~t~~~~a~~~~~  181 (198)
                      +|++++..         +..+.++.+++...|.
T Consensus       161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99887665         5568899999988775

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1e-34  Score=192.88  Aligned_cols=156  Identities=35%  Similarity=0.444  Sum_probs=146.5

Q ss_pred             cchhHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLK-NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      |.++|+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   87 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH   87 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCc
Confidence            6799999999999999999998 456777888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++  +.+++..|..|.||||+|+. ++.+++++|+++|+
T Consensus        88 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999998  66888999999999999777 89999999999886

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.2e-35  Score=197.35  Aligned_cols=160  Identities=28%  Similarity=0.367  Sum_probs=150.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGAD-VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI  113 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  113 (198)
                      +.+|||.|+..|+.+++++|++.+.. ++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999877 78889999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      .+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.++++.|.+.+.
T Consensus        82 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           82 TDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            9999999998  66888999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCC
Q psy14007        194 DLP  196 (198)
Q Consensus       194 ~~~  196 (198)
                      ++.
T Consensus       160 ~~~  162 (172)
T 3v30_A          160 KLF  162 (172)
T ss_dssp             HHS
T ss_pred             HHh
Confidence            543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-35  Score=192.03  Aligned_cols=152  Identities=31%  Similarity=0.365  Sum_probs=144.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCCh
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT  114 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~  114 (198)
                      ..++|+.|++.|+.+++++|++.|++++ .+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            3579999999999999999999998876 588899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        115 PVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      +++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.++++.|+
T Consensus        81 ~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B           81 NIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            999999998  6688899999999999999999999999999999999999999999999999999999998874

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=7.1e-35  Score=206.96  Aligned_cols=161  Identities=25%  Similarity=0.274  Sum_probs=146.5

Q ss_pred             CcchhHHHHH---hcCcHHHHHHHHhCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-
Q psy14007          1 NERLLIHWAA---LSGREDVVDFLLKNKSP-----------VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA-   65 (198)
Q Consensus         1 ~g~~~L~~A~---~~g~~~~~~~l~~~~~~-----------~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-   65 (198)
                      +|+||||+|+   ..|+.+++++|++.|++           .+..+..|.||||+|+..|+.+++++|+++|++++.++ 
T Consensus        45 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  124 (260)
T 3jxi_A           45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR  124 (260)
T ss_dssp             TCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCE
T ss_pred             CCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccc
Confidence            3899999999   77999999999998743           34555689999999999999999999999999999988 


Q ss_pred             -------------CCCCcHHHHHHhcChHHHHHHHHh---cCCCCCcCCCCCCcHHHHHHhcCC---------hHHHHHH
Q psy14007         66 -------------DGGHSALQYACSKGWKEIAELLIH---NHANVNIQDVRGATPLHRAASQGI---------TPVVKLL  120 (198)
Q Consensus        66 -------------~~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~l  120 (198)
                                   ..|.||||+|+..|+.+++++|++   .|++++..+..|.||||+|+..++         .+++++|
T Consensus       125 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~L  204 (260)
T 3jxi_A          125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL  204 (260)
T ss_dssp             ECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             ccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHH
Confidence                         689999999999999999999999   999999999999999999998887         6899999


Q ss_pred             HhccCCCCc-------ccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcc
Q psy14007        121 LTQRLDIDV-------NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD  163 (198)
Q Consensus       121 ~~~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  163 (198)
                      ++++  .++       +..|..|.||||+|+..|+.+++++|+++|++..
T Consensus       205 l~~g--a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          205 LIKC--AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHH--HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhC--cccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            9984  455       6799999999999999999999999999987643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-34  Score=209.59  Aligned_cols=187  Identities=26%  Similarity=0.332  Sum_probs=166.7

Q ss_pred             HHHhcCcHHHHHHHHhCCCCCCC---------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhc
Q psy14007          8 WAALSGREDVVDFLLKNKSPVDP---------KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK   78 (198)
Q Consensus         8 ~A~~~g~~~~~~~l~~~~~~~~~---------~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~   78 (198)
                      .++..++.+.++.++.....+..         .+..|.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID   83 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            46777788888888876654332         233577999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC-------------------------
Q psy14007         79 GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-------------------------  133 (198)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------------------  133 (198)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++.  +++..+                         
T Consensus        84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B           84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999843  443332                         


Q ss_pred             -----------------------------------CCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCC
Q psy14007        134 -----------------------------------AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL  178 (198)
Q Consensus       134 -----------------------------------~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~  178 (198)
                                                         ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~  241 (299)
T 1s70_B          162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH  241 (299)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHh
Confidence                                               457899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhhcccccCCC
Q psy14007        179 PHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~  196 (198)
                      .++.++++.|.+.+.++.
T Consensus       242 ~~~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          242 WGKEEACRILVENLCDME  259 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHHHHHHHcCCCCC
Confidence            999999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-35  Score=214.23  Aligned_cols=183  Identities=18%  Similarity=0.150  Sum_probs=154.8

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh---H
Q psy14007          6 IHWAALSGREDVVDFLLKNKSPVDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW---K   81 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~~~~-~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~---~   81 (198)
                      +|.|+..+..++++.|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+   .
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            4777777788999999999999999 89999999999999999999999999999999999999999999999998   6


Q ss_pred             HHHHHHHhcC-CCCCcCCCCCCcHHHHHHh----cCChHHHHHHHhccC------------------CCCcccCCCCCCC
Q psy14007         82 EIAELLIHNH-ANVNIQDVRGATPLHRAAS----QGITPVVKLLLTQRL------------------DIDVNITDAYGNT  138 (198)
Q Consensus        82 ~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~l~~~~~------------------~~~~~~~~~~g~t  138 (198)
                      ++++.|++.+ .+++..+..|.||||+|++    .|+.+++++|++.+.                  +.+++..+..|.|
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t  260 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  260 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence            7777777765 6788999999999999999    899999999998643                  6688889999999


Q ss_pred             HHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        139 PLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       139 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      |||.|+.      +++|+++  +++.+|..|.||+|+|+..++.++++.|.+.+.++.
T Consensus       261 ~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          261 SILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF  310 (327)
T ss_dssp             HHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT
T ss_pred             hhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            9999985      8999998  688999999999999999999999999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=1.6e-33  Score=185.44  Aligned_cols=153  Identities=29%  Similarity=0.349  Sum_probs=145.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI  113 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  113 (198)
                      +.++|+.|+..|+.+++++|++. +.+++.++..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45899999999999999999998 44888899999999999 99999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      .+++++|+++  +.+++..+..|.||||+|+..|+.+++++|+++ ++++.++..|.||+++|+..++.++++.|.+.
T Consensus        81 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999998  568889999999999999999999999999999 99999999999999999999999999998764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=100.00  E-value=2e-32  Score=176.26  Aligned_cols=134  Identities=28%  Similarity=0.361  Sum_probs=127.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCC-CCc
Q psy14007         25 KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GAT  103 (198)
Q Consensus        25 ~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~~  103 (198)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|+++|++++..+.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            56788899999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007        104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus       104 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      |||+|+..++.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT--CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999998  668889999999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=100.00  E-value=1.1e-32  Score=181.43  Aligned_cols=146  Identities=27%  Similarity=0.313  Sum_probs=116.4

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCc-HHHH
Q psy14007         29 DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGAT-PLHR  107 (198)
Q Consensus        29 ~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~  107 (198)
                      ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .++.+++++|+++|++++..+..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            445678899999999999999999999999999999999999999985 88999999999999999999999998 9999


Q ss_pred             HHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCC
Q psy14007        108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP  177 (198)
Q Consensus       108 a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~  177 (198)
                      |+..|+.+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||.+-+.
T Consensus        85 A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence            9999999999999998  6688889999999999999999999999999999999999999999877543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.98  E-value=4.9e-33  Score=187.89  Aligned_cols=161  Identities=16%  Similarity=0.217  Sum_probs=139.7

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCH----HHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKL----EIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~-~~g~~~L~~A~~~~~~----~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      +.++|+.|++.|+.+.++.+++.+.  +..+ ..|+||||+|+..++.    +++++|+++|++++.++..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4688999999999999999998774  3444 6799999999999975    5999999999999999999999999999


Q ss_pred             hcCh------HHHHHHHHhcCCCCCcCCCCCC-cHHHHHHhcCC-----hHHHHHHHh-ccCCCCcccCCCCCCCHHHHH
Q psy14007         77 SKGW------KEIAELLIHNHANVNIQDVRGA-TPLHRAASQGI-----TPVVKLLLT-QRLDIDVNITDAYGNTPLHYA  143 (198)
Q Consensus        77 ~~~~------~~~~~~l~~~~~~~~~~~~~~~-~~l~~a~~~~~-----~~~~~~l~~-~~~~~~~~~~~~~g~t~l~~a  143 (198)
                      ..++      .+++++|+++|++++.+|..|. ||||+|+..+.     .+++++|++ +  |++++.+|..|.||||+|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~--gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS--GLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST--TCCTTCCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc--CCCCcccCCCCCCHHHHH
Confidence            9886      6889999999999999999999 99999998554     458889998 6  678899999999999999


Q ss_pred             HHhCChhhHHHHHHcCCCcceec
Q psy14007        144 CEEKRLTDAKLLVRCGARLDIQN  166 (198)
Q Consensus       144 ~~~~~~~~~~~Ll~~g~~~~~~~  166 (198)
                      +..++.+++++|.++...++.++
T Consensus       162 ~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHcCCHHHHHHHHHHHHHHhccc
Confidence            99999999999998765554443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.98  E-value=8.5e-33  Score=194.08  Aligned_cols=161  Identities=22%  Similarity=0.206  Sum_probs=119.4

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhc
Q psy14007         32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQ  111 (198)
Q Consensus        32 ~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  111 (198)
                      +..|.||||.|++.++.+.++.|+++|++++. +..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34689999999999999999999999999875 47789999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCC-CccccC--CChhHHHHHhhh
Q psy14007        112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK-TPLDLL--PLPHLAQALTEI  188 (198)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~~~~a--~~~~~~~~~~~l  188 (198)
                      |+.+++++|+++  +.+++..|..|.||||+|+..++.+++++|+++|++++..+..|. ||+|+|  +..++.++++.|
T Consensus        81 g~~~~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           81 GHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             TCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            999999999998  668899999999999999999999999999999999999998877 999999  788999999999


Q ss_pred             cccccCC
Q psy14007        189 EPIVGDL  195 (198)
Q Consensus       189 ~~~~~~~  195 (198)
                      ...+.++
T Consensus       159 l~~~a~~  165 (239)
T 1ycs_B          159 YGVQEKM  165 (239)
T ss_dssp             HHHHHHT
T ss_pred             HHhhhcc
Confidence            8877654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.98  E-value=5.2e-32  Score=178.28  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=119.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCc-HHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHS-ALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t-~l~~a~~~~   79 (198)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .++.+++++|+++|++++.++..|.| |||+|+..+
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence            4789999999999999999999999999999999999999985 89999999999999999999999999 999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHH
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA  143 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a  143 (198)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++  |.+++..+..|.||.+.+
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA--AGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC--C-----------------
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc--CCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999999999999999998  668888999999987743

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.7e-32  Score=188.57  Aligned_cols=162  Identities=24%  Similarity=0.207  Sum_probs=140.8

Q ss_pred             HHHHHhCCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCC
Q psy14007         18 VDFLLKNKSPVDPKD---DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV   94 (198)
Q Consensus        18 ~~~l~~~~~~~~~~~---~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~   94 (198)
                      ++.|+++|.+++..+   .++.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467888888876544   45667899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCC-CCCCCHHHHH--HHhCChhhHHHHHHcCCCcceecCCCCC
Q psy14007         95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYA--CEEKRLTDAKLLVRCGARLDIQNKEKKT  171 (198)
Q Consensus        95 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  171 (198)
                      +..+..|.||||+|+..|+.+++++|++.  +.+++..+ ..|.||||+|  +..++.+++++|+++|++++..+..|.|
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  158 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQH--GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY  158 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence            99999999999999999999999999998  66777776 6899999999  9999999999999999999999999999


Q ss_pred             ccccCCChhH
Q psy14007        172 PLDLLPLPHL  181 (198)
Q Consensus       172 ~~~~a~~~~~  181 (198)
                      |++.+.....
T Consensus       159 ~l~~~~~~~~  168 (229)
T 2vge_A          159 ALWDYSAEFG  168 (229)
T ss_dssp             ESSCBCCSST
T ss_pred             HHHHHhhccc
Confidence            9996665543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=1.9e-30  Score=166.97  Aligned_cols=121  Identities=39%  Similarity=0.494  Sum_probs=69.2

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |.+|||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~   93 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL   93 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHh
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT  122 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~  122 (198)
                      +++++|+++|++++..+..|.||+++|+..++.+++++|++
T Consensus        94 ~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           94 EIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            55555555555555555555555555555555555555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=2.5e-30  Score=164.05  Aligned_cols=123  Identities=47%  Similarity=0.678  Sum_probs=83.9

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      ||+||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            56777777777777777777777777777777777777777777777777777777776666666666666666666666


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ  123 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  123 (198)
                      .+++++|+++|++++..+..|.||+++|+..++.+++++|+++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            6666666666666666666666666666666666666666655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=5e-31  Score=169.72  Aligned_cols=123  Identities=20%  Similarity=0.297  Sum_probs=119.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCC-CCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG-GHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~-~~t~l~~a~~~~   79 (198)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. ++.+++++|+++|++++.++.. |.||||+|+..+
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~   89 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcC
Confidence            48899999999999999999999999999999999999999999 9999999999999999999999 999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhcc
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR  124 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  124 (198)
                      +.+++++|+++|++++..+..|.||+|+|+..++.+++++|++++
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           90 FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             CHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=5.8e-30  Score=162.33  Aligned_cols=126  Identities=48%  Similarity=0.693  Sum_probs=121.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCC
Q psy14007         34 TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI  113 (198)
Q Consensus        34 ~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~  113 (198)
                      +|.||||+|++.|+.+++++|++++++++.++..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      .+++++|+++  +.+++..+..|.||||+|+..++.+++++|+++|+|
T Consensus        81 ~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999998  667888999999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.97  E-value=6e-30  Score=164.83  Aligned_cols=135  Identities=30%  Similarity=0.320  Sum_probs=103.8

Q ss_pred             CCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCC
Q psy14007         59 ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNT  138 (198)
Q Consensus        59 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t  138 (198)
                      +++ .++..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.|
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t   78 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDS   78 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCC
Confidence            444 4566677777777777777777777777777777777777777777777777777777776  5567778888999


Q ss_pred             HHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        139 PLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       139 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      |||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++.+.......+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~~  136 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA  136 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccCCC
Confidence            9999999999999999999999999999999999999999999999999888766543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.97  E-value=2.6e-30  Score=181.90  Aligned_cols=141  Identities=26%  Similarity=0.296  Sum_probs=130.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~   79 (198)
                      +|+||||+|+..|+.+++++|++ |.+++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            37899999999999999999999 99999999999999999999999999999999999999888 78999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      +.+++++|+++|++++..+..|.||+|+|+..+.                   ...+.|||++|+..|+.+++++|++++
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            9999999999999999999999999999985211                   145789999999999999999999875


Q ss_pred             CC
Q psy14007        160 AR  161 (198)
Q Consensus       160 ~~  161 (198)
                      .+
T Consensus       184 ~~  185 (244)
T 3ui2_A          184 FE  185 (244)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=1.1e-29  Score=163.38  Aligned_cols=127  Identities=37%  Similarity=0.485  Sum_probs=117.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHh
Q psy14007         31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS  110 (198)
Q Consensus        31 ~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  110 (198)
                      ....+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007        111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      .++.+++++|+++  +.+++..|..|.||||+|+..++.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999998  6688889999999999999999999999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.97  E-value=9.4e-30  Score=171.69  Aligned_cols=137  Identities=28%  Similarity=0.321  Sum_probs=125.3

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~   80 (198)
                      |+||||+|+..|+.+++++|++ |.+++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..++
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~  122 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  122 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCc
Confidence            6899999999999999999999 99999999999999999999999999999999999999888 789999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+++++|+++|++++.++..|.||+|+|+..++.                   ..+.+||++|+..|..+++++|.++
T Consensus       123 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          123 PEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999863221                   2356999999999999999999865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=1.5e-31  Score=180.63  Aligned_cols=156  Identities=19%  Similarity=0.155  Sum_probs=139.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCcHHHHHHhcChH----HHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKGWK----EIAELLIHNHANVNIQDVRGATPLHRAA  109 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~l~~a~  109 (198)
                      +.++|+.|++.|+.+.++.+++.+.+  .++ ..|.||||+|+..++.    +++++|+++|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            45789999999999999999987654  344 6799999999999864    5999999999999999999999999999


Q ss_pred             hcCC------hHHHHHHHhccCCCCcccCCCCCC-CHHHHHHHhC-----ChhhHHHHHH-cCCCcceecCCCCCccccC
Q psy14007        110 SQGI------TPVVKLLLTQRLDIDVNITDAYGN-TPLHYACEEK-----RLTDAKLLVR-CGARLDIQNKEKKTPLDLL  176 (198)
Q Consensus       110 ~~~~------~~~~~~l~~~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~g~t~~~~a  176 (198)
                      ..+.      .+++++|+++  |++++..|..|. ||||+|+..+     ..+++++|++ +|++++.+|..|.||+|+|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            9887      5789999998  678999999999 9999999944     3568999999 9999999999999999999


Q ss_pred             CChhHHHHHhhhcccccC
Q psy14007        177 PLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~  194 (198)
                      ...++.++++.|..+..+
T Consensus       162 ~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            999999999999887653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=7.5e-33  Score=205.17  Aligned_cols=169  Identities=17%  Similarity=0.127  Sum_probs=139.5

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc---cccCCCCCcHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISNGADV---NAKADGGHSALQY   74 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~---~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~---~~~~~~~~t~l~~   74 (198)
                      +++||||+|+..|+.+++++|+++|...   +..+..|.||||+|+..|+.+++++|+++|+++   +..+.. .||||+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            3579999999999999999999998732   234456789999999999999999999999752   222223 899999


Q ss_pred             HHhcChHHHHHHHHhcCCCCCc--CCCCCCcHHHHHH-hcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhh
Q psy14007         75 ACSKGWKEIAELLIHNHANVNI--QDVRGATPLHRAA-SQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD  151 (198)
Q Consensus        75 a~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  151 (198)
                      |+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.+  .       .|.||||.|+..|+.++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g--a-------~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--V-------MLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH--H-------HHHHHHHCTTTTTTTTH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC--C-------ccchHHHHHHHCCCHHH
Confidence            9999999999999999999877  7888999999999 999999999999863  2       27899999999999999


Q ss_pred             HHHHHHcCCCcceecCCCCCccccCCChhHHH
Q psy14007        152 AKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQ  183 (198)
Q Consensus       152 ~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~  183 (198)
                      +++|+++|++++..+.    +++.|+..|..+
T Consensus       241 v~lL~~~ga~~~~~~~----~l~~A~~~g~~~  268 (376)
T 2aja_A          241 NPFIARHVNRLKEMHD----AFKLSNPDGVFD  268 (376)
T ss_dssp             HHHHHHHHHHHHHHHT----TTTTTSSSSCCC
T ss_pred             HHHHHhcCcccccccH----HHHHHHHCCChh
Confidence            9999999998876653    566666555544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=1.3e-29  Score=163.32  Aligned_cols=132  Identities=30%  Similarity=0.434  Sum_probs=97.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcH
Q psy14007         25 KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP  104 (198)
Q Consensus        25 ~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  104 (198)
                      |+++ ..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4455 566777788888888888888888888777777777777888888888888888888888887777777777888


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007        105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus       105 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      ||+|+..++.+++++|+++  +.+++..|..|.||+|+|+..+..+++++|.+.+
T Consensus        80 L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            8888888888888888776  5567777777888888887777777776666544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.96  E-value=1.4e-28  Score=155.57  Aligned_cols=108  Identities=27%  Similarity=0.359  Sum_probs=87.6

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |.++||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~   86 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   86 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            56788888888888888888888888888888888888888888888888888888888877788888888888888888


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRAA  109 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~  109 (198)
                      +++++|+++|++++..+..|.||+++|.
T Consensus        87 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           87 SCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            8888888888888777888888888773

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.96  E-value=1.9e-30  Score=175.09  Aligned_cols=140  Identities=26%  Similarity=0.304  Sum_probs=128.9

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHh
Q psy14007         32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAAS  110 (198)
Q Consensus        32 ~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~  110 (198)
                      +..|.||||+|+..|+.+++++|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3478899999999999999999999 99999999999999999999999999999999999999888 889999999999


Q ss_pred             cCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcc
Q psy14007        111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEP  190 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~  190 (198)
                      .|+.+++++|+++  +.+++..|..|.||||+|+..++.                 ..+.+|+++|+..+..++++.|..
T Consensus       120 ~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVEL--GADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHc--CCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            9999999999998  668889999999999999985433                 456899999999999999999876


Q ss_pred             c
Q psy14007        191 I  191 (198)
Q Consensus       191 ~  191 (198)
                      .
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=176.58  Aligned_cols=143  Identities=22%  Similarity=0.188  Sum_probs=125.2

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc------cCCCCCcHHHHHHhc---ChHHHHHHHHhcCCCCCcCCCCCC
Q psy14007         32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNA------KADGGHSALQYACSK---GWKEIAELLIHNHANVNIQDVRGA  102 (198)
Q Consensus        32 ~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~------~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~  102 (198)
                      .....++|+.|+..++.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++..+..|.
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34567899999999999999999999999887      588999999999997   899999999999999999999999


Q ss_pred             cHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHH
Q psy14007        103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA  182 (198)
Q Consensus       103 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~  182 (198)
                      ||||+|+..|+.+++++|++.  |++++..|..|.||||+|+..++.+++++|+++|++      .|.||+|+|+..|..
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999998  668889999999999999999999999999999987      589999999988764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=174.05  Aligned_cols=137  Identities=23%  Similarity=0.201  Sum_probs=90.2

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCCCC------CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPVDP------KDDTNRTPLILAAAA---GKLEIVRLLISNGADVNAKADGGHSALQY   74 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~~~------~~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~   74 (198)
                      ++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            457777777777777777777776665      466677777777765   66777777777777777777777777777


Q ss_pred             HHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCC
Q psy14007         75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR  148 (198)
Q Consensus        75 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~  148 (198)
                      |+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|++.+.  +      .|.||||+|+..|+
T Consensus       233 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga--~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA--G------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH--H------TTSSCCC-------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC--C------CCCChhHHHHhcCC
Confidence            777777777777777777777777777777777777777777777776532  1      35677777766654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=1.1e-27  Score=151.43  Aligned_cols=120  Identities=23%  Similarity=0.259  Sum_probs=90.9

Q ss_pred             CCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHH
Q psy14007         65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC  144 (198)
Q Consensus        65 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~  144 (198)
                      +..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.  +.+++..|..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777776  5566777788888888888


Q ss_pred             HhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHh
Q psy14007        145 EEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT  186 (198)
Q Consensus       145 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~  186 (198)
                      ..++.+++++|+++|++++.+|..|.||+++|...+..++++
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll~  123 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ  123 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHhC
Confidence            888888888888888888888888888888887777766653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=2.4e-28  Score=169.58  Aligned_cols=135  Identities=28%  Similarity=0.376  Sum_probs=79.9

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhc-CCCCCcCCCCCCcHHHHHHh
Q psy14007         32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN-HANVNIQDVRGATPLHRAAS  110 (198)
Q Consensus        32 ~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~  110 (198)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            34456666666666666666666666666666666666666666666666666666666 66666666666666666666


Q ss_pred             cCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCC
Q psy14007        111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE  168 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  168 (198)
                      .|+.+++++|+++  |.+++..+..|.||||+|+..++.++++.|++.|++....+..
T Consensus       150 ~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          150 KGYADIVQLLLAK--GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             HTCHHHHHHHHHH--TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             cCCHHHHHHHHHc--CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence            6666666666666  4456666666667777766666666666666666666555543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=5.5e-31  Score=195.21  Aligned_cols=174  Identities=14%  Similarity=0.004  Sum_probs=144.5

Q ss_pred             hhHHHHHh-cCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc---cccCCCCCcHHHHHHhcC
Q psy14007          4 LLIHWAAL-SGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV---NAKADGGHSALQYACSKG   79 (198)
Q Consensus         4 ~~L~~A~~-~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~---~~~~~~~~t~l~~a~~~~   79 (198)
                      +++++|.. .++.+++++++++|.+       +.||||+|++.|+.+++++|++.|+..   +..+..+.||||+|+..|
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G  139 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG  139 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC
Confidence            46777776 5788999999988764       359999999999999999999998732   233446789999999999


Q ss_pred             hHHHHHHHHhcCCCC---CcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCccc--CCCCCCCHHHHHH-HhCChhhHH
Q psy14007         80 WKEIAELLIHNHANV---NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNI--TDAYGNTPLHYAC-EEKRLTDAK  153 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~  153 (198)
                      +.+++++|+++|++.   +..+.. .||||+|+..|+.+++++|+++  +.+++.  .+..|.||||+|+ ..|+.++++
T Consensus       140 ~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~--ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          140 HLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL--APTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             CHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc--CCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            999999999999752   222233 8999999999999999999998  446555  7778999999999 999999999


Q ss_pred             HHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        154 LLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       154 ~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      +|+++|++       |.||++.|+..|+.++++.|.+.+.+
T Consensus       217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            99998752       78999999999999999999887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=2.6e-28  Score=169.38  Aligned_cols=128  Identities=29%  Similarity=0.326  Sum_probs=72.0

Q ss_pred             CCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHH
Q psy14007         65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC  144 (198)
Q Consensus        65 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~  144 (198)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.. +.+++..|..|.||||+|+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHHHHH
Confidence            344556666666666666666666666666655556666666666666666666665541 3345555555666666666


Q ss_pred             HhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        145 EEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       145 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      ..|+.+++++|+++|++++.+|..|.||+++|+..+..++++.+...+.
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            6666666666666666666666666666666666666666655555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=1.3e-26  Score=171.34  Aligned_cols=120  Identities=28%  Similarity=0.337  Sum_probs=64.1

Q ss_pred             hhHHHHHhc-CcHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          4 LLIHWAALS-GREDVVDFLLKNKSPVDPKD--DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         4 ~~L~~A~~~-g~~~~~~~l~~~~~~~~~~~--~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      ++||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  280 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH  280 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc
Confidence            455555555 55555555555555555444  445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhc
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ  123 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  123 (198)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+..
T Consensus       281 ~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            5555555555555555555555555555555555555555443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=2.5e-27  Score=166.66  Aligned_cols=139  Identities=26%  Similarity=0.314  Sum_probs=128.7

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhc
Q psy14007         33 DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQ  111 (198)
Q Consensus        33 ~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~  111 (198)
                      ..|.||||+|++.|+.+++++|++ +++++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468899999999999999999999 99999999999999999999999999999999999999988 7899999999999


Q ss_pred             CChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      |+.+++++|+++  +.+++..|..|.||||+|+..++.                 ..+.||+++|+..+..++++.|...
T Consensus       122 g~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~~~~~-----------------~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          122 VRPEVVEALVEL--GADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHHTT-----------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHHHhc-----------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence            999999999998  668889999999999999864322                 5689999999999999999998875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=2.1e-26  Score=138.43  Aligned_cols=93  Identities=44%  Similarity=0.652  Sum_probs=86.4

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      ||+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy14007         81 KEIAELLIHNHAN   93 (198)
Q Consensus        81 ~~~~~~l~~~~~~   93 (198)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.94  E-value=5.9e-25  Score=157.25  Aligned_cols=132  Identities=22%  Similarity=0.253  Sum_probs=106.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcc------ccCCCCCcHHHHHHhc---ChHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVN------AKADGGHSALQYACSK---GWKEIAELLIHNHANVNIQDVRGATPLHR  107 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~------~~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  107 (198)
                      ++|+.|+..++.+.++.+++.|.+++      ..+..|.||||+|+..   ++.+++++|+++|++++..+..|.||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            47888888888888888888887743      3467788888888888   78888888888888888888888888888


Q ss_pred             HHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCC
Q psy14007        108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL  178 (198)
Q Consensus       108 a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~  178 (198)
                      |+..|+.+++++|+++  |++++..|..|.||||+|+..|+.+++++|+++|++        .+++|.+..
T Consensus       212 A~~~g~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--------~~~~~~~v~  272 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG--------RFNSHVHVE  272 (278)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT--------CCCSSCCCC
T ss_pred             HHHcCCHHHHHHHHHc--CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------CCCcceeee
Confidence            8888888888888886  567788888888888888888888888888888774        455555544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.93  E-value=1.3e-25  Score=166.00  Aligned_cols=145  Identities=28%  Similarity=0.275  Sum_probs=117.9

Q ss_pred             CCCCHHHHHHHc-CCHHHHHHHHhcCCCccccC--CCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHh
Q psy14007         34 TNRTPLILAAAA-GKLEIVRLLISNGADVNAKA--DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS  110 (198)
Q Consensus        34 ~g~~~L~~A~~~-~~~~~~~~L~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  110 (198)
                      .+.++||.|+.. ++.+++++|+++|++++..+  ..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            345799999999 99999999999999999888  789999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC---CCcceecCCCCCccccCCChh
Q psy14007        111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG---ARLDIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~~~~a~~~~  180 (198)
                      .|+.+++++|+++  +++++..|..|.||||+|+..++.+++++|+..+   ++....+..+.|+++++....
T Consensus       278 ~g~~~~v~~LL~~--Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          278 LGHTGLACLFLKR--GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             cCcHHHHHHHHHC--cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            9999999999998  6688899999999999999999999999999876   334456667888888887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=8.4e-25  Score=156.43  Aligned_cols=122  Identities=22%  Similarity=0.264  Sum_probs=115.8

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPV------DPKDDTNRTPLILAAAA---GKLEIVRLLISNGADVNAKADGGHSALQY   74 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~------~~~~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~   74 (198)
                      ++|+.|+..|+.+.++.+++.|.++      +..+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            5799999999999999999999984      44578899999999999   89999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccC
Q psy14007         75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL  125 (198)
Q Consensus        75 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  125 (198)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++.
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999854

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.92  E-value=1.7e-25  Score=139.71  Aligned_cols=107  Identities=37%  Similarity=0.493  Sum_probs=60.5

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHh
Q psy14007         31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS  110 (198)
Q Consensus        31 ~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  110 (198)
                      .|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555655555


Q ss_pred             cCChHHHHHHHhccCCCCcccCCCCCCCH
Q psy14007        111 QGITPVVKLLLTQRLDIDVNITDAYGNTP  139 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~g~t~  139 (198)
                      .++.+++++|+++  |++++..+..|.+|
T Consensus        85 ~~~~~~~~~Ll~~--ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAK--GADVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTT--SSSHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHc--CCCCCcCCcccccc
Confidence            5555555555555  44555555555544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=7.2e-24  Score=127.30  Aligned_cols=89  Identities=51%  Similarity=0.730  Sum_probs=49.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCCh
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT  114 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~  114 (198)
                      |.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||+|+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhc
Q psy14007        115 PVVKLLLTQ  123 (198)
Q Consensus       115 ~~~~~l~~~  123 (198)
                      +++++|+++
T Consensus        82 ~~~~~Ll~~   90 (93)
T 1n0q_A           82 EVVKLLLEA   90 (93)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            555555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=1.6e-24  Score=135.20  Aligned_cols=110  Identities=33%  Similarity=0.406  Sum_probs=101.7

Q ss_pred             ccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHH
Q psy14007         63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHY  142 (198)
Q Consensus        63 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~  142 (198)
                      .+|..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++  +.+++..+..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence            4688999999999999999999999999999999999999999999999999999999998  66888899999999999


Q ss_pred             HHHhCChhhHHHHHHcCCCcceecCCCCCccc
Q psy14007        143 ACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD  174 (198)
Q Consensus       143 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~  174 (198)
                      |+..++.+++++|+++|++++.++..|.+|..
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~~  113 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHHH  113 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC----
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCcccccccc
Confidence            99999999999999999999999999998853

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=3.7e-22  Score=123.49  Aligned_cols=86  Identities=38%  Similarity=0.541  Sum_probs=43.7

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      |+++||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  103 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE  103 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCH
Confidence            44455555555555555555555555554455555555555555555555555555555544444555555555555555


Q ss_pred             HHHHHH
Q psy14007         82 EIAELL   87 (198)
Q Consensus        82 ~~~~~l   87 (198)
                      +++++|
T Consensus       104 ~~~~~L  109 (110)
T 2zgd_A          104 DLAEIL  109 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            544443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=6.3e-21  Score=117.88  Aligned_cols=92  Identities=33%  Similarity=0.454  Sum_probs=65.6

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q psy14007         29 DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA  108 (198)
Q Consensus        29 ~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  108 (198)
                      ...+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34456677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhcCChHHHHHH
Q psy14007        109 ASQGITPVVKLL  120 (198)
Q Consensus       109 ~~~~~~~~~~~l  120 (198)
                      +..++.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-36
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-28
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-25
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-15
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-08
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-07

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 7e-36
 Identities = 58/201 (28%), Positives = 78/201 (38%), Gaps = 35/201 (17%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H A+  G   +V  LL+  +  +  +    TPL +AA AG  E+ + L+ N A VNAKA
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANV------------------------------- 94
               + L  A   G   + +LL+ N+AN                                
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 95  --NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
                  +G TPLH AA  G   V +LLL +  D   N     G TPLH A     L   
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLER--DAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 153 KLLVRCGARLDIQNKEKKTPL 173
           KLL+  G           TPL
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPL 202

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-31
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA  G+  V + LL+  +  +       TPL +A     L+IV+LL+  G   ++ A
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 195

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G++ L  A  +   E+A  L+    + N + V+G TPLH AA +G   +V   L    
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA--LLLSK 253

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
             + N+ +  G TPLH   +E  +  A +L++ G  +D   +   TPL
Sbjct: 254 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 3e-30
 Identities = 49/170 (28%), Positives = 67/170 (39%), Gaps = 31/170 (18%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
           TPL +A+  G L IV+ L+  GA  N       + L  A   G  E+A+ L+ N A VN 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDI----------------------------- 127
           +     TPLH AA  G T +VKLLL    +                              
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 128 --DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
                     G TPLH A +  ++  A+LL+   A  +   K   TPL +
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV 171

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 4e-29
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA  G  ++V  LL  ++  +  + +  TPL L A  G + +  +LI +G  V+A  
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 294

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
             G++ L  A   G  ++ + L+ + A+VN +   G +PLH+AA QG T +V LLL    
Sbjct: 295 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-- 352

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC---GARLDIQNKEKKT 171
               N   + G TPL  A     ++   +L       + + + +K + +
Sbjct: 353 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-27
 Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 35/203 (17%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-------- 57
           +H AA +G  +V  +LL+NK+ V+ K   ++TPL  AA  G   +V+LL+ N        
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 58  -------------------------GADVNAKADGGHSALQYACSKGWKEIAELLIHNHA 92
                                     A        G + L  A   G   +AELL+   A
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156

Query: 93  NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
           + N     G TPLH A       +VKLLL +      +     G TPLH A ++ ++  A
Sbjct: 157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAAKQNQVEVA 214

Query: 153 KLLVRCGARLDIQNKEKKTPLDL 175
           + L++ G   + ++ +  TPL L
Sbjct: 215 RSLLQYGGSANAESVQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 4e-27
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 31/206 (15%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           N    +H A      D+V  LL              TPL +AA   ++E+ R L+  G  
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 223

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
            NA++  G + L  A  +G  E+  LL+   AN N+ +  G TPLH  A +G  PV  +L
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 121 LTQRLDIDV-------------------------------NITDAYGNTPLHYACEEKRL 149
           +   + +D                                N     G +PLH A ++   
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
               LL++ GA  +  + +  TPL +
Sbjct: 344 DIVTLLLKNGASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 1e-23
 Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 2/167 (1%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
           H AA  G  + V  LL+ ++          TPL +AA  GK+ +  LL+   A  NA   
Sbjct: 104 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 163

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
            G + L  A      +I +LL+    + +     G TPLH AA Q    V + LL     
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-- 221

Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
              N     G TPLH A +E       LL+   A  ++ NK   TPL
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-29
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 27  PVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYAC----SKGWK 81
             +       T L+ AA  G +E++++L+   GADVNA  + G +AL +A         +
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199

Query: 82  EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLH 141
            I  LL+ + A+VN++  RG TPL  A  +    +V+ LL Q   I++N TD+ G T L 
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALL 258

Query: 142 YACEEKRLTDAKLLVRCGARLDIQN 166
            A E K    A+LL + GA  D  +
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 7e-23
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 6   IHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGK----LEIVRLLISNGAD 60
           +  AA  G  +V+  LL    + V+  D+  R  LI A  +        I  LL+ +GAD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 61  VNAKADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKL 119
           VN + + G + L  A  K    + + L+   H  +N  D  G T L  A    +  + +L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 120 LLTQRLDIDVNITD 133
           L  +      +  D
Sbjct: 272 LCKR--GASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 4e-19
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 15  EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGHSALQ 73
           E +   LL + + V+ + +  +TPLILA     L +V+ L+     ++N     G +AL 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 74  YACSKGWKEIAELLIHNHANVNIQDV 99
            A     K+IAELL    A+ +  D+
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 3e-18
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 14/183 (7%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-- 64
             AA++G   ++   L   + V+  D    T  + AA  GK++ ++ L   GA+VN +  
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

Query: 65  --------ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITP 115
                     GG +AL  A  KG  E+ ++L+    A+VN  D  G   L  A       
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 116 VVKLLLTQRLD--IDVNITDAYGNTPLHYACEEKRLTDAK-LLVRCGARLDIQNKEKKTP 172
            V+ +    LD   DVN+    G TPL  A E+K L   + LL +    ++  + + KT 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 173 LDL 175
           L L
Sbjct: 257 LLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 3e-18
 Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 49/219 (22%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLI-------- 55
           L+  A  +   D+V  LL+  + V+ +++    TPL  A    + +IV LL+        
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 56  -------------------------SNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
                                    S GADVN     G +A   A   G  +  + L   
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 91  HANVNIQDVR----------GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
            ANVN++             GAT L  AA +G   V+K+LL +    DVN  D  G   L
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNAL 186

Query: 141 HYACEEKRLTDA----KLLVRCGARLDIQNKEKKTPLDL 175
            +A      +D      LL+  GA ++++ +  KTPL L
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 4e-16
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 43/177 (24%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGADVNAKAD-GGHSALQYACSKGWKEIAELLIHNHA- 92
           +   LI A     +++V+ L+  GA+VN + + GG + L  A     ++I ELL+ + A 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 93  --------------------------------NVNIQDVRGATPLHRAASQGITPVVKLL 120
                                           +VN  D  G T    AA  G    +K L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 121 LTQRLDID--------VNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKE 168
             +  +++               G T L  A E+  +   K+L+   GA ++  +  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 99  VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
           V     L +A       +V+ LL    +++    +  G TPLH A +  R    +LL+R 
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE-KKTPL 173
            N  L  A + + +   + L+  GA ++ Q +E   TPL
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL 43

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-28
 Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 36/206 (17%)

Query: 4   LLIHWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLE------------- 49
           L++   A SG+ E++ + +L +KS     D  +RT L  A +AG  E             
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 50  --------------------IVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIH 89
                               IV+ L+  GA VNA    G + L YA SK   EIA +L+ 
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 90  NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRL 149
             AN + +D   AT +HRAA++G   ++ +L         NI D  GNTPLH AC+E+R+
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHIL--LYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
            +AKLLV  GA + I+NKE+KTPL +
Sbjct: 183 EEAKLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.6 bits (234), Expect = 8e-25
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 3/151 (1%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA +GR+++V  LL   + V+  +    TPL  AA+  + EI  +L+  GA+ +AK 
Sbjct: 74  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 133

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
               +A+  A +KG  ++  +L++  A+ NIQD  G TPLH A  +      KLL++Q  
Sbjct: 134 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-- 191

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
              + I +    TPL  A +       K +V
Sbjct: 192 GASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (224), Expect = 9e-23
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVD-PKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
           + +   H +  S  ++V D     +  ++ P D+   TPL    +   LE+V+ L+ +G+
Sbjct: 72  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 131

Query: 60  DVNAK-----------------------------------------ADGGHSALQYACSK 78
           +                                                 H  +  +   
Sbjct: 132 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 191

Query: 79  GWKEIAE---------LLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL-DID 128
           G    A+         ++   +  +        +  +    +    +++ L  + +    
Sbjct: 192 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 251

Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
           +N  D+ G+T L+ A     ++    L+  GA   I NK    P+D
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.5 bits (179), Expect = 2e-16
 Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 55/191 (28%)

Query: 6   IHWAALSGREDVVDFLLKN-------------------------------------KSPV 28
           +HW       ++V  L+K+                                        +
Sbjct: 111 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 170

Query: 29  DPKDDTNRTPLILAAAAGKLE-------------IVRLLISNGADVNAKADGGHSALQYA 75
             +D  NRT L        +              +  ++      + +  +   S     
Sbjct: 171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 230

Query: 76  CSKGWKEIAELLIHNH---ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNIT 132
             +    I E L         +N QD  G T L+ AA  G   +V  LL      D  I 
Sbjct: 231 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG--ADPFIA 288

Query: 133 DAYGNTPLHYA 143
           +  G  P+ + 
Sbjct: 289 NKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 4e-13
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 7   HWAALSGREDVVDFLLK-NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN---GADVN 62
             AA    + ++ +++K    P+    +   +         K  I+  L         +N
Sbjct: 194 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 253

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA 109
           A+   G + L  A   G   I + L+   A+  I +  G  P+   A
Sbjct: 254 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 4e-12
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 1   NERLLIHWAALSGREDVVDFLLKN---KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN 57
            +    +      ++ +++ L       + ++ +D    T L +AA  G + IV  L+  
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 281

Query: 58  GADVNAKADGGHSALQYA 75
           GAD       G   + + 
Sbjct: 282 GADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAA 43
           ++ AA  G   +VD LL   +     + +   P+   A
Sbjct: 263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 86.9 bits (214), Expect = 5e-21
 Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 6/174 (3%)

Query: 16  DVVDFLLKNKSPVDPKDDTNRTPLILAAAAG---KLEIVRLLISNGADVNAKADGGHSAL 72
                  +  S    K   +     +AA  G    L+ + LL+++   V       + A 
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF 130

Query: 73  QYACSKGWKEIAELLIHNHANVNIQDVR--GATPLHRAASQGITPVVKLLLTQRLDIDVN 130
           + A   G   +   L        +  ++         AA  G   V+  L          
Sbjct: 131 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

Query: 131 ITDAYGNTPLHYACEEKRLTD-AKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQ 183
           +  A       +A   +   +    L+ C   L      +    +    P +A+
Sbjct: 191 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 244

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.9 bits (209), Expect = 2e-20
 Identities = 26/178 (14%), Positives = 41/178 (23%), Gaps = 16/178 (8%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA- 63
           LI W           F+  N+  +          + L       ++ +LL    A  N  
Sbjct: 18  LIPWILWENL--FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRN 75

Query: 64  ----------KADGGHSALQYACSKGWK---EIAELLIHNHANVNIQDVRGATPLHRAAS 110
                     K          A   G     +   LL+ +   V +           AA 
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
            G   V+  L        + +  A        A E   L     L            +
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.2 bits (202), Expect = 2e-19
 Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 17/170 (10%)

Query: 1   NERLLIHWAALSGREDVVD---FLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN 57
              ++   AA++G    +D    LL +   V      N     LAA  G L ++  L   
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 58  GADVNAK--ADGGHSALQYACSKGWKEIAELLIHNHANVN---IQDVRGATPLHRAASQG 112
                        + A + A   G   +   L           IQ          A  +G
Sbjct: 149 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 208

Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL 162
              V+  LL   + +              +  E         + R   RL
Sbjct: 209 HHNVINFLLDCPVML---------AYAEIHEFEYGEKYVNPFIARHVNRL 249

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 78.8 bits (193), Expect = 4e-18
 Identities = 25/196 (12%), Positives = 51/196 (26%), Gaps = 20/196 (10%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDT--NRTPLILAAAAGKLEIVRLLISNGADVN- 62
              AA +G   V++ L +             N     LAA  G L ++  L         
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 63  --AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQ-------GI 113
              +A+  ++    A  +G   +   L+     +   ++       +  +         +
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 249

Query: 114 TPVVKLLL-------TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
             +               +     +   Y    L    +E  L D + L+       +  
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 167 KEKKTPLDLLPLPHLA 182
                      L  LA
Sbjct: 310 TATIPGDANELL-RLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.5 bits (161), Expect = 7e-14
 Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 20/157 (12%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
              A   G  +V++FLL     +           I     G+  +   +  +   +    
Sbjct: 201 RWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLKE-- 251

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ-- 123
              H A + +   G  ++         +  +Q       L R   + +   ++ LL+   
Sbjct: 252 --MHDAFKLSNPDGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 303

Query: 124 -RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
            +            N  L  A          LL+   
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 9e-10
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
               +   G  D+V            +       LI       L+ +R L+S        
Sbjct: 255 AFKLSNPDGVFDLVTKS------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 308

Query: 65  ADG-----GHSALQYACSKGWKEIAELLI 88
                    +  L+ A   G +    LL+
Sbjct: 309 PTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 6/63 (9%)

Query: 6   IHWAALSGREDVVDFLL-----KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
           +         D + FLL     K  +P           L LA   G      LL+S    
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-S 341

Query: 61  VNA 63
           V A
Sbjct: 342 VLA 344

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.5 bits (197), Expect = 5e-19
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 54  LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
           L S   +    A  G +AL  A +KG+ E+ +LLI    +VNI+D  G TPLH AA  G 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
               ++L+      D+   +  G T    A E+        L     + ++ +
Sbjct: 245 EEACRILVENL--CDMEAVNKVGQTAFDVADEDIL----GYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 76.7 bits (187), Expect = 1e-17
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 17  VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
              +L            +  T L +AAA G  E+++LLI    DVN K   G + L  A 
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240

Query: 77  SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
             G +E   +L+ N  ++   +  G T    A       ++  L 
Sbjct: 241 HWGKEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.9 bits (172), Expect = 2e-15
 Identities = 27/82 (32%), Positives = 39/82 (47%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +H AA  G  +V+  L++ +  V+ KD    TPL  AA  GK E  R+L+ N  D+ A  
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 66  DGGHSALQYACSKGWKEIAELL 87
             G +A   A       + EL 
Sbjct: 263 KVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.4 bits (163), Expect = 2e-14
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 74  YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
                  ++  + L   H N       G T LH AA++G T V+KLL   +   DVNI D
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKD 229

Query: 134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             G TPLH A    +    ++LV     ++  NK  +T  D+
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 9e-12
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 10  ALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGH 69
              G E  ++  +  +     K D +    + A ++G  E V  L+  GAD+N     G 
Sbjct: 16  RWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANVDGL 74

Query: 70  SALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
           +AL  AC     ++ + L+ N AN+N  D  G  PLH AAS G   + + L        V
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL--ISQGAHV 132

Query: 130 NITDAYGNTPLHYACEE 146
              ++ G+TPL  A EE
Sbjct: 133 GAVNSEGDTPLDIAEEE 149

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 25/196 (12%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           +   A  SG  + V  LL+  + ++  +    T L  A     +++V+ L+ NGA++N  
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT-- 122
            + G   L  A S G+ +IAE LI   A+V   +  G TPL  A  + +  +++  +   
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 123 -----------------------QRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
                                      I+       G T LH A  +      KLL++  
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

Query: 160 ARLDIQNKEKKTPLDL 175
             ++I++ +  TPL  
Sbjct: 223 YDVNIKDYDGWTPLHA 238

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
                  AC      +   L+  GA ++  N +  T L  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.4 bits (181), Expect = 8e-17
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           L + A +S    V   + +  S  D +D+  +TP++LAA  G++E+V  LI  GA V A 
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250

Query: 65  ADGGHSALQYACSKGWKEIAELLI 88
               H+A Q A +     I ++  
Sbjct: 251 DATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.4 bits (168), Expect = 5e-15
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 55  ISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH-ANVNIQDVRGATPLHRAASQGI 113
               A  +++   G +AL YA       I + L+    +N + QD  G TP+  AA +G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
             VV  L+ Q     V   DA  +T    A          +  RC
Sbjct: 234 IEVVMYLIQQG--ASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.0 bits (167), Expect = 7e-15
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGHSALQYACSKGWKEIAEL 86
            D +    RT L  AA    + IV+ L+   G++ + + + G + +  A  +G  E+   
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 87  LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
           LI   A+V   D    T    A +     +V +  
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.0 bits (154), Expect = 4e-13
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 56/230 (24%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSP--------VDPKDDTNRTPLILAAAAGKLEIVR 52
           + R ++HW A +   +  + L+ +++         V+  D    TPL+LA  A +  +V 
Sbjct: 32  HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 91

Query: 53  LLISNGADVNAKADGGHSALQYACSKGWKEIAELLI------------------------ 88
            L+  GAD         SAL  A +     +   ++                        
Sbjct: 92  YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

Query: 89  -----------------------HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
                                     A  + +  +G T LH AA     P+VK L     
Sbjct: 152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL-VGEK 210

Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
             + +  D  G TP+  A +E R+     L++ GA ++  +    T   L
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.2 bits (139), Expect = 5e-11
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 37  TPLILAAAA-GKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH---- 91
           +P+ L   A G   I   +     ++        + L +  S    E +E LI +     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 92  ----ANVNIQDVRGATPLH 106
               A+VN  D    TPL 
Sbjct: 61  IAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 1e-10
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 4   LLIHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLL-------- 54
           + +H  A +G   + + + +   + +DP+   NRT L   A+    E    L        
Sbjct: 4   IKLHTEA-AGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 55  ISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT 114
           I+ GADVNA     ++ L  A     + +   L+   A+  I +    + LH+AA+    
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 115 PVVKLLLTQ 123
            ++  +L  
Sbjct: 121 GMMVYMLNS 129

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 103 TPLH-RAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRLTDAKLLVR--- 157
           +P+     + G   + + +  +     VNI D  +  T LH+         ++ L+    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRE----SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 158 -----CGARLDIQNKEKKTPL 173
                 GA ++  + ++ TPL
Sbjct: 58  KECIAAGADVNAMDCDENTPL 78

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.4 bits (173), Expect = 4e-16
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 37/194 (19%)

Query: 17  VVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYA 75
           V+  LL   + ++   D    T L LAA   + +  + L+  GAD N++ + G + L  A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 76  CSKGW----------------------------------KEIAELLIHNHANVNIQDVRG 101
            +                                     + + E LI   A++N  D  G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 102 ATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR 161
            T LH AA+   T  V +        + +  D    TPL  A  E     +K L+   A 
Sbjct: 124 KTALHWAAAVNNTEAVNI--LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN 181

Query: 162 LDIQNKEKKTPLDL 175
            +I +   + P D+
Sbjct: 182 REITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.3 bits (165), Expect = 5e-15
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 54  LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
           LI+  AD+NA  + G +AL +A +    E   +L+ +HAN + QD +  TPL  AA +G 
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 168

Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
               K LL      +  ITD     P   A E       +LL
Sbjct: 169 YEASKALLDNF--ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.1 bits (162), Expect = 1e-14
 Identities = 32/114 (28%), Positives = 56/114 (49%)

Query: 7   HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
             AA    E +V+ L+   + ++  D++ +T L  AAA    E V +L+ + A+ +A+ D
Sbjct: 95  ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD 154

Query: 67  GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
              + L  A  +G  E ++ L+ N AN  I D     P   A+ +    +V+LL
Sbjct: 155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.2 bits (144), Expect = 5e-12
 Identities = 25/82 (30%), Positives = 37/82 (45%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +HWAA     + V+ LL + +  D +DD + TPL LAA  G  E  + L+ N A+     
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 66  DGGHSALQYACSKGWKEIAELL 87
                    A  +   +I  LL
Sbjct: 187 HMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 81  KEIAELLIHNHANVNI-QDVRGATPLHRAASQGITPVVKLL 120
            ++   L+   A +N   D  G T LH AA        K L
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (173), Expect = 8e-16
 Identities = 48/219 (21%), Positives = 71/219 (32%), Gaps = 49/219 (22%)

Query: 6   IHWAALSGREDVVDFLLK---NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           +H A +   E  +DFLL        +D ++D  +T L LAA  G+   V  L + GA V 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 63  AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ--------------DVRGATPLHRA 108
               GGH+AL  AC       A +L+    +                  D   A     +
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132

Query: 109 ASQGITPVVKLLLTQRLDIDVNITD--------------------------------AYG 136
                          RL ++    D                                  G
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192

Query: 137 NTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
            TPLH A E +  +  +LL++ GA    +    +TPL  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 1e-15
 Identities = 38/172 (22%), Positives = 52/172 (30%), Gaps = 17/172 (9%)

Query: 7   HWAALSGREDVVDFLLKNKSPV-------------DPKDDTNRTPLILAAAA-GKLEIVR 52
           H A           LL+ +                D   DT+  P  + +    + E   
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 53  LLISNGADVNAKADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQ 111
                   + A+   GH+ L  A      E+  LL          +   G TPLH A   
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
               V++LLL      D       G TPL  A        A+LL   GA   
Sbjct: 203 QAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 1e-14
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 15/157 (9%)

Query: 31  KDDTNRTPLILAAAAGKLEIVRLLISNGAD---VNAKADGGHSALQYACSKGWKEIAELL 87
             +   T L LA        +  L+   A    ++ + D G +AL  A   G     E L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 88  IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP-------- 139
               A V + +  G T LH A          +LL  R     + +D Y            
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 140 ----LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
                  +       +         +L+ +N +  TP
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 2e-10
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
           +H A  +    V++ LLK  +    +    RTPL  A       + RLL ++GA   
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (167), Expect = 1e-15
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 34/151 (22%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADG----------------------------- 67
             L+ AA AG+ + VR+L++NGA       G                             
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 68  ---GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
                + L  A S+G   I E+L+ + A+VN +D+   T LH A       VV+  L  +
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE--LLIK 121

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
              DV+    +  T    + +      A++L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (136), Expect = 3e-11
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 32/147 (21%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVD--------------------------------PKDD 33
           +  AA +G++D V  L+ N +P                                   +  
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65

Query: 34  TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
            +RTPL +AA+ G   IV +L+ +GADVNAK     +AL +A     +E+ ELLI   A+
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125

Query: 94  VNIQDVRGATPLHRAASQGITPVVKLL 120
           V+ Q     T    +   G   + ++L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 3e-15
 Identities = 58/210 (27%), Positives = 82/210 (39%), Gaps = 41/210 (19%)

Query: 6   IHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV--- 61
           +H A +      V  LL +K S +  KD   R PL  + +    EI   L+S   +V   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 62  -----------------------------------NAKADGGHSALQYACSKGWKEIAEL 86
                                              N   + G + L  A  K W E+++ 
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 87  LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
           LI N A+V I+D     PLHRAAS G   +++LL        VN  D  G TPL +A  E
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAE 182

Query: 147 KRLTDAKLLV-RCGARLDIQNKEKKTPLDL 175
                A LLV + GA  D+ + +     D+
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 4e-13
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 48  LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLH 106
            E+ + LI NGA V  K       L  A S G  ++ ELL     + VN QD +G TPL 
Sbjct: 118 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 177

Query: 107 RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
            A ++G      LL+ ++   + ++ D  G      A  E+     K  +    
Sbjct: 178 HALAEGHGDAAVLLV-EKYGAEYDLVDNKGAKAEDVALNEQV---KKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 6e-10
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADVNA 63
           L   A++   + +       KS V+ +D    TPL  A A G  +   LL+   GA+ + 
Sbjct: 142 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 201

Query: 64  KADGGHSALQYACSKGWKEIAELLIHNHAN 93
             + G  A   A +   +++ +  ++N  +
Sbjct: 202 VDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 9e-10
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 4/141 (2%)

Query: 37  TPLILAAAAGKLEIVR-LLISNGADVNAKADGGHSALQYACSKG---WKEIAELLIHNHA 92
            PL  A    +   V+ LL S  + +  K   G   L ++ S             + N  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 93  NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
             +  D  G TP H A S G   VVK L  + L  D+N     G T LH A  +K    +
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 153 KLLVRCGARLDIQNKEKKTPL 173
           + L+  GA + I++K  + PL
Sbjct: 122 QFLIENGASVRIKDKFNQIPL 142

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 137 NTPLHYACEEKRLTDAK-LLVRCGARLDIQNKEKKTPLDL 175
           N PLH AC E      + LL    + L  ++++ + PL  
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW 40

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 3e-14
 Identities = 31/114 (27%), Positives = 55/114 (48%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           L        +E V   L +          + R+PLI A     L +V+LL+ +GA+VNA+
Sbjct: 114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 173

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
              G SAL  A  +G   +   L+ + A+ ++++    TPL  A S+ +  +++
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-11
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 42/211 (19%)

Query: 6   IHWAALSGREDVVDFLLK----NKSPVDPKDDTNRTPLILAAAA---------------- 45
           +H A + G    V  L+         +D  ++  +TPL LA                   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 46  -----------------GKLEIVRLLISNGADVNAKADG----GHSALQYACSKGWKEIA 84
                                 +R L+ + A      +     G +AL  A +   +E  
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 85  ELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC 144
           +LL+   A+++  D++        A +  +  +  LL Q    +VN     G++ LH A 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSAS 185

Query: 145 EEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
               L   + LVR GA   ++N    TPL +
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-11
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 53  LLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
           LL             G S L +A       + +LL+ + ANVN Q   G++ LH A+ +G
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 188

Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRL 149
           + P+V+ L+      D ++ + + +TPL  A   + +
Sbjct: 189 LLPLVRTLVRS--GADSSLKNCHNDTPLMVARSRRVI 223

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 6e-10
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 101 GATPLHRAASQGITPVVKLLLTQRLD--IDVNITDAYGNTPLHYACE 145
           G TPLH A  QG  P V  L+        +++I +    TPLH A  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 7e-10
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 36  RTPLILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
            TPL +A   G L  V  L++     G +++   +   + L  A       +  LL+   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 92  ANVNIQDVRGATPLHRAASQGITPVVKLLLTQ--RLDIDVNITDAYGNTPLHYACEEKRL 149
           A+    D  G T  H A        ++ LL       +D+   +  G T LH A   +  
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 150 TDAKLLVRCGA 160
              +LL+  GA
Sbjct: 124 ETVQLLLERGA 134

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-07
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 66  DGGHSALQYACSKGWKEIAELLI----HNHANVNIQDVRGATPLHRA 108
           + G + L  A  +G       L+         ++I +    TPLH A
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 136 GNTPLHYACEEKRLTDAKLLV----RCGARLDIQNKEKKTPLDL 175
           G+TPLH A  +  L     LV    + G  LDI N  ++TPL L
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 1e-11
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 32  DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA------DGGHSALQYAC---SKGWKE 82
                  L  A     +  +    ++G D+  K       +   +AL  A     +    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 83  IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHY 142
           I + L+ N  N++ Q  +G+T LH          +KL    R    + I +  G TPL  
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL--LLRGKASIEIANESGETPLDI 120

Query: 143 ACEEKRLTDAKLLVRCGAR 161
           A   K     +LL +  + 
Sbjct: 121 AKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 6   IHWAALSGREDVVDFLLKN------KSPVDPKDDTNRTPLILAAAA---GKLEIVRLLIS 56
           +  A  +     +     +      K P+    + + T L LA  +     L IV  L+ 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 57  NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV 116
           N  +++ +   G +AL Y C     E  +LL+   A++ I +  G TPL  A        
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 117 VKLLL 121
            +LL 
Sbjct: 130 EELLT 134

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-11
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 1/127 (0%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
             L+ ++  G+ ++V+ +I    D +   D G +AL  A   G  EI + L+    NVN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDID-VNITDAYGNTPLHYACEEKRLTDAKLL 155
            D  G TPLH AAS     V K L+     +  +  +D           EE     ++ L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 156 VRCGARL 162
                ++
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 3e-10
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 5   LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
           L+  ++L G  D+V  ++         +D   T L  A  AG  EIV+ L+  G +VNA 
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 65  ADGGHSALQYACSKGWKEIAELLIHNHANVNIQ---DVRGATPLHRAASQGITPVVKLLL 121
              G + L  A S    ++ + L+ + A V      D++ A        +G T   + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 122 TQR 124
             +
Sbjct: 124 GVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 17  VVDFLLKNKSPVDPKDDTN-RTPLILAAAA--GKLEIVRLLISNGADV 61
           V  FL+++ + V     ++ +T          G  +  + L      +
Sbjct: 82  VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 3e-11
 Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 33/155 (21%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGG---------------------------- 68
             L  AAA G LE +  L+ N  +VNA+   G                            
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 69  ----HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
                + +  A   G+ +  + L+   A+VNI+D  G  PLH AA +G   VV+ L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
              +V   +  G+T    A    R     L+   G
Sbjct: 123 -ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 27  PVDPKDDTNRTPLILAAAAGKLEIVRLLISNG 58
            V  ++    T   LA   G+ E+V L+ +NG
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 7e-06
 Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 33/151 (21%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
           +  AA  G  + +  LL+N   V+ ++   RT L +          RLL+          
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDR 64

Query: 66  DGGHSALQYACSKGWKE---------------------------------IAELLIHNHA 92
            G       A +                                      +  L+ H  +
Sbjct: 65  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 124

Query: 93  NVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
           NV  ++ +G T    A   G   VV L+   
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-10
 Identities = 39/153 (25%), Positives = 52/153 (33%), Gaps = 36/153 (23%)

Query: 37  TPLILAAAAGKLEIVR-LLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH---- 91
             L  AAA G ++ VR LL       +A    G +ALQ           ELL        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 92  ----------------------------ANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
                                       A+VN+ D  GA P+H A  +G T VV      
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS---FL 120

Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
             + D++  DA G TPL  A +        +L 
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 8e-07
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 34/149 (22%)

Query: 6   IHWAALSGREDVVDFLL-KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS-------- 56
           +  AA  G    V  LL +     D  +   +T L +         + LL          
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD 65

Query: 57  ------------------------NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHA 92
                                   +GADVN     G   +  A  +G   +   L    +
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ES 124

Query: 93  NVNIQDVRGATPLHRAASQGITPVVKLLL 121
           +++ +D RG TPL  A  +G   +V +L 
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC 144
           R    L  AA++G    V+ LL  R  +  +  + +G T L    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL-HRELVHPDALNRFGKTALQVMM 44

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 28  VDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
           +  +D    TPL LA   G  ++V +L  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 32/136 (23%)

Query: 71  ALQYACSKG-WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD--- 126
            L  A ++G  +E+  LL     + +  +  G T L           ++LL         
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 127 ---------------------------IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
                                       DVN+ D  G  P+H A +E        L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123

Query: 160 ARLDIQNKEKKTPLDL 175
           + L  ++    TPL+L
Sbjct: 124 SDLHRRDARGLTPLEL 139

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 3e-10
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 44/183 (24%)

Query: 36  RTPLILAAAAGK----LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI-------- 83
            + L LA    +    +E++R +  + A +N + +   + L  A      EI        
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 84  -------------------------------AELLIHNHANVNIQDVRGATPLHRAASQG 112
                                          +    H H+ +   +  G T LH A+  G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
              +V+LL++             G T LH A + +      LL++CGA ++    +  +P
Sbjct: 123 YLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 181

Query: 173 LDL 175
             L
Sbjct: 182 YQL 184

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 9e-09
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 1   NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGA 59
           N    +H A++ G   +V+ L+   + V+ ++  N RT L LA      ++V LL+  GA
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 60  DVNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
           DVN     G+S  Q    +    I + L      
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 1e-08
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 35  NRTPLILAAAAGKLEIVRLLISNGADV-NAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
             T L LA+  G L IV LL+S GADV   +   G +AL  A      ++  LL+   A+
Sbjct: 111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 170

Query: 94  VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
           VN    +G +P      +  T + + L    L+    + ++
Sbjct: 171 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 3e-08
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 101 GATPLHRAASQGITPVVKLLLTQRLD--IDVNITDAYGNTPLHYACE 145
           G + LH A       +   ++ Q       +N  +    TPLH A  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 4e-08
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 69  HSALQYACSKGWKEIAELLIHNHANV-NIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
           H+ L  A   G+  I ELL+   A+V   +   G T LH A       +V LLL      
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GA 169

Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD--IQNKEKKTPLD 174
           DVN     G +P             + L +        +   E +   D
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-07
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 68  GHSALQYACSKGW----KEIAELLIHNHANVNIQDVRGATPLHRA 108
           G S L  A          E+   +  + A +N Q+    TPLH A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 136 GNTPLHYACEEKRLTDAKLLVR----CGARLDIQNKEKKTPL 173
           G++ LH A   +       ++R      A L+ QN  ++TPL
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-09
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 33  DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHA 92
           + +   L  AAA G++E VR L+  GA+ NA    G   +Q       +    LL+H   
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 93  NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
                      P+H AA +G    +   +  R    +++ DA+G  P+  A E      A
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLV--VLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 153 KLL 155
           + L
Sbjct: 119 RYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 29  DPKDDTNRTPLILAAAAGKLEIVRLLIS 56
           D +D   R P+ LA   G  ++ R L +
Sbjct: 96  DVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (114), Expect = 2e-08
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 37  TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
              + A   G L+ V+  ++ G DVN   +GG   L YA   G  EI E L+   A++N 
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 97  QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
            D    TPL  A  +G    VK  L      D  +    G T L     +
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVK--LLLSKGADKTVKGPDGLTALEATDNQ 111

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (105), Expect = 3e-07
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 6   IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
             WA  +G  D V   +     V+   +  R PL  AA  G+LEI+  L+  GAD+NA  
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65

Query: 66  DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
               + L  A  +G     +LL+   A+  ++   G T L    +Q     +K LL
Sbjct: 66  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ----AIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	100.0
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.98
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-45  Score=256.56  Aligned_cols=196  Identities=30%  Similarity=0.384  Sum_probs=178.9

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACS   77 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~---~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~   77 (198)
                      ||+||||+||+.|+.+++++|+++|++   ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc
Confidence            699999999999999999999999887   56778899999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCC-----------------------------------------------CCcCCCCCCcHHHHHHh
Q psy14007         78 KGWKEIAELLIHNHAN-----------------------------------------------VNIQDVRGATPLHRAAS  110 (198)
Q Consensus        78 ~~~~~~~~~l~~~~~~-----------------------------------------------~~~~~~~~~~~l~~a~~  110 (198)
                      .++.+++++|++.+..                                               ++.++..|.||||+|++
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            9999999998764321                                               23456678999999999


Q ss_pred             cCChHHHHHHHhccCCCCcc-cCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        111 QGITPVVKLLLTQRLDIDVN-ITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      .++.+++++|++.+.  +.+ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+|+|+..++.++++.|.
T Consensus       168 ~~~~~~v~~Ll~~~~--~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGA--DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             TTCHHHHHHHHHHTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ccccccccchhcccc--cccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999854  444 35678999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC
Q psy14007        190 PIVGDLPED  198 (198)
Q Consensus       190 ~~~~~~~~~  198 (198)
                      ++|++.|+|
T Consensus       246 ~~Ga~~~~~  254 (255)
T d1oy3d_         246 AHGAPEPED  254 (255)
T ss_dssp             HTTCCCCCC
T ss_pred             HcCCCCCCC
Confidence            999999887

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=234.87  Aligned_cols=187  Identities=43%  Similarity=0.674  Sum_probs=178.4

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|+||||+|+..|+.++++++++.+......+..+.++++.++..++.+++++|++++++++.+|..|.||||+|+..++
T Consensus        36 ~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~  115 (223)
T d1uoha_          36 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR  115 (223)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCC
Confidence            58999999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|+++|++++..+..+.||+|+++..+..+++++|...  +.+++..|..|.||||.|+..|+.+++++|+++|+
T Consensus       116 ~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~--~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga  193 (223)
T d1uoha_         116 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY--KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA  193 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc--cceeeeccCCCCceeccccccCcHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999987  66888999999999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcc
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEP  190 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~  190 (198)
                      +++.+|..|+||+|+|. .+..++++.|++
T Consensus       194 d~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         194 SIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             CCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            99999999999999996 688889988864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-40  Score=227.09  Aligned_cols=191  Identities=23%  Similarity=0.338  Sum_probs=167.7

Q ss_pred             CcchhHHHHHhcCcHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          1 NERLLIHWAALSGRED----VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~----~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      ||+||||+|+..|+.+    +++++...+.+++..|..|+||||+|+..++.+++++|++.|++++.++..|.|||+.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999964    555666788999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCCCc------CCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccC-CCCCCCHHHHHHHhCCh
Q psy14007         77 SKGWKEIAELLIHNHANVNI------QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNIT-DAYGNTPLHYACEEKRL  149 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~t~l~~a~~~~~~  149 (198)
                      ..++.++++++++.+.....      ....+.||+|.|+..+..+++.+++..+  ..++.. +.+|.||||.|+..|+.
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~--~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccC--cccccccccCCCCccccccccccH
Confidence            99999999999987665332      3346789999999999999999999884  445544 46799999999999999


Q ss_pred             hhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        150 TDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       150 ~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      +++++|+++|+|++.+|.+|.||+|+|+..++.++++.|.+...
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999887643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-38  Score=218.94  Aligned_cols=188  Identities=32%  Similarity=0.355  Sum_probs=160.0

Q ss_pred             chhHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccc---CCCCCcHH------
Q psy14007          3 RLLIHWAALSGREDVVDFLLK-NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK---ADGGHSAL------   72 (198)
Q Consensus         3 ~~~L~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~---~~~~~t~l------   72 (198)
                      ++|||+||..|+.++++.|++ .+..++.+|.+|.||||+|+..|+.+++++|+++|++++..   +..|.+|+      
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            589999999999999999887 45788899999999999999999999999999998887533   33444444      


Q ss_pred             -----------------------------HHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhc
Q psy14007         73 -----------------------------QYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ  123 (198)
Q Consensus        73 -----------------------------~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  123 (198)
                                                   +.++..++.+++++|+..+...+..+..|+||+|+++..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                         444555556666777777777888888999999999999999999999987


Q ss_pred             cCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH-cCCCcceecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR-CGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       124 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      + ..+++..|..|.||||+|+..++.+++++|++ .|++++.+|..|.||+|+|+..   ++++.|++.|.|
T Consensus       161 ~-~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~~~~~Ll~~g~d  228 (229)
T d1ixva_         161 G-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVD  228 (229)
T ss_dssp             T-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHHHHHCCC
T ss_pred             c-cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHHHHcCCC
Confidence            4 35678899999999999999999999999996 5999999999999999999964   577888877764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.2e-38  Score=225.82  Aligned_cols=185  Identities=31%  Similarity=0.403  Sum_probs=166.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      +|.|+|+.||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|++++++....+..+.+||+.++..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            35689999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             HHHHHHHHhcCCCCCcC------------------------------------------------------------CCC
Q psy14007         81 KEIAELLIHNHANVNIQ------------------------------------------------------------DVR  100 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~------------------------------------------------------------~~~  100 (198)
                      .+++++|+++|...+..                                                            +..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            99999999877654332                                                            234


Q ss_pred             CCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChh
Q psy14007        101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       101 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~  180 (198)
                      |.||+|.++..|+.+++++|++.  +.+++..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.||+|+|+. .
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~--g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e-~  275 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-D  275 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-G
T ss_pred             CCChhhHHHHcCChhhhcccccc--eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-H
Confidence            77999999999999999999987  66888899999999999999999999999999999999999999999999986 3


Q ss_pred             HHHHHhhh
Q psy14007        181 LAQALTEI  188 (198)
Q Consensus       181 ~~~~~~~l  188 (198)
                      ....+..+
T Consensus       276 ~~~~L~~~  283 (291)
T d1s70b_         276 ILGYLEEL  283 (291)
T ss_dssp             GGHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.7e-39  Score=228.48  Aligned_cols=189  Identities=23%  Similarity=0.348  Sum_probs=167.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHH--------HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHH
Q psy14007          1 NERLLIHWAALSGREDVVDFL--------LKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSAL   72 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l--------~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l   72 (198)
                      +|+||||+|+..|+.+++++|        ++.|++++.+|..|.||||+|++.|+.+++++|+++|++++.++..|.||+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            489999999999999888776        567999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChHHHHHHHHhcCC-----------------------------------------------CCCcCCCCCCcHH
Q psy14007         73 QYACSKGWKEIAELLIHNHA-----------------------------------------------NVNIQDVRGATPL  105 (198)
Q Consensus        73 ~~a~~~~~~~~~~~l~~~~~-----------------------------------------------~~~~~~~~~~~~l  105 (198)
                      +.|+..++.+++.++...+.                                               ..+..+..+.|+|
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999888877644210                                               0122344688999


Q ss_pred             HHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHH
Q psy14007        106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQAL  185 (198)
Q Consensus       106 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~  185 (198)
                      |+++..++.+++++++... +.+.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999998776543 567788899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q psy14007        186 TEIEP  190 (198)
Q Consensus       186 ~~l~~  190 (198)
                      +.|.+
T Consensus       271 ~lL~~  275 (277)
T d2fo1e1         271 DIFDR  275 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-37  Score=210.69  Aligned_cols=184  Identities=27%  Similarity=0.335  Sum_probs=164.4

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLK----NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~----~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      ||+||||+||..|+.+++++|++    .|++++..|..|.||||+|+..|+.+++++|+++|++.+.....+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            79999999999999999998874    89999999999999999999999999999999999999998889999999998


Q ss_pred             hcChHHHHHHHHhcCCC--------------------------------------CCcCCCCCCcHHHHHHhcCChHHHH
Q psy14007         77 SKGWKEIAELLIHNHAN--------------------------------------VNIQDVRGATPLHRAASQGITPVVK  118 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~~--------------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~  118 (198)
                      ...+.++++.+......                                      .......+.++++.++..+...+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            88888777665442111                                      1122345789999999999999999


Q ss_pred             HHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHh
Q psy14007        119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT  186 (198)
Q Consensus       119 ~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~  186 (198)
                      ++++.  +...+.++..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++
T Consensus       162 ~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhh--ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99998  5577888999999999999999999999999999999999999999999999999999886

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=214.45  Aligned_cols=193  Identities=31%  Similarity=0.383  Sum_probs=181.6

Q ss_pred             cchhHHHHHhcCcHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLL-KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~-~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      .++.|+.++..|+.+.++.++ +.+..++.+|..|+||||+|+..|+.+++++|++.+......+..+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            367889999999999997766 5667888999999999999999999999999999999888888899999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA  160 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  160 (198)
                      .+++++|++++++++..+..|.||||+|+..++.+++++|+++  |.+++..+..|.||||.|+..++.+++++|.+.|+
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~--g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence            9999999999999999999999999999999999999999998  66888899999999999999999999999999999


Q ss_pred             CcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        161 RLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       161 ~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +++.++..|.||+|.|+..++.++++.|.+.+.++.
T Consensus       161 ~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             eeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC
Confidence            999999999999999999999999999999988765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-36  Score=212.61  Aligned_cols=195  Identities=27%  Similarity=0.300  Sum_probs=159.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCC------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG------------   67 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~-~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~------------   67 (198)
                      +++|+|++|++.|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|++.+......+..            
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            36899999999999999999999999998765 47999999999999999999998876654332211            


Q ss_pred             ----------------------------------------------------------------CCcHHHHHHhcChHHH
Q psy14007         68 ----------------------------------------------------------------GHSALQYACSKGWKEI   83 (198)
Q Consensus        68 ----------------------------------------------------------------~~t~l~~a~~~~~~~~   83 (198)
                                                                                      |.||||+|++.++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                            5667777777777777


Q ss_pred             HHHHHh-cCCCCCcCCCCCCcHHHHHHhcCC----hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH-
Q psy14007         84 AELLIH-NHANVNIQDVRGATPLHRAASQGI----TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR-  157 (198)
Q Consensus        84 ~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-  157 (198)
                      +++|++ .|++++..+..+.+++..+...+.    ..++++|+++  +++++..+..|.||||.|+..++.+++++|++ 
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~--ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT--TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC--CCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            777764 366666666666666655543332    3466677766  55677888999999999999999999999997 


Q ss_pred             cCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCCC
Q psy14007        158 CGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLPE  197 (198)
Q Consensus       158 ~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~~  197 (198)
                      .|++++.+|..|.||||+|+..++.++++.|.+.|+++.-
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            5999999999999999999999999999999999999763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=191.82  Aligned_cols=154  Identities=29%  Similarity=0.363  Sum_probs=147.3

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI   83 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   83 (198)
                      ++||+|+..|+.++|++|+++|++++..|..|.||||+|+ .++.+++++|++++++++.++..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            8999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         84 AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      ++.+++.+..++..+..+.+|+++|+..++.+++++|++++ +.+.+.+|..|.||||+|+..++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999985 4577889999999999999999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-35  Score=206.16  Aligned_cols=159  Identities=27%  Similarity=0.269  Sum_probs=144.3

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--------------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD--------------------   60 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~--------------------   60 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++....                    
T Consensus        44 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (255)
T d1oy3d_          44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (255)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccc
Confidence            488999999999999999999999999999999999999999999999999999653211                    


Q ss_pred             ---------------------------ccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcC-CCCCCcHHHHHHhcC
Q psy14007         61 ---------------------------VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ-DVRGATPLHRAASQG  112 (198)
Q Consensus        61 ---------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~  112 (198)
                                                 ++.++..|.||||+|+..++.+++++|++.+++.+.. +..|.||||+|++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~  203 (255)
T d1oy3d_         124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (255)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccccccccc
Confidence                                       1223556899999999999999999999999988764 567999999999999


Q ss_pred             ChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007        113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      +.+++++|+++  +++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus       204 ~~~~v~~Ll~~--gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         204 AASVLELLLKA--GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999998  678899999999999999999999999999999996

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.2e-34  Score=194.22  Aligned_cols=187  Identities=28%  Similarity=0.358  Sum_probs=167.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCcHHHHHHhcC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD-VNAKADGGHSALQYACSKG   79 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~a~~~~   79 (198)
                      +|.||||+||..|+.+++++|++.|++++..+..+.++++.++..++............. .......+.++.+.+....
T Consensus        22 ~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (209)
T d1ot8a_          22 TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA  101 (209)
T ss_dssp             HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            488999999999999999999999999999999999999999999888877776665433 3334556778888888888


Q ss_pred             hHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcC
Q psy14007         80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG  159 (198)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  159 (198)
                      .....+.|...+.+++..+..|.||++.++..+..+++..++..  +.+++..|..|.||||.|+..|+.+++++|+++|
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~--~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  179 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH--HANRDAQDDKDETPLFLAAREGSYEASKALLDNF  179 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             chhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc--cccccccccccccccchhccccHHHHHHHHHHCC
Confidence            88999999999999999999999999999999999999999998  5578889999999999999999999999999999


Q ss_pred             CCcceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        160 ARLDIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       160 ~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      +|++.+|..|.||+|+|+..++.++++.|.
T Consensus       180 ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         180 ANREITDHMDRLPRDVASERLHHDIVRLLD  209 (209)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHhhcC
Confidence            999999999999999999999999999873

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=210.60  Aligned_cols=188  Identities=31%  Similarity=0.403  Sum_probs=165.8

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI   83 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   83 (198)
                      ||||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.++
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCC---------------------------------CcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcc
Q psy14007         84 AELLIHNHANV---------------------------------NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVN  130 (198)
Q Consensus        84 ~~~l~~~~~~~---------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~  130 (198)
                      +++|+..+.+.                                 ...+..+.++++.++..++.+++++|++.  +.+++
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~--~~~~~  159 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER--DAHPN  159 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc--CCCCC
Confidence            99988754432                                 33455678899999999999999999987  55778


Q ss_pred             cCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccccc
Q psy14007        131 ITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVG  193 (198)
Q Consensus       131 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~  193 (198)
                      ..+..|.+|||.|+..++.+++++|+++|++++..+..|.||++.+......+....+.....
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~  222 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  222 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccc
Confidence            888889999999999999999999999999988888888888888877777776666544433

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=208.43  Aligned_cols=192  Identities=28%  Similarity=0.371  Sum_probs=167.9

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCC---------------------------------CCCHHHHHHHcCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDT---------------------------------NRTPLILAAAAGK   47 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~---------------------------------g~~~L~~A~~~~~   47 (198)
                      +|.+|||+|+..|+.+++++|+++|++++..+..                                 +.|||+.|+..++
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            4778999999999999999999998877655444                                 4556666667777


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCC
Q psy14007         48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI  127 (198)
Q Consensus        48 ~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~  127 (198)
                      .++++++++.+...+..+..|.||++.++..++.+++++|+++|++++..+..+.||++.++..+..++++++++.  +.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~--g~  321 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--QA  321 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT--TC
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc--cc
Confidence            7777777777777777788889999999999999999999999999999999999999999999999999999997  66


Q ss_pred             CcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccC
Q psy14007        128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGD  194 (198)
Q Consensus       128 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~  194 (198)
                      +++.+|..|.||||.|++.|+.+++++|+++|++++.+|.+|.||+|+|+..|+.++++.|.....+
T Consensus       322 ~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~  388 (408)
T d1n11a_         322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE  388 (408)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhc
Confidence            8899999999999999999999999999999999999999999999999999999988866554443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-33  Score=181.29  Aligned_cols=151  Identities=28%  Similarity=0.349  Sum_probs=141.2

Q ss_pred             hhHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE   82 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~   82 (198)
                      ..|+.||..|+.++|++|++. +.+++..|..|.||||+|+. ++.+++++|++++.+++..+..+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            459999999999999999985 78999999999999999874 8899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007         83 IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      +++++++.+++++.++..|.||||+|++.|+.+++++|+.   +.+++.+|..|.||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~---~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA---ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT---TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeeccccccccccccccccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999998884   567889999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-32  Score=178.70  Aligned_cols=152  Identities=28%  Similarity=0.393  Sum_probs=138.0

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW   80 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~   80 (198)
                      |..|||+.|++.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+
T Consensus         1 d~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            45799999999999999999999999876 68889999999999999999999998877777777788899999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL  155 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  155 (198)
                      .+++++++..+.+.+..+..|.||||+|+..|+.+++++|++.  |++++..|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~--gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeecccc--ccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999988  668888999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=183.28  Aligned_cols=153  Identities=34%  Similarity=0.404  Sum_probs=144.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHH
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      ++||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .++.+++++|++.|++++..+..+.++++.++..+....
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            8999999999999999999999999999999999999886 689999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCC-CcceecCCCCCccccCCChhHHHHHhhhcccc
Q psy14007        117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA-RLDIQNKEKKTPLDLLPLPHLAQALTEIEPIV  192 (198)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~  192 (198)
                      ++.++..  +.+++..+..|.+|+|.|+..++.+++++|+++|+ +++.+|..|+||+|+|+..++.++++.|++.|
T Consensus        82 ~~~l~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccc--cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999988  55777889999999999999999999999999886 88999999999999999999999999998764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=9.5e-32  Score=174.84  Aligned_cols=151  Identities=31%  Similarity=0.374  Sum_probs=142.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChH
Q psy14007         36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP  115 (198)
Q Consensus        36 ~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~  115 (198)
                      .|||+.|++.|+.+++++|+++|++++ .+..|.||||+|+..++.+++..++............+.++++.++.....+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            489999999999999999999999876 6889999999999999999999999988888888888899999999999999


Q ss_pred             HHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhc
Q psy14007        116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE  189 (198)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~  189 (198)
                      +++++.++  +.+.+..+..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+|+|+..|+.++++.|+
T Consensus        82 ~~~~l~~~--~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_          82 IVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             eeeccccc--CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            99999988  5577889999999999999999999999999999999999999999999999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=173.61  Aligned_cols=151  Identities=29%  Similarity=0.366  Sum_probs=140.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChH
Q psy14007         37 TPLILAAAAGKLEIVRLLISN-GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP  115 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~  115 (198)
                      ..|+.||..|+.+++++|++. +.+++.+|..|.||||+|+. ++.+++++|++++.+++..+..+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999985 78999999999999999875 7789999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHhhhccc
Q psy14007        116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPI  191 (198)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~  191 (198)
                      ++++++++  +.+++..+..|.||||+|+..|+.+++++|+ .|++++.+|..|+||+|+|+..++.++++.|++.
T Consensus        83 ~~~~~l~~--~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc--ccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999998  5678889999999999999999999999887 7899999999999999999999999999998764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=181.80  Aligned_cols=159  Identities=27%  Similarity=0.331  Sum_probs=145.7

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc------cccCCCCCcHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV------NAKADGGHSALQY   74 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~------~~~~~~~~t~l~~   74 (198)
                      +|+||||+|+..|+.+++++|++.|++++..+..|.|||++|+..++.++++.|++.+...      ......+.||++.
T Consensus        38 ~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~  117 (221)
T d1iknd_          38 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL  117 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHH
T ss_pred             CCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhH
Confidence            5899999999999999999999999999999999999999999999999999999875442      2234468899999


Q ss_pred             HHhcChHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007         75 ACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus        75 a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      |+..++.+++++++..|...+..+ ..|.||+|+|++.|+.+++++|+++  |++++.+|..|.||||+|+..++.++++
T Consensus       118 a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~--gad~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhc--CCcccccCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999999988766 5699999999999999999999988  6789999999999999999999999999


Q ss_pred             HHHHcCCC
Q psy14007        154 LLVRCGAR  161 (198)
Q Consensus       154 ~Ll~~g~~  161 (198)
                      +|++.+.+
T Consensus       196 ~l~~~~~~  203 (221)
T d1iknd_         196 QLGQLTLE  203 (221)
T ss_dssp             HHHTTSCG
T ss_pred             HHHHcCCc
Confidence            99998765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-30  Score=179.00  Aligned_cols=157  Identities=28%  Similarity=0.354  Sum_probs=133.7

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCC---CCCCCCC-----------------------------------CHHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVD---PKDDTNR-----------------------------------TPLILA   42 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~---~~~~~g~-----------------------------------~~L~~A   42 (198)
                      +|+||||+|+..|+.+++++|+++|++++   ..+..|.                                   ++++.+
T Consensus        33 ~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  112 (229)
T d1ixva_          33 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA  112 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999999988764   2333444                                   455555


Q ss_pred             HHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcC-CCCCcCCCCCCcHHHHHHhcCChHHHHHHH
Q psy14007         43 AAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH-ANVNIQDVRGATPLHRAASQGITPVVKLLL  121 (198)
Q Consensus        43 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~  121 (198)
                      +..++.+++++|++.+...+..+..|.||||.|+..++.+++++|++.+ .+++.++..|.||||+|+..|+.+++++|+
T Consensus       113 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         113 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHH
Confidence            5556667777777777777778889999999999999999999999987 578889999999999999999999999999


Q ss_pred             hccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007        122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus       122 ~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      ++. |++++..|..|.||||+|+.   .+++++|+++|+|
T Consensus       193 ~~~-gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         193 EKY-GAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHH-CCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             Hhc-CCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            742 67889999999999999984   5899999999997

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=1e-33  Score=206.80  Aligned_cols=191  Identities=17%  Similarity=0.123  Sum_probs=151.5

Q ss_pred             CcchhHHHHHhcCcHHHHHH---HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccC--CCCCcHHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDF---LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA--DGGHSALQYA   75 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~---l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~--~~~~t~l~~a   75 (198)
                      +|+|+|++|+..|+.+++++   |++.|++++..+..|.||||+|++.|+.+++++|+++|++++..+  ..|.||||+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            47899999999999887766   788999999999999999999999999999999999999988765  4689999999


Q ss_pred             HhcChHHHHHHHHhcCCCCCc---CCCCCCcHHHHHHhcCChHHHHHHHhccCCCC------------------------
Q psy14007         76 CSKGWKEIAELLIHNHANVNI---QDVRGATPLHRAASQGITPVVKLLLTQRLDID------------------------  128 (198)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~------------------------  128 (198)
                      +..|+.+++++|++.|+....   .+..+.+|++.|+.+|+.+++++|++.+...+                        
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR  248 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhcc
Confidence            999999999999999876432   33456778888999999999999998642100                        


Q ss_pred             -------cccCCCC----------------CCCHHHHHHHhCChhhHHHHHHcCCCc-----ceecCCCCCccccCCChh
Q psy14007        129 -------VNITDAY----------------GNTPLHYACEEKRLTDAKLLVRCGARL-----DIQNKEKKTPLDLLPLPH  180 (198)
Q Consensus       129 -------~~~~~~~----------------g~t~l~~a~~~~~~~~~~~Ll~~g~~~-----~~~~~~g~t~~~~a~~~~  180 (198)
                             +......                +.++++.++..+..+++++|++.+...     ...+.+|.||+|+|++.|
T Consensus       249 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~G  328 (346)
T d2ajaa1         249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG  328 (346)
T ss_dssp             HHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT
T ss_pred             chHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcC
Confidence                   0000011                125667777778899999999887643     344557899999999999


Q ss_pred             HHHHHhhhccc
Q psy14007        181 LAQALTEIEPI  191 (198)
Q Consensus       181 ~~~~~~~l~~~  191 (198)
                      +.++++.|.+.
T Consensus       329 n~e~v~lLL~~  339 (346)
T d2ajaa1         329 NQGACALLLSI  339 (346)
T ss_dssp             CTTHHHHHTTS
T ss_pred             cHHHHHHHhCC
Confidence            99999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.8e-30  Score=184.08  Aligned_cols=151  Identities=21%  Similarity=0.246  Sum_probs=111.3

Q ss_pred             CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcCh-------HHHHHHHHhcCCCCC
Q psy14007         24 NKSPVDPK-DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW-------KEIAELLIHNHANVN   95 (198)
Q Consensus        24 ~~~~~~~~-~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~l~~~~~~~~   95 (198)
                      .+.+++.. |..|+||||+||..|+.+++++|+++|++++.+|..|.||||.|+..++       .++++++..   ...
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhh
Confidence            45566654 7778888888888888888888888888888888888888888887654       244444443   344


Q ss_pred             cCCCCCCcHHHHHHhcCCh----H--------HHHHHHhccC-----------------------------------CCC
Q psy14007         96 IQDVRGATPLHRAASQGIT----P--------VVKLLLTQRL-----------------------------------DID  128 (198)
Q Consensus        96 ~~~~~~~~~l~~a~~~~~~----~--------~~~~l~~~~~-----------------------------------~~~  128 (198)
                      ..+..|+||+|+++..+..    .        ++.++...+.                                   ...
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            5567778888877653331    1        1222222211                                   011


Q ss_pred             cccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCC
Q psy14007        129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP  177 (198)
Q Consensus       129 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~  177 (198)
                      ++.+|..|.||||+|++.|+.+++++|+++|++++.+|+.|.||+++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            5778999999999999999999999999999999999999999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.5e-29  Score=180.52  Aligned_cols=183  Identities=25%  Similarity=0.331  Sum_probs=157.8

Q ss_pred             cHHHHHHHHhCCCCCCCC---------CCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHH
Q psy14007         14 REDVVDFLLKNKSPVDPK---------DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIA   84 (198)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~---------~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   84 (198)
                      +.+-++.+.....+....         +..+.|+|+.||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        10 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv   89 (291)
T d1s70b_          10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMV   89 (291)
T ss_dssp             HHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceee
Confidence            455666666554333211         22356899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCC------------------------------------
Q psy14007         85 ELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID------------------------------------  128 (198)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~------------------------------------  128 (198)
                      ++|++++.+....+..+.+|++.++..++.+++++|++++...+                                    
T Consensus        90 ~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~  169 (291)
T d1s70b_          90 KFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA  169 (291)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHH
T ss_pred             eeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccc
Confidence            99999999999999999999999999999999999987543211                                    


Q ss_pred             ----------------------cccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCccccCCChhHHHHHh
Q psy14007        129 ----------------------VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT  186 (198)
Q Consensus       129 ----------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~  186 (198)
                                            ....+..|.||||.|+..++.+++++|++.|++++.++..|.||+|+|+..|+.++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~  249 (291)
T d1s70b_         170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR  249 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHH
Confidence                                  1224567889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCC
Q psy14007        187 EIEPIVGDLP  196 (198)
Q Consensus       187 ~l~~~~~~~~  196 (198)
                      .|.+.++++.
T Consensus       250 lLl~~Gadv~  259 (291)
T d1s70b_         250 ILVENLCDME  259 (291)
T ss_dssp             HHHHTTCCTT
T ss_pred             HHHHCCCCCC
Confidence            9999998875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.5e-29  Score=177.95  Aligned_cols=156  Identities=26%  Similarity=0.357  Sum_probs=137.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---C-----------------
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA---D-----------------   60 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~---~-----------------   60 (198)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.++++++.....   .                 
T Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (277)
T d2fo1e1          73 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  152 (277)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             CCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHh
Confidence            58999999999999999999999999999999999999999999999999888853210   0                 


Q ss_pred             ---------------------------ccccCCCCCcHHHHHHhcChHHHHHHHH-hcCCCCCcCCCCCCcHHHHHHhcC
Q psy14007         61 ---------------------------VNAKADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQG  112 (198)
Q Consensus        61 ---------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~l~~a~~~~  112 (198)
                                                 .+..+..|.|+||.++..++.+++++++ ..+.+.+..+..|.||||+|++.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g  232 (277)
T d2fo1e1         153 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  232 (277)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence                                       0112345889999999999999998755 678888889999999999999999


Q ss_pred             ChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007        113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      +.+++++|+++  |++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       233 ~~~iv~~Ll~~--gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         233 RIEVVMYLIQQ--GASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CHHHHHHHHHT--TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHC--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999998  668899999999999999999999999999864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-30  Score=161.44  Aligned_cols=119  Identities=22%  Similarity=0.317  Sum_probs=74.0

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCC-cHHHHHHhcCh
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGH-SALQYACSKGW   80 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~-t~l~~a~~~~~   80 (198)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..+. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            345666666666666666666666666666666666666543 4566666666666666665555443 46666666666


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHH
Q psy14007         81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL  121 (198)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~  121 (198)
                      .+++++|+++|++++.++..|.||+|+|++.|+.+++++|+
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666666666666666666666666554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=173.87  Aligned_cols=166  Identities=34%  Similarity=0.407  Sum_probs=147.8

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCC
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPK----------DDTNRTPLILAAAAGKLEIVRLLISN-GADVNAKADGGH   69 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~----------~~~g~~~L~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~   69 (198)
                      +|.++++.|+..|+...++.++....+++..          ...|.||||+|++.++.+++++|+++ |++++..+..+.
T Consensus       104 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~  183 (285)
T d1wdya_         104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  183 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred             CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCC
Confidence            4678999999999999999999987765543          34689999999999999999999975 889999999998


Q ss_pred             cHHHHHHh----cChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHH
Q psy14007         70 SALQYACS----KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE  145 (198)
Q Consensus        70 t~l~~a~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~  145 (198)
                      ++...+..    .+..+++++|+++|++++.++..|.||||+|++.|+.+++++|++.. +.+++..|..|.||||+|++
T Consensus       184 ~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~-g~din~~d~~G~TpL~~A~~  262 (285)
T d1wdya_         184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-SCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHHH
Confidence            88777644    34568999999999999999999999999999999999999999853 77899999999999999999


Q ss_pred             hCChhhHHHHHHcCCCcceecC
Q psy14007        146 EKRLTDAKLLVRCGARLDIQNK  167 (198)
Q Consensus       146 ~~~~~~~~~Ll~~g~~~~~~~~  167 (198)
                      .++.+++++|+++|||++.+|.
T Consensus       263 ~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         263 LKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999998874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.6e-30  Score=161.54  Aligned_cols=107  Identities=28%  Similarity=0.369  Sum_probs=97.2

Q ss_pred             cchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChH
Q psy14007          2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWK   81 (198)
Q Consensus         2 g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~   81 (198)
                      ..|||++|++.|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 c~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             CChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            35899999999999999999999999999999999999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHH
Q psy14007         82 EIAELLIHNHANVNIQDVRGATPLHRA  108 (198)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~l~~a  108 (198)
                      +++++|+++|++++.++..|.||+|+|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            999999999999998899999998887

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=157.29  Aligned_cols=120  Identities=31%  Similarity=0.386  Sum_probs=110.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCC-cHHHHHHhcCC
Q psy14007         35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGA-TPLHRAASQGI  113 (198)
Q Consensus        35 g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~~a~~~~~  113 (198)
                      +.++||+|++.|+.+++++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++++..+..+. +|||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            468999999999999999999999999999999999999775 6899999999999999999988775 69999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHH
Q psy14007        114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR  157 (198)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  157 (198)
                      .+++++|+++  |.+++.+|..|.||||+|+..|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~--ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccc--ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999998  66888999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2.1e-29  Score=156.45  Aligned_cols=108  Identities=26%  Similarity=0.293  Sum_probs=93.0

Q ss_pred             cHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCCh
Q psy14007         70 SALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRL  149 (198)
Q Consensus        70 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  149 (198)
                      |||.+|++.|+.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++  +.+++.+|..|.||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc--cceeeecccccccchhhhhhcCch
Confidence            678888888888888888888888888888888888888888888888888887  557788888999999999999999


Q ss_pred             hhHHHHHHcCCCcceecCCCCCccccCCCh
Q psy14007        150 TDAKLLVRCGARLDIQNKEKKTPLDLLPLP  179 (198)
Q Consensus       150 ~~~~~Ll~~g~~~~~~~~~g~t~~~~a~~~  179 (198)
                      +++++|+++|++++.+|..|.||+|+|...
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~  111 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATDNQ  111 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCSST
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHhHH
Confidence            999999999999999999999999999653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=154.52  Aligned_cols=120  Identities=25%  Similarity=0.305  Sum_probs=102.2

Q ss_pred             hhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHH
Q psy14007          4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI   83 (198)
Q Consensus         4 ~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   83 (198)
                      ++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57888999999999999999999999999999999999999999999999999988888888899999999999999999


Q ss_pred             HHHHHhcCCCCCcCCC-CCCcHHHHH--HhcCChHHHHHHHhc
Q psy14007         84 AELLIHNHANVNIQDV-RGATPLHRA--ASQGITPVVKLLLTQ  123 (198)
Q Consensus        84 ~~~l~~~~~~~~~~~~-~~~~~l~~a--~~~~~~~~~~~l~~~  123 (198)
                      +++|+++|++++..+. .+.++++++  ...|+.+++++|+..
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999888887664 467776654  466778888888764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.7e-28  Score=167.00  Aligned_cols=180  Identities=28%  Similarity=0.359  Sum_probs=161.2

Q ss_pred             HHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCC
Q psy14007         15 EDVVDFLLKNKSPVDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN   93 (198)
Q Consensus        15 ~~~~~~l~~~~~~~~~-~~~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~   93 (198)
                      .++|++|+++|++++. .|.+|.||||+||+.|+.+++++|++.|++++.++..+.++++.++..+..............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999987 588999999999999999999999999999999999999999999999888776666554333


Q ss_pred             -CCcCCCCCCcHHHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCCcceecCCCCCc
Q psy14007         94 -VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP  172 (198)
Q Consensus        94 -~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  172 (198)
                       .......+.++.+.+.........+.|...  +.+++..+..|.|||+.++..+..++++.+++++.+++..|..|.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITA--DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ccccccccccccccccccccchhhhhhhhhh--cccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence             333445678888889999999999999887  66788889999999999999999999999999999999999999999


Q ss_pred             cccCCChhHHHHHhhhcccccCCC
Q psy14007        173 LDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       173 ~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      +|+|+..|+.++++.|.+.+.+++
T Consensus       160 L~~A~~~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNFANRE  183 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cchhccccHHHHHHHHHHCCCCCC
Confidence            999999999999999999998864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=157.42  Aligned_cols=163  Identities=21%  Similarity=0.242  Sum_probs=142.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----cCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q psy14007         34 TNRTPLILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA  109 (198)
Q Consensus        34 ~g~~~L~~A~~~~~~~~~~~L~~----~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~  109 (198)
                      +|.||||+||.+|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|+..+.....+.++++.+.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999875    78999999999999999999999999999999999999999998999999988


Q ss_pred             hcCChHHHHHHHhccC------------------------------------CCCcccCCCCCCCHHHHHHHhCChhhHH
Q psy14007        110 SQGITPVVKLLLTQRL------------------------------------DIDVNITDAYGNTPLHYACEEKRLTDAK  153 (198)
Q Consensus       110 ~~~~~~~~~~l~~~~~------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~  153 (198)
                      ..+..+++..+.....                                    ..........+.+|++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            8877776655543211                                    0011233456889999999999999999


Q ss_pred             HHHHcCCCcceecCCCCCccccCCChhHHHHHhhhcccccCCC
Q psy14007        154 LLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIEPIVGDLP  196 (198)
Q Consensus       154 ~Ll~~g~~~~~~~~~g~t~~~~a~~~~~~~~~~~l~~~~~~~~  196 (198)
                      .++++|.+.+.++..|.||+++|+..++.++++.|.+.+.++.
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n  204 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  204 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999998765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-27  Score=147.70  Aligned_cols=120  Identities=28%  Similarity=0.306  Sum_probs=96.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCcHHHHHHhcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHH
Q psy14007         37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV  116 (198)
Q Consensus        37 ~~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  116 (198)
                      ++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++..+..|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhccCCCCcccCCC-CCCCHHHHH--HHhCChhhHHHHHHc
Q psy14007        117 VKLLLTQRLDIDVNITDA-YGNTPLHYA--CEEKRLTDAKLLVRC  158 (198)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~-~g~t~l~~a--~~~~~~~~~~~Ll~~  158 (198)
                      +++|+++  |++++..+. .+.||++.+  ...|+.+++++|+..
T Consensus        83 v~~Ll~~--ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVES--GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHT--TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHc--CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888887  456665543 467776654  456778888888754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2e-27  Score=170.30  Aligned_cols=139  Identities=19%  Similarity=0.233  Sum_probs=113.2

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhcCCCccccCCCCCcHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK-------LEIVRLLISNGADVNAKADGGHSALQ   73 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~~~L~~A~~~~~-------~~~~~~L~~~~~~~~~~~~~~~t~l~   73 (198)
                      +|+||||+|+..|+.++|++|+++|++++.+|..|.||||.|+..++       .++++++.   .....+|..|.||||
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILH  182 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCHHH
Confidence            58999999999999999999999999999999999999999998764       24444443   345667889999999


Q ss_pred             HHHhcCh----H--------HHHHHHHhcCCC-------------------------------------CCcCCCCCCcH
Q psy14007         74 YACSKGW----K--------EIAELLIHNHAN-------------------------------------VNIQDVRGATP  104 (198)
Q Consensus        74 ~a~~~~~----~--------~~~~~l~~~~~~-------------------------------------~~~~~~~~~~~  104 (198)
                      .++..+.    .        .++.++...+..                                     ++.+|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            8876432    1        123344332221                                     57788999999


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHH
Q psy14007        105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC  144 (198)
Q Consensus       105 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~  144 (198)
                      ||+|++.|+.+++++|+++  |++++.+|..|.|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~--GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDY--GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHT--TCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999998  6789999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.3e-26  Score=146.58  Aligned_cols=119  Identities=24%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCC------CCCCCCHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy14007          6 IHWAALSGREDVVDFLLKNKSPVDPK------DDTNRTPLILAAAA---GKLEIVRLLISNGADVNAKADGGHSALQYAC   76 (198)
Q Consensus         6 L~~A~~~g~~~~~~~l~~~~~~~~~~------~~~g~~~L~~A~~~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~   76 (198)
                      |+.|++.+++..+..++..|.++...      +..|+||||+|++.   ++.+++++|+++|++++.+|..|.||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            56788899998898888888776543      56788899988874   5678888888888888888888888888888


Q ss_pred             hcChHHHHHHHHhcCCCCCcCCCCCCcHHHHHHhcCChHHHHHHHhcc
Q psy14007         77 SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR  124 (198)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  124 (198)
                      ..|+.+++++|+++|++++.++..|.||||+|++.|+.+++++|++.+
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            888888888888888888888888888888888888888888888764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.1e-28  Score=177.56  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=124.6

Q ss_pred             CcchhHHHHHhcCcHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCcc---ccCCCCCcHHHHH
Q psy14007          1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKD--DTNRTPLILAAAAGKLEIVRLLISNGADVN---AKADGGHSALQYA   75 (198)
Q Consensus         1 ~g~~~L~~A~~~g~~~~~~~l~~~~~~~~~~~--~~g~~~L~~A~~~~~~~~~~~L~~~~~~~~---~~~~~~~t~l~~a   75 (198)
                      +|+||||+|++.|+.++|++|+++|++++..+  ..|.||||+|+..|+.+++++|++.|+...   ..+..+.||++.|
T Consensus       125 ~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A  204 (346)
T d2ajaa1         125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA  204 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHH
Confidence            47899999999999999999999999988765  458999999999999999999999987653   2344677888999


Q ss_pred             HhcChHHHHHHHHhcCCCCCcC---------------------------------CCC----------------CCcHHH
Q psy14007         76 CSKGWKEIAELLIHNHANVNIQ---------------------------------DVR----------------GATPLH  106 (198)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~---------------------------------~~~----------------~~~~l~  106 (198)
                      +..|+.+++++|++.|++++..                                 ...                ..++++
T Consensus       205 ~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~  284 (346)
T d2ajaa1         205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI  284 (346)
T ss_dssp             STTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHH
Confidence            9999999999999876432110                                 000                125666


Q ss_pred             HHHhcCChHHHHHHHhccCC---CCcccCCCCCCCHHHHHHHhCChhhHHHHHHc
Q psy14007        107 RAASQGITPVVKLLLTQRLD---IDVNITDAYGNTPLHYACEEKRLTDAKLLVRC  158 (198)
Q Consensus       107 ~a~~~~~~~~~~~l~~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  158 (198)
                      .+...+..+++++|++.+..   .+....+..|.||||+|++.|+.+++++|++.
T Consensus       285 ~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            77777888999999986421   11223345689999999999999999999964

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.3e-24  Score=140.39  Aligned_cols=122  Identities=25%  Similarity=0.306  Sum_probs=109.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccc------CCCCCcHHHHHHhc---ChHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q psy14007         38 PLILAAAAGKLEIVRLLISNGADVNAK------ADGGHSALQYACSK---GWKEIAELLIHNHANVNIQDVRGATPLHRA  108 (198)
Q Consensus        38 ~L~~A~~~~~~~~~~~L~~~~~~~~~~------~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  108 (198)
                      .|..|++.++...+..++..|.++...      +..|.||||+|+..   +..+++++|+++|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466788999999999999888776543      56789999999974   678999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHhccCCCCcccCCCCCCCHHHHHHHhCChhhHHHHHHcCCC
Q psy14007        109 ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR  161 (198)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  161 (198)
                      ++.|+.+++++|+++  |++++..|..|.||||+|+..|+.+++++|++.++.
T Consensus        89 ~~~~~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          89 CLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccc--CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999998  668899999999999999999999999999987654