Psyllid ID: psy14014

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
Protein Sequence
MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHcHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHccccccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHccHcc
Coil and Loop (DISEMBL)
massdsapddslyPIAVLIDELKNEDVQLRLNSIKKLSTIALALGqertrgelipfltetiyDEDEVLLALAEQLgtftpnvggpeyvhcllppleslatvEETVVRDKAVESLRLISaqhsphdleaHFVPLVqrlasgdwftsrtsacglfsvcyprvtAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMptlrqcsgdtswRVRYMVADKFTDlqkavgpeitkTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPyvkdlvadpnQHVKSALASVIMglspilgkhntvdHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGsewaqstvipkvVAMSRDQNYLHRMTCLFCINVLaeacgptvtanfLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIqsqvkpaldklngdtdvdVKYFAQEAISSIADSI
Flexible Loop (DISEMBL)
massdsapddslYPIAVLIDELKNEDVQLRLNSIKKLSTIAlalgqertrgelIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFrnlcqddtPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASllsqsdveqlVMPTlrqcsgdtswRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSewaqstvipkVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI
Low Complexity Region (SEG)
MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI
Disordered region (IsUnstruct)
***********LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQ**********
Disordered Region (DISOPRED)
******A***SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI
Disordered Region (DISEMBL)
*********DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI
Disordered Region (DISPRO)
*********DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	615	2.2.26 [Sep-21-2011]
P54612	589	Serine/threonine-protein	yes	N/A	0.926	0.967	0.734	0.0
Q76MZ3	589	Serine/threonine-protein	yes	N/A	0.926	0.967	0.734	0.0
P30153	589	Serine/threonine-protein	yes	N/A	0.926	0.967	0.732	0.0
Q32PI5	589	Serine/threonine-protein	yes	N/A	0.926	0.967	0.731	0.0
P54613	602	Serine/threonine-protein	no	N/A	0.944	0.965	0.748	0.0
Q4QQT4	601	Serine/threonine-protein	no	N/A	0.917	0.938	0.711	0.0
Q7TNP2	601	Serine/threonine-protein	no	N/A	0.912	0.933	0.711	0.0
P36179	591	Serine/threonine-protein	yes	N/A	0.943	0.981	0.754	0.0
P30154	601	Serine/threonine-protein	no	N/A	0.913	0.935	0.701	0.0
Q09543	590	Probable serine/threonine	yes	N/A	0.957	0.998	0.563	0.0

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445

Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498

Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558

Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.
Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445

Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498

Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558

Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445

Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498

Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558

Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/629 (73%), Positives = 513/629 (81%), Gaps = 59/629 (9%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+L KAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            +T++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445

Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498

Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558

Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPVLEKLTQDQDVDVKYFAQEALTVLS 587

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/604 (74%), Positives = 511/604 (84%), Gaps = 23/604 (3%)

Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEA
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
           HFVPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDTPMVRRAAA
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 199

Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248
            KLGE AKV+E+D +K++I+P+F NLA DEQDSVRLLAVEACVSIA LLSQ D+E LVMP
Sbjct: 200 SKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 259

Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
           TLRQ + D SWRVRYMVADKF++LQ+AVGP+IT  DL+ AFQ LLKD EAEVRAAAA+KV
Sbjct: 260 TLRQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKV 319

Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL 368
           ++ C+NL    +E IIM  ILP +K+LV+D NQHVKSALASVIMGLS ILGK NT++HLL
Sbjct: 320 KELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLL 379

Query: 369 PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKL 428
           PLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L     +P               
Sbjct: 380 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL-----LP--------------- 419

Query: 429 NALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAAT 488
              +IVELAED+KWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCM WLVDHVYAIREAAT
Sbjct: 420 ---AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 476

Query: 489 LNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLP 548
            NL KLV++FG+EWAQ+T++PKV+ M+ D NYLHRMT LFCINVL+EACG  +T   +LP
Sbjct: 477 NNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINVLSEACGQEITTKQMLP 536

Query: 549 TVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAI 608
            VL MAGD VANVRFNVAK+LQKIGPIL+T+ +Q +VKP L KL  D D+DVKYFAQEAI
Sbjct: 537 IVLKMAGDQVANVRFNVAKSLQKIGPILDTDALQEEVKPVLQKLGQDEDMDVKYFAQEAI 596

Query: 609 SSIA 612
           S +A
Sbjct: 597 SVLA 600

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/621 (71%), Positives = 498/621 (80%), Gaps = 57/621 (9%)

Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEA
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
           HFVPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDTPMVRRAAA
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248
            KLGE AKV+E+D +KT+I+P+F NLA DEQDSVRLLAVEACVSIA LLSQ D+E LVMP
Sbjct: 199 SKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 258

Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
           TLRQ + D SWRVRYMVADKF++LQKAVGP+I  +DL+ AFQ LL+D EAEVRAAAA+KV
Sbjct: 259 TLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKV 318

Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL 368
           R+ C+NL    +E +IM  ILPY+K+LV+D NQHVKSALASVIMGLS +LGK NT++HLL
Sbjct: 319 RELCENLPTEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLL 378

Query: 369 PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEY 411
           PLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY
Sbjct: 379 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 438

Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
           MPLLAGQLGVEFFDEKLN+                                        L
Sbjct: 439 MPLLAGQLGVEFFDEKLNS----------------------------------------L 458

Query: 472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
           CM WLVDHVYAIREAAT NL KLV++FG+EWAQ+T++PKV+ M+ D NYLHRMT LFCIN
Sbjct: 459 CMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCIN 518

Query: 532 VLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591
            L+EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L K
Sbjct: 519 ALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQK 578

Query: 592 LNGDTDVDVKYFAQEAISSIA 612
           L  D D+DVKYFAQEAIS +A
Sbjct: 579 LGQDEDMDVKYFAQEAISVLA 599

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

>sp|Q7TNP2|2AAB_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=1 SV=2

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/618 (71%), Positives = 496/618 (80%), Gaps = 57/618 (9%)

Query: 12  LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLAL 71
           LYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLAL
Sbjct: 22  LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLAL 81

Query: 72  AEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
           AEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEAHFV
Sbjct: 82  AEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFV 141

Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKL 191
           PLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDTPMVRRAAA KL
Sbjct: 142 PLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKL 201

Query: 192 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR 251
           GE AKV+E+D +KT+I+P+F NLA DEQDSVRLLAVEACVSIA LLSQ D+E LVMPTLR
Sbjct: 202 GEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQEDLEALVMPTLR 261

Query: 252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDF 311
           Q + D SWRVRYMVADKF++LQKAVGP+I  +DL+ AFQ LL+D EAEVRAAAA+KVR+ 
Sbjct: 262 QAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKVREL 321

Query: 312 CQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 371
           C+NL A  +E +IM  ILPY+K+LV+D NQHVKSALASVIMGLS +LGK NT++HLLPLF
Sbjct: 322 CENLPAEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLLPLF 381

Query: 372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYMPL 414
           L+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEYMPL
Sbjct: 382 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 441

Query: 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT 474
           LAGQLGVEFFDEKLN+                                        LCM 
Sbjct: 442 LAGQLGVEFFDEKLNS----------------------------------------LCMA 461

Query: 475 WLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLA 534
           WLVDHVYAIREAAT NL KLV++FG+EWAQ+T++PKV+ M+ D NYLHRMT LFCIN L+
Sbjct: 462 WLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALS 521

Query: 535 EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG 594
           EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL  
Sbjct: 522 EACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLGQ 581

Query: 595 DTDVDVKYFAQEAISSIA 612
           D D+DVKYFAQEAIS +A
Sbjct: 582 DEDMDVKYFAQEAISVLA 599

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Mus musculus (taxid: 10090)

>sp|P36179|2AAA_DROME Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster GN=Pp2A-29B PE=2 SV=4

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/603 (75%), Positives = 504/603 (83%), Gaps = 23/603 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SD + DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG+ERTR ELIPFLTET
Sbjct: 1   MAASDKSVDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGEERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALA+QLG FT  VGGPE+   L+PPLESLATVEETVVRDKAVESLR ++A+
Sbjct: 61  IYDEDEVLLALADQLGNFTSLVGGPEFAMYLIPPLESLATVEETVVRDKAVESLRTVAAE 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE H VP +QRL SGDWFTSRTSACGLFSVCYPRVT  VKAELR++FR LCQD+T
Sbjct: 121 HSAQDLEIHVVPTLQRLVSGDWFTSRTSACGLFSVCYPRVTQPVKAELRANFRKLCQDET 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKVVE +YLK+D+IP FV LAQD+QDSVRLLAVEACVSIA LL Q 
Sbjct: 181 PMVRRAAANKLGEFAKVVETEYLKSDLIPNFVQLAQDDQDSVRLLAVEACVSIAQLLPQD 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVE LV+PTLRQC+ D+SWRVRYMVA+KF DLQKAVGPEIT+ DLV AFQ LLKD+EAEV
Sbjct: 241 DVEHLVLPTLRQCASDSSWRVRYMVAEKFVDLQKAVGPEITRVDLVPAFQYLLKDAEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAA A KV+DFC NLD  NQ  II++ ILPYV+DLV+DPN HVKSALASVIMGLSP+LG 
Sbjct: 301 RAAVATKVKDFCANLDKVNQVQIILSSILPYVRDLVSDPNPHVKSALASVIMGLSPMLGA 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           + TV+ LLPLFL QLKDECPEVRLNIISNLDCVN+VIGIQQ    L     +P       
Sbjct: 361 YQTVEQLLPLFLIQLKDECPEVRLNIISNLDCVNDVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVRLAIIEYMP LAGQLG EFFD+KL  LCM WL DHV
Sbjct: 409 -----------AIVELAEDSKWRVRLAIIEYMPALAGQLGQEFFDQKLRGLCMGWLNDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLN+KKLVEQFG+ WA+  +IP ++ MSR++NYLHRMTCLFC+NVLAE CG  
Sbjct: 458 YAIREAATLNMKKLVEQFGAPWAEQAIIPMILVMSRNKNYLHRMTCLFCLNVLAEVCGTD 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   LLPTVL +A D VANVRFNVAKTLQKI P LE +VI +QVKP LDKLN DTDVDV
Sbjct: 518 ITTKLLLPTVLLLAADPVANVRFNVAKTLQKISPFLEASVIDAQVKPTLDKLNTDTDVDV 577

Query: 601 KYF 603
           K+F
Sbjct: 578 KHF 580

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Drosophila melanogaster (taxid: 7227)

>sp|P30154|2AAB_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/619 (70%), Positives = 495/619 (79%), Gaps = 57/619 (9%)

Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLA
Sbjct: 21  SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA 80

Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
           LAEQLG FT  VGGP++ HCLLPPLE+LATVEETVVRDKAVESLR IS +H+P  LEA+F
Sbjct: 81  LAEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRDKAVESLRQISQEHTPVALEAYF 140

Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGK 190
           VPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R  FR+LC DDTPMVRRAAA K
Sbjct: 141 VPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQQFRSLCSDDTPMVRRAAASK 200

Query: 191 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 250
           LGE AKV+E+D +K++I+P+F +LA DEQDSVRLLAVEACVSIA LLSQ D+E LVMPTL
Sbjct: 201 LGEFAKVLELDSVKSEIVPLFTSLASDEQDSVRLLAVEACVSIAQLLSQDDLETLVMPTL 260

Query: 251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRD 310
           RQ + D SWRVRYMVAD+F++LQKA+GP+IT  DL+ AFQ LLKD EAEVRAAAA+KV++
Sbjct: 261 RQAAEDKSWRVRYMVADRFSELQKAMGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKVKE 320

Query: 311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
             +NL   ++E IIM  ILPY+K+LV+D NQHVKSALASVIMGLS ILGK NT++HLLPL
Sbjct: 321 LGENLPIEDRETIIMNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPL 380

Query: 371 FLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYMP 413
           FL+QLKDECP+VRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEYMP
Sbjct: 381 FLAQLKDECPDVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 440

Query: 414 LLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM 473
           LLAGQLGVEFFDEKLN+                                        LCM
Sbjct: 441 LLAGQLGVEFFDEKLNS----------------------------------------LCM 460

Query: 474 TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVL 533
            WLVDHVYAIREAAT NL KLV++FG+EWAQ+T++PKV+ M+ D NYLHRMT LFCIN L
Sbjct: 461 AWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINAL 520

Query: 534 AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 593
           +EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL 
Sbjct: 521 SEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKLG 580

Query: 594 GDTDVDVKYFAQEAISSIA 612
            D D+DVKYFAQEAIS +A
Sbjct: 581 QDEDMDVKYFAQEAISVLA 599

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Homo sapiens (taxid: 9606)

>sp|Q09543|2AAA_CAEEL Probable serine/threonine-protein phosphatase PP2A regulatory subunit OS=Caenorhabditis elegans GN=paa-1 PE=3 SV=2

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/612 (56%), Positives = 442/612 (72%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           M+  + A DD+LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALG ERTR ELI FLT+T
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLL LAEQLG FTP VGGP++VHCLL PLE+LATVEETVVRDKAVESLR I+ +
Sbjct: 61  IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS   LE HFVP+++RLA+GDWFTSRTSACGLFSV YPRV+  +K+EL+S FR LC+DDT
Sbjct: 121 HSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV E   +   +     +L  DEQDSVRLL VE+ ++  +LL ++
Sbjct: 181 PMVRRAAAAKLGEFAKVFEKTAVIEGLHSSLTDLHVDEQDSVRLLTVESAIAFGTLLDKA 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           + ++L+ P L +   D SWRVRYMVA+K  ++Q  +G ++  T LV  +  LLKD E EV
Sbjct: 241 NKKKLIEPILIELFDDKSWRVRYMVAEKLIEIQNVLGEDMDTTHLVNMYTNLLKDPEGEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           R AA  ++++F  NL    ++NII   +L   K+LV D NQ VKS LA VIMGL+P++GK
Sbjct: 301 RCAATQRLQEFALNLPEDKRQNIICNSLLNVAKELVTDGNQLVKSELAGVIMGLAPLIGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
             TV  LLP+++  L D+ PEVRLNIIS+LD VNEVIG  Q    L     +P       
Sbjct: 361 EQTVSELLPIYMQLLNDQTPEVRLNIISSLDKVNEVIGAAQLSTSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IV LAED KWRVRLAI+++MPLLA QLG EFFDEKL  LC+ WL DHV
Sbjct: 409 -----------AIVGLAEDGKWRVRLAIVQFMPLLASQLGQEFFDEKLLPLCLNWLTDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           ++IREA+TL +K+L ++FG +WA + ++PK+  + +D NYL RMTCLFC+N L+EA    
Sbjct: 458 FSIREASTLIMKELTQKFGGQWASTNIVPKMQKLQKDTNYLQRMTCLFCLNTLSEAMTQE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
                ++P V ++  D+V NVRFN AK+L++IG  L  + + S+VKP L+KL  D+D DV
Sbjct: 518 QILKEIMPIVKDLVEDDVPNVRFNAAKSLKRIGKNLTPSTLTSEVKPLLEKLGKDSDFDV 577

Query: 601 KYFAQEAISSIA 612
           +YF++EA +S+ 
Sbjct: 578 RYFSEEAKNSLG 589

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
307189141	601	Serine/threonine-protein phosphatase 2A	0.957	0.980	0.831	0.0
322787434	589	hypothetical protein SINV_04974 [Solenop	0.957	1.0	0.830	0.0
307201783	590	Serine/threonine-protein phosphatase 2A	0.957	0.998	0.831	0.0
332020375	603	Serine/threonine-protein phosphatase 2A	0.957	0.976	0.828	0.0
156547500	590	PREDICTED: serine/threonine-protein phos	0.957	0.998	0.828	0.0
328782568	590	PREDICTED: serine/threonine-protein phos	0.957	0.998	0.812	0.0
383860430	602	PREDICTED: serine/threonine-protein phos	0.962	0.983	0.798	0.0
350402824	590	PREDICTED: serine/threonine-protein phos	0.957	0.998	0.807	0.0
340728831	590	PREDICTED: serine/threonine-protein phos	0.957	0.998	0.805	0.0
86515392	590	protein phosphatase 2, regulatory subuni	0.957	0.998	0.799	0.0

>gi|307189141|gb|EFN73589.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Camponotus floridanus]

 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/612 (83%), Positives = 546/612 (89%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV+  +KAELR+HFR+LCQDDT
Sbjct: 121 HSPADLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVSPAIKAELRNHFRSLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA KLGE AKVVE++YLK+D+IPMFV LAQDEQDSVRLLAVEACVSIA+LL Q 
Sbjct: 181 PMARRSAASKLGEFAKVVEIEYLKSDLIPMFVILAQDEQDSVRLLAVEACVSIAALLQQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD +NQE+IIMT ILP VK+LVADPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDQFNQESIIMTNILPIVKELVADPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFLSQL+DECPEVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLSQLRDECPEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKT Q+IGP LE + +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTKVMLPTVLTMATDNVANVRFNVAKTFQRIGPFLEPSAVQTQVKPILDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787434|gb|EFZ13522.1| hypothetical protein SINV_04974 [Solenopsis invicta]

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/612 (83%), Positives = 547/612 (89%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSNTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPE+VHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEFVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV+  +KAELR+HFR+LCQDDT
Sbjct: 121 HSPADLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVSPAIKAELRNHFRSLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA KLGE AKVVE++YLK+D+IPMFV LAQDEQDSVRLLAVEACVSIA+LL Q 
Sbjct: 181 PMARRSAASKLGEFAKVVEIEYLKSDLIPMFVILAQDEQDSVRLLAVEACVSIAALLQQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD +NQE+IIMT ILP VK+LVADPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDQFNQESIIMTNILPIVKELVADPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFLSQL+DECPEVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLSQLRDECPEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG +WAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPDWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP LE + +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTKVMLPTVLTMATDNVANVRFNVAKTLQRIGPFLEPSAVQTQVKPILDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201783|gb|EFN81456.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Harpegnathos saltator]

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/612 (83%), Positives = 544/612 (88%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV   +K ELR+HFR LCQDDT
Sbjct: 121 HSPVDLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVGPAIKTELRNHFRGLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA KLGE AKVVE++YLK+D+IPMFV LAQDEQDSVRLLAVEACVSIA+LL Q 
Sbjct: 181 PMARRSAASKLGEFAKVVEIEYLKSDLIPMFVILAQDEQDSVRLLAVEACVSIAALLQQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD +NQE+IIMT ILP VK+LVADPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDQFNQESIIMTNILPIVKELVADPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFLSQL+DECPEVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLSQLRDECPEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP LE + +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTKVMLPTVLIMATDNVANVRFNVAKTLQRIGPFLEPSAVQTQVKPILDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020375|gb|EGI60796.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Acromyrmex echinatior]

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/612 (82%), Positives = 545/612 (89%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSNTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPE+VHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEFVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV+  +KAELR+HFR+LCQDDT
Sbjct: 121 HSPADLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVSPVIKAELRNHFRSLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA KLGE AKVVE++YLK+D+IPMFV LAQDEQDSVRLLAVEACVSIA+LL Q 
Sbjct: 181 PMARRSAASKLGEFAKVVEIEYLKSDLIPMFVILAQDEQDSVRLLAVEACVSIAALLQQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQN+D  NQE IIMT ILP VK+LVADPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNIDQVNQEFIIMTNILPIVKELVADPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFLSQL+DECPEVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLSQLRDECPEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG +WAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPDWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP LE + +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTKVMLPTVLTMATDNVANVRFNVAKTLQRIGPFLEPSAVQTQVKPILDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547500|ref|XP_001600229.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Nasonia vitripennis]

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/612 (82%), Positives = 543/612 (88%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSTADDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRTELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGP+YVHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPDYVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCY RV+  +KAELR+HFRNLCQDDT
Sbjct: 121 HSPSDLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYYRVSQPIKAELRNHFRNLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRR+AA KLGE AKVVE +YLK+D+I MFV LAQDEQDSVRLLAVEACVSIA+LL Q 
Sbjct: 181 PMVRRSAAAKLGEFAKVVENEYLKSDLIAMFVILAQDEQDSVRLLAVEACVSIATLLQQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVG EIT+TDLV AFQ+LLKD+EAEV
Sbjct: 241 DVEQLVMPTLRQCATDQSWRVRYMVADKFTDLQKAVGQEITRTDLVPAFQVLLKDTEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD + QE+IIM  ILP+VK+LVADPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDPFYQESIIMNNILPFVKELVADPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
            NT++HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ    L     +P       
Sbjct: 361 INTIEHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP L+ N +Q+QVKP LDKLN DTDVDV
Sbjct: 518 ITTEVMLPTVLAMANDNVANVRFNVAKTLQRIGPHLKPNAVQTQVKPVLDKLNTDTDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782568|ref|XP_001120202.2| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis mellifera] gi|380013196|ref|XP_003690652.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis florea]

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/612 (81%), Positives = 536/612 (87%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTE+
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTES 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           +YDEDEVLLALAEQLG FTP VGGPEYVHCLL PLESLATVEETVVRDKAVESLR I+AQ
Sbjct: 61  MYDEDEVLLALAEQLGQFTPLVGGPEYVHCLLKPLESLATVEETVVRDKAVESLRTIAAQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE  FVPL+ RLA+GDWFTSRTSACGLFSVCYPRV+  VKA LR+HFRNLCQDDT
Sbjct: 121 HSSTDLEEQFVPLIHRLATGDWFTSRTSACGLFSVCYPRVSPTVKACLRNHFRNLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA  LGE AKV+E++Y+K D+IPMFV LAQDEQDSVRLLA+EACVSIA+LL Q 
Sbjct: 181 PMARRSAASHLGEFAKVMEIEYVKADLIPMFVILAQDEQDSVRLLAIEACVSIAALLPQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD +NQE+IIMT ILP VK+LV+DPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDKFNQESIIMTQILPIVKELVSDPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFLSQL+DEC EVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLSQLRDECSEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVR AIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRYAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE   +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTRVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPCAVQAQVKPVLDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860430|ref|XP_003705692.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Megachile rotundata]

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/615 (79%), Positives = 536/615 (87%), Gaps = 23/615 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDS+YPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTE+
Sbjct: 1   MAASDSTTDDSIYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTES 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           +YDEDEVLLALAEQLG FTP VGGPE+VHCLL PLE+LATVEETVVRDKAVESLR+++AQ
Sbjct: 61  MYDEDEVLLALAEQLGQFTPLVGGPEHVHCLLKPLETLATVEETVVRDKAVESLRILAAQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE  FVPL+ R+A GDWFTSRTSAC LFSVCYPRV+  VKA LR+HFRNLCQDDT
Sbjct: 121 HSPTDLEEQFVPLILRIAIGDWFTSRTSACALFSVCYPRVSPAVKACLRNHFRNLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA  LGE AKV+E++Y+K D+IPMFV LAQDEQDSVRLL VEACVSIASLL Q 
Sbjct: 181 PMARRSAASNLGEFAKVMEIEYVKADLIPMFVILAQDEQDSVRLLTVEACVSIASLLPQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQL+MPTLRQC  D SWRVRYMVADKFTDLQKA+GPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLLMPTLRQCVSDQSWRVRYMVADKFTDLQKALGPEITKTDLVPAFQILLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD +NQE+IIMT ILP VK+LV+DPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDKFNQESIIMTNILPIVKELVSDPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFLSQL+DE  EVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLSQLRDEYSEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVR AIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRYAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CGP 
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGPE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE + +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTKVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPSAVQTQVKPVLDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIADSI 615
           KYFA EAI+ IA +I
Sbjct: 578 KYFASEAIAGIAGNI 592

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402824|ref|XP_003486616.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Bombus impatiens]

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/612 (80%), Positives = 532/612 (86%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTE+
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTES 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           +YDEDEVLLALAEQLG FTP VGGPEYVHCLL PLESLATVEETVVRDKAVESLR I+AQ
Sbjct: 61  MYDEDEVLLALAEQLGQFTPLVGGPEYVHCLLKPLESLATVEETVVRDKAVESLRTIAAQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE  FVPL+ RLA+GDWFTSRTSACGLFSVCY RV   VKA LR+HFRNLCQDDT
Sbjct: 121 HSSTDLEEQFVPLIHRLATGDWFTSRTSACGLFSVCYQRVNPSVKACLRNHFRNLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA  LGE AKV+E++Y+K D+IPMFV LAQDEQDSVRLLA+EACVSIA+LL Q 
Sbjct: 181 PMARRSAASHLGEFAKVMEIEYVKADLIPMFVILAQDEQDSVRLLAIEACVSIAALLPQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD  NQE+IIMT ILP VK+LV+DPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDKSNQESIIMTQILPIVKELVSDPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           +NT++HLLPLFLSQL+DEC EVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 YNTIEHLLPLFLSQLRDECSEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVR AIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRYAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CG  
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGQE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE   +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTRVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPCAVQAQVKPVLDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728831|ref|XP_003402717.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Bombus terrestris]

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/612 (80%), Positives = 532/612 (86%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTE+
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTES 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           +YDEDEVLLALAEQLG FTP VGGPEYV+CLL PLESLATVEETVVRDKAVESLR I+AQ
Sbjct: 61  MYDEDEVLLALAEQLGQFTPLVGGPEYVYCLLKPLESLATVEETVVRDKAVESLRTIAAQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE  FVPL+ RLA+GDWFTSRTSACGLFSVCY RV   VKA LR+HFRNLCQDDT
Sbjct: 121 HSSTDLEEQFVPLINRLATGDWFTSRTSACGLFSVCYQRVNPSVKACLRNHFRNLCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PM RR+AA  LGE AKV+E++Y+K D+IPMFV LAQDEQDSVRLLA+EACVSIA+LL Q 
Sbjct: 181 PMARRSAASHLGEFAKVMEIEYVKADLIPMFVILAQDEQDSVRLLAIEACVSIAALLPQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           DVEQLVMPTLRQC+ D SWRVRYMVADKFTDLQKAVGPEITKTDLV AFQ+LLKD EAEV
Sbjct: 241 DVEQLVMPTLRQCASDQSWRVRYMVADKFTDLQKAVGPEITKTDLVPAFQVLLKDIEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAA+KVRDFCQNLD  NQE+IIMT ILP VK+LV+DPNQHVKSALASVIMGLSPILGK
Sbjct: 301 RAAAADKVRDFCQNLDKSNQESIIMTQILPIVKELVSDPNQHVKSALASVIMGLSPILGK 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           +NT++HLLPLFLSQL+DEC EVRLNIISNL+CVNEVIGIQQ    L     +P       
Sbjct: 361 YNTIEHLLPLFLSQLRDECSEVRLNIISNLECVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVR AIIEYMPLLAGQLGVEFFDEKLN+LCMTWLVDHV
Sbjct: 409 -----------AIVELAEDSKWRVRYAIIEYMPLLAGQLGVEFFDEKLNSLCMTWLVDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           YAIREAATLNLKKLVE+FG EWAQ+TVIPKV+AMSRDQNYLHRMTCLFCINVLAE CG  
Sbjct: 458 YAIREAATLNLKKLVEKFGPEWAQNTVIPKVLAMSRDQNYLHRMTCLFCINVLAEVCGQE 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE   +Q+QVKP LDKLN D+DVDV
Sbjct: 518 ITTRVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPCAVQAQVKPVLDKLNTDSDVDV 577

Query: 601 KYFAQEAISSIA 612
           KYFA EAI+ IA
Sbjct: 578 KYFASEAIAGIA 589

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|86515392|ref|NP_001034525.1| protein phosphatase 2, regulatory subunit A, alpha isoform [Tribolium castaneum] gi|60098058|emb|CAI45288.1| phosphatase [Tribolium castaneum] gi|270013845|gb|EFA10293.1| hypothetical protein TcasGA2_TC012508 [Tribolium castaneum]

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/612 (79%), Positives = 536/612 (87%), Gaps = 23/612 (3%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDSA DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSAGDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLG+F   VGGPEY +CLLPPLESLATVEETVVRDKAVESLR ++ Q
Sbjct: 61  IYDEDEVLLALAEQLGSFITLVGGPEYAYCLLPPLESLATVEETVVRDKAVESLRAVAQQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRL++GDWFTSRTSACGLFSVCYPRV+A +KA+LRSHFR LCQDDT
Sbjct: 121 HSPADLENHFVPLVQRLSAGDWFTSRTSACGLFSVCYPRVSAQMKADLRSHFRALCQDDT 180

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGELA+VVE++YLKTD+IPMF++L QDEQDSVRLLAVEACVS ASL  Q 
Sbjct: 181 PMVRRAAATKLGELAQVVELEYLKTDLIPMFLSLTQDEQDSVRLLAVEACVSFASLFQQE 240

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E  VMPT+R C+GDTSWRVRYMVADKFTDLQKAVGPEIT+TDLV AFQ LLKD+EAEV
Sbjct: 241 DIEMFVMPTVRNCTGDTSWRVRYMVADKFTDLQKAVGPEITRTDLVPAFQNLLKDTEAEV 300

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAAANKV+DFCQNLD  +QE+IIM  ILP VK+LVADPNQHVKSALASVIMGLSPILG+
Sbjct: 301 RAAAANKVKDFCQNLDKAHQESIIMNNILPCVKELVADPNQHVKSALASVIMGLSPILGR 360

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG 420
           HNT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGIQQ    L     +P       
Sbjct: 361 HNTIEHLLPLFLTQLKDECPEVRLNIISNLDCVNEVIGIQQLSQSL-----LP------- 408

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
                      +IVELAEDSKWRVR AIIEYMPLLAGQLG EFFDEKLNALCMTWL+DHV
Sbjct: 409 -----------AIVELAEDSKWRVRSAIIEYMPLLAGQLGREFFDEKLNALCMTWLMDHV 457

Query: 481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT 540
           +AIREAATLNL+KLV+QFG+EWA++T+IPKV+AMSRDQNYL+RMTCLFCINVLAEACG  
Sbjct: 458 FAIREAATLNLRKLVDQFGAEWAETTIIPKVLAMSRDQNYLYRMTCLFCINVLAEACGSD 517

Query: 541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDV 600
           +T   LLPTVL+MA D VANVRFNVAKTLQKI P L+  VIQ QVKP LDKL  D+D+DV
Sbjct: 518 ITTRLLLPTVLSMANDKVANVRFNVAKTLQKIAPQLDQAVIQPQVKPVLDKLTADSDIDV 577

Query: 601 KYFAQEAISSIA 612
           KY A EAI+ IA
Sbjct: 578 KYSASEAIAGIA 589

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
WB|WBGene00003901	590	paa-1 [Caenorhabditis elegans	0.652	0.679	0.615	2.1e-178
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.663	0.692	0.813	1.1e-172
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.663	0.692	0.813	1.1e-172
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.663	0.692	0.813	1.1e-172
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.663	0.692	0.813	1.1e-172
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.663	0.692	0.810	3e-172
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.663	0.692	0.810	3.8e-172
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.663	0.692	0.808	1.3e-171
ZFIN|ZDB-GENE-040426-2700	589	ppp2r1a "protein phosphatase 2	0.912	0.952	0.620	3.6e-169
FB|FBgn0260439	591	Pp2A-29B "Protein phosphatase	0.666	0.693	0.793	9.4e-169

WB|WBGene00003901 paa-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 1220 (434.5 bits), Expect = 2.1e-178, Sum P(2) = 2.1e-178
 Identities = 247/401 (61%), Positives = 304/401 (75%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             M+  + A DD+LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALG ERTR ELI FLT+T
Sbjct:     1 MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLL LAEQLG FTP VGGP++VHCLL PLE+LATVEETVVRDKAVESLR I+ +
Sbjct:    61 IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HS   LE HFVP+++RLA+GDWFTSRTSACGLFSV YPRV+  +K+EL+S FR LC+DDT
Sbjct:   121 HSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDT 180

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV E   +   +     +L  DEQDSVRLL VE+ ++  +LL ++
Sbjct:   181 PMVRRAAAAKLGEFAKVFEKTAVIEGLHSSLTDLHVDEQDSVRLLTVESAIAFGTLLDKA 240

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             + ++L+ P L +   D SWRVRYMVA+K  ++Q  +G ++  T LV  +  LLKD E EV
Sbjct:   241 NKKKLIEPILIELFDDKSWRVRYMVAEKLIEIQNVLGEDMDTTHLVNMYTNLLKDPEGEV 300

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             R AA  ++++F  NL    ++NII   +L   K+LV D NQ VKS LA VIMGL+P++GK
Sbjct:   301 RCAATQRLQEFALNLPEDKRQNIICNSLLNVAKELVTDGNQLVKSELAGVIMGLAPLIGK 360

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 401
               TV  LLP+++  L D+ PEVRLNIIS+LD VNEVIG  Q
Sbjct:   361 EQTVSELLPIYMQLLNDQTPEVRLNIISSLDKVNEVIGAAQ 401

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=IPI

GO:0005813 "centrosome" evidence=IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0017151 "DEAD/H-box RNA helicase binding" evidence=IPI

GO:0072686 "mitotic spindle" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
 Identities = 335/412 (81%), Positives = 370/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
 Identities = 335/412 (81%), Positives = 370/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
 Identities = 335/412 (81%), Positives = 370/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
 Identities = 335/412 (81%), Positives = 370/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
 Identities = 334/412 (81%), Positives = 370/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
 Identities = 334/412 (81%), Positives = 370/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              +T++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1668 (592.2 bits), Expect = 1.3e-171, P = 1.3e-171
 Identities = 333/412 (80%), Positives = 369/412 (89%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKFT+L KAVGPEITKTDLV AFQ L+KD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
              +T++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E
Sbjct:   359 DSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 410

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

ZFIN|ZDB-GENE-040426-2700 ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Danio rerio (taxid:7955)]

 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 359/579 (62%), Positives = 416/579 (71%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA +DS  DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAGADS--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLG FT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGNFTMLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRKISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLE HF PLV+RLASGDWFTSRTSACGLFSVCYPRV++ VKAE+R HFR LC DDT
Sbjct:   119 HSPVDLEVHFEPLVKRLASGDWFTSRTSACGLFSVCYPRVSSTVKAEIRQHFRTLCSDDT 178

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKV+E++Y+K+DII +F  LA DEQDSVRLLAVEA VSIA+LL Q 
Sbjct:   179 PMVRRAAASKLGEFAKVLELEYVKSDIISLFTALASDEQDSVRLLAVEAGVSIATLLPQE 238

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             D+E LVMPTLRQ + D SWRVRYMVADKF+DLQKAVGPEITK DLV AFQ LLKD EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFSDLQKAVGPEITKNDLVPAFQNLLKDCEAEV 298

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAAAANKV++FC+NL   ++E IIMT+ILP VK+LV+D NQHVKSALASVIMGLS ILGK
Sbjct:   299 RAAAANKVKEFCENLPEDSRETIIMTHILPCVKELVSDTNQHVKSALASVIMGLSTILGK 358

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIEYMPLLAGQ 418
              NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q    L  AI+E       +
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   419 LG---VEFFDEKLNALSIVELAE-----------DSKWRVRLAIIEYMPLLAGQLGVEFF 464
             +    +E+       L +    E           D  + +R A    +  L  + G E+ 
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATCNLMKLVEKFGAEWA 478

Query:   465 DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRM 524
                +    +    D  Y  R      +  L E  G E     ++P V+ MS DQ    R 
Sbjct:   479 QNTIVPKVLGMANDPNYLHRMTTLFCINALSEVCGQEITTKHMLPVVLKMSNDQVANVRF 538

Query:   525 TCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRF 563
                  +  +      +     + P +  +A D   +V++
Sbjct:   539 NVAKSLQKIGPVLDSSCLQTEVKPVLEKLASDQDMDVKY 577

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0260439 Pp2A-29B "Protein phosphatase 2A at 29B" [Drosophila melanogaster (taxid:7227)]

 Score = 1641 (582.7 bits), Expect = 9.4e-169, P = 9.4e-169
 Identities = 327/412 (79%), Positives = 360/412 (87%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA+SD + DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG+ERTR ELIPFLTET
Sbjct:     1 MAASDKSVDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGEERTRSELIPFLTET 60

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALA+QLG FT  VGGPE+   L+PPLESLATVEETVVRDKAVESLR ++A+
Sbjct:    61 IYDEDEVLLALADQLGNFTSLVGGPEFAMYLIPPLESLATVEETVVRDKAVESLRTVAAE 120

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HS  DLE H VP +QRL SGDWFTSRTSACGLFSVCYPRVT  VKAELR++FR LCQD+T
Sbjct:   121 HSAQDLEIHVVPTLQRLVSGDWFTSRTSACGLFSVCYPRVTQPVKAELRANFRKLCQDET 180

Query:   181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             PMVRRAAA KLGE AKVVE +YLK+D+IP FV LAQD+QDSVRLLAVEACVSIA LL Q 
Sbjct:   181 PMVRRAAANKLGEFAKVVETEYLKSDLIPNFVQLAQDDQDSVRLLAVEACVSIAQLLPQD 240

Query:   241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
             DVE LV+PTLRQC+ D+SWRVRYMVA+KF DLQKAVGPEIT+ DLV AFQ LLKD+EAEV
Sbjct:   241 DVEHLVLPTLRQCASDSSWRVRYMVAEKFVDLQKAVGPEITRVDLVPAFQYLLKDAEAEV 300

Query:   301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
             RAA A KV+DFC NLD  NQ  II++ ILPYV+DLV+DPN HVKSALASVIMGLSP+LG 
Sbjct:   301 RAAVATKVKDFCANLDKVNQVQIILSSILPYVRDLVSDPNPHVKSALASVIMGLSPMLGA 360

Query:   361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIE 410
             + TV+ LLPLFL QLKDECPEVRLNIISNLDCVN+VIGIQQ    L  AI+E
Sbjct:   361 YQTVEQLLPLFLIQLKDECPEVRLNIISNLDCVNDVIGIQQLSQSLLPAIVE 412

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0006470 "protein dephosphorylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0008287 "protein serine/threonine phosphatase complex" evidence=ISS;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

GO:0007098 "centrosome cycle" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0005814 "centriole" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.7545	0.9430	0.9813	yes	N/A
Q54QR9	2AAA_DICDI	No assigned EC number	0.5418	0.9430	0.9931	yes	N/A
P54613	2AAB_PIG	No assigned EC number	0.7483	0.9447	0.9651	no	N/A
Q32PI5	2AAA_BOVIN	No assigned EC number	0.7313	0.9268	0.9677	yes	N/A
Q7TNP2	2AAB_MOUSE	No assigned EC number	0.7119	0.9121	0.9334	no	N/A
Q38845	2AAA_ARATH	No assigned EC number	0.5528	0.9414	0.9846	no	N/A
P30154	2AAB_HUMAN	No assigned EC number	0.7011	0.9138	0.9351	no	N/A
P30153	2AAA_HUMAN	No assigned EC number	0.7329	0.9268	0.9677	yes	N/A
P31383	2AAA_YEAST	No assigned EC number	0.4037	0.9170	0.8881	yes	N/A
P54612	2AAA_PIG	No assigned EC number	0.7344	0.9268	0.9677	yes	N/A
Q38950	2AAB_ARATH	No assigned EC number	0.5605	0.9365	0.9812	yes	N/A
Q09543	2AAA_CAEEL	No assigned EC number	0.5637	0.9577	0.9983	yes	N/A
Q38951	2AAG_ARATH	No assigned EC number	0.5572	0.9365	0.9812	no	N/A
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.7344	0.9268	0.9677	yes	N/A
Q9UT08	2AAA_SCHPO	No assigned EC number	0.4967	0.9382	0.9779	yes	N/A
Q4QQT4	2AAB_RAT	No assigned EC number	0.7117	0.9170	0.9384	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	615
KOG0211|consensus	759		100.0
KOG0211|consensus	759		100.0
KOG2023|consensus	885		100.0
KOG2171|consensus	1075		100.0
KOG2171|consensus	1075		99.97
KOG0213|consensus	1172		99.97
KOG2023|consensus	885		99.96
KOG0213|consensus	1172		99.96
KOG1241|consensus	859		99.95
KOG1241|consensus	859		99.94
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.94
KOG1824|consensus	1233		99.93
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.92
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.9
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.9
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.88
KOG1824|consensus	1233		99.88
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.88
KOG1242|consensus	569		99.86
KOG1242|consensus	569		99.86
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.82
KOG0915|consensus	1702		99.81
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.81
PRK09687	280	putative lyase; Provisional	99.8
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.8
PTZ00429	746	beta-adaptin; Provisional	99.79
PRK09687	280	putative lyase; Provisional	99.79
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.79
KOG0212|consensus	675		99.77
KOG0915|consensus	1702		99.71
KOG0212|consensus	675		99.7
KOG1240|consensus	1431		99.68
PTZ00429	746	beta-adaptin; Provisional	99.67
KOG0166|consensus	514		99.66
KOG1240|consensus	1431		99.61
KOG0166|consensus	514		99.6
KOG4224|consensus	550		99.48
KOG1943|consensus	1133		99.47
KOG1060|consensus	968		99.45
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.44
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.37
KOG1943|consensus	1133		99.35
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.34
KOG4224|consensus	550		99.33
KOG1060|consensus	968		99.31
KOG1061|consensus	734		99.26
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.26
KOG2259|consensus	823		99.22
KOG1062|consensus	866		99.21
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.21
KOG1020|consensus	1692		99.17
KOG1061|consensus	734		99.16
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.16
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.16
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.15
KOG1991|consensus	1010		99.15
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.15
KOG1059|consensus	877		99.11
TIGR02270	410	conserved hypothetical protein. Members are found	99.11
KOG1243|consensus	690		99.1
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.08
KOG1020|consensus	1692		99.07
KOG1062|consensus	866		99.06
KOG1991|consensus	1010		99.05
KOG1248|consensus	1176		99.04
KOG2259|consensus	823		99.02
TIGR02270	410	conserved hypothetical protein. Members are found	99.02
KOG1248|consensus	1176		99.02
KOG4535|consensus	728		98.99
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.94
KOG1243|consensus	690		98.91
KOG1059|consensus	877		98.87
KOG2274|consensus	1005		98.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.79
KOG1058|consensus	948		98.77
KOG1992|consensus	960		98.76
KOG1078|consensus	865		98.75
KOG1820|consensus	815		98.74
KOG1078|consensus	865		98.69
KOG2062|consensus	929		98.66
KOG0413|consensus	1529		98.66
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.64
KOG1058|consensus	948		98.63
KOG1077|consensus	938		98.62
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.62
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.62
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.58
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.56
KOG4535|consensus	728		98.52
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.5
KOG1820|consensus	815		98.49
KOG2137|consensus	700		98.47
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.46
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.44
KOG1293|consensus	678		98.43
KOG1293|consensus	678		98.42
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.41
KOG0414|consensus	1251		98.39
KOG2274|consensus	1005		98.39
KOG0567|consensus	289		98.35
KOG0168|consensus	1051		98.35
KOG1992|consensus	960		98.34
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.33
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.32
KOG2062|consensus	929		98.28
KOG2032|consensus	533		98.27
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.26
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.26
KOG2032|consensus	533		98.26
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.2
KOG0567|consensus	289		98.2
KOG1077|consensus	938		98.19
KOG4653|consensus	982		98.18
KOG4413|consensus	524		98.17
KOG2956|consensus	516		98.16
KOG0413|consensus	1529		98.14
KOG2137|consensus	700		98.13
KOG1967|consensus	1030		98.12
KOG0168|consensus	1051		98.1
KOG2025|consensus	892		98.09
KOG4413|consensus	524		98.07
KOG2956|consensus	516		98.06
KOG4653|consensus	982		98.03
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.01
KOG2025|consensus	892		98.0
PF05004	309	IFRD: Interferon-related developmental regulator (	97.95
PF05004	309	IFRD: Interferon-related developmental regulator (	97.93
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.92
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.89
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.86
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.67
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.64
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.64
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.6
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.56
KOG1517|consensus	1387		97.52
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.52
KOG1525|consensus	1266		97.5
KOG1949|consensus	1005		97.45
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.42
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.41
KOG1525|consensus	1266		97.4
KOG1967|consensus	1030		97.38
KOG1949|consensus	1005		97.35
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.34
KOG0414|consensus	1251		97.33
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.28
KOG1517|consensus	1387		97.27
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.22
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.13
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.12
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.05
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.05
KOG1993|consensus	978		97.03
KOG2973|consensus	353		97.01
KOG1822|consensus	2067		96.97
KOG2933|consensus	334		96.95
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.88
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	96.86
KOG1993|consensus	978		96.83
KOG0392|consensus	1549		96.8
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.75
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.74
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.73
KOG2933|consensus	334		96.66
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.64
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.53
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.5
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.43
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	96.34
KOG0392|consensus	1549		96.31
KOG1822|consensus	2067		96.31
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.3
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.25
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.24
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.11
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.08
KOG0891|consensus	2341		95.97
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.95
KOG2213|consensus	460		95.91
KOG2160|consensus	342		95.9
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.79
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.73
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.72
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.71
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.69
KOG2160|consensus	342		95.65
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.61
KOG2021|consensus	980		95.55
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.54
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.47
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.43
KOG0946|consensus	970		95.39
KOG2011|consensus	1048		95.27
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.22
KOG2011|consensus	1048		95.08
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	95.05
KOG0889|consensus	3550		95.02
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	95.01
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.93
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.88
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.88
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.83
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	94.71
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.63
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.51
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.33
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.31
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	94.26
KOG2022|consensus	982		94.26
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.14
KOG2549|consensus	576		94.14
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.12
KOG1222|consensus	791		93.98
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	93.93
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.84
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	93.74
KOG0946|consensus	970		93.73
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.53
KOG2213|consensus	460		93.3
KOG2081|consensus	559		93.27
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.12
KOG2149|consensus	393		93.08
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	92.96
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	92.88
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	92.81
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.6
KOG0803|consensus	1312		92.58
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	92.57
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	92.52
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.51
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.46
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	92.45
KOG2759|consensus	442		92.45
KOG2149|consensus	393		92.38
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.38
KOG2549|consensus	576		92.14
KOG2021|consensus	980		92.13
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.88
KOG1848|consensus	1610		91.72
KOG0803|consensus	1312		91.7
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	91.57
KOG1848|consensus	1610		91.44
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	91.2
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	91.14
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.06
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	91.05
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	91.05
COG5656	970	SXM1 Importin, protein involved in nuclear import	91.02
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	90.88
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.81
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.79
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.11
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.05
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	89.96
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	89.9
KOG2005|consensus	878		89.9
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	89.86
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	89.57
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	89.2
KOG0889|consensus	3550		89.17
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	88.98
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	88.9
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	88.49
KOG2022|consensus	982		88.35
KOG4500|consensus	604		88.28
KOG2973|consensus	353		88.21
KOG1048|consensus	717		87.85
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	87.53
KOG2122|consensus	2195		87.28
cd03561	133	VHS VHS domain family; The VHS domain is present i	86.99
PF05536	543	Neurochondrin: Neurochondrin	86.73
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	86.54
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	86.44
KOG1851|consensus	1710		86.31
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	86.01
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.89
KOG2081|consensus	559		85.76
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	85.65
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	85.46
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	85.1
KOG4500|consensus	604		85.07
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.91
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	84.9
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	84.88
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	83.73
PF05536	543	Neurochondrin: Neurochondrin	82.87
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	82.25
KOG0891|consensus	2341		82.16
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.36
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	80.92
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	80.55
KOG2122|consensus	2195		80.54

>KOG0211|consensus

Probab=100.00  E-value=1.4e-51  Score=421.25  Aligned_cols=587  Identities=57%  Similarity=0.827  Sum_probs=541.6

Q ss_pred             CCCCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCC
Q psy14014          5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG   84 (615)
Q Consensus         5 ~~~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~   84 (615)
                      +...+++.++|+.++....+.|...|..+++.++.++...|.+.++.+++|++.+.+.+.++|...++..+|.+....++
T Consensus        74 ~~~~~~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~  153 (759)
T KOG0211|consen   74 DDPNEDSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGG  153 (759)
T ss_pred             cCccccccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccc
Confidence            44445579999999999999999999999999999999999999999999999998866668999999999999999999


Q ss_pred             cchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCC-hh
Q psy14014         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT-AG  163 (615)
Q Consensus        85 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~  163 (615)
                      +++.+.+++.+..++.+++..||+.+++.+..++...+++....++.|++.++..++|...|.+++++++..+..+. +.
T Consensus       154 ~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~  233 (759)
T KOG0211|consen  154 PEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDA  233 (759)
T ss_pred             hhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHH
Confidence            99999999999999999999999999999999999999998899999999999999999999999999999999998 67


Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-hH
Q psy14014        164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-DV  242 (615)
Q Consensus       164 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~  242 (615)
                      ++.++.+.+.++++|.++.||..+++.++.+++.++.+.....++|.+..+..|+.+.||.+|+..+..+...+..+ ..
T Consensus       234 vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~  313 (759)
T KOG0211|consen  234 VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDV  313 (759)
T ss_pred             HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhh
Confidence            88999999999999999999999999999999999999899999999999999999999999999999999999987 77


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      ...+.+.+.+..+|++|++|+.+++.+..+...+|.+....+..+.+...++|+..++|.+++.....+...+..+....
T Consensus       314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~  393 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN  393 (759)
T ss_pred             hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence            78899999999999999999999999999999999977777889999999999999999999999999998877544444


Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh---hhhch
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN---EVIGI  399 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~---~~~~~  399 (615)
                      ...+.++|.+..+..|.+..||.+.+..+..+...+|.+.....+.|.+...++|+.+.||...+..+..+.   ...|.
T Consensus       394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~  473 (759)
T KOG0211|consen  394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI  473 (759)
T ss_pred             cchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc
Confidence            556778999999999999999999999999999999998888999999999999999999999996554433   33333


Q ss_pred             hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCc
Q psy14014        400 QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDH  479 (615)
Q Consensus       400 ~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  479 (615)
                      ....+..     +                  |.+.++..+.+|++|.++++.++.++...|..++.+.+-+.+..++.|.
T Consensus       474 ~~~s~sl-----L------------------p~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~  530 (759)
T KOG0211|consen  474 STVSNSL-----L------------------PAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDH  530 (759)
T ss_pred             hhhhhhh-----h------------------hhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhh
Confidence            3322222     2                  6777888888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCc
Q psy14014        480 VYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVA  559 (615)
Q Consensus       480 ~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~  559 (615)
                      .+.+|++|...+..++..+|.+|....++|.++.+..++++.+|++.+.++..+++.+|.+.+.+.++|.+..+..|+++
T Consensus       531 v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~va  610 (759)
T KOG0211|consen  531 VYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVA  610 (759)
T ss_pred             HHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCch
Confidence            99999999999999999999888888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhhc
Q psy14014        560 NVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       560 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      +||.++++.|..+.+....+.....+.|++..|..|+|.+||++|..|++.++.+
T Consensus       611 nVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~  665 (759)
T KOG0211|consen  611 NVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS  665 (759)
T ss_pred             hhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence            9999999999999999988888999999999999999999999999999988753

>KOG0211|consensus

Probab=100.00  E-value=2e-31  Score=273.58  Aligned_cols=533  Identities=23%  Similarity=0.310  Sum_probs=458.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhchH
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLP   93 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~   93 (615)
                      |-++-+.+ .+...++..+...++.+....|...+..-++|-+-.+..++. .||..++..+-+++.....+.....+.|
T Consensus       123 ipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~  201 (759)
T KOG0211|consen  123 IPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVP  201 (759)
T ss_pred             hhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            34444555 666668888888888887777766577777777777766666 4999999999988876655555678899


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh-hhHHHHHHHH
Q psy14014         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHF  172 (615)
Q Consensus        94 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-~~~~~l~~~l  172 (615)
                      ++..+..++.-.-|..++..+.......+++.++..+.|...++++|+...+|..++.-++.+...+.. .....+++.+
T Consensus       202 l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~  281 (759)
T KOG0211|consen  202 LLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTL  281 (759)
T ss_pred             HHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHH
Confidence            999998886667788888888888888888888999999999999999999999999999988888754 4566788999


Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchh-hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR  251 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  251 (615)
                      ..+..|....||..+...+..+...+..+ ...+.+.+.+.+..+|.++.+|......+..+.+.++++.......+...
T Consensus       282 ~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  361 (759)
T KOG0211|consen  282 IQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVS  361 (759)
T ss_pred             hhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHH
Confidence            99999999999999999999999988776 77788999999999999999999999999999999998777777899999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhC----ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHh
Q psy14014        252 QCSGDTSWRVRYMVADKFTDLQKAVG----PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY  327 (615)
Q Consensus       252 ~~~~d~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  327 (615)
                      ..++|+.|.+|.+.+.-...+.....    .+...+.++|.+..+..|.+..||.+.+.........++++.    ....
T Consensus       362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~----ti~~  437 (759)
T KOG0211|consen  362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER----TISE  437 (759)
T ss_pred             HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc----Cccc
Confidence            99999999999999999999988877    444556788999999999999999988888877766666543    3567


Q ss_pred             hHHHHHHhhCCCCHHHHHHHHHHH---HhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014        328 ILPYVKDLVADPNQHVKSALASVI---MGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV  404 (615)
Q Consensus       328 l~p~l~~~~~d~~~~vR~~~~~~l---~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  404 (615)
                      +.|.+...++|..+.||....+.+   ..+-.+.|.....+.++|.+..+..|.                      .|+.
T Consensus       438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~----------------------~wRv  495 (759)
T KOG0211|consen  438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL----------------------LWRV  495 (759)
T ss_pred             cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch----------------------hHHH
Confidence            889999999999999999998544   444455677777788888888777663                      4666


Q ss_pred             HHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHH
Q psy14014        405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIR  484 (615)
Q Consensus       405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR  484 (615)
                      +.++++++|.++.+.|..||++.+. +.+..++.|..+.+|.++...+..++..+|.+|....++|.++....++++-+|
T Consensus       496 r~ail~~ip~la~q~~~~~~~~~~~-~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R  574 (759)
T KOG0211|consen  496 RLAILEYIPQLALQLGVEFFDEKLA-ELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVR  574 (759)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhHHHH-HHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchh
Confidence            6667778888888889889888877 688899999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHH
Q psy14014        485 EAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFN  564 (615)
Q Consensus       485 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~  564 (615)
                      .+.+.++..++..+|.+.+.+.++|.+.++..|+.+++|.++++.+..+......+...+.+.|.+..+..|.+.+||+.
T Consensus       575 ~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~  654 (759)
T KOG0211|consen  575 MTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYR  654 (759)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHH
Confidence            99999999999999999998999999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHHHHHHhHh
Q psy14014        565 VAKTLQKIGPI  575 (615)
Q Consensus       565 a~~~l~~l~~~  575 (615)
                      |..+++.+...
T Consensus       655 a~~a~~~i~l~  665 (759)
T KOG0211|consen  655 AILAFGSIELS  665 (759)
T ss_pred             HHHHHHHHHHH
Confidence            99999887643

>KOG2023|consensus

Probab=100.00  E-value=1.2e-30  Score=251.84  Aligned_cols=600  Identities=19%  Similarity=0.197  Sum_probs=424.1

Q ss_pred             CCCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHH----------------------------------hCcchhhc
Q psy14014          6 SAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALA----------------------------------LGQERTRG   51 (615)
Q Consensus         6 ~~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~----------------------------------~~~~~~~~   51 (615)
                      -+-++-+..|..+++.-.|+|+.+|..+...+...-..                                  .+.....+
T Consensus         6 ~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~   85 (885)
T KOG2023|consen    6 QPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPS   85 (885)
T ss_pred             cccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCCh
Confidence            34455566788888888899999998888877766320                                  00001222


Q ss_pred             cchhhhhh----hcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--
Q psy14014         52 ELIPFLTE----TIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--  124 (615)
Q Consensus        52 ~ll~~l~~----~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--  124 (615)
                      +.+.+++.    .+.|+++ +|..+...+.+++.. ++-.+|+.++|.|.+++..++.+..+.|..+|.++++.....  
T Consensus        86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld  164 (885)
T KOG2023|consen   86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD  164 (885)
T ss_pred             HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence            33333322    3445555 666666666665542 235678999999999999999999999999999999876431  


Q ss_pred             -----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHH
Q psy14014        125 -----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMVRRAAAGKLGELAK  196 (615)
Q Consensus       125 -----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  196 (615)
                           .-.+.++|.+.++..+++..+|..|..+++.+...-+...   ...+++.+..+..|++++||+.+|.++..+.+
T Consensus       165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle  244 (885)
T KOG2023|consen  165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE  244 (885)
T ss_pred             hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence                 1234589999999999999999999999998876665543   45677778888899999999999999999988


Q ss_pred             Hhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHh----------cC-----
Q psy14014        197 VVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS----DVEQLVMPTLRQC----------SG-----  255 (615)
Q Consensus       197 ~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~----------~~-----  255 (615)
                      ..++.  .....++.++.+..+|.+.+|.-.|.+.+..+++.--..    .+.+.++|.+.+.          ++     
T Consensus       245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD  324 (885)
T KOG2023|consen  245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED  324 (885)
T ss_pred             hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence            76553  345678888899999999999999999999998865332    2344566666421          11     


Q ss_pred             -------------------------------C----------CChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc
Q psy14014        256 -------------------------------D----------TSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK  294 (615)
Q Consensus       256 -------------------------------d----------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  294 (615)
                                                     |          .+|..|+..+.++.-++..+|.+. .+.++|.+...+.
T Consensus       325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~  403 (885)
T KOG2023|consen  325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLS  403 (885)
T ss_pred             ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcC
Confidence                                           0          139999999999999999998774 5788999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHH---H
Q psy14014        295 DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL---F  371 (615)
Q Consensus       295 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~---l  371 (615)
                      ++++.||++++-++|.+++.+-....  .+++.++|++..+++|..+-||...|++|++.+..+-.+.-.+++.|.   +
T Consensus       404 ~~~W~vrEagvLAlGAIAEGcM~g~~--p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l  481 (885)
T KOG2023|consen  404 SEEWKVREAGVLALGAIAEGCMQGFV--PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL  481 (885)
T ss_pred             cchhhhhhhhHHHHHHHHHHHhhhcc--cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence            99999999999999999986543332  457889999999999999999999999999999876554333344444   4


Q ss_pred             HHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHH--------------------HHHhhhhhhhhccc----cchhhhh
Q psy14014        372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--------------------AIIEYMPLLAGQLG----VEFFDEK  427 (615)
Q Consensus       372 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--------------------~i~~~l~~l~~~~~----~~~~~~~  427 (615)
                      ...+-|.+..|+++|++++..+-+..+++-.. .+                    -..+.+..++...|    ...|.+.
T Consensus       482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp-~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi  560 (885)
T KOG2023|consen  482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVP-YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI  560 (885)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            44556889999999999999887766543111 11                    11233444444443    2344555


Q ss_pred             hhhHHHHHhh--hcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhc-----------CC-----cchHHHHHH
Q psy14014        428 LNALSIVELA--EDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWL-----------VD-----HVYAIREAA  487 (615)
Q Consensus       428 l~~~~i~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-----------~d-----~~~~vR~~a  487 (615)
                      +..|.+.++-  +|++. --.-.++++..+++++|..|  |.+.+...++..+           +|     ++...-..+
T Consensus       561 LmPPLi~KW~~lsd~DK-dLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~s  639 (885)
T KOG2023|consen  561 LMPPLIEKWELLSDSDK-DLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVS  639 (885)
T ss_pred             hccHHHHHHHhcCcccc-hHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEe
Confidence            6656666653  34332 23457889999999887654  1222222222221           11     233344578


Q ss_pred             HHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchH
Q psy14014        488 TLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANV  561 (615)
Q Consensus       488 ~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~v  561 (615)
                      +..+.-+++.+|...    ....+...++..+.|+.+.||+++...+|.+.+.|.+..  ....++|.+-.-++-..-.|
T Consensus       640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv  719 (885)
T KOG2023|consen  640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISV  719 (885)
T ss_pred             HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchH
Confidence            888999999887642    234578888999999999999999999999999885433  23456666665555556679


Q ss_pred             HHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---c--CCCCccHHHHHHHHHHHHh
Q psy14014        562 RFNVAKTLQKIGPILETNVIQSQVKPALDKL---N--GDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       562 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~--~d~d~~v~~~a~~a~~~~~  612 (615)
                      -.+|+++++.++-.++.+.. +.+.+++..|   .  ...+..+-++..-.+|.++
T Consensus       720 ~nNA~WAiGeia~k~g~~~~-~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg  774 (885)
T KOG2023|consen  720 CNNAIWAIGEIALKMGLKMK-QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLG  774 (885)
T ss_pred             HHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh
Confidence            99999999999988875432 6667777666   1  2334455555555555443

>KOG2171|consensus

Probab=100.00  E-value=3.5e-27  Score=243.77  Aligned_cols=596  Identities=15%  Similarity=0.151  Sum_probs=412.9

Q ss_pred             HHHHHhcCcc-HHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCC--cchhhhch
Q psy14014         17 VLIDELKNED-VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLL   92 (615)
Q Consensus        17 ~ll~~l~s~d-~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~   92 (615)
                      .+|..++++. +.+|.+.++.++++++...++ .|+++++++.+..++.++ .|..+...|..+.+..+.  ..|...+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            4556666654 559999999999999999999 999999999999999886 999999999888876654  45788999


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcC-hhHHh---hhHHHHHHH----hhcCCCcchhhhHHhhhhhhccCCChh-
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHS-PHDLE---AHFVPLVQR----LASGDWFTSRTSACGLFSVCYPRVTAG-  163 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~---~~~l~~l~~----l~~~~~~~~r~~a~~~l~~~~~~~~~~-  163 (615)
                      ++|.+.++|++..||-.|+.++..++..++ +....   ..++|-+..    ...+++...-..+...+..+....++- 
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            999999999888899999999999999996 22222   235554333    333444433455566666665555543 


Q ss_pred             --hHHHHHHHHHHHhCC--CChHHHHHHHHhHHHHHHHhch-----hhhHhhhHHHHHHhhccC----------------
Q psy14014        164 --VKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEV-----DYLKTDIIPMFVNLAQDE----------------  218 (615)
Q Consensus       164 --~~~~l~~~l~~l~~d--~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~ll~~l~~~~~d~----------------  218 (615)
                        ....++......+.+  -+..+|..+++.+..+++..+.     ....+.+++.+.....|.                
T Consensus       242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence              344555666666554  5788999999999999988543     224556777766665321                


Q ss_pred             chhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCC
Q psy14014        219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDS  296 (615)
Q Consensus       219 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~  296 (615)
                      ...-...|.+++..++..+|++...+.+++.+...+..++|+-|.++..+++.++...++.+  ..+++++..+..++|+
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP  401 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence            12256788999999999999999999999999999999999999999999999998776554  2468899999999999


Q ss_pred             cHHHHHHHHHHHHHHHhhccccchh------------------------------------------HHHHHhhHH-HHH
Q psy14014        297 EAEVRAAAANKVRDFCQNLDAYNQE------------------------------------------NIIMTYILP-YVK  333 (615)
Q Consensus       297 ~~~vr~~a~~~l~~~~~~~~~~~~~------------------------------------------~~~~~~l~p-~l~  333 (615)
                      +|.||.+|+.+++++...+.++..+                                          ..+++.++. .+.
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~  481 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL  481 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887665221                                          112233333 333


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCC----hhHHHHHHHhhhHhhhhhchhHHHHHH-
Q psy14014        334 DLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDEC----PEVRLNIISNLDCVNEVIGIQQWRVRL-  406 (615)
Q Consensus       334 ~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~-  406 (615)
                      .+.+...+.||..++.+|++++...+.  ..+.+.++|.+.+++...+    ..+|...+++++.+...+|.+.+.+.. 
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~  561 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE  561 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence            456788899999999999999987775  3457788999999887533    357778888888877777765443321 


Q ss_pred             H----------------------HHhhhhhhhhccccchhh--hhhhhHHHHHh--------------------------
Q psy14014        407 A----------------------IIEYMPLLAGQLGVEFFD--EKLNALSIVEL--------------------------  436 (615)
Q Consensus       407 ~----------------------i~~~l~~l~~~~~~~~~~--~~l~~~~i~~~--------------------------  436 (615)
                      .                      .+.++..++..+|.+|-+  ..+.-|.+...                          
T Consensus       562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~  641 (1075)
T KOG2171|consen  562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV  641 (1075)
T ss_pred             HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence            0                      111222334444544411  11110111110                          


Q ss_pred             -hhcC-CchH-------HHHHHHHhHHHHhhhChHh--HHHHHHH-HHHHhcCCcchHHHHHHHHHHHHHHHHh------
Q psy14014        437 -AEDS-KWRV-------RLAIIEYMPLLAGQLGVEF--FDEKLNA-LCMTWLVDHVYAIREAATLNLKKLVEQF------  498 (615)
Q Consensus       437 -~~~~-~~~v-------r~~~~~~l~~l~~~~~~~~--~~~~l~~-~l~~~l~d~~~~vR~~a~~~l~~l~~~~------  498 (615)
                       ..+. ...+       +..++..++.++...+..|  |....++ .+..+...-...||.+|+.++..+++..      
T Consensus       642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~  721 (1075)
T KOG2171|consen  642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQG  721 (1075)
T ss_pred             ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence             0011 1222       4567888888887766543  3344444 3333444567789999999999887642      


Q ss_pred             ChHHh---hhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhCh-----------------------------------
Q psy14014        499 GSEWA---QSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGP-----------------------------------  539 (615)
Q Consensus       499 ~~~~~---~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~-----------------------------------  539 (615)
                      ++...   -..+.|.+.+.+.+ +...+-.....+++...+.+|.                                   
T Consensus       722 ~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~e  801 (1075)
T KOG2171|consen  722 GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDE  801 (1075)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            22211   12355555544333 3444444455555555443221                                   


Q ss_pred             -----------------------------------hh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--hh
Q psy14014        540 -----------------------------------TV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NV  580 (615)
Q Consensus       540 -----------------------------------~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~~  580 (615)
                                                         ++  +-..+.|.+.+++..+.+.-|..+.-+++.+++..++  ..
T Consensus       802 ed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~  881 (1075)
T KOG2171|consen  802 EDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAK  881 (1075)
T ss_pred             hhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccch
Confidence                                               11  1245677777777777777799999999998888764  35


Q ss_pred             HHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        581 IQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       581 ~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      +.+.+.|.+-.+..|.+++||++|.+.++++++
T Consensus       882 ~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq  914 (1075)
T KOG2171|consen  882 YKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQ  914 (1075)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            567788888888999999999999999999986

>KOG2171|consensus

Probab=99.97  E-value=6.7e-27  Score=241.71  Aligned_cols=552  Identities=16%  Similarity=0.206  Sum_probs=408.5

Q ss_pred             chHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCC-cH-HHHHHHHHHhccccC----CCCCcc
Q psy14014         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-ED-EVLLALAEQLGTFTP----NVGGPE   86 (615)
Q Consensus        13 ~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~-~~-~vr~~a~~~l~~l~~----~~~~~~   86 (615)
                      .++..++..+.|+|..+|..|-+.+..++.   .+    .++|.|...+.. ++ ++|..++..+.++..    .+. .+
T Consensus         4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~---~~----~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e   75 (1075)
T KOG2171|consen    4 APLEQLLQQLLSPDNEVRRQAEEALETLAK---TE----PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AE   75 (1075)
T ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHHhhc---cc----chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HH
Confidence            467789999999999999999999998864   22    388888776553 44 499888866666543    222 22


Q ss_pred             hhhhchH-HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh--
Q psy14014         87 YVHCLLP-PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--  163 (615)
Q Consensus        87 ~~~~l~~-~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  163 (615)
                      ..+.+.. +|......+.+.||.+-++++..+++..-++ -++.+++++....++++...|.+|..++..+...++..  
T Consensus        76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~  154 (1075)
T KOG2171|consen   76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence            2223322 4555667889999999999999999998777 78899999999999999999999999998888777654  


Q ss_pred             -hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hh--hHhhhHH----HHHHhhccCchhHHHHHHHHHHHHH
Q psy14014        164 -VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DY--LKTDIIP----MFVNLAQDEQDSVRLLAVEACVSIA  234 (615)
Q Consensus       164 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~--~~~~ll~----~l~~~~~d~~~~vr~~a~~~l~~l~  234 (615)
                       ....+.+.|.+.++|++..||-.++++++.++...+.  ..  ....++|    .+...+++++...-..+++++..++
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~  234 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL  234 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence             4458889999999998888999999999999998852  11  1223444    4445566777778888999999998


Q ss_pred             hhcCh--hhHHHhHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhCcc-----chhhhHHHHHHHhhcCC---------
Q psy14014        235 SLLSQ--SDVEQLVMPTLRQCSGDT--SWRVRYMVADKFTDLQKAVGPE-----ITKTDLVQAFQMLLKDS---------  296 (615)
Q Consensus       235 ~~~~~--~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~---------  296 (615)
                      +..++  ......++....+...+.  +..+|..+++.+..+++..+..     .....+++.+..++.|.         
T Consensus       235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            88776  233444566666666554  5779999999988887762211     12345677776665321         


Q ss_pred             -------cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhh
Q psy14014        297 -------EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHL  367 (615)
Q Consensus       297 -------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l  367 (615)
                             +..-...|.++++.++..+++.    .+.+.+++++..++++++|+-|.+++.+|+.+++..++  ....+++
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~I  390 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKI  390 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                   1124567899999999998876    46788999999999999999999999999999987664  3346789


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHH
Q psy14014        368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRL  446 (615)
Q Consensus       368 ~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~  446 (615)
                      +|.+++.++|+++.||.+|+.+++++...+.+.--....   +.+|                 |.+...+.+ .+.+|..
T Consensus       391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~---e~l~-----------------~aL~~~ld~~~~~rV~a  450 (1075)
T KOG2171|consen  391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH---ERLP-----------------PALIALLDSTQNVRVQA  450 (1075)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH---Hhcc-----------------HHHHHHhcccCchHHHH
Confidence            999999999999999999999999987766543211111   1121                 455555555 4778998


Q ss_pred             HHHHHhHHHHhhhChHh---HHHHHHH-HHHHhcCCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCC--
Q psy14014        447 AIIEYMPLLAGQLGVEF---FDEKLNA-LCMTWLVDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQ--  518 (615)
Q Consensus       447 ~~~~~l~~l~~~~~~~~---~~~~l~~-~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--  518 (615)
                      .++.++-.+.....++.   |.+.++. .+.-+++.+...||+.++.+++.++...+..+  +.+.++|.|.+.+...  
T Consensus       451 hAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~  530 (1075)
T KOG2171|consen  451 HAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADD  530 (1075)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCc
Confidence            88888888876665543   4455665 33445567788999999999999999887764  4467899998876544  


Q ss_pred             --CchHHHHHHHHHHHHHhhhChhhHHH---hhHHHHHhh---CCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHH
Q psy14014        519 --NYLHRMTCLFCINVLAEACGPTVTAN---FLLPTVLNM---AGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKP  587 (615)
Q Consensus       519 --~~~~R~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~~---~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~  587 (615)
                        ....|-.+..|++-++...|.+.|.+   .++..+..+   ..|.+...|......++++++.++++   +....+.|
T Consensus       531 ~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmpp  610 (1075)
T KOG2171|consen  531 KDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPP  610 (1075)
T ss_pred             hhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHH
Confidence              45678888999999999999877754   456666665   45677788999999999999998854   33344555


Q ss_pred             HHhhhcCCCC
Q psy14014        588 ALDKLNGDTD  597 (615)
Q Consensus       588 ~l~~l~~d~d  597 (615)
                      +++....+++
T Consensus       611 l~~ta~~~p~  620 (1075)
T KOG2171|consen  611 LLKTARLDPD  620 (1075)
T ss_pred             HHHhhccCCc
Confidence            5555544433

>KOG0213|consensus

Probab=99.97  E-value=7.2e-26  Score=221.29  Aligned_cols=560  Identities=16%  Similarity=0.190  Sum_probs=407.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCC--cchhhh
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGG--PEYVHC   90 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~--~~~~~~   90 (615)
                      |..+-..+.|.|..+|....+.++.++.++|-+    +++|||...+.+..  .-|+..+++..+++...|.  -.|+..
T Consensus       478 istmrpDidn~deYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~  553 (1172)
T KOG0213|consen  478 ISTMRPDIDNKDEYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKP  553 (1172)
T ss_pred             HHhhcCCcccccHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHH
Confidence            344445677899999999999999999999866    89999999988753  4677777666666654443  567888


Q ss_pred             chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHh---hhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh----
Q psy14014         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG----  163 (615)
Q Consensus        91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----  163 (615)
                      ++.++..++.|++..||..++.++..+++...+-.++   ..+-|+.......... .-.+-.+.++.+++...+.    
T Consensus       554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~y  632 (1172)
T KOG0213|consen  554 LVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASY  632 (1172)
T ss_pred             HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHH
Confidence            9999999999999999999999999999998875443   3455655444332110 1112235667777766543    


Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHh---------------------------
Q psy14014        164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNL---------------------------  214 (615)
Q Consensus       164 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~---------------------------  214 (615)
                      ...+++-.+.+-.+.++.++++.++..+...|...+-  .....+++|.|...                           
T Consensus       633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv  712 (1172)
T KOG0213|consen  633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV  712 (1172)
T ss_pred             hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh
Confidence            3456667777777889999999999988888765443  23334455544332                           


Q ss_pred             ------------hccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc
Q psy14014        215 ------------AQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP  278 (615)
Q Consensus       215 ------------~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~  278 (615)
                                  ++|+.+..|+...++...+...+|...+    ...++.-++..+........ .....|+.+...+|.
T Consensus       713 G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~  791 (1172)
T KOG0213|consen  713 GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGG  791 (1172)
T ss_pred             CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhh
Confidence                        2455666777777777776666664322    22334444433333222222 334567777777765


Q ss_pred             --cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014        279 --EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       279 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~  356 (615)
                        +.....++...+..++++.+.||+.|+..++.++..+.. +.++..+..+-..|.+.+....+.|-.+++.++..+..
T Consensus       792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~n  870 (1172)
T KOG0213|consen  792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVN  870 (1172)
T ss_pred             ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-ccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence              344568888899999999999999999999888876532 22224455566677888999999999999999999999


Q ss_pred             hhcchhh---hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh----hchhHHHHHHHHHhhhhhhhhccccchhhhhhh
Q psy14014        357 ILGKHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV----IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLN  429 (615)
Q Consensus       357 ~~g~~~~---~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~  429 (615)
                      +.|-...   ...++|.+...|++.+..|+.+++..++.++..    ++..+|..-+                       
T Consensus       871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-----------------------  927 (1172)
T KOG0213|consen  871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-----------------------  927 (1172)
T ss_pred             hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-----------------------
Confidence            8886433   457899999999999999999999999888643    3445554322                       


Q ss_pred             hHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhH
Q psy14014        430 ALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIP  509 (615)
Q Consensus       430 ~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  509 (615)
                       -.+.++++..+-.+|.++.+.++.|++..|+..    ++..+++.|.-.....|.+...+++.+++.+|+=    .++|
T Consensus       928 -feLlelLkahkK~iRRaa~nTfG~IakaIGPqd----VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLP  998 (1172)
T KOG0213|consen  928 -FELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLP  998 (1172)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH----HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhH
Confidence             134566666777899999999999999999964    6667788888888899999999999999998862    6899


Q ss_pred             HHHhhhcCCCchHHHHHHHHHHHHHhhhCh--hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHH
Q psy14014        510 KVVAMSRDQNYLHRMTCLFCINVLAEACGP--TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP  587 (615)
Q Consensus       510 ~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  587 (615)
                      .|.+-+..++.+|....++++..+.+..|.  ..+...+.|.|...+.|.|..-|+.++.++..+.-......-.+.+..
T Consensus       999 almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iH 1078 (1172)
T KOG0213|consen  999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIH 1078 (1172)
T ss_pred             HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHH
Confidence            999999999999999999999999998876  335567999999999999999999999999998744321111222333


Q ss_pred             HHhhh---cCCCCccHHHHHHHHHHHHhh
Q psy14014        588 ALDKL---NGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       588 ~l~~l---~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ++.-+   .-+.-+.|.+.-.++++.+.-
T Consensus      1079 LLN~iWpNIle~sPhviqa~~e~~eg~r~ 1107 (1172)
T KOG0213|consen 1079 LLNLIWPNILETSPHVIQAFDEAMEGLRV 1107 (1172)
T ss_pred             HHHHhhhhhcCCChHHHHHHHHHHHHHHH
Confidence            33333   356777888777777766543

>KOG2023|consensus

Probab=99.96  E-value=4.6e-26  Score=220.45  Aligned_cols=589  Identities=17%  Similarity=0.194  Sum_probs=412.1

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCC---C----cchh
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVG---G----PEYV   88 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~---~----~~~~   88 (615)
                      ..+..+.+.++-+|......+..++...|-. .|++++|.|.++++.++ .....+..+|.++.+-..   +    ....
T Consensus        94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~-~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl  172 (885)
T KOG2023|consen   94 ECLHGLGDASPLIRATVGIVITTIASTGGLQ-HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL  172 (885)
T ss_pred             HHHhhccCchHHHHhhhhheeeeeecccccc-cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch
Confidence            3456677778888888887777777655555 78999999999998877 477777777777765211   1    2456


Q ss_pred             hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH--hhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh--
Q psy14014         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL--EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV--  164 (615)
Q Consensus        89 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~--  164 (615)
                      ..++|-+.++..++.+.+|..|+.++..+.-.-+....  ...++..+..+++|++..+|+..+..+..+.+...+..  
T Consensus       173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p  252 (885)
T KOG2023|consen  173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP  252 (885)
T ss_pred             HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence            77899999999999999999999999887665554322  23477778889999999999999988888777665543  


Q ss_pred             -HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh-ch---hhhHhhhHHHHHHh----------hc-------------
Q psy14014        165 -KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV-EV---DYLKTDIIPMFVNL----------AQ-------------  216 (615)
Q Consensus       165 -~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~-~~---~~~~~~ll~~l~~~----------~~-------------  216 (615)
                       ...+++++++..+|.+.+|.-.||+....++..- .+   ..+..+++|++.+-          ++             
T Consensus       253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDree  332 (885)
T KOG2023|consen  253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREE  332 (885)
T ss_pred             chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhh
Confidence             4668889999999999999999999999988642 11   23455677776552          22             


Q ss_pred             -----------------------c----------CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHH
Q psy14014        217 -----------------------D----------EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRY  263 (615)
Q Consensus       217 -----------------------d----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~  263 (615)
                                             |          .+|..|+.+..++..++..++.+ ..+.++|.+.+.+..+.|.+|+
T Consensus       333 DIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrE  411 (885)
T KOG2023|consen  333 DIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVRE  411 (885)
T ss_pred             hccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhh
Confidence                                   0          12789999999999999888876 5888999999999999999999


Q ss_pred             HHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCH
Q psy14014        264 MVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQ  341 (615)
Q Consensus       264 ~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~  341 (615)
                      +.+-++|.+++..-.-+  ..++++|.++.++.|+.+-||.-.+..|.++..+...+.+. .+...++.-+.+.+-|.+.
T Consensus       412 agvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK  490 (885)
T KOG2023|consen  412 AGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNK  490 (885)
T ss_pred             hhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccH
Confidence            99999999998653332  34579999999999999999999999999999987666543 3444455555666778999


Q ss_pred             HHHHHHHHHHHhhchhhcchh--hhhhhHHHHHHhh---cCCChhHHHHHHHhhhHhhh-hhchh------------HHH
Q psy14014        342 HVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQL---KDECPEVRLNIISNLDCVNE-VIGIQ------------QWR  403 (615)
Q Consensus       342 ~vR~~~~~~l~~l~~~~g~~~--~~~~l~p~l~~~l---~d~~~~vr~~a~~~l~~l~~-~~~~~------------~~~  403 (615)
                      +|+.++|.++..+-+-.|.+.  +.++++..+...+   +.+|--+...|+.+|..-+. .....            .|.
T Consensus       491 ~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~  570 (885)
T KOG2023|consen  491 KVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWE  570 (885)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHH
Confidence            999999999998887766532  2223333333222   33455566667666654331 11111            222


Q ss_pred             H------HH-HHHhhhhhhhhccccchhh-------hhhh--hHHHHHhh---hcC-----CchHHHHHHHHhHHHHhhh
Q psy14014        404 V------RL-AIIEYMPLLAGQLGVEFFD-------EKLN--ALSIVELA---EDS-----KWRVRLAIIEYMPLLAGQL  459 (615)
Q Consensus       404 ~------~~-~i~~~l~~l~~~~~~~~~~-------~~l~--~~~i~~~~---~~~-----~~~vr~~~~~~l~~l~~~~  459 (615)
                      .      .+ -..+++..++..+|..|.+       ..+.  ........   .++     +-..--.+++.+.-+++.+
T Consensus       571 ~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL  650 (885)
T KOG2023|consen  571 LLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL  650 (885)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh
Confidence            1      00 1234455556677765532       1110  00111111   111     1111224677777788877


Q ss_pred             ChHh----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCCchHHHHHHHHHHHH
Q psy14014        460 GVEF----FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQNYLHRMTCLFCINVL  533 (615)
Q Consensus       460 ~~~~----~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l  533 (615)
                      |...    +.+.+..++.+.+.|+.++||..+...+|.+.+.+.+..  ....++|.+..-+.-.+-.+-.+|++++|.+
T Consensus       651 g~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGei  730 (885)
T KOG2023|consen  651 GSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEI  730 (885)
T ss_pred             hhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHH
Confidence            7643    346788999999999999999999999999999874321  1233555555444555667889999999999


Q ss_pred             HhhhChhhHHHhhHHHHHhhC-----CCCCchHHHHHHHHHHHHhHhhh---hhhHHhhHHHHHhhhcCCCCccHHHHHH
Q psy14014        534 AEACGPTVTANFLLPTVLNMA-----GDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKLNGDTDVDVKYFAQ  605 (615)
Q Consensus       534 ~~~~~~~~~~~~i~~~l~~~~-----~D~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~d~d~~v~~~a~  605 (615)
                      +...|.+. .+++.|.+..+.     ......+-.+.+-+++++.-..+   ++.....+.|-+..+.+=.|.+-++.|.
T Consensus       731 a~k~g~~~-~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAF  809 (885)
T KOG2023|consen  731 ALKMGLKM-KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAF  809 (885)
T ss_pred             HHHhchhh-hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHH
Confidence            99988764 244445544442     23445788888999998876654   3455666788888787666777777776


Q ss_pred             HHHH
Q psy14014        606 EAIS  609 (615)
Q Consensus       606 ~a~~  609 (615)
                      -++=
T Consensus       810 rG~c  813 (885)
T KOG2023|consen  810 RGLC  813 (885)
T ss_pred             HHHH
Confidence            6553

>KOG0213|consensus

Probab=99.96  E-value=1.3e-25  Score=219.59  Aligned_cols=557  Identities=19%  Similarity=0.269  Sum_probs=363.0

Q ss_pred             chHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhh-hcCCcH-H-HHHHHHHHhccccCCCCCcchhh
Q psy14014         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDED-E-VLLALAEQLGTFTPNVGGPEYVH   89 (615)
Q Consensus        13 ~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-~~~~~~-~-vr~~a~~~l~~l~~~~~~~~~~~   89 (615)
                      ..|..+|-.+++..+..|..+++.|..-+..+|.....++++|++.. .++|+. . +-+.+-..|-++....  -.|++
T Consensus       363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVh  440 (1172)
T KOG0213|consen  363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVH  440 (1172)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhcee
Confidence            46899999999999999999999999999999999899999999876 467766 3 4444444554444321  12333


Q ss_pred             hchHHHhhhhcC-----------------------------------chhHHHHHHHHHHHHHHhhcChhHHhhhHHHHH
Q psy14014         90 CLLPPLESLATV-----------------------------------EETVVRDKAVESLRLISAQHSPHDLEAHFVPLV  134 (615)
Q Consensus        90 ~l~~~l~~l~~~-----------------------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l  134 (615)
                      .++-.+..++-|                                   .++.||.....++..+++.++-    +.++|++
T Consensus       441 kILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfL  516 (1172)
T KOG0213|consen  441 KILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFL  516 (1172)
T ss_pred             eeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHH
Confidence            333333333333                                   3455666666666666555543    3577888


Q ss_pred             HHhhcCC-CcchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhh
Q psy14014        135 QRLASGD-WFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDI  207 (615)
Q Consensus       135 ~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l  207 (615)
                      ...+++. ++..|..++++...++...+-..   ...++..+..++.|....||-.++.++..+++..++   +.+..-+
T Consensus       517 kavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVl  596 (1172)
T KOG0213|consen  517 KAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVL  596 (1172)
T ss_pred             HHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            8888875 77788888887777766665443   344556667778888888888888888888888765   2111111


Q ss_pred             HHHHHHh-----------------------------------------hccCchhHHHHHHHHHHHHHhhcChhh--HHH
Q psy14014        208 IPMFVNL-----------------------------------------AQDEQDSVRLLAVEACVSIASLLSQSD--VEQ  244 (615)
Q Consensus       208 l~~l~~~-----------------------------------------~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~  244 (615)
                      -|+....                                         ...++++.++..+..+..++..-|-+.  +..
T Consensus       597 kpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~  676 (1172)
T KOG0213|consen  597 KPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRF  676 (1172)
T ss_pred             HHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhh
Confidence            1111111                                         112233344444444444443333210  011


Q ss_pred             hHHHHHHHhcCCCChHHHHHHH---------HHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014        245 LVMPTLRQCSGDTSWRVRYMVA---------DKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       245 ~l~~~l~~~~~d~~~~vR~~~~---------~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  315 (615)
                      .++|.+...     +..|+.+.         .+-..++..+|.    ..++.-...-++|+.+.-|...+.....+...+
T Consensus       677 dilp~ff~~-----fw~rrmA~drr~ykqlv~ttv~ia~KvG~----~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l  747 (1172)
T KOG0213|consen  677 DILPEFFFS-----FWGRRMALDRRNYKQLVDTTVEIAAKVGS----DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL  747 (1172)
T ss_pred             hhhHHHHhh-----hhhhhhhccccchhhHHHHHHHHHHHhCc----hHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc
Confidence            111111100     00111111         111122222221    122222222334444444444444444444433


Q ss_pred             cccch----------------------------------------hHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy14014        316 DAYNQ----------------------------------------ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS  355 (615)
Q Consensus       316 ~~~~~----------------------------------------~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~  355 (615)
                      +....                                        .+.+++.+...+...++++++.||+.++..++.++
T Consensus       748 g~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la  827 (1172)
T KOG0213|consen  748 GAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLA  827 (1172)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            32110                                        01234555555667789999999999999999888


Q ss_pred             hhh---cchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHH
Q psy14014        356 PIL---GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALS  432 (615)
Q Consensus       356 ~~~---g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~  432 (615)
                      .++   |.+....++--.+.+.+..+.++|.-..+.++.++....|...+...  |-+.+                  |.
T Consensus       828 ~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP--i~dll------------------Pr  887 (1172)
T KOG0213|consen  828 KVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP--IKDLL------------------PR  887 (1172)
T ss_pred             HHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC--hhhhc------------------cc
Confidence            765   34455556666677888888999998888888888877765433211  11223                  55


Q ss_pred             HHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHH---HhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhH
Q psy14014        433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM---TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIP  509 (615)
Q Consensus       433 i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  509 (615)
                      +.-.+++...+|....+..++.|+..-....-....+.+++   .+|...+.++|.+|..++|-+++.+|+.    .++.
T Consensus       888 ltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLa  963 (1172)
T KOG0213|consen  888 LTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLA  963 (1172)
T ss_pred             chHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHH
Confidence            66667788888999999999999875433222233444444   4567788999999999999999999975    6889


Q ss_pred             HHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh--hhhHHhhHHH
Q psy14014        510 KVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE--TNVIQSQVKP  587 (615)
Q Consensus       510 ~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~  587 (615)
                      +|++.++..+...|..+.-+++.+++.|++=    .++|.|.+=..-+..+|+..+.++++.+++..+  ...+...+.|
T Consensus       964 tLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~P 1039 (1172)
T KOG0213|consen  964 TLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTP 1039 (1172)
T ss_pred             HHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhH
Confidence            9999999999999999999999999999863    378888877788999999999999999999887  3566788999


Q ss_pred             HHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        588 ALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       588 ~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                      ++...+.|.|...|+-|..+++-++
T Consensus      1040 lleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1040 LLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHHh
Confidence            9999999999999999999988665

>KOG1241|consensus

Probab=99.95  E-value=3.7e-23  Score=203.90  Aligned_cols=578  Identities=14%  Similarity=0.119  Sum_probs=416.6

Q ss_pred             HHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-H-HHHHHHHHhccccCCCCCc---chhhhch
Q psy14014         18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGP---EYVHCLL   92 (615)
Q Consensus        18 ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~-vr~~a~~~l~~l~~~~~~~---~~~~~l~   92 (615)
                      .+..|.++.|..+..|.+.++.++..--|...|+++++.+.....++. . ++....+.+|.+.+.+..+   +..+.++
T Consensus        95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL  174 (859)
T KOG1241|consen   95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL  174 (859)
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence            346688888888999999999998876677799999999988776655 3 8999999999998866432   2334455


Q ss_pred             HHHhhhh--cCchhHHHHHHHHHHHHHHhhc----ChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhh----ccCCCh
Q psy14014         93 PPLESLA--TVEETVVRDKAVESLRLISAQH----SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC----YPRVTA  162 (615)
Q Consensus        93 ~~l~~l~--~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~  162 (615)
                      ..+.+..  ..++..||.+|..+|.+-.+..    ..+.-+++++..++..-..++.++|.+|..++..+    |.++..
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~  254 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP  254 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555443  2346789999999998865543    33445667888888877778888998888877765    445566


Q ss_pred             hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh---------------ch------hhhHhhhHHHHHHhhc-----
Q psy14014        163 GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---------------EV------DYLKTDIIPMFVNLAQ-----  216 (615)
Q Consensus       163 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~---------------~~------~~~~~~ll~~l~~~~~-----  216 (615)
                      ++.+.++..........+++|.-.+++....+|.--               ++      ....+.++|.+.+++.     
T Consensus       255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~  334 (859)
T KOG1241|consen  255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED  334 (859)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence            677777777778788889999999999988777521               10      0123478898888774     


Q ss_pred             --cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHHHHHH
Q psy14014        217 --DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQAFQM  291 (615)
Q Consensus       217 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~  291 (615)
                        |++|.+.++|-.||.-++...+++. .+.++|.+.+-++.|+|+-|.+++.+||.+...-....   ...+.+|.++.
T Consensus       335 ~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~  413 (859)
T KOG1241|consen  335 DDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN  413 (859)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence              3468899999999999998888764 66899999999999999999999999999876433221   23578889999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-------hhh-
Q psy14014        292 LLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-------HNT-  363 (615)
Q Consensus       292 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-------~~~-  363 (615)
                      ++.|+.-.||..+..+++.++..++.......+....++.+.+-++| .|+|-..+++++..+++....       ... 
T Consensus       414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~  492 (859)
T KOG1241|consen  414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA  492 (859)
T ss_pred             HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            99999999999999999999999886555556677778888877776 688889999999988865321       111 


Q ss_pred             hhhhHHHHHHhhc-----C-CChhHHHHHHHhhhHhhhhhchhHHHHHH-------------------------------
Q psy14014        364 VDHLLPLFLSQLK-----D-ECPEVRLNIISNLDCVNEVIGIQQWRVRL-------------------------------  406 (615)
Q Consensus       364 ~~~l~p~l~~~l~-----d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-------------------------------  406 (615)
                      .+...+.+..+++     | ...+.|..|.++|.++++....+......                               
T Consensus       493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ  572 (859)
T KOG1241|consen  493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQ  572 (859)
T ss_pred             chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence            1222333333332     2 24579999999999887665432111000                               


Q ss_pred             -HHHhhhhhhhhccccch--hhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhc-CCc
Q psy14014        407 -AIIEYMPLLAGQLGVEF--FDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWL-VDH  479 (615)
Q Consensus       407 -~i~~~l~~l~~~~~~~~--~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~  479 (615)
                       .+..++..+.++.+.++  ..+.+. ..+.+.++. ++..+.+.+.-+++.++..+|+.|  +.+.+.|++...| +-.
T Consensus       573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM-~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~  651 (859)
T KOG1241|consen  573 SLLCNTLQSIIRKVGSDIREVSDQIM-GLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ  651 (859)
T ss_pred             HHHHHHHHHHHHHccccchhHHHHHH-HHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence             01112223333333322  122222 244555555 455678889999999999999977  5588999998888 667


Q ss_pred             chHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhh
Q psy14014        480 VYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNM  553 (615)
Q Consensus       480 ~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~  553 (615)
                      .+.|..+|+...|.+++.++.++  +.+.+...|.+.+.++  ...++-..+.++|.|+-.+|.++  +.+.++|.+...
T Consensus       652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a  731 (859)
T KOG1241|consen  652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA  731 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            88999999999999999998874  3466888888888776  44567788899999998888765  457788888775


Q ss_pred             C---CCC--------CchHHHHHHHHHHHHhHhhhh-------hhHHhhHHHHHhhhcCCCCc
Q psy14014        554 A---GDN--------VANVRFNVAKTLQKIGPILET-------NVIQSQVKPALDKLNGDTDV  598 (615)
Q Consensus       554 ~---~D~--------~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~~~l~~l~~d~d~  598 (615)
                      .   .|+        ...+|.++..+...++..+++       ..+.+.+...+.+...|+|-
T Consensus       732 s~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~  794 (859)
T KOG1241|consen  732 SSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDV  794 (859)
T ss_pred             HhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCccc
Confidence            4   333        236999999999999887763       12344455555555555543

>KOG1241|consensus

Probab=99.94  E-value=4.1e-23  Score=203.58  Aligned_cols=550  Identities=15%  Similarity=0.169  Sum_probs=384.7

Q ss_pred             hhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhH-HHHHHHHHHHHHHhhcChhHH
Q psy14014         49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV-VRDKAVESLRLISAQHSPHDL  126 (615)
Q Consensus        49 ~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~-vr~~a~~~l~~l~~~~~~~~~  126 (615)
                      .++++-..+...+....+ ....|+++++.++..--....|+.+++.+..-..++++. +|++++++++.+++.+.++.+
T Consensus        87 ~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl  166 (859)
T KOG1241|consen   87 IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL  166 (859)
T ss_pred             HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH
Confidence            344444444444443333 555666666666543223457899999988888887776 999999999999999999866


Q ss_pred             hhh---HHHHHHH-hhcC-CCcchhhhHHhhhhhhccC----C-ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHH
Q psy14014        127 EAH---FVPLVQR-LASG-DWFTSRTSACGLFSVCYPR----V-TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK  196 (615)
Q Consensus       127 ~~~---~l~~l~~-l~~~-~~~~~r~~a~~~l~~~~~~----~-~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  196 (615)
                      +..   ++-.+.. +... ++..+|.+|...+-.....    + .+..++.++.......+.++.++|.++..+|..+..
T Consensus       167 ~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~  246 (859)
T KOG1241|consen  167 EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMS  246 (859)
T ss_pred             HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence            554   3333332 2222 4678998888665433222    2 344567788888888889999999999999998876


Q ss_pred             Hhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhh-c--------------Chh------hHHHhHHHHHHH
Q psy14014        197 VVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL-L--------------SQS------DVEQLVMPTLRQ  252 (615)
Q Consensus       197 ~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~--------------~~~------~~~~~l~~~l~~  252 (615)
                      ..-.   ....+.++++-....++++++|...+++.|.++++- +              ++.      .-.+.++|.+.+
T Consensus       247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~  326 (859)
T KOG1241|consen  247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE  326 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence            4322   223445777778888899999999999999977653 1              110      112367888877


Q ss_pred             hcC-------CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        253 CSG-------DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       253 ~~~-------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      ++.       |.+|..-+++.-||.-++...|++. .++++|.+.+-++.+++.-|.+|+.+++.+...-.+ .+...+.
T Consensus       327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~-~~Lt~iV  404 (859)
T KOG1241|consen  327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP-DKLTPIV  404 (859)
T ss_pred             HHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch-hhhhHHH
Confidence            652       3569999999999999999998875 459999999999999999999999999998874322 2234578


Q ss_pred             HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc----chhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH
Q psy14014        326 TYILPYVKDLVADPNQHVKSALASVIMGLSPILG----KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ  401 (615)
Q Consensus       326 ~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g----~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  401 (615)
                      +..+|.+.+++.|++-.||.+++++++++++.+.    .+...+.+++.+.+.++| ++.|-.+++.++..+++..... 
T Consensus       405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA-  482 (859)
T KOG1241|consen  405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEA-  482 (859)
T ss_pred             hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHh-
Confidence            8899999999999999999999999999988754    344455667777788887 6889999999888776544211 


Q ss_pred             HHHHHHHHhhhhhh-hhccccchhhhhhhhHHHHHhhh--c-CCchHHHHHHHHhHHHHhhhChHhHH--HHHHHHHHH-
Q psy14014        402 WRVRLAIIEYMPLL-AGQLGVEFFDEKLNALSIVELAE--D-SKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNALCMT-  474 (615)
Q Consensus       402 ~~~~~~i~~~l~~l-~~~~~~~~~~~~l~~~~i~~~~~--~-~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~-  474 (615)
                                .+.= .+..--.||..++.  .+.+..+  | ...+.|.++.++|..+.+....+.+.  ..+.+.++. 
T Consensus       483 ----------~~s~~qt~~~t~~y~~ii~--~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~k  550 (859)
T KOG1241|consen  483 ----------AVSNGQTDPATPFYEAIIG--SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEK  550 (859)
T ss_pred             ----------ccCCCCCCccchhHHHHHH--HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence                      1000 00000134544332  2332221  2 45679999999999999877665422  122222222 


Q ss_pred             ---hcC---------CcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhCh
Q psy14014        475 ---WLV---------DHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGP  539 (615)
Q Consensus       475 ---~l~---------d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~  539 (615)
                         .++         +...++...-..+|+.+.+.++++.  ..+.++..++++++. ++..+...+..+++.+++.+|+
T Consensus       551 l~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~  630 (859)
T KOG1241|consen  551 LDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGK  630 (859)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhH
Confidence               111         1234455666677888888887743  235577888888877 5667788899999999999998


Q ss_pred             hh--HHHhhHHHHHhhC-CCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcC-CCCccHHHHHHHHHHHHh
Q psy14014        540 TV--TANFLLPTVLNMA-GDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNG-DTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       540 ~~--~~~~i~~~l~~~~-~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~-d~d~~v~~~a~~a~~~~~  612 (615)
                      .+  +.+.+.|.|...+ +-.+..|-..+....+.++..++++   +-...+..++++|.+ --+.+||-.....+++||
T Consensus       631 ~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA  710 (859)
T KOG1241|consen  631 GFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA  710 (859)
T ss_pred             hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence            76  3578899999877 6778889889999999998887653   334445556666643 338899999999999988


Q ss_pred             hc
Q psy14014        613 DS  614 (615)
Q Consensus       613 ~~  614 (615)
                      ..
T Consensus       711 la  712 (859)
T KOG1241|consen  711 LA  712 (859)
T ss_pred             HH
Confidence            64

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.94  E-value=8.6e-23  Score=196.19  Aligned_cols=550  Identities=15%  Similarity=0.123  Sum_probs=387.8

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc--HHHHHHHHHHhccccCCCCC--cchhhhch
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--DEVLLALAEQLGTFTPNVGG--PEYVHCLL   92 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~vr~~a~~~l~~l~~~~~~--~~~~~~l~   92 (615)
                      .+-..+.|.|+.+|....+..+..+.++|-+    +++||+..++.+.  .+-|+..+++..+++..+|.  -.|+..++
T Consensus       285 ~mrpDi~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~  360 (975)
T COG5181         285 SMRPDITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLL  360 (975)
T ss_pred             eccCCcccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHH
Confidence            3345678999999999999999999999876    8999999988764  35677666666666655443  46778889


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHh---hhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh----hH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG----VK  165 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~  165 (615)
                      .++..++.|+...||.-++.++..+++...+-.++   ..+.|+.......... .-.+-.+..+.+.+.++++    ..
T Consensus       361 ~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~t  439 (975)
T COG5181         361 KCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDT  439 (975)
T ss_pred             HHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhH
Confidence            99999999999999999999999999998874443   3455655444332110 1111224445555555433    34


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc--hhhhHhhhHHHHHHhhccCchhHHHHHH---------HHHHHHH
Q psy14014        166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAV---------EACVSIA  234 (615)
Q Consensus       166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~~~d~~~~vr~~a~---------~~l~~l~  234 (615)
                      .+.+..+...+..++.+.++..........+.-+  +.....++.|.|.+-.     +.|+.|.         .+-..++
T Consensus       440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f-----w~rr~A~dr~~~k~v~~ttvilA  514 (975)
T COG5181         440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF-----WRRRSAGDRRSYKQVVLTTVILA  514 (975)
T ss_pred             HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH-----HHhhhcccccccceeehhHHHHH
Confidence            5677777788888888877766554443333221  2223344555444321     2222222         3334445


Q ss_pred             hhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc------------------------------------
Q psy14014        235 SLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP------------------------------------  278 (615)
Q Consensus       235 ~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~------------------------------------  278 (615)
                      +..++..    +..-+.+..+|+....|...+.+...+...+|.                                    
T Consensus       515 k~~g~~~----v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv  590 (975)
T COG5181         515 KMGGDPR----VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTV  590 (975)
T ss_pred             HHcCChH----HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccce
Confidence            4444432    334444455666666666666555444433321                                    


Q ss_pred             --------cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHH
Q psy14014        279 --------EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASV  350 (615)
Q Consensus       279 --------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~  350 (615)
                              +.....++...++.++++.|.||+.|+...+.+...+..- .+...+..+-..|.+.+....+.|-..++++
T Consensus       591 ~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c-~e~~~l~klg~iLyE~lge~ypEvLgsil~A  669 (975)
T COG5181         591 LVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC-GETKELAKLGNILYENLGEDYPEVLGSILKA  669 (975)
T ss_pred             eeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc-chHHHHHHHhHHHHHhcCcccHHHHHHHHHH
Confidence                    0112456777888999999999999999888877655321 1113455566677788889999999999999


Q ss_pred             HHhhchhhcch---hhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh----hchhHHHHHHHHHhhhhhhhhccccch
Q psy14014        351 IMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV----IGIQQWRVRLAIIEYMPLLAGQLGVEF  423 (615)
Q Consensus       351 l~~l~~~~g~~---~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~i~~~l~~l~~~~~~~~  423 (615)
                      +..+..+.+-.   .-...++|.+...|++.+..|....+..++.++..    ++..+|..-.                 
T Consensus       670 i~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc-----------------  732 (975)
T COG5181         670 ICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC-----------------  732 (975)
T ss_pred             HHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH-----------------
Confidence            99888776543   23457899999999999999999999888877643    3445554322                 


Q ss_pred             hhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh
Q psy14014        424 FDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA  503 (615)
Q Consensus       424 ~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~  503 (615)
                             -.+.+.+.+.+-.+|..|.+.++.+++..|++.    ++..+++.|.-.....|.+...+++.+++.+|+-  
T Consensus       733 -------feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd----vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf--  799 (975)
T COG5181         733 -------FELVDSLKSWNKEIRRNATETFGCISRAIGPQD----VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF--  799 (975)
T ss_pred             -------HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH----HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch--
Confidence                   134566677778899999999999999999964    6667788888888999999999999999999863  


Q ss_pred             hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhH
Q psy14014        504 QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI  581 (615)
Q Consensus       504 ~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~  581 (615)
                        .++|.+..-+..++.++....++++..+.+..|...  +...+.|.+...+.|.|+.-|+.++..+..+.-.++...-
T Consensus       800 --sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~  877 (975)
T COG5181         800 --SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD  877 (975)
T ss_pred             --hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence              689999999999999999999999999999987643  4567999999999999999999999999999765443222


Q ss_pred             HhhHHHHHhhh---cCCCCccHHHHHHHHHHHHhh
Q psy14014        582 QSQVKPALDKL---NGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       582 ~~~~~~~l~~l---~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+....++.-|   .-|+-+.|...-.+.++.++.
T Consensus       878 eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~  912 (975)
T COG5181         878 EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT  912 (975)
T ss_pred             HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence            33344444444   468888888888888777664

>KOG1824|consensus

Probab=99.93  E-value=3.8e-22  Score=200.57  Aligned_cols=572  Identities=15%  Similarity=0.208  Sum_probs=370.0

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHH----HHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhc
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIA----LALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCL   91 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~----~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l   91 (615)
                      .++++|.|.|.+.|++|...|..--    ..+..+ ....++..+.++++|.+ +|+..|.+|+|.++..++. .++..+
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~d-Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke-~~le~~   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDD-SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE-DQLETI   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhcccc-chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH-HHHHHH
Confidence            7899999999999999998887653    234334 55677888888899988 6999999999998876643 334444


Q ss_pred             hHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-------hHHhhhHHHHHHHh---------------------------
Q psy14014         92 LPPLESLATVEETVVRDKAVESLRLISAQHSP-------HDLEAHFVPLVQRL---------------------------  137 (615)
Q Consensus        92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~l~~l~~l---------------------------  137 (615)
                      ..-|..-.-......|..+.-+|..+...+++       ..+-..++|.+...                           
T Consensus        87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~  166 (1233)
T KOG1824|consen   87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT  166 (1233)
T ss_pred             HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence            44333322233455555555555555555543       01111122222211                           


Q ss_pred             ----------------hcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHh-CCCChHHHHHHHHhHHHHHHHhch
Q psy14014        138 ----------------ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEV  200 (615)
Q Consensus       138 ----------------~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~  200 (615)
                                      ...+...+|+.++..++.+....+...-.++...+.+.+ +......-+.-+++++.++...|.
T Consensus       167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~  246 (1233)
T KOG1824|consen  167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH  246 (1233)
T ss_pred             cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence                            112223456666666666666666555555554444433 333344444556677777776665


Q ss_pred             h--hhHhhhHHHHHHhh---ccCchhHHHHHHHHHHHHHhhcChhh--HHHhHHHHHHHh--------------------
Q psy14014        201 D--YLKTDIIPMFVNLA---QDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQC--------------------  253 (615)
Q Consensus       201 ~--~~~~~ll~~l~~~~---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~--------------------  253 (615)
                      +  ...+.+.|.+..++   +.++++.|+.++++++.+....+.+.  +.+.++..+.+.                    
T Consensus       247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~  326 (1233)
T KOG1824|consen  247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL  326 (1233)
T ss_pred             hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence            3  24567899999998   67789999999999999999888652  233333333211                    


Q ss_pred             ------------c--CCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        254 ------------S--GDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       254 ------------~--~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                                  .  +|-+|.||+++++++..+...-.+..  ....+-|.++..+++.+..|+...+.++-.+....++
T Consensus       327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP  406 (1233)
T ss_pred             hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence                        1  13369999999999988765322111  2345678888889999999999999988888776543


Q ss_pred             cch---------------hHHHH----HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhc
Q psy14014        318 YNQ---------------ENIIM----TYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLK  376 (615)
Q Consensus       318 ~~~---------------~~~~~----~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~  376 (615)
                      ...               ...++    ..++..+.+.+.+.+.+.|..+...+..+..++..  ....+.++|.+.-.+.
T Consensus       407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~  486 (1233)
T KOG1824|consen  407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN  486 (1233)
T ss_pred             CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence            210               00222    23344444556666667788877777777665432  3345568899998898


Q ss_pred             CCC--hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHH
Q psy14014        377 DEC--PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPL  454 (615)
Q Consensus       377 d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~  454 (615)
                      |.+  ...+..++..+..+....+.+.+...      ++.+.              |.+.....++.+++-..++.....
T Consensus       487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~------~~~Ls--------------~~v~~aV~d~fyKisaEAL~v~~~  546 (1233)
T KOG1824|consen  487 DKSSSSNLKIDALVFLYSALISHPPEVFHPH------LSALS--------------PPVVAAVGDPFYKISAEALLVCQQ  546 (1233)
T ss_pred             CccchHHHHHHHHHHHHHHHhcCChhhcccc------hhhhh--------------hHHHHHhcCchHhhhHHHHHHHHH
Confidence            864  35566666665554444444433322      22221              556666778888888888888888


Q ss_pred             HHhhhC---------hHhHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC--CCch
Q psy14014        455 LAGQLG---------VEFFDEKLNALCMTWL--VDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD--QNYL  521 (615)
Q Consensus       455 l~~~~~---------~~~~~~~l~~~l~~~l--~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~  521 (615)
                      +++.+.         ...+...+....++.+  +|.+.+||++|+.++|.++..||+ +. ..-+|..+..+-+  .|..
T Consensus       547 lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l-~~eL~~~L~il~eRl~nEi  624 (1233)
T KOG1824|consen  547 LVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FL-GNELPRTLPILLERLGNEI  624 (1233)
T ss_pred             HHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hh-hhhhHHHHHHHHHHHhchh
Confidence            877542         2223344555445543  688899999999999999999994 22 2334444433322  4667


Q ss_pred             HHHHHHHHHHHHHhh---hChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcCC
Q psy14014        522 HRMTCLFCINVLAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNGD  595 (615)
Q Consensus       522 ~R~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d  595 (615)
                      +|..|++|+..++..   ++.......++|.+...+.-.....|.....++..+.+.++..   +..+.+..-+..|..+
T Consensus       625 TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise  704 (1233)
T KOG1824|consen  625 TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE  704 (1233)
T ss_pred             HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence            899999999999864   2333456778888888888778889999999999998887643   3334444444456799


Q ss_pred             CCccHHHHHHHHHHHHh
Q psy14014        596 TDVDVKYFAQEAISSIA  612 (615)
Q Consensus       596 ~d~~v~~~a~~a~~~~~  612 (615)
                      .|..|.+.|...+...+
T Consensus       705 sdlhvt~~a~~~L~tl~  721 (1233)
T KOG1824|consen  705 SDLHVTQLAVAFLTTLA  721 (1233)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998877654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.92  E-value=6.5e-22  Score=190.23  Aligned_cols=559  Identities=18%  Similarity=0.249  Sum_probs=360.1

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhh-hcCCcH-H-HHHHHHHHhccccCCCCCcchhhh
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDED-E-VLLALAEQLGTFTPNVGGPEYVHC   90 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-~~~~~~-~-vr~~a~~~l~~l~~~~~~~~~~~~   90 (615)
                      .+..++-..++..+..|..+++.|..-+..+|++...+.++|.+.. .++|+. . +.+.+-..|..+....  -.|.+.
T Consensus       169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~--~pyvhk  246 (975)
T COG5181         169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLK--VPYVHK  246 (975)
T ss_pred             hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccc--ccceee
Confidence            5778888999999999999999999999999999999999999865 467766 3 4555555555444321  122232


Q ss_pred             chHHHhhhh-----------------------------------cCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHH
Q psy14014         91 LLPPLESLA-----------------------------------TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQ  135 (615)
Q Consensus        91 l~~~l~~l~-----------------------------------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~  135 (615)
                      ++-....++                                   .+.++.||.....+.+.++..++-    +.++|++.
T Consensus       247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~  322 (975)
T COG5181         247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLE  322 (975)
T ss_pred             EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHH
Confidence            222222222                                   344566777666666666666654    35778888


Q ss_pred             HhhcCC-CcchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhH
Q psy14014        136 RLASGD-WFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDII  208 (615)
Q Consensus       136 ~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll  208 (615)
                      .++++. ++..|..++++...++..++-..   ...++.-+..++.|.+..||-.++.++..+++..++   +.+..-+-
T Consensus       323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~  402 (975)
T COG5181         323 ALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLC  402 (975)
T ss_pred             HHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHH
Confidence            888875 77778788877777776665443   344555566777888888888888888888887765   22221111


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHhhc----------------------ChhhHHHhHHHHHHHh---cCCCChHHHH
Q psy14014        209 PMFVNLAQDEQDSVRLLAVEACVSIASLL----------------------SQSDVEQLVMPTLRQC---SGDTSWRVRY  263 (615)
Q Consensus       209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----------------------~~~~~~~~l~~~l~~~---~~d~~~~vR~  263 (615)
                      |.....-++...+ -..-+.+.+.+....                      +++...+.++-....+   -.+.-|..|.
T Consensus       403 pLw~g~~~hrgk~-l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~  481 (975)
T COG5181         403 PLWEGASQHRGKE-LVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRD  481 (975)
T ss_pred             HHHHHHHhcCCch-HHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHH
Confidence            2111111111111 011111111111111                      1111122222111111   1233344443


Q ss_pred             HHHH-HHH----------------------HHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccch
Q psy14014        264 MVAD-KFT----------------------DLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ  320 (615)
Q Consensus       264 ~~~~-~l~----------------------~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  320 (615)
                      ...- .|.                      .+++..|    ...+..-+...++|+...-|..++.....+...++....
T Consensus       482 ~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g----~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~  557 (975)
T COG5181         482 QVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG----DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGF  557 (975)
T ss_pred             hhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC----ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccc
Confidence            3221 111                      1122212    234555566667777666677666666666555442110


Q ss_pred             ----------------------------------------hHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhh--
Q psy14014        321 ----------------------------------------ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPIL--  358 (615)
Q Consensus       321 ----------------------------------------~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~--  358 (615)
                                                              .+.++..++..+.++++++.+.||..++...+.++.++  
T Consensus       558 dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~  637 (975)
T COG5181         558 DERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKA  637 (975)
T ss_pred             cHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence                                                    11234445555566788888889988888888877664  


Q ss_pred             -cchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh
Q psy14014        359 -GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA  437 (615)
Q Consensus       359 -g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~  437 (615)
                       |......++--.+.+.+....++|.-..+.+++++....+-..+++.  |-+.+                  |.+.-.+
T Consensus       638 c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP--i~~il------------------P~ltPIL  697 (975)
T COG5181         638 CGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP--ISGIL------------------PSLTPIL  697 (975)
T ss_pred             cchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc--hhhcc------------------ccccHhh
Confidence             33444445555666777777888888888888777655543322211  11123                  5566667


Q ss_pred             hcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHH---HHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhh
Q psy14014        438 EDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALC---MTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAM  514 (615)
Q Consensus       438 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  514 (615)
                      +++..++....+..++.++..-....-....+.++   .+.|...+.++|.+|..++|-+++.+|+.    .++..|++.
T Consensus       698 rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~Llnn  773 (975)
T COG5181         698 RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNN  773 (975)
T ss_pred             hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhc
Confidence            77888888888888998887543321112334444   44567789999999999999999999975    688899999


Q ss_pred             hcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--hhHHhhHHHHHhhh
Q psy14014        515 SRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVIQSQVKPALDKL  592 (615)
Q Consensus       515 ~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l  592 (615)
                      ++..+...|..+.-+++.+++.+|+=    .++|.+..=..-+..+|+..+.+++..+.+..+.  ..+...+.|++...
T Consensus       774 LkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDA  849 (975)
T COG5181         774 LKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDA  849 (975)
T ss_pred             chHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            99999999999999999999999863    3688888777789999999999999999998874  45677899999999


Q ss_pred             cCCCCccHHHHHHHHHHHH
Q psy14014        593 NGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       593 ~~d~d~~v~~~a~~a~~~~  611 (615)
                      ++|.|+..|+-|...+.-+
T Consensus       850 ltDrD~vhRqta~nvI~Hl  868 (975)
T COG5181         850 LTDRDPVHRQTAMNVIRHL  868 (975)
T ss_pred             hcccchHHHHHHHHHHHHH
Confidence            9999999999998877654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.90  E-value=2.5e-19  Score=200.62  Aligned_cols=575  Identities=13%  Similarity=0.099  Sum_probs=387.1

Q ss_pred             CCcchHHHHHHHhcCc--cHHHHHHHHhcHHHHHHHhCcch--h--hccchhhhhhhcCCcH-HHHHHHHHHhccccCCC
Q psy14014         10 DSLYPIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQER--T--RGELIPFLTETIYDED-EVLLALAEQLGTFTPNV   82 (615)
Q Consensus        10 ~~~~~i~~ll~~l~s~--d~~~R~~a~~~l~~~~~~~~~~~--~--~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~   82 (615)
                      .....+..+++++.+.  ++..|..+...|..+++.-...+  +  ....+|.|..++...+ .+|..++..|..+... 
T Consensus        10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-   88 (2102)
T PLN03200         10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-   88 (2102)
T ss_pred             chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence            3355799999999987  77888899998888876432211  1  2456788888887655 4888777777777643 


Q ss_pred             CCcchh-----hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh------HHhhhHHHHHHHhhcCCCc---chhhh
Q psy14014         83 GGPEYV-----HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH------DLEAHFVPLVQRLASGDWF---TSRTS  148 (615)
Q Consensus        83 ~~~~~~-----~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~l~~~~~~---~~r~~  148 (615)
                        +++.     ...+|.|..++.+.+...|+.|+.+|..+...-..+      ....-.+|.+..+..+...   ..+..
T Consensus        89 --e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~  166 (2102)
T PLN03200         89 --EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL  166 (2102)
T ss_pred             --HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence              2221     345667777777888999999999999998754211      1224457777777766432   23444


Q ss_pred             HHhhhhhhccCCChh----hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhcc-Cch
Q psy14014        149 ACGLFSVCYPRVTAG----VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQD-EQD  220 (615)
Q Consensus       149 a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d-~~~  220 (615)
                      ++..+..++..-...    .....+|.+..+++++++.++..++.++..++...+.   .......+|.+.+++++ .+.
T Consensus       167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~  246 (2102)
T PLN03200        167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV  246 (2102)
T ss_pred             HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh
Confidence            555666655443321    2334778888999999999999999988888765332   33456789999999975 456


Q ss_pred             hHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCCh---------HHHHHHHHHHHHHHHHhCc----------
Q psy14014        221 SVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSW---------RVRYMVADKFTDLQKAVGP----------  278 (615)
Q Consensus       221 ~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~---------~vR~~~~~~l~~l~~~~~~----------  278 (615)
                      .+|+.|..+|..++..-+..   ......+|.+.+++..++.         ..++.++.+|++++.....          
T Consensus       247 ~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~  326 (2102)
T PLN03200        247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSE  326 (2102)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhc
Confidence            89999999999998753221   1122356777776655443         3477777777776542110          


Q ss_pred             -c-----------------------c------hhhhHHHHHHHhhcCCcHHH-HHHHHHHH-------------------
Q psy14014        279 -E-----------------------I------TKTDLVQAFQMLLKDSEAEV-RAAAANKV-------------------  308 (615)
Q Consensus       279 -~-----------------------~------~~~~l~~~l~~~l~d~~~~v-r~~a~~~l-------------------  308 (615)
                       .                       .      ....+.+.+.+++++.++.+ ++.+..+|                   
T Consensus       327 s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~dai  406 (2102)
T PLN03200        327 SPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAK  406 (2102)
T ss_pred             ccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccch
Confidence             0                       0      00012344555565554432 44444444                   


Q ss_pred             ----------------------HHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hh-h
Q psy14014        309 ----------------------RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HN-T  363 (615)
Q Consensus       309 ----------------------~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~-~  363 (615)
                                            ..++.. +.+..........+|.|.+++.+.+..+|..++..++.++..-..  .. .
T Consensus       407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi  485 (2102)
T PLN03200        407 KVLVGLITMATADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT  485 (2102)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                                  222221 001111112234689999999999999999999999998753211  11 1


Q ss_pred             hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCch
Q psy14014        364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWR  443 (615)
Q Consensus       364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~  443 (615)
                      ....+|.|.++|..++..++..|+.++..+...  .++.+..+.-...+                  |.+.+++++.+++
T Consensus       486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~--~~qir~iV~~aGAI------------------ppLV~LL~sgd~~  545 (2102)
T PLN03200        486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH--SEDIRACVESAGAV------------------PALLWLLKNGGPK  545 (2102)
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCH------------------HHHHHHHhCCCHH
Confidence            235799999999999999999999999988652  22222111001122                  5677888889999


Q ss_pred             HHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH-h-----hhchhHHHHhhhcC
Q psy14014        444 VRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW-A-----QSTVIPKVVAMSRD  517 (615)
Q Consensus       444 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~-----~~~i~~~l~~~~~d  517 (615)
                      .+..++.++..+...-..+     .++.+..++..++..++..++..++.+......+. .     ....+|.|.+++++
T Consensus       546 ~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s  620 (2102)
T PLN03200        546 GQEIAAKTLTKLVRTADAA-----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS  620 (2102)
T ss_pred             HHHHHHHHHHHHHhccchh-----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC
Confidence            9999999999987643322     33556777887888899999999999877543321 1     13478999999999


Q ss_pred             CCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh----hHHhhHHHHHh
Q psy14014        518 QNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQSQVKPALD  590 (615)
Q Consensus       518 ~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~  590 (615)
                      ++..++..|++++.+++..-..   ..+....+|.+..++...+.+++..++++|.++.......    .......+.+.
T Consensus       621 gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~  700 (2102)
T PLN03200        621 SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI  700 (2102)
T ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH
Confidence            9999999999999999853221   2234567888999999999999999999999998533221    12333444466


Q ss_pred             hhcCCCCccHHHHHHHHHHHHhh
Q psy14014        591 KLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       591 ~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+++++|.++++.|..|+..+..
T Consensus       701 ~LL~~~d~~v~e~Al~ALanLl~  723 (2102)
T PLN03200        701 KLAKSSSIEVAEQAVCALANLLS  723 (2102)
T ss_pred             HHHhCCChHHHHHHHHHHHHHHc
Confidence            66688999999999999998864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.90  E-value=1.2e-19  Score=203.18  Aligned_cols=566  Identities=13%  Similarity=0.133  Sum_probs=394.4

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcc---hhhccchhhhhhhcCC-cH-HHHHHHHHHhccccCCCCCcchh
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYD-ED-EVLLALAEQLGTFTPNVGGPEYV   88 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~~-~~-~vr~~a~~~l~~l~~~~~~~~~~   88 (615)
                      .+..++.-++++++..+..|...|..++...+..   -.....+|.+.+++.+ ++ .+|..++-+|+.++..  .+++.
T Consensus       190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~r  267 (2102)
T PLN03200        190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEAK  267 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHHH
Confidence            5677888889999999999988887776543221   1345678888888864 44 5999999999988863  22222


Q ss_pred             h-----hchHHHhhhhcCc---------hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCc-chhhhHHhhh
Q psy14014         89 H-----CLLPPLESLATVE---------ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWF-TSRTSACGLF  153 (615)
Q Consensus        89 ~-----~l~~~l~~l~~~~---------~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~-~~r~~a~~~l  153 (615)
                      .     .-+|.|..++..+         ....++.|+-++.+++...      ..++|.+..+.+++.. ..-..++..+
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gAL  341 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGAL  341 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhH
Confidence            1     1244555544432         2456889999999998765      3577888777665422 2222344555


Q ss_pred             hhhccCCCh---hhH----HHHHHHHHHHhCCCChH-HHHHHHHhHHHHHHHh--chhhhHhhhHHHHHHhhccCchhHH
Q psy14014        154 SVCYPRVTA---GVK----AELRSHFRNLCQDDTPM-VRRAAAGKLGELAKVV--EVDYLKTDIIPMFVNLAQDEQDSVR  223 (615)
Q Consensus       154 ~~~~~~~~~---~~~----~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~--~~~~~~~~ll~~l~~~~~d~~~~vr  223 (615)
                      .++......   ..+    ..+.+.+.++++++++. +...+..+|..+....  ..-....+..+.+..+++..+.+++
T Consensus       342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ  421 (2102)
T PLN03200        342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ  421 (2102)
T ss_pred             HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence            555333321   111    13456788999887666 4777777775532211  1111234677888899998889999


Q ss_pred             HHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCc
Q psy14014        224 LLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSE  297 (615)
Q Consensus       224 ~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~  297 (615)
                      ..++.++..++..-...   ......+|.|.+++.+++..+++.++..++.++..-...   ......+|.|.++++..+
T Consensus       422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~  501 (2102)
T PLN03200        422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS  501 (2102)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence            99999999887653321   112336899999999999999999999999987532111   122468999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhHHH-HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc
Q psy14014        298 AEVRAAAANKVRDFCQNLDAYNQENII-MTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK  376 (615)
Q Consensus       298 ~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~  376 (615)
                      +.+|+.|+.++..++.+  .......+ ....+|.|.+++++.++++|..++++|.++...-..     ..++.+..++.
T Consensus       502 ~~iqeeAawAL~NLa~~--~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~~Lv~LLl  574 (2102)
T PLN03200        502 QKAKEDSATVLWNLCCH--SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATISQLTALLL  574 (2102)
T ss_pred             HHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHHHHHHHhc
Confidence            99999999999998873  22112222 236888999999999999999999999998764222     23466778888


Q ss_pred             CCChhHHHHHHHhhhHhhhhhchhHHHHHHH-HHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHH
Q psy14014        377 DECPEVRLNIISNLDCVNEVIGIQQWRVRLA-IIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLL  455 (615)
Q Consensus       377 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l  455 (615)
                      .+++.++..+++.++.+.......+...... .-..+                  |.+.+++++++.++++.++..+..+
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL------------------~~Lv~LL~sgs~~ikk~Aa~iLsnL  636 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL------------------RTLIQLLSSSKEETQEKAASVLADI  636 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH------------------HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            8888999999998888766544332211100 00011                  6788899999999999999999998


Q ss_pred             HhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHH
Q psy14014        456 AGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLF  528 (615)
Q Consensus       456 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~  528 (615)
                      +..-..   .......+|.+..++.+.+..+|..+..+++.+......+.    .....+|.|.+++++.+..++..++.
T Consensus       637 ~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~  716 (2102)
T PLN03200        637 FSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC  716 (2102)
T ss_pred             hcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence            762211   22345577889999999999999999999999997433221    22348899999999999999999999


Q ss_pred             HHHHHHhhhChh--hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh-------HHhhHHHHHhhhcCCCCcc
Q psy14014        529 CINVLAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV-------IQSQVKPALDKLNGDTDVD  599 (615)
Q Consensus       529 ~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~~l~~l~~d~d~~  599 (615)
                      ++++++......  ......+|.|.+++.+..+.+|.+|+.+|.+++...+.+.       ....+.|++..| +-.|.+
T Consensus       717 ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L-~~~~~~  795 (2102)
T PLN03200        717 ALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLL-NSTDLD  795 (2102)
T ss_pred             HHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHH-hcCCcc
Confidence            999998764322  2345678999999999999999999999999997765221       123356666555 444444


Q ss_pred             HHHH--HHHHHHHHhh
Q psy14014        600 VKYF--AQEAISSIAD  613 (615)
Q Consensus       600 v~~~--a~~a~~~~~~  613 (615)
                      ....  |.+++..++.
T Consensus       796 ~~~~~~al~~l~~l~~  811 (2102)
T PLN03200        796 SSATSEALEALALLAR  811 (2102)
T ss_pred             hhhHHHHHHHHHHHHh
Confidence            4444  8888877765

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.88  E-value=1.1e-18  Score=184.37  Aligned_cols=510  Identities=16%  Similarity=0.152  Sum_probs=351.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhchH
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLP   93 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~   93 (615)
                      +...++..+ .+...|..+++.+-.+. ..|.+  ...+.+-+.+++.+++ +.|+.+--.+..+...  .++...-..+
T Consensus         9 l~~~~~~~~-~~~~~~~~~l~kli~~~-~~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n   82 (526)
T PF01602_consen    9 LAKILNSFK-IDISKKKEALKKLIYLM-MLGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLILIIN   82 (526)
T ss_dssp             HHHHHHCSS-THHHHHHHHHHHHHHHH-HTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHHHHH
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHHH-HcCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHHHHH
Confidence            444444444 36667777777666652 33443  2255555666666555 5777666666555542  2233333455


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHH
Q psy14014         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (615)
Q Consensus        94 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~  173 (615)
                      .+..-+.++++.+|-.|+.+++.+.   .                                       +++.+.+.+.+.
T Consensus        83 ~l~kdl~~~n~~~~~lAL~~l~~i~---~---------------------------------------~~~~~~l~~~v~  120 (526)
T PF01602_consen   83 SLQKDLNSPNPYIRGLALRTLSNIR---T---------------------------------------PEMAEPLIPDVI  120 (526)
T ss_dssp             HHHHHHCSSSHHHHHHHHHHHHHH----S---------------------------------------HHHHHHHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHhhhhhhc---c---------------------------------------cchhhHHHHHHH
Confidence            5666667778888888888777765   1                                       122333445567


Q ss_pred             HHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHHHHHH
Q psy14014        174 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLR  251 (615)
Q Consensus       174 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~  251 (615)
                      +++.|+++.||+.|+.++..+.+..+...... +++.+.++++|+++.|+.+|+.++..+ +.-+..  ...+.+.+.+.
T Consensus       121 ~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~  198 (526)
T PF01602_consen  121 KLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILC  198 (526)
T ss_dssp             HHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhh
Confidence            88889999999999999999998755533233 799999999999999999999999888 222222  34555666677


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014        252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY  331 (615)
Q Consensus       252 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~  331 (615)
                      +.+.++++..+..+++.+..++...........+++.+..++++.++.|+..++..+..+....       .....+++.
T Consensus       199 ~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-------~~~~~~~~~  271 (526)
T PF01602_consen  199 QLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-------ELLQKAINP  271 (526)
T ss_dssp             HHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-------HHHHHHHHH
T ss_pred             hcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-------HHHHhhHHH
Confidence            7778899888888888887665422111101468888888899999999999998888655421       246778889


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhh
Q psy14014        332 VKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY  411 (615)
Q Consensus       332 l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~  411 (615)
                      +..++.++++.+|..++.++..++...... . ......+..+..+++..+|..++..+..++..-   .+..      .
T Consensus       272 L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v-~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~---n~~~------I  340 (526)
T PF01602_consen  272 LIKLLSSSDPNVRYIALDSLSQLAQSNPPA-V-FNQSLILFFLLYDDDPSIRKKALDLLYKLANES---NVKE------I  340 (526)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-H-GTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HH---HHHH------H
T ss_pred             HHHHhhcccchhehhHHHHHHHhhcccchh-h-hhhhhhhheecCCCChhHHHHHHHHHhhccccc---chhh------H
Confidence            999999999999999999999998765221 1 122223333444788999999998887765422   1111      1


Q ss_pred             hhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy14014        412 MPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN  490 (615)
Q Consensus       412 l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~  490 (615)
                      +                  +.+.+.+.+ .+..+|..++..+..++..+...  .+..++.+++++......++..+...
T Consensus       341 l------------------~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~  400 (526)
T PF01602_consen  341 L------------------DELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINV  400 (526)
T ss_dssp             H------------------HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHH
T ss_pred             H------------------HHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHH
Confidence            2                  344455533 36669999999999999877542  34456677777777767778888888


Q ss_pred             HHHHHHHhChHHhhhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHH
Q psy14014        491 LKKLVEQFGSEWAQSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL  569 (615)
Q Consensus       491 l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l  569 (615)
                      +..+......  ....++..+.+.+.+ .++..+..+++++|+.++..+.......++..+.+...+..+.||..+..++
T Consensus       401 i~~ll~~~~~--~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~  478 (526)
T PF01602_consen  401 IRDLLSNNPE--LREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTAL  478 (526)
T ss_dssp             HHHHHHHSTT--THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHhhcChh--hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            8888776432  234567777777665 5778899999999999988765114455666677667777889999999999


Q ss_pred             HHHhHhhhhhhHHhhHHHHHhhhcC--CCCccHHHHHHHHHHHHhhc
Q psy14014        570 QKIGPILETNVIQSQVKPALDKLNG--DTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~~l~~l~~--d~d~~v~~~a~~a~~~~~~~  614 (615)
                      ..+....+.....+.+...+..+.+  +.|.+||+.|.+-+..+..+
T Consensus       479 ~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~~  525 (526)
T PF01602_consen  479 AKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNSK  525 (526)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHccc
Confidence            9999887655556678888888877  88999999999998877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1824|consensus

Probab=99.88  E-value=4e-18  Score=172.00  Aligned_cols=543  Identities=15%  Similarity=0.127  Sum_probs=357.9

Q ss_pred             cCCcH-HHHHHHHHHhcc-ccC---CCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHH
Q psy14014         61 IYDED-EVLLALAEQLGT-FTP---NVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQ  135 (615)
Q Consensus        61 ~~~~~-~vr~~a~~~l~~-l~~---~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~  135 (615)
                      +++++ ..|-+|..-|.+ +-.   .+ +.+-...++..+.++++|.+.+|...|+.+++-+.+..+++.++..+-.+..
T Consensus        14 mtssDKDfRfMAtsDLm~eLqkdsi~L-d~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~   92 (1233)
T KOG1824|consen   14 MTSSDKDFRFMATSDLMTELQKDSIKL-DDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCS   92 (1233)
T ss_pred             ccCCCcchhhhhHHHHHHHHHhhhhhc-cccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh
Confidence            34444 577666544332 111   11 1233456677788888999999999999999999999998888777666666


Q ss_pred             HhhcCCCcchhhhHHhhhh---hhccC----CChhhHHHHHHHHHHHh--CCCChHHHHHHHHhHHHHHHHhch--hhhH
Q psy14014        136 RLASGDWFTSRTSACGLFS---VCYPR----VTAGVKAELRSHFRNLC--QDDTPMVRRAAAGKLGELAKVVEV--DYLK  204 (615)
Q Consensus       136 ~l~~~~~~~~r~~a~~~l~---~~~~~----~~~~~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~--~~~~  204 (615)
                      .+.++.....-.+++.+..   .+.+.    +.....+.+.+.+....  +.+...+|-.+++.++.+...+|.  ..+.
T Consensus        93 ~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh  172 (1233)
T KOG1824|consen   93 NMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFH  172 (1233)
T ss_pred             hhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchH
Confidence            6565554433444444333   33332    23445566666666544  345667898899988888777664  1234


Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--h
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--K  282 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~  282 (615)
                      ..++..+..-+..+...||+.|+.+++.++...+.+.+...+...+..+.+.++...-+..+++++.++...|....  .
T Consensus       173 ~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~  252 (1233)
T KOG1824|consen  173 LSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHL  252 (1233)
T ss_pred             HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhccc
Confidence            45555555556677788999999999999999988765554444445555556666677788999999988876542  4


Q ss_pred             hhHHHHHHHhh---cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh-----------------------
Q psy14014        283 TDLVQAFQMLL---KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV-----------------------  336 (615)
Q Consensus       283 ~~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~-----------------------  336 (615)
                      +.++|.+.+++   +..+.+.|+..+++++.|...++.+..  .+++.++..+.+.+                       
T Consensus       253 ~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~--p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~e  330 (1233)
T KOG1824|consen  253 DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEIL--PHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEE  330 (1233)
T ss_pred             chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhc--ccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccc
Confidence            57899999988   778889999999999999998876533  12233333222211                       


Q ss_pred             -----------CCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch-hHH
Q psy14014        337 -----------ADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI-QQW  402 (615)
Q Consensus       337 -----------~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~  402 (615)
                                 .|.+|.||+++++++..+......  ..+.+.+-|.++..++++.++|+...+.++-.+....+. ..|
T Consensus       331 Dde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~  410 (1233)
T KOG1824|consen  331 DDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEV  410 (1233)
T ss_pred             cchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccc
Confidence                       234699999999999887654332  345667888999999999999999999887766554321 011


Q ss_pred             HHHHHHHhhhhhhhhccccc----hhhhhh--hhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--HhHHHHHHHHHHH
Q psy14014        403 RVRLAIIEYMPLLAGQLGVE----FFDEKL--NALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNALCMT  474 (615)
Q Consensus       403 ~~~~~i~~~l~~l~~~~~~~----~~~~~l--~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~  474 (615)
                      ......   +    ...|..    ...+..  ....+.+.++++.-+.|...+..+..+...+..  ....+.++|-+..
T Consensus       411 ~~d~d~---~----e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~  483 (1233)
T KOG1824|consen  411 LADNDA---M----EQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIY  483 (1233)
T ss_pred             ccCchh---h----hccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhh
Confidence            100000   0    001111    011111  002344455666667888888888887765532  2234567888888


Q ss_pred             hcCCcc--hHHHHHHHHHHHHHHHHhChHHhhh---chhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---------h
Q psy14014        475 WLVDHV--YAIREAATLNLKKLVEQFGSEWAQS---TVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---------T  540 (615)
Q Consensus       475 ~l~d~~--~~vR~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---------~  540 (615)
                      .++|.+  ...+..++..+.......+++.+.+   .+.|.+.....|+-|.+-..|+...+.+.+.+-+         +
T Consensus       484 ~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~  563 (1233)
T KOG1824|consen  484 SLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDAS  563 (1233)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCC
Confidence            898864  5788899999888888888876553   3556666678899999999999888888876422         1


Q ss_pred             hHHHhhHHH-HHhh-CCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHhhc
Q psy14014        541 VTANFLLPT-VLNM-AGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       541 ~~~~~i~~~-l~~~-~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      .+...+... +.++ .+|.|.+||..|+.++++++..+++ .....+..++..++ .=.++-.|..|..|+-.++.|
T Consensus       564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S  639 (1233)
T KOG1824|consen  564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRLTAVKALTLIAMS  639 (1233)
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence            122223332 3333 3799999999999999999988873 22233333333331 112456788899999988876

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.88  E-value=2.4e-17  Score=157.90  Aligned_cols=574  Identities=12%  Similarity=0.072  Sum_probs=373.4

Q ss_pred             HHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCCcchh---hhchH
Q psy14014         19 IDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGPEYV---HCLLP   93 (615)
Q Consensus        19 l~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~---~~l~~   93 (615)
                      +..|+|+.|..-..|.+.++.++..--|...|+.+...+.+...++.  .+++.+...+|...+....+...   +.++.
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~  179 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF  179 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence            45688999998889999999998866566688888888887777655  37888888888877644321111   22222


Q ss_pred             HHhhh--hcCchhHHHHHHHHHHHHHHhh----cChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhh----ccCCChh
Q psy14014         94 PLESL--ATVEETVVRDKAVESLRLISAQ----HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC----YPRVTAG  163 (615)
Q Consensus        94 ~l~~l--~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~----~~~~~~~  163 (615)
                      .+...  ...++..||..|+.+|..-+..    +..+.-.+++++..+..-+.++.+....+..++..+    |..++..
T Consensus       180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y  259 (858)
T COG5215         180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY  259 (858)
T ss_pred             HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  2345778999999988873333    333455677888888877777777777777776655    3444556


Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh----------ch---------hhhHhhhHHHHHHhhc-------c
Q psy14014        164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV----------EV---------DYLKTDIIPMFVNLAQ-------D  217 (615)
Q Consensus       164 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~----------~~---------~~~~~~ll~~l~~~~~-------d  217 (615)
                      +.+-+..+..+.+..++.+|.-.+++....+++.-          +.         .....+++|.++.++.       +
T Consensus       260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~  339 (858)
T COG5215         260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG  339 (858)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            66667777788889999999999999998777531          10         0113568888888874       3


Q ss_pred             CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhc
Q psy14014        218 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLK  294 (615)
Q Consensus       218 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~  294 (615)
                      ++|.+..+|..||.-+++..++....+ ++..+.+-+..++|.-|.+++.+||.+...-.+.   ...++.+|.+.....
T Consensus       340 DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~  418 (858)
T COG5215         340 DDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS  418 (858)
T ss_pred             cccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence            478899999999999999888876555 7788888899999999999999999987643222   134578899999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHH---hhCCCCHHHHHHHHHHHHhhchhhcch---------h
Q psy14014        295 DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKD---LVADPNQHVKSALASVIMGLSPILGKH---------N  362 (615)
Q Consensus       295 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~---~~~d~~~~vR~~~~~~l~~l~~~~g~~---------~  362 (615)
                      |+.-.|+..++.+++.+..++........   .+.+....   .+.| .+.+-.++++....++..+.+.         .
T Consensus       419 D~~l~vk~ttAwc~g~iad~va~~i~p~~---Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~  494 (858)
T COG5215         419 DSCLWVKSTTAWCFGAIADHVAMIISPCG---HLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAK  494 (858)
T ss_pred             cceeehhhHHHHHHHHHHHHHHHhcCccc---cccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence            99999999999999999887643221111   12222222   2232 4555556666666665554331         1


Q ss_pred             hhhhhHHHHHHhh--cCCChhHHHHHHHhhhHhhhhhchhHHHHHH----------------------------------
Q psy14014        363 TVDHLLPLFLSQL--KDECPEVRLNIISNLDCVNEVIGIQQWRVRL----------------------------------  406 (615)
Q Consensus       363 ~~~~l~p~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~----------------------------------  406 (615)
                      +...++..+++..  .+.+.+.|..++++|+.++....+.......                                  
T Consensus       495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqS  574 (858)
T COG5215         495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQS  574 (858)
T ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            2223333333322  2445678999999998886554321110000                                  


Q ss_pred             HHHhhhhhhhhccccch--hhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcch
Q psy14014        407 AIIEYMPLLAGQLGVEF--FDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVY  481 (615)
Q Consensus       407 ~i~~~l~~l~~~~~~~~--~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  481 (615)
                      .++.++..+..+.+++.  ..+.+. ..+...++.. ...+-.....+++.+...+|..|  +.+.++|++.+.++..+.
T Consensus       575 N~~~vl~aiir~~~~~ie~v~D~lm-~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~  653 (858)
T COG5215         575 NYIGVLEAIIRTRRRDIEDVEDQLM-ELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDR  653 (858)
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHH-HHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhH
Confidence            01112222223333311  112122 2445555554 33344566777888888887754  668899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhChHHh--hhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCC
Q psy14014        482 AIREAATLNLKKLVEQFGSEWA--QSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAG  555 (615)
Q Consensus       482 ~vR~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~  555 (615)
                      .|-..|+..++.+++.+|.++.  ...+...|.+.+.++  ...++-..+.++|.|+-.+|-.+  +.+.++-.+.+..+
T Consensus       654 ~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~  733 (858)
T COG5215         654 FVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASE  733 (858)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998753  355777888887776  34566678889999998887664  33445544444321


Q ss_pred             -CC----------CchHHHHHHHHHHHHhHhhh--hhhHHhhHHHHHhhh---cCCCCc
Q psy14014        556 -DN----------VANVRFNVAKTLQKIGPILE--TNVIQSQVKPALDKL---NGDTDV  598 (615)
Q Consensus       556 -D~----------~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~l---~~d~d~  598 (615)
                       |+          ..+++..+..++-.|.....  .+...+++..+...+   ..|++.
T Consensus       734 ~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~  792 (858)
T COG5215         734 LDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNG  792 (858)
T ss_pred             cCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCcc
Confidence             11          11334444444444444333  234556666666655   456544

>KOG1242|consensus

Probab=99.86  E-value=1.3e-17  Score=163.31  Aligned_cols=521  Identities=13%  Similarity=0.098  Sum_probs=364.9

Q ss_pred             hhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcC-chhHHHHHHHHHHHHHHhhcChhHHhhh-H
Q psy14014         54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATV-EETVVRDKAVESLRLISAQHSPHDLEAH-F  130 (615)
Q Consensus        54 l~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~  130 (615)
                      ++++..--+|... ||....++........ +.+....+.|.+.+.++. .++.+|+.-..-.+.++.++...+...+ +
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~   97 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI   97 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence            4555433345443 7776666555544433 356677788888776544 4788999998888888888876544332 4


Q ss_pred             HHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhh-hHhhhHH
Q psy14014        131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-LKTDIIP  209 (615)
Q Consensus       131 l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~  209 (615)
                      +..+..-.+.+...++.+...+++.+..........++.+.+.+++...+-.-|+.++..+..+.+..+.+. ....++.
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~  177 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD  177 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence            444444555567788888888888776666666667777778888887777888888888877776554432 2346777


Q ss_pred             HHHHhhccCchhHHH-HHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHH
Q psy14014        210 MFVNLAQDEQDSVRL-LAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLV  286 (615)
Q Consensus       210 ~l~~~~~d~~~~vr~-~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  286 (615)
                      .+....+|.+...++ .+..++......+|+.  .+...++|.+.....|....||.++..+.-.+...+.... ...++
T Consensus       178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~ll  256 (569)
T KOG1242|consen  178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLL  256 (569)
T ss_pred             HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhh
Confidence            788888887765544 6788888888888842  2333456667777889999999999999888888776543 34566


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhh
Q psy14014        287 QAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDH  366 (615)
Q Consensus       287 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~  366 (615)
                      |.++..+.+..|.-+.+++..++.+...-+.  ......+.++|.+.+.+.|..+.||.++.+++..++.++.... .+.
T Consensus       257 psll~~l~~~kWrtK~aslellg~m~~~ap~--qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~  333 (569)
T KOG1242|consen  257 PSLLGSLLEAKWRTKMASLELLGAMADCAPK--QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK  333 (569)
T ss_pred             hhhHHHHHHHhhhhHHHHHHHHHHHHHhchH--HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH
Confidence            6666555555888889999999977764432  2345788999999999999999999999999999988776544 566


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhhh--HhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchH
Q psy14014        367 LLPLFLSQLKDECPEVRLNIISNLD--CVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV  444 (615)
Q Consensus       367 l~p~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~v  444 (615)
                      ++|.+..++.|+...+.... ..|+  .++..+....+.                       .+. |.+...+.+.+...
T Consensus       334 ~ip~Lld~l~dp~~~~~e~~-~~L~~ttFV~~V~~psLa-----------------------lmv-piL~R~l~eRst~~  388 (569)
T KOG1242|consen  334 IIPTLLDALADPSCYTPECL-DSLGATTFVAEVDAPSLA-----------------------LMV-PILKRGLAERSTSI  388 (569)
T ss_pred             HHHHHHHHhcCcccchHHHH-HhhcceeeeeeecchhHH-----------------------HHH-HHHHHHHhhccchh
Confidence            88999999998764544332 2221  122222211111                       111 77888888888888


Q ss_pred             HHHHHHHhHHHHhhh-ChHh---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCC-C
Q psy14014        445 RLAIIEYMPLLAGQL-GVEF---FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQ-N  519 (615)
Q Consensus       445 r~~~~~~l~~l~~~~-~~~~---~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-~  519 (615)
                      +..++..++.+++.. .+.+   |.+.++|-+...+.|..+++|..+.++++.+.+..|...+ ...+|.+.....+. .
T Consensus       389 kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~  467 (569)
T KOG1242|consen  389 KRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKS  467 (569)
T ss_pred             hhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchh
Confidence            899999999999877 3332   5567888888888899999999999999999999998755 67899999877655 5


Q ss_pred             chHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhC--CCCCchHHHHHHHHHHHHh---HhhhhhhHHhhHHHHHhhhcC
Q psy14014        520 YLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMA--GDNVANVRFNVAKTLQKIG---PILETNVIQSQVKPALDKLNG  594 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~--~D~~~~vr~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~l~~  594 (615)
                      ...|..++..++.+....+.+.+.. ++|.+....  ...++.+|....+.+.-+-   .....++..+.+.++++.+ .
T Consensus       468 ~~~~~g~aq~l~evl~~~~v~~~~~-~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~-a  545 (569)
T KOG1242|consen  468 LVDRSGAAQDLSEVLAGLGVEKVED-ILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGL-A  545 (569)
T ss_pred             hhhhHHHhhhHHHHHhcccchHHHH-HHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHh-h
Confidence            5679999999999988777665443 444444432  2334456666555543332   2222345566666666666 5


Q ss_pred             CCCccHHHHHHHH
Q psy14014        595 DTDVDVKYFAQEA  607 (615)
Q Consensus       595 d~d~~v~~~a~~a  607 (615)
                      |.|+.++..+.++
T Consensus       546 d~de~~~~~~~~~  558 (569)
T KOG1242|consen  546 DNDEKGRDTALEA  558 (569)
T ss_pred             hcCCccccchhhh
Confidence            9999998887765

>KOG1242|consensus

Probab=99.86  E-value=5.4e-18  Score=166.02  Aligned_cols=517  Identities=16%  Similarity=0.153  Sum_probs=360.9

Q ss_pred             cCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCC-cchhhhchHHHhhhh
Q psy14014         23 KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGG-PEYVHCLLPPLESLA   99 (615)
Q Consensus        23 ~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~   99 (615)
                      .++.+.+|..-+++....-..-|.+ ....+.|..-+.++...  .+|.......|.++..... ......++..+..-+
T Consensus        27 ~d~~~~v~~~ml~a~~~~~~~~~~~-~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~  105 (569)
T KOG1242|consen   27 EDRRIDVRGNMLEAGEAAINQHGDQ-NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL  105 (569)
T ss_pred             CCcchhhHHhHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence            4556667777777666665555554 55677777777665433  3888887777777765433 223344555555556


Q ss_pred             cCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh--hhHHHHHHHHHHHhC
Q psy14014        100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA--GVKAELRSHFRNLCQ  177 (615)
Q Consensus       100 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~~  177 (615)
                      +.+.+.+|+....++..+...... .-...+++.+.++...+....|..++.-+..+......  .....++..+....+
T Consensus       106 ~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~  184 (569)
T KOG1242|consen  106 DTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII  184 (569)
T ss_pred             CCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence            777889999988888876655433 22345677777777776677777777766666655532  223456677777778


Q ss_pred             CCChH-HHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc
Q psy14014        178 DDTPM-VRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS  254 (615)
Q Consensus       178 d~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  254 (615)
                      |.... .|..+..++...+..+++  +++.-.++|.+..-..|....||.+|..+...+...++.......+.+.+..+.
T Consensus       185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~  264 (569)
T KOG1242|consen  185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL  264 (569)
T ss_pred             ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH
Confidence            86544 444566666777777765  444556667667777799999999999999999999887664444444444444


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHH
Q psy14014        255 GDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYV  332 (615)
Q Consensus       255 ~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  332 (615)
                      ++ .|+.+.++++.+|.++...+...  ..+.++|.+...+.|..++||+++..++..++..+.+..     ...++|.+
T Consensus       265 ~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-----I~~~ip~L  338 (569)
T KOG1242|consen  265 EA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-----IQKIIPTL  338 (569)
T ss_pred             HH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-----HHHHHHHH
Confidence            44 99999999999999888766553  356899999999999999999999999999998776543     56788999


Q ss_pred             HHhhCCCCHHHHHHHHHHH-HhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhh
Q psy14014        333 KDLVADPNQHVKSALASVI-MGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY  411 (615)
Q Consensus       333 ~~~~~d~~~~vR~~~~~~l-~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~  411 (615)
                      .+.+.|++.++..+.-... ..++..+. ......++|.+...+.+++.+.+..++..++.+.....+..|-     ..|
T Consensus       339 ld~l~dp~~~~~e~~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l-----apf  412 (569)
T KOG1242|consen  339 LDALADPSCYTPECLDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL-----APF  412 (569)
T ss_pred             HHHhcCcccchHHHHHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH-----hhh
Confidence            9999999866654432111 11111111 2345578899999999999999998888888777766444332     233


Q ss_pred             hhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCc-chHHHHHHHHH
Q psy14014        412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDH-VYAIREAATLN  490 (615)
Q Consensus       412 l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vR~~a~~~  490 (615)
                      +|.|.              |.+...+.+..+.+|..+..+++.+.+..|...+ +...|.++..+.+. ...-|..+...
T Consensus       413 l~~Ll--------------p~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~  477 (569)
T KOG1242|consen  413 LPSLL--------------PGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQD  477 (569)
T ss_pred             HHHHh--------------hHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhh
Confidence            44333              7777788888899999999999999999998766 77888888887655 44567888888


Q ss_pred             HHHHHHHhChHHhhhchhHHHHhhhc--CCCchHHHHHHHHHHHHHhhhCh--hhHHHhhHHHHHhhCCCCCchHHHHHH
Q psy14014        491 LKKLVEQFGSEWAQSTVIPKVVAMSR--DQNYLHRMTCLFCINVLAEACGP--TVTANFLLPTVLNMAGDNVANVRFNVA  566 (615)
Q Consensus       491 l~~l~~~~~~~~~~~~i~~~l~~~~~--d~~~~~R~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~D~~~~vr~~a~  566 (615)
                      ++.+....|.+.. ..++|.+.....  ...+++|...++.+.-+-...+.  ..+...+++.+.+.+.|.++.+|..+.
T Consensus       478 l~evl~~~~v~~~-~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~  556 (569)
T KOG1242|consen  478 LSEVLAGLGVEKV-EDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL  556 (569)
T ss_pred             HHHHHhcccchHH-HHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence            9988888887643 456777666433  34556777666655544333332  223456778888888899999988776


Q ss_pred             HHH
Q psy14014        567 KTL  569 (615)
Q Consensus       567 ~~l  569 (615)
                      .+=
T Consensus       557 ~~~  559 (569)
T KOG1242|consen  557 EAG  559 (569)
T ss_pred             hhh
Confidence            653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.82  E-value=3.5e-15  Score=143.31  Aligned_cols=549  Identities=13%  Similarity=0.085  Sum_probs=353.1

Q ss_pred             hhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchh-HHHHHHHHHHHHHHhhcChhHH
Q psy14014         49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEET-VVRDKAVESLRLISAQHSPHDL  126 (615)
Q Consensus        49 ~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~-~vr~~a~~~l~~l~~~~~~~~~  126 (615)
                      .++++-....+.+.+..+ .-.++++.++.+++.--....|+.++..+.....++++ .++..++.+++..++...++.+
T Consensus        91 ~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l  170 (858)
T COG5215          91 SKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL  170 (858)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence            555555555556666664 66778888888887533456788888888888888766 6888999999999999888655


Q ss_pred             hhh---HHHHHHH--hhcCCCcchhhhHHhhhhhhccCC-----ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHH
Q psy14014        127 EAH---FVPLVQR--LASGDWFTSRTSACGLFSVCYPRV-----TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK  196 (615)
Q Consensus       127 ~~~---~l~~l~~--l~~~~~~~~r~~a~~~l~~~~~~~-----~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  196 (615)
                      ...   ++-.+..  ..+.+...+|..|.+.+..-+..+     .+..+++++.......+.++.++..++..++..+..
T Consensus       171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~  250 (858)
T COG5215         171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM  250 (858)
T ss_pred             HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence            432   2222222  223345678888877654322121     345567788888888888999999998888877754


Q ss_pred             Hhc---hhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhc----------Chh---------hHHHhHHHHHHHhc
Q psy14014        197 VVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL----------SQS---------DVEQLVMPTLRQCS  254 (615)
Q Consensus       197 ~~~---~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----------~~~---------~~~~~l~~~l~~~~  254 (615)
                      ..-   +....+.+.....+..++++++|...|++.|+.+++.-          +..         .-...++|.+.+++
T Consensus       251 LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL  330 (858)
T COG5215         251 LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL  330 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence            321   12233445566677788999999999999998877632          100         00223667766665


Q ss_pred             C-------CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHh
Q psy14014        255 G-------DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY  327 (615)
Q Consensus       255 ~-------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  327 (615)
                      .       +.+|.+-.++..||.-++...|+... ..++....+.++.+++.-|++|..+++.+...- .+.....++++
T Consensus       331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp-~~~~lT~~V~q  408 (858)
T COG5215         331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGP-CEDCLTKIVPQ  408 (858)
T ss_pred             HhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc-cHHHHHhhHHh
Confidence            2       35799999999999999998887643 447777788899999999999999999887632 22222357888


Q ss_pred             hHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh-hhhhHHHHH---HhhcCCChhHHHHHHHhhhHhhhhhchhHHH
Q psy14014        328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT-VDHLLPLFL---SQLKDECPEVRLNIISNLDCVNEVIGIQQWR  403 (615)
Q Consensus       328 l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~-~~~l~p~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  403 (615)
                      .+|.+.....|+.-.|+..++++++.++..+..... ..++.+...   ..+.| ++.+..++.+....++..+......
T Consensus       409 alp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~  487 (858)
T COG5215         409 ALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVRE  487 (858)
T ss_pred             hhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhcc
Confidence            999999999999999999999999999876442111 113333332   23444 4555555555554444433221100


Q ss_pred             HHHHHHhhhhhhhhccccchhhhhhhhHHHHHh--hhcCCchHHHHHHHHhHHHHhhhChHh------HHHHHHHHHHH-
Q psy14014        404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL--AEDSKWRVRLAIIEYMPLLAGQLGVEF------FDEKLNALCMT-  474 (615)
Q Consensus       404 ~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~--~~~~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~-  474 (615)
                              .+.+    -..|+..++.  .+.+.  ..+.....|.++..+++.+........      +.+.....+-+ 
T Consensus       488 --------~~S~----l~~fY~ai~~--~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~  553 (858)
T COG5215         488 --------VESF----LAKFYLAILN--ALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDEC  553 (858)
T ss_pred             --------ccch----hHHHHHHHHH--HHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence                    0000    0122322221  22221  124456688888888888865433211      12222222111 


Q ss_pred             ------hc--CCc--chHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCCCch-HHHHHHHHHHHHHhhhChhh
Q psy14014        475 ------WL--VDH--VYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQNYL-HRMTCLFCINVLAEACGPTV  541 (615)
Q Consensus       475 ------~l--~d~--~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~-~R~~a~~~l~~l~~~~~~~~  541 (615)
                            .+  .|.  ..++...-+..+..+++..+++  ...+.++..+++.++...+. +-.....+++.++..+++.+
T Consensus       554 isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~F  633 (858)
T COG5215         554 ISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERF  633 (858)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHH
Confidence                  11  121  3456666677777777777763  22344666677767666443 34456678888887776654


Q ss_pred             --HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHhhc
Q psy14014        542 --TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       542 --~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~~~  614 (615)
                        +.+.+.|.+.+.++..+..|-..+...++.+...++++   +...-...+++.|. .--+.+++-.....++.+|.-
T Consensus       634 e~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla  712 (858)
T COG5215         634 EQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA  712 (858)
T ss_pred             HHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence              46789999999999999999999999999998887753   22223444455553 333788898888888888753

>KOG0915|consensus

Probab=99.81  E-value=1.3e-16  Score=168.89  Aligned_cols=548  Identities=17%  Similarity=0.167  Sum_probs=352.9

Q ss_pred             hhhhhhcCCcHH-HHHHHHHHhccccCCCCC-cc---hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhh
Q psy14014         55 PFLTETIYDEDE-VLLALAEQLGTFTPNVGG-PE---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH  129 (615)
Q Consensus        55 ~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~-~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~  129 (615)
                      ..+...+.+.++ +|++.+..|-.++++++. ++   +.+++...+..+++|++.-+++.|...++-+-+.-+...-+..
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L  900 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL  900 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence            334445566665 999999999888888774 22   3466777889999999999999999998876665544333334


Q ss_pred             HHHHHHHhhcCCCcchhh------hHHhhhh------------hhccCCChhhHHHHHHHHHHHhCC-CChHHHHHHHHh
Q psy14014        130 FVPLVQRLASGDWFTSRT------SACGLFS------------VCYPRVTAGVKAELRSHFRNLCQD-DTPMVRRAAAGK  190 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~------~a~~~l~------------~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~  190 (615)
                      +-.++..+........+.      ..-+.++            .++...++--++.+.-.|+++..+ ..|.-|+.++-.
T Consensus       901 V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfG  980 (1702)
T KOG0915|consen  901 VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFG  980 (1702)
T ss_pred             HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhc
Confidence            444445555433211111      1112222            112122222346677778888877 689999999999


Q ss_pred             HHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHhcCCCChHHHHHHH
Q psy14014        191 LGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSGDTSWRVRYMVA  266 (615)
Q Consensus       191 l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~  266 (615)
                      ++.+++..+.  +++...++|-+.++--|++..|+.+....|..+...-..  +.+...++.-+..-+.+..|+||.+++
T Consensus       981 f~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasc 1060 (1702)
T KOG0915|consen  981 FGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASC 1060 (1702)
T ss_pred             hHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            9999998765  567788999999999999999999999999988654222  344555666666667889999999999


Q ss_pred             HHHHHHHHHhCccchhh---hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc------cchhHHHHHhhHHHHHH-hh
Q psy14014        267 DKFTDLQKAVGPEITKT---DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA------YNQENIIMTYILPYVKD-LV  336 (615)
Q Consensus       267 ~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~~~~~l~p~l~~-~~  336 (615)
                      -++..+...-+.+...+   +++..+.+.+.|-...||++|-++...+.+.+..      ....+.....++|++.. .+
T Consensus      1061 lAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gi 1140 (1702)
T KOG0915|consen 1061 LALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGI 1140 (1702)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCc
Confidence            99999887644443333   4555566667788889999876665555543321      12234577889998764 34


Q ss_pred             CCCCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHHHHhhcCCChhHHHH-HHHhhhHhhhhh---------chhHHHH
Q psy14014        337 ADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLN-IISNLDCVNEVI---------GIQQWRV  404 (615)
Q Consensus       337 ~d~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l~~~l~d~~~~vr~~-a~~~l~~l~~~~---------~~~~~~~  404 (615)
                      -+.-..||+.++..+..+++..|+.  .+.+.++|.+......-++.|-.. ++++...=.+.+         +...|+ 
T Consensus      1141 ms~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmme- 1219 (1702)
T KOG0915|consen 1141 MSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMME- 1219 (1702)
T ss_pred             ccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHH-
Confidence            4778999999999999999998873  356678888888777655554322 222211000111         111111 


Q ss_pred             HHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcch
Q psy14014        405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVY  481 (615)
Q Consensus       405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  481 (615)
                            .+....+.+...- .+.+. |.+.++++.. .-..|-.++..+..++..+|.+.  +...++..++..+.|.+.
T Consensus      1220 ------Ti~~ci~~iD~~v-Leeli-p~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1220 ------TINKCINYIDISV-LEELI-PRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNE 1291 (1702)
T ss_pred             ------HHHHHHHhhhHHH-HHHHH-HHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccH
Confidence                  1111111111111 12333 6777777653 55677888888999999888754  678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhChHHhhhchhHHHHh-hhcCCCchHHHHHHHHHHHHHhhhCh--hhHHHhhHHHHHhhCCCCC
Q psy14014        482 AIREAATLNLKKLVEQFGSEWAQSTVIPKVVA-MSRDQNYLHRMTCLFCINVLAEACGP--TVTANFLLPTVLNMAGDNV  558 (615)
Q Consensus       482 ~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~~R~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~D~~  558 (615)
                      .+|.+-..++|.+++.-+++.... ++..++. .+.+.++.. ..++..+..|+.+...  +-....++|.+.-...+.+
T Consensus      1292 sv~kafAsAmG~L~k~Ss~dq~qK-Lie~~l~~~l~k~es~~-siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~ 1369 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLAKFSSPDQMQK-LIETLLADLLGKDESLK-SISCATISNIANYSQEMLKNYASAILPLIFLAMHEEE 1369 (1702)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHH
Confidence            999999999999999877765443 4444444 444444432 5566666655544322  1134668887665554442


Q ss_pred             chHHHHHHHHHHHHhHhh-hhh--hHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        559 ANVRFNVAKTLQKIGPIL-ETN--VIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       559 ~~vr~~a~~~l~~l~~~~-~~~--~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+-..-=-+.+..+.+.- +.-  +..+.+.+++...+++.-..+|.-+..++..++.
T Consensus      1370 Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1370 KANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence            222121222333333221 111  3456677777777777778888888887776654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.81  E-value=5.6e-18  Score=186.30  Aligned_cols=275  Identities=23%  Similarity=0.255  Sum_probs=218.0

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      .++.|...++|+++.||..++..|+.+.        ....++.|...++|+++.||..|+.+|..+....+.        
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------  685 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------  685 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--------
Confidence            4567778889999999999999999864        246788899999999999999999999887653321        


Q ss_pred             HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHH
Q psy14014        326 TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVR  405 (615)
Q Consensus       326 ~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  405 (615)
                         .+.+...++++++.||..++.+|+.+..  +.       .+.+...+.|+++.||..|+.+|..+.    .      
T Consensus       686 ---~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~------  743 (897)
T PRK13800        686 ---APALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVD----D------  743 (897)
T ss_pred             ---hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhccc----C------
Confidence               2456677888999999999999987642  11       235677899999999999999987641    1      


Q ss_pred             HHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHH
Q psy14014        406 LAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIRE  485 (615)
Q Consensus       406 ~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~  485 (615)
                            .                  +.+...+.|+++.||..++..|+.+...-.      ...+.+..+++|+++.||.
T Consensus       744 ------~------------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~  793 (897)
T PRK13800        744 ------V------------------ESVAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRA  793 (897)
T ss_pred             ------c------------------HHHHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHH
Confidence                  0                  244567889999999999999998854211      1356788899999999999


Q ss_pred             HHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHH
Q psy14014        486 AATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNV  565 (615)
Q Consensus       486 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a  565 (615)
                      +|+.+|+.+..    .   ..+.+.+...+.|++|.+|..|+.+|+.+..        +...+.|..+++|++..||..+
T Consensus       794 aA~~aLg~~g~----~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        794 AALAALAELGC----P---PDDVAAATAALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             HHHHHHHhcCC----c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHH
Confidence            99999988732    1   2345668888999999999999999998741        2356889999999999999999


Q ss_pred             HHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHH
Q psy14014        566 AKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISS  610 (615)
Q Consensus       566 ~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~  610 (615)
                      +.+|+.+.       ..+...+.+..+++|.|.+||..|..||..
T Consensus       859 ~~aL~~~~-------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        859 VLALTRWP-------GDPAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhccC-------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999961       123456777788899999999999999864

>PRK09687 putative lyase; Provisional

Probab=99.80  E-value=9.2e-18  Score=157.50  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=195.4

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhh
Q psy14014        286 VQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVD  365 (615)
Q Consensus       286 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~  365 (615)
                      ++.+...+.|++..||..|+.+|+.+..            +.+++.+.++++|+++.+|..++.+|+.+...-.   ...
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~   89 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQD   89 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chH
Confidence            4557777899999999999999987653            4467788888999999999999999998754211   023


Q ss_pred             hhHHHHHHh-hcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchH
Q psy14014        366 HLLPLFLSQ-LKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV  444 (615)
Q Consensus       366 ~l~p~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~v  444 (615)
                      ..+|.+..+ ++|+++.||..|+.+|+.+....  ..|....     +                  +.+...+.|++|+|
T Consensus        90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a-----~------------------~~l~~~~~D~~~~V  144 (280)
T PRK09687         90 NVFNILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKI-----V------------------EQSQITAFDKSTNV  144 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHH-----H------------------HHHHHHhhCCCHHH
Confidence            467777766 68889999999999998763211  1111111     1                  34456678899999


Q ss_pred             HHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHH
Q psy14014        445 RLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRM  524 (615)
Q Consensus       445 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~  524 (615)
                      |..++.+|+.+.        .+..++.+...+.|+++.||..|+.+||.+.  .+    .+.+.+.|..++.|+++.+|.
T Consensus       145 R~~a~~aLg~~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~  210 (280)
T PRK09687        145 RFAVAFALSVIN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRI  210 (280)
T ss_pred             HHHHHHHHhccC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHH
Confidence            999999997653        2357788999999999999999999999882  11    235788899999999999999


Q ss_pred             HHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc-CCCCccHHHH
Q psy14014        525 TCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN-GDTDVDVKYF  603 (615)
Q Consensus       525 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~-~d~d~~v~~~  603 (615)
                      .|+.+||.+..        ...+|.|.+.++|++  +|..++.+|+.+..        +...|.+..+. .++|..|+..
T Consensus       211 ~A~~aLg~~~~--------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~  272 (280)
T PRK09687        211 EAIIGLALRKD--------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITK  272 (280)
T ss_pred             HHHHHHHccCC--------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHH
Confidence            99999999642        357888888888866  78889999999853        34577777775 4889999999


Q ss_pred             HHHHHHH
Q psy14014        604 AQEAISS  610 (615)
Q Consensus       604 a~~a~~~  610 (615)
                      |.+|++.
T Consensus       273 a~~a~~~  279 (280)
T PRK09687        273 AIDKLKR  279 (280)
T ss_pred             HHHHHhc
Confidence            9999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.80  E-value=1.6e-17  Score=182.60  Aligned_cols=275  Identities=18%  Similarity=0.186  Sum_probs=203.2

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHH
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLV  286 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  286 (615)
                      -++.+.+.++|+++.||..|+..|+.+.        .+..+|.|...++|+++.||..++.+|+.+.....       -.
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PA  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------ch
Confidence            4556677778999999999988888763        23467777788889999999999888887754322       12


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhh
Q psy14014        287 QAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDH  366 (615)
Q Consensus       287 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~  366 (615)
                      +.+...++++++.||..|+.+|+.+...  .           .+.+.+.+.|+++.||..++.+|+.+..          
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------  743 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-----------AALFAAALGDPDHRVRIEAVRALVSVDD----------  743 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------
Confidence            4566778888899999998888875321  0           1234567889999999999888887522          


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHH
Q psy14014        367 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRL  446 (615)
Q Consensus       367 l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~  446 (615)
                       .+.+...+.|+++.||..++.+|+.+...-..     .      +                  +.+..+++|+++.+|.
T Consensus       744 -~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~-----~------~------------------~~L~~ll~D~d~~VR~  793 (897)
T PRK13800        744 -VESVAGAATDENREVRIAVAKGLATLGAGGAP-----A------G------------------DAVRALTGDPDPLVRA  793 (897)
T ss_pred             -cHHHHHHhcCCCHHHHHHHHHHHHHhccccch-----h------H------------------HHHHHHhcCCCHHHHH
Confidence             13456778888999999999988876431110     0      1                  4566778888899999


Q ss_pred             HHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHH
Q psy14014        447 AIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTC  526 (615)
Q Consensus       447 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a  526 (615)
                      .++..|+.+..       .+...+.+...+.|+++.||..|+.+|+.+.    .    +..++.|..+++|+++.||..+
T Consensus       794 aA~~aLg~~g~-------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----~----~~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        794 AALAALAELGC-------PPDDVAAATAALRASAWQVRQGAARALAGAA----A----DVAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             HHHHHHHhcCC-------cchhHHHHHHHhcCCChHHHHHHHHHHHhcc----c----cchHHHHHHHhcCCCHHHHHHH
Confidence            99998887732       1123455778888999999999999987653    1    2456888888899999999999


Q ss_pred             HHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHH
Q psy14014        527 LFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQK  571 (615)
Q Consensus       527 ~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~  571 (615)
                      +.+|+.+.  .+     +...+.|.++++|++++||..|..+|..
T Consensus       859 ~~aL~~~~--~~-----~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        859 VLALTRWP--GD-----PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhccC--CC-----HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999982  11     2357778888899999999999998864

>PTZ00429 beta-adaptin; Provisional

Probab=99.79  E-value=3.3e-14  Score=149.26  Aligned_cols=504  Identities=13%  Similarity=0.087  Sum_probs=317.1

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhch
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      .+..+.+.|.+.+...|..+++.+-... ..|.+  ...+.+-+..++..++ ++|+.+-.-+..+++.  .++..--.+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~m-t~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI  107 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANM-TMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV  107 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence            4677777888888877777777665542 23443  2334444455555555 5777766666555542  122222335


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  172 (615)
                      +.|.+-+.|+++.+|-.|+.+++.+..                                          +.+.+.+.+.+
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~------------------------------------------~~i~e~l~~~l  145 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIRV------------------------------------------SSVLEYTLEPL  145 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCCc------------------------------------------HHHHHHHHHHH
Confidence            556666677788888888776664311                                          22234445556


Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh-HHHhHHHHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD-VEQLVMPTLR  251 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~  251 (615)
                      .+.+.|.++.||+.|+-++..+....+.......+++.+.+++.|.++.|...|+.++..+.+..+..- .....+..+.
T Consensus       146 kk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll  225 (746)
T PTZ00429        146 RRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLV  225 (746)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence            788899999999999999999877655433344677888889999999999999999999876654310 1112223333


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCc-cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014        252 QCSGDTSWRVRYMVADKFTDLQKAVGP-EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP  330 (615)
Q Consensus       252 ~~~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p  330 (615)
                      ..+.+-+.+-+..+.+.|...   .+. +.....++..+...+++.++.|.-+|++.+-.+.....++.. ......+.+
T Consensus       226 ~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~-~~~~~rl~~  301 (746)
T PTZ00429        226 YHLPECNEWGQLYILELLAAQ---RPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI-ERCTVRVNT  301 (746)
T ss_pred             HHhhcCChHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH-HHHHHHHHH
Confidence            444444444555666655332   111 112346778888888999999999999998877654422211 112223334


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHh
Q psy14014        331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIE  410 (615)
Q Consensus       331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~  410 (615)
                      .+..+ ...++.+|-.++..+..+.... +..+.++ +..|....+|+. .||...++.+..++..-....         
T Consensus       302 pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv~~---------  368 (746)
T PTZ00429        302 ALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVAPE---------  368 (746)
T ss_pred             HHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCcccHHH---------
Confidence            44444 4567889999998887776533 2222222 344444556643 578877777765543221111         


Q ss_pred             hhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy14014        411 YMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN  490 (615)
Q Consensus       411 ~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~  490 (615)
                      .+                  ..+.+...+.+..++..++.+++.++..+..  ..+.++..+++++.+...-+ ..++..
T Consensus       369 IL------------------~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~~v-~e~i~v  427 (746)
T PTZ00429        369 IL------------------KELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPELL-PQVVTA  427 (746)
T ss_pred             HH------------------HHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCchhH-HHHHHH
Confidence            01                  2444555677778999999999999876654  35667778888887654433 356788


Q ss_pred             HHHHHHHhChHHhhhchhHHHHhhh---cCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHH
Q psy14014        491 LKKLVEQFGSEWAQSTVIPKVVAMS---RDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAK  567 (615)
Q Consensus       491 l~~l~~~~~~~~~~~~i~~~l~~~~---~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~  567 (615)
                      +..+.+.....    .+++.+...+   .-.++..|.+.+|.+|+.++..+.   ...++..+..-..+..+.||..+..
T Consensus       428 ik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLt  500 (746)
T PTZ00429        428 AKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILS  500 (746)
T ss_pred             HHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHH
Confidence            88887765432    2455555432   224778899999999998876532   2233333334445678899999999


Q ss_pred             HHHHHhHhhhhhhHHhhHHHHHhhhc-CCCCccHHHHHHHHHHH
Q psy14014        568 TLQKIGPILETNVIQSQVKPALDKLN-GDTDVDVKYFAQEAISS  610 (615)
Q Consensus       568 ~l~~l~~~~~~~~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~  610 (615)
                      +...+.-..+++ ....+..++..+. .+.|+|||..|..-...
T Consensus       501 a~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rL  543 (746)
T PTZ00429        501 AAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDVRDRAFAYWRL  543 (746)
T ss_pred             HHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence            998887665432 3455677776664 46788999999865443

>PRK09687 putative lyase; Provisional

Probab=99.79  E-value=2.6e-17  Score=154.50  Aligned_cols=220  Identities=20%  Similarity=0.175  Sum_probs=159.0

Q ss_pred             HHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHH-hCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHH
Q psy14014        133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL-CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF  211 (615)
Q Consensus       133 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l  211 (615)
                      .+..+.++++..+|..++..++.+-..  .......++.+..+ .+|+++.||..++.+||.++....  ......++.+
T Consensus        58 ~l~~ll~~~d~~vR~~A~~aLg~lg~~--~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l  133 (280)
T PRK09687         58 LAIELCSSKNPIERDIGADILSQLGMA--KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQS  133 (280)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHH
Confidence            333344444444444444444443110  00123445555555 689999999999999999854221  1134566677


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHH
Q psy14014        212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQM  291 (615)
Q Consensus       212 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  291 (615)
                      ...+.|+++.||..++.+|+.+.        .+..++.|..+++|++|.||..++.+||.+..      ..+...+.+..
T Consensus       134 ~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~------~~~~~~~~L~~  199 (280)
T PRK09687        134 QITAFDKSTNVRFAVAFALSVIN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKY------DNPDIREAFVA  199 (280)
T ss_pred             HHHhhCCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC------CCHHHHHHHHH
Confidence            77888999999999999997542        24478889999999999999999999998721      13478889999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHH
Q psy14014        292 LLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF  371 (615)
Q Consensus       292 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l  371 (615)
                      .+.|.+++||..|+.+|+.+..            ...+|.|.+.+++++  +|..++.+++.+..        +..+|.+
T Consensus       200 ~L~D~~~~VR~~A~~aLg~~~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L  257 (280)
T PRK09687        200 MLQDKNEEIRIEAIIGLALRKD------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVL  257 (280)
T ss_pred             HhcCCChHHHHHHHHHHHccCC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHH
Confidence            9999999999999999987543            457888888898877  56778888887754        2578999


Q ss_pred             HHhhc-CCChhHHHHHHHhhhH
Q psy14014        372 LSQLK-DECPEVRLNIISNLDC  392 (615)
Q Consensus       372 ~~~l~-d~~~~vr~~a~~~l~~  392 (615)
                      .++++ +++..|+..+++++.+
T Consensus       258 ~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        258 DTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHhhCCChhHHHHHHHHHhc
Confidence            99986 7788999999887653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.79  E-value=4.9e-16  Score=164.21  Aligned_cols=470  Identities=17%  Similarity=0.168  Sum_probs=286.1

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhch
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      .....+..+.++|...|..+--.+..+... .++ ...-....+..=+.++++ +|..|.++++.+.    .++..+.+.
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~  116 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE-DPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLI  116 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTT-SHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-chh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHH
Confidence            445566667788888776666666655321 111 111122223333445554 8999999999876    467788899


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh----hhHHHH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKAEL  168 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l  168 (615)
                      +.+.+++.|+++.||..|+.++.++....++ .+...+.|.+..+..|++..++.+|+.++..+  ..++    .....+
T Consensus       117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~  193 (526)
T PF01602_consen  117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKL  193 (526)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHH
Confidence            9999999999999999999999999888554 22222788888888777788888888877777  2222    234445


Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHH
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP  248 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  248 (615)
                      .+.+.+++.+.++..+..+++.+..++..-........+++.+..++++.++.|...++.++..+..   .......+++
T Consensus       194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~  270 (526)
T PF01602_consen  194 IRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAIN  270 (526)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHH
T ss_pred             HHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhHH
Confidence            5555666688888888888887776654332221114677888888888888888777777664432   3334566788


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhh
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYI  328 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  328 (615)
                      .+..++.++++.+|..+++++..++...+....  .....+..+..+++..+|..++..+..++..-        -...+
T Consensus       271 ~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--------n~~~I  340 (526)
T PF01602_consen  271 PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANES--------NVKEI  340 (526)
T ss_dssp             HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--------HHHHH
T ss_pred             HHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhccccc--------chhhH
Confidence            888888888888888888888887765422211  22222333334778888888888887776521        23445


Q ss_pred             HHHHHHhhCCC-CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHH
Q psy14014        329 LPYVKDLVADP-NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLA  407 (615)
Q Consensus       329 ~p~l~~~~~d~-~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  407 (615)
                      ++.+.+.+.+. +..+|..++.+++.++..+...  .+..++.+.+++...++.+...++..+..+.......  +... 
T Consensus       341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~-  415 (526)
T PF01602_consen  341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKI-  415 (526)
T ss_dssp             HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHH-
T ss_pred             HHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHH-
Confidence            55555556333 6678888888888887766432  2345666777776655666666655555544322111  0000 


Q ss_pred             HHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhCh-HhHHHHHHHHHHHhcCCcchHHHH
Q psy14014        408 IIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGV-EFFDEKLNALCMTWLVDHVYAIRE  485 (615)
Q Consensus       408 i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vR~  485 (615)
                          +                  ..+.+.+.+ ....++..++..+|..+..... + ....++..+.+...+.+..+|.
T Consensus       416 ----l------------------~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~  472 (526)
T PF01602_consen  416 ----L------------------KKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKL  472 (526)
T ss_dssp             ----H------------------HHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHH
T ss_pred             ----H------------------HHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHH
Confidence                1                  122233322 3444566666666666554443 2 2334445555555555666677


Q ss_pred             HHHHHHHHHHHHhChHHhhhchhHHHHhhhc--CCCchHHHHHHHHHHHH
Q psy14014        486 AATLNLKKLVEQFGSEWAQSTVIPKVVAMSR--DQNYLHRMTCLFCINVL  533 (615)
Q Consensus       486 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~--d~~~~~R~~a~~~l~~l  533 (615)
                      ..+.++.++....+.....+.+.+.+.++..  +.++.+|+.|...+.-+
T Consensus       473 ~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll  522 (526)
T PF01602_consen  473 QILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL  522 (526)
T ss_dssp             HHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            7766666666655432223345556666555  55666666666654443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0212|consensus

Probab=99.77  E-value=6.1e-16  Score=148.37  Aligned_cols=401  Identities=17%  Similarity=0.192  Sum_probs=300.0

Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhchhh---hHhhhHH-HHHHhhccCchhHHHHHHHHHHHHHhhcChh--hHHHh
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIP-MFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQL  245 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~-~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~  245 (615)
                      +.+.+.|+..+-|++++.-+..+.+.+-...   ...+++. ....+....+..-|+.++-.+...+-.+|.+  .+...
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~   84 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK   84 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence            3556688888899999888888877553322   2233333 3444555667777888888887776667654  35677


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI  323 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  323 (615)
                      ++|.+..++.|++-++|+.+++++.++++....+.  ..+.+...+.++..|++..||. ++.-+..+.+.+..+.....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tF  163 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTF  163 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccccccc
Confidence            88999999999999999999999999998876654  2457888999999999999984 66788888887766554445


Q ss_pred             HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH
Q psy14014        324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ  401 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  401 (615)
                      ..+.++|.+.+.+.+.++.+|...++++..+-...+-+  .+.+.+++.+.+++.|++++||.-+-.+++.+...+.++.
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P  243 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP  243 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence            68899999999999999999999999998876554433  3466789999999999999999888877777765443211


Q ss_pred             HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCc
Q psy14014        402 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDH  479 (615)
Q Consensus       402 ~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~  479 (615)
                      -.        +         + +++.+  +.+..-+.+++..++..++..+..+.+..|.+.  +.+.++..++..+.++
T Consensus       244 ~s--------~---------d-~~~~i--~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~  303 (675)
T KOG0212|consen  244 SS--------M---------D-YDDMI--NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT  303 (675)
T ss_pred             cc--------c---------C-cccch--hhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC
Confidence            00        0         0 00001  344455667788889999999999998888865  3456666777777777


Q ss_pred             ch-HHHHHHHHHHHHHHHHhChHH-----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH--HHhhHHHHH
Q psy14014        480 VY-AIREAATLNLKKLVEQFGSEW-----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT--ANFLLPTVL  551 (615)
Q Consensus       480 ~~-~vR~~a~~~l~~l~~~~~~~~-----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~--~~~i~~~l~  551 (615)
                      .. ..+..+...-+.+...++.+.     ....++..+...+.+..-..|.+++.++..+....+.+.+  .+.+.+.|.
T Consensus       304 e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL  383 (675)
T KOG0212|consen  304 EEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLL  383 (675)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence            66 588888887777777665542     2346888888899999999999999999999888777664  467999999


Q ss_pred             hhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc
Q psy14014        552 NMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  593 (615)
Q Consensus       552 ~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~  593 (615)
                      +.+.|++..|..-+...++.+++......+.+.+..++....
T Consensus       384 ~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~  425 (675)
T KOG0212|consen  384 KTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFK  425 (675)
T ss_pred             HhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh
Confidence            999999999999999999999865544333344444444443

>KOG0915|consensus

Probab=99.71  E-value=4.9e-13  Score=142.50  Aligned_cols=523  Identities=18%  Similarity=0.179  Sum_probs=324.0

Q ss_pred             CCCCCCcchHHHHHHH-hcCccHHHHHHHHhcHHHHHHHhCcch----hhccchhhhhhhcCCcHH-HHHHHHHHhcccc
Q psy14014          6 SAPDDSLYPIAVLIDE-LKNEDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIYDEDE-VLLALAEQLGTFT   79 (615)
Q Consensus         6 ~~~~~~~~~i~~ll~~-l~s~d~~~R~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~   79 (615)
                      ...|+..+-|...+.. +.|+++..|.+++-=|-.+.+.+|...    ..+++..-+..++.|++| ++..+++.||-+-
T Consensus       810 ~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVY  889 (1702)
T KOG0915|consen  810 KVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVY  889 (1702)
T ss_pred             ccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEE
Confidence            4455666666666655 669999999999988888888887432    335666667778899998 8888888887655


Q ss_pred             CCCCCcchhhhchHH---------------------------------------------------------HhhhhcCc
Q psy14014         80 PNVGGPEYVHCLLPP---------------------------------------------------------LESLATVE  102 (615)
Q Consensus        80 ~~~~~~~~~~~l~~~---------------------------------------------------------l~~l~~~~  102 (615)
                      + +|+....+.+..-                                                         +.+|..+.
T Consensus       890 e-lgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~  968 (1702)
T KOG0915|consen  890 E-LGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHN  968 (1702)
T ss_pred             e-cCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence            4 2322211111111                                                         12222221


Q ss_pred             -hhHHHHHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcCCCcchhhhHHhhhhhhccCC---ChhhHHHHHHHHHHH
Q psy14014        103 -ETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV---TAGVKAELRSHFRNL  175 (615)
Q Consensus       103 -~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~---~~~~~~~l~~~l~~l  175 (615)
                       ..+-|..|+..++.+++.... .+++   .++|.+.+.--|++..++.+-..+-+.+.+.-   .+.+.++|+.-++..
T Consensus       969 A~wnSk~GaAfGf~~i~~~a~~-kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen  969 ATWNSKKGAAFGFGAIAKQAGE-KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred             chhhcccchhhchHHHHHHHHH-hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence             246777777888887777643 3333   47888888888988888877666666555443   244567788778888


Q ss_pred             hCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHH---HHHhhccCchhHHHHHHHHHHHHHhhcC----------hhhH
Q psy14014        176 CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM---FVNLAQDEQDSVRLLAVEACVSIASLLS----------QSDV  242 (615)
Q Consensus       176 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~---l~~~~~d~~~~vr~~a~~~l~~l~~~~~----------~~~~  242 (615)
                      +.+..|+||.++|.++..+.+.-+.+...+.+..+   +.+...|-.+.||++|-.+...+++.+-          ....
T Consensus      1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence            89999999999999999999876555444443333   3444456778899998877766655432          2345


Q ss_pred             HHhHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCCcHHH-------------------
Q psy14014        243 EQLVMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDSEAEV-------------------  300 (615)
Q Consensus       243 ~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~v-------------------  300 (615)
                      ...++|.+.. ..-+....||+.++.++..++...|....  ..+++|.|.+....-++.|                   
T Consensus      1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~ 1207 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTL 1207 (1702)
T ss_pred             HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHH
Confidence            5668888754 33467789999999999999999887643  4578998888887666544                   


Q ss_pred             HHHHHHH------HHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHH
Q psy14014        301 RAAAANK------VRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPILGKH--NTVDHLLPLF  371 (615)
Q Consensus       301 r~~a~~~------l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l  371 (615)
                      |..+++.      +..++.+++     ...++++.|.+.+++.. ..-..|.+++..+..++..+|.+  .+...++..+
T Consensus      1208 R~s~aksspmmeTi~~ci~~iD-----~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al 1282 (1702)
T KOG0915|consen 1208 RASAAKSSPMMETINKCINYID-----ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRAL 1282 (1702)
T ss_pred             HHhhhcCCcHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHH
Confidence            2222222      111111111     23567888888887764 45677888888888888888864  4677899999


Q ss_pred             HHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccc-------------hhhhhhh------hHH
Q psy14014        372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVE-------------FFDEKLN------ALS  432 (615)
Q Consensus       372 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~-------------~~~~~l~------~~~  432 (615)
                      ...++|+++.+|.....+.+.+.+...+++....+  ..++..+.+.....             +..+.+.      .|.
T Consensus      1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi--e~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPL 1360 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI--ETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPL 1360 (1702)
T ss_pred             hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH--HHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHH
Confidence            99999999999999999998888776655443322  00110000000000             0000000      011


Q ss_pred             HHHhhhcCCchHHHHHHHHhHHHHh-hhCh-H-hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH---Hhhhc
Q psy14014        433 IVELAEDSKWRVRLAIIEYMPLLAG-QLGV-E-FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE---WAQST  506 (615)
Q Consensus       433 i~~~~~~~~~~vr~~~~~~l~~l~~-~~~~-~-~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~  506 (615)
                      +.-...+..-.....--+.+..+.. ..|. . +..+.+.+.+.+..++..|.+|..+...+..++......   ...-.
T Consensus      1361 iFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilk 1440 (1702)
T KOG0915|consen 1361 IFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILK 1440 (1702)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHH
Confidence            1111111000000000001111110 0011 1 223456667777788888999999999998888765432   11223


Q ss_pred             hhHHHHhhhcCCCchHHHHHHHHHHHHHhhh
Q psy14014        507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEAC  537 (615)
Q Consensus       507 i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~  537 (615)
                      +.+.+...+..+.|.-+...++++....+.+
T Consensus      1441 l~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~ 1471 (1702)
T KOG0915|consen 1441 LALSLLDTLNGRIWDGKEEILKALASAFEAG 1471 (1702)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence            5566666677777766666666666554443

>KOG0212|consensus

Probab=99.70  E-value=1.4e-13  Score=132.50  Aligned_cols=450  Identities=14%  Similarity=0.121  Sum_probs=297.8

Q ss_pred             hcCchhHHHHHHHHHHHHHHhhcCh----hHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCC---hhhHHHHHHH
Q psy14014         99 ATVEETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT---AGVKAELRSH  171 (615)
Q Consensus        99 ~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---~~~~~~l~~~  171 (615)
                      ++|.-.+-|.+|+--+.++.+.+-.    +.+.+.+-.+...++.++....|+.+.--+....-.++   ....+.+++-
T Consensus         9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P   88 (675)
T KOG0212|consen    9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP   88 (675)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence            4555566666666666665554322    22233333344556666666666643322221111111   2245666777


Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh----HHHh
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQL  245 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~  245 (615)
                      .+..+.|.+..||..+|+++-.+++....+  .+.+.++..+.++..|.+..||..| +.+..+.+.+..+.    -.+.
T Consensus        89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~  167 (675)
T KOG0212|consen   89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPE  167 (675)
T ss_pred             HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHH
Confidence            778889999999999999999999987654  2456788889999999999999874 55555555544322    2456


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI  323 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  323 (615)
                      ++|.+.+-+.+.++.+|......+..+-..-+-++  ..+.+++.+.+++.|+.++||..+-..++.|...+...... .
T Consensus       168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-~  246 (675)
T KOG0212|consen  168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-M  246 (675)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-c
Confidence            89999999999999999999988877654333222  24678999999999999999999999999998876533211 0


Q ss_pred             HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh--hhhhHHHHHHhhcCCCh-hHHHHHHHhhhHhhhhhchh
Q psy14014        324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECP-EVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~--~~~l~p~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~  400 (615)
                      -.+.+.+.+...++.+++.++..++.++..+.+..|.+..  ...++..+++++.+..+ ..+..+...-+.+...++.+
T Consensus       247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~  326 (675)
T KOG0212|consen  247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE  326 (675)
T ss_pred             CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence            1355777777888999999999999999999988887543  33456667777776544 46655554433333333322


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhH--HHHHHHHHHHhcCC
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFF--DEKLNALCMTWLVD  478 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d  478 (615)
                      ...+..   +             +...+  ..+.+.+.+.....|-++++.+..+-...+.+.+  .+.+++.+++.+.|
T Consensus       327 ~~~~~i---d-------------~~~ii--~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd  388 (675)
T KOG0212|consen  327 RLKEEI---D-------------YGSII--EVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD  388 (675)
T ss_pred             hhcccc---c-------------hHHHH--HHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC
Confidence            111000   0             01111  3555667788888999999999998887776653  47789999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCC
Q psy14014        479 HVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNV  558 (615)
Q Consensus       479 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~  558 (615)
                      ++..|-..++..+..++..-+.. ....++..|++++....--.+..+...+..++-.+.++.+...+-.++.   ..++
T Consensus       389 ~sd~vvl~~L~lla~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe---~e~n  464 (675)
T KOG0212|consen  389 RSDEVVLLALSLLASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILE---REEN  464 (675)
T ss_pred             chhHHHHHHHHHHHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHh---cccc
Confidence            99999999999999998754321 1234566777777666555566666667777766666554443434433   2444


Q ss_pred             chHHHHHHHHHHHH
Q psy14014        559 ANVRFNVAKTLQKI  572 (615)
Q Consensus       559 ~~vr~~a~~~l~~l  572 (615)
                      -+.-....++|..+
T Consensus       465 l~FAstMV~~Ln~i  478 (675)
T KOG0212|consen  465 LKFASTMVQALNTI  478 (675)
T ss_pred             chHHHHHHHHHHhh
Confidence            44444555555444

>KOG1240|consensus

Probab=99.68  E-value=2.6e-15  Score=155.84  Aligned_cols=273  Identities=22%  Similarity=0.281  Sum_probs=210.1

Q ss_pred             CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh------hhHHHhHHHHHHH
Q psy14014        179 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ------SDVEQLVMPTLRQ  252 (615)
Q Consensus       179 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~  252 (615)
                      ....-|..|++.+..++.....+.....++|++..++.|+...||..|+.++..+...+.+      ..+.++++|.+..
T Consensus       435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~  514 (1431)
T KOG1240|consen  435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH  514 (1431)
T ss_pred             hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence            3556688888889999988888888888999999999999999999999988877665542      3456678999999


Q ss_pred             hcCC-CChHHHHHHHHHHHHHHHHhC---------------ccc------------hh----hhHHHHHHHhhcCCcHHH
Q psy14014        253 CSGD-TSWRVRYMVADKFTDLQKAVG---------------PEI------------TK----TDLVQAFQMLLKDSEAEV  300 (615)
Q Consensus       253 ~~~d-~~~~vR~~~~~~l~~l~~~~~---------------~~~------------~~----~~l~~~l~~~l~d~~~~v  300 (615)
                      ++.| ....||.+.+.+++.++...-               ++.            ..    ..+-.....++.|+.+-|
T Consensus       515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~V  594 (1431)
T KOG1240|consen  515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIV  594 (1431)
T ss_pred             hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHH
Confidence            9888 667899999998888875310               000            00    113344667889999999


Q ss_pred             HHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCCh
Q psy14014        301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECP  380 (615)
Q Consensus       301 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~  380 (615)
                      |.+-+.++..+|..++++...    +.+++.|...++|.+|+.|.++.+.|..++-.+|.....++++|.+.+.+.|..+
T Consensus       595 kr~Lle~i~~LC~FFGk~ksN----D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE  670 (1431)
T KOG1240|consen  595 KRALLESIIPLCVFFGKEKSN----DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEE  670 (1431)
T ss_pred             HHHHHHHHHHHHHHhhhcccc----cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcch
Confidence            999999999999999887543    5578888889999999999999999999999999988889999999999999999


Q ss_pred             hHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC
Q psy14014        381 EVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG  460 (615)
Q Consensus       381 ~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~  460 (615)
                      -|-..|+.+++.+++.--   +++. +..+.+                  ....-++-.+|-.+|.+++..+..++..++
T Consensus       671 ~Viv~aL~~ls~Lik~~l---l~K~-~v~~i~------------------~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls  728 (1431)
T KOG1240|consen  671 AVIVSALGSLSILIKLGL---LRKP-AVKDIL------------------QDVLPLLCHPNLWIRRAVLGIIAAIARQLS  728 (1431)
T ss_pred             hhHHHHHHHHHHHHHhcc---cchH-HHHHHH------------------HhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence            999999999988876321   1111 111112                  233334556777799999999999999988


Q ss_pred             hHhHHHHHHHHHHHhcC
Q psy14014        461 VEFFDEKLNALCMTWLV  477 (615)
Q Consensus       461 ~~~~~~~l~~~l~~~l~  477 (615)
                      ....+..++|.+-.++.
T Consensus       729 ~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  729 AADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             hhhheEEeehhhHHhhh
Confidence            76555556665555444

>PTZ00429 beta-adaptin; Provisional

Probab=99.67  E-value=4.4e-12  Score=133.49  Aligned_cols=218  Identities=16%  Similarity=0.124  Sum_probs=157.7

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhH
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV  246 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  246 (615)
                      .+++.+.++++.++..+|+.+.-.+..+++.-+..  .-..++.+.+-++|+++.+|..|+.+++.+    ....+.+.+
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--alLaINtl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l  141 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--ALLAVNTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYT  141 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHH
Confidence            35555667788889999999998888886533221  223467778888899999999999988764    334566778


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      .+.+.+++.|+++.||++++.++.++....+.......+++.+.+++.|.++.|..+|+.+|..+....+...   ....
T Consensus       142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l---~l~~  218 (746)
T PTZ00429        142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI---ESSN  218 (746)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh---HHHH
Confidence            8889999999999999999999999887655433344688889999999999999999999999876443211   1122


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      ..+..+...+.+-++.-+..+++.+......  .+.....++..+...++..++.|...|++++-.+..
T Consensus       219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        219 EWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            2334444555666666677777776442211  122234577778888888899999999998776654

>KOG0166|consensus

Probab=99.66  E-value=1.7e-13  Score=134.16  Aligned_cols=382  Identities=13%  Similarity=0.129  Sum_probs=265.7

Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc---c
Q psy14014        209 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE---I  280 (615)
Q Consensus       209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~---~  280 (615)
                      +...+.+...+...+..+...+..+.+.-..    +.+...++|.+.+++. +.++.++..++.+|.+++......   +
T Consensus        69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v  148 (514)
T KOG0166|consen   69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV  148 (514)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence            3333344444444455555555554443332    1223357888888775 667889999999999998743322   2


Q ss_pred             hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCH-HHHHHHHHHHHhhchhhc
Q psy14014        281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQ-HVKSALASVIMGLSPILG  359 (615)
Q Consensus       281 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~-~vR~~~~~~l~~l~~~~g  359 (615)
                      .....+|.|++++.+++.+|++.|+.+|+.++..- +..+...+...+++.|..++...+. ...+.+.+++.+++..-.
T Consensus       149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds-~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS-PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC-hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            34578999999999999999999999999988753 3333333444566666666666554 778889999999998643


Q ss_pred             c-h--hhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh
Q psy14014        360 K-H--NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL  436 (615)
Q Consensus       360 ~-~--~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~  436 (615)
                      + .  .....++|.+..++.+.+++|...|+.+++.+.....+  .-+..--....                  |.+..+
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne--~iq~vi~~gvv------------------~~LV~l  287 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE--KIQMVIDAGVV------------------PRLVDL  287 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH--HHHHHHHccch------------------HHHHHH
Confidence            2 1  23567899999999999999999999999877643322  11111000011                  788888


Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhChH---HhhhchhH
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGSE---WAQSTVIP  509 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~  509 (615)
                      +......++..++.+++.++..-+.   .......+|.+..++. .+...+|+.|+.++++|...-...   .....++|
T Consensus       288 L~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p  367 (514)
T KOG0166|consen  288 LGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIP  367 (514)
T ss_pred             HcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHH
Confidence            9888989999999999997653222   1233557788888887 666779999999999998732111   12235899


Q ss_pred             HHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh------h
Q psy14014        510 KVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET------N  579 (615)
Q Consensus       510 ~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~------~  579 (615)
                      .|..++...+...|..|+++++++.....++-.    ...+++.+..++.-.|..+-..+..++..+...-+.      .
T Consensus       368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n  447 (514)
T KOG0166|consen  368 VLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTN  447 (514)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999876654432    345788889988877888877888888888765321      2


Q ss_pred             hHHhh-----HHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        580 VIQSQ-----VKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       580 ~~~~~-----~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                      .+...     ...-++.|...+++++...|...++.+
T Consensus       448 ~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y  484 (514)
T KOG0166|consen  448 PLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY  484 (514)
T ss_pred             HHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence            22222     233456677788888988888877654

>KOG1240|consensus

Probab=99.61  E-value=1.9e-14  Score=149.59  Aligned_cols=298  Identities=19%  Similarity=0.210  Sum_probs=200.3

Q ss_pred             HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh------hHHhhhHHHHHHHhhcC
Q psy14014         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP------HDLEAHFVPLVQRLASG  140 (615)
Q Consensus        67 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~l~~l~~l~~~  140 (615)
                      -|..|.+.|..++.++.++..++.++|-+..+..|+...||..|++++..+.....+      ..+.++++|.+..+..|
T Consensus       439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d  518 (1431)
T KOG1240|consen  439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND  518 (1431)
T ss_pred             hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence            455666666667766666666777777777777888888888888777776655432      23345666666666666


Q ss_pred             -CCcchhhhHHhhhhhhccCCChhhHHHHHHHHHH--HhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc
Q psy14014        141 -DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN--LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD  217 (615)
Q Consensus       141 -~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~--l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d  217 (615)
                       ....+|.+-+..++.++.......  ++-..+..  +..|++.+   ...+    --...+.......+-..+.+++.|
T Consensus       519 ~~~~~vRiayAsnla~LA~tA~rFl--e~~q~~~~~g~~n~~nse---t~~~----~~~~~~~~~L~~~V~~~v~sLlsd  589 (1431)
T KOG1240|consen  519 SSAQIVRIAYASNLAQLAKTAYRFL--ELTQELRQAGMLNDPNSE---TAPE----QNYNTELQALHHTVEQMVSSLLSD  589 (1431)
T ss_pred             CccceehhhHHhhHHHHHHHHHHHH--HHHHHHHhcccccCcccc---cccc----cccchHHHHHHHHHHHHHHHHHcC
Confidence             344455554444444432211000  00000000  11222221   0000    000000011122344566778899


Q ss_pred             CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc
Q psy14014        218 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE  297 (615)
Q Consensus       218 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  297 (615)
                      +.+.||++-++.+..++..+|++.-...+++.+..+++|.+|..|.+..+.+..++..+|..-..+-++|++.+.+.|.+
T Consensus       590 ~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E  669 (1431)
T KOG1240|consen  590 SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE  669 (1431)
T ss_pred             CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc
Confidence            99999999999999999999998777789999999999999999999999999888888876556789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc
Q psy14014        298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK  376 (615)
Q Consensus       298 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~  376 (615)
                      +.|-..|+.++..+++.-.   ..+..+.+++..+..++-.++..+|++++..|..+...++.....-.++|.+-.++.
T Consensus       670 E~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  670 EAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             hhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence            9999999999999887421   112345556666667788999999999999999998888765444445555555443

>KOG0166|consensus

Probab=99.60  E-value=3.9e-12  Score=124.72  Aligned_cols=381  Identities=14%  Similarity=0.136  Sum_probs=265.4

Q ss_pred             HHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChhh---
Q psy14014        170 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQSD---  241 (615)
Q Consensus       170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~---  241 (615)
                      +...+.....++..+..+...+..+...-..    +.....++|.+.+.++ +.++.++..|..++..++.......   
T Consensus        69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v  148 (514)
T KOG0166|consen   69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV  148 (514)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence            3334444445555566666666655443221    2345578999998886 7779999999999999988766532   


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCcH-HHHHHHHHHHHHHHhhccc
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSEA-EVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~  317 (615)
                      .....+|.+..++.+++..||+.++.+||+++....   +......+++.++.++....+ .....+..+|..++..-.+
T Consensus       149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P  228 (514)
T KOG0166|consen  149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP  228 (514)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence            233578999999999999999999999999875322   222233556666666666554 6677899999999986532


Q ss_pred             cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hh-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        318 YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       318 ~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      ... -.....++|.|..++.+.++.|..-+++++..++.....  +. ....++|.+..+|...+..|+..|+++++.++
T Consensus       229 ~P~-~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  229 SPP-FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCc-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            211 124678999999999999999999999999999864332  11 12357899999999999999999999998864


Q ss_pred             hhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhChH-----hHHHHH
Q psy14014        395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGVE-----FFDEKL  468 (615)
Q Consensus       395 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l  468 (615)
                      .  |.+...+.+-....+                  |.+..++. ++...+|..++..+..|+.  |..     .+...+
T Consensus       308 t--G~d~QTq~vi~~~~L------------------~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l  365 (514)
T KOG0166|consen  308 T--GSDEQTQVVINSGAL------------------PVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANL  365 (514)
T ss_pred             e--ccHHHHHHHHhcChH------------------HHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHccc
Confidence            3  434333332111112                  56666666 5666799999999999976  432     245678


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh----hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---Ch--
Q psy14014        469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA----QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GP--  539 (615)
Q Consensus       469 ~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~--  539 (615)
                      +|.++..+....+..|+.|+.+++.+...-.++..    ...+++.+-+++.-.+...-..++.++..+.+..   +.  
T Consensus       366 ~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~  445 (514)
T KOG0166|consen  366 IPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG  445 (514)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999998875444321    2347888888887677766666777887776542   11  


Q ss_pred             -hhHH-----HhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        540 -TVTA-----NFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       540 -~~~~-----~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                       ..+.     ...+..+..+....+.++...|.+.+....
T Consensus       446 ~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf  485 (514)
T KOG0166|consen  446 TNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYF  485 (514)
T ss_pred             ccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhc
Confidence             1111     134556666666777677776666666554

>KOG4224|consensus

Probab=99.48  E-value=5.3e-12  Score=115.32  Aligned_cols=344  Identities=15%  Similarity=0.123  Sum_probs=196.9

Q ss_pred             HHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhH---hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH--H
Q psy14014        170 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK---TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE--Q  244 (615)
Q Consensus       170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~  244 (615)
                      .-+..++++.++.+..+++..+|.++-..+.....   ..+-+.+.++..|.. +||..++.|+..++..-......  .
T Consensus        88 epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~kiA~s  166 (550)
T KOG4224|consen   88 EPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKVKIARS  166 (550)
T ss_pred             hHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchhhhhhc
Confidence            33466778999999999999999998766553322   234457777776655 68888899998888763322111  1


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc--chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        245 LVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE--ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       245 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      ..+..+..+.+.++.++|+.+..++..+.....+.  .....-+|++..+++..++.||..+..+++.+.-.-....+-.
T Consensus       167 GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La  246 (550)
T KOG4224|consen  167 GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA  246 (550)
T ss_pred             cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence            23445566888889999999999988877654322  2223568999999999999999999999988765321111111


Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  400 (615)
                      ..-+.++|.+..++.|++++++..+..++..++.....  +.....-+|.++++++++.-..-..-.-++..+.-+-+. 
T Consensus       247 qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-  325 (550)
T KOG4224|consen  247 QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-  325 (550)
T ss_pred             hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-
Confidence            12345888899999999999999998888888753221  222223467777777664322111111111000000000 


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhc
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWL  476 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l  476 (615)
                         .                ....+.-+.. -+..+++- .+..++..+...+..++......   ++...-+|.+..++
T Consensus       326 ---e----------------~lI~dagfl~-pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~  385 (550)
T KOG4224|consen  326 ---E----------------VLIADAGFLR-PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL  385 (550)
T ss_pred             ---c----------------cceecccchh-HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH
Confidence               0                0000001111 13334433 23335555555555555433331   12234455555555


Q ss_pred             CCcchHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHh
Q psy14014        477 VDHVYAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE  535 (615)
Q Consensus       477 ~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~  535 (615)
                      .|....+|..-..++..++-.-..  .+....++|.|..+..+.+-.+|-+++.+++++++
T Consensus       386 lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  386 LDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             hcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            555555555555555555432111  11112255555555555555566666665555543

>KOG1943|consensus

Probab=99.47  E-value=3.4e-08  Score=103.28  Aligned_cols=429  Identities=19%  Similarity=0.167  Sum_probs=248.1

Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhh-cChhh
Q psy14014        164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASL-LSQSD  241 (615)
Q Consensus       164 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~-~~~~~  241 (615)
                      ..+.+...+...++|.+..||..+++.++.+++..+.+... ..+.....+++..+ +..=..|+-++.+++.. +-...
T Consensus       338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            45567778888899999999999999999999998865322 23333333333211 22333666666666542 11112


Q ss_pred             HHHhHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHhCccchh---hhHHH-HHHHhhcCCcHHHHHHHHHHHH
Q psy14014        242 VEQLVMPTLRQCSG--------DTSWRVRYMVADKFTDLQKAVGPEITK---TDLVQ-AFQMLLKDSEAEVRAAAANKVR  309 (615)
Q Consensus       242 ~~~~l~~~l~~~~~--------d~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~-~l~~~l~d~~~~vr~~a~~~l~  309 (615)
                      ....++|.+.+.+.        .....||.+++..+..++..+.+....   ..+.+ .+...+-|.+-.+|.+|..++-
T Consensus       417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq  496 (1133)
T KOG1943|consen  417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ  496 (1133)
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence            34567888776553        234679999999999999887655322   23433 4566778999999999999998


Q ss_pred             HHHhhccccc----------------hhH----------HHHHhhHHHHHHh----hCCCCHHHHHHHHHHHHhhchhhc
Q psy14014        310 DFCQNLDAYN----------------QEN----------IIMTYILPYVKDL----VADPNQHVKSALASVIMGLSPILG  359 (615)
Q Consensus       310 ~~~~~~~~~~----------------~~~----------~~~~~l~p~l~~~----~~d~~~~vR~~~~~~l~~l~~~~g  359 (615)
                      +.....++-.                +.+          .+..-.-|.+..+    +..=+..+|..++.+|..+.....
T Consensus       497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p  576 (1133)
T KOG1943|consen  497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP  576 (1133)
T ss_pred             HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence            8776543321                000          0011111222222    233356779999999999766433


Q ss_pred             chhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH-----HHHHHHHHhhhhhhhhccccchhhhhhhhHHHH
Q psy14014        360 KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV  434 (615)
Q Consensus       360 ~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~  434 (615)
                       +...++.+|.++......+...|.++..+.+.+......-.     ..+..  +..++.+..             |.+.
T Consensus       577 -k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~--i~~l~~ii~-------------~~~~  640 (1133)
T KOG1943|consen  577 -KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENR--IAGLLSIIP-------------PICD  640 (1133)
T ss_pred             -HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHH--hhhhhhhcc-------------HHHH
Confidence             33444566666666656678888888877776654321100     00000  000100000             1111


Q ss_pred             Hhhh-cCCchHHHHHHHHhHHHHhhh---ChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh--ChHHhhhchh
Q psy14014        435 ELAE-DSKWRVRLAIIEYMPLLAGQL---GVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF--GSEWAQSTVI  508 (615)
Q Consensus       435 ~~~~-~~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~i~  508 (615)
                      .-.. .....+|.+.+..+..+...-   -.+++.+.....+.+.+.+++ .+|.+|..+++.++..+  +++.....++
T Consensus       641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li  719 (1133)
T KOG1943|consen  641 RYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLI  719 (1133)
T ss_pred             HHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHH
Confidence            1110 001235666666666554322   123444555555666667777 89999999999998765  2221212355


Q ss_pred             HHHHhhhcCC-CchHHHHHHHHHHHHHhh-hChhhHHHhhHHHHH-hhCCCCCchHHHHHHHHHHHHhHhhhh----h--
Q psy14014        509 PKVVAMSRDQ-NYLHRMTCLFCINVLAEA-CGPTVTANFLLPTVL-NMAGDNVANVRFNVAKTLQKIGPILET----N--  579 (615)
Q Consensus       509 ~~l~~~~~d~-~~~~R~~a~~~l~~l~~~-~~~~~~~~~i~~~l~-~~~~D~~~~vr~~a~~~l~~l~~~~~~----~--  579 (615)
                      ...+..+.+. +..+|+....+++.+-.. +.-. ..+.+...+. ....|..+.-|.....++.+++...+.    .  
T Consensus       720 ~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~-~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~  798 (1133)
T KOG1943|consen  720 TRYLSRLTKCSEERIRRGLILALGVLPSELIHRH-LQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESI  798 (1133)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHccCcHHhhchH-HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence            6666655555 778888888888876422 1111 1222333222 234666889999999999999877652    2  


Q ss_pred             -hHHhhHHHHHhhhcCCCCccH----HHHHHHHHHHH
Q psy14014        580 -VIQSQVKPALDKLNGDTDVDV----KYFAQEAISSI  611 (615)
Q Consensus       580 -~~~~~~~~~l~~l~~d~d~~v----~~~a~~a~~~~  611 (615)
                       .+.+.+..++..+..|...||    |+.|..|+..+
T Consensus       799 ~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~  835 (1133)
T KOG1943|consen  799 EKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSL  835 (1133)
T ss_pred             HHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhh
Confidence             223334444445567776665    55565665544

>KOG1060|consensus

Probab=99.45  E-value=7.9e-10  Score=111.08  Aligned_cols=261  Identities=16%  Similarity=0.149  Sum_probs=153.5

Q ss_pred             hHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch--------
Q psy14014        328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI--------  399 (615)
Q Consensus       328 l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------  399 (615)
                      ++.....++.+.++.|--+++.+...++...    -...+...++.+|.. +.+|+.-.+..+..+......        
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKs  362 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKS  362 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhc
Confidence            3444444556666666667777766665432    123456666666665 455555555555544321100        


Q ss_pred             ------hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHH
Q psy14014        400 ------QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM  473 (615)
Q Consensus       400 ------~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  473 (615)
                            +......--++.+..++..-   ...+++  +.+....++.+.++-..++.+++..++..+.  ..+..+.-+.
T Consensus       363 Ffv~ssDp~~vk~lKleiLs~La~es---ni~~IL--rE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv  435 (968)
T KOG1060|consen  363 FFVRSSDPTQVKILKLEILSNLANES---NISEIL--RELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLV  435 (968)
T ss_pred             eEeecCCHHHHHHHHHHHHHHHhhhc---cHHHHH--HHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHH
Confidence                  00000000011122222211   122223  3455556666667888888999998887765  3466777888


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHh
Q psy14014        474 TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN  552 (615)
Q Consensus       474 ~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  552 (615)
                      .++..++..|-..++..+..+...-..+  ...++..|.+++.. ..+.-|...+|.+|..++..+  ...+.++-.+.+
T Consensus       436 ~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~lak  511 (968)
T KOG1060|consen  436 QLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAK  511 (968)
T ss_pred             HHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHH
Confidence            8888889999999999999998763322  23477777776633 366778888899998876532  123344555555


Q ss_pred             hCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh-cCCCCccHHHHHHH
Q psy14014        553 MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL-NGDTDVDVKYFAQE  606 (615)
Q Consensus       553 ~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l-~~d~d~~v~~~a~~  606 (615)
                      -..|..+.||..+...-..+.-.....  ...+..-+-.| .-|...++|..|..
T Consensus       512 sFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRaRF  564 (968)
T KOG1060|consen  512 SFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRARF  564 (968)
T ss_pred             hhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHHHH
Confidence            678999999998888777765332111  22233333333 46888888888764

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.44  E-value=1.2e-09  Score=112.41  Aligned_cols=379  Identities=15%  Similarity=0.147  Sum_probs=245.6

Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHH
Q psy14014        211 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQ  287 (615)
Q Consensus       211 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~  287 (615)
                      +...+++.+.+.-..+..++..+..........+...+.+...+.++++.||..+++.++.++..-..   -.....+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            55555666666667788889888888888777888999999999999999999999998887643211   112357899


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hhh--h
Q psy14014        288 AFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-HNT--V  364 (615)
Q Consensus       288 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~~--~  364 (615)
                      .+..++.|++.+|...|+.+|..++..-..  ....+.+...+.+..++...+..+|.-+.+.+..++..-.. -..  .
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~  200 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEG--LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN  200 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchh--HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            999999999999999999999999874221  11122233477788888877888888888888877654221 111  1


Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh----hcC
Q psy14014        365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA----EDS  440 (615)
Q Consensus       365 ~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~----~~~  440 (615)
                      ..+++.+...++++|.-|+..+++.+..+.+.-..-.+-...   ..+                  +.+.+.+    .|+
T Consensus       201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~---gi~------------------~~L~~~l~~~~~dp  259 (503)
T PF10508_consen  201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQ---GIF------------------DKLSNLLQDSEEDP  259 (503)
T ss_pred             ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhC---CHH------------------HHHHHHHhccccCC
Confidence            247888889899888889999999999887622111111000   011                  2333333    233


Q ss_pred             -CchHH-HHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh-ChHHh-h------hchh
Q psy14014        441 -KWRVR-LAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF-GSEWA-Q------STVI  508 (615)
Q Consensus       441 -~~~vr-~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~~-~------~~i~  508 (615)
                       ...+. -..+..++.++..-+..+  .++.++..++.++...+...+..|+.++|.++... |.... .      +.++
T Consensus       260 ~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l  339 (503)
T PF10508_consen  260 RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVL  339 (503)
T ss_pred             cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHH
Confidence             11111 123345555554422222  23667777888888899999999999999998543 22211 1      1234


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---hhH---H--------Hh-hHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TVT---A--------NF-LLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~---~--------~~-i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      ..+...........|..++.+++.+......   +..   .        +. ....+..+++.|=+++|.++...|..++
T Consensus       340 ~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~  419 (503)
T PF10508_consen  340 KAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALA  419 (503)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence            4444455566777999999999999654332   111   0        11 1116677788899999999999999998


Q ss_pred             HhhhhhhHHhhHHHHHhhh---cCCCCccHHHHHHHHHHHHh
Q psy14014        574 PILETNVIQSQVKPALDKL---NGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       574 ~~~~~~~~~~~~~~~l~~l---~~d~d~~v~~~a~~a~~~~~  612 (615)
                      .+-......-.-...++-+   .++.+.+.+++=.+.++.++
T Consensus       420 ~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  420 AQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             cCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            6643211111111222222   36667777766666666655

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.37  E-value=1.5e-10  Score=105.10  Aligned_cols=346  Identities=12%  Similarity=0.138  Sum_probs=227.6

Q ss_pred             hHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccch
Q psy14014        245 LVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ  320 (615)
Q Consensus       245 ~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  320 (615)
                      .++|-+.+++.. ...-....++.++.+++.....+   +.....+|.|++++.+.+.+||+.++.+|+.++..- ..++
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS-~~~R  192 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS-EGCR  192 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc-hhHH
Confidence            356667776633 33334557788888888654433   123468999999999999999999999999887642 2223


Q ss_pred             hHHHHHhhHHHHHHhhCCCCH--HHHHHHHHHHHhhchhhcch---hhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        321 ENIIMTYILPYVKDLVADPNQ--HVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       321 ~~~~~~~l~p~l~~~~~d~~~--~vR~~~~~~l~~l~~~~g~~---~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      .-.+....+..+..++.+.-.  ..-+.+-+.|.+++..-.+.   ....+.+|.+.+++...+++|...|+.+++-+..
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence            222333344445555554433  55678889999998764442   2355789999999999999999999999887654


Q ss_pred             hhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHH
Q psy14014        396 VIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALC  472 (615)
Q Consensus       396 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l  472 (615)
                      ...+. ..   ++++.        |.      .  +.+.+++.+++-.+..-++..++.+...-..   -......++.+
T Consensus       273 g~~E~-i~---avld~--------g~------~--~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~  332 (526)
T COG5064         273 GPNEK-IQ---AVLDV--------GI------P--GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAF  332 (526)
T ss_pred             CcHHH-HH---HHHhc--------CC------c--HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHH
Confidence            32111 00   11111        00      0  4677888888888888888888887652211   11223356666


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhC--hhhH----H
Q psy14014        473 MTWLVDHVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACG--PTVT----A  543 (615)
Q Consensus       473 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~--~~~~----~  543 (615)
                      ..+|.++...+|+.|+.++..+...-...   ..-..++|.|..++...++..|..||+++.+....+-  |+.+    .
T Consensus       333 ~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~  412 (526)
T COG5064         333 RSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS  412 (526)
T ss_pred             HHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH
Confidence            67788888899999999999886532111   1123589999999999999999999999999865432  2221    2


Q ss_pred             HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---------hhHH-----hhHHHHHhhhcCCCCccHHHHHHHHHH
Q psy14014        544 NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---------NVIQ-----SQVKPALDKLNGDTDVDVKYFAQEAIS  609 (615)
Q Consensus       544 ~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~---------~~~~-----~~~~~~l~~l~~d~d~~v~~~a~~a~~  609 (615)
                      +.+...|..++.-.+..+-..+..++..+...-..         +.+.     ......+..+.+..+.++...|...+.
T Consensus       413 qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe  492 (526)
T COG5064         413 QGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIE  492 (526)
T ss_pred             ccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHH
Confidence            34455677777655555666677888777654211         1111     123356667777778888888877766


Q ss_pred             HH
Q psy14014        610 SI  611 (615)
Q Consensus       610 ~~  611 (615)
                      .+
T Consensus       493 ~f  494 (526)
T COG5064         493 KF  494 (526)
T ss_pred             HH
Confidence            54

>KOG1943|consensus

Probab=99.35  E-value=1.2e-08  Score=106.55  Aligned_cols=497  Identities=15%  Similarity=0.097  Sum_probs=269.4

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCC-CCCcchhhhc
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPN-VGGPEYVHCL   91 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~-~~~~~~~~~l   91 (615)
                      |+.++..+.+.|..+|++|++.++.+..+++++ ...+++.-+..++...+  ..-..++-+|+.++.. +-.+.....+
T Consensus       343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV  421 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV  421 (1133)
T ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            777888888899999999999999998888766 55555555555444322  3555777777777642 2224445666


Q ss_pred             hHHHhhhhcCc--------hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh
Q psy14014         92 LPPLESLATVE--------ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (615)
Q Consensus        92 ~~~l~~l~~~~--------~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  163 (615)
                      +|++..-+.-+        ...||++|+-.+-.++..-.+..+.+.+..+..                            
T Consensus       422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s----------------------------  473 (1133)
T KOG1943|consen  422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLAS----------------------------  473 (1133)
T ss_pred             HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHH----------------------------
Confidence            77665444322        246788887777777666665544442211111                            


Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH
Q psy14014        164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  243 (615)
Q Consensus       164 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  243 (615)
                            -++...+-|++-.+|++|.-++-+.....+.-+..-.++..    .+.=.-.-|..+...+......++. -..
T Consensus       474 ------~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~----~dy~sV~~rsNcy~~l~~~ia~~~~-y~~  542 (1133)
T KOG1943|consen  474 ------ALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLIST----IDYFSVTNRSNCYLDLCVSIAEFSG-YRE  542 (1133)
T ss_pred             ------HHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhh----cchhhhhhhhhHHHHHhHHHHhhhh-HHH
Confidence                  12345567888889998888777665433321111111111    1111112233333333222222111 011


Q ss_pred             HhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc--h-
Q psy14014        244 QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN--Q-  320 (615)
Q Consensus       244 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~-  320 (615)
                      +.+-+.+.+-+.+-+..+|..++.+|.+++...++.. .+..+|.++......+...|.....+.+.+...+..-.  . 
T Consensus       543 ~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~  621 (1133)
T KOG1943|consen  543 PVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIK  621 (1133)
T ss_pred             HHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhh
Confidence            2222333333556677899999999999887665543 34556666666777888889988888888776553221  0 


Q ss_pred             --hHH---HHHhhHHHHHHhhCCCC--HHHHHHHHHHHHhhchhh---cchhhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014        321 --ENI---IMTYILPYVKDLVADPN--QHVKSALASVIMGLSPIL---GKHNTVDHLLPLFLSQLKDECPEVRLNIISNL  390 (615)
Q Consensus       321 --~~~---~~~~l~p~l~~~~~d~~--~~vR~~~~~~l~~l~~~~---g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l  390 (615)
                        .+.   ....++|.+.....+..  .-.|.+.+..+..+...-   -.+...+.....+.+.+++.+ .+|..|.+++
T Consensus       622 ~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av  700 (1133)
T KOG1943|consen  622 GLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAV  700 (1133)
T ss_pred             hhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHH
Confidence              000   11122333322222222  445666666665543210   112222223334444444444 7888888888


Q ss_pred             hHhhhhh--chhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHH
Q psy14014        391 DCVNEVI--GIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKL  468 (615)
Q Consensus       391 ~~l~~~~--~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  468 (615)
                      +.++...  .++....                      .+....+..+.+..+.++|.....+++.+....=.....+.+
T Consensus       701 ~~l~s~y~~~d~~~~~----------------------~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l  758 (1133)
T KOG1943|consen  701 SDLVSTYVKADEGEEA----------------------PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL  758 (1133)
T ss_pred             HHHHHHHHhcCchhhh----------------------HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH
Confidence            8776432  1111000                      000022333334446777877776666554221111122333


Q ss_pred             HHHHHHhc-CCcchHHHHHHHHHHHHHHHHhChHH---hhhchhHHHHhhh----cCC----CchHHHHHHHHHHHHHhh
Q psy14014        469 NALCMTWL-VDHVYAIREAATLNLKKLVEQFGSEW---AQSTVIPKVVAMS----RDQ----NYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       469 ~~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~----~d~----~~~~R~~a~~~l~~l~~~  536 (615)
                      ...++... .|....-|...+.++..+.+.++...   ..+.+...|++.+    .|.    ...+|..|.+++..+...
T Consensus       759 c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~  838 (1133)
T KOG1943|consen  759 CKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDT  838 (1133)
T ss_pred             HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhh
Confidence            33333332 33366788889999888888776321   1123444444433    332    457899999999998766


Q ss_pred             hC-hhhHHHh-hHHH---HHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        537 CG-PTVTANF-LLPT---VLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       537 ~~-~~~~~~~-i~~~---l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                      +. ++.+.+. +.+.   +.+-.-|+....|..++.++.++...
T Consensus       839 l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  839 LSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             hcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence            54 4443322 2232   23334466667789999999888654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.34  E-value=1.2e-08  Score=105.34  Aligned_cols=380  Identities=16%  Similarity=0.142  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh----hHHHHHHHHHHHhCCCChHH
Q psy14014        108 DKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG----VKAELRSHFRNLCQDDTPMV  183 (615)
Q Consensus       108 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~v  183 (615)
                      ..++.+|..+........+.+.+.+++.+...+++..+|..++..++.+..+-...    ...++++.+..++.|++..|
T Consensus        56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V  135 (503)
T PF10508_consen   56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV  135 (503)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence            34444444444444444444444444444444444444444444444333222110    12457778889999999999


Q ss_pred             HHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh---HHHhHHHHHHHhcCCCC
Q psy14014        184 RRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSGDTS  258 (615)
Q Consensus       184 R~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d~~  258 (615)
                      .+.|+.++..+++.-..  ..+.+.+.+.+..++..+++.+|....+.+..++..-+...   ....+++.+...+++.+
T Consensus       136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD  215 (503)
T PF10508_consen  136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD  215 (503)
T ss_pred             HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence            99999999999874322  12233447778888877788999999999888876654321   12247888888888899


Q ss_pred             hHHHHHHHHHHHHHHHHhCc-c-chhhhHHHHHHHhhcCCcHHHHH------HHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014        259 WRVRYMVADKFTDLQKAVGP-E-ITKTDLVQAFQMLLKDSEAEVRA------AAANKVRDFCQNLDAYNQENIIMTYILP  330 (615)
Q Consensus       259 ~~vR~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~------~a~~~l~~~~~~~~~~~~~~~~~~~l~p  330 (615)
                      .-+|..+++.+..++..-.. + .....+++.+...+.+...+-|.      +.++.++.+... .+... ....+.++.
T Consensus       216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v-~~~~p~~~~  293 (503)
T PF10508_consen  216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEV-LELYPAFLE  293 (503)
T ss_pred             HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHH-HHHHHHHHH
Confidence            99999999999999872111 1 12235677777776554322222      222344444433 11111 112355666


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhchhhc-chhh-------hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHH
Q psy14014        331 YVKDLVADPNQHVKSALASVIMGLSPILG-KHNT-------VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQW  402 (615)
Q Consensus       331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g-~~~~-------~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  402 (615)
                      .+..++++.+...+..|.++++.++.... ....       ...++..+.........++|..++.+++.+.....+..-
T Consensus       294 ~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~  373 (503)
T PF10508_consen  294 RLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD  373 (503)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch
Confidence            77778889999999999999999986543 2222       123344444455556678999999999888654332111


Q ss_pred             HHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh-ChHhHH--HHHHHHHHHhcCCc
Q psy14014        403 RVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL-GVEFFD--EKLNALCMTWLVDH  479 (615)
Q Consensus       403 ~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~~--~~l~~~l~~~l~d~  479 (615)
                      .+-..+   ....-..++.....     ..+...++.+-+.+|.++...+..++..- |...+.  +.++.++++.-.++
T Consensus       374 ~~i~~~---~~~w~~~~~~~~~~-----~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~  445 (503)
T PF10508_consen  374 NDILSI---TESWYESLSGSPLS-----NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTET  445 (503)
T ss_pred             HHHHHH---HHHHHHHhcCCchH-----HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCC
Confidence            110000   11001111111000     14556667777778888888887776532 221111  23444444444455


Q ss_pred             chHHHHHHHHHHHHHHHH
Q psy14014        480 VYAIREAATLNLKKLVEQ  497 (615)
Q Consensus       480 ~~~vR~~a~~~l~~l~~~  497 (615)
                      +...+++=..++..+++.
T Consensus       446 ~K~~ke~K~~ii~~l~~~  463 (503)
T PF10508_consen  446 TKEGKEAKYDIIKALAKS  463 (503)
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            666666666666666644

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4224|consensus

Probab=99.33  E-value=1.1e-10  Score=106.87  Aligned_cols=346  Identities=14%  Similarity=0.125  Sum_probs=242.6

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchh---hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK---TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      ....+..++.+++..+..++...+|+++...++....   ..+-+.+.+++.|.. +||..+..++..+...-  +.+.+
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d--~nk~k  162 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFD--SNKVK  162 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccc--cchhh
Confidence            3444556778889999999999999999887766432   234456777776665 77888888888777642  22221


Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh--hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~--~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  400 (615)
                      .-....+..+.++.+.++.++|+.+..++..+........  ...--+|.++.+++..+..||..+..+++.+.-.   .
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd---~  239 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD---R  239 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh---H
Confidence            2122233345568899999999999999998876654321  2223579999999999999999999888765311   1


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh--ChHhHHHHHHHHHHHhcCC
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL--GVEFFDEKLNALCMTWLVD  478 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d  478 (615)
                      .-++.+  .+.-|.+.              |.+..++++++.+++..+..++..++...  -.+.....-+|.+.+++++
T Consensus       240 ~~Rk~L--aqaep~lv--------------~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs  303 (550)
T KOG4224|consen  240 RARKIL--AQAEPKLV--------------PALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQS  303 (550)
T ss_pred             HHHHHH--HhcccchH--------------HHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC
Confidence            111221  11122222              78889999999999999999999987533  2333444568899999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHH-hh-hchhHHHHhhhcCC-CchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHh
Q psy14014        479 HVYAIREAATLNLKKLVEQFGSEW-AQ-STVIPKVVAMSRDQ-NYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLN  552 (615)
Q Consensus       479 ~~~~vR~~a~~~l~~l~~~~~~~~-~~-~~i~~~l~~~~~d~-~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~  552 (615)
                      +.-..-.+.+.|+..+.-.-+.+. .. .-++..|..++.-. |...+..|..++..++-....   .++.....|.+..
T Consensus       304 ~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e  383 (550)
T KOG4224|consen  304 PMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE  383 (550)
T ss_pred             cchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence            988888888888888765433321 11 12455566665544 555788888888888754322   2345678899999


Q ss_pred             hCCCCCchHHHHHHHHHHHHhHhh--hhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        553 MAGDNVANVRFNVAKTLQKIGPIL--ETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       553 ~~~D~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ++-|.--.||.....+++++.-.-  ........+.|++..++.++.++||.+|.+|+..+.+
T Consensus       384 L~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  384 LLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            999999999999999998886322  2234456678888888899999999999999998765

>KOG1060|consensus

Probab=99.31  E-value=5.3e-08  Score=98.34  Aligned_cols=483  Identities=16%  Similarity=0.136  Sum_probs=288.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcH-HHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhch
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKL-STIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l-~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      +..+|+.  +.|..+ ..|++.+ +.+++  |.+  ...+.|-+...+..++ +|++-+--=|-++++.-.+..  =-=+
T Consensus        40 L~~lLdS--nkd~~K-leAmKRIia~iA~--G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--LLSI  110 (968)
T KOG1060|consen   40 LKQLLDS--NKDSLK-LEAMKRIIALIAK--GKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--LLSI  110 (968)
T ss_pred             HHHHHhc--cccHHH-HHHHHHHHHHHhc--CCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--eeeH
Confidence            4444443  344444 4566554 44454  222  3456666555555555 799888777777776321110  0114


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  172 (615)
                      ..++.-+.|+++.+|-.|+.+|..+-    -..+.+.++-.++..+.|+...+|..|+..+..+|..-+ +...++...+
T Consensus       111 ntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I  185 (968)
T KOG1060|consen  111 NTFQKALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVI  185 (968)
T ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHH
Confidence            45788889999999999998887652    233456677778888999999999999999999986544 4445888999


Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHh---hccCchhHHHHHHHHHHHHHhhcCh----------
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL---AQDEQDSVRLLAVEACVSIASLLSQ----------  239 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~---~~d~~~~vr~~a~~~l~~l~~~~~~----------  239 (615)
                      ..++.|.++.|--.|+-++.++|-.     ....|-+.+.++   +.|-+++=+-..+..|...++.--.          
T Consensus       186 ~~LLaD~splVvgsAv~AF~evCPe-----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e  260 (968)
T KOG1060|consen  186 KKLLADRSPLVVGSAVMAFEEVCPE-----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLE  260 (968)
T ss_pred             HHHhcCCCCcchhHHHHHHHHhchh-----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccc
Confidence            9999999999999998888887642     123344444444   3466666666667777666654210          


Q ss_pred             ---------------------hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcH
Q psy14014        240 ---------------------SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEA  298 (615)
Q Consensus       240 ---------------------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  298 (615)
                                           +.-...+++...-++...+..|-.++++.+..++...    ....+...|.+++... .
T Consensus       261 ~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~  335 (968)
T KOG1060|consen  261 DNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-R  335 (968)
T ss_pred             cCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-C
Confidence                                 0111224444455667777888888888887777542    2346777788877554 4


Q ss_pred             HHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh-CCCCH-HHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc
Q psy14014        299 EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV-ADPNQ-HVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK  376 (615)
Q Consensus       299 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~-~d~~~-~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~  376 (615)
                      ++|...++++..++..-+         ..+.|+++... ...++ .++.-=++.|..++.    +.....+++-|.-.++
T Consensus       336 ~vqyvvL~nIa~~s~~~~---------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~----esni~~ILrE~q~YI~  402 (968)
T KOG1060|consen  336 EVQYVVLQNIATISIKRP---------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLAN----ESNISEILRELQTYIK  402 (968)
T ss_pred             cchhhhHHHHHHHHhcch---------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHh
Confidence            778888888888776432         33556666532 22222 333333444444433    2234457777777777


Q ss_pred             CCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHH
Q psy14014        377 DECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLA  456 (615)
Q Consensus       377 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~  456 (615)
                      +.+.++...++++++.+....+.  |...+     +                  .-+..++++.+..|-..++..+..+.
T Consensus       403 s~d~~faa~aV~AiGrCA~~~~s--v~~tC-----L------------------~gLv~Llsshde~Vv~eaV~vIk~Ll  457 (968)
T KOG1060|consen  403 SSDRSFAAAAVKAIGRCASRIGS--VTDTC-----L------------------NGLVQLLSSHDELVVAEAVVVIKRLL  457 (968)
T ss_pred             cCchhHHHHHHHHHHHHHHhhCc--hhhHH-----H------------------HHHHHHHhcccchhHHHHHHHHHHHH
Confidence            76667888888888877665542  33322     2                  24455666677777777777777776


Q ss_pred             hhhChHhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHh
Q psy14014        457 GQLGVEFFDEKLNALCMTWLVD-HVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE  535 (615)
Q Consensus       457 ~~~~~~~~~~~l~~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~  535 (615)
                      +.-..+.  ..++..+.+++.. ..+.-|.+.++.+|..+....  .....++..+.+-+.+..+.+|...+.....+.-
T Consensus       458 q~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl  533 (968)
T KOG1060|consen  458 QKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL  533 (968)
T ss_pred             hhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence            6443332  1233334444421 234455555666666554321  1123344445555677777788776665555532


Q ss_pred             hhChhhHHHhhHHHHHhhC-CCCCchHHHHH
Q psy14014        536 ACGPTVTANFLLPTVLNMA-GDNVANVRFNV  565 (615)
Q Consensus       536 ~~~~~~~~~~i~~~l~~~~-~D~~~~vr~~a  565 (615)
                      .-. +. ...+...+..+. -|...++|..+
T Consensus       534 ~~~-~~-~kll~~Yv~~L~~yD~sYDiRDRa  562 (968)
T KOG1060|consen  534 TNI-DQ-TKLLVQYVFELARYDLSYDIRDRA  562 (968)
T ss_pred             ech-hh-HHHHHHHHHHHhccCCCcchhHHH
Confidence            211 11 122333333332 46666666643

>KOG1061|consensus

Probab=99.26  E-value=1.9e-08  Score=102.04  Aligned_cols=513  Identities=14%  Similarity=0.159  Sum_probs=287.1

Q ss_pred             CCCCCCCCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhcccc
Q psy14014          1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFT   79 (615)
Q Consensus         1 ~~~~~~~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~   79 (615)
                      |++|--+.+++...+..+..++.|.-+..|..|++.+-.- -.+|.+ . ..+-|=+.......+ +.++..-.=+...+
T Consensus         1 M~d~k~F~~~~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D-v-SslF~dvvk~~~T~dlelKKlvyLYl~nYa   77 (734)
T KOG1061|consen    1 MSDSKYFSTDKKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD-V-SSLFPDVVKCMQTRDLELKKLVYLYLMNYA   77 (734)
T ss_pred             CCCccccCcchhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc-h-HhhhHHHHhhcccCCchHHHHHHHHHHHhh
Confidence            4555566677767777788888777777777777654433 234443 1 122222223333333 45554444444444


Q ss_pred             CCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccC
Q psy14014         80 PNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (615)
Q Consensus        80 ~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~  159 (615)
                      ..  .+......++.+..-..|+++.+|..|+..++.+    .                                     
T Consensus        78 ~~--~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~-------------------------------------  114 (734)
T KOG1061|consen   78 KG--KPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL----R-------------------------------------  114 (734)
T ss_pred             cc--CchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE----e-------------------------------------
Confidence            31  1222223344455555666777777776544422    1                                     


Q ss_pred             CChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        160 VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       160 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                       -+...+++..-+...+.|.++.||+.++-+...+...-+.......+++.+..++.|+++.|-..|+.++..+.+.-+.
T Consensus       115 -v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  115 -VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             -ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence             1122344445567788999999999999888887654444444567889999999999999999999999998877653


Q ss_pred             hh---HHHhHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCccc-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14014        240 SD---VEQLVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN  314 (615)
Q Consensus       240 ~~---~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  314 (615)
                      ..   ....++..+.+.++. ..|. +   +..+..++...+++. ....++..+...+.+.++.|...+.+.+-.....
T Consensus       194 ~~~~~l~~~~~~~lL~al~ec~EW~-q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~  269 (734)
T KOG1061|consen  194 VNLLELNPQLINKLLEALNECTEWG-Q---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKY  269 (734)
T ss_pred             CCcccccHHHHHHHHHHHHHhhhhh-H---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence            21   111222222222322 3342 2   334455555555543 2346777778888899988888888888777765


Q ss_pred             ccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        315 LDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       315 ~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      +..  ....+...+-|.+..++..+. .+.-.++.-+..+...... .+...+ ..|.--..| --.|+..=++.+..++
T Consensus       270 ~~~--~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~-~~Ff~kynD-PiYvK~eKleil~~la  343 (734)
T KOG1061|consen  270 LKQ--VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEI-KVFFCKYND-PIYVKLEKLEILIELA  343 (734)
T ss_pred             HHH--HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHh-HeeeeecCC-chhhHHHHHHHHHHHh
Confidence            543  112233444444444444443 4444444444433322111 110000 001100111 1122222222222211


Q ss_pred             hhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHH
Q psy14014        395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT  474 (615)
Q Consensus       395 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  474 (615)
                      .   .....+      .+                  +.+.+...+.+...-..++.+++.++......   ..+++.+++
T Consensus       344 ~---~~nl~q------vl------------------~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLe  393 (734)
T KOG1061|consen  344 N---DANLAQ------VL------------------AELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLE  393 (734)
T ss_pred             h---HhHHHH------HH------------------HHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHH
Confidence            1   111111      01                  23333334455556667888888887655443   567888888


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhh
Q psy14014        475 WLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNM  553 (615)
Q Consensus       475 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  553 (615)
                      +++-...-+-..+...+..+.+.+....  +.+++.+-..... .+|..|.+.++.+|+-++.++..   ..++..+.+-
T Consensus       394 ll~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en  468 (734)
T KOG1061|consen  394 LLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLEN  468 (734)
T ss_pred             HHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhh
Confidence            8875555566677778888887765432  4566655443332 57788999999999988877643   3456666777


Q ss_pred             CCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc-CCCCccHHHHHHH
Q psy14014        554 AGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN-GDTDVDVKYFAQE  606 (615)
Q Consensus       554 ~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~-~d~d~~v~~~a~~  606 (615)
                      ..|....|+.....+.-++.-..++ .-.+.+..++..-. ..+++|+|..+..
T Consensus       469 ~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l~  521 (734)
T KOG1061|consen  469 FKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGLI  521 (734)
T ss_pred             cccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHHH
Confidence            7888888888777776665433332 33344444444444 3446688887653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.26  E-value=1.1e-09  Score=99.54  Aligned_cols=350  Identities=13%  Similarity=0.080  Sum_probs=225.5

Q ss_pred             hHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChhh---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC-
Q psy14014        203 LKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG-  277 (615)
Q Consensus       203 ~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~-  277 (615)
                      .....+|-|.+++. .+..-..-.|..++..+++......   .....+|.+.+++.+++..||..++.+||+++.-.. 
T Consensus       111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence            34567888888884 4445566677888888877665432   123478999999999999999999999999874211 


Q ss_pred             --ccchhhhHHHHHHHhhcCCcH--HHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy14014        278 --PEITKTDLVQAFQMLLKDSEA--EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG  353 (615)
Q Consensus       278 --~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~  353 (615)
                        +.......+..++.++...-+  .+-..+...|..++..-.+.... ......+|.|.+++...++.|-.-+++++..
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w-~~isqalpiL~KLiys~D~evlvDA~WAiSY  269 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW-SNISQALPILAKLIYSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence              111112234445555544443  45557888888888754332221 2356789999999999999999999999999


Q ss_pred             hchhhcc--hhhhh-hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhh
Q psy14014        354 LSPILGK--HNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA  430 (615)
Q Consensus       354 l~~~~g~--~~~~~-~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~  430 (615)
                      +......  +...+ -+.+.++++|.+++..|+.-|++..+.++...  +.-.+-+--+.++                  
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~--D~QTqviI~~G~L------------------  329 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS--DDQTQVIINCGAL------------------  329 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC--ccceehheecccH------------------
Confidence            8764322  11111 34577899999999999999999888775432  2211111000112                  


Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC--hHHh--
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG--SEWA--  503 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~--  503 (615)
                      +.+..+++++..++|..+|..+..+...-..   ......++|.+..++..-.+.+|+.|+.++........  ++..  
T Consensus       330 ~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iry  409 (526)
T COG5064         330 KAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRY  409 (526)
T ss_pred             HHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHH
Confidence            3455567788889999999999888542211   22446789999999998899999999999887765421  1211  


Q ss_pred             --hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh------------HH--HhhHHHHHhhCCCCCchHHHHHHH
Q psy14014        504 --QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV------------TA--NFLLPTVLNMAGDNVANVRFNVAK  567 (615)
Q Consensus       504 --~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~------------~~--~~i~~~l~~~~~D~~~~vr~~a~~  567 (615)
                        .+-++..|-+++.-.+-.+-+.++.|+..+.+....+.            +.  ...+..+..+.+..+..+-..|..
T Consensus       410 Lv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYs  489 (526)
T COG5064         410 LVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS  489 (526)
T ss_pred             HHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHH
Confidence              12244555555554444455666777777765422111            11  234555666666666667666665


Q ss_pred             HHHHHh
Q psy14014        568 TLQKIG  573 (615)
Q Consensus       568 ~l~~l~  573 (615)
                      .+..++
T Consensus       490 IIe~fF  495 (526)
T COG5064         490 IIEKFF  495 (526)
T ss_pred             HHHHHc
Confidence            555443

>KOG2259|consensus

Probab=99.22  E-value=1.5e-08  Score=100.16  Aligned_cols=134  Identities=15%  Similarity=0.145  Sum_probs=99.9

Q ss_pred             HHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014        433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV  512 (615)
Q Consensus       433 i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~  512 (615)
                      +...++|+-+.||.+++..+..++..-.  -|...-+.++.++++|+...||..|+.+|..|+..+.   ..+..++.++
T Consensus       378 ~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il  452 (823)
T KOG2259|consen  378 LVHGLEDEFYEVRRAAVASLCSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQIL  452 (823)
T ss_pred             eeeechHHHHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHH
Confidence            4456778889999999999999975332  2566678889999999999999999999999998743   4567899999


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHhhhChh---hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014        513 AMSRDQNYLHRMTCLFCINVLAEACGPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE  577 (615)
Q Consensus       513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~  577 (615)
                      ..+.|.+..+|.+.-..++.. ...+.+   .....++..|.++-+|.+.     ...+++.+.+..+
T Consensus       453 ~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~kyPqDrd~-----i~~cm~~iGqnH~  514 (823)
T KOG2259|consen  453 ESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLGKYPQDRDE-----ILRCMGRIGQNHR  514 (823)
T ss_pred             HHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhhCCCCcHH-----HHHHHHHHhccCh
Confidence            999999999999877666553 222222   2234566666666677554     6677777776543

>KOG1062|consensus

Probab=99.21  E-value=1.8e-07  Score=95.01  Aligned_cols=399  Identities=12%  Similarity=0.118  Sum_probs=225.1

Q ss_pred             hhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHH
Q psy14014        146 RTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLL  225 (615)
Q Consensus       146 r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~  225 (615)
                      +....-.++.+....++++...+.|.+.+++++.++.||+.|+.+...+....+.-  .+.+++.+.+++.|.+..|-.+
T Consensus       121 q~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL~ek~hGVL~~  198 (866)
T KOG1062|consen  121 QYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLLCEKHHGVLIA  198 (866)
T ss_pred             eeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHHhhcCCceeee
Confidence            33344455566666788999999999999999999999999999999998876653  5678888899999999999888


Q ss_pred             HHHHHHHHHhhcChh-----hHHHhHHHHHHHhcCC-----------CChHHHHHHHHHHHHHHHHhCccchhhhHHHHH
Q psy14014        226 AVEACVSIASLLSQS-----DVEQLVMPTLRQCSGD-----------TSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF  289 (615)
Q Consensus       226 a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d-----------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  289 (615)
                      ++..+..+++.-++.     .+.+.++-.+.++...           +++.....+...|.-++..-  ....+.+-.+|
T Consensus       199 ~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d--~daSd~M~DiL  276 (866)
T KOG1062|consen  199 GLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND--ADASDLMNDIL  276 (866)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC--ccHHHHHHHHH
Confidence            888888888765432     1222333334333221           22333333443333333210  00111111222


Q ss_pred             HHhhc-----------------------CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHH
Q psy14014        290 QMLLK-----------------------DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSA  346 (615)
Q Consensus       290 ~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~  346 (615)
                      -+...                       ++++..|..|+..|+.|+.                        +.+-.+|-.
T Consensus       277 aqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~------------------------n~d~NirYv  332 (866)
T KOG1062|consen  277 AQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLL------------------------NRDNNIRYV  332 (866)
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc------------------------CCccceeee
Confidence            22221                       2333444444444444433                        222233333


Q ss_pred             HHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhh
Q psy14014        347 LASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDE  426 (615)
Q Consensus       347 ~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~  426 (615)
                      ++..|..+.+.  .....+.--..+.++++|.+..+|..|++..-.++.......+.                       
T Consensus       333 aLn~L~r~V~~--d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv-----------------------  387 (866)
T KOG1062|consen  333 ALNMLLRVVQQ--DPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMV-----------------------  387 (866)
T ss_pred             ehhhHHhhhcC--CcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHH-----------------------
Confidence            33333322221  12233444567889999999999999998877665543322222                       


Q ss_pred             hhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH-hChH--
Q psy14014        427 KLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ-FGSE--  501 (615)
Q Consensus       427 ~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~-~~~~--  501 (615)
                          ..+.+++...+..+|...+..+..+++.|.+  .|+-+.++.. +....   .-||.-....+-.++.. +++.  
T Consensus       388 ----~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~V-l~~aG---~~V~~dv~~nll~LIa~~~~e~~~  459 (866)
T KOG1062|consen  388 ----KELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKV-LKTAG---DFVNDDVVNNLLRLIANAFQELHE  459 (866)
T ss_pred             ----HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH-HHhcc---cccchhhHHHHHHHHhcCCcchhh
Confidence                2333444444555677777777777777755  4544544432 22222   22344444444444332 2321  


Q ss_pred             HhhhchhHHHHh--hhcCCCchHHHHHHHHHHHHHhhh-Ch-------hhHHHhhHHHHHhhCC--CCCchHHHHHHHHH
Q psy14014        502 WAQSTVIPKVVA--MSRDQNYLHRMTCLFCINVLAEAC-GP-------TVTANFLLPTVLNMAG--DNVANVRFNVAKTL  569 (615)
Q Consensus       502 ~~~~~i~~~l~~--~~~d~~~~~R~~a~~~l~~l~~~~-~~-------~~~~~~i~~~l~~~~~--D~~~~vr~~a~~~l  569 (615)
                      .....+...+..  ...-.+...-+.+.||||+-+... ..       ..-.+.+...+.+++.  ..+..++..+..++
T Consensus       460 y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al  539 (866)
T KOG1062|consen  460 YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL  539 (866)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            111112222211  111123344677999999987432 11       1112445555655442  23478888899999


Q ss_pred             HHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHH
Q psy14014        570 QKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEA  607 (615)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a  607 (615)
                      -.+...+...  .+.+..++..+...-|.++++.|.+-
T Consensus       540 ~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~  575 (866)
T KOG1062|consen  540 LKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVEY  575 (866)
T ss_pred             HHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHHH
Confidence            8888766533  56678888888888888888888764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.21  E-value=9e-09  Score=101.80  Aligned_cols=184  Identities=27%  Similarity=0.342  Sum_probs=132.7

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHH
Q psy14014        168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM  247 (615)
Q Consensus       168 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  247 (615)
                      ..+.+.+++.|+++.+|..+...++.+.        ....+|.+..++.|+++.||..|..+++.+.        .+..+
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a~  107 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEAV  107 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhHH
Confidence            4455677888999999999999977764        3467899999999999999999999877653        33456


Q ss_pred             HHHHHhcC-CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc------------HHHHHHHHHHHHHHHhh
Q psy14014        248 PTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE------------AEVRAAAANKVRDFCQN  314 (615)
Q Consensus       248 ~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~~  314 (615)
                      |.+..+++ |+++.||..++..|+.+...        ..++.++..++|..            ..+|..++.+++.+.. 
T Consensus       108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-  178 (335)
T COG1413         108 PPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-  178 (335)
T ss_pred             HHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-
Confidence            66666665 89999999999999987642        33555566666654            2567777777765543 


Q ss_pred             ccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        315 LDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       315 ~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                                 +...+.+...+.|....||..++.+++.+....      ..+.+.+...+.++++.||..++..++.+
T Consensus       179 -----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         179 -----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEI  240 (335)
T ss_pred             -----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence                       345566777777777788888877777665422      23556677777777777777777766543

>KOG1020|consensus

Probab=99.17  E-value=4e-06  Score=91.12  Aligned_cols=500  Identities=15%  Similarity=0.132  Sum_probs=266.4

Q ss_pred             hHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (615)
Q Consensus        92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~  171 (615)
                      +..+...++.+...+|..|+.++..+.+.-+.-...+.+..-+.+-..|....+|.+|..++|.+...-+ +...++...
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~-e~~~qyY~~  896 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP-ELIFQYYDQ  896 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-HHHHHHHHH
Confidence            3344555677788999999999999988765433344444455555567778999999999997754433 333444455


Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh------hHHH-
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS------DVEQ-  244 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~-  244 (615)
                      +..-..|..-.||+.+++.+..+|...+.-....++.--++...+|++..|.+.+.+++..+ +..+..      .... 
T Consensus       897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl-WF~p~~~~~d~~~~~~k  975 (1692)
T KOG1020|consen  897 IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL-WFTPVPEVNDQPAKARK  975 (1692)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH-hccCCCcccccHHHHHh
Confidence            56666899999999999999999987766433445555556667899888999988888764 111110      0000 


Q ss_pred             --hHHHHHH---HhcCCCChHHHHHHHHHHH--HHHHHhCcc--chhhhHHHHHHHhh------------cCCcHHHHH-
Q psy14014        245 --LVMPTLR---QCSGDTSWRVRYMVADKFT--DLQKAVGPE--ITKTDLVQAFQMLL------------KDSEAEVRA-  302 (615)
Q Consensus       245 --~l~~~l~---~~~~d~~~~vR~~~~~~l~--~l~~~~~~~--~~~~~l~~~l~~~l------------~d~~~~vr~-  302 (615)
                        .....+.   .+..+.....=....+.-.  .......+-  ....+.+.++..++            .+++.++|. 
T Consensus       976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen  976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred             hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence              0111111   1112221111111110000  000000000  00112233333222            233344554 


Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCC
Q psy14014        303 AAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDEC  379 (615)
Q Consensus       303 ~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~  379 (615)
                      +.+..|..|+...+.-.. ..+...+.|||..-... ...++-...+..+..+...+..  +.+...+-..+.+.+-..+
T Consensus      1056 ~~lstL~~FskirP~Llt-~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g 1134 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLT-KKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMG 1134 (1692)
T ss_pred             HHHHHHHHHHhcCchhcc-HHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcc
Confidence            445556667665443221 13456677887654221 2234444444444444433321  2233333334444443334


Q ss_pred             hhHHHHHHHhhhHhhhhhchh-HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC----CchHHHHHHHHhHH
Q psy14014        380 PEVRLNIISNLDCVNEVIGIQ-QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS----KWRVRLAIIEYMPL  454 (615)
Q Consensus       380 ~~vr~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~----~~~vr~~~~~~l~~  454 (615)
                      -.+...|..+++.+....... .....+     ...+..         .+  +.+.....+.    +...-...+..++.
T Consensus      1135 ~a~V~~~vsCl~sl~~k~~~~~~~v~~c-----f~~~~k---------~l--e~~k~s~~en~~~~~~p~l~RsiftlG~ 1198 (1692)
T KOG1020|consen 1135 MATVVEAVSCLGSLATKRTDGAKVVKAC-----FSCYLK---------LL--EVIKSSNNENADIVNFPKLQRSIFTLGL 1198 (1692)
T ss_pred             hHHHHHHHHHHHHHHhhhccchHHHHHH-----HHHHHH---------HH--HHHHhccccccchhhhHHHHHHHHHHHH
Confidence            444555666666665432111 000000     100000         00  1111110011    22233345566666


Q ss_pred             HHhhh--------ChH------hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCC-C
Q psy14014        455 LAGQL--------GVE------FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQ-N  519 (615)
Q Consensus       455 l~~~~--------~~~------~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-~  519 (615)
                      ++..+        |+.      ...+.++-.++-+..+.+..+|..|+..||.++-.-..-+..+.+...+...+.+. +
T Consensus      1199 l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~ 1278 (1692)
T KOG1020|consen 1199 LSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNS 1278 (1692)
T ss_pred             HHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcc
Confidence            66643        222      34466666667777888899999999999999876443333445555555555544 3


Q ss_pred             chH-HHHHHHHHHHHHhh------------------------------hChh----hHHHhhHHHHHhhCCCCCchHHHH
Q psy14014        520 YLH-RMTCLFCINVLAEA------------------------------CGPT----VTANFLLPTVLNMAGDNVANVRFN  564 (615)
Q Consensus       520 ~~~-R~~a~~~l~~l~~~------------------------------~~~~----~~~~~i~~~l~~~~~D~~~~vr~~  564 (615)
                      +.. +.-+...+......                              .+..    .+.+..++.+...+=|.|..+|..
T Consensus      1279 ~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~ 1358 (1692)
T KOG1020|consen 1279 DIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLV 1358 (1692)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHH
Confidence            333 33333333322210                              0000    123456677777778899999999


Q ss_pred             HHHHHHHHhHhh-hhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        565 VAKTLQKIGPIL-ETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       565 a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      |.+.+.-+..+- -++   ....|.+..|-+|+.+..|..|-.-+..+.+
T Consensus      1359 aikvl~liL~QGLVhP---~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1359 AIKVLKLILNQGLVHP---VHCVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred             HHHHHHHHHHccCCCc---cchhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence            999998877531 111   2356777778899999999999888877653

>KOG1061|consensus

Probab=99.16  E-value=1.3e-08  Score=103.17  Aligned_cols=368  Identities=15%  Similarity=0.163  Sum_probs=228.2

Q ss_pred             CCCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCC
Q psy14014          6 SAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG   84 (615)
Q Consensus         6 ~~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~   84 (615)
                      +.+|.++..++.++...+++++.+|-.|++..+.+.    -++..+.+..-+...++|.++ ||+.++.+..++-..-.+
T Consensus        79 ~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~  154 (734)
T KOG1061|consen   79 GKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD  154 (734)
T ss_pred             cCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh
Confidence            567888889999999999999999999999988773    233555555555677788776 999999999887764333


Q ss_pred             cchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh-
Q psy14014         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-  163 (615)
Q Consensus        85 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-  163 (615)
                      -.+...+++.|..++.|+++.|-..|+.++..+.+.-+.........+++..+...-+.-.-..-+.++..+..+.+.. 
T Consensus       155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~  234 (734)
T KOG1061|consen  155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS  234 (734)
T ss_pred             hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence            3445678899999999999999999999999998876532211111122222111111111112223333333344322 


Q ss_pred             -hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-
Q psy14014        164 -VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-  239 (615)
Q Consensus       164 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-  239 (615)
                       ....+++.+...+++.+..|--.+.+.+....+....  +.....+-|.+..++..+. ++...++..+.-+....+. 
T Consensus       235 ~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~  313 (734)
T KOG1061|consen  235 REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEI  313 (734)
T ss_pred             hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHH
Confidence             2234555555555666666655556655555554433  1222233333333333222 4554444444443333221 


Q ss_pred             -------------------------------hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHH
Q psy14014        240 -------------------------------SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQA  288 (615)
Q Consensus       240 -------------------------------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  288 (615)
                                                     +.....++.-+.+...+-+...-+.++.++|.++......   +..++.
T Consensus       314 ~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~  390 (734)
T KOG1061|consen  314 LKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSI  390 (734)
T ss_pred             HHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHH
Confidence                                           1112234555566667777777777888888888765543   578888


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchhhcchhhhhhh
Q psy14014        289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPILGKHNTVDHL  367 (615)
Q Consensus       289 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g~~~~~~~l  367 (615)
                      |+.+++-...-|.+.++..+..+....++.      .+.+.+.+...+.. .++..|.+.+|.+++-++.+...   .++
T Consensus       391 lLell~~~~~yvvqE~~vvi~dilRkyP~~------~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~el  461 (734)
T KOG1061|consen  391 LLELLETKVDYVVQEAIVVIRDILRKYPNK------YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LEL  461 (734)
T ss_pred             HHHHHhhcccceeeehhHHHHhhhhcCCCc------hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHH
Confidence            888887666666677777777777766653      24455555444332 46788999999999887766542   356


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhh
Q psy14014        368 LPLFLSQLKDECPEVRLNIISNL  390 (615)
Q Consensus       368 ~p~l~~~l~d~~~~vr~~a~~~l  390 (615)
                      +..|.+-..|+...|+...+.+.
T Consensus       462 L~~f~en~~dE~~~Vql~LLta~  484 (734)
T KOG1061|consen  462 LESFLENFKDETAEVQLELLTAA  484 (734)
T ss_pred             HHHHHhhcccchHHHHHHHHHHH
Confidence            77777778887778877665543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.16  E-value=2e-08  Score=99.31  Aligned_cols=277  Identities=23%  Similarity=0.252  Sum_probs=185.3

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      ..+.+.+.+.|+++.+|..++..++.+..        ...+|.+...+.|.++.||..|+.+++.+..            
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------------  103 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD------------  103 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------------
Confidence            45566667777788888888877666542        4677888888888888888888887776543            


Q ss_pred             HhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCCh------------hHHHHHHHhhhH
Q psy14014        326 TYILPYVKDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECP------------EVRLNIISNLDC  392 (615)
Q Consensus       326 ~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~------------~vr~~a~~~l~~  392 (615)
                      +...|.+.+.+. |+++.||..++.+|+.+...        ..++.+...++++..            .+|..++..++.
T Consensus       104 ~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~  175 (335)
T COG1413         104 PEAVPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE  175 (335)
T ss_pred             hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence            334455555555 78888888888888766432        113445555555432            345555554443


Q ss_pred             hhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHH
Q psy14014        393 VNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALC  472 (615)
Q Consensus       393 l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  472 (615)
                      +.....             .                  +.+...+.+....+|..+...++.+....      ..+.+.+
T Consensus       176 ~~~~~~-------------~------------------~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l  218 (335)
T COG1413         176 LGDPEA-------------I------------------PLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLL  218 (335)
T ss_pred             cCChhh-------------h------------------HHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHH
Confidence            311000             1                  45667778888899999999998886422      2466778


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHh
Q psy14014        473 MTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN  552 (615)
Q Consensus       473 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  552 (615)
                      ...+.|+++.+|..++..++.+..        ....+.+...+.+.++.+|..+..+.+..-        .....+.+..
T Consensus       219 ~~~~~~~~~~vr~~~~~~l~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~  282 (335)
T COG1413         219 VKALSDESLEVRKAALLALGEIGD--------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLL  282 (335)
T ss_pred             HHHhcCCCHHHHHHHHHHhcccCc--------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHH
Confidence            888999999999999998877632        245677788888888888887777766211        1223445666


Q ss_pred             hCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        553 MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       553 ~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                      .+.|....+|..+..++..+....        ..........+.+..++..+..+...+
T Consensus       283 ~~~~~~~~~~~~~~~~l~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         283 LLIDEANAVRLEAALALGQIGQEK--------AVAALLLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             HhhcchhhHHHHHHHHHHhhcccc--------hHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence            778889999999999998876432        233333445777788888777766544

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.16  E-value=8.6e-07  Score=86.65  Aligned_cols=293  Identities=14%  Similarity=0.124  Sum_probs=180.5

Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh-CccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccch
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV-GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ  320 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  320 (615)
                      ....+.|.+...++|.-.-|-..++..+..++.-. +++ ..+..+..+..+++.+....|-+|++.|.+++...|..  
T Consensus       261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--  337 (898)
T COG5240         261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ-FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--  337 (898)
T ss_pred             HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--
Confidence            34557788888888877777777888777776433 433 24567777888899999999999999999988765432  


Q ss_pred             hHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014        321 ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       321 ~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  400 (615)
                          ....-+-+..+++|.+..+-.-|+-.|   .+ .|.+...+.++..+..++.|-++..+.-++.++..+...++.+
T Consensus       338 ----v~vcN~evEsLIsd~Nr~IstyAITtL---LK-TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k  409 (898)
T COG5240         338 ----VSVCNKEVESLISDENRTISTYAITTL---LK-TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK  409 (898)
T ss_pred             ----eeecChhHHHHhhcccccchHHHHHHH---HH-cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence                122334566677887765544443333   22 2545555556655656655544444444444444444444422


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcc
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV  480 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  480 (615)
                       |...   +.++                    ...+++...+..+..+++++..+.+..+.  ..+..+..+-.++.|-.
T Consensus       410 -~~s~---l~FL--------------------~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDce  463 (898)
T COG5240         410 -KLSY---LDFL--------------------GSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCE  463 (898)
T ss_pred             -HHHH---HHHH--------------------HHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcc
Confidence             2211   1111                    11223345666777777777777654432  12333444444555543


Q ss_pred             hHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCch
Q psy14014        481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVAN  560 (615)
Q Consensus       481 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~  560 (615)
                      +.  +-++..++.+.+.-.........+.++.+-+-=.|.-+|.+|+.|+..++-........+-+...+.++++|.|.+
T Consensus       464 y~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~Dde  541 (898)
T COG5240         464 YH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDE  541 (898)
T ss_pred             hh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHH
Confidence            32  3455666666554211111223445555544456778999999999999877666666677888899999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14014        561 VRFNVAKTLQKIG  573 (615)
Q Consensus       561 vr~~a~~~l~~l~  573 (615)
                      ||..|.-++..+-
T Consensus       542 VRdrAsf~l~~~~  554 (898)
T COG5240         542 VRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999888774

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.15  E-value=8.4e-07  Score=86.73  Aligned_cols=279  Identities=14%  Similarity=0.079  Sum_probs=181.4

Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh--
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ--  400 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--  400 (615)
                      ....++.|.|..-+.|.-..|.-.++.++..++...-...+.++.+..+..+|+......|..|++.+.++....+..  
T Consensus       260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~  339 (898)
T COG5240         260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS  339 (898)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence            345677888888888888888888888888876654233445566777778888877888999999988876543211  


Q ss_pred             ----HHHHHH-----HHHh-hhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHH
Q psy14014        401 ----QWRVRL-----AIIE-YMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNA  470 (615)
Q Consensus       401 ----~~~~~~-----~i~~-~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  470 (615)
                          ......     .|.. .+-.+.. .|-+.-.+.|. ..|..+.+|-....+.-+++++..++-.++.++  ..++.
T Consensus       340 vcN~evEsLIsd~Nr~IstyAITtLLK-TGt~e~idrLv-~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~  415 (898)
T COG5240         340 VCNKEVESLISDENRTISTYAITTLLK-TGTEETIDRLV-NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLD  415 (898)
T ss_pred             ecChhHHHHhhcccccchHHHHHHHHH-cCchhhHHHHH-HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHH
Confidence                000000     0000 0111111 12111112222 345566666555566678888888887777654  23444


Q ss_pred             HHHHh-cCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh----hhHHHh
Q psy14014        471 LCMTW-LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP----TVTANF  545 (615)
Q Consensus       471 ~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~----~~~~~~  545 (615)
                      .+... ++....+.+.+++.++..+.+....  ..+..+..|-.+.+|..+.  +.+++.++.+++..+.    ..+..+
T Consensus       416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrh  491 (898)
T COG5240         416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRH  491 (898)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHH
Confidence            44443 3455788999999999888876543  2355777777888887763  4466667777654332    222222


Q ss_pred             hHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        546 LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       546 i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      +..   ++ -=.+.-||.+|..+|..+.-...+....+.+..++++-++|+|.+||..|..+++.+..
T Consensus       492 IyN---R~-iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         492 IYN---RL-ILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHH---HH-HHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            222   22 22367899999999999887666677788999999999999999999999999987753

>KOG1991|consensus

Probab=99.15  E-value=1.2e-05  Score=84.10  Aligned_cols=512  Identities=14%  Similarity=0.124  Sum_probs=259.8

Q ss_pred             cchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCc-hhHHHHHHHHHHHHHH-hhcChhHHhhh
Q psy14014         52 ELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLIS-AQHSPHDLEAH  129 (615)
Q Consensus        52 ~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~-~~~~~~~~~~~  129 (615)
                      .++..+.+.+..+..+|++|-..|..+-+.   +.++..++.++   .+|+ +-.||++|+--+++.. +.++... .+ 
T Consensus         5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~---pgFv~~lLqIi---~~d~~~l~vrqaaaIYlKN~I~~~W~~~~-~~-   76 (1010)
T KOG1991|consen    5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQ---PGFVSSLLQII---MDDGVPLPVRQAAAIYLKNKITKSWSSHE-AP-   76 (1010)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcC---CcHHHHHHHHH---HccCCchhHHHHHHHHHHHHHHhcCCccC-CC-
Confidence            455555566655555888888777765542   33444443333   2343 3467888876666533 2232210 00 


Q ss_pred             HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHH
Q psy14014        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP  209 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~  209 (615)
                                           +    .-....++.+..+.+.+...+-....-+|-....++..+.+.-.+ ..|..+++
T Consensus        77 ---------------------g----~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d  130 (1010)
T KOG1991|consen   77 ---------------------G----RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLD  130 (1010)
T ss_pred             ---------------------C----CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHH
Confidence                                 0    011223344444444444444444566777777777666655444 34788888


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHhhcC-h------------hhHHHhHHHHHHHhcCCCChH---HHHHHHHHHHHHH
Q psy14014        210 MFVNLAQDEQDSVRLLAVEACVSIASLLS-Q------------SDVEQLVMPTLRQCSGDTSWR---VRYMVADKFTDLQ  273 (615)
Q Consensus       210 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~------------~~~~~~l~~~l~~~~~d~~~~---vR~~~~~~l~~l~  273 (615)
                      ....+++.++...-..|+-++..+++.-. +            +...|.+......++.+++.+   ..+..++.+-.++
T Consensus       131 ~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~  210 (1010)
T KOG1991|consen  131 KIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLI  210 (1010)
T ss_pred             HHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Confidence            88888888887777788888887776543 0            122334444455566666544   3333344333332


Q ss_pred             H-HhCccchhh----hHHHHHHHhhc-----------------CCcHHHHHHHHHHHHHHHhhccccch--------hHH
Q psy14014        274 K-AVGPEITKT----DLVQAFQMLLK-----------------DSEAEVRAAAANKVRDFCQNLDAYNQ--------ENI  323 (615)
Q Consensus       274 ~-~~~~~~~~~----~l~~~l~~~l~-----------------d~~~~vr~~a~~~l~~~~~~~~~~~~--------~~~  323 (615)
                      . .++......    ..+..+...++                 +.-+.+++.|+..+.++.+..+....        .+.
T Consensus       211 ~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~  290 (1010)
T KOG1991|consen  211 YYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQM  290 (1010)
T ss_pred             HHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence            2 122222212    12223333332                 12234788999999998887654321        112


Q ss_pred             HHHhhHHHHH----HhhC---CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhh----------cCC--------
Q psy14014        324 IMTYILPYVK----DLVA---DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL----------KDE--------  378 (615)
Q Consensus       324 ~~~~l~p~l~----~~~~---d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l----------~d~--------  378 (615)
                      +...+.+.+.    +.++   ..-|--=+...-++..+...+....+.+.+.|++.-++          +|+        
T Consensus       291 f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~D  370 (1010)
T KOG1991|consen  291 FLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEED  370 (1010)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcC
Confidence            2233333222    2221   11111111222233333333334444444555544322          221        


Q ss_pred             -ChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhh--------cCCchHHHHHH
Q psy14014        379 -CPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAE--------DSKWRVRLAII  449 (615)
Q Consensus       379 -~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~--------~~~~~vr~~~~  449 (615)
                       .+-+|.+.    . +   ++ +..+...+...++-.++.+-|.+.|...+  +-+.+.+.        ..+.+-+..++
T Consensus       371 P~EYiR~~~----D-i---~e-d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l--~F~~~Il~~~~~~~~~~~~~rqkdGAL  439 (1010)
T KOG1991|consen  371 PYEYIRKKF----D-I---FE-DGYSPDTAALDFLTTLVSKRGKETLPKIL--SFIVDILTRYKEASPPNKNPRQKDGAL  439 (1010)
T ss_pred             HHHHHHhcC----c-h---hc-ccCCCcHHHHHHHHHHHHhcchhhhhhHH--HHHHHHHHhhcccCCCccChhhhhhHH
Confidence             11233211    0 0   00 00001111112232333333333333322  22222222        35677888999


Q ss_pred             HHhHHHHhhhCh-----HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-HHhChHHhhhchhHHHHhhhc-CCCchH
Q psy14014        450 EYMPLLAGQLGV-----EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLV-EQFGSEWAQSTVIPKVVAMSR-DQNYLH  522 (615)
Q Consensus       450 ~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~-~~~~~~~~~~~i~~~l~~~~~-d~~~~~  522 (615)
                      ..++.++..+-+     ..+...+.+.++..++++.--+|..|+..++.++ ..++.......++....+.+. |++-.|
T Consensus       440 ~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV  519 (1010)
T KOG1991|consen  440 RMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPV  519 (1010)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCch
Confidence            999999976643     2234556788888899999999999999999998 455544344445555555554 899999


Q ss_pred             HHHHHHHHHHHHhhhChh--hHHHhhHH---HHHhhCCCCCchHHHHHHHHHHHHhHhhhh------hhHHhh-HHHHHh
Q psy14014        523 RMTCLFCINVLAEACGPT--VTANFLLP---TVLNMAGDNVANVRFNVAKTLQKIGPILET------NVIQSQ-VKPALD  590 (615)
Q Consensus       523 R~~a~~~l~~l~~~~~~~--~~~~~i~~---~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~------~~~~~~-~~~~l~  590 (615)
                      |..|+.|+..+.......  .+.+++-|   .+.++.++-+.+.--   .++..++..++.      ..+-+. ....++
T Consensus       520 ~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseElsPfA~eL~q~La~~F~k  596 (1010)
T KOG1991|consen  520 RVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELSPFAVELCQNLAETFLK  596 (1010)
T ss_pred             hhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence            999999999998776533  24444444   444455554443322   333333333321      111112 222222


Q ss_pred             hhc--CCCCccHHHHHHHHHHHH
Q psy14014        591 KLN--GDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       591 ~l~--~d~d~~v~~~a~~a~~~~  611 (615)
                      .+.  .|.++.+-..+..|+|.+
T Consensus       597 ~l~~~~~~~~~~ddk~iaA~GiL  619 (1010)
T KOG1991|consen  597 VLQTSEDEDESDDDKAIAASGIL  619 (1010)
T ss_pred             HHhccCCCCccchHHHHHHHHHH
Confidence            232  456666666666666543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.15  E-value=2.4e-09  Score=99.41  Aligned_cols=192  Identities=19%  Similarity=0.221  Sum_probs=126.1

Q ss_pred             HHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHH
Q psy14014        368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLA  447 (615)
Q Consensus       368 ~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~  447 (615)
                      .+.|.+.-.+.+|+.|..++..+..++...........  +.+.+..+            +  +.+...+.|.+..+-..
T Consensus         9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~--~~~~l~~~------------~--~~i~~~l~d~Rs~v~~~   72 (228)
T PF12348_consen    9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPD--FVECLRQL------------L--DAIIKQLSDLRSKVSKT   72 (228)
T ss_dssp             -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HH--HHHHHH-----------------HHHHH-S-HH---HHHH
T ss_pred             HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHH--HHHHHHHh------------H--HHHHHHHhhhHHHHHHH
Confidence            33343333556777777777777666543311111111  01111100            0  34556667777889999


Q ss_pred             HHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhch-hHHHHhhhcCCCchHHH
Q psy14014        448 IIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTV-IPKVVAMSRDQNYLHRM  524 (615)
Q Consensus       448 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i-~~~l~~~~~d~~~~~R~  524 (615)
                      ++..+..++..+|..+  +.+.++|.+++.+.|++..+|..|..++..++..++.   ...+ .+.+....+++++.+|.
T Consensus        73 A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~  149 (228)
T PF12348_consen   73 ACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVRE  149 (228)
T ss_dssp             HHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHH
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999998864  5578999999999999999999999999999998771   1234 67788889999999999


Q ss_pred             HHHHHHHHHHhhhC--hhh-----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh
Q psy14014        525 TCLFCINVLAEACG--PTV-----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET  578 (615)
Q Consensus       525 ~a~~~l~~l~~~~~--~~~-----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~  578 (615)
                      .++.++..+....+  ...     ..+.+.+.+.+++.|++++||..+-.++..+.+.++.
T Consensus       150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            99999999988877  222     2356889999999999999999999999999887763

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1059|consensus

Probab=99.11  E-value=1.6e-06  Score=87.23  Aligned_cols=219  Identities=16%  Similarity=0.163  Sum_probs=146.3

Q ss_pred             ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014        161 TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  240 (615)
Q Consensus       161 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  240 (615)
                      .+..-..+-+-+..++.+.-+.+|+.|+..+-.+.-..+..  ...-+|-+.+-+.|+++.|..+|+..+-.+++.-|..
T Consensus       138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence            44555566666777889999999999999888887666543  3456788888899999999999999999999887764


Q ss_pred             hHHHhHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh----
Q psy14014        241 DVEQLVMPTLRQCSG--DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN----  314 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----  314 (615)
                      -  -.+-|.+.+++.  +.+| +-...++.|+.+...=+.  ....++|.+..++..+.      |...+-+.+..    
T Consensus       216 y--L~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~------AmSLlYECvNTVVa~  284 (877)
T KOG1059|consen  216 Y--LQLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTV------AMSLLYECVNTVVAV  284 (877)
T ss_pred             c--ccccHHHHHHHhccCCCe-ehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhH------HHHHHHHHHHHheee
Confidence            2  125566666654  3456 444556666666543111  12367777777765443      22222222221    


Q ss_pred             -cccc-chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        315 -LDAY-NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       315 -~~~~-~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                       +... ..+.......+.-|..++.|.++..|--.+.+++.++..-.  ..++.-...++++|.|.++.+|..|+..+..
T Consensus       285 s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp--~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  285 SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP--KAVQAHKDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH--HHHHHhHHHHHHHhccCCchhHHHHHHHHHH
Confidence             1111 12223345556666778899999999988888888765422  2233446678999999999999999988765


Q ss_pred             hh
Q psy14014        393 VN  394 (615)
Q Consensus       393 l~  394 (615)
                      ++
T Consensus       363 mV  364 (877)
T KOG1059|consen  363 MV  364 (877)
T ss_pred             Hh
Confidence            54

>TIGR02270 conserved hypothetical protein

Probab=99.11  E-value=1.9e-08  Score=99.34  Aligned_cols=144  Identities=17%  Similarity=0.045  Sum_probs=67.2

Q ss_pred             HHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014        433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV  512 (615)
Q Consensus       433 i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~  512 (615)
                      +...++|+++.||..++.+++.+..        ....|.+...+.|.+..||.+|+.+++.+    |..    ...+.+.
T Consensus       152 L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~----~A~~~l~  215 (410)
T TIGR02270       152 LEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLA----GSR----LAWGVCR  215 (410)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHc----CCH----hHHHHHH
Confidence            3344555666666666666655532        12333344556666666666666665444    211    2233444


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014        513 AMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  592 (615)
Q Consensus       513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  592 (615)
                      .+..++....+..+...++..    +.    +..++.|..++.|+.  ||..++.+++.+..        +...+.+..+
T Consensus       216 ~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~  277 (410)
T TIGR02270       216 RFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEA  277 (410)
T ss_pred             HHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHH
Confidence            444444444444333333332    11    134455555555533  56666666665531        1122223333


Q ss_pred             cCCCCccHHHHHHHHHHHHh
Q psy14014        593 NGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       593 ~~d~d~~v~~~a~~a~~~~~  612 (615)
                      +.|..  +++.|-+|++.|.
T Consensus       278 l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       278 MREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             hcCcH--HHHHHHHHHHHhh
Confidence            23222  6666666666554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1243|consensus

Probab=99.10  E-value=7.2e-10  Score=111.03  Aligned_cols=272  Identities=16%  Similarity=0.180  Sum_probs=220.0

Q ss_pred             CCCCCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCC
Q psy14014          4 SDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPN   81 (615)
Q Consensus         4 ~~~~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~   81 (615)
                      .+|+..+-+..+..+|+.+...+...|....+.|.+....++.+.....++|.+...+.-.+  ..-....-.+++.   
T Consensus       245 ~~gff~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~---  321 (690)
T KOG1243|consen  245 LGGFFRNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKD---  321 (690)
T ss_pred             ccccccchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhh---
Confidence            46777788888999999999999999999999999988888888788889999876544222  2222222233332   


Q ss_pred             CCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCC
Q psy14014         82 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (615)
Q Consensus        82 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  161 (615)
                      +..++|...++|.+.++....+..+|..-++-+..+..+++++.+...+.|.                            
T Consensus       322 ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~ph----------------------------  373 (690)
T KOG1243|consen  322 LDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPH----------------------------  373 (690)
T ss_pred             ccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHH----------------------------
Confidence            2345688889999999999999999999999888888888876665555444                            


Q ss_pred             hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh
Q psy14014        162 AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  241 (615)
Q Consensus       162 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  241 (615)
                                +...+.|.++-+|...+.++..++..++......+++-.|-.+..|+...+|....-+++.++.++....
T Consensus       374 ----------v~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~  443 (690)
T KOG1243|consen  374 ----------VALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV  443 (690)
T ss_pred             ----------HHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh
Confidence                      4677789999999999999999999888887778899999888889999999999999999999887766


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      ....+.-.+...+.|+-..-|.+....+......+.......+++|.+.-+.-|++..||..|.+++..+...+.
T Consensus       444 R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  444 RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence            555555666677889988899999988888888777766677899999999999999999999999998887654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.08  E-value=1.4e-08  Score=94.38  Aligned_cols=197  Identities=22%  Similarity=0.243  Sum_probs=133.3

Q ss_pred             hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHH
Q psy14014         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (615)
Q Consensus        89 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l  168 (615)
                      +.+...|..--.+.+...|..++..+..++....+....+.+.+.+                               ..+
T Consensus         6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l-------------------------------~~~   54 (228)
T PF12348_consen    6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECL-------------------------------RQL   54 (228)
T ss_dssp             GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHH-------------------------------H--
T ss_pred             HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHH-------------------------------HHh
Confidence            3445555554567788999999999998877662222222222222                               122


Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhH
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV  246 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  246 (615)
                      ...+...+.|....|-+.++.++..++...+..  .+...++|.+...+.|....+|..|..++..+++..+..  ...+
T Consensus        55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--~~~~  132 (228)
T PF12348_consen   55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--PKIL  132 (228)
T ss_dssp             -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--HHHH
Confidence            344556667777788999999999999988774  356779999999999999999999999999999988711  1224


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccch----hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEIT----KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                      .+.+....++.++.+|..++..+..+....+   ....    .+.+.+.+..++.|.+++||.+|-.++..+...++..
T Consensus       133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            7888889999999999999999999888777   2221    2568899999999999999999999999998876643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1020|consensus

Probab=99.07  E-value=2.3e-05  Score=85.45  Aligned_cols=562  Identities=14%  Similarity=0.115  Sum_probs=279.7

Q ss_pred             cch-HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhh
Q psy14014         12 LYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVH   89 (615)
Q Consensus        12 ~~~-i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~   89 (615)
                      +.+ ++.++..+..+-+..|..|+++|+.++..=+.--..+.+..-+..-+.|+. .||.+|...+|+++-  ..++...
T Consensus       814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl--~~~e~~~  891 (1692)
T KOG1020|consen  814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL--SIPELIF  891 (1692)
T ss_pred             hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--ccHHHHH
Confidence            444 455556677888889999999999997632221234445445555555665 599999999999874  2455666


Q ss_pred             hchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCC-Ch------
Q psy14014         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV-TA------  162 (615)
Q Consensus        90 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~-~~------  162 (615)
                      .....+..-+.|+.-.||..++..++.++..-++=.....+.-.+.+-.+|+...++..+...+-.+|=.- ++      
T Consensus       892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~  971 (1692)
T KOG1020|consen  892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPA  971 (1692)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHH
Confidence            66666777778999999999999999999887642222222222223333333333333333332222000 00      


Q ss_pred             ------------------------hh------------------------HHHHHHHHHH------------HhCCCChH
Q psy14014        163 ------------------------GV------------------------KAELRSHFRN------------LCQDDTPM  182 (615)
Q Consensus       163 ------------------------~~------------------------~~~l~~~l~~------------l~~d~~~~  182 (615)
                                              +.                        ....++++..            ...+++.+
T Consensus       972 ~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~ 1051 (1692)
T KOG1020|consen  972 KARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESE 1051 (1692)
T ss_pred             HHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccch
Confidence                                    00                        0001111100            00112223


Q ss_pred             HHHHH-HHhHHHHHHHhchh---hhHhhhHHHHHHhhcc-CchhHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHhcC
Q psy14014        183 VRRAA-AGKLGELAKVVEVD---YLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSG  255 (615)
Q Consensus       183 vR~~a-~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~  255 (615)
                      +|..+ +..|..+++..+.-   .+...+.|++..-+.. +...+-...+..+....+....  +.+...+-..|...+-
T Consensus      1052 ~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~ 1131 (1692)
T KOG1020|consen 1052 VRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIV 1131 (1692)
T ss_pred             hHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence            33332 22333333332221   1122233333332111 1223333334444433333321  2222223333333222


Q ss_pred             CCChHHHHHHHHHHHHHHHHhCccch-hhhHHHHHHHhhc-------CC----cHHHHHHHHHHHHHHHhhcccc-----
Q psy14014        256 DTSWRVRYMVADKFTDLQKAVGPEIT-KTDLVQAFQMLLK-------DS----EAEVRAAAANKVRDFCQNLDAY-----  318 (615)
Q Consensus       256 d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~-------d~----~~~vr~~a~~~l~~~~~~~~~~-----  318 (615)
                      -.+...-..+.-|++.++........ ...+...+.+.+.       +.    +...-...+..+|.++.++.-.     
T Consensus      1132 k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~ 1211 (1692)
T KOG1020|consen 1132 KMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSND 1211 (1692)
T ss_pred             hcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCC
Confidence            22222333344455555554332221 1122222322221       11    1122234567777777754211     


Q ss_pred             c-----hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhH--HHHHHHhhh
Q psy14014        319 N-----QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEV--RLNIISNLD  391 (615)
Q Consensus       319 ~-----~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~v--r~~a~~~l~  391 (615)
                      .     ......+.++..|.-...+.+-.+|..++.+++.++-.-..-....++...+.+.+.+.+.++  +..+++.+.
T Consensus      1212 g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~ 1291 (1692)
T KOG1020|consen 1212 GKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLE 1291 (1692)
T ss_pred             CccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence            0     012345556666666667777899999999999887544433445567777888887755443  334443333


Q ss_pred             HhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHh---hhChH----hH
Q psy14014        392 CVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAG---QLGVE----FF  464 (615)
Q Consensus       392 ~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~---~~~~~----~~  464 (615)
                      .+...   ++  +.+                             ..++.+|.- ..-.+.+..+..   ..|..    -.
T Consensus      1292 ~yL~e---ee--~~l-----------------------------~~~~~~w~~-~~k~edlkem~~v~sg~~s~~~~~~i 1336 (1692)
T KOG1020|consen 1292 LYLLE---EE--KKL-----------------------------RNKGKNWTK-SNKSEDLKEMLDVSSGMGSSDGVSAI 1336 (1692)
T ss_pred             HHHHH---HH--HHH-----------------------------Hhcccchhh-hhhHHHHHhhcccccccccccchHHH
Confidence            22110   00  000                             011222211 111111111111   11111    12


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH--
Q psy14014        465 DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT--  542 (615)
Q Consensus       465 ~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~--  542 (615)
                      .+.+++.+++..-|.+..+|..|+..+..+.+. |-- ....-+|+++.+..|+....|..|-..+..+-+.+..=++  
T Consensus      1337 ~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~Q-GLV-hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk 1414 (1692)
T KOG1020|consen 1337 MQLFLDNILESCLDRDLQVRLVAIKVLKLILNQ-GLV-HPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSK 1414 (1692)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc-cCC-CccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344566667777788999999999999888764 421 1134789999999999999999999989888776432111  


Q ss_pred             ------HHhhH-HHHHhhCCCCCchHH--HHHHHHHH-HHhHhh-hhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        543 ------ANFLL-PTVLNMAGDNVANVR--FNVAKTLQ-KIGPIL-ETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       543 ------~~~i~-~~l~~~~~D~~~~vr--~~a~~~l~-~l~~~~-~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                            ..+.+ ..+.....+++...|  ..++.++. .+.+.. ++...-+.+.+-+.++..|++..+-.........+
T Consensus      1415 ~~~G~~lsf~lq~~~~~~~~~~~~~fr~~d~ss~tl~s~ly~~~r~nk~~rr~fl~si~~lfd~~~ks~vs~~~yiadnL 1494 (1692)
T KOG1020|consen 1415 LSQGVQLSFKLQQHIDEKTYKPVRGFRLPDHSSSTLKSNLYKSIRGNKQIRRSFLQSILDLFDDPNKSVVSFLLYIADNL 1494 (1692)
T ss_pred             HHhhhHHHHHHHHHHHHHhhcccccccCcccchhHHHhccHHHHhhhHHHHHHHHHHHHHhccCCCcchhhhHHHHHhhh
Confidence                  11111 222222335666666  23333332 222222 23445566777777776775666655555544444


Q ss_pred             h
Q psy14014        612 A  612 (615)
Q Consensus       612 ~  612 (615)
                      |
T Consensus      1495 A 1495 (1692)
T KOG1020|consen 1495 A 1495 (1692)
T ss_pred             c
Confidence            3

>KOG1062|consensus

Probab=99.06  E-value=4.3e-06  Score=85.33  Aligned_cols=401  Identities=14%  Similarity=0.124  Sum_probs=216.5

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHH
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP  248 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  248 (615)
                      .+.+.+=+++.+..|--.|+-++|.+   .++| ...++.|-+.++++..++.||+-|+.|...+....|+-  .+.+++
T Consensus       109 tNslknDL~s~nq~vVglAL~alg~i---~s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~  182 (866)
T KOG1062|consen  109 TNSLKNDLNSSNQYVVGLALCALGNI---CSPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVI  182 (866)
T ss_pred             HHHHHhhccCCCeeehHHHHHHhhcc---CCHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhH
Confidence            34445555556655544444444444   4444 35679999999999999999999999999998887753  556777


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCccc-hhhhHHHHHHHhhcC---------------CcHHHHHHHHHHHHHHH
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQMLLKD---------------SEAEVRAAAANKVRDFC  312 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~~~  312 (615)
                      ...+++.+.+..|-.+....+..++..-.... ....+.+-|...+++               ++|.++...++.|.-+.
T Consensus       183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence            78888888888887777777766665422111 112344444443321               23444444555554444


Q ss_pred             hhccccchhHHHHHhhHHHHHHhhC--CCCHHHHH-HHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHh
Q psy14014        313 QNLDAYNQENIIMTYILPYVKDLVA--DPNQHVKS-ALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN  389 (615)
Q Consensus       313 ~~~~~~~~~~~~~~~l~p~l~~~~~--d~~~~vR~-~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~  389 (615)
                      +.-...      .+.+-..|.+...  |.+..+=. ...+++..+...........--+..+-+++..++.++|.-++..
T Consensus       263 q~d~da------Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~  336 (866)
T KOG1062|consen  263 QNDADA------SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM  336 (866)
T ss_pred             CCCccH------HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence            321110      1111111111111  11111100 00111111111111111111112233344444445555555555


Q ss_pred             hhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHH
Q psy14014        390 LDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN  469 (615)
Q Consensus       390 l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  469 (615)
                      |..++..-.. ..+++-                        ..+.+.++|++..+|..+++..-.+...-.-..    ++
T Consensus       337 L~r~V~~d~~-avqrHr------------------------~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~----mv  387 (866)
T KOG1062|consen  337 LLRVVQQDPT-AVQRHR------------------------STILECLKDPDVSIKRRALELSYALVNESNVRV----MV  387 (866)
T ss_pred             HHhhhcCCcH-HHHHHH------------------------HHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----HH
Confidence            4444332221 111111                        467788899999999999999888866444333    44


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh-Chhh---HHHh
Q psy14014        470 ALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC-GPTV---TANF  545 (615)
Q Consensus       470 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~-~~~~---~~~~  545 (615)
                      .-++.+|...+...|.....-+..+++.|.++  ..+.++++...+...-..+|..+...+-.+.... ++..   +...
T Consensus       388 ~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~--k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rL  465 (866)
T KOG1062|consen  388 KELLEFLESSDEDFKADIASKIAELAEKFAPD--KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRL  465 (866)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHH
Confidence            45556665567778888888999999999875  2345666777666655556666666555554332 3221   1111


Q ss_pred             hHHHHHh-hCCCCCchHHHHHHHHHHHHhHhhhh--------hhHHhhHHHHHhhh--cCCCCccHHHHHHHHHHHHh
Q psy14014        546 LLPTVLN-MAGDNVANVRFNVAKTLQKIGPILET--------NVIQSQVKPALDKL--NGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       546 i~~~l~~-~~~D~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~l--~~d~d~~v~~~a~~a~~~~~  612 (615)
                      ....... ++.-..+...+-+.++++.....+=+        ..-.+.+...+.++  ....+..++.+|..|+-.+.
T Consensus       466 y~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS  543 (866)
T KOG1062|consen  466 YLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS  543 (866)
T ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            1111111 12223445567788999887633211        12234455555554  24446899999998886653

>KOG1991|consensus

Probab=99.05  E-value=3e-05  Score=81.35  Aligned_cols=431  Identities=16%  Similarity=0.172  Sum_probs=216.4

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhh-cCCcH--HHHHHHHHHhccccC-CCCCcchhh
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET-IYDED--EVLLALAEQLGTFTP-NVGGPEYVH   89 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~-~~~~~--~vr~~a~~~l~~l~~-~~~~~~~~~   89 (615)
                      .+...+.+--++|+++|..|.+.|..+-+.      . ..++.+.+. .+++.  +||++++.-+.+.+. .....+ .+
T Consensus         5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~------p-gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~-~~   76 (1010)
T KOG1991|consen    5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQ------P-GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE-AP   76 (1010)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcC------C-cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC-CC
Confidence            444555554466799999999999988542      2 233344443 34443  489999988876542 222111 00


Q ss_pred             hchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHH
Q psy14014         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR  169 (615)
Q Consensus        90 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~  169 (615)
                      . .|  ...-.++...+|+.-++++...     ++.++..+.-.+......+                   -+..+..++
T Consensus        77 g-~~--~~I~e~dk~~irenIl~~iv~~-----p~~iRvql~~~l~~Ii~~D-------------------~p~~Wp~l~  129 (1010)
T KOG1991|consen   77 G-RP--FGIPEEDKAVIRENILETIVQV-----PELIRVQLTACLNTIIKAD-------------------YPEQWPGLL  129 (1010)
T ss_pred             C-Cc--CCCChHHHHHHHHHHHHHHHhC-----chHHHHHHHHHHHHHHhcC-------------------CcccchhHH
Confidence            0 00  0011233456666666655443     2333333333322222221                   113345566


Q ss_pred             HHHHHHhCCCChHHHHHHHHhHHHHHHHhch-------------hhhHhhhHHHHHHhhccCchh---HHHHHHHHHHHH
Q psy14014        170 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-------------DYLKTDIIPMFVNLAQDEQDS---VRLLAVEACVSI  233 (615)
Q Consensus       170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------~~~~~~ll~~l~~~~~d~~~~---vr~~a~~~l~~l  233 (615)
                      +....+++..+...-..++-++..+++....             +...+.++..+..++.+++..   ..+..++.+..+
T Consensus       130 d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~  209 (1010)
T KOG1991|consen  130 DKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSL  209 (1010)
T ss_pred             HHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence            6667777777766666777777777765431             011223444444455555433   233333333333


Q ss_pred             Hhh-cChh----hHHHhHHHHHHHhc-----------------CCCChHHHHHHHHHHHHHHHHhCccch----hh----
Q psy14014        234 ASL-LSQS----DVEQLVMPTLRQCS-----------------GDTSWRVRYMVADKFTDLQKAVGPEIT----KT----  283 (615)
Q Consensus       234 ~~~-~~~~----~~~~~l~~~l~~~~-----------------~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~----  283 (615)
                      +-+ +|..    ......+.++...+                 +++-|++++-++..+.++..-+|+.-.    ..    
T Consensus       210 ~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~  289 (1010)
T KOG1991|consen  210 IYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQ  289 (1010)
T ss_pred             HHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHH
Confidence            222 2221    11111222222221                 234588999999999999887775321    11    


Q ss_pred             --------hHHHHHHHhhc---C---CcHHHHHHHHHHHHHHHhhcccc-----chhHHHHHhhHHHHHH------h-hC
Q psy14014        284 --------DLVQAFQMLLK---D---SEAEVRAAAANKVRDFCQNLDAY-----NQENIIMTYILPYVKD------L-VA  337 (615)
Q Consensus       284 --------~l~~~l~~~l~---d---~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~l~p~l~~------~-~~  337 (615)
                              .++..+.+.+.   .   -.+.|-..++..+......-..-     .....+.+-++|.+.-      + -+
T Consensus       290 ~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~  369 (1010)
T KOG1991|consen  290 MFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE  369 (1010)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc
Confidence                    12222222211   0   11222222222222211110000     0000112223333321      1 14


Q ss_pred             CCCHHHHH-------------HHHHHHHhhchhhcchhhhhhhHHHHHHhhc------CC--ChhHHHHHHHhhhHhhhh
Q psy14014        338 DPNQHVKS-------------ALASVIMGLSPILGKHNTVDHLLPLFLSQLK------DE--CPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       338 d~~~~vR~-------------~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~------d~--~~~vr~~a~~~l~~l~~~  396 (615)
                      |+...+|+             ++...+..++...|++.+ +.+++.+...++      .+  ++.-+.+|+..++.+...
T Consensus       370 DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~  448 (1010)
T KOG1991|consen  370 DPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASI  448 (1010)
T ss_pred             CHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHH
Confidence            56667763             556666777766666543 445555555554      22  345567899988888755


Q ss_pred             hchhH-HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHH-hhhChHhHHHHHHHHHHH
Q psy14014        397 IGIQQ-WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLA-GQLGVEFFDEKLNALCMT  474 (615)
Q Consensus       397 ~~~~~-~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~-~~~~~~~~~~~l~~~l~~  474 (615)
                      +..+. +...+   +++               +. +.+.-..+++.--.|..+|..++.++ ..+.........+....+
T Consensus       449 L~K~s~~~~~m---E~f---------------lv-~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~  509 (1010)
T KOG1991|consen  449 LLKKSPYKSQM---EYF---------------LV-NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHN  509 (1010)
T ss_pred             HccCCchHHHH---HHH---------------HH-HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence            43221 11111   111               00 23333456666678999999999988 344443334455666666


Q ss_pred             hcC-CcchHHHHHHHHHHHHHHHHhC
Q psy14014        475 WLV-DHVYAIREAATLNLKKLVEQFG  499 (615)
Q Consensus       475 ~l~-d~~~~vR~~a~~~l~~l~~~~~  499 (615)
                      .+. |+.-+||..|+-++..+.....
T Consensus       510 ~l~~d~~lPV~VeAalALq~fI~~~~  535 (1010)
T KOG1991|consen  510 CLLNDNELPVRVEAALALQSFISNQE  535 (1010)
T ss_pred             HhccCCcCchhhHHHHHHHHHHhcch
Confidence            665 8999999999999999988764

>KOG1248|consensus

Probab=99.04  E-value=6.3e-05  Score=80.61  Aligned_cols=569  Identities=13%  Similarity=0.095  Sum_probs=305.4

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHHHHhCcc---hhhccchhhhhhhcCCcHHH---------HHHHHHHhccccCCCCC
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDEDEV---------LLALAEQLGTFTPNVGG   84 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~v---------r~~a~~~l~~l~~~~~~   84 (615)
                      .+|.-+...+..++..+++.+..+....++.   ...-.++-.+.++--+.+.+         -..+-.++...-... .
T Consensus       228 ~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~-~  306 (1176)
T KOG1248|consen  228 VLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEK-A  306 (1176)
T ss_pred             HHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHH-H
Confidence            4455566677778888999988887655442   12223333333332222211         122222222211110 0


Q ss_pred             cchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHH-HHHhhcCCCcchhhhHHhhhhhhccCCChh
Q psy14014         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL-VQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (615)
Q Consensus        85 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~-l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  163 (615)
                      -...+.+++++..+.....+++-+.+-+++..+.+....  ..+.+... +..+..-....+=..+..++..+++.+++.
T Consensus       307 ~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~--~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~  384 (1176)
T KOG1248|consen  307 LQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT--VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGEL  384 (1176)
T ss_pred             HHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhh
Confidence            123455677777777788888889999998888776554  11111111 111111111122234456666666666554


Q ss_pred             hHHHHHHHHHHHh---CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014        164 VKAELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  240 (615)
Q Consensus       164 ~~~~l~~~l~~l~---~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  240 (615)
                      .-.++.+.+..++   .+++..-+...=+++|.-....|++.... ++|+=.  -.+.....|..-+-.|..-....+-.
T Consensus       385 s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La  461 (1176)
T KOG1248|consen  385 SGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL--HAESLSFTRSWLLPVLRDYIIGASLA  461 (1176)
T ss_pred             cCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc--cccccccchhHhHHHHHHhhccCcHH
Confidence            4444444444333   34555566677778888888888865332 333322  33344445554444444433333444


Q ss_pred             hHHHhHHHHHHHh------cCCCChH--HHHHHHHHHHHHHHHhCccch-----hhhHHHHHHHhhcCCcHHHHHHHHHH
Q psy14014        241 DVEQLVMPTLRQC------SGDTSWR--VRYMVADKFTDLQKAVGPEIT-----KTDLVQAFQMLLKDSEAEVRAAAANK  307 (615)
Q Consensus       241 ~~~~~l~~~l~~~------~~d~~~~--vR~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~  307 (615)
                      .+..+++|+..++      +.+..-.  +=.++...|..+...|.....     -..+.|.+...+.... +.|...+.+
T Consensus       462 ~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~s  540 (1176)
T KOG1248|consen  462 FFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNS  540 (1176)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHH
Confidence            5566677765443      2222211  223333334444444433221     2245566666555444 888888888


Q ss_pred             HHHHHhhccccc----hh---HHHHHhhHHHHHHhhCC------CCHHHHHHHHHHHH-hhchhhcch------------
Q psy14014        308 VRDFCQNLDAYN----QE---NIIMTYILPYVKDLVAD------PNQHVKSALASVIM-GLSPILGKH------------  361 (615)
Q Consensus       308 l~~~~~~~~~~~----~~---~~~~~~l~p~l~~~~~d------~~~~vR~~~~~~l~-~l~~~~g~~------------  361 (615)
                      |..++..-.+..    ..   ..+-..++|.+.++-..      .....|...+..+. ...+..+.+            
T Consensus       541 L~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~  620 (1176)
T KOG1248|consen  541 LRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGEL  620 (1176)
T ss_pred             HHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhH
Confidence            888777531111    00   11223445554443221      22334444333332 111111000            


Q ss_pred             ------hh----hhhhHHHHH------------------H-hhcCCChhHHHHHHHhhhHhhhhhchhH-HHHHHHHHhh
Q psy14014        362 ------NT----VDHLLPLFL------------------S-QLKDECPEVRLNIISNLDCVNEVIGIQQ-WRVRLAIIEY  411 (615)
Q Consensus       362 ------~~----~~~l~p~l~------------------~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~i~~~  411 (615)
                            ..    .-.++..+.                  + .-+..+..+|..+.+.|..+......+. ..+++     
T Consensus       621 as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i-----  695 (1176)
T KOG1248|consen  621 ASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRI-----  695 (1176)
T ss_pred             hccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHH-----
Confidence                  00    000111111                  1 1112244566666666555544311111 11111     


Q ss_pred             hhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcchHHHHHHHH
Q psy14014        412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVYAIREAATL  489 (615)
Q Consensus       412 l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vR~~a~~  489 (615)
                                    +.+. ..+.+..++.....|...+.++..+.+.++.++  +....+|-++=.+++.+..-|..|..
T Consensus       696 --------------~~I~-n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~  760 (1176)
T KOG1248|consen  696 --------------DDIF-NSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFA  760 (1176)
T ss_pred             --------------HHHH-HHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHH
Confidence                          0111 244455566677789999999999999888543  22444554444458888899999999


Q ss_pred             HHHHHH--HHh---ChHH---hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---ChhhHHHhhHHHHHhhCCCCC
Q psy14014        490 NLKKLV--EQF---GSEW---AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GPTVTANFLLPTVLNMAGDNV  558 (615)
Q Consensus       490 ~l~~l~--~~~---~~~~---~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~D~~  558 (615)
                      +|..+.  ..+   |.+.   ..+.+++.+...+......++...+-+++.+....   ..+.+.+.++..+.-++....
T Consensus       761 lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~s  840 (1176)
T KOG1248|consen  761 LLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNS  840 (1176)
T ss_pred             HHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCC
Confidence            998888  322   3322   33456666666666666666666677777776543   334567788888888999999


Q ss_pred             chHHHHHHHHHHHHhHhhhhhhHH---hhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        559 ANVRFNVAKTLQKIGPILETNVIQ---SQVKPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       559 ~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                      +.++..|+..+..++..++.....   +.+.|.+-.+.+|....+|-....-++.+-
T Consensus       841 reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  841 REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            999999999999999888755443   334555555678888889888888777664

>KOG2259|consensus

Probab=99.02  E-value=4.8e-08  Score=96.72  Aligned_cols=216  Identities=19%  Similarity=0.176  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-----
Q psy14014        165 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-----  239 (615)
Q Consensus       165 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-----  239 (615)
                      .+.+..-+..++.|.+++||..|++++-.+.+.+.   ....+.....+.++|++..||.+|++.+...+...+.     
T Consensus       196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            44455557788899999999999999888877321   1234566667888999999999999998877776631     


Q ss_pred             ---hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--------ccc----------------------------
Q psy14014        240 ---SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG--------PEI----------------------------  280 (615)
Q Consensus       240 ---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~--------~~~----------------------------  280 (615)
                         .......+..++....|-+|.||-.+++.||.+-....        ++.                            
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence               23344567778888999999999999999987654210        000                            


Q ss_pred             -----------------hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHH
Q psy14014        281 -----------------TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHV  343 (615)
Q Consensus       281 -----------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~v  343 (615)
                                       ........|+..++|+.-+||.+|..++..++..-+.      +-...+.+|.++++|+...|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~------FA~~aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG------FAVRALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHhccHHHHH
Confidence                             0001134566778899999999999999998875443      34567889999999999999


Q ss_pred             HHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        344 KSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       344 R~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                      |..++.++..++..+.   +.+..++.+...+.|.+.+||.++-..|+.
T Consensus       427 RL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  427 RLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            9999999998877632   234568899999999999999988776654

>TIGR02270 conserved hypothetical protein

Probab=99.02  E-value=7.2e-08  Score=95.30  Aligned_cols=150  Identities=14%  Similarity=0.047  Sum_probs=76.6

Q ss_pred             hhhHHHHHHhh-ccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhh
Q psy14014        205 TDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKT  283 (615)
Q Consensus       205 ~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  283 (615)
                      ...++.+...+ .|++.+++..+..++...        ..+..+..+...+.|++..||..++++|+.+.        ..
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~  116 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQ--------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GR  116 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------ch
Confidence            44555555555 355555555444443221        12233555566666666666666666665432        23


Q ss_pred             hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh
Q psy14014        284 DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT  363 (615)
Q Consensus       284 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~  363 (615)
                      ...+.+..++++.++.||..++.+++....             .-.+.+...++|+++.||..++.+++.+...      
T Consensus       117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------  177 (410)
T TIGR02270       117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-------------DPGPALEAALTHEDALVRAAALRALGELPRR------  177 (410)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence            455555566666666666655555543111             1123444455566666666666666554321      


Q ss_pred             hhhhHHHHHHhhcCCChhHHHHHHHhhh
Q psy14014        364 VDHLLPLFLSQLKDECPEVRLNIISNLD  391 (615)
Q Consensus       364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~  391 (615)
                        ...|.+...+.|.++.||..|+.++.
T Consensus       178 --~a~~~L~~al~d~~~~VR~aA~~al~  203 (410)
T TIGR02270       178 --LSESTLRLYLRDSDPEVRFAALEAGL  203 (410)
T ss_pred             --cchHHHHHHHcCCCHHHHHHHHHHHH
Confidence              23444455555556666666655554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1248|consensus

Probab=99.02  E-value=2.5e-05  Score=83.48  Aligned_cols=484  Identities=17%  Similarity=0.125  Sum_probs=278.0

Q ss_pred             HHHhcHHHHHHHhCcchhhccchhhhhhhcC---CcH-HHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHH
Q psy14014         32 NSIKKLSTIALALGQERTRGELIPFLTETIY---DED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR  107 (615)
Q Consensus        32 ~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~---~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr  107 (615)
                      .+++.++.+...+|+- ..+++.|-|..+..   +++ .-+..+-+++|..+..+| |+.+=.++|+=.  ..+.....|
T Consensus       369 ~ilqi~s~~fek~G~~-s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLnl--~~~s~~~~R  444 (1176)
T KOG1248|consen  369 FILQILSALFEKCGEL-SGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLNL--HAESLSFTR  444 (1176)
T ss_pred             HHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchhc--cccccccch
Confidence            4566667776777763 55666666654322   222 244466666666665554 333333343311  233334444


Q ss_pred             HHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcC------CCcch---hhhHH---hhhhhhccCCC--hhhHHHHHHHHH
Q psy14014        108 DKAVESLRLISAQHSPHDLEAHFVPLVQRLASG------DWFTS---RTSAC---GLFSVCYPRVT--AGVKAELRSHFR  173 (615)
Q Consensus       108 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~------~~~~~---r~~a~---~~l~~~~~~~~--~~~~~~l~~~l~  173 (615)
                      .=-+-.|+.-....+-..+.+++.|+...+..-      ....+   +....   .+++.+|.+-.  .+....+.+.+.
T Consensus       445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~  524 (1176)
T KOG1248|consen  445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG  524 (1176)
T ss_pred             hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence            444455555554444456667777776654321      11111   11111   23333433321  122345666665


Q ss_pred             HHhCCCChHHHHHHHHhHHHHHHHhch-----------hhhHhhhHHHHHHhhccCc------hhHHHHHHHHHH-HHHh
Q psy14014        174 NLCQDDTPMVRRAAAGKLGELAKVVEV-----------DYLKTDIIPMFVNLAQDEQ------DSVRLLAVEACV-SIAS  235 (615)
Q Consensus       174 ~l~~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~~~d~~------~~vr~~a~~~l~-~l~~  235 (615)
                      ..+.- .++.|..+|.+|..+.+.-.+           ...-..++|.+..+.+...      ...|..-+..+. ...+
T Consensus       525 ~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~  603 (1176)
T KOG1248|consen  525 AALLK-RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT  603 (1176)
T ss_pred             HHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence            55444 338999999999888876311           1123456777666654332      223333333332 2222


Q ss_pred             hcChhhHHHhHHHHHHHhcCCCChHHH----HHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14014        236 LLSQSDVEQLVMPTLRQCSGDTSWRVR----YMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDF  311 (615)
Q Consensus       236 ~~~~~~~~~~l~~~l~~~~~d~~~~vR----~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  311 (615)
                      ..+.+ ....+...+.+...+.+..++    ......+..++....... ...+..+.-...+.....+|..+...|..+
T Consensus       604 ~t~~d-v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l  681 (1176)
T KOG1248|consen  604 VTPTD-VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEEL  681 (1176)
T ss_pred             cccHH-HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHH
Confidence            22222 223344455555555543333    333333444444332221 223333333344455788999999999998


Q ss_pred             HhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHHHHhhcCCChhHHHHHHHh
Q psy14014        312 CQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISN  389 (615)
Q Consensus       312 ~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l~~~l~d~~~~vr~~a~~~  389 (615)
                      +..-..+.........+...+.+-+++.....|...+.++..+.+..+.+  .+....+|-++-.+++.+..-|..++.+
T Consensus       682 ~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~l  761 (1176)
T KOG1248|consen  682 SSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFAL  761 (1176)
T ss_pred             hcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHH
Confidence            88622222223345667777777888888899999999999998877743  2344556655555588888899999998


Q ss_pred             hhHhhh--hh---chhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC---h
Q psy14014        390 LDCVNE--VI---GIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG---V  461 (615)
Q Consensus       390 l~~l~~--~~---~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~---~  461 (615)
                      |..+..  ..   |.+.  ....+-+++                  +.+...+-....+++..-+-++..+...++   .
T Consensus       762 L~~i~~i~~~~d~g~e~--~~~~lnefl------------------~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld  821 (1176)
T KOG1248|consen  762 LVFIGAIQSSLDDGNEP--ASAILNEFL------------------SIISAGLVGDSTRVVASDIVAITHILQEFKNILD  821 (1176)
T ss_pred             HHHHHHHHhhhcccccc--hHHHHHHHH------------------HHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            877763  11   2111  111122233                  233333333333444443555555554432   3


Q ss_pred             HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh---hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhC
Q psy14014        462 EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA---QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       462 ~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      +.+...++..+--++.....+++.+|+..+..++..+.....   .+.++|.++.+..|.+..+|...-..+..++..+|
T Consensus       822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            445667777777789999999999999999999998876543   35689999999999999999999999999999998


Q ss_pred             hhhH
Q psy14014        539 PTVT  542 (615)
Q Consensus       539 ~~~~  542 (615)
                      .+..
T Consensus       902 ~~eL  905 (1176)
T KOG1248|consen  902 AEEL  905 (1176)
T ss_pred             HHHH
Confidence            8764

>KOG4535|consensus

Probab=98.99  E-value=5.1e-07  Score=86.33  Aligned_cols=294  Identities=14%  Similarity=0.093  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHHHhCccc-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccch-----h----HHHHHhhH
Q psy14014        260 RVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ-----E----NIIMTYIL  329 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~----~~~~~~l~  329 (615)
                      .+|-.+.+.+..++.+++.-. ..-++.-++...+.+..+.++..+...+..+...+..+..     .    ..++..++
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l  349 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML  349 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence            367777788888877766321 1224555666778899999999999999988876542211     0    11222222


Q ss_pred             --HHHHHhhCCCCHHHHHHHHHHHHhhchhh--cchhhhhhhHHHHHHhhcCC-ChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014        330 --PYVKDLVADPNQHVKSALASVIMGLSPIL--GKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQWRV  404 (615)
Q Consensus       330 --p~l~~~~~d~~~~vR~~~~~~l~~l~~~~--g~~~~~~~l~p~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~  404 (615)
                        |.=...-+...+..+.+.|.++.++....  |-++-.....|.|.....|. +.-|+.+|++++..++-+-+......
T Consensus       350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~  429 (728)
T KOG4535|consen  350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI  429 (728)
T ss_pred             cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH
Confidence              21112223344566778888888776431  21222235677787777753 34478888888776654433211110


Q ss_pred             HHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC-----hHhHHHHH----HHHHHHh
Q psy14014        405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG-----VEFFDEKL----NALCMTW  475 (615)
Q Consensus       405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~-----~~~~~~~l----~~~l~~~  475 (615)
                      .                   .+... ..+...+.|+....|..++.+++.|...+-     ++.+.+.+    +..++..
T Consensus       430 f-------------------v~~aa-~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~  489 (728)
T KOG4535|consen  430 F-------------------VADAA-NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRS  489 (728)
T ss_pred             H-------------------HHHHH-HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence            0                   00000 233444556666677777777777766541     11122222    2222222


Q ss_pred             c---CCcchHHHHHHHHHHHHHHHHhChH--HhhhchhH-HHHh----hhcCCCchHHHHHHHHHHHHHhhhC----hhh
Q psy14014        476 L---VDHVYAIREAATLNLKKLVEQFGSE--WAQSTVIP-KVVA----MSRDQNYLHRMTCLFCINVLAEACG----PTV  541 (615)
Q Consensus       476 l---~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~-~l~~----~~~d~~~~~R~~a~~~l~~l~~~~~----~~~  541 (615)
                      .   .-.++.||..|+++++.+...+.+-  .....++. ...+    .....+..||.++|+++|++.+.-.    ...
T Consensus       490 A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~  569 (728)
T KOG4535|consen  490 AIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAP  569 (728)
T ss_pred             HHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCC
Confidence            1   2236779999999999988766421  11111221 1122    2234578899999999999987522    233


Q ss_pred             HHHhhHHHHHhhCC-CCCchHHHHHHHHHHHHh
Q psy14014        542 TANFLLPTVLNMAG-DNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       542 ~~~~i~~~l~~~~~-D~~~~vr~~a~~~l~~l~  573 (615)
                      +...++|.|..++. -++-.||..|+.+|..-.
T Consensus       570 wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  570 WASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             chHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            56788999988775 477889999999997554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.94  E-value=4.1e-05  Score=79.94  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014        166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL  245 (615)
Q Consensus       166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  245 (615)
                      ..+++-+.+.....+.++|+.+-..+..+++..+.+.  -...+.+..=++|+++.+|..|+.+++.+    +...+...
T Consensus        54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~  127 (757)
T COG5096          54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGN  127 (757)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHH
Confidence            4445555555557889999999888888888766432  23456777778899999999999988764    45567788


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhh-HHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD-LVQAFQMLLKDSEAEVRAAAANKVRDFCQN  314 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  314 (615)
                      +++.+.++++|++..||+.++-++..+.+. +++...+. ....+..++.|++|.|..+|+.++..+...
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            999999999999999999999999888754 33333333 677788889999999999999999877653

>KOG1243|consensus

Probab=98.91  E-value=2.3e-08  Score=100.49  Aligned_cols=184  Identities=14%  Similarity=0.226  Sum_probs=163.3

Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHH
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPK  510 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~  510 (615)
                      |.+.++.+..+-.+|...+..+..+...+.++.+.+.++|.+...+.|++..+|+.++.+|..++..++......+++..
T Consensus       333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~  412 (690)
T KOG1243|consen  333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRY  412 (690)
T ss_pred             hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999988666778888


Q ss_pred             HHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHh
Q psy14014        511 VVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD  590 (615)
Q Consensus       511 l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  590 (615)
                      +..+-.|.....|.+..-|+|.++....+......+.-.+.+.+.|+-..-|.++..++....+.++.......+.|.+.
T Consensus       413 ~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~  492 (690)
T KOG1243|consen  413 LARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLV  492 (690)
T ss_pred             HHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhcccccc
Confidence            88887899999999999999999988776654444444556678999999999999999999888887777888899999


Q ss_pred             hhcCCCCccHHHHHHHHHHHHhhc
Q psy14014        591 KLNGDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       591 ~l~~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      .+.-|++..||.-|..++.-+.++
T Consensus       493 pl~vd~e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  493 PLTVDPEKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             ccccCcccchhhHHHHHHHHHHhh
Confidence            999999999999999999877654

>KOG1059|consensus

Probab=98.87  E-value=0.00017  Score=73.14  Aligned_cols=218  Identities=13%  Similarity=0.171  Sum_probs=143.6

Q ss_pred             HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhH
Q psy14014        125 DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK  204 (615)
Q Consensus       125 ~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~  204 (615)
                      ++...+-+-+..+.+.....+|+-|+.++-.++...++..+. -+|.|..-+.|+++.|..+|+..+.++++.-++..  
T Consensus       140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            444455555666666666778888887776666666555443 34566666799999999999999999998766542  


Q ss_pred             hhhHHHHHHhhcc-CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---hC--c
Q psy14014        205 TDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA---VG--P  278 (615)
Q Consensus       205 ~~ll~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~---~~--~  278 (615)
                      -.+-|.|.+++.+ .+.++-.-.+..++.+...-|  ..-..++|.+.+++..++.  ..-+.+|+..+...   .|  +
T Consensus       217 L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d  292 (877)
T KOG1059|consen  217 LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSD  292 (877)
T ss_pred             ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCC
Confidence            2467887777653 344444444555555443322  2345688888888876553  22333343333221   12  2


Q ss_pred             cc-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy14014        279 EI-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS  355 (615)
Q Consensus       279 ~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~  355 (615)
                      +. ...-.+.-+..++.|.+++.+--++-++..+++.-+      ..+...-..+.+++.|.++.+|--++..+..+.
T Consensus       293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp------~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP------KAVQAHKDLILRCLDDKDESIRLRALDLLYGMV  364 (877)
T ss_pred             cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH------HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            11 122345567778899999999999999999887533      234555667778999999999998888887664

>KOG2274|consensus

Probab=98.80  E-value=0.00019  Score=74.71  Aligned_cols=171  Identities=13%  Similarity=0.104  Sum_probs=103.3

Q ss_pred             CchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHH--hChHHhhhchhHHHHh-hhc
Q psy14014        441 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQ--FGSEWAQSTVIPKVVA-MSR  516 (615)
Q Consensus       441 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~-~~~  516 (615)
                      .|.+.++...........-........+...+...+. ...+..-..+..+++.+...  ..+... ..++....+ +..
T Consensus       423 ~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~  501 (1005)
T KOG2274|consen  423 WWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTM  501 (1005)
T ss_pred             HHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhcc
Confidence            4555555555544443111111122223333333333 22333333677777766665  233322 334444444 456


Q ss_pred             CCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh--hhhHHhhHHHHHhhh--
Q psy14014        517 DQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE--TNVIQSQVKPALDKL--  592 (615)
Q Consensus       517 d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~l--  592 (615)
                      |..+.+|..|++++...++...-..+.+.++..+.++..+...+|-...+.+|...++.-+  +......+.|....+  
T Consensus       502 ~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~  581 (1005)
T KOG2274|consen  502 DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL  581 (1005)
T ss_pred             CCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence            7788899999998887764333334567889999999999999999999999998886533  223455566666554  


Q ss_pred             cCCCCccHHHHHHHHHHHHh
Q psy14014        593 NGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       593 ~~d~d~~v~~~a~~a~~~~~  612 (615)
                      ...+|+.|-..+.+.++.+-
T Consensus       582 k~s~DP~V~~~~qd~f~el~  601 (1005)
T KOG2274|consen  582 KYSEDPQVASLAQDLFEELL  601 (1005)
T ss_pred             HhcCCchHHHHHHHHHHHHH
Confidence            45666788888888887654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.79  E-value=0.00012  Score=77.30  Aligned_cols=372  Identities=15%  Similarity=0.194  Sum_probs=219.7

Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc--cchhh
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP--EITKT  283 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~  283 (615)
                      ...+..+++.++.-+| .++..|..+++....+  .....+++.|.++++..+..+...++..+.+++..-.+  .+...
T Consensus       252 ~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~  330 (708)
T PF05804_consen  252 LKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES  330 (708)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            3444555555555555 6678888888876543  23445888999999888888888888888777643221  12234


Q ss_pred             hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc-chh
Q psy14014        284 DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG-KHN  362 (615)
Q Consensus       284 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g-~~~  362 (615)
                      .++|.+.+++..++.+++..+++.|..+..  .++.+.......++|.+..++.+++  .|..+...+..++..-. +..
T Consensus       331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSf--d~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~  406 (708)
T PF05804_consen  331 GIVEKLLKLLPSENEDLVNVALRLLFNLSF--DPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM  406 (708)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence            789999999999999999999999888765  4444555566678999999998765  45667777777764311 111


Q ss_pred             h-hhhhHHHHHHhhcC-CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhc
Q psy14014        363 T-VDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AED  439 (615)
Q Consensus       363 ~-~~~l~p~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~  439 (615)
                      + ....+|.+.+++.. +++.+...++..+..+...   ..-.+.      +   ...-|       +  +.+.+. .+.
T Consensus       407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~---~rnaql------m---~~g~g-------L--~~L~~ra~~~  465 (708)
T PF05804_consen  407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN---KRNAQL------M---CEGNG-------L--QSLMKRALKT  465 (708)
T ss_pred             HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC---HHHHHH------H---HhcCc-------H--HHHHHHHHhc
Confidence            1 22457777776543 4455555444333322211   100010      0   00000       0  122221 111


Q ss_pred             CCchHHHHHHHHhHHHHhhhCh--HhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHh--ChHH--hh--hchhHH
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNALCMTWLVD-HVYAIREAATLNLKKLVEQF--GSEW--AQ--STVIPK  510 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~--~~~~--~~--~~i~~~  510 (615)
                      .+    ...+..+..++..-|+  ..|.+.+.+ +...+.. .+.   +..+.++|.++..-  +.+|  ..  ..++|.
T Consensus       466 ~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~-L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~  537 (708)
T PF05804_consen  466 RD----PLLLKLIRNISQHDGPLKELFVDFIGD-LAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPW  537 (708)
T ss_pred             cc----HHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHH
Confidence            11    1233444455444332  113333333 2333433 233   45566666665532  2222  11  358899


Q ss_pred             HHhhhcCC--CchHHHHHHHHHHHHHhhhC--hhhHHHhhHHHHHhhCCC--CCchHHHHHHHHHHHHhHhhhhhh---H
Q psy14014        511 VVAMSRDQ--NYLHRMTCLFCINVLAEACG--PTVTANFLLPTVLNMAGD--NVANVRFNVAKTLQKIGPILETNV---I  581 (615)
Q Consensus       511 l~~~~~d~--~~~~R~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~D--~~~~vr~~a~~~l~~l~~~~~~~~---~  581 (615)
                      +.+.+..+  .+.+...++..+|.++..-.  .-.....+.+.+..+++.  .|.+.....+.++.++..+-.+..   .
T Consensus       538 L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~  617 (708)
T PF05804_consen  538 LKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK  617 (708)
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence            98887654  44567788888888774211  111234567777776643  356666778888888876543322   1


Q ss_pred             HhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        582 QSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       582 ~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ...+..-+..|.+|++.+||..|-.++..+++
T Consensus       618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e  649 (708)
T PF05804_consen  618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE  649 (708)
T ss_pred             ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34567777888999999999999999999886

>KOG1058|consensus

Probab=98.77  E-value=3.9e-05  Score=77.86  Aligned_cols=328  Identities=13%  Similarity=0.138  Sum_probs=182.7

Q ss_pred             ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHh-hccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        161 TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL-AQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       161 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      .++..+.++|.+.+.+.+....||+.|.-++..+.+....  ..++.-.++..+ ..+.++..++.|.-.|-..    .+
T Consensus       128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~--L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~----D~  201 (948)
T KOG1058|consen  128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH--LIPDAPELIESFLLTEQDPSCKRNAFLMLFTT----DP  201 (948)
T ss_pred             cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh--hcCChHHHHHHHHHhccCchhHHHHHHHHHhc----CH
Confidence            3456677889999999999999999999999998876332  112222222222 2466777777766554432    11


Q ss_pred             hhHHHhHHHHHHHhcCC-CC--hHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        240 SDVEQLVMPTLRQCSGD-TS--WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       240 ~~~~~~l~~~l~~~~~d-~~--~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      +.    .+.++...+.+ ++  ........+.+...+..  ........+..+..++..+++.|+-.|+.++..+...  
T Consensus       202 Er----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--  273 (948)
T KOG1058|consen  202 ER----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--NPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--  273 (948)
T ss_pred             HH----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc--CHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--
Confidence            11    22222222211 11  22333333333333321  1111235666677777777777777666665544321  


Q ss_pred             ccchhHHHHHhhHHHHHHhh-CCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        317 AYNQENIIMTYILPYVKDLV-ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~-~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      +     ..+......+.+++ ..++-.++.....-|..+.  .+.+...+.+.--++..+..++-+||..++...-.++.
T Consensus       274 p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs  346 (948)
T KOG1058|consen  274 P-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS  346 (948)
T ss_pred             H-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence            0     11122222222322 2334455555555555444  22344455566667788888889999998875444433


Q ss_pred             hhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHH---HhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHH
Q psy14014        396 VIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV---ELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALC  472 (615)
Q Consensus       396 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~---~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  472 (615)
                      .-...++.      +++   .              ..+.   ..-++.+.+.|+..++.+...+..+..  +...++|.+
T Consensus       347 srNvediv------~~L---k--------------ke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  347 SRNVEDIV------QFL---K--------------KEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             hccHHHHH------HHH---H--------------HHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            22211111      111   0              1111   112466788999999999998877765  467899999


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhh-cCCCchHHHHHHHHHHHHHhh
Q psy14014        473 MTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS-RDQNYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       473 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~~R~~a~~~l~~l~~~  536 (615)
                      ++++.|.+..--...+..+......+..  ....++..++..+ .=++...-..+++.+|.-++.
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~  464 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCEG  464 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence            9999999987766666766666665542  2233555554432 334555556677777766554

>KOG1992|consensus

Probab=98.76  E-value=0.00042  Score=71.50  Aligned_cols=274  Identities=16%  Similarity=0.135  Sum_probs=142.9

Q ss_pred             CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh--------hcchhhhhhh
Q psy14014        296 SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI--------LGKHNTVDHL  367 (615)
Q Consensus       296 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~--------~g~~~~~~~l  367 (615)
                      ++|-++..+++-+..+=..+++     .+.-.++|.+...+..++.-|..-++.++..+..+        +|.+...+.+
T Consensus       472 ~~pilka~aIKy~~~FR~ql~~-----~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~  546 (960)
T KOG1992|consen  472 EFPILKADAIKYIYTFRNQLGK-----EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFV  546 (960)
T ss_pred             cccchhhcccceeeeecccCCh-----HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHH
Confidence            3444555555444444433333     34556788888888988888888888888777543        3334344444


Q ss_pred             HHHHHHhhc---C----CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC
Q psy14014        368 LPLFLSQLK---D----ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS  440 (615)
Q Consensus       368 ~p~l~~~l~---d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~  440 (615)
                      .+.+.++.+   -    +++-+-....+.+.    ...+       +++.+.|.+...+         . ..+.+..+++
T Consensus       547 ~~ll~nLf~a~s~p~~~EneylmKaImRii~----i~~~-------~i~p~~~~~l~~L---------t-eiv~~v~KNP  605 (960)
T KOG1992|consen  547 EILLTNLFKALSLPGKAENEYLMKAIMRIIS----ILQS-------AIIPHAPELLRQL---------T-EIVEEVSKNP  605 (960)
T ss_pred             HHHHHHHHHhccCCcccccHHHHHHHHHHHH----hCHH-------hhhhhhhHHHHHH---------H-HHHHHHhcCC
Confidence            444444441   1    12222222222221    1111       1112222222111         0 2233334443


Q ss_pred             -CchHHHHHHHHhHHHHhhhChHh------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh
Q psy14014        441 -KWRVRLAIIEYMPLLAGQLGVEF------FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA  513 (615)
Q Consensus       441 -~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  513 (615)
                       +++.-.-..+.++.+....+..-      +...++|.+...+..+..+.=-.+...++.++...+.. ..+.+.|. ..
T Consensus       606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~-ip~~~~~l-~~  683 (960)
T KOG1992|consen  606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGT-IPDSYSPL-FP  683 (960)
T ss_pred             CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHH-HH
Confidence             56666667777777766554322      56778887777777777777788888999998877541 22222222 22


Q ss_pred             hhcCCCchHHHHH----HHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh----H
Q psy14014        514 MSRDQNYLHRMTC----LFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV----I  581 (615)
Q Consensus       514 ~~~d~~~~~R~~a----~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~----~  581 (615)
                      .+-.++-+.|..-    ++.+..+.+..+..+    ....++-++.++...+..+.  .....|..+++.+++..    +
T Consensus       684 ~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh--~GF~LLn~i~~~~~~~~~~py~  761 (960)
T KOG1992|consen  684 PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDH--HGFYLLNTIIESIPPNELAPYM  761 (960)
T ss_pred             HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccch--hHHHHHHHHHhcCCHhhhhHHH
Confidence            2233333334322    223333333322222    23567788888877666555  45667777777776543    3


Q ss_pred             HhhHHHHHhhhcCCCCcc
Q psy14014        582 QSQVKPALDKLNGDTDVD  599 (615)
Q Consensus       582 ~~~~~~~l~~l~~d~d~~  599 (615)
                      ......+++++.+.+-+.
T Consensus       762 k~i~~llf~RlqnskT~k  779 (960)
T KOG1992|consen  762 KQIFGLLFQRLQNSKTEK  779 (960)
T ss_pred             HHHHHHHHHHHhccCcHH
Confidence            334444555565555433

>KOG1078|consensus

Probab=98.75  E-value=0.00014  Score=74.42  Aligned_cols=481  Identities=16%  Similarity=0.145  Sum_probs=246.3

Q ss_pred             HHHhcHHHHHHHhCcc-----hhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhH
Q psy14014         32 NSIKKLSTIALALGQE-----RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV  105 (615)
Q Consensus        32 ~a~~~l~~~~~~~~~~-----~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~  105 (615)
                      .+.+.|.++..-+...     ....++.=-+..+....+. .|+..-..++.+....  ++. -.....+..-....++.
T Consensus        39 ~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is--edv-iivtsslmkD~t~~~d~  115 (865)
T KOG1078|consen   39 KCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS--EDV-IIVTSSLMKDMTGKEDL  115 (865)
T ss_pred             HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc--hhh-hhhhHHHHhhccCCCcc
Confidence            5666666664332221     1222332234456666664 8887777776665421  111 11222233334556778


Q ss_pred             HHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHH
Q psy14014        106 VRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRR  185 (615)
Q Consensus       106 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~  185 (615)
                      .|-.|+.+|+.+...---..++.    ++.+..-+....++.+|.-.--.++ ..+......+.+.......+.+-.+++
T Consensus       116 yr~~AiR~L~~I~d~~m~~~ier----y~kqaivd~~~avSsaalvss~hll-~~~~~~vkrw~neiqea~~s~~~m~Qy  190 (865)
T KOG1078|consen  116 YRAAAIRALCSIIDGTMLQAIER----YMKQAIVDKNPAVSSAALVSSYHLL-PISFDVVKRWANEVQEAVNSDNIMVQY  190 (865)
T ss_pred             hhHHHHHHHHhhcCcchhHHHHH----HHHhHeeccccccchHHHHHHhhhh-cccHHHHHHHHHhhhhccCcHHHHHHH
Confidence            88888888877654322222222    3333334444434333321111111 122333333333333333333445555


Q ss_pred             HHHHhHHHHHHHhchhhhHhhhHHHHHH-hhccCchhHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHhcCCCChHHHH
Q psy14014        186 AAAGKLGELAKVVEVDYLKTDIIPMFVN-LAQDEQDSVRLLAVEACVSIASLLSQ-SDVEQLVMPTLRQCSGDTSWRVRY  263 (615)
Q Consensus       186 ~a~~~l~~l~~~~~~~~~~~~ll~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~  263 (615)
                      .+...+..+-+..  ......++..+.. .++++-  -+..-+..   .++.+.. ......+.|.+..++.+...-|-.
T Consensus       191 HalglLyqirk~d--rla~sklv~~~~~~~~~~~~--A~~~lir~---~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~  263 (865)
T KOG1078|consen  191 HALGLLYQIRKND--RLAVSKLVQKFTRGSLKSPL--AVCMLIRI---ASELLKENQQADSPLFPFLESCLRHKSEMVIY  263 (865)
T ss_pred             HHHHHHHHHHhhh--HHHHHHHHHHHccccccchh--HHHHHHHH---HHHHhhhcccchhhHHHHHHHHHhchhHHHHH
Confidence            5554444442211  1112223322222 011111  01000111   1111111 112345788888888888888888


Q ss_pred             HHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHH
Q psy14014        264 MVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHV  343 (615)
Q Consensus       264 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~v  343 (615)
                      -++..+..+....+.+..  ..+..+..+++.+.+.+|-+|.+.|.+++...+..      ....-+-+..+++|.+-.+
T Consensus       264 EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~------v~~cN~elE~lItd~NrsI  335 (865)
T KOG1078|consen  264 EAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA------VTVCNLDLESLITDSNRSI  335 (865)
T ss_pred             HHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc------ccccchhHHhhhcccccch
Confidence            888877776655544432  26677888899999999999999999988765422      2223345666778777655


Q ss_pred             HHHHHHHHHhhchhhcchhhhhhhHHHH---HHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccc
Q psy14014        344 KSALASVIMGLSPILGKHNTVDHLLPLF---LSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG  420 (615)
Q Consensus       344 R~~~~~~l~~l~~~~g~~~~~~~l~p~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~  420 (615)
                      -.-+.-.+-.    .|.+...+.++..+   ..-+.|+..-|...|+++|+...   .. .|.   .++.          
T Consensus       336 at~AITtLLK----TG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~-k~~---~~m~----------  394 (865)
T KOG1078|consen  336 ATLAITTLLK----TGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PR-KHT---VMMN----------  394 (865)
T ss_pred             hHHHHHHHHH----hcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cH-HHH---HHHH----------
Confidence            4444333322    24444444444444   44445555566667776665432   11 111   1111          


Q ss_pred             cchhhhhhhhHHHHHhh-hcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC
Q psy14014        421 VEFFDEKLNALSIVELA-EDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG  499 (615)
Q Consensus       421 ~~~~~~~l~~~~i~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  499 (615)
                                 .+..++ ++.....+.+.++++..++......  .+..+..+..++.|.  +.+.-+...+..+.+...
T Consensus       395 -----------FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP  459 (865)
T KOG1078|consen  395 -----------FLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGP  459 (865)
T ss_pred             -----------HHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCC
Confidence                       222222 2455666777777776665522111  112222333333332  234556666666655432


Q ss_pred             hHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        500 SEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       500 ~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      ........+..+.+..-=.|..+|.+|..++..++  .+.....+.+.-.+.+++.|.|..||..|.-.+..+-
T Consensus       460 ~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  460 KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            11112234444555455567788999999998887  3333445567777888889999999998888887775

>KOG1820|consensus

Probab=98.74  E-value=2.5e-06  Score=90.45  Aligned_cols=345  Identities=13%  Similarity=0.148  Sum_probs=212.2

Q ss_pred             hhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch-hhh
Q psy14014        206 DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT-KTD  284 (615)
Q Consensus       206 ~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~  284 (615)
                      .+++.....+.......|....+++..+...-.    ....+..+..+..-.++..-.+++..+..+..-+|.... ...
T Consensus        63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~  138 (815)
T KOG1820|consen   63 QLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLED----IKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA  138 (815)
T ss_pred             eeccchhhhcccccccccCcchhHHHHHHHhhh----hHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence            345555555555555666666666666522211    223444444455555555555566666666655554322 122


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH---HhhHHHH-------------------HHh---hCCC
Q psy14014        285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM---TYILPYV-------------------KDL---VADP  339 (615)
Q Consensus       285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~---~~l~p~l-------------------~~~---~~d~  339 (615)
                      +++.+-.+.   +..||..+...+..+....+.......+.   ..++--+                   ...   ..++
T Consensus       139 ~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (815)
T KOG1820|consen  139 FIKHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDP  215 (815)
T ss_pred             ccccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCC
Confidence            333333333   55678888888888776655432210000   0000000                   001   1223


Q ss_pred             CHHHHHHHHHHHHhhchh-----------hcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHH
Q psy14014        340 NQHVKSALASVIMGLSPI-----------LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAI  408 (615)
Q Consensus       340 ~~~vR~~~~~~l~~l~~~-----------~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i  408 (615)
                      ++.-+...-.........           +........+-|.+...+.+.+|.-|..+++.+-..++..+ ..       
T Consensus       216 n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~-------  287 (815)
T KOG1820|consen  216 NVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KE-------  287 (815)
T ss_pred             ChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cc-------
Confidence            333322211111111110           11122344566777777778888888888776655443322 00       


Q ss_pred             HhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcchHHHHH
Q psy14014        409 IEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVYAIREA  486 (615)
Q Consensus       409 ~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vR~~  486 (615)
                                 ....+.+.+. ..+.....|.|..+-..++..|..++..++..+  +...+.|.++..+.+....+|.+
T Consensus       288 -----------~~~~~~~ll~-~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~  355 (815)
T KOG1820|consen  288 -----------IVKGYTGLLG-ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDA  355 (815)
T ss_pred             -----------cccCcchHHH-HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHH
Confidence                       0011111111 234445678999999999999999999988764  44668899999999999999999


Q ss_pred             HHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh----hhHHHhhHHHHHhhCCCCCchHH
Q psy14014        487 ATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP----TVTANFLLPTVLNMAGDNVANVR  562 (615)
Q Consensus       487 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~D~~~~vr  562 (615)
                      +..++..++...+    ...+.+.+..++++.+|..|..+...+.......++    ..-...+.|.+....+|.+.+||
T Consensus       356 l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR  431 (815)
T KOG1820|consen  356 LLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVR  431 (815)
T ss_pred             HHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHH
Confidence            9999999887433    346888999999999999999999999998887763    22246789999999999999999


Q ss_pred             HHHHHHHHHHhHhhhhhhH
Q psy14014        563 FNVAKTLQKIGPILETNVI  581 (615)
Q Consensus       563 ~~a~~~l~~l~~~~~~~~~  581 (615)
                      .++..+++.+...+|...+
T Consensus       432 ~Aa~e~~~~v~k~~Ge~~~  450 (815)
T KOG1820|consen  432 KAALEAVAAVMKVHGEEVF  450 (815)
T ss_pred             HHHHHHHHHHHHHhhHHHH
Confidence            9999999999988875443

>KOG1078|consensus

Probab=98.69  E-value=9e-05  Score=75.83  Aligned_cols=428  Identities=15%  Similarity=0.142  Sum_probs=229.7

Q ss_pred             CChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc---CchhHHHHHHHHHHHHHhh
Q psy14014        160 VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD---EQDSVRLLAVEACVSIASL  236 (615)
Q Consensus       160 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d---~~~~vr~~a~~~l~~l~~~  236 (615)
                      +++..-.+++=.+.++.++.+...|+.+-.++.+++....      +.+-...++.+|   .++.+|..|+.+|-.+   
T Consensus        57 ~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ise------dviivtsslmkD~t~~~d~yr~~AiR~L~~I---  127 (865)
T KOG1078|consen   57 FGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISE------DVIIVTSSLMKDMTGKEDLYRAAAIRALCSI---  127 (865)
T ss_pred             cchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccch------hhhhhhHHHHhhccCCCcchhHHHHHHHHhh---
Confidence            3444445566666888999999999999998888876432      233333444444   4567787777766554   


Q ss_pred             cChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHH-------HhCccc-----hhh-----hHHHHHHHhhcCCcHH
Q psy14014        237 LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQK-------AVGPEI-----TKT-----DLVQAFQMLLKDSEAE  299 (615)
Q Consensus       237 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~-------~~~~~~-----~~~-----~l~~~l~~~l~d~~~~  299 (615)
                      ++.. ....+-.++.+.+-|++.-++.++.-.=..+..       .+.++.     ..+     +.+..+.+ +.+   .
T Consensus       128 ~d~~-m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyq-irk---~  202 (865)
T KOG1078|consen  128 IDGT-MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQ-IRK---N  202 (865)
T ss_pred             cCcc-hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHH-HHh---h
Confidence            3322 133355566666666666555544322111111       000000     000     11111111 111   1


Q ss_pred             HHHHHHHHHHHHHhhccccch---------------hHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhh
Q psy14014        300 VRAAAANKVRDFCQNLDAYNQ---------------ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV  364 (615)
Q Consensus       300 vr~~a~~~l~~~~~~~~~~~~---------------~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~  364 (615)
                      .|.+..+.+..+.........               .......++|.+...+.+....|-..++.++..+....+.+.. 
T Consensus       203 drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-  281 (865)
T KOG1078|consen  203 DRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-  281 (865)
T ss_pred             hHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-
Confidence            122222222222221100000               0112345677777888888888888888888877655443211 


Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhh-----------hhhhhccccchhhhhhhhHHH
Q psy14014        365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM-----------PLLAGQLGVEFFDEKLNALSI  433 (615)
Q Consensus       365 ~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l-----------~~l~~~~~~~~~~~~l~~~~i  433 (615)
                       .-+..+..+++......|.+|.+.|..+.......-......+...+           +...-+.|.+--.+.|. ..+
T Consensus       282 -pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm-~qI  359 (865)
T KOG1078|consen  282 -PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLM-KQI  359 (865)
T ss_pred             -hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHH-HHH
Confidence             13445566777777889999999998876543221100000000000           00001112222222222 133


Q ss_pred             HHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014        434 VELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV  512 (615)
Q Consensus       434 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~  512 (615)
                      ..+.+|-+...+-..++++..++..+...  ...+++.+.++|. +...+-+.+.+.++..++.....  ..+..+..|-
T Consensus       360 ~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~LC  435 (865)
T KOG1078|consen  360 SSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEHLC  435 (865)
T ss_pred             HHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHHHH
Confidence            33333333333344555555555555543  2345566666554 44567778888888777764332  2234556666


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014        513 AMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  592 (615)
Q Consensus       513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  592 (615)
                      .+..|...  +.-+.+.++.+++.++.....+...-.+.+..-=.+..||.+|..+|..+.  .+.....+.+..++++-
T Consensus       436 efIEDce~--~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc  511 (865)
T KOG1078|consen  436 EFIEDCEF--TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRC  511 (865)
T ss_pred             HHHHhccc--hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHH
Confidence            66666554  455666667666554332211111122222222236789999999999998  34456677889999998


Q ss_pred             cCCCCccHHHHHHHHHHHHh
Q psy14014        593 NGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       593 ~~d~d~~v~~~a~~a~~~~~  612 (615)
                      +.|+|.+||..|..+++.+.
T Consensus       512 ~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  512 LNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hcCchHHHHHHHHHHHHHhh
Confidence            99999999999999998875

>KOG2062|consensus

Probab=98.66  E-value=2.6e-05  Score=78.93  Aligned_cols=156  Identities=18%  Similarity=0.122  Sum_probs=109.9

Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHhChHHhhhchhH
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTW-LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIP  509 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  509 (615)
                      |.|.+++.|.++-+|...+-.+..--...|..    ..+..++.. .+|.+..||.+|+.++|-++-.      -....|
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~~  591 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQLP  591 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhHHHhhcccccccchHHHHHHHHHheeeEec------Chhhch
Confidence            67888899999999988777665443334443    233334443 7899999999999998877532      124566


Q ss_pred             HHHhhh-cCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHH
Q psy14014        510 KVVAMS-RDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVK  586 (615)
Q Consensus       510 ~l~~~~-~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  586 (615)
                      ....++ ++-|+.||..++.++|..+-.-|...    ....|..+..|++.-||+.|+-+++-|.-+..+.  .-...+.
T Consensus       592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr  667 (929)
T KOG2062|consen  592 STVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR  667 (929)
T ss_pred             HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence            666655 45699999999999999876555433    5666777788999999999999999887655421  1123455


Q ss_pred             HHHhhhcCCCCccH
Q psy14014        587 PALDKLNGDTDVDV  600 (615)
Q Consensus       587 ~~l~~l~~d~d~~v  600 (615)
                      .-+.+..+|+.+++
T Consensus       668 k~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  668 KQLEKVINDKHEDG  681 (929)
T ss_pred             HHHHHHhhhhhhHH
Confidence            55555667776664

>KOG0413|consensus

Probab=98.66  E-value=0.00052  Score=71.79  Aligned_cols=475  Identities=13%  Similarity=0.035  Sum_probs=250.3

Q ss_pred             HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc----------
Q psy14014        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE----------  199 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~----------  199 (615)
                      +..++..-+-|.-..+|..|...+..+....+...-..|+..+..-+.|+-..+++.....+..-.....          
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~  552 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL  552 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence            4445555556666778888877776665554444445566666666666667777665554332111100          


Q ss_pred             -----------------hhhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHH
Q psy14014        200 -----------------VDYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRV  261 (615)
Q Consensus       200 -----------------~~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v  261 (615)
                                       ...+...++-++...++ |+...||+.|...+.....+...+...+..+-++..++.|+-..|
T Consensus       553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv  632 (1529)
T KOG0413|consen  553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV  632 (1529)
T ss_pred             cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence                             01123446666666666 888899999999999988888887777777888999999999999


Q ss_pred             HHHHHHHHHHHHHHhCccch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh-ccccchhHHHH-Hh------hHHHH
Q psy14014        262 RYMVADKFTDLQKAVGPEIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN-LDAYNQENIIM-TY------ILPYV  332 (615)
Q Consensus       262 R~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~-~~------l~p~l  332 (615)
                      |..++.+|+.+...-+.-.. ....+-.++..++|.+..|.+.|...+..+..- +.+...-.|.+ ..      .-.++
T Consensus       633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl  712 (1529)
T KOG0413|consen  633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYL  712 (1529)
T ss_pred             HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999987654222111 123445677788999999999998877665542 22221111110 00      00111


Q ss_pred             HHh-------------------------hCCCCHHHHHHHHHHHHhhc--hh-hc------chhhhhhhHHHHHH----h
Q psy14014        333 KDL-------------------------VADPNQHVKSALASVIMGLS--PI-LG------KHNTVDHLLPLFLS----Q  374 (615)
Q Consensus       333 ~~~-------------------------~~d~~~~vR~~~~~~l~~l~--~~-~g------~~~~~~~l~p~l~~----~  374 (615)
                      ...                         ..|+-|.+-..++....++-  .. ..      .++..++ +-++.+    +
T Consensus       713 ~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~-L~hI~~~i~~i  791 (1529)
T KOG0413|consen  713 MSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQY-LIHIIENIKKI  791 (1529)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHH-HHHHHHHHHhh
Confidence            100                         12334544333322222210  00 00      0111112 222222    2


Q ss_pred             hcCCChhHHHHHHHhhhHhhhhhchhHHHHHH--HHHhhhhhhhhcc--ccchhhhhhhh-------HHHHHhhhc----
Q psy14014        375 LKDECPEVRLNIISNLDCVNEVIGIQQWRVRL--AIIEYMPLLAGQL--GVEFFDEKLNA-------LSIVELAED----  439 (615)
Q Consensus       375 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~l~~~~--~~~~~~~~l~~-------~~i~~~~~~----  439 (615)
                      -++-....+.....++..+++.-+ ..|....  ..++.+..++-+.  -.++..|.+..       |. ....++    
T Consensus       792 ~~~l~s~~vd~~~~a~K~~Ck~~~-~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~-~~~~~~~~~~  869 (1529)
T KOG0413|consen  792 DDDLKSDLVDTLQGAFKDYCKHPS-SRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQS-FEMFKDKDEW  869 (1529)
T ss_pred             hhcccHHHHHHHHHHHHHHHcCCc-cccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhH-HhhhhhhHHH
Confidence            222222333333333333333322 1121111  0111111111000  01111121110       11 111111    


Q ss_pred             -CCchHHHHHHHHhHHHH-----hhhChHhHHHHHHHHHHHhc----C-------------------------CcchHHH
Q psy14014        440 -SKWRVRLAIIEYMPLLA-----GQLGVEFFDEKLNALCMTWL----V-------------------------DHVYAIR  484 (615)
Q Consensus       440 -~~~~vr~~~~~~l~~l~-----~~~~~~~~~~~l~~~l~~~l----~-------------------------d~~~~vR  484 (615)
                       .+..-...++-.--.++     ..++.. -....++.+.+-.    .                         -....+|
T Consensus       870 ~~~s~~~~~~l~~~y~v~~~~~~ql~P~a-r~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vr  948 (1529)
T KOG0413|consen  870 KRNSESQERLLCTAYNVAFSYSPQLVPHA-RLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVR  948 (1529)
T ss_pred             hhcchhHHHHHHHHhhccccccceeccch-hccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHH
Confidence             11111111111111111     101100 0011111111110    0                         1145688


Q ss_pred             HHHHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHH
Q psy14014        485 EAATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRF  563 (615)
Q Consensus       485 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~  563 (615)
                      ..+..++++++-.-+  ......+|.+.+-++ .....+|.+.+-+++.++..+.  ...+...|.+...+.|+++-||.
T Consensus       949 a~~vvTlakmcLah~--~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen  949 AVGVVTLAKMCLAHD--RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred             HHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhcCchHHHHH
Confidence            889999999886543  244568898877554 4566789998888888875442  23456789999999999999999


Q ss_pred             HHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        564 NVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       564 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+...|+++.+.-=-++-...+...+..| -|.++++|..|...++.+-.
T Consensus      1025 qt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1025 QTIILLARLLQFGIVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             HHHHHHHHHHhhhhhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHh
Confidence            99999999986422223334455555555 68999999999988876643

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.64  E-value=4.9e-05  Score=77.02  Aligned_cols=334  Identities=16%  Similarity=0.123  Sum_probs=197.6

Q ss_pred             HHHHhcCccH---HHHHHHHhcHHHHHHHhCcchhhccchhhhhh----hcCC--cHHHHHHHHHHhccccCCCCC----
Q psy14014         18 LIDELKNEDV---QLRLNSIKKLSTIALALGQERTRGELIPFLTE----TIYD--EDEVLLALAEQLGTFTPNVGG----   84 (615)
Q Consensus        18 ll~~l~s~d~---~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~----~~~~--~~~vr~~a~~~l~~l~~~~~~----   84 (615)
                      ++..+.+.+.   ..+...+..|..++   ......+.+++.+.+    .++.  +.+.-..+..++..+.+....    
T Consensus         4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls---~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~   80 (415)
T PF12460_consen    4 LLALLPDSDSSTDSNYERILEALAALS---TSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF   80 (415)
T ss_pred             HHhhCCCCCCcchhHHHHHHHHHHHHH---CChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence            3444444333   33444555555554   333344445554433    3321  223444555555555432211    


Q ss_pred             ---cchhhh-chHHHhhhhc-----Cc--hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhc---------CCC--
Q psy14014         85 ---PEYVHC-LLPPLESLAT-----VE--ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS---------GDW--  142 (615)
Q Consensus        85 ---~~~~~~-l~~~l~~l~~-----~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~---------~~~--  142 (615)
                         ..|.+. ++|.+..+..     ++  ++.+-..+...+..+...++.+.-.+.+-....-...         +..  
T Consensus        81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~  160 (415)
T PF12460_consen   81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI  160 (415)
T ss_pred             chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence               122232 6665544431     22  3567777778888888888876554442222221220         100  


Q ss_pred             --cchhhh--HHhhhhhhccCCChhhHHHHHHHHHHHh-CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhh-c
Q psy14014        143 --FTSRTS--ACGLFSVCYPRVTAGVKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA-Q  216 (615)
Q Consensus       143 --~~~r~~--a~~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~  216 (615)
                        ...|..  ..++++.+-+.+.-....+++..+..+. ...++..|..+++.++.+....+++.....++..+.... .
T Consensus       161 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~  240 (415)
T PF12460_consen  161 SEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS  240 (415)
T ss_pred             ccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc
Confidence              111221  1133333333332112334666555554 445699999999999999988766554555665555544 5


Q ss_pred             cCchhHHHHHHHHHHHHHhhcC--hhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---------------c
Q psy14014        217 DEQDSVRLLAVEACVSIASLLS--QSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---------------E  279 (615)
Q Consensus       217 d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---------------~  279 (615)
                      ......|..+++.+..+++.+-  .......+...+.+++.|  +.+...+++.|+-+....+.               +
T Consensus       241 ~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQ  318 (415)
T PF12460_consen  241 SEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQ  318 (415)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhH
Confidence            5666778888888776665442  222334466667777777  66788888888877643210               0


Q ss_pred             chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       280 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      -....++|.+.+..++.+.+.|.....+|..+++++|..-.. ...+.++|.+.+.+.-++..+|.+++.++..+...
T Consensus       319 R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  319 RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            112457888888888888889999999999999998865432 34677999999999989999999999988877653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1058|consensus

Probab=98.63  E-value=0.00041  Score=70.76  Aligned_cols=315  Identities=14%  Similarity=0.133  Sum_probs=175.9

Q ss_pred             HHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc-hhhhHHHHHH
Q psy14014        212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQ  290 (615)
Q Consensus       212 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~  290 (615)
                      ..-++++++.+|-..+..+..+    .+.+....++|.+..++++++..||+.++-++..+...+..-. ..++++..+ 
T Consensus       105 RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~f-  179 (948)
T KOG1058|consen  105 RKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESF-  179 (948)
T ss_pred             hhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHH-
Confidence            3345688999998877766543    4445566789999999999999999999999888776522110 112333322 


Q ss_pred             HhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC---CCCHHHHHHHHHHHHhhchhhcchhhhhhh
Q psy14014        291 MLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA---DPNQHVKSALASVIMGLSPILGKHNTVDHL  367 (615)
Q Consensus       291 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~---d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l  367 (615)
                       +..+.++..+..|+-.|-..-.            +..+.|+...+.   +-+......+.+.+...+..  ........
T Consensus       180 -L~~e~DpsCkRNAFi~L~~~D~------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--~p~~~~~~  244 (948)
T KOG1058|consen  180 -LLTEQDPSCKRNAFLMLFTTDP------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--NPAEKARY  244 (948)
T ss_pred             -HHhccCchhHHHHHHHHHhcCH------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc--CHHHhhHH
Confidence             3467788888877766543221            234444444332   22345555555555555431  11122345


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh-hcCCchHHH
Q psy14014        368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA-EDSKWRVRL  446 (615)
Q Consensus       368 ~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~-~~~~~~vr~  446 (615)
                      +..+..+|...++.|+..|..++..+....  ..+..  +.                      ..+.+++ +.++-+++.
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p--~alk~--Aa----------------------~~~i~l~~kesdnnvkl  298 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDP--TALKA--AA----------------------STYIDLLVKESDNNVKL  298 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEccCCH--HHHHH--HH----------------------HHHHHHHHhccCcchhh
Confidence            667777888778888888877765543211  11100  00                      1111111 122333444


Q ss_pred             HHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh---hhcCCCchHH
Q psy14014        447 AIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA---MSRDQNYLHR  523 (615)
Q Consensus       447 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~---~~~d~~~~~R  523 (615)
                      -...-+..+. ......+.+.++. ++..+..++.+||..++...-.++..-+.+.....+-..+.+   .-.+.+...|
T Consensus       299 Ivldrl~~l~-~~~~~il~~l~mD-vLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yR  376 (948)
T KOG1058|consen  299 IVLDRLSELK-ALHEKILQGLIMD-VLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYR  376 (948)
T ss_pred             hhHHHHHHHh-hhhHHHHHHHHHH-HHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHH
Confidence            4444444443 1122223333333 567788888888888888776666543332221111112221   1234566678


Q ss_pred             HHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014        524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       524 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~  576 (615)
                      +..++++...+-.++  .+...+.|.+...+.|.++..-..+..-+...++.+
T Consensus       377 qlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~  427 (948)
T KOG1058|consen  377 QLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKF  427 (948)
T ss_pred             HHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC
Confidence            888888888765543  345667888888888877755444444444444443

>KOG1077|consensus

Probab=98.62  E-value=0.00094  Score=67.74  Aligned_cols=75  Identities=9%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc-CCChhHHHHHHHhhhHhhhhhc
Q psy14014        324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIG  398 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~  398 (615)
                      ........|-+.+.+.+..+|--+++.+..++..-..-....+-...++..|+ +++..||+.|+..|-.++..-.
T Consensus       326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N  401 (938)
T KOG1077|consen  326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN  401 (938)
T ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence            34445555666677778888888888888777652222223333667777777 7889999999998877765433

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.62  E-value=0.0013  Score=69.17  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=112.8

Q ss_pred             hcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhh-hcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhc
Q psy14014         22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLAT  100 (615)
Q Consensus        22 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  100 (615)
                      +.|.+...|..|++.+-... ..|.+  ...+.|-+.. ....+.++++..=-=+..+++.-  ++-.-..++.+..=+.
T Consensus        28 l~s~n~~~kidAmK~iIa~M-~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQM-SLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence            66777888889988765553 23444  3445555444 33444478776654444444422  2222223455666678


Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHH-HHHHHHHHhCCC
Q psy14014        101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE-LRSHFRNLCQDD  179 (615)
Q Consensus       101 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-l~~~l~~l~~d~  179 (615)
                      |+++.+|-.|+.+++.+    ....+...+++.+.++.++++..+|+.|+-.+..++..=.+..... ....+..+..|.
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~  178 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS  178 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence            89999999999777654    5566777888889999999999999999888888775544433333 556677788899


Q ss_pred             ChHHHHHHHHhHHHHHH
Q psy14014        180 TPMVRRAAAGKLGELAK  196 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~  196 (615)
                      +|.|-.+|..++..+..
T Consensus       179 dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         179 DPIVIANALASLAEIDP  195 (757)
T ss_pred             CchHHHHHHHHHHHhch
Confidence            99999988888877754

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.62  E-value=4.1e-07  Score=69.80  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH--HHhhHHHHHhhCCCCC
Q psy14014        483 IREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT--ANFLLPTVLNMAGDNV  558 (615)
Q Consensus       483 vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~D~~  558 (615)
                      .|..++.++..++..++..  .+.+.++|.++..+.|+++++|..|++++.++++.......  .+.+++.|.++..|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3777888888887777654  24467888888888999999999999999998887766553  3668888888889999


Q ss_pred             chHHHHHHHHHHHH
Q psy14014        559 ANVRFNVAKTLQKI  572 (615)
Q Consensus       559 ~~vr~~a~~~l~~l  572 (615)
                      ++||.++ ..|.++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9998866 555544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.58  E-value=0.00045  Score=70.10  Aligned_cols=198  Identities=17%  Similarity=0.158  Sum_probs=136.3

Q ss_pred             hHHHHHHhh-cCCChhHHHHHHHhhhHhhhhhchhH-HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCch
Q psy14014        367 LLPLFLSQL-KDECPEVRLNIISNLDCVNEVIGIQQ-WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKWR  443 (615)
Q Consensus       367 l~p~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~~  443 (615)
                      ++..+.+.. ..+++..|..+.+.++.++.....++ +...      +                  ...... .......
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~------l------------------~~~~~~~~~~~~~~  245 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEF------L------------------DSLLQSISSSEDSE  245 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHH------H------------------HHHHhhhcccCCcc
Confidence            555555554 34458899999999888876653322 2111      1                  111111 2344556


Q ss_pred             HHHHHHHHhHHHHhhh---ChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---------------HHhhh
Q psy14014        444 VRLAIIEYMPLLAGQL---GVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---------------EWAQS  505 (615)
Q Consensus       444 vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---------------~~~~~  505 (615)
                      .|..+++.+..+++++   |.. ....+...++.++.|  ..+...+.+.++.+......               ..+..
T Consensus       246 ~~~~~~~~~~Wi~KaLv~R~~~-~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~  322 (415)
T PF12460_consen  246 LRPQALEILIWITKALVMRGHP-LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT  322 (415)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH
Confidence            6777888887787765   222 234567777888877  66788899998888765211               01234


Q ss_pred             chhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHH---HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHH
Q psy14014        506 TVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTA---NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ  582 (615)
Q Consensus       506 ~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~  582 (615)
                      .++|.+.+.++..+...|.+.+.++..+.+..+...+.   +.++|.+.+.+.-++++++..+..++..+.... ++.+.
T Consensus       323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~  401 (415)
T PF12460_consen  323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELIS  401 (415)
T ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            58889988888877779999999999999999887764   579999999998889999999999999998654 34455


Q ss_pred             hhHHHHHhhh
Q psy14014        583 SQVKPALDKL  592 (615)
Q Consensus       583 ~~~~~~l~~l  592 (615)
                      +.+..++..|
T Consensus       402 ~hl~sLI~~L  411 (415)
T PF12460_consen  402 EHLSSLIPRL  411 (415)
T ss_pred             HHHHHHHHHH
Confidence            5566665555

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.56  E-value=9.5e-07  Score=67.83  Aligned_cols=88  Identities=25%  Similarity=0.297  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh--HHhhHHHHHhhhcCCCC
Q psy14014        522 HRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV--IQSQVKPALDKLNGDTD  597 (615)
Q Consensus       522 ~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~l~~d~d  597 (615)
                      .|..++.++..++..++...  +.+.++|.+.+++.|++..||+.|+++|.++........  ....+.+.+-++..|.|
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            58888999999988877653  457899999999999999999999999999998776543  34667777788899999


Q ss_pred             ccHHHHHHHHHH
Q psy14014        598 VDVKYFAQEAIS  609 (615)
Q Consensus       598 ~~v~~~a~~a~~  609 (615)
                      +.||..|...-.
T Consensus        82 ~~Vr~~a~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAAELLDR   93 (97)
T ss_pred             hhHHHHHHHHHH
Confidence            999999965433

>KOG4535|consensus

Probab=98.52  E-value=7.5e-05  Score=71.96  Aligned_cols=461  Identities=12%  Similarity=0.083  Sum_probs=239.3

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCC
Q psy14014        101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT  180 (615)
Q Consensus       101 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~  180 (615)
                      +.+..||..|...+....+.++...+..+    ...+.-|...               .-+    +   .++.-.++|++
T Consensus         7 ~~~akvr~~al~~~~~~~~~~~~~~~ygy----w~~~~pd~~~---------------~g~----p---~l~~l~lkd~~   60 (728)
T KOG4535|consen    7 SYQAKVRQGALVCFLSTIKSIEKKVLYGY----WSAFIPDTPE---------------LGS----P---SLMTLTLKDPS   60 (728)
T ss_pred             hHHHHHHhhHHHHHHHHHhhhhhhhhhce----eeeecCCCCC---------------CCC----c---eeeEEecCCCC
Confidence            34678999999999998888876543322    1111111100               000    0   01122357888


Q ss_pred             hHHHHHHHHhHHHHHHHh----------chhhhHh----------hhHHHHHHh-hccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        181 PMVRRAAAGKLGELAKVV----------EVDYLKT----------DIIPMFVNL-AQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       181 ~~vR~~a~~~l~~l~~~~----------~~~~~~~----------~ll~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      ++.|..+++.+..+....          ++..+.+          .+.-+++.. ..+..+.+-..+++++..+....+-
T Consensus        61 ~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~  140 (728)
T KOG4535|consen   61 PKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY  140 (728)
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch
Confidence            888888877776664321          1111110          111122222 2344566777888888888887775


Q ss_pred             hh----HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---------------hhhhHH--HHHHHhhc----
Q psy14014        240 SD----VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---------------TKTDLV--QAFQMLLK----  294 (615)
Q Consensus       240 ~~----~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---------------~~~~l~--~~l~~~l~----  294 (615)
                      +.    +...+...++.++.+.++.||-.+...++.+......-.               ..+++-  ..+.++..    
T Consensus       141 ~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~  220 (728)
T KOG4535|consen  141 DRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSL  220 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchh
Confidence            43    233466677888889999999998888877654321100               000110  01111110    


Q ss_pred             ---------------------------------------------CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhH
Q psy14014        295 ---------------------------------------------DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYIL  329 (615)
Q Consensus       295 ---------------------------------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~  329 (615)
                                                                   -.-..+|..+++.+..++.+++-.   ..+.-++.
T Consensus       221 ~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~---~~~~~~l~  297 (728)
T KOG4535|consen  221 EETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMT---QAYLMELG  297 (728)
T ss_pred             hhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence                                                         011246666666666666654321   12233444


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhchhhcch----hhhhhhHHH-HH-Hhh---------cCCChhHHHHHHHhhhHhh
Q psy14014        330 PYVKDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPL-FL-SQL---------KDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       330 p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~----~~~~~l~p~-l~-~~l---------~d~~~~vr~~a~~~l~~l~  394 (615)
                      ..+...+.+..+.++.-++..+..+....+.+    .....+... |. -.+         ....+..+-.++.++..+.
T Consensus       298 RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~  377 (728)
T KOG4535|consen  298 RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSIL  377 (728)
T ss_pred             HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcC
Confidence            55555667777777777777777666554421    111111100 11 011         0111222222222222221


Q ss_pred             hhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh---HHHHHHH
Q psy14014        395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNA  470 (615)
Q Consensus       395 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~  470 (615)
                      ...    +       +-+|.     |.    ... .+.+.....| ++--+|.+++..+....-..|...   +......
T Consensus       378 ~~~----f-------~~lpn-----~~----~T~-~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~  436 (728)
T KOG4535|consen  378 PEA----F-------SNLPN-----DR----QTL-CITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAAN  436 (728)
T ss_pred             chh----h-------cCCCC-----cc----hhh-hHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHH
Confidence            100    0       00000     00    000 0344444443 344466666666554432223221   2233444


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHhCh-----HHhhhc----hhHHHHhh---hcCCCchHHHHHHHHHHHHHhhhC
Q psy14014        471 LCMTWLVDHVYAIREAATLNLKKLVEQFGS-----EWAQST----VIPKVVAM---SRDQNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~----i~~~l~~~---~~d~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      .+...+.|+...+|+.+..+++.|...+-.     +.+...    .+-.+...   +.-.+++||.++.+++|++.....
T Consensus       437 ~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq  516 (728)
T KOG4535|consen  437 AILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ  516 (728)
T ss_pred             HHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH
Confidence            556667888999999999999999887621     222222    23333332   233588899999999999987654


Q ss_pred             hhh---HHHh----hHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh----hhhHHhhHHHHHhhh-cCCCCccHHHHHHH
Q psy14014        539 PTV---TANF----LLPTVLNMAGDNVANVRFNVAKTLQKIGPILE----TNVIQSQVKPALDKL-NGDTDVDVKYFAQE  606 (615)
Q Consensus       539 ~~~---~~~~----i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~l-~~d~d~~v~~~a~~  606 (615)
                      +-.   +.+.    +...+..-.....-.||+++|.+++++.++-.    +.....++.+++-.| ....+--||-.|..
T Consensus       517 ~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~  596 (728)
T KOG4535|consen  517 PIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAA  596 (728)
T ss_pred             HhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhh
Confidence            211   1111    11222222345566899999999999986521    223345666666665 56678889999888


Q ss_pred             HHHHH
Q psy14014        607 AISSI  611 (615)
Q Consensus       607 a~~~~  611 (615)
                      |+..-
T Consensus       597 aL~vp  601 (728)
T KOG4535|consen  597 ALSVP  601 (728)
T ss_pred             hhcCC
Confidence            87643

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.50  E-value=7.4e-07  Score=68.57  Aligned_cols=85  Identities=28%  Similarity=0.343  Sum_probs=58.3

Q ss_pred             HHHHHhc-CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        248 PTLRQCS-GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       248 ~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      |.+.+.+ +|+++.+|..++.+++.+.        ..+.+|.+..+++|+++.||..|+.+|+.+..            +
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------------~   61 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD------------P   61 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH------------H
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------H
Confidence            4555555 7788888888887777432        24677888888888888888888888876532            4


Q ss_pred             hhHHHHHHhhCC-CCHHHHHHHHHHHH
Q psy14014        327 YILPYVKDLVAD-PNQHVKSALASVIM  352 (615)
Q Consensus       327 ~l~p~l~~~~~d-~~~~vR~~~~~~l~  352 (615)
                      ..+|.+.+++.+ .++.||..++.+|+
T Consensus        62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            466677776554 45566777777664

>KOG1820|consensus

Probab=98.49  E-value=6.1e-05  Score=80.18  Aligned_cols=193  Identities=14%  Similarity=0.139  Sum_probs=153.2

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--  360 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--  360 (615)
                      ..+-+.+...+.+++|.=|..|+..+...+..-. ......+.+.+...+.-...|.+..|-..++..|..++..++.  
T Consensus       252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~  330 (815)
T KOG1820|consen  252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF  330 (815)
T ss_pred             hhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence            4567778888899999999999999888777544 1122244566777777888999999999999999999988765  


Q ss_pred             hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC
Q psy14014        361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS  440 (615)
Q Consensus       361 ~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~  440 (615)
                      ..+...+.|.++..+.+....+|..+..++..+.+...-..+         .                  +.+..+++++
T Consensus       331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~---------~------------------~~I~e~lk~k  383 (815)
T KOG1820|consen  331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKM---------S------------------EAILEALKGK  383 (815)
T ss_pred             HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHH---------H------------------HHHHHHhcCC
Confidence            344556788999999998899999988888777663322111         1                  5778889999


Q ss_pred             CchHHHHHHHHhHHHHhhhCh----HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh
Q psy14014        441 KWRVRLAIIEYMPLLAGQLGV----EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA  503 (615)
Q Consensus       441 ~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~  503 (615)
                      ++++|......+.......++    ......+.|.+....+|.+.+||.+|..+++.+.+.+|...+
T Consensus       384 np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~  450 (815)
T KOG1820|consen  384 NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF  450 (815)
T ss_pred             ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999888887773    223467899999999999999999999999999999997643

>KOG2137|consensus

Probab=98.47  E-value=2.8e-05  Score=79.17  Aligned_cols=240  Identities=18%  Similarity=0.230  Sum_probs=161.3

Q ss_pred             CCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhc
Q psy14014        339 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQ  418 (615)
Q Consensus       339 ~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~  418 (615)
                      .++.-+..+.+.|..+...+........++|.+...+.+.  ...-..+..+-.+.+.                      
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~----------------------  340 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEG----------------------  340 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhc----------------------
Confidence            3455566666777666666666666777888887766432  0000000000000000                      


Q ss_pred             cccchhhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy14014        419 LGVEFFDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ  497 (615)
Q Consensus       419 ~~~~~~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~  497 (615)
                      .....|...+. |.+...++ ..+.+++-.+++.+..+.+.+.++.+.+.++|.+...++|.+..+.+.++..+..+++.
T Consensus       341 ~s~~~~~~~~~-p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~  419 (700)
T KOG2137|consen  341 LSQNEFGPKML-PALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES  419 (700)
T ss_pred             cchhhhhhhhh-HHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh
Confidence            01111122222 55555554 55667888889999999999999999999999999999999999999999999999998


Q ss_pred             hChHHhhhchhHHHHhh-hcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014        498 FGSEWAQSTVIPKVVAM-SRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       498 ~~~~~~~~~i~~~l~~~-~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~  576 (615)
                      +...+..+.|+|.+.++ ++..+..+|.+++.|++.+++.++..-+.+.++|++.. .+-.++.+......+...+.-..
T Consensus       420 iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~  498 (700)
T KOG2137|consen  420 IDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALII  498 (700)
T ss_pred             ccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhc
Confidence            87767778899999886 45678899999999999999888877677777776554 44557777777766666655332


Q ss_pred             h--hhhHHhhHHHHHhhhcCCCCccHHHHH
Q psy14014        577 E--TNVIQSQVKPALDKLNGDTDVDVKYFA  604 (615)
Q Consensus       577 ~--~~~~~~~~~~~l~~l~~d~d~~v~~~a  604 (615)
                      .  .....+.+.|.+--|..-+-..+.+++
T Consensus       499 ~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~  528 (700)
T KOG2137|consen  499 YSGVEVMAENVLPLLIPLSVAPSLNGEQYN  528 (700)
T ss_pred             ccceeeehhhhhhhhhhhhhcccccHHHHH
Confidence            2  245566677777666433334444443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.46  E-value=1.2e-05  Score=70.80  Aligned_cols=166  Identities=16%  Similarity=0.055  Sum_probs=116.0

Q ss_pred             CchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCc
Q psy14014        441 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNY  520 (615)
Q Consensus       441 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~  520 (615)
                      ++.+|..++.+++.++..++.  ..+..+|.+...|.|+++.||..|+.++..+... +.-.....++..++..+.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            356899999999999887764  3566888999999999999999999999999864 3222335566788888999999


Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCC-C----chHHHHHHHHHHHHhHhhh-hhhHHhhHHHHHhhhcC
Q psy14014        521 LHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDN-V----ANVRFNVAKTLQKIGPILE-TNVIQSQVKPALDKLNG  594 (615)
Q Consensus       521 ~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~-~----~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l~~  594 (615)
                      .+|..|..++..+....++..+.+.+.+.+..+-.-. .    +.-+..-...+..+...++ ++.-...+..++.++..
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~  157 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLN  157 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999988777766666666555543321 1    1223334444555555555 33334445555555533


Q ss_pred             ---CCCccHHHHHHHHHH
Q psy14014        595 ---DTDVDVKYFAQEAIS  609 (615)
Q Consensus       595 ---d~d~~v~~~a~~a~~  609 (615)
                         +.++.+...+..++.
T Consensus       158 ~~~~~~~~~~~d~~~~l~  175 (178)
T PF12717_consen  158 AVVDEDERVLRDILYCLS  175 (178)
T ss_pred             HcccccHHHHHHHHHHHH
Confidence               337777777766654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.44  E-value=0.00041  Score=73.27  Aligned_cols=371  Identities=14%  Similarity=0.171  Sum_probs=212.4

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMP  248 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~  248 (615)
                      ..++...+.-.| .+...|..++.....  ......+++.+.++++.++.++...++.++..++-.-...  .....++|
T Consensus       256 ~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~  334 (708)
T PF05804_consen  256 QTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVE  334 (708)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence            333344343444 445556666654322  3345679999999999888899998888888876443322  22345889


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHh--CccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAV--GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      .+.+++..++..++..+...|.+++..-  ...+....++|.+..+++|++  .|..++..|..++.  ..+.+.-...+
T Consensus       335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~--dd~~r~~f~~T  410 (708)
T PF05804_consen  335 KLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM--DDEARSMFAYT  410 (708)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc--CHhhHHHHhhc
Confidence            9999999888899999999998887421  122334468899999998764  45556666665554  22222223334


Q ss_pred             hhHHHHHHh-hCCCCHHHHHHHHHHHHhhchhhcc-hhh-hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHH
Q psy14014        327 YILPYVKDL-VADPNQHVKSALASVIMGLSPILGK-HNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWR  403 (615)
Q Consensus       327 ~l~p~l~~~-~~d~~~~vR~~~~~~l~~l~~~~g~-~~~-~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  403 (615)
                      ..+|.+.++ +..++.++...++..+.+++..-.. +.. ....++.+.+..-.....+-...++.++   ..-|.   .
T Consensus       411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS---~h~~~---~  484 (708)
T PF05804_consen  411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNIS---QHDGP---L  484 (708)
T ss_pred             chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHH---hcCch---H
Confidence            567877664 4456667766666666666543211 111 1123444443322211222222222222   11111   1


Q ss_pred             HHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh--ChHh--HH--HHHHHHHHHhcC
Q psy14014        404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL--GVEF--FD--EKLNALCMTWLV  477 (615)
Q Consensus       404 ~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~--~~--~~l~~~l~~~l~  477 (615)
                      +. .+.++++                  .+...+..++  --...+++++.++...  +.++  +.  ..++|.+.+.+.
T Consensus       485 k~-~f~~~i~------------------~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~  543 (708)
T PF05804_consen  485 KE-LFVDFIG------------------DLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK  543 (708)
T ss_pred             HH-HHHHHHH------------------HHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence            11 1122231                  2223333222  1245677777776432  2122  22  358888888876


Q ss_pred             Cc--chHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChh-hH--HHhhHH
Q psy14014        478 DH--VYAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPT-VT--ANFLLP  548 (615)
Q Consensus       478 d~--~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~-~~--~~~i~~  548 (615)
                      ..  ...+...++..+|.++..-..  -.....+++.+.++++..  +...-.-.++++..+..+-... .+  ...+..
T Consensus       544 ~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~  623 (708)
T PF05804_consen  544 PGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPA  623 (708)
T ss_pred             CCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHH
Confidence            43  345777777888877642111  112245788888877654  2333344666777776542211 11  245778


Q ss_pred             HHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        549 TVLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       549 ~l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                      .+..++.|+++.||..+-.+|.-+..+
T Consensus       624 ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  624 YLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999888754

>KOG1293|consensus

Probab=98.43  E-value=0.0016  Score=65.80  Aligned_cols=135  Identities=13%  Similarity=0.150  Sum_probs=104.1

Q ss_pred             CCchHHHHHHHHhHHHHhhh---ChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhhhchhHHHHh
Q psy14014        440 SKWRVRLAIIEYMPLLAGQL---GVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQSTVIPKVVA  513 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~  513 (615)
                      ++..++.+++..+..+....   ....-...+...+.+.+.|+...|..+++.++.+++-.||+   .+.....+..+..
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s  468 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES  468 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence            45557888888877776533   22233345666678888999999999999999999998876   3444568899999


Q ss_pred             hhcCCCchHHHHHHHHHHHHHhhhChhhHH----HhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        514 MSRDQNYLHRMTCLFCINVLAEACGPTVTA----NFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       514 ~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      +..++.+++|..+.+++..+.-.++..+..    ..-...+..+.+|++..|...+.+.|+++.-
T Consensus       469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            999999999999999999998776654421    2234456667899999999999999988854

>KOG1293|consensus

Probab=98.42  E-value=0.0019  Score=65.31  Aligned_cols=419  Identities=14%  Similarity=0.034  Sum_probs=214.1

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcChh-----hHHHhHH
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLSQS-----DVEQLVM  247 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~  247 (615)
                      .|.+.++.......++..+..-..   +......++.+.+++.+.+ ..++...+.++.++.+..+..     .....++
T Consensus        63 e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi  142 (678)
T KOG1293|consen   63 EDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSII  142 (678)
T ss_pred             cCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence            455666776666666665543221   2334556777788888777 889999999999888776432     1223455


Q ss_pred             HHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCcc-c-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccch-h--
Q psy14014        248 PTLRQCSGDT-SWRVRYMVADKFTDLQKAVGPE-I-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ-E--  321 (615)
Q Consensus       248 ~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~~-~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~--  321 (615)
                      +.+..+.+.+ ....+..+.. ....+..-..+ . ....+...+.-++......+|.+|...+..-+..+-+... .  
T Consensus       143 ~~~s~l~s~~lk~~~~l~~~~-~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~  221 (678)
T KOG1293|consen  143 VKFSLLYSIELKYISRLDVSR-AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMF  221 (678)
T ss_pred             HHHHHHHhhhhhhhhhhhhhh-hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHH
Confidence            5555444422 1112221111 01111000000 0 0112233333333444567788888888842222211110 0  


Q ss_pred             ---HHHHHhhHH--HHHHhhCCCCHHHHHHHHHHHHhhchhhc-chh------hh----hhhHHHH-HHhhcCCChhHHH
Q psy14014        322 ---NIIMTYILP--YVKDLVADPNQHVKSALASVIMGLSPILG-KHN------TV----DHLLPLF-LSQLKDECPEVRL  384 (615)
Q Consensus       322 ---~~~~~~l~p--~l~~~~~d~~~~vR~~~~~~l~~l~~~~g-~~~------~~----~~l~p~l-~~~l~d~~~~vr~  384 (615)
                         ......+.+  .+.++..|++..-|...+.++..+...-. .+.      +.    ..+.... ...+.++-+.--.
T Consensus       222 ~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~  301 (678)
T KOG1293|consen  222 LLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLD  301 (678)
T ss_pred             HHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehh
Confidence               011122333  34567788888888777777766543211 110      00    0111111 1112222111111


Q ss_pred             HHHHhhhHhhhhhchhHHHHHH-HHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHH---HHhhhC
Q psy14014        385 NIISNLDCVNEVIGIQQWRVRL-AIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPL---LAGQLG  460 (615)
Q Consensus       385 ~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~---l~~~~~  460 (615)
                      .+...++-..+....-...++. ...+.++.+            +   -+..-+.....+.|.-++.-...   ++...|
T Consensus       302 ~~~~l~c~~a~~~sklq~~~~e~~~~~~~~el------------l---f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~  366 (678)
T KOG1293|consen  302 HTNVLFCILARFASKLQLPQHEEATLKTTTEL------------L---FICASLAASDEKYRLILLNETLILNHLEYGLE  366 (678)
T ss_pred             hhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHH------------H---HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence            1111111111111110001110 000111100            0   01111223334444433332111   111111


Q ss_pred             h----HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC---hHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHH
Q psy14014        461 V----EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG---SEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVL  533 (615)
Q Consensus       461 ~----~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l  533 (615)
                      .    ++........++...-..+..++.+|+.++..+.....   ......++...+.+++.||+..+...+..++.++
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl  446 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL  446 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence            1    11112223333333344577888999998888776542   2223346778888888999999999999999998


Q ss_pred             HhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh----hHHhhHHHHHhhhcCCCCccHHHHHHH
Q psy14014        534 AEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQSQVKPALDKLNGDTDVDVKYFAQE  606 (615)
Q Consensus       534 ~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~l~~d~d~~v~~~a~~  606 (615)
                      .-.+++   .+........+..+..|+++++|..+.++|..+.-..+..    .........+..+.+|+|..|.+-+.+
T Consensus       447 Vmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fq  526 (678)
T KOG1293|consen  447 VMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQ  526 (678)
T ss_pred             HhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHH
Confidence            766554   3345678899999999999999999999999987544322    223334555666789999999999988


Q ss_pred             HHHHH
Q psy14014        607 AISSI  611 (615)
Q Consensus       607 a~~~~  611 (615)
                      -+..+
T Consensus       527 llRNl  531 (678)
T KOG1293|consen  527 LLRNL  531 (678)
T ss_pred             HHHHh
Confidence            87765

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.41  E-value=2.1e-06  Score=65.99  Aligned_cols=86  Identities=24%  Similarity=0.375  Sum_probs=69.6

Q ss_pred             HHHHHHhh-cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhh
Q psy14014        286 VQAFQMLL-KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV  364 (615)
Q Consensus       286 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~  364 (615)
                      +|.+.+.+ +|+++.+|..++..|+.+..            +..+|.+.++++|+++.||..++.+++.+..        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence            46677777 89999999999999995432            4678999999999999999999999998742        


Q ss_pred             hhhHHHHHHhhcCC-ChhHHHHHHHhhh
Q psy14014        365 DHLLPLFLSQLKDE-CPEVRLNIISNLD  391 (615)
Q Consensus       365 ~~l~p~l~~~l~d~-~~~vr~~a~~~l~  391 (615)
                      +..+|.+.+.+.++ +..||..|+.+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            45788889988764 5667999988764

>KOG0414|consensus

Probab=98.39  E-value=0.0062  Score=65.88  Aligned_cols=159  Identities=13%  Similarity=0.097  Sum_probs=115.6

Q ss_pred             HHHHhHHHHh---hhChHhHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCC
Q psy14014        448 IIEYMPLLAG---QLGVEFFDEKLNALCMTWLVD----HVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQN  519 (615)
Q Consensus       448 ~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d----~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~  519 (615)
                      ..+.+..++.   .+|++.....+.|.+...+..    .++.++.+|.-+++.+... +.+ +...-+|.+...++ .++
T Consensus       897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~  974 (1251)
T KOG0414|consen  897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPS  974 (1251)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCC
Confidence            4455555554   346555667788888887743    4688999999999998753 333 44566888888665 899


Q ss_pred             chHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCcc
Q psy14014        520 YLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVD  599 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~  599 (615)
                      +.+|.+++-++|.++-.++.  +.+...+.|.+.+.|+++.||.++..+|..++-. +--....++-.+..+ +.|+++.
T Consensus       975 p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKVKGql~eMA~c-l~D~~~~ 1050 (1251)
T KOG0414|consen  975 PRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKVKGQLSEMALC-LEDPNAE 1050 (1251)
T ss_pred             ceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHhcccHHHHHHH-hcCCcHH
Confidence            99999999999999865542  2355678888899999999999999999998742 111112234444444 4899999


Q ss_pred             HHHHHHHHHHHHh
Q psy14014        600 VKYFAQEAISSIA  612 (615)
Q Consensus       600 v~~~a~~a~~~~~  612 (615)
                      ++..|..-++-+.
T Consensus      1051 IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELS 1063 (1251)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999997777654

>KOG2274|consensus

Probab=98.39  E-value=0.005  Score=64.62  Aligned_cols=175  Identities=11%  Similarity=0.050  Sum_probs=110.0

Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh---hhchhHHHHh
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA---QSTVIPKVVA  513 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~  513 (615)
                      ..+...-+|..++..+...++.---..+.+.++..+.++..+...++-..-.++++.+++. .+++.   ...+.|-+..
T Consensus       500 ~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~  578 (1005)
T KOG2274|consen  500 TMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTIN  578 (1005)
T ss_pred             ccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHH
Confidence            3466667888888877666532211224567777778888888888888888888887764 33322   2447776666


Q ss_pred             hh--cCCCchHHHHHHHHHHHHHh---hhChhhHHHhhHHHHHhhCCCCC----chHHHHHHHHHHHHhHhhhhh---hH
Q psy14014        514 MS--RDQNYLHRMTCLFCINVLAE---ACGPTVTANFLLPTVLNMAGDNV----ANVRFNVAKTLQKIGPILETN---VI  581 (615)
Q Consensus       514 ~~--~d~~~~~R~~a~~~l~~l~~---~~~~~~~~~~i~~~l~~~~~D~~----~~vr~~a~~~l~~l~~~~~~~---~~  581 (615)
                      .+  ...+|.+-..+-.++..+..   +.|+  ..+..+|.+..-+.-++    +.....++..|..+...-+++   .+
T Consensus       579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l  656 (1005)
T KOG2274|consen  579 LFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL  656 (1005)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH
Confidence            32  23344554445455555544   2332  35677888887665444    445556677777676655432   33


Q ss_pred             H-hhHHHHHhhhcCCCCccHHHHHHHHHHHHhhc
Q psy14014        582 Q-SQVKPALDKLNGDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       582 ~-~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      . ..+.++.+..++..|-.+-+++.++++.+-++
T Consensus       657 ~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  657 ICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            3 34555556667888999999999999987654

>KOG0567|consensus

Probab=98.35  E-value=4.9e-05  Score=67.70  Aligned_cols=233  Identities=16%  Similarity=0.220  Sum_probs=137.2

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC--CCHHHHHHHHHHHHhhchhhcchhh
Q psy14014        286 VQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD--PNQHVKSALASVIMGLSPILGKHNT  363 (615)
Q Consensus       286 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d--~~~~vR~~~~~~l~~l~~~~g~~~~  363 (615)
                      +..+.+...|.....+...+..|+++..            ...+|.+...+.|  ..+.||..++++++.+..       
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~------------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------   98 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQD------------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------   98 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhcc------------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------
Confidence            4445555555555556667777776544            4467777776665  468999999999988752       


Q ss_pred             hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHH-HHhhhhhhhhccccc-hhhhhhhhHHHHHhhhcCC
Q psy14014        364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLA-IIEYMPLLAGQLGVE-FFDEKLNALSIVELAEDSK  441 (615)
Q Consensus       364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-i~~~l~~l~~~~~~~-~~~~~l~~~~i~~~~~~~~  441 (615)
                       +...+.+.+..+|+..+|+..+.-++..+-       |....+ +.+..|..+..-... -+.+ +  ..+...+.|.+
T Consensus        99 -~~~~~~l~k~~~dp~~~v~ETc~lAi~rle-------~~~~~~~~~~~~p~~SvdPa~p~~~ss-v--~~lr~~lld~t  167 (289)
T KOG0567|consen   99 -PESLEILTKYIKDPCKEVRETCELAIKRLE-------WKDIIDKIANSSPYISVDPAPPANLSS-V--HELRAELLDET  167 (289)
T ss_pred             -hhhHHHHHHHhcCCccccchHHHHHHHHHH-------HhhccccccccCccccCCCCCcccccc-H--HHHHHHHHhcc
Confidence             235677777778888888887666665542       222110 000011111000000 0000 0  11122222211


Q ss_pred             c--hHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC--
Q psy14014        442 W--RVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD--  517 (615)
Q Consensus       442 ~--~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--  517 (615)
                      .  --|..+.-.+..+    |.+    .-+..+.+.+.+++.-.|..+..++|++-.        +.-+|.|.+.+.|  
T Consensus       168 ~~l~~Ry~amF~LRn~----g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~  231 (289)
T KOG0567|consen  168 KPLFERYRAMFYLRNI----GTE----EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDET  231 (289)
T ss_pred             hhHHHHHhhhhHhhcc----CcH----HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhh
Confidence            1  1122333333222    222    233445666777788889998888888742        3456777776654  


Q ss_pred             CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHH
Q psy14014        518 QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI  572 (615)
Q Consensus       518 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l  572 (615)
                      .++.+|..|+.+||.++.        +..++.|.+++.|+++-||..+.-+|..+
T Consensus       232 E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  232 EHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             cchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            488899999999999862        34678888889999999998888877655

>KOG0168|consensus

Probab=98.35  E-value=0.0013  Score=68.18  Aligned_cols=154  Identities=10%  Similarity=0.023  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHhCC-CChHHHHHHHHhHHHHHHHhchhh---hHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcCh
Q psy14014        165 KAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       165 ~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      .+.+.|.+..++++ .++++...||+++..+++.++...   .....+|+|.+-+. =+.-.|.+.+++++..+.+.=+.
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~  288 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK  288 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence            46677888888877 578999999999999999987632   23457777765443 35667899999999998877666


Q ss_pred             hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        240 SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       240 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                      ......-+-.+..+++-=+..+.+.++....+.+..+..+..  .-+.+|+|..+++..+..+-+.++-++..++..+..
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h  368 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH  368 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence            544443333344444333445667777677777777665532  347889999999999988888899999888887654


Q ss_pred             c
Q psy14014        318 Y  318 (615)
Q Consensus       318 ~  318 (615)
                      .
T Consensus       369 ~  369 (1051)
T KOG0168|consen  369 G  369 (1051)
T ss_pred             C
Confidence            3

>KOG1992|consensus

Probab=98.34  E-value=0.0059  Score=63.41  Aligned_cols=172  Identities=15%  Similarity=0.209  Sum_probs=102.8

Q ss_pred             cCCchHHHHHHHHhHHHHhhh-----C----------hHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh
Q psy14014        439 DSKWRVRLAIIEYMPLLAGQL-----G----------VEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA  503 (615)
Q Consensus       439 ~~~~~vr~~~~~~l~~l~~~~-----~----------~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~  503 (615)
                      +.+|+-+..++..+..++...     |          .++|...+.|.+..-=..+.+-+|..+++-+..+-+.+|+...
T Consensus       417 S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l  496 (960)
T KOG1992|consen  417 SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL  496 (960)
T ss_pred             CccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH
Confidence            468999988888888887542     1          2345555666554433345677888888887777777776633


Q ss_pred             hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh--------hhHHHhhHHHHHhh---CCCCCchHHHHHHHHHHHH
Q psy14014        504 QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP--------TVTANFLLPTVLNM---AGDNVANVRFNVAKTLQKI  572 (615)
Q Consensus       504 ~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~---~~D~~~~vr~~a~~~l~~l  572 (615)
                       -..+|.+.+.++.+++.+...|+.++..+.-..+.        ....+++.+.+..+   ++-+...=-...++++-++
T Consensus       497 -m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRi  575 (960)
T KOG1992|consen  497 -MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRI  575 (960)
T ss_pred             -HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHH
Confidence             35899999999999999999999999988654333        22233333333333   3323333334566666666


Q ss_pred             hHhhhh------hhHHhhHHHHHhhh-cCCCCccHHHHHHHHHHHH
Q psy14014        573 GPILET------NVIQSQVKPALDKL-NGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       573 ~~~~~~------~~~~~~~~~~l~~l-~~d~d~~v~~~a~~a~~~~  611 (615)
                      +.....      +.....+..++... .|-.++.--.+-.+.++.+
T Consensus       576 i~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~l  621 (960)
T KOG1992|consen  576 ISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLL  621 (960)
T ss_pred             HHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Confidence            544321      11223333333333 3555666666655555544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.33  E-value=3.2e-06  Score=69.52  Aligned_cols=108  Identities=12%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC---hHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh--
Q psy14014        466 EKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG---SEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT--  540 (615)
Q Consensus       466 ~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~--  540 (615)
                      ..+++.+.+++.+.++.+|..++.+++.++....   .......++|.+.+++.++++.+|..++.++++++...+..  
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            3467778888888889999999999999886421   12233468899999999999999999999999998654321  


Q ss_pred             h-HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        541 V-TANFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       541 ~-~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      . ....+++.+.+++.+.+..+|..++.+|.+++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            1 23457888888888888999999999988875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.32  E-value=8.5e-05  Score=65.42  Aligned_cols=108  Identities=20%  Similarity=0.224  Sum_probs=75.1

Q ss_pred             ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCCh
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW  259 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~  259 (615)
                      ++.||..++.++|.++...+.  ..+..+|.+...++|+++.||+.|+.++..+... +.-.....++..+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            467888888888888877654  3455677888888888899999888888877543 1112233455666677788888


Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHH
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQ  290 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  290 (615)
                      .||..+...|..+.....++.....+.+.+.
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~  108 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELIS  108 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            8999888888888876544443334444333

>KOG2062|consensus

Probab=98.28  E-value=8e-05  Score=75.57  Aligned_cols=263  Identities=16%  Similarity=0.119  Sum_probs=155.9

Q ss_pred             chhhhhhhcCCc-H-HHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhH
Q psy14014         53 LIPFLTETIYDE-D-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF  130 (615)
Q Consensus        53 ll~~l~~~~~~~-~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  130 (615)
                      ...+|.+.+++. + .||..++--||-..  +|.  .-..+...++..+-.++...-++|.-+++-++---....    .
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGS--a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~e----a  485 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAG--MGS--ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQE----A  485 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchh--ccc--ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHH----H
Confidence            344444444433 3 48888876666432  221  224566667777777777777777777776543322221    1


Q ss_pred             HHHHHHhhcCCCc--chhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhH
Q psy14014        131 VPLVQRLASGDWF--TSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII  208 (615)
Q Consensus       131 l~~l~~l~~~~~~--~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll  208 (615)
                      +.-+...+++...  -.|-.+..+-...+..     +++--+++.+++.|.++..|..-.-.++.-...-+.    ...+
T Consensus       486 iedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-----qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn----nkai  556 (929)
T KOG2062|consen  486 IEDMLTYAQETQHEKIIRGLAVGIALVVYGR-----QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN----NKAI  556 (929)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-----hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc----hhhH
Confidence            2222333333321  2333333332222222     123346678889999999999866654432111122    2233


Q ss_pred             HHHHH-hhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhCccchhhhHH
Q psy14014        209 PMFVN-LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC-SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLV  286 (615)
Q Consensus       209 ~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  286 (615)
                      .-++. ..+|.++.||++|+.+++-++-.      .+...|-..++ .++-++.||+.++.+||-.+..-|.    ...+
T Consensus       557 r~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi  626 (929)
T KOG2062|consen  557 RRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAI  626 (929)
T ss_pred             HHhhcccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHH
Confidence            33333 36899999999999998865422      12233444444 4456899999999999998887764    4677


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHH
Q psy14014        287 QAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVK  344 (615)
Q Consensus       287 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR  344 (615)
                      .++..+.+|+..-||+.|+-+++-+.-...+...  .-...+...+.+.+.|.+...-
T Consensus       627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~--pkv~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC--PKVNGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC--chHHHHHHHHHHHhhhhhhHHH
Confidence            7888889999999999999999887654333221  1134455556667777666543

>KOG2032|consensus

Probab=98.27  E-value=0.0054  Score=60.06  Aligned_cols=260  Identities=17%  Similarity=0.149  Sum_probs=154.2

Q ss_pred             HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHHHHhh-cCCChhHHHHHHHhhhHhhhhhchh
Q psy14014        324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQL-KDECPEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~  400 (615)
                      .+..++-.+.+-..|++..+|..++..|++.+.....+  .....++..++..| .+.+.+|...++++|..+.+.....
T Consensus       255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~  334 (533)
T KOG2032|consen  255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND  334 (533)
T ss_pred             cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence            34556666777789999999999999999998763321  22344555555544 4557899999999999887765443


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHH---HHH
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNAL---CMT  474 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~---l~~  474 (615)
                      +.....     +             +.-  -.+..+..+.+..+|.+++..++.+++..|.   ++|.+.+...   +.-
T Consensus       335 ~l~~~~-----l-------------~ia--lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lll  394 (533)
T KOG2032|consen  335 DLESYL-----L-------------NIA--LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLL  394 (533)
T ss_pred             chhhhc-----h-------------hHH--HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccccee
Confidence            332211     1             111  2455677888999999999999999987765   3444444422   233


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHH--HHHHHHhhhChhhHHHhhHHHHHh
Q psy14014        475 WLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLF--CINVLAEACGPTVTANFLLPTVLN  552 (615)
Q Consensus       475 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~--~l~~l~~~~~~~~~~~~i~~~l~~  552 (615)
                      .++|+++.+-.+.-.    ....+++....+.....+.+.+ |.... |..+..  +.-.+. .+-++. .-........
T Consensus       395 hl~d~~p~va~ACr~----~~~~c~p~l~rke~~~~~q~~l-d~~~~-~~q~Fyn~~c~~L~-~i~~d~-l~~~~t~~~~  466 (533)
T KOG2032|consen  395 HLQDPNPYVARACRS----ELRTCYPNLVRKELYHLFQESL-DTDMA-RFQAFYNQWCIQLN-HIHPDI-LMLLLTEDQH  466 (533)
T ss_pred             eeCCCChHHHHHHHH----HHHhcCchhHHHHHHHHHhhhh-HHhHH-HHHHHHHHHHHHHh-hhCHHH-HHHHHHhchh
Confidence            478888876444333    3334444433332222222222 21111 222111  111111 111111 1122222233


Q ss_pred             hCCCCCchHHHHHHHHHHHHhHhhhh----hhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        553 MAGDNVANVRFNVAKTLQKIGPILET----NVIQSQVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       553 ~~~D~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                      +.+..-+.||..+..--.+..-+...    ......+...+..|..|+-++|+..|.+|++.+
T Consensus       467 ~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l  529 (533)
T KOG2032|consen  467 IFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL  529 (533)
T ss_pred             heecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence            45677778888777666555443322    234566788888899999999999999999875

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.26  E-value=5.9e-06  Score=67.91  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---
Q psy14014        505 STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---  578 (615)
Q Consensus       505 ~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~---  578 (615)
                      ..+++.+.+++.++++.+|..++.+++.++...+.   ......++|.+.+++.|+++.++..++.+|+++....+.   
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            34889999999999999999999999999865222   223458899999999999999999999999999865432   


Q ss_pred             hhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        579 NVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       579 ~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ......+.+.+.+++.+.+.++++.|..++..+.+
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            12334467777777788899999999999988764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.26  E-value=8.9e-05  Score=68.51  Aligned_cols=188  Identities=13%  Similarity=0.138  Sum_probs=127.5

Q ss_pred             HHHHHhC-CCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHH
Q psy14014        171 HFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM  247 (615)
Q Consensus       171 ~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  247 (615)
                      .+..+++ ..++.++..+.-+++..+..-...  ......++.+..++.++++.+|..|+.++..++.........+..+
T Consensus        16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i   95 (254)
T PF04826_consen   16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI   95 (254)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence            3444444 578999999999999876533222  2334689999999999999999999999998876655543333334


Q ss_pred             HHHHH-hcCCC-ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        248 PTLRQ-CSGDT-SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       248 ~~l~~-~~~d~-~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      +.+.+ ...++ +..+..++...|..+...-..+......+|.+..++...+..+|..+++.|..+...  +....+.+.
T Consensus        96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~Ll~  173 (254)
T PF04826_consen   96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTRELLS  173 (254)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHHHh
Confidence            44433 44433 567888888988888643322223345677788889888889999999999888763  222223444


Q ss_pred             HhhHHHHHHhhCCC-CHHHHHHHHHHHHhhchhhcc
Q psy14014        326 TYILPYVKDLVADP-NQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       326 ~~l~p~l~~~~~d~-~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      .+.++.+..+++.. +..+-..++..+.++...+.+
T Consensus       174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~  209 (254)
T PF04826_consen  174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK  209 (254)
T ss_pred             ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence            55666666777654 566667777777777665544

>KOG2032|consensus

Probab=98.26  E-value=0.00011  Score=71.24  Aligned_cols=251  Identities=19%  Similarity=0.171  Sum_probs=140.2

Q ss_pred             cCCcHH-HHHHHHHHhccccCCCCC--cchhhhchH-HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHH
Q psy14014         61 IYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLP-PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR  136 (615)
Q Consensus        61 ~~~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~-~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~  136 (615)
                      ..|++. +|..++.+|+..+....+  -.|.+.++. ++..+..+.+.+|...++.+|..+.+.....+++.+++++-.+
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr  346 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR  346 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence            345554 888899999888875332  123344443 3455666667788888888888888887777777777665432


Q ss_pred             hhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchh---hh----HhhhHH
Q psy14014        137 LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YL----KTDIIP  209 (615)
Q Consensus       137 l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~----~~~ll~  209 (615)
                                                         +..+..|.++.+|.++...+|.+++..+..   .+    ...+.|
T Consensus       347 -----------------------------------lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~  391 (533)
T KOG2032|consen  347 -----------------------------------LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP  391 (533)
T ss_pred             -----------------------------------HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc
Confidence                                               245567788899999999999998877642   11    122223


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHH-HHHH-HHHHHHHhCccchhhhHHH
Q psy14014        210 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYM-VADK-FTDLQKAVGPEITKTDLVQ  287 (615)
Q Consensus       210 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~-~~~~-l~~l~~~~~~~~~~~~l~~  287 (615)
                      ++. .++|+++.|-.++-..+....+++..+....    ++.+.+ |.... |.. ..+. .-.+....+ + ..--+..
T Consensus       392 lll-hl~d~~p~va~ACr~~~~~c~p~l~rke~~~----~~q~~l-d~~~~-~~q~Fyn~~c~~L~~i~~-d-~l~~~~t  462 (533)
T KOG2032|consen  392 LLL-HLQDPNPYVARACRSELRTCYPNLVRKELYH----LFQESL-DTDMA-RFQAFYNQWCIQLNHIHP-D-ILMLLLT  462 (533)
T ss_pred             cee-eeCCCChHHHHHHHHHHHhcCchhHHHHHHH----HHhhhh-HHhHH-HHHHHHHHHHHHHhhhCH-H-HHHHHHH
Confidence            222 3578888887776666655555544433222    221112 22111 110 1111 001111100 0 0001112


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy14014        288 AFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS  355 (615)
Q Consensus       288 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~  355 (615)
                      ...-+++...+.||.++....+.+..++............+...+..+..|+-+.++..+.++++.+.
T Consensus       463 ~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  463 EDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             hchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            22234455566788887777776666554332222234445556666777777888877777776543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.20  E-value=9.4e-05  Score=68.33  Aligned_cols=216  Identities=15%  Similarity=0.091  Sum_probs=141.3

Q ss_pred             hHHHHHHhhc-CCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014        367 LLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR  445 (615)
Q Consensus       367 l~p~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr  445 (615)
                      -+..+..+|+ .+++.+++.+.-+++........    +..     +    ...|.        .+.+..++.+++..+|
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n----q~~-----I----r~~Gg--------i~lI~~lL~~p~~~vr   71 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN----QDI-----I----RDLGG--------ISLIGSLLNDPNPSVR   71 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH----HHH-----H----HHcCC--------HHHHHHHcCCCChHHH
Confidence            3456677776 45788999888887765332111    110     1    01110        1678889999999999


Q ss_pred             HHHHHHhHHHHhhhChHhHHHHHHHHHHHh-cCC-cchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHH
Q psy14014        446 LAIIEYMPLLAGQLGVEFFDEKLNALCMTW-LVD-HVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR  523 (615)
Q Consensus       446 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R  523 (615)
                      ..++.++..++........-...++.+.+. ..+ -+..+..++++.|..+.-...........+|.+..++..++..+|
T Consensus        72 ~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k  151 (254)
T PF04826_consen   72 EKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTK  151 (254)
T ss_pred             HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHH
Confidence            999999998866543322222334444443 333 367888999999998864322222223468888899999999999


Q ss_pred             HHHHHHHHHHHhhhC--hhhHHHhhHHHHHhhCCCC-CchHHHHHHHHHHHHhHhhhhh---------------hH---H
Q psy14014        524 MTCLFCINVLAEACG--PTVTANFLLPTVLNMAGDN-VANVRFNVAKTLQKIGPILETN---------------VI---Q  582 (615)
Q Consensus       524 ~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~D~-~~~vr~~a~~~l~~l~~~~~~~---------------~~---~  582 (615)
                      ..+++++..+++.-.  .+.+..+.+..+..+.+.. ..++...+...+.++...+..+               ..   .
T Consensus       152 ~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~  231 (254)
T PF04826_consen  152 VQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGES  231 (254)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccH
Confidence            999999999986532  2334456777777777654 6788889999999997765421               01   1


Q ss_pred             hhHHHHHhhhcCCCCccHHHH
Q psy14014        583 SQVKPALDKLNGDTDVDVKYF  603 (615)
Q Consensus       583 ~~~~~~l~~l~~d~d~~v~~~  603 (615)
                      +.+..-+..|...+|++||..
T Consensus       232 ~~~~~~l~~l~~h~d~ev~~~  252 (254)
T PF04826_consen  232 SQLAKKLQALANHPDPEVKEQ  252 (254)
T ss_pred             HHHHHHHHHHHcCCCHHHhhh
Confidence            223444445568899999975

>KOG0567|consensus

Probab=98.20  E-value=0.00074  Score=60.45  Aligned_cols=188  Identities=18%  Similarity=0.163  Sum_probs=126.5

Q ss_pred             HHHHHHhC--CCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh------
Q psy14014        170 SHFRNLCQ--DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD------  241 (615)
Q Consensus       170 ~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~------  241 (615)
                      |.+...+.  +..+.||..++++|+.+.        ....++++.++.+|+-..||+.+..++..+-..-..+.      
T Consensus        70 ~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p  141 (289)
T KOG0567|consen   70 PVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSP  141 (289)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCc
Confidence            44444444  457889999999999985        34678888888899999999988777776543221111      


Q ss_pred             HH------H---hHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14014        242 VE------Q---LVMPTLRQCSGDTSW--RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRD  310 (615)
Q Consensus       242 ~~------~---~l~~~l~~~~~d~~~--~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  310 (615)
                      +.      +   .-+.-+...+.|...  .-|+.+.-.|.++        ..+.-+-.+.+.+.++..-.|..++..+|+
T Consensus       142 ~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--------g~EeaI~al~~~l~~~SalfrhEvAfVfGQ  213 (289)
T KOG0567|consen  142 YISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--------GTEEAINALIDGLADDSALFRHEVAFVFGQ  213 (289)
T ss_pred             cccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--------CcHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence            00      0   011112222222211  1233222222221        124567778888888888899999999988


Q ss_pred             HHhhccccchhHHHHHhhHHHHHHhhCC--CCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHH
Q psy14014        311 FCQNLDAYNQENIIMTYILPYVKDLVAD--PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS  388 (615)
Q Consensus       311 ~~~~~~~~~~~~~~~~~l~p~l~~~~~d--~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~  388 (615)
                      +-.            +..+|.+.+.+.|  +++.||..++++|+.++.        +.-++.+.+.+.|+.+-||+.+.-
T Consensus       214 l~s------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~v  273 (289)
T KOG0567|consen  214 LQS------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEV  273 (289)
T ss_pred             ccc------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHH
Confidence            755            4567888887765  578999999999998764        346788999999999999999988


Q ss_pred             hhhHh
Q psy14014        389 NLDCV  393 (615)
Q Consensus       389 ~l~~l  393 (615)
                      +|+..
T Consensus       274 aldm~  278 (289)
T KOG0567|consen  274 ALDML  278 (289)
T ss_pred             HHHHH
Confidence            87644

>KOG1077|consensus

Probab=98.19  E-value=0.011  Score=60.37  Aligned_cols=293  Identities=13%  Similarity=0.073  Sum_probs=159.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-H-HHHHHHHHhccccCCCCCcchhhhch
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~-vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      |..+.+.+.|.|+..-.-|++.++.+...-..+.+...+-.+|   .+.+. . ||+.++-||-.+.+.-.+......-.
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlL---vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~  189 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLL---VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWA  189 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHH---hCCcchHHHHHHHHHHHHHHHhcCccccChhhHH
Confidence            4555667778888877788888888743222222222232222   23333 3 99999999988887543322223334


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHh---hcC--CC-----------cchhhhHHhhhhhh
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRL---ASG--DW-----------FTSRTSACGLFSVC  156 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l---~~~--~~-----------~~~r~~a~~~l~~~  156 (615)
                      ..+..+++|.+-.|-.++..-+..+++..+++... -+.+.+.++   +..  .+           +.-....++++...
T Consensus       190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~  268 (938)
T KOG1077|consen  190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY  268 (938)
T ss_pred             HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence            45677778999889889988888888888764322 222222222   111  00           00011122222222


Q ss_pred             ccCCChhhHHH---HHHHHHHHhCC--CChHHHHH-----HHHhHHHHHHHhch-hhhHhhhHHHHHHhhccCchhHHHH
Q psy14014        157 YPRVTAGVKAE---LRSHFRNLCQD--DTPMVRRA-----AAGKLGELAKVVEV-DYLKTDIIPMFVNLAQDEQDSVRLL  225 (615)
Q Consensus       157 ~~~~~~~~~~~---l~~~l~~l~~d--~~~~vR~~-----a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vr~~  225 (615)
                      -..-.+..+..   +++.++...++  .+..|.+.     ++--...++-+... ......-...+-+++.+.+..+|..
T Consensus       269 p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL  348 (938)
T KOG1077|consen  269 PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL  348 (938)
T ss_pred             CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhh
Confidence            11111222222   22222222221  11122221     22222222222222 2223344455566677888888888


Q ss_pred             HHHHHHHHHhhcChhhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHH
Q psy14014        226 AVEACVSIASLLSQSDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAA  304 (615)
Q Consensus       226 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  304 (615)
                      |++.+..++..-...+...+-...+...++ +++..+|+.+++.|..++..-.    ...++.-+++.+...++.+|+..
T Consensus       349 aLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  349 ALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEI  424 (938)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHH
Confidence            888888777653322222222455555555 8888899999998888875422    34677777788888888888877


Q ss_pred             HHHHHHHHhhc
Q psy14014        305 ANKVRDFCQNL  315 (615)
Q Consensus       305 ~~~l~~~~~~~  315 (615)
                      +....-+.+.+
T Consensus       425 vlKvAILaEKy  435 (938)
T KOG1077|consen  425 VLKVAILAEKY  435 (938)
T ss_pred             HHHHHHHHHHh
Confidence            76666666544

>KOG4653|consensus

Probab=98.18  E-value=0.00032  Score=72.73  Aligned_cols=212  Identities=12%  Similarity=0.091  Sum_probs=151.8

Q ss_pred             hhhhcCchhHHHHHHHHHHHHHHhhcCh--hHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHH
Q psy14014         96 ESLATVEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (615)
Q Consensus        96 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~  173 (615)
                      ...+.|+...+|-.++..+..+.+.-.+  -.....++.....+..|++..+-..|+..+..++...++.+.+.+...+.
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~  812 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYL  812 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3345677788999999999998885433  23345678888888888888888888888888888877777777777666


Q ss_pred             HHhCCCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcC---hhhHHHhHHH
Q psy14014        174 NLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS---QSDVEQLVMP  248 (615)
Q Consensus       174 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~  248 (615)
                      ..-....++.|-.+.++++.+++..|+-  .+...++..+.....|++...|..++..++.++....   .+. ...++.
T Consensus       813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~-~~ev~~  891 (982)
T KOG4653|consen  813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF-FHEVLQ  891 (982)
T ss_pred             hcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence            6555555677777889999999888762  3455788888888889988999999999999887665   332 223333


Q ss_pred             HHHH-hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh------------cCCcHHHHHHHHHHHHHHHh
Q psy14014        249 TLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL------------KDSEAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       249 ~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------------~d~~~~vr~~a~~~l~~~~~  313 (615)
                      .+.. .-.|.+..+|++|+..+..+....|.     .++|++...+            .+.+..+|..|..++..+-.
T Consensus       892 ~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~-----dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a  964 (982)
T KOG4653|consen  892 LILSLETTDGSVLVRRAAVHLLAELLNGTGE-----DLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA  964 (982)
T ss_pred             HHHHHHccCCchhhHHHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            3333 34688999999999999998887774     3445443222            24445566666666665444

>KOG4413|consensus

Probab=98.17  E-value=0.0059  Score=56.40  Aligned_cols=282  Identities=14%  Similarity=0.107  Sum_probs=156.4

Q ss_pred             HHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh--------hHHHHHHHHHHHhCCCCh
Q psy14014        110 AVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--------VKAELRSHFRNLCQDDTP  181 (615)
Q Consensus       110 a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--------~~~~l~~~l~~l~~d~~~  181 (615)
                      .+.++.++.+...+.++.+.++|.+++-...++..++..+++.++.+.+....+        ...++++++..++..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            555666666666566666777888877666677778888888888777766532        135678888888899999


Q ss_pred             HHHHHHHHhHHHHHHHhch--hhhHhhhHHH--HHHhhccCchhHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHhc
Q psy14014        182 MVRRAAAGKLGELAKVVEV--DYLKTDIIPM--FVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQCS  254 (615)
Q Consensus       182 ~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~--l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~  254 (615)
                      +|.+++.+.+..++..-..  ..+.++++.-  +..+.--.++.+|...++.+..+.+..+.   +...+.++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            9999999999888753110  0011111110  01111122445565555655555544332   122334666665555


Q ss_pred             CC-CChHHHHHHHHHHHHHHHHhC-ccch-hhhHHHHHHHhhc--CCcHHHHHHHHHHHHHHHhhccccchh----HHHH
Q psy14014        255 GD-TSWRVRYMVADKFTDLQKAVG-PEIT-KTDLVQAFQMLLK--DSEAEVRAAAANKVRDFCQNLDAYNQE----NIIM  325 (615)
Q Consensus       255 ~d-~~~~vR~~~~~~l~~l~~~~~-~~~~-~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~  325 (615)
                      +. .+.-||..+++....++..-. .+.. ...++..+...+.  |++|--+   ++++..+.+.++++...    +...
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfek---fralmgfgkffgkeaimdvseeaic  299 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEK---FRALMGFGKFFGKEAIMDVSEEAIC  299 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHH---HHHHHHHHHHhcchHHhhcCHHHHH
Confidence            54 677789999988888875422 2211 1245555544442  3333222   33455555555554321    1112


Q ss_pred             Hhh---HHHHHHhhCCCCHHHHHHHHHHHHhhchhhc-chhhhhhhHHHHHHh---hcCCChh-HHHHHHHhhhHhh
Q psy14014        326 TYI---LPYVKDLVADPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQ---LKDECPE-VRLNIISNLDCVN  394 (615)
Q Consensus       326 ~~l---~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g-~~~~~~~l~p~l~~~---l~d~~~~-vr~~a~~~l~~l~  394 (615)
                      +.+   +.-..+++...++....+++.+++.++.... .+.....--|.+.++   .-|.+.. -+..++.+|..+.
T Consensus       300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            222   2222345667788888999999998876543 332222222333333   2344332 3445566665554

>KOG2956|consensus

Probab=98.16  E-value=0.00027  Score=68.33  Aligned_cols=194  Identities=15%  Similarity=0.147  Sum_probs=132.6

Q ss_pred             HHHHHHHhhcCCCcchhhhHHh-hhhhhccCC-C--hhhHHHHHHHHHHHhCC-CChHHHHHHHHhHHHHHHHhchhh--
Q psy14014        130 FVPLVQRLASGDWFTSRTSACG-LFSVCYPRV-T--AGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDY--  202 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~~a~~-~l~~~~~~~-~--~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~--  202 (615)
                      +...+..+.++.....|..|.. +...++..- +  ++...+|+..+.+.+.| .++..|+.|++.|..++..-+...  
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            4555556666656667777776 444444332 1  45566777777888888 889999999999999998755432  


Q ss_pred             hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--
Q psy14014        203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--  280 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--  280 (615)
                      .....+.-+++..+|.+++|-..|.+.+..+.....+......+.|.+..    .+...--++++.+.++...+..+.  
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~  443 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELL  443 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHH
Confidence            23344555677778888877666666655544444444445556666654    344445567777788777666543  


Q ss_pred             -hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHh
Q psy14014        281 -TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDL  335 (615)
Q Consensus       281 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~  335 (615)
                       ..+.+.|.+++........||+.|+.+|..+...++.        +.+-|+|..+
T Consensus       444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~--------~~mePhL~~L  491 (516)
T KOG2956|consen  444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM--------EEMEPHLEQL  491 (516)
T ss_pred             HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH--------HhhhhHhhhc
Confidence             2467899999999999999999999999999887652        4466776654

>KOG0413|consensus

Probab=98.14  E-value=0.018  Score=60.94  Aligned_cols=172  Identities=14%  Similarity=0.132  Sum_probs=107.0

Q ss_pred             cCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCC
Q psy14014        439 DSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQ  518 (615)
Q Consensus       439 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~  518 (615)
                      .....+|.-.+-+++.++..+..  .-+..+|.+-..|.|+..-||..++..+..+... |--.+...++=++.-.+-|.
T Consensus       980 ~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~ 1056 (1529)
T KOG0413|consen  980 NTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTIILLARLLQF-GIVKWNGELFIRFMLALLDA 1056 (1529)
T ss_pred             hhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHccc
Confidence            34455666666666666653321  2466788888899999999999999998888763 32223344555555567789


Q ss_pred             CchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhh-----------------------CCCCCchHHHHHHHHHHHHhHh
Q psy14014        519 NYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNM-----------------------AGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       519 ~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~-----------------------~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                      ++.+|.-+=.+++.+...-.|.+|...+...+..+                       +.-.++.-|..-++...-+..+
T Consensus      1057 ~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~ 1136 (1529)
T KOG0413|consen 1057 NEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDS 1136 (1529)
T ss_pred             CHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHh
Confidence            99999999999999988766665543333322221                       1234455565555555566666


Q ss_pred             hhhhhHH--------hhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        576 LETNVIQ--------SQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       576 ~~~~~~~--------~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      +.++...        +.+-++....+.=.|.++...-.+|+..+++
T Consensus      1137 ~~de~rf~v~~kiC~~Ila~~~dG~l~~~D~~~q~lL~Daf~ILas 1182 (1529)
T KOG0413|consen 1137 LDDESRFDVKMKICQRILAPIVDGELDFSDYNVQCLLDDAFLILAS 1182 (1529)
T ss_pred             cChHHHHHHHHHHHHHHHHHHhcCcCChhhccHHHHHHHHHHHHhh
Confidence            5543221        2222222222344477777777788877764

>KOG2137|consensus

Probab=98.13  E-value=0.00026  Score=72.37  Aligned_cols=236  Identities=14%  Similarity=0.204  Sum_probs=153.7

Q ss_pred             CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhh
Q psy14014        296 SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL  375 (615)
Q Consensus       296 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l  375 (615)
                      .++.-+..-.+.|..++..++..    .+...++|.+.+.+.+..  .--...-.+..+++......+...++|.+...+
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~r----v~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~  358 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPAR----VLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIY  358 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHH----HHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHh
Confidence            34555666666777777666543    567778888877664321  111111111222222233445667788888777


Q ss_pred             c-CCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHH
Q psy14014        376 K-DECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPL  454 (615)
Q Consensus       376 ~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~  454 (615)
                      + .....+..-.++.++.+.+....+++.+.+     +                  |.+...+++...++++.++..++.
T Consensus       359 ~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~I-----l------------------plL~~S~~~~~~~iQ~~~L~~lpt  415 (700)
T KOG2137|consen  359 SASDPKQALLFILENMDLLKEKTPPEEVKEKI-----L------------------PLLYRSLEDSDVQIQELALQILPT  415 (700)
T ss_pred             ccCCcccchhhHHhhHHHHHhhCChHHHHHHH-----H------------------HHHHHHhcCcchhhHHHHHHhhhH
Confidence            6 334456666666665555555544443332     3                  778888889999999999999999


Q ss_pred             HHhhhChHhHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHH
Q psy14014        455 LAGQLGVEFFDEKLNALCMTW-LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVL  533 (615)
Q Consensus       455 l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l  533 (615)
                      +++.+...+..+.++|.+.++ +...+..||..++-|++.+++.+..-...+.++| ++...+.+++.+-+..++....+
T Consensus       416 v~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l  494 (700)
T KOG2137|consen  416 VAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLP-ILKCIKTRDPAIVMGFLRIYEAL  494 (700)
T ss_pred             HHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHH
Confidence            999998888889999999876 5677889999999999999977654333343444 44446677777777777766666


Q ss_pred             Hhhh--ChhhHHHhhHHHHHhhCCCCCchH
Q psy14014        534 AEAC--GPTVTANFLLPTVLNMAGDNVANV  561 (615)
Q Consensus       534 ~~~~--~~~~~~~~i~~~l~~~~~D~~~~v  561 (615)
                      +-..  |.+...++++|.+.-+...+.-++
T Consensus       495 ~~~~~~g~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  495 ALIIYSGVEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             HhhcccceeeehhhhhhhhhhhhhcccccH
Confidence            5332  234556788888887665544443

>KOG1967|consensus

Probab=98.12  E-value=0.02  Score=60.51  Aligned_cols=149  Identities=17%  Similarity=0.196  Sum_probs=117.9

Q ss_pred             chhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Q psy14014        422 EFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF  498 (615)
Q Consensus       422 ~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  498 (615)
                      +||.++.  |.+....+......|.-...++..+..+.+.+..   .+.++|.+++.+.-++..||..+..++..+....
T Consensus       863 RfF~~iv--P~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~  940 (1030)
T KOG1967|consen  863 RFFCDIV--PILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES  940 (1030)
T ss_pred             HHHHhhH--HHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence            3455555  7777777655666788888888888887776543   3578999999999999999999999999998876


Q ss_pred             Ch--HHhhhchhHHHHhhhcCCC---chHHHHHHHHHHHHHhhhChhh---HHHhhHHHHHhhCCCCCchHHHHHHHHHH
Q psy14014        499 GS--EWAQSTVIPKVVAMSRDQN---YLHRMTCLFCINVLAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQ  570 (615)
Q Consensus       499 ~~--~~~~~~i~~~l~~~~~d~~---~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~~~~vr~~a~~~l~  570 (615)
                      +.  ......++|.++.+..|.+   -.+|..|++|++.+.+..+...   |.+.++-.+.+.+.|+-.-||..|..+=.
T Consensus       941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            54  2244679999999888776   4689999999999998766554   45678888999999999999999987754


Q ss_pred             HH
Q psy14014        571 KI  572 (615)
Q Consensus       571 ~l  572 (615)
                      ..
T Consensus      1021 ~W 1022 (1030)
T KOG1967|consen 1021 NW 1022 (1030)
T ss_pred             hh
Confidence            43

>KOG0168|consensus

Probab=98.10  E-value=0.012  Score=61.55  Aligned_cols=154  Identities=14%  Similarity=0.189  Sum_probs=110.1

Q ss_pred             HhhhHHHHHHhhccC-chhHHHHHHHHHHHHHhhcChhh---HHHhHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCc
Q psy14014        204 KTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCS-GDTSWRVRYMVADKFTDLQKAVGP  278 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~  278 (615)
                      .+.++|.+..+++++ +.++-..|..++..+++.+|...   .....+|.+.+-+ .=.--.|-+.+.+++..++.--+.
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~  288 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK  288 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence            467999999999976 67899999999999999999752   1223677765533 334456888888888888875554


Q ss_pred             cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhh
Q psy14014        279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPIL  358 (615)
Q Consensus       279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~  358 (615)
                      ......-+...+.++.==...++..|+.....+|+.++.+..  .++-+.+|.|..+++..+.++-..++-++..++..+
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f--~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF--HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence            432222222233333222345678888888999999887654  356678999999999999999888888888887765


Q ss_pred             c
Q psy14014        359 G  359 (615)
Q Consensus       359 g  359 (615)
                      .
T Consensus       367 ~  367 (1051)
T KOG0168|consen  367 Q  367 (1051)
T ss_pred             c
Confidence            3

>KOG2025|consensus

Probab=98.09  E-value=0.0013  Score=66.90  Aligned_cols=206  Identities=17%  Similarity=0.132  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc--hhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014        163 GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  240 (615)
Q Consensus       163 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  240 (615)
                      +..+.++..+++....++..||..+++.+..+....+  ++...+.+...+...+.|..+.||..|+.+|..+-..-.++
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            4566677777788888999999999999888876432  24445667777777788999999999999998876433332


Q ss_pred             hHHHhHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHH-HHHHhhcccc
Q psy14014        241 DVEQLVMPTLRQC-SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV-RDFCQNLDAY  318 (615)
Q Consensus       241 ~~~~~l~~~l~~~-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l-~~~~~~~~~~  318 (615)
                      .+  .+...+..+ -+||+..||+++...+..          .+.-.|.+....+|-+..+|..+-..+ +.+ . +.. 
T Consensus       161 e~--~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d-~r~-  225 (892)
T KOG2025|consen  161 EC--PVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-D-LRS-  225 (892)
T ss_pred             cc--cHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-h-hhh-
Confidence            21  234444443 378999999998765543          234566677777777777776543332 222 1 100 


Q ss_pred             chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc-CCChhHHHHHHHhhhH
Q psy14014        319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDC  392 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~-d~~~~vr~~a~~~l~~  392 (615)
                          .-...-.-.+.+.++|.+..||.++...+..     |--.+.+.=++-+++.+. ..+.+|+..++++|=.
T Consensus       226 ----lsi~krv~LlewgLnDRe~sVk~A~~d~il~-----~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  226 ----LSIDKRVLLLEWGLNDREFSVKGALVDAILS-----GWLRFSDGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             ----hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-----HHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence                1123344556677888888888887776632     110011111222333333 3345677666666533

>KOG4413|consensus

Probab=98.07  E-value=0.0031  Score=58.17  Aligned_cols=322  Identities=16%  Similarity=0.137  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc-------hhhhHHHHHHHhhcCCc
Q psy14014        225 LAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI-------TKTDLVQAFQMLLKDSE  297 (615)
Q Consensus       225 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~  297 (615)
                      .++.++..+...--+....+.+.|.+...+..++..|+..+++.++.+.+....+.       ....+++.+..++..++
T Consensus        62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged  141 (524)
T KOG4413|consen   62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED  141 (524)
T ss_pred             hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence            36666666655555555566778888888888888888888888888776554221       24578899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH-------HHHhhCCCCHHHHHHHHHHHHhhchhhc---chhhhhhh
Q psy14014        298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY-------VKDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHL  367 (615)
Q Consensus       298 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~-------l~~~~~d~~~~vR~~~~~~l~~l~~~~g---~~~~~~~l  367 (615)
                      .+|-.+|+..+..+...- .      -+..++|.       +.++...-+.-+|.-..+.+-.+..+..   .+....-+
T Consensus       142 deVAkAAiesikrialfp-a------aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL  214 (524)
T KOG4413|consen  142 DEVAKAAIESIKRIALFP-A------ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL  214 (524)
T ss_pred             HHHHHHHHHHHHHHHhcH-H------HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence            999999999999887531 1      11222221       1111111122333333343333322211   11122235


Q ss_pred             HHHHHHhhcC-CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHH
Q psy14014        368 LPLFLSQLKD-ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRL  446 (615)
Q Consensus       368 ~p~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~  446 (615)
                      +..+..-++. ++.-|+..+++....+.+.-...++-.....++.+.                 ..|...-+|+..+.| 
T Consensus       215 ldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlic-----------------nIIsGadsdPfekfr-  276 (524)
T KOG4413|consen  215 LDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLIC-----------------NIISGADSDPFEKFR-  276 (524)
T ss_pred             HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH-----------------HHhhCCCCCcHHHHH-
Confidence            5555555543 566677777777666654332211111111111111                 111111122322222 


Q ss_pred             HHHHHhHHHHhhhChHhHH-----------HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh-ChHHhhhc---hhHHH
Q psy14014        447 AIIEYMPLLAGQLGVEFFD-----------EKLNALCMTWLVDHVYAIREAATLNLKKLVEQF-GSEWAQST---VIPKV  511 (615)
Q Consensus       447 ~~~~~l~~l~~~~~~~~~~-----------~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~---i~~~l  511 (615)
                          ++..+.+.+|++-..           ...+...+.+....+....++|+.++|.+.... |.+.....   -..++
T Consensus       277 ----almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehl  352 (524)
T KOG4413|consen  277 ----ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHL  352 (524)
T ss_pred             ----HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHH
Confidence                333344444443221           122333455555566667889999999987654 22222211   22234


Q ss_pred             HhhhcCCCchHH-HHHHHHHHHHHhhh--ChhhH---------HHhh------------HHHHHhhCCCCCchHHHHHHH
Q psy14014        512 VAMSRDQNYLHR-MTCLFCINVLAEAC--GPTVT---------ANFL------------LPTVLNMAGDNVANVRFNVAK  567 (615)
Q Consensus       512 ~~~~~d~~~~~R-~~a~~~l~~l~~~~--~~~~~---------~~~i------------~~~l~~~~~D~~~~vr~~a~~  567 (615)
                      +.-..|.|..-+ ..+++|+..++...  .++..         ...+            +..+...++.+-++++..+.+
T Consensus       353 larafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalk  432 (524)
T KOG4413|consen  353 LARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALK  432 (524)
T ss_pred             HHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHH
Confidence            443445555444 45677888887432  11110         0111            122333467889999999999


Q ss_pred             HHHHHhHh
Q psy14014        568 TLQKIGPI  575 (615)
Q Consensus       568 ~l~~l~~~  575 (615)
                      ++..+...
T Consensus       433 tfTAiaaq  440 (524)
T KOG4413|consen  433 TFTAIAAQ  440 (524)
T ss_pred             HHHHHHcC
Confidence            99888643

>KOG2956|consensus

Probab=98.06  E-value=0.00064  Score=65.78  Aligned_cols=191  Identities=10%  Similarity=0.130  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhhhHhhhHHHHHHhhcc-CchhHHHHHHHHHHHHHhhcChhh
Q psy14014        166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQSD  241 (615)
Q Consensus       166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~  241 (615)
                      ..+...+..+-.+....-|+.+..-|..+...-+   ++.+...|+-.+.+.+.| .++..|+.|+..+..+++.-+..-
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l  365 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL  365 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence            4455666666666666777877775555443211   244456788888888888 788899999999999988766532


Q ss_pred             H--HHhHHHHHHHhcCCCChHHHHHHHHHHHHH-HHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        242 V--EQLVMPTLRQCSGDTSWRVRYMVADKFTDL-QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       242 ~--~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l-~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                      +  ....+..+.+...|.+..|-..+.+....+ +.+.+. .....+.|.++.    .+...-.++++.+..+++.++.+
T Consensus       366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E  440 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-QCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE  440 (516)
T ss_pred             hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-hHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence            2  233555666777888877777776665544 444332 222233444333    33333456777888888877766


Q ss_pred             chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014        319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN  362 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~  362 (615)
                      ... .+++.+.|.+.+..++.+..||.+++-+|..+...+|.+.
T Consensus       441 eL~-~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~  483 (516)
T KOG2956|consen  441 ELL-NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE  483 (516)
T ss_pred             HHH-HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh
Confidence            433 4577889999999999999999999999999998888543

>KOG4653|consensus

Probab=98.03  E-value=0.0011  Score=68.79  Aligned_cols=221  Identities=17%  Similarity=0.198  Sum_probs=149.9

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc--hhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHH
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQ  244 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  244 (615)
                      +-++.-+..+.|+...+|.+++..+..+++.-.  +-.....++.++...++|++.-|--.|+..+..+++..+++    
T Consensus       727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----  802 (982)
T KOG4653|consen  727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----  802 (982)
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----
Confidence            344455566788889999999999999988432  23345689999999999999999999999999999875543    


Q ss_pred             hHHHHHHH-h---cCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        245 LVMPTLRQ-C---SGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       245 ~l~~~l~~-~---~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                       ++|.+.+ +   -+.+....|..+.+++++++...|+-.  ....++..++...+|++.+-|..++.+++.++....-.
T Consensus       803 -il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 -ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             -hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence             5555544 2   222324455566677888777776543  23478888999999999899999999999999865422


Q ss_pred             chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh---hh---hhHHHHHHhhc-CCChhHHHHHHHhhh
Q psy14014        319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT---VD---HLLPLFLSQLK-DECPEVRLNIISNLD  391 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~---~~---~l~p~l~~~l~-d~~~~vr~~a~~~l~  391 (615)
                      .. +++.+.+.-.+.-.-.|.+..+|++|+..+..+....|.+..   ..   .+...+.+... ++++.++..+..++.
T Consensus       882 vs-d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VS-DFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hh-HHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            11 133333333333445689999999999999988877774321   00   11222233333 345566777766665


Q ss_pred             Hh
Q psy14014        392 CV  393 (615)
Q Consensus       392 ~l  393 (615)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            44

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.01  E-value=0.0086  Score=61.18  Aligned_cols=285  Identities=19%  Similarity=0.196  Sum_probs=129.2

Q ss_pred             ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCCh
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW  259 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~  259 (615)
                      +..+++.+++.+..+.+.++.-  ....+..+..++.|++..||..|+..|..+|..-+  .+.+.+..+|.+++...+.
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd~  110 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDDP  110 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---H
T ss_pred             CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhcccH
Confidence            5666677777777766666542  34456666666777777777777777766665432  2345566666666665555


Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh--cCCcHHHHHHHHHHHHHHHhhccccchh--HHHHHhhHHHHHHh
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL--KDSEAEVRAAAANKVRDFCQNLDAYNQE--NIIMTYILPYVKDL  335 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~p~l~~~  335 (615)
                      ..+..+=++|..+...-+    ...+-.++.+..  ...+..+|+.+++.|..-+..++.+...  +.....+...+.+.
T Consensus       111 ~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv  186 (556)
T PF05918_consen  111 VELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV  186 (556)
T ss_dssp             HHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH
Confidence            555555555555443211    122333333333  2445678888888886655555443222  23344555666777


Q ss_pred             hCCCCHHHHHHHHHHHHhhchhhc-c--hhhhhhhHHHHHHhhc-C-----CChhHHHHHHHhhhHhhhhhchhHHHHHH
Q psy14014        336 VADPNQHVKSALASVIMGLSPILG-K--HNTVDHLLPLFLSQLK-D-----ECPEVRLNIISNLDCVNEVIGIQQWRVRL  406 (615)
Q Consensus       336 ~~d~~~~vR~~~~~~l~~l~~~~g-~--~~~~~~l~p~l~~~l~-d-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  406 (615)
                      ++|....-=..+...|..+- .+| .  ..-.+.+++.+.+... |     .+++.-...+.++..              
T Consensus       187 L~DVTaeEF~l~m~lL~~lk-~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~--------------  251 (556)
T PF05918_consen  187 LQDVTAEEFELFMSLLKSLK-IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQ--------------  251 (556)
T ss_dssp             CTT--HHHHHHHHHHHHTSG-G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHH--------------
T ss_pred             HHhccHHHHHHHHHHHHhCc-cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHH--------------
Confidence            77744322223333444332 222 1  1123456666665542 1     112222222222211              


Q ss_pred             HHHhhhhhhhhccc-cchh---hhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-----
Q psy14014        407 AIIEYMPLLAGQLG-VEFF---DEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-----  477 (615)
Q Consensus       407 ~i~~~l~~l~~~~~-~~~~---~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----  477 (615)
                          .+|.+..... ..|+   -+.+. |.+.++    ....|...+..+..++...|... ...++|.+++.|.     
T Consensus       252 ----Alp~fs~~v~Sskfv~y~~~kvl-P~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~  321 (556)
T PF05918_consen  252 ----ALPFFSRGVSSSKFVNYMCEKVL-PKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPS  321 (556)
T ss_dssp             ----HGGG-BTTB--HHHHHHHHHHTC-CCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS--
T ss_pred             ----hhHHhcCCCChHHHHHHHHHHhc-CChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCC
Confidence                1333322111 1111   11111 322222    22355567778888877777544 4445566655542     


Q ss_pred             -----CcchHHHHHHHHHHHHHHHH
Q psy14014        478 -----DHVYAIREAATLNLKKLVEQ  497 (615)
Q Consensus       478 -----d~~~~vR~~a~~~l~~l~~~  497 (615)
                           +-+...-++.+.++..++..
T Consensus       322 ~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  322 KKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             --------HHHHHHHHHHHHHHHTT
T ss_pred             CCCCCcccchHhhHHHHHHHHHhhh
Confidence                 11345556666666666654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2025|consensus

Probab=98.00  E-value=0.0011  Score=67.48  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCC
Q psy14014        302 AAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDEC  379 (615)
Q Consensus       302 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~  379 (615)
                      ...+..+..|...++....+..+++.++.++.+....++..||..++..+..+....+.  +...+.+...+...+.|+.
T Consensus        60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre  139 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE  139 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence            34566667777777665555568888999999999999999999999998888764442  5566778888889999999


Q ss_pred             hhHHHHHHHhhhHhhhhhchh
Q psy14014        380 PEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       380 ~~vr~~a~~~l~~l~~~~~~~  400 (615)
                      +.||..|+.+|+.+...-+++
T Consensus       140 p~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen  140 PNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             chHHHHHHHHHHHHhcCCCCC
Confidence            999999999999887544433

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.95  E-value=0.0022  Score=61.67  Aligned_cols=188  Identities=18%  Similarity=0.209  Sum_probs=130.5

Q ss_pred             HHHHHHhCCCChHHHHHHHHhHHHHHHH-hchhh---hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcC----hhh
Q psy14014        170 SHFRNLCQDDTPMVRRAAAGKLGELAKV-VEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS----QSD  241 (615)
Q Consensus       170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~-~~~~~---~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~  241 (615)
                      ...+..+.+.....|..++..+..+... ...+.   ....+++.+...++-+..+-+..|..+++-++-.+|    .+.
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            3445556788899999999988766543 22222   245677778887876666667788888888877765    356


Q ss_pred             HHHhHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhCccc-hhhhHHHHHHH-----hhc-C---------CcHHHHHH
Q psy14014        242 VEQLVMPTLRQCSGDTS--WRVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQM-----LLK-D---------SEAEVRAA  303 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~--~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~-----~l~-d---------~~~~vr~~  303 (615)
                      +...+.|.|.+.+.|.+  ..+|.+++.+|+-+.-..+.+. .....+..+..     ..+ |         +++.+..+
T Consensus       126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a  205 (309)
T PF05004_consen  126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA  205 (309)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence            67789999999988865  5688888888887766544432 12222233221     111 1         23679999


Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhh
Q psy14014        304 AANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPIL  358 (615)
Q Consensus       304 a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~  358 (615)
                      |+.+++-++..++..... ...+..+|.+..+++..+..||.++.++|.-+.+..
T Consensus       206 AL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  206 ALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             HHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999988877654332 456778889999999999999999988887765543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.93  E-value=0.0024  Score=61.39  Aligned_cols=183  Identities=19%  Similarity=0.186  Sum_probs=124.2

Q ss_pred             HHHHhhhcCCchHHHHHHHHhHHHHh-hhChHhHH---HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC--h--HHh
Q psy14014        432 SIVELAEDSKWRVRLAIIEYMPLLAG-QLGVEFFD---EKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG--S--EWA  503 (615)
Q Consensus       432 ~i~~~~~~~~~~vr~~~~~~l~~l~~-~~~~~~~~---~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~--~~~  503 (615)
                      ...+.+.+++...|+.++..+..+.. .+-.++..   ..+++.+.+.++-....=+..|+.+++.++-.+|  .  +..
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            34455677888899999988777653 34444443   4466777777765555667788899999988876  2  234


Q ss_pred             hhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChhh-HHH---hhHHHHHh---hCCC---------CCchHHHHH
Q psy14014        504 QSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPTV-TAN---FLLPTVLN---MAGD---------NVANVRFNV  565 (615)
Q Consensus       504 ~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~~-~~~---~i~~~l~~---~~~D---------~~~~vr~~a  565 (615)
                      .+.+.|.|...+.|.  ++..|..++.||+.+....+.+. -..   ..+..+..   .-.|         +++.+..+|
T Consensus       127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA  206 (309)
T PF05004_consen  127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA  206 (309)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence            466888888888876  45788899999999876544332 122   22331111   1122         246799999


Q ss_pred             HHHHHHHhHhhhhhhH---HhhHHHHHhhhcCCCCccHHHHHHHHHHHHhhc
Q psy14014        566 AKTLQKIGPILETNVI---QSQVKPALDKLNGDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       566 ~~~l~~l~~~~~~~~~---~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      ..+++-+...++...+   .+...|.+..++...|.+||-.|-+++..+-|.
T Consensus       207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            9999999988775333   333455566667888999999999999988653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.92  E-value=0.013  Score=59.85  Aligned_cols=260  Identities=17%  Similarity=0.176  Sum_probs=137.4

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChH
Q psy14014        103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM  182 (615)
Q Consensus       103 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~  182 (615)
                      +..++..|.+-+.++.+++|.  +.+.-+..+..++.|++..+|..|++-++.+|..- ++....+...|.++++..++.
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd~~  111 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDDPV  111 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HH
T ss_pred             CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhcccHH
Confidence            466777788877777777763  44555666677788888888888888888777552 345566778888899988888


Q ss_pred             HHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhh--ccCchhHHHHHHHHHHHHHhhcCh------hhHHHhHHHHHHHhc
Q psy14014        183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA--QDEQDSVRLLAVEACVSIASLLSQ------SDVEQLVMPTLRQCS  254 (615)
Q Consensus       183 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~  254 (615)
                      .+..+-.+|..+.+.-+.    ..+-.+|.++.  ..+++.+|+.++..+..-...++.      ++....++..+.+.+
T Consensus       112 E~~~v~~sL~~ll~~d~k----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL  187 (556)
T PF05918_consen  112 ELDAVKNSLMSLLKQDPK----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL  187 (556)
T ss_dssp             HHHHHHHHHHHHHHH-HH----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCcH----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence            888888888888775432    23444444444  245678999999888654443333      344556778888888


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhc------CCcHHHHHHHHHHHHHHHhhcccc----chh
Q psy14014        255 GDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLK------DSEAEVRAAAANKVRDFCQNLDAY----NQE  321 (615)
Q Consensus       255 ~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~----~~~  321 (615)
                      .|-...==..+...|..+ ..++..   ....++++++.....      -.+++.-...+.++..-...+...    ..-
T Consensus       188 ~DVTaeEF~l~m~lL~~l-k~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv  266 (556)
T PF05918_consen  188 QDVTAEEFELFMSLLKSL-KIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFV  266 (556)
T ss_dssp             TT--HHHHHHHHHHHHTS-GG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHH
T ss_pred             HhccHHHHHHHHHHHHhC-ccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHH
Confidence            874321111111222221 121111   122456666654331      122333333333333322222221    112


Q ss_pred             HHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhh
Q psy14014        322 NIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL  375 (615)
Q Consensus       322 ~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l  375 (615)
                      .++...++|.+.++    ....|..+++.+..++...|... ...++|.+.+.|
T Consensus       267 ~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L  315 (556)
T PF05918_consen  267 NYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL  315 (556)
T ss_dssp             HHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred             HHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence            34556666655444    55677788888988888877644 445556665554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.89  E-value=1.5e-05  Score=54.63  Aligned_cols=53  Identities=25%  Similarity=0.295  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHH
Q psy14014        520 YLHRMTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKI  572 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l  572 (615)
                      |.+|..++.+||.+++..+..  .+.+.++|.|..+++|+++.||.+++.+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            567888888888876554432  24567888888888888888888888888764

...

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=97.86  E-value=0.017  Score=59.99  Aligned_cols=216  Identities=16%  Similarity=0.175  Sum_probs=132.2

Q ss_pred             hCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHH--HhhcC-----CChhHHHHHHHhhhHhhhhhchhHHHHHHHH
Q psy14014        336 VADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFL--SQLKD-----ECPEVRLNIISNLDCVNEVIGIQQWRVRLAI  408 (615)
Q Consensus       336 ~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~--~~l~d-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i  408 (615)
                      ..|++..|-..+-..+..+...+....+.+.+...+.  ..-.+     .++.+|...+..|+.-.....          
T Consensus       246 sad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~----------  315 (501)
T PF13001_consen  246 SADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT----------  315 (501)
T ss_pred             EeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh----------
Confidence            4667777877777777777766666666666666655  21111     244566666665543221110          


Q ss_pred             HhhhhhhhhccccchhhhhhhhHHHHHhhhcC--CchHHHHHHHHh---HHHHhhhChHhHH---HHHHHHHHHhcC---
Q psy14014        409 IEYMPLLAGQLGVEFFDEKLNALSIVELAEDS--KWRVRLAIIEYM---PLLAGQLGVEFFD---EKLNALCMTWLV---  477 (615)
Q Consensus       409 ~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~--~~~vr~~~~~~l---~~l~~~~~~~~~~---~~l~~~l~~~l~---  477 (615)
                                    .++..+  ..+...+.+.  +.++|..+++.+   .......+.....   +.+...++..+.   
T Consensus       316 --------------~~~~~~--~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~  379 (501)
T PF13001_consen  316 --------------SFPNIL--QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSS  379 (501)
T ss_pred             --------------CCccHH--HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccccc
Confidence                          111111  2344445444  778888888888   7777766665422   333333444452   


Q ss_pred             -----CcchHHHHHHHHHHHHHHHHhChHHhh-hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH-----HHh-
Q psy14014        478 -----DHVYAIREAATLNLKKLVEQFGSEWAQ-STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT-----ANF-  545 (615)
Q Consensus       478 -----d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~-----~~~-  545 (615)
                           ......|..+.+++|.+++....-+.. -.++..|.+.+.++.+.+|.+.-.|++.+...+....-     ... 
T Consensus       380 ~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~  459 (501)
T PF13001_consen  380 SQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLL  459 (501)
T ss_pred             ccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence                 246789999999999999876543211 13566666667888999999999999999877643211     111 


Q ss_pred             hHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014        546 LLPTVLNMAGDNVANVRFNVAKTLQKIGPILE  577 (615)
Q Consensus       546 i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~  577 (615)
                      ..-.+.....+....+|..|++-...+.+..+
T Consensus       460 ~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  460 LELLLLSYIQSEVRSCRYAAVKYANACFPFSD  491 (501)
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHhCCccc
Confidence            22233334567778899999888888876543

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.86  E-value=4.4e-05  Score=52.27  Aligned_cols=53  Identities=23%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        341 QHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       341 ~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                      |.||.+++.+|+.+++..+.  ..+.+.++|.+..+++|+++.||..|+.+|+.+
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            78999999999998766554  446778999999999999999999999998753

...

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.67  E-value=8.5e-05  Score=43.58  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=14.8

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQK  274 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~  274 (615)
                      +|.+.++++|++|.||.+++.+++.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            4555555555555555555555555543

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=97.64  E-value=0.019  Score=59.66  Aligned_cols=164  Identities=10%  Similarity=0.090  Sum_probs=102.0

Q ss_pred             CCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCc--chHHHHHHHHHH---HHHHHHhChHHhhhchhHHH---
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDH--VYAIREAATLNL---KKLVEQFGSEWAQSTVIPKV---  511 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vR~~a~~~l---~~l~~~~~~~~~~~~i~~~l---  511 (615)
                      .++.+|..++..+..-....   ...+.++..++..+..+  +..+|..++..+   ......+++.... .+-|.+   
T Consensus       295 a~~~lq~kIL~~L~kS~~Aa---~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~  370 (501)
T PF13001_consen  295 ASPRLQEKILSLLSKSVIAA---TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQ  370 (501)
T ss_pred             CCHHHHHHHHHHHHHhHHHH---hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhc
Confidence            35566666666555432211   12245666677777666  778999999999   7777777764322 223332   


Q ss_pred             -Hhhhc--------CCCchHHHHHHHHHHHHHhhhChhhHH-HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh-
Q psy14014        512 -VAMSR--------DQNYLHRMTCLFCINVLAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV-  580 (615)
Q Consensus       512 -~~~~~--------d~~~~~R~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~-  580 (615)
                       .....        ..+...|..+..++|.++...+.-+.. -.++..+...+.++.+++|.++-.||..+...+.... 
T Consensus       371 g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~  450 (501)
T PF13001_consen  371 GWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD  450 (501)
T ss_pred             CccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc
Confidence             22332        235678999999999999876654322 2355555555689999999999999999998875321 


Q ss_pred             -----HHhhHHHHHhhhcCCCCccHHHHHHHH
Q psy14014        581 -----IQSQVKPALDKLNGDTDVDVKYFAQEA  607 (615)
Q Consensus       581 -----~~~~~~~~l~~l~~d~d~~v~~~a~~a  607 (615)
                           ....+..++.....+....+|+.|..=
T Consensus       451 ~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~  482 (501)
T PF13001_consen  451 DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKY  482 (501)
T ss_pred             chhHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence                 112222233333455566677766643

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.64  E-value=0.089  Score=52.94  Aligned_cols=159  Identities=13%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             hccCchhHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHh
Q psy14014        215 AQDEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQML  292 (615)
Q Consensus       215 ~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  292 (615)
                      +..++..||..+++.+..+...+++  +.....++..+.+-+-|....||..+..+|..+-..-+++.  ..+...+...
T Consensus       100 ~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~  177 (885)
T COG5218         100 TESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDI  177 (885)
T ss_pred             ccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHH
Confidence            3444555666666665555555554  34444455555555555666666666666655554333321  2233333333


Q ss_pred             h-cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHH-HHHhhchhhcchhhhhhhHHH
Q psy14014        293 L-KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALAS-VIMGLSPILGKHNTVDHLLPL  370 (615)
Q Consensus       293 l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~-~l~~l~~~~g~~~~~~~l~p~  370 (615)
                      + .|+..+||..|+..+..              .+.-.|++.+...|.+-..|+.+.. .|..++.... ....+.+. .
T Consensus       178 vqnDPS~EVRr~allni~v--------------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~-lsi~kri~-l  241 (885)
T COG5218         178 VQNDPSDEVRRLALLNISV--------------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS-LSIDKRIL-L  241 (885)
T ss_pred             HhcCcHHHHHHHHHHHeee--------------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh-ccccceeh-h
Confidence            3 47778888877765532              1335688888888888777765533 3344332110 01112222 5


Q ss_pred             HHHhhcCCChhHHHHHHHhhh
Q psy14014        371 FLSQLKDECPEVRLNIISNLD  391 (615)
Q Consensus       371 l~~~l~d~~~~vr~~a~~~l~  391 (615)
                      +...+.|++..|+.++...+.
T Consensus       242 ~ewgl~dRe~sv~~a~~d~ia  262 (885)
T COG5218         242 MEWGLLDREFSVKGALVDAIA  262 (885)
T ss_pred             hhhcchhhhhhHHHHHHHHHH
Confidence            556778888888888877664

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.60  E-value=9.7e-05  Score=43.32  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=13.6

Q ss_pred             hHHHHhhhcCCCchHHHHHHHHHHHHHh
Q psy14014        508 IPKVVAMSRDQNYLHRMTCLFCINVLAE  535 (615)
Q Consensus       508 ~~~l~~~~~d~~~~~R~~a~~~l~~l~~  535 (615)
                      +|.+.++++|+++.||.+|+.+++.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            4444555555555555555555555443

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.56  E-value=0.14  Score=60.31  Aligned_cols=278  Identities=10%  Similarity=0.067  Sum_probs=160.9

Q ss_pred             hHHHHHHHhhcCCCcchhhhHHhhhhhhccCCC---h----hhHHHHHHHHHH-HhCCCChHHHHHHHHhHHHHHHHhch
Q psy14014        129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT---A----GVKAELRSHFRN-LCQDDTPMVRRAAAGKLGELAKVVEV  200 (615)
Q Consensus       129 ~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---~----~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~  200 (615)
                      .+-+++.....+.+..++..|+..+..++..+-   +    ..+++++.-|.. +....+.+||..+++++..+....+.
T Consensus      1137 ~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076       1137 VLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence            344444444334445566666666655544331   1    245666655544 33456789999999999988776554


Q ss_pred             --hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhh-cC---h--hhHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHH
Q psy14014        201 --DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL-LS---Q--SDVEQLVMPTLRQCSGDT-SWRVRYMVADKFTD  271 (615)
Q Consensus       201 --~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~  271 (615)
                        ...|..++.++.....++.+.+-..|.+++..+... ++   .  ......++..+.++.+.. +..+--.++..|..
T Consensus      1217 nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076       1217 NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred             hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence              235788999998888888888888889988776543 22   1  233445666666655432 23333344444443


Q ss_pred             HHHHhC-----------------------------------ccchhhhHHHHH---HHhhcCCcHHHHHHHHHHHHHHHh
Q psy14014        272 LQKAVG-----------------------------------PEITKTDLVQAF---QMLLKDSEAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       272 l~~~~~-----------------------------------~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~~~~  313 (615)
                      ++..+-                                   .+....-.+|+|   ..+..|+.++||..|+..|=.++.
T Consensus      1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076       1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred             HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            322220                                   000001234443   445679999999999999877776


Q ss_pred             hccccchhH----HHHHhhHHHHHHhhC----------------------CCCHHHHHHHHHHHHhhchhhcc-----hh
Q psy14014        314 NLDAYNQEN----IIMTYILPYVKDLVA----------------------DPNQHVKSALASVIMGLSPILGK-----HN  362 (615)
Q Consensus       314 ~~~~~~~~~----~~~~~l~p~l~~~~~----------------------d~~~~vR~~~~~~l~~l~~~~g~-----~~  362 (615)
                      ..+.....+    .+...++|.+..+-.                      +.+.....++..++..++..+..     ..
T Consensus      1377 ~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~ 1456 (1780)
T PLN03076       1377 NHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP 1456 (1780)
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655443321    234456666544210                      01112356667777777666553     11


Q ss_pred             hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh----hhchhHHHHHH
Q psy14014        363 TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE----VIGIQQWRVRL  406 (615)
Q Consensus       363 ~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~----~~~~~~~~~~~  406 (615)
                      ..+.++..+..++..+++.+-.....+|..++.    .+.++.|.+-.
T Consensus      1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~ 1504 (1780)
T PLN03076       1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVV 1504 (1780)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            233344445555666777777777777777654    34667888655

>KOG1517|consensus

Probab=97.52  E-value=0.0024  Score=67.88  Aligned_cols=212  Identities=15%  Similarity=0.099  Sum_probs=142.6

Q ss_pred             hhhhHHhhhhhhccCCC----hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhhhHhhhHHHHHHhhcc
Q psy14014        145 SRTSACGLFSVCYPRVT----AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQD  217 (615)
Q Consensus       145 ~r~~a~~~l~~~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~d  217 (615)
                      .|.-|..+++.+...-+    -..--.|+|+.+++++.+..+.|-..+-....+...-+   .+..++.....|.+.+.+
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            46667777777754432    11223588999999999999999887776666654321   133333344445555554


Q ss_pred             -C--chhHHHHHHHHHHHHHhhcCh--h-hHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCccc---hhhhHHH
Q psy14014        218 -E--QDSVRLLAVEACVSIASLLSQ--S-DVEQLVMPTLRQCSGDT-SWRVRYMVADKFTDLQKAVGPEI---TKTDLVQ  287 (615)
Q Consensus       218 -~--~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~  287 (615)
                       +  +++-|..|.-.|..++..+.-  + .....++.+..+.++|+ .|-.|.-++-+||.+=..+...-   .......
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence             2  357888888899999888753  2 23345777888888884 79999999999999866543221   1234556


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhccccchh--------------HHHHHhhHH----HHHHhhCCCCHHHHHHHHH
Q psy14014        288 AFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQE--------------NIIMTYILP----YVKDLVADPNQHVKSALAS  349 (615)
Q Consensus       288 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~--------------~~~~~~l~p----~l~~~~~d~~~~vR~~~~~  349 (615)
                      .++.++.|+-++||.+|+.+|+.|+........+              ....+.+++    .+..+++|.++-||..++.
T Consensus       646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v  725 (1387)
T KOG1517|consen  646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV  725 (1387)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence            6888899999999999999999999864221110              111233333    4556788889999988888


Q ss_pred             HHHhhch
Q psy14014        350 VIMGLSP  356 (615)
Q Consensus       350 ~l~~l~~  356 (615)
                      +++.++.
T Consensus       726 ~ls~~~~  732 (1387)
T KOG1517|consen  726 ALSHFVV  732 (1387)
T ss_pred             HHHHHHH
Confidence            8776643

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0058  Score=60.69  Aligned_cols=273  Identities=17%  Similarity=0.158  Sum_probs=150.1

Q ss_pred             HHHHHHHhcCccHHHHHH---HHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCCcchhh
Q psy14014         15 IAVLIDELKNEDVQLRLN---SIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGPEYVH   89 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~---a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~   89 (615)
                      -+.+-+.+-+++...|..   |+-.++-+--.+|.+ ..+.|...+... +|+.  ++...++--+|-..  ++.  .-.
T Consensus       372 ~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~-~TeYL~e~~~~t-eDe~~~~l~yG~~LGiGL~~--MgS--an~  445 (926)
T COG5116         372 YEILKPYLPSEVASSRQKEGGALYALGLIKAGFGRE-DTEYLLEYFLDT-EDELTPELAYGVCLGIGLIN--MGS--ANR  445 (926)
T ss_pred             hHhhhccCCcccchhhhccCceeeeehhhccCcCcc-cHHHHHHHhCcc-cccccHHHHHHHHhhhcchh--ccc--ccH
Confidence            344445666666655553   333444443334444 333443222111 1222  25555554444322  111  124


Q ss_pred             hchHHHhhhhcCchhHHHHHHHHHHHHHHhh-cChhHHhhhHHHHHHHhhcCCCc-c-hhhhHHhhhhhhccCCChhhHH
Q psy14014         90 CLLPPLESLATVEETVVRDKAVESLRLISAQ-HSPHDLEAHFVPLVQRLASGDWF-T-SRTSACGLFSVCYPRVTAGVKA  166 (615)
Q Consensus        90 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~l~~l~~l~~~~~~-~-~r~~a~~~l~~~~~~~~~~~~~  166 (615)
                      .+..-++.++.++....-++|.-.++-++-- .+.+     .+.-+...++.... + .|-.++.+  .+.....+++  
T Consensus       446 eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~e-----ai~dm~tya~ETqhe~i~Rglgig~--aLi~ygrqe~--  516 (926)
T COG5116         446 EIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVE-----AIEDMRTYAGETQHERIKRGLGIGF--ALILYGRQEM--  516 (926)
T ss_pred             HHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHH-----HHHHHHHHhcchhhhhHHhhhhhhh--hHhhhhhHHH--
Confidence            5666777777777666666666555543221 1222     12223333333221 1 12222211  1111111121  


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHh-hccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL-AQDEQDSVRLLAVEACVSIASLLSQSDVEQL  245 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  245 (615)
                       .-.++..++.|.++..|..-+-+++.-...-+.    ..++.-+... .+|.++.||++|+-+++-++-.      ...
T Consensus       517 -add~I~ell~d~ds~lRy~G~fs~alAy~GTgn----~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~  585 (926)
T COG5116         517 -ADDYINELLYDKDSILRYNGVFSLALAYVGTGN----LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRD  585 (926)
T ss_pred             -HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----chhHhhhheeecccCchHHHHHHHHheeeeEec------Ccc
Confidence             223556778999999999876665432221222    2333333343 6899999999999988865421      122


Q ss_pred             HHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        246 VMPTLRQC-SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       246 l~~~l~~~-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                      .++-..++ .++-++.||...+-+||-.+...|.+    ..+.++..+..|++.-||++|+-+++.+.-...+
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence            34444444 44567899999999999988776653    5677788889999999999999999988765543

>KOG1525|consensus

Probab=97.50  E-value=0.023  Score=63.86  Aligned_cols=334  Identities=16%  Similarity=0.111  Sum_probs=175.6

Q ss_pred             CcchHHHHH---HHhcCccHHHHHHHHhcHHHHHHHhCcch---------hhccchhhhhhhcCCcHH--HHH-HHHHHh
Q psy14014         11 SLYPIAVLI---DELKNEDVQLRLNSIKKLSTIALALGQER---------TRGELIPFLTETIYDEDE--VLL-ALAEQL   75 (615)
Q Consensus        11 ~~~~i~~ll---~~l~s~d~~~R~~a~~~l~~~~~~~~~~~---------~~~~ll~~l~~~~~~~~~--vr~-~a~~~l   75 (615)
                      ++.|+..-|   .-|+|+|.++|.-..=+++++-+.+.|+.         +...++..+..+.+..++  -|+ ...+.+
T Consensus        45 ~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl  124 (1266)
T KOG1525|consen   45 SLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETL  124 (1266)
T ss_pred             HHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHH
Confidence            345555544   33889999999999999999988777763         111122222222222223  222 122222


Q ss_pred             cc-----ccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHH-HhhcCC---Ccchh
Q psy14014         76 GT-----FTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQ-RLASGD---WFTSR  146 (615)
Q Consensus        76 ~~-----l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~-~l~~~~---~~~~r  146 (615)
                      ..     ++......+..+.+..++..++.++.+.--..-...+..+....  +.+...++.++. .+....   ....+
T Consensus       125 ~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~  202 (1266)
T KOG1525|consen  125 AKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEAD  202 (1266)
T ss_pred             HHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHH
Confidence            21     12222234566666667766665544432223333333333332  233344444443 333322   23344


Q ss_pred             hhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHH
Q psy14014        147 TSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA  226 (615)
Q Consensus       147 ~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a  226 (615)
                      ..|..++..+...+.+...+.+...+...-. .-..++...-+.+-.+....+.  ....++|.+..-+..++..+|..|
T Consensus       203 ~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a  279 (1266)
T KOG1525|consen  203 KLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKA  279 (1266)
T ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHH
Confidence            4455555555555554444433333322221 1122333344445555444433  245577777777778889999999


Q ss_pred             HHHHHHHHhhcChhhH--HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHH-HHHHhhcCCcHHHHHH
Q psy14014        227 VEACVSIASLLSQSDV--EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQ-AFQMLLKDSEAEVRAA  303 (615)
Q Consensus       227 ~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~~  303 (615)
                      +..++.+...-+....  .+.++..+..-+.|.+..||..+.++.......-+   ...+-.. .+.-...|.++.+|..
T Consensus       280 ~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~---~~~~~~~~~~~l~~~~~D~~~rir  356 (1266)
T KOG1525|consen  280 VKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP---SIAKASTILLALRERDLDEDVRVR  356 (1266)
T ss_pred             HHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc---hhhhHHHHHHHHHhhcCChhhhhe
Confidence            9999887655443222  34466667777889999999999988776544311   1112111 1222224555555543


Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014        304 AANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       304 a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~  356 (615)
                      ....+..    +......-.+.+.++..+.+.+.|..|.||..|...+..+-+
T Consensus       357 ~~v~i~~----~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  357 TQVVIVA----CDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             eeEEEEE----eehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            2211111    111111111223377777888999999999999998887765

>KOG1949|consensus

Probab=97.45  E-value=0.13  Score=52.84  Aligned_cols=144  Identities=20%  Similarity=0.224  Sum_probs=105.5

Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch---hh----hHHHHHHHhhcCCcHHHHHHHHHHHHHHHh----
Q psy14014        245 LVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT---KT----DLVQAFQMLLKDSEAEVRAAAANKVRDFCQ----  313 (615)
Q Consensus       245 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~----  313 (615)
                      ..-|++...++-++..||..++..+-.+....+++..   ++    .-...+.++++|+.|.||..|+..+..+..    
T Consensus       174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            3557777888899999999999999888877776642   22    234457789999999999988877655443    


Q ss_pred             hccccchhHHHHHhhHHHH-HHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        314 NLDAYNQENIIMTYILPYV-KDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       314 ~~~~~~~~~~~~~~l~p~l-~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                      .+|+     ..+..++..+ ..+..|....||.+..+.+..+...--.-...++++|.+-..+.|.+..||.++..-+..
T Consensus       254 ~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  254 MIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            2332     2233344433 345667888999999998888765443345677899999999999999999999887765


Q ss_pred             h
Q psy14014        393 V  393 (615)
Q Consensus       393 l  393 (615)
                      +
T Consensus       329 i  329 (1005)
T KOG1949|consen  329 I  329 (1005)
T ss_pred             H
Confidence            4

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.42  E-value=0.37  Score=57.07  Aligned_cols=314  Identities=11%  Similarity=0.126  Sum_probs=168.0

Q ss_pred             HHHHHHhHHHHHHHhch------hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh------hHHHhHHHHHH
Q psy14014        184 RRAAAGKLGELAKVVEV------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS------DVEQLVMPTLR  251 (615)
Q Consensus       184 R~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~  251 (615)
                      |..++.-|.+++.+--.      ...|..+-+.|.+...+.+..++..|+..|..++..+-+.      .+...++..+.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            66677777777654322      3345556667777666777889999999988887755432      22334444444


Q ss_pred             Hh-cCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc-cch-hHHHHH
Q psy14014        252 QC-SGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA-YNQ-ENIIMT  326 (615)
Q Consensus       252 ~~-~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~-~~~~~~  326 (615)
                      .. .+..+..+|..+++++..+....+....  -..++.++.....++++.+-..|...+..+....-. -.. ......
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            43 3456779999999999998876554432  234666777677788888888888888776653111 000 001223


Q ss_pred             hhHHHHHHhhCCC-CHHHHHHHHHHHHhhchhh-----------------------------------cchhhhhhhHHH
Q psy14014        327 YILPYVKDLVADP-NQHVKSALASVIMGLSPIL-----------------------------------GKHNTVDHLLPL  370 (615)
Q Consensus       327 ~l~p~l~~~~~d~-~~~vR~~~~~~l~~l~~~~-----------------------------------g~~~~~~~l~p~  370 (615)
                      .++.++.+..+.. +.++--.++..+..++..+                                   +.+......+|.
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            3444444433321 2222222333333221111                                   011112234555


Q ss_pred             HHH---hhcCCChhHHHHHHHhhhHhhhhh----chhHHHHHHHHHhh-hhhhhhccccchhhhhhhh---HHHH---Hh
Q psy14014        371 FLS---QLKDECPEVRLNIISNLDCVNEVI----GIQQWRVRLAIIEY-MPLLAGQLGVEFFDEKLNA---LSIV---EL  436 (615)
Q Consensus       371 l~~---~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~i~~~-l~~l~~~~~~~~~~~~l~~---~~i~---~~  436 (615)
                      +..   +..|+..+||..|+..|=.+....    +.+.|..-..  .+ .|.+. .+...........   ..+.   .-
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~--~VLFPIFd-~l~~~~~~~~~~~~~~~~~~~~~~~ 1425 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFE--SVLFPIFD-YVRHAIDPSGGDEPEGQGVDGDQGE 1425 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH--HHHHHHHH-HHHHhhccccccccccccccccccc
Confidence            554   456888999999999876555433    4455653220  01 11111 0000000000000   0000   00


Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhChHh-----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGVEF-----FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE  501 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~  501 (615)
                      .+...| +.++...++..+...+...+     ..+.++..+..++..++..+-..+..++..++...|..
T Consensus      1426 ~e~~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076       1426 LDQDAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence            011224 46666677777666554422     23444444555566788889999999999999877653

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.41  E-value=0.084  Score=49.40  Aligned_cols=233  Identities=11%  Similarity=0.085  Sum_probs=138.1

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhh----hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhc--hhHHHHH
Q psy14014        332 VKDLVADPNQHVKSALASVIMGLSPILGKHNTVD----HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG--IQQWRVR  405 (615)
Q Consensus       332 l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~----~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~  405 (615)
                      |...++++++.+|..+...|+.+...+.++....    .+...+...+.  ++..-..++.++..+.+.-.  .+.. . 
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~-~-   79 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESA-V-   79 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhH-H-
Confidence            4456788999999999999988887776544433    33444444443  34444444666666653221  1110 0 


Q ss_pred             HHHHhhhhhhhhccccchhhhhhhhHHHHHhh--hcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcC-Ccc
Q psy14014        406 LAIIEYMPLLAGQLGVEFFDEKLNALSIVELA--EDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLV-DHV  480 (615)
Q Consensus       406 ~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-d~~  480 (615)
                          ..+.                  .+.+..  ..-....|..+.+.+..+........  ..+.++..+.+.+. .++
T Consensus        80 ----~i~~------------------~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkD  137 (262)
T PF14500_consen   80 ----KILR------------------SLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKD  137 (262)
T ss_pred             ----HHHH------------------HHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCC
Confidence                0011                  111111  12233467778887777776543221  12334444455443 345


Q ss_pred             hHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhh--------cCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHh
Q psy14014        481 YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS--------RDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN  552 (615)
Q Consensus       481 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~--------~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  552 (615)
                      +..=.-+...+..+...+......+.+...+.-.+        +|+..-.|.....++....  ...+.|.+..+|.+..
T Consensus       138 PRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl--~s~~~fa~~~~p~Lle  215 (262)
T PF14500_consen  138 PRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCL--SSTPLFAPFAFPLLLE  215 (262)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh--cCcHhhHHHHHHHHHH
Confidence            55555667777777776653323333333333211        3444445666666665543  2335678899999998


Q ss_pred             hCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014        553 MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  592 (615)
Q Consensus       553 ~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  592 (615)
                      -+....+.++..+.++|...++.++.....+...++...+
T Consensus       216 KL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l  255 (262)
T PF14500_consen  216 KLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL  255 (262)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999877777777777665

>KOG1525|consensus

Probab=97.40  E-value=0.084  Score=59.63  Aligned_cols=315  Identities=19%  Similarity=0.185  Sum_probs=166.5

Q ss_pred             HHHHHhccccCCCCCcchhhhchHHHhh-----hhcCchhHHHHHHHHHHHHHHhhcCh------hHHhhhHHHHHHH--
Q psy14014         70 ALAEQLGTFTPNVGGPEYVHCLLPPLES-----LATVEETVVRDKAVESLRLISAQHSP------HDLEAHFVPLVQR--  136 (615)
Q Consensus        70 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----l~~~~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~l~~l~~--  136 (615)
                      .+..+|..+-+   ++.-...+.|+...     ++.+.+..||...+.++..+.....+      ..+...+.=++..  
T Consensus        28 ~l~~~l~~~~q---d~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~  104 (1266)
T KOG1525|consen   28 KLANCLASLDQ---DNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFS  104 (1266)
T ss_pred             HHHHHHhhccc---CchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHh
Confidence            55566665544   22233445555443     45667889999888888887776654      2222222222222  


Q ss_pred             -hhc--CCCcchhhhHHhh-----hhhhccCC-ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhh
Q psy14014        137 -LAS--GDWFTSRTSACGL-----FSVCYPRV-TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI  207 (615)
Q Consensus       137 -l~~--~~~~~~r~~a~~~-----l~~~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  207 (615)
                       +..  ++++..+..-...     +..++... +++...+++..|..+..++-+.-=......++.+....  +.....+
T Consensus       105 gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~  182 (1266)
T KOG1525|consen  105 GLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSEL  182 (1266)
T ss_pred             hccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHH
Confidence             222  2223222111111     22222222 34556677777777775543322222333333333221  1223334


Q ss_pred             HHHH-HHhh---ccCchhHHHHHHHHHHHHHhhcChh-----------------------------------hHHHhHHH
Q psy14014        208 IPMF-VNLA---QDEQDSVRLLAVEACVSIASLLSQS-----------------------------------DVEQLVMP  248 (615)
Q Consensus       208 l~~l-~~~~---~d~~~~vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~l~~  248 (615)
                      +.++ ..++   .|....-+..|...+..++..+...                                   .....++|
T Consensus       183 L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip  262 (1266)
T KOG1525|consen  183 LDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIP  262 (1266)
T ss_pred             HHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            4433 2333   2444455555555555554443210                                   01223567


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      .|..-+...+..+|..+...+|.+....+....  .+.+...++..+.|...+||..+++....++.+-+.....    .
T Consensus       263 ~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~----~  338 (1266)
T KOG1525|consen  263 QLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA----S  338 (1266)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH----H
Confidence            777767777888999999999987654333222  4577888889999999999999999999888763322110    1


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      ...-.+.....|++.++|..+  .+......--.-.+.+.++..+-+.+.|..+.||..|++.|..+.+
T Consensus       339 ~~~~~l~~~~~D~~~rir~~v--~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  339 TILLALRERDLDEDVRVRTQV--VIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHhhcCChhhhheeeE--EEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            122233333444444444322  1111100000011122256666777889999999999999988866

>KOG1967|consensus

Probab=97.38  E-value=0.0054  Score=64.52  Aligned_cols=148  Identities=13%  Similarity=0.136  Sum_probs=116.8

Q ss_pred             hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch---hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        240 SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT---KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       240 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      +.+...++|.+.+........+|......|..+....+.+..   .+.++|.+++.+.=++..||..+...+..+....+
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            345567899999888755666788888888888777766543   35799999999999999999999999988776544


Q ss_pred             ccchhHHHHHhhHHHHHHhhCCCC---HHHHHHHHHHHHhhchhhcch---hhhhhhHHHHHHhhcCCChhHHHHHHHh
Q psy14014        317 AYNQENIIMTYILPYVKDLVADPN---QHVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISN  389 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~~d~~---~~vR~~~~~~l~~l~~~~g~~---~~~~~l~p~l~~~l~d~~~~vr~~a~~~  389 (615)
                      .-.  ..+...++|++..+-.|.+   ..||..++.+++.+.+.....   .+.+.++..+.+.|.|+-.-||..|+++
T Consensus       942 tL~--t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  942 TLQ--TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             ccc--hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            322  2467889999998887776   679999999999999865542   3466788899999999878899988875

>KOG1949|consensus

Probab=97.35  E-value=0.011  Score=60.27  Aligned_cols=145  Identities=20%  Similarity=0.225  Sum_probs=108.8

Q ss_pred             HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh----HHHH----HHHHHHHhCCCChHHHHHHHHhHHHHHH----H
Q psy14014        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV----KAEL----RSHFRNLCQDDTPMVRRAAAGKLGELAK----V  197 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~----~~~l----~~~l~~l~~d~~~~vR~~a~~~l~~l~~----~  197 (615)
                      .-|.+.+-.+..+..+|..|+.++-.+++..+++.    ...+    ...+..++.|+-+.||..+...+..+..    .
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            45777777788889999999999988888876543    2222    2356788999999999998876655443    3


Q ss_pred             hchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy14014        198 VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQK  274 (615)
Q Consensus       198 ~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~  274 (615)
                      +++.....-+--++-.+..|...+||.+..+.+..+.-.-..-...++++|.+.-.+.|.+.+||-++.+.+..+-.
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            34433333333344556667888999999999999887766667778899988889999999999999998877643

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0011  Score=65.56  Aligned_cols=147  Identities=16%  Similarity=0.124  Sum_probs=102.2

Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHhChHHhhhchhH
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTW-LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIP  509 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  509 (615)
                      ..|.+++.|.+...|...+-+++.-.-..|..    .++..++.. .+|.+..||.+|+.++|-++-.  +    ...++
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D----~~~lv  588 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--D----RDLLV  588 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEec--C----cchhh
Confidence            45667788888888887766655443333432    234444444 7899999999999998877632  1    23555


Q ss_pred             HHHhh-hcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHH
Q psy14014        510 KVVAM-SRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPA  588 (615)
Q Consensus       510 ~l~~~-~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  588 (615)
                      ...++ ..+.|+.+|...+.++|..+...|..    .....|..++.|++.-||+.|+-+++.|..++.+ ...+.+..+
T Consensus       589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~-~Lnp~v~~I  663 (926)
T COG5116         589 GTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNP-ELNPNVKRI  663 (926)
T ss_pred             HHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc-ccChhHHHH
Confidence            55554 45669999999999999987655543    3567788888999999999999999999866543 333444444


Q ss_pred             Hhhh
Q psy14014        589 LDKL  592 (615)
Q Consensus       589 l~~l  592 (615)
                      .+++
T Consensus       664 ~k~f  667 (926)
T COG5116         664 IKKF  667 (926)
T ss_pred             HHHH
Confidence            4443

>KOG0414|consensus

Probab=97.33  E-value=0.39  Score=52.81  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=113.8

Q ss_pred             HHHHHHhhchh---hcchhhhhhhHHHHHHhhcC----CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhcc
Q psy14014        347 LASVIMGLSPI---LGKHNTVDHLLPLFLSQLKD----ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQL  419 (615)
Q Consensus       347 ~~~~l~~l~~~---~g~~~~~~~l~p~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~  419 (615)
                      .+..+..+++-   +|+......+.|.+.+.++.    .+++.+.+|--+|+.++-.                       
T Consensus       897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-----------------------  953 (1251)
T KOG0414|consen  897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-----------------------  953 (1251)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-----------------------
Confidence            44555555542   56566677788999888854    3678888888777765321                       


Q ss_pred             ccchhhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Q psy14014        420 GVEFFDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF  498 (615)
Q Consensus       420 ~~~~~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  498 (615)
                      ...|..+.+  |.+...++ .+++++|.-++-+++.++-.++.  +.+..-+.+...+.|++..||++|+..+..+.-+ 
T Consensus       954 Sa~fces~l--~llftimeksp~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn- 1028 (1251)
T KOG0414|consen  954 SAEFCESHL--PLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN- 1028 (1251)
T ss_pred             hHHHHHHHH--HHHHHHHhcCCCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-
Confidence            112222333  66777665 78999999999999999876654  2344667788889999999999999998887643 


Q ss_pred             ChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhh
Q psy14014        499 GSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       499 ~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~  536 (615)
                      +. ...+-.++.+..++.|++..+|..|=..+.++...
T Consensus      1029 dm-iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1029 DM-IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             hh-hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            11 11234667777788999999998888777777654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.28  E-value=0.053  Score=58.75  Aligned_cols=153  Identities=16%  Similarity=0.166  Sum_probs=97.5

Q ss_pred             CCchHHHHHHHHhHHHHhhhChH----------------hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLGVE----------------FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA  503 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~  503 (615)
                      .+..+|.+++-+++.+...+-..                .+.+.+...+.......+...+..++.+||++..       
T Consensus       447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------  519 (618)
T PF01347_consen  447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------  519 (618)
T ss_dssp             T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred             CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence            34568888888888887643211                1223344444444455667788889999888742       


Q ss_pred             hhchhHHHHhhhcCC---CchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh
Q psy14014        504 QSTVIPKVVAMSRDQ---NYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV  580 (615)
Q Consensus       504 ~~~i~~~l~~~~~d~---~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~  580 (615)
                       ...++.+...+.+.   ...+|..|+.++..++..+ ++.+.+.++|++.+  ...+++||..|...|-..-+.     
T Consensus       520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~P~-----  590 (618)
T PF01347_consen  520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMN--TTEDPEVRIAAYLILMRCNPS-----  590 (618)
T ss_dssp             -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT--------
T ss_pred             -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCCC-----
Confidence             35778888877665   6789999999999886554 34445566666664  345678999998777664321     


Q ss_pred             HHhhHHHHHhhhcCCCCccHHHHHHHHHH
Q psy14014        581 IQSQVKPALDKLNGDTDVDVKYFAQEAIS  609 (615)
Q Consensus       581 ~~~~~~~~l~~l~~d~d~~v~~~a~~a~~  609 (615)
                       ...+..+...+..|++.+|+.+....|+
T Consensus       591 -~~~l~~i~~~l~~E~~~QV~sfv~S~Lk  618 (618)
T PF01347_consen  591 -PSVLQRIAQSLWNEPSNQVASFVYSHLK  618 (618)
T ss_dssp             -HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhCchHHHHHHHHHhcC
Confidence             2346666677789999999999887764

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1517|consensus

Probab=97.27  E-value=0.02  Score=61.31  Aligned_cols=134  Identities=16%  Similarity=0.208  Sum_probs=97.2

Q ss_pred             hHHHHHHHHhHHHHhhh--ChH-hHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHhChHHhh---hchhHHHHhhh
Q psy14014        443 RVRLAIIEYMPLLAGQL--GVE-FFDEKLNALCMTWLVDH-VYAIREAATLNLKKLVEQFGSEWAQ---STVIPKVVAMS  515 (615)
Q Consensus       443 ~vr~~~~~~l~~l~~~~--~~~-~~~~~l~~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~  515 (615)
                      .-|..++-.|..|..++  |.+ -+...++..++..++|+ .+-+|...+-+||.+-..+....+.   ...-..|...+
T Consensus       572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L  651 (1387)
T KOG1517|consen  572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL  651 (1387)
T ss_pred             HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh
Confidence            56777777888888766  332 24467888999999995 7889999999999998876543221   22445677788


Q ss_pred             cCCCchHHHHHHHHHHHHHhhh----Chhh--H------------HHhhH----HHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        516 RDQNYLHRMTCLFCINVLAEAC----GPTV--T------------ANFLL----PTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       516 ~d~~~~~R~~a~~~l~~l~~~~----~~~~--~------------~~~i~----~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      .|+.+.||.+|+.|||.+....    ++..  .            .+...    ..+..+++|..+-||..+.-+|..+.
T Consensus       652 sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  652 SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            9999999999999999998652    1110  0            11122    25666789999999999999998887


Q ss_pred             Hhh
Q psy14014        574 PIL  576 (615)
Q Consensus       574 ~~~  576 (615)
                      -.+
T Consensus       732 ~g~  734 (1387)
T KOG1517|consen  732 VGY  734 (1387)
T ss_pred             Hhh
Confidence            544

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.22  E-value=0.19  Score=47.06  Aligned_cols=235  Identities=12%  Similarity=0.161  Sum_probs=134.4

Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh--hcchhhhhh
Q psy14014        289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDH  366 (615)
Q Consensus       289 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~--~g~~~~~~~  366 (615)
                      +-..+.++++.+|..|+..|..++..+++......-.+.++..+...+.|  +..-..++.++..+...  ++.+. ...
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~-~~~   80 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES-AVK   80 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh-HHH
Confidence            34567788889999999999999888876543333455666666666643  33333335666555532  11111 223


Q ss_pred             hHHHHHHhhc--CCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh-hcCCch
Q psy14014        367 LLPLFLSQLK--DECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA-EDSKWR  443 (615)
Q Consensus       367 l~p~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~-~~~~~~  443 (615)
                      ++..+.+...  .-...+|..+.+.+..+.+.....           +    ..+|.+|.      ..+.+.. ..+++|
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~-----------l----~~~~~~fv------~~~i~~~~gEkDPR  139 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREA-----------L----QSMGDDFV------YGFIQLIDGEKDPR  139 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHH-----------H----HhchhHHH------HHHHHHhccCCCHH
Confidence            3333333222  123467888877777665443211           1    12222222      1222333 235667


Q ss_pred             HHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhh
Q psy14014        444 VRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL--------VDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS  515 (615)
Q Consensus       444 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  515 (615)
                      --..+.+.+..+...+....+.+.++..+.-..        +|+..--|+.-...+.....  +...+.+..+|.+++-+
T Consensus       140 nLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL  217 (262)
T PF14500_consen  140 NLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKL  217 (262)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHH
Confidence            667777778878777765545555555444321        24322222222222222211  22335567899999988


Q ss_pred             cCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHH
Q psy14014        516 RDQNYLHRMTCLFCINVLAEACGPTVTANFLLPT  549 (615)
Q Consensus       516 ~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~  549 (615)
                      .+..+.++..++.++...++.+|.....+++.+.
T Consensus       218 ~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i  251 (262)
T PF14500_consen  218 DSTSPSVKLDSLQTLKACIENYGADSLSPHWSTI  251 (262)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            8999999999999999999999887666555443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.13  E-value=0.084  Score=56.52  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             CchHHHHHHHHhHHHHhhhCh------HhHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHH
Q psy14014        441 KWRVRLAIIEYMPLLAGQLGV------EFFDEKLNALCMTW----LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPK  510 (615)
Q Consensus       441 ~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~----l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~  510 (615)
                      ...+|..++-+++.+......      ....+.+.+.+.+.    ..+.+...+..++++||++..        ...++.
T Consensus       410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------~~~i~~  481 (574)
T smart00638      410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--------PSSIKV  481 (574)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--------hhHHHH
Confidence            445788888888888764321      11223455555443    344566667788888887642        123344


Q ss_pred             HHhhhc---CCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHH
Q psy14014        511 VVAMSR---DQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP  587 (615)
Q Consensus       511 l~~~~~---d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  587 (615)
                      +...+.   ..+..+|..|+++|..+++..+ ....+.+++++.+  .+.+++||..|...|-...+.      ...+..
T Consensus       482 l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~------~~~l~~  552 (574)
T smart00638      482 LEPYLEGAEPLSTFIRLAAILALRNLAKRDP-RKVQEVLLPIYLN--RAEPPEVRMAAVLVLMETKPS------VALLQR  552 (574)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCC------HHHHHH
Confidence            443332   3466899999999999886554 3344555565543  457788999998888775332      235666


Q ss_pred             HHhhhcCCCCccHHHHHHHHH
Q psy14014        588 ALDKLNGDTDVDVKYFAQEAI  608 (615)
Q Consensus       588 ~l~~l~~d~d~~v~~~a~~a~  608 (615)
                      +...+..|++.+|+.+....+
T Consensus       553 ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      553 IAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHHhhcCcHHHHHHhHHhh
Confidence            777778899999999887655

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.12  E-value=0.12  Score=47.82  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             CCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhh-ccCchhHHHHHHHHHHHHHh
Q psy14014        178 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIAS  235 (615)
Q Consensus       178 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~  235 (615)
                      +..++.....+.++..+++..+.  ...++++.+...+ ++.++.++..+++.+..+++
T Consensus        95 ~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen   95 DEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             cchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            45677777777888899887766  6788999999999 78889999999999999884

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.05  E-value=0.088  Score=52.01  Aligned_cols=127  Identities=18%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             chHHHHHHHHHHHHHHHHhChHHhh--hchhHHHHh-hhc--CCCchHHHHHHHHHHHHHhhhC---------------h
Q psy14014        480 VYAIREAATLNLKKLVEQFGSEWAQ--STVIPKVVA-MSR--DQNYLHRMTCLFCINVLAEACG---------------P  539 (615)
Q Consensus       480 ~~~vR~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~-~~~--d~~~~~R~~a~~~l~~l~~~~~---------------~  539 (615)
                      ...-|.+|...+..+++.++.....  ..++..+++ ...  ..+|+.+.+|+..++.++....               .
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            4567888888888888776543211  112222222 112  3478888889999998885431               1


Q ss_pred             hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHH
Q psy14014        540 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAI  608 (615)
Q Consensus       540 ~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~  608 (615)
                      +++.++++|.|. --.+..|-+|-.|++.+..+-..++.+.... +.|.+...+.+++..|+.+|..|+
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-IFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHhCCCCcchhhhhhhhC
Confidence            245677888887 4445667788899999988888777655544 455555555788889999988764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.05  E-value=0.44  Score=48.21  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCc--chhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhc
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCL   91 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l   91 (615)
                      +..++-...++|.++|...++.|..++.-+++  +...+-|+..+..-+-|-+ .||+.|..+|.++-+.-+.++  ..+
T Consensus        93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~  170 (885)
T COG5218          93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI  170 (885)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence            66777788999999999999999999887776  4455666666655444544 599999999988765433332  222


Q ss_pred             hHHHhh-hhcCchhHHHHHHHH
Q psy14014         92 LPPLES-LATVEETVVRDKAVE  112 (615)
Q Consensus        92 ~~~l~~-l~~~~~~~vr~~a~~  112 (615)
                      ..+|.. +..|+..+||..|+-
T Consensus       171 ~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         171 VNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHH
Confidence            233333 447889999999874

>KOG1993|consensus

Probab=97.03  E-value=0.58  Score=49.23  Aligned_cols=234  Identities=17%  Similarity=0.187  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh------------cCCcHHHHHHHHHHH-HHHHhhcccc-chhHHHHH
Q psy14014        261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL------------KDSEAEVRAAAANKV-RDFCQNLDAY-NQENIIMT  326 (615)
Q Consensus       261 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------------~d~~~~vr~~a~~~l-~~~~~~~~~~-~~~~~~~~  326 (615)
                      +|-++-..+-.+...++     +-+.|.+.+.+            +|-+.-+++.|+.+- +.-+..+.+. ....++.+
T Consensus       413 lRPCaE~L~~~lF~~ys-----qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~  487 (978)
T KOG1993|consen  413 LRPCAEKLYKDLFDAYS-----QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE  487 (978)
T ss_pred             cchhHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            55555544444444332     34555555544            233445666555543 3322222221 22346778


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCC-ChhHHHHHHHhhhHhhhhh--chhHHH
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVI--GIQQWR  403 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~-~~~vr~~a~~~l~~l~~~~--~~~~~~  403 (615)
                      .++|-+.. ..+...-.|+-++..++.-..+--+......+-..+.++++|. +-.||..+++++...+.-.  ..+.  
T Consensus       488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds--  564 (978)
T KOG1993|consen  488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS--  564 (978)
T ss_pred             hhCHHhhh-cccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh--
Confidence            88887762 2223334577777777765543333334445566788899987 5678999999998776432  1111  


Q ss_pred             HHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh--HHHH---HHHHHHHhcC
Q psy14014        404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF--FDEK---LNALCMTWLV  477 (615)
Q Consensus       404 ~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~---l~~~l~~~l~  477 (615)
                             ++|.+          +.+. ..+.++++. ..-..|...+..++.+....+...  +...   ++|.+++.-.
T Consensus       565 -------Flp~l----------enlf-~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~  626 (978)
T KOG1993|consen  565 -------FLPYL----------ENLF-VLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE  626 (978)
T ss_pred             -------hhhhH----------HHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Confidence                   12211          1111 122233321 122355667777777766555432  2222   3343333322


Q ss_pred             CcchHHHHHHHHHHHHHHHHhChHHh-hhchhHHHHhhhcCCCch
Q psy14014        478 DHVYAIREAATLNLKKLVEQFGSEWA-QSTVIPKVVAMSRDQNYL  521 (615)
Q Consensus       478 d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~i~~~l~~~~~d~~~~  521 (615)
                       +..-+|.+-+.++.+++..+|.... ...++-.++++..|++..
T Consensus       627 -~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP  670 (978)
T KOG1993|consen  627 -EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSP  670 (978)
T ss_pred             -cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCC
Confidence             4667999999999999999986422 223455566667776543

>KOG2973|consensus

Probab=97.01  E-value=0.28  Score=45.51  Aligned_cols=255  Identities=15%  Similarity=0.160  Sum_probs=133.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh---hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHH
Q psy14014        331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLA  407 (615)
Q Consensus       331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~---~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  407 (615)
                      -+..++.+.++.||..+...+..+... |...+   ....++.+.+++++..+  -+.|+.++..+.+   ....++.+-
T Consensus         7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq---~~~l~~~ll   80 (353)
T KOG2973|consen    7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ---KEELRKKLL   80 (353)
T ss_pred             HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh---hHHHHHHHH
Confidence            456678899999999999888776554 33222   33578888889888655  3344444443332   232333320


Q ss_pred             HHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh---------HHHHHHHHHHHhcCC
Q psy14014        408 IIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF---------FDEKLNALCMTWLVD  478 (615)
Q Consensus       408 i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---------~~~~l~~~l~~~l~d  478 (615)
                       -.++                  ..++..+-|+.|-.-...+..+..+++.=+.-.         ..+.++. ++....|
T Consensus        81 -~~~~------------------k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~-l~~~~~d  140 (353)
T KOG2973|consen   81 -QDLL------------------KVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMR-LARAFCD  140 (353)
T ss_pred             -HHHH------------------HHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHH-HHHHHhC
Confidence             0011                  244455556666665666666655543111100         0122333 3333334


Q ss_pred             cchHHHHHHHHHHHHHHHHhC-----hHHhh--hc-hhHHHHhhhcCCCchHHHHHHHHHHHHHhh--------------
Q psy14014        479 HVYAIREAATLNLKKLVEQFG-----SEWAQ--ST-VIPKVVAMSRDQNYLHRMTCLFCINVLAEA--------------  536 (615)
Q Consensus       479 ~~~~vR~~a~~~l~~l~~~~~-----~~~~~--~~-i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~--------------  536 (615)
                      +... ..+-+.-++.+...++     ...+.  +. ....+..+-...+...|.+.+.++.+.+-.              
T Consensus       141 ~~~n-~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~l  219 (353)
T KOG2973|consen  141 KSYN-AYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINL  219 (353)
T ss_pred             cccc-cccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHH
Confidence            4433 3333333333333332     12111  11 222344444423333344566666664321              


Q ss_pred             --------hChhhHHH---hhHHHHHhhC-----CCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhh-cCCCC
Q psy14014        537 --------CGPTVTAN---FLLPTVLNMA-----GDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKL-NGDTD  597 (615)
Q Consensus       537 --------~~~~~~~~---~i~~~l~~~~-----~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l-~~d~d  597 (615)
                              .|++.+.+   .-+|.=.+++     .|+++++|.....++-.++..-...  .....+-|+++.+ ...+|
T Consensus       220 Lp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~d  299 (353)
T KOG2973|consen  220 LPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEED  299 (353)
T ss_pred             HHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCc
Confidence                    12221111   1112111333     3789999999999999998654332  3356688999998 67789


Q ss_pred             ccHHHHHHHHHHHHh
Q psy14014        598 VDVKYFAQEAISSIA  612 (615)
Q Consensus       598 ~~v~~~a~~a~~~~~  612 (615)
                      ++++..+......+.
T Consensus       300 ed~~~ace~vvq~Lv  314 (353)
T KOG2973|consen  300 EDIREACEQVVQMLV  314 (353)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888776653

>KOG1822|consensus

Probab=96.97  E-value=1.2  Score=51.80  Aligned_cols=172  Identities=17%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             hHHhhhhhhccCCChhhHHHHHHHHHHHhCCC-C---hHHHHHHHH--hHHHHHHH---------hchhhhHhhhHHHHH
Q psy14014        148 SACGLFSVCYPRVTAGVKAELRSHFRNLCQDD-T---PMVRRAAAG--KLGELAKV---------VEVDYLKTDIIPMFV  212 (615)
Q Consensus       148 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~-~---~~vR~~a~~--~l~~l~~~---------~~~~~~~~~ll~~l~  212 (615)
                      .+..+++.++++++..++..++..+....... .   .-|+..+..  ++....+.         ++++.....-+..+.
T Consensus       803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~  882 (2067)
T KOG1822|consen  803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV  882 (2067)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence            35567778888888777777777665554432 2   223333333  33222222         233334444445555


Q ss_pred             HhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCccchhhhH---HHH
Q psy14014        213 NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGPEITKTDL---VQA  288 (615)
Q Consensus       213 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l---~~~  288 (615)
                      ..+...++-.|.++.+++..++...+...+...+.+.+..-+.+ .++..|..-..++|.+-++.|.-...+++   +.+
T Consensus       883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i  962 (2067)
T KOG1822|consen  883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI  962 (2067)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence            55667888999999999999999999887777666666554444 55666777777788887776654333343   447


Q ss_pred             HHHhhcCCcH-HHHHHHHHHHHHHHhhccccc
Q psy14014        289 FQMLLKDSEA-EVRAAAANKVRDFCQNLDAYN  319 (615)
Q Consensus       289 l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~  319 (615)
                      +..+.+|+++ .|+..++.++..+....++..
T Consensus       963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~  994 (2067)
T KOG1822|consen  963 LLALATDSTSPVVQTWSLHALALILDSSGPMF  994 (2067)
T ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHcCCCcee
Confidence            7778888875 999999999999888766554

>KOG2933|consensus

Probab=96.95  E-value=0.031  Score=51.68  Aligned_cols=138  Identities=13%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             HHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHH--HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhH
Q psy14014        432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIP  509 (615)
Q Consensus       432 ~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  509 (615)
                      .+.+.+++....|-.+++.+++.+...++.....  +.++-.++.--.+.+.-||+.|-.+|..+.....+.    .+++
T Consensus       133 ~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~  208 (334)
T KOG2933|consen  133 AVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLR  208 (334)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHH
Confidence            4556667777889999999999999988765432  222222222234557779999999999999876653    5778


Q ss_pred             HHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHH----HhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        510 KVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTA----NFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       510 ~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      .|+....+.++++|..++.|+......++-....    ....+.+.+-..|.-+.+|..+-..+....
T Consensus       209 ~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~  276 (334)
T KOG2933|consen  209 KLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELK  276 (334)
T ss_pred             HHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHH
Confidence            8888889999999999999888877766522222    223355555567777777765555444443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.88  E-value=0.29  Score=47.32  Aligned_cols=170  Identities=14%  Similarity=0.117  Sum_probs=100.8

Q ss_pred             HhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhh
Q psy14014        334 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMP  413 (615)
Q Consensus       334 ~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~  413 (615)
                      ..++..++.+|..+.+++|-.+- +++ ......++.+.+.++.++..|+..|++++..+....|.+......     -+
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~-----~~  106 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES-----DN  106 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh-----cc
Confidence            56788899999999999987653 333 233455777888887668999999999998887766654322211     00


Q ss_pred             hhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHh--hhCh-HhHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy14014        414 LLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAG--QLGV-EFFDEKLNALCMTWLVDHVYAIREAATLN  490 (615)
Q Consensus       414 ~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~--~~~~-~~~~~~l~~~l~~~l~d~~~~vR~~a~~~  490 (615)
                            +.......+. ..+.+.+.+.+..+|..+++.+..+.-  .+.. ......++-..++--..++..+|.+-..+
T Consensus       107 ------~~~~~~~~l~-~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  107 ------DESVDSKSLL-KILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             ------CccchHhHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence                  0000011111 356667777788899999999888643  2222 22222333323333344456777776666


Q ss_pred             HHHHHHHhC--hHHhhhchhHHHHhhhcC
Q psy14014        491 LKKLVEQFG--SEWAQSTVIPKVVAMSRD  517 (615)
Q Consensus       491 l~~l~~~~~--~~~~~~~i~~~l~~~~~d  517 (615)
                      +..++..-.  .....+.++|.+..+.+.
T Consensus       180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  180 FPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            666654221  122334566777665544

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=96.86  E-value=0.45  Score=49.18  Aligned_cols=67  Identities=9%  Similarity=0.013  Sum_probs=44.9

Q ss_pred             HhhhchhHHHHhhhcCC----CchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        502 WAQSTVIPKVVAMSRDQ----NYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       502 ~~~~~i~~~l~~~~~d~----~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      .+.+.+++.+.+.+.|.    ...+|..|.+.+..+...-.     ...-+.+.+..-|+.+..|.-+.++..++.
T Consensus       687 ~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD~-----~~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         687 EFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKDS-----SGKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhccc-----cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            34556777777766543    55678888888877542210     123456778888999999988888777663

>KOG1993|consensus

Probab=96.83  E-value=0.61  Score=49.04  Aligned_cols=267  Identities=14%  Similarity=0.110  Sum_probs=135.3

Q ss_pred             ccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCc-hhHHHHHHHHHHHHHHhhcChhHHh
Q psy14014         51 GELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHDLE  127 (615)
Q Consensus        51 ~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~  127 (615)
                      +.++|-+.  .+..+  ..|+.++-.+|..+..-...+..+-+...+.+++.|+ |..||..++.+++.......  ..+
T Consensus       487 ~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n--F~~  562 (978)
T KOG1993|consen  487 EALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN--FSE  562 (978)
T ss_pred             HhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc--CCh
Confidence            45555554  12222  3788898889887763222344455566678888887 77899999999988776653  223


Q ss_pred             hhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCC-CChHHHHHHHHhHHHHHHHhchh--hhH
Q psy14014        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVD--YLK  204 (615)
Q Consensus       128 ~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~--~~~  204 (615)
                      +.++|++..+.                               ..+.+++.. ...+-|-.++..++.+....++.  +..
T Consensus       563 dsFlp~lenlf-------------------------------~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~  611 (978)
T KOG1993|consen  563 DSFLPYLENLF-------------------------------VLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA  611 (978)
T ss_pred             hhhhhhHHHHH-------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            34555542211                               111122111 23345666666666666555432  223


Q ss_pred             hhhHHHHHHhhc--cCchhHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHhC
Q psy14014        205 TDIIPMFVNLAQ--DEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWR---VRYMVADKFTDLQKAVG  277 (615)
Q Consensus       205 ~~ll~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~---vR~~~~~~l~~l~~~~~  277 (615)
                      ..++.++..+.+  .+.+-.|.+.+.++..+...++.+  .+.+.+.|.+....+-.++.   .-.-..+..+.+.....
T Consensus       612 ~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~  691 (978)
T KOG1993|consen  612 STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ  691 (978)
T ss_pred             HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc
Confidence            344444444433  356678999999999999998864  44566777665443322332   22233333333333221


Q ss_pred             cc-chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhh
Q psy14014        278 PE-ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL  354 (615)
Q Consensus       278 ~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l  354 (615)
                      .- ...-.+.|.+...++-.....| .+...+..++-..... ..+.+...+...+.+++.|-..+--.+.++.+..+
T Consensus       692 ~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveil  767 (978)
T KOG1993|consen  692 KLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEIL  767 (978)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            10 0011455555555544443333 2333443333222211 11123344455555555543333333444444333

>KOG0392|consensus

Probab=96.80  E-value=0.078  Score=58.17  Aligned_cols=228  Identities=17%  Similarity=0.133  Sum_probs=124.9

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHH------------HhhcCC-cHHHHHHHHHHHHHHHhh
Q psy14014        248 PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQ------------MLLKDS-EAEVRAAAANKVRDFCQN  314 (615)
Q Consensus       248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~------------~~l~d~-~~~vr~~a~~~l~~~~~~  314 (615)
                      ..+...+-++.|.+|..++-.+-.+...-++......+-..+.            ++..|+ ...||++++++|+.+..+
T Consensus        80 e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~  159 (1549)
T KOG0392|consen   80 EELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKH  159 (1549)
T ss_pred             HHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHh
Confidence            3334444557777777777666666655554433222111111            222222 247999999999999998


Q ss_pred             ccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        315 LDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       315 ~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                      +....     ....+..+..++.-++|++|..-+..+.........  ..+.+.+++.+...+.|.+..|+..|.+.+..
T Consensus       160 ~~~s~-----~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~  234 (1549)
T KOG0392|consen  160 MDESL-----IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVP  234 (1549)
T ss_pred             hhhHh-----hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhh
Confidence            75543     345666777778888999998776666544332221  23445677888889999999999999888765


Q ss_pred             hhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCc---hHHHHHHHHhHHH-HhhhChHh-HHHH
Q psy14014        393 VNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKW---RVRLAIIEYMPLL-AGQLGVEF-FDEK  467 (615)
Q Consensus       393 l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~---~vr~~~~~~l~~l-~~~~~~~~-~~~~  467 (615)
                      +..... ....+.      ++.+...         +. ..+.+ +.|-.|   .++....+.+... ...++..+ ....
T Consensus       235 ~~s~~v-~l~~~~------i~~lv~~---------l~-~~l~~-lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~  296 (1549)
T KOG0392|consen  235 APSIQV-KLMVQK------IAKLVHT---------LW-SFLLE-LDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVG  296 (1549)
T ss_pred             hhHHHH-hhhHhH------HHHHHHH---------HH-HHHHH-hhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhc
Confidence            543331 111111      1111000         00 01111 111111   1222222111111 00111111 1235


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Q psy14014        468 LNALCMTWLVDHVYAIREAATLNLKKLVEQF  498 (615)
Q Consensus       468 l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  498 (615)
                      +.|.++.++.+.-..+|.++...+..+...-
T Consensus       297 Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~  327 (1549)
T KOG0392|consen  297 LVPRLWPFLRHTISSVRRAALETLAMLLEAD  327 (1549)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7777888888888889999999988887653

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.75  E-value=0.11  Score=56.21  Aligned_cols=184  Identities=12%  Similarity=0.126  Sum_probs=99.7

Q ss_pred             CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC--
Q psy14014        179 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD--  256 (615)
Q Consensus       179 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d--  256 (615)
                      .....|+...++++....    .    .-+..+..++....-.-. .|...+..+.......  ...++..+..+++.  
T Consensus       376 ~~~~~r~~~lDal~~aGT----~----~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~P--t~e~l~~l~~L~~~~~  444 (618)
T PF01347_consen  376 KKEQARKIFLDALPQAGT----N----PAVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRP--TEELLKELFELAKSPK  444 (618)
T ss_dssp             --HHHHHHHHHHHHHH-S----H----HHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-------HHHHHHHHHHHT-HH
T ss_pred             cHHHHHHHHHHHHHHcCC----H----HHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCC--CHHHHHHHHHHHhCcc
Confidence            356778777777777543    1    223333444433221111 1334444444433110  12234444444443  


Q ss_pred             --CChHHHHHHHHHHHHHHHHhCcc------------chhhhHHHHHHHhh----cCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        257 --TSWRVRYMVADKFTDLQKAVGPE------------ITKTDLVQAFQMLL----KDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       257 --~~~~vR~~~~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                        .+..+|.+++.+++.+...+...            ...+.+++.+...+    ...+.+.+..++++|+.+..     
T Consensus       445 ~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----  519 (618)
T PF01347_consen  445 VKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----  519 (618)
T ss_dssp             HHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------
T ss_pred             ccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----
Confidence              45679999999999887654332            12334555554444    45666788899999997764     


Q ss_pred             chhHHHHHhhHHHHHHhhCCC---CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC--CChhHHHHHHHhh
Q psy14014        319 NQENIIMTYILPYVKDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNL  390 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~---~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d--~~~~vr~~a~~~l  390 (615)
                             +..+|.+...+.+.   ...+|.+|+.++..++....     ..+.+.+.+.+.+  ++.+||.+|+..+
T Consensus       520 -------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~l  584 (618)
T PF01347_consen  520 -------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLIL  584 (618)
T ss_dssp             -------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred             -------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence                   34566666666665   78999999999987754322     2345556665544  4578999998655

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.74  E-value=0.18  Score=48.77  Aligned_cols=139  Identities=14%  Similarity=0.209  Sum_probs=94.8

Q ss_pred             HHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh---------
Q psy14014        171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---------  241 (615)
Q Consensus       171 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---------  241 (615)
                      ++....+++++.||+.+++++|.++-.-. + .-...++.+...++.++..||..|++++..+....|.+.         
T Consensus        31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~  108 (298)
T PF12719_consen   31 LILPAVQSSDPAVRELALKCLGLCCLLDK-E-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE  108 (298)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhCh-H-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence            34567788999999999999998875432 2 234557777777776799999999999988877766421         


Q ss_pred             --HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchh-hhHHHHHHHhh----cCCcHHHHHHHHHHHHHHHh
Q psy14014        242 --VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK-TDLVQAFQMLL----KDSEAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       242 --~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l----~d~~~~vr~~a~~~l~~~~~  313 (615)
                        ....+...+.+.+.+.+..+|..+++.+.++.-.-.  ... +.++..++-..    ..++..+|+.-...++.++.
T Consensus       109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~--i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~  185 (298)
T PF12719_consen  109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR--ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS  185 (298)
T ss_pred             cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence              134577788888888899999999999998764321  112 34443333222    33456777765555665554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.73  E-value=0.39  Score=47.56  Aligned_cols=127  Identities=15%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc------CCcHHHHHHHHHHHHHHHhhcccc-----------chhH
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK------DSEAEVRAAAANKVRDFCQNLDAY-----------NQEN  322 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~-----------~~~~  322 (615)
                      ..|.+|++.+..++..++... ..-+...+...+.      ..++.-+.+|+..++.++......           .-.+
T Consensus       226 TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~  304 (370)
T PF08506_consen  226 TRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD  304 (370)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred             CcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence            457788888888887765432 1122233333333      356777888999888888654221           1134


Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHh
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN  389 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~  389 (615)
                      .+.+.++|-|. --.+..+-+|..+++.+...-..+.++.. ..++|.+.++|++++.-|+..|+.+
T Consensus       305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIA  369 (370)
T ss_dssp             HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred             HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhh
Confidence            56777888887 44567788999999999888777665543 4589999999999888888877654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2933|consensus

Probab=96.66  E-value=0.056  Score=50.04  Aligned_cols=171  Identities=12%  Similarity=0.136  Sum_probs=112.7

Q ss_pred             HHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHH---HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh--hc
Q psy14014        432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ--ST  506 (615)
Q Consensus       432 ~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~  506 (615)
                      .....+++.+|.....++..+..++.... +...+   .++..+.+-++.....|-.+|+.+++.+...++.....  +.
T Consensus        92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~  170 (334)
T KOG2933|consen   92 QALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD  170 (334)
T ss_pred             HHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778899999888888888765433 32232   34444566688888999999999999999988765432  11


Q ss_pred             hhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh----hHH
Q psy14014        507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQ  582 (615)
Q Consensus       507 i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~----~~~  582 (615)
                      .+-.|+.-....+..+|..+-++|..+..+..+..    +++.|...+....+.+|-.++.++.+....++-.    .+.
T Consensus       171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~  246 (334)
T KOG2933|consen  171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGS  246 (334)
T ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhH
Confidence            22222222345577899999999999998877755    4455555567788999999999998887766511    122


Q ss_pred             hhHHHHHhhhcCCCCccHHHHHHHH
Q psy14014        583 SQVKPALDKLNGDTDVDVKYFAQEA  607 (615)
Q Consensus       583 ~~~~~~l~~l~~d~d~~v~~~a~~a  607 (615)
                      ....+.+..=..|+-++++..|...
T Consensus       247 ~dl~~a~~~~~~d~Lp~~~~~a~~~  271 (334)
T KOG2933|consen  247 CDLSRAAQEQGSDKLPELREAARFV  271 (334)
T ss_pred             HHHHHHHHhhhcccccccccchhHH
Confidence            2233333333466666666555443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.64  E-value=0.036  Score=48.18  Aligned_cols=62  Identities=15%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014        295 DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       295 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~  356 (615)
                      +.+..+-...++++..++...+-..-...+...++..+..++.+.+..||.+++.+++.+..
T Consensus       113 E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  113 EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            44666777788888888776654433334555666666666666666777666666655543

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=1.3  Score=46.36  Aligned_cols=141  Identities=13%  Similarity=0.048  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhcC-----C---cchHHHHHHHHHHHHHHHHhCh-----HHhhhchhHHHHhhhcCCCchHHHHHHHHHHH
Q psy14014        466 EKLNALCMTWLV-----D---HVYAIREAATLNLKKLVEQFGS-----EWAQSTVIPKVVAMSRDQNYLHRMTCLFCINV  532 (615)
Q Consensus       466 ~~l~~~l~~~l~-----d---~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~  532 (615)
                      ..+++.+...++     +   .+....+.|+..+..+...+..     ......+++++...++++..-.|..+|..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            345565555552     2   3455667788887777763321     12334577888888899988899999999999


Q ss_pred             HHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh-hhhHHhhHHHHHhhh---cCCCCccHHHHHHH
Q psy14014        533 LAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE-TNVIQSQVKPALDKL---NGDTDVDVKYFAQE  606 (615)
Q Consensus       533 l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l---~~d~d~~v~~~a~~  606 (615)
                      +.+..........+.....+++++++-.|+..|+-|+..++.... ...+...+.+++++|   .++=+-|+-.-..+
T Consensus       487 ~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe  564 (970)
T COG5656         487 IEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME  564 (970)
T ss_pred             HHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH
Confidence            976666555666777888888999999999999999998875432 345667788888886   46656665544443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.50  E-value=1.1  Score=45.02  Aligned_cols=146  Identities=10%  Similarity=0.075  Sum_probs=74.0

Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhC--ccchhh
Q psy14014        210 MFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQCSGDT-SWRVRYMVADKFTDLQKAVG--PEITKT  283 (615)
Q Consensus       210 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~--~~~~~~  283 (615)
                      .|..+++.+++.+...|...+..+...-+.   ....+.+.+.+...+..+ +......++.++..+...-.  .-....
T Consensus       105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~  184 (429)
T cd00256         105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA  184 (429)
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence            334466677888888888888887654222   122334555666665543 34556666677766643211  001112


Q ss_pred             hHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchh
Q psy14014        284 DLVQAFQMLLKDS--EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       284 ~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~  357 (615)
                      ..++.+...++..  ..+..-.++.++=.+  .+.++..+......++|.+.+++++ .-++|-+-++.++.++...
T Consensus       185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~  259 (429)
T cd00256         185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLL--TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK  259 (429)
T ss_pred             cCHHHHHHHHhhccccHHHHHHHHHHHHHH--hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence            2445555555432  223333333322111  1222211111124577777777664 3456666777777777654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.43  E-value=1.2  Score=44.70  Aligned_cols=294  Identities=12%  Similarity=0.045  Sum_probs=139.6

Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCccch---hhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhccccchhHHHHHhh
Q psy14014        253 CSGDTSWRVRYMVADKFTDLQKAVGPEIT---KTDLVQAFQMLLKDS-EAEVRAAAANKVRDFCQNLDAYNQENIIMTYI  328 (615)
Q Consensus       253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  328 (615)
                      +++.+++.+...++..+..+...-.....   ...+.+.+...++.. +...+..++.++..++..  ++.+..++....
T Consensus       109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~--~~~R~~f~~~~~  186 (429)
T cd00256         109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV--DEYRFAFVLADG  186 (429)
T ss_pred             HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC--chHHHHHHHccC
Confidence            55677899999999998888653222111   122444555555433 345566677788777652  233322223334


Q ss_pred             HHHHHHhhCCC--CHHHHHHHHHHHHhhc--hhhcchhhhhhhHHHHHHhhcCCC-hhHHHHHHHhhhHhhhhhchhHHH
Q psy14014        329 LPYVKDLVADP--NQHVKSALASVIMGLS--PILGKHNTVDHLLPLFLSQLKDEC-PEVRLNIISNLDCVNEVIGIQQWR  403 (615)
Q Consensus       329 ~p~l~~~~~d~--~~~vR~~~~~~l~~l~--~~~g~~~~~~~l~p~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  403 (615)
                      ++.+..+++..  +.+..-.++-++..++  ...-.......++|.+.+.+++.. +.|-+-++..+..+........-.
T Consensus       187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~  266 (429)
T cd00256         187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK  266 (429)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence            55555555432  2344433333333332  110011112357888888887632 334444444555444322111100


Q ss_pred             HHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChH-----hHHHHHHHHHHHhcC-
Q psy14014        404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE-----FFDEKLNALCMTWLV-  477 (615)
Q Consensus       404 ~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~-  477 (615)
                      ...     .+.+.        +..+  +.+.+.++...|.-- ...+-+..+...+...     -|..+.-..-...|. 
T Consensus       267 ~~~-----~~~mv--------~~~l--~~~l~~L~~rk~~De-dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W  330 (429)
T cd00256         267 KTA-----ALQMV--------QCKV--LKTLQSLEQRKYDDE-DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW  330 (429)
T ss_pred             hhH-----HHHHH--------HcCh--HHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC
Confidence            000     00000        0001  223333333333211 1122222222111111     022222221111221 


Q ss_pred             ---Cc-chHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCCchHHHHHHHHHHHHHhhhChhh-HHH--hhHHH
Q psy14014        478 ---DH-VYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQNYLHRMTCLFCINVLAEACGPTV-TAN--FLLPT  549 (615)
Q Consensus       478 ---d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~~~~~~-~~~--~i~~~  549 (615)
                         |. ..--|+.+.+        +..+.  -.++..|.+++. +.++.+-..||.=+|.+++..+... ..+  .....
T Consensus       331 Sp~H~se~FW~EN~~k--------f~~~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~  400 (429)
T cd00256         331 SPVHKSEKFWRENADR--------LNEKN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQR  400 (429)
T ss_pred             CCCCCCchHHHHHHHH--------HHhcc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHH
Confidence               11 1223444433        22111  135666666663 4466666778888999998875432 222  36677


Q ss_pred             HHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        550 VLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       550 l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      +.++++++|++||..|..|+..+.-
T Consensus       401 vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         401 VMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8888999999999999999998853

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=96.34  E-value=0.25  Score=52.99  Aligned_cols=184  Identities=11%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             hHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhc--ChhhHHHhHHHHHHHhcCC--
Q psy14014        181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL--SQSDVEQLVMPTLRQCSGD--  256 (615)
Q Consensus       181 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~~~d--  256 (615)
                      +..|....+++...+.        ..-+..+.+.+....-.-. .+.+.+..+...+  +...    ++..+..++++  
T Consensus       340 ~~~r~~~~Dal~~~GT--------~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~----~l~~l~~l~~~~~  406 (574)
T smart00638      340 KKARRIFLDAVAQAGT--------PPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEE----ILKALFELAESPE  406 (574)
T ss_pred             HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHH----HHHHHHHHhcCcc
Confidence            5666666666655432        2233444444443332211 1223333333332  2222    44444444443  


Q ss_pred             --CChHHHHHHHHHHHHHHHHhCccch------hhhHHHHHHHhh----cCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014        257 --TSWRVRYMVADKFTDLQKAVGPEIT------KTDLVQAFQMLL----KDSEAEVRAAAANKVRDFCQNLDAYNQENII  324 (615)
Q Consensus       257 --~~~~vR~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  324 (615)
                        ++..+|.++..+++.+......+..      ...+++.+...+    ++.+.+.+..++++|+.+...        ..
T Consensus       407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------~~  478 (574)
T smart00638      407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------SS  478 (574)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------hH
Confidence              4678999999999998875443321      245666665544    345556677888888866541        11


Q ss_pred             HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC--CChhHHHHHHHhhh
Q psy14014        325 MTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNLD  391 (615)
Q Consensus       325 ~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d--~~~~vr~~a~~~l~  391 (615)
                      ...+.|++. .-...+..+|..++.++..++.... .    .+.+.+.+.+.+  ++.+||..|+..+-
T Consensus       479 i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm  541 (574)
T smart00638      479 IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-R----KVQEVLLPIYLNRAEPPEVRMAAVLVLM  541 (574)
T ss_pred             HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-h----HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence            233344433 1224567899999999997765322 2    234455555544  56789999987653

>KOG0392|consensus

Probab=96.31  E-value=0.15  Score=56.20  Aligned_cols=225  Identities=16%  Similarity=0.109  Sum_probs=140.1

Q ss_pred             hchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh----hHHhhhHHHHHHHhhcC-------C--CcchhhhHHhhhhhh
Q psy14014         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASG-------D--WFTSRTSACGLFSVC  156 (615)
Q Consensus        90 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~l~~~-------~--~~~~r~~a~~~l~~~  156 (615)
                      .++..|....-++..++|+.+.-+++.+.+....    ..++..+.-++..++-|       +  -..+|.+++..++.+
T Consensus        77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~  156 (1549)
T KOG0392|consen   77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY  156 (1549)
T ss_pred             HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence            3455566666788999999999999998776554    22333333333333221       1  136899999999999


Q ss_pred             ccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHH
Q psy14014        157 YPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  234 (615)
Q Consensus       157 ~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~  234 (615)
                      ..+..+....+.++.+.+++.-+.|++|..-+..+........+  .......++.+.+.+.|.+..||..|...+..++
T Consensus       157 l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~  236 (1549)
T KOG0392|consen  157 LKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP  236 (1549)
T ss_pred             HHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence            99999988999999999999988999999888777655442211  2334567788888999999999999999988776


Q ss_pred             hhcChh---h---HHHhHHHHHHHhcCCCChH---HHHHHHHHHHHH-HHHhCccch-hhhHHHHHHHhhcCCcHHHHHH
Q psy14014        235 SLLSQS---D---VEQLVMPTLRQCSGDTSWR---VRYMVADKFTDL-QKAVGPEIT-KTDLVQAFQMLLKDSEAEVRAA  303 (615)
Q Consensus       235 ~~~~~~---~---~~~~l~~~l~~~~~d~~~~---vR~~~~~~l~~l-~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~  303 (615)
                      ....+.   .   ....+...+.++ .|-+|.   .|....+.+... ...+..+.. ...+.|-+...+.+.-..+|.+
T Consensus       237 s~~v~l~~~~i~~lv~~l~~~l~~l-ddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a  315 (1549)
T KOG0392|consen  237 SIQVKLMVQKIAKLVHTLWSFLLEL-DDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRA  315 (1549)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence            665321   1   111122222222 234432   222222221111 000011101 1245555555666666778888


Q ss_pred             HHHHHHHHHhhc
Q psy14014        304 AANKVRDFCQNL  315 (615)
Q Consensus       304 a~~~l~~~~~~~  315 (615)
                      ++..+..+.+.-
T Consensus       316 ~l~~l~~lle~~  327 (1549)
T KOG0392|consen  316 ALETLAMLLEAD  327 (1549)
T ss_pred             HHHHHHHHHhcC
Confidence            888888777643

>KOG1822|consensus

Probab=96.31  E-value=3.3  Score=48.44  Aligned_cols=121  Identities=12%  Similarity=0.089  Sum_probs=84.9

Q ss_pred             hhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHhhccc
Q psy14014        239 QSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE-AEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       239 ~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~  317 (615)
                      ++.+...-...+...+..+++..|..+.++++.++...+.......+...+.+-+.+.. +-.|..-.-+++.+-++.+.
T Consensus       870 ~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs  949 (2067)
T KOG1822|consen  870 PEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGS  949 (2067)
T ss_pred             HHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence            34444445555666777889999999999999999999887766677777776666654 55566667777777776554


Q ss_pred             cchhHHHHHhhHHHHHHhhCCCCH-HHHHHHHHHHHhhchhhcc
Q psy14014        318 YNQENIIMTYILPYVKDLVADPNQ-HVKSALASVIMGLSPILGK  360 (615)
Q Consensus       318 ~~~~~~~~~~l~p~l~~~~~d~~~-~vR~~~~~~l~~l~~~~g~  360 (615)
                      .... .....-+..+..+.+|+.. .|+...+.++..+....|+
T Consensus       950 ~~s~-qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p  992 (2067)
T KOG1822|consen  950 IGSG-QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGP  992 (2067)
T ss_pred             CCCc-hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence            3322 2334444566677777665 9999999988888776665

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.30  E-value=0.053  Score=41.27  Aligned_cols=79  Identities=22%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhc-hhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL  250 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  250 (615)
                      .+..+.|+.+.||..++..|..+.+.-. .....+.++.++.+.++|+++-|--.|++++..++...+..     ++|.+
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----vl~~L   82 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----VLPIL   82 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----HHHHH
Confidence            4555688888899998888888887665 44456788888889999999999999999999988876653     45555


Q ss_pred             HHhcC
Q psy14014        251 RQCSG  255 (615)
Q Consensus       251 ~~~~~  255 (615)
                      .+...
T Consensus        83 ~~~y~   87 (92)
T PF10363_consen   83 LDEYA   87 (92)
T ss_pred             HHHHh
Confidence            44333

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.25  E-value=0.98  Score=44.81  Aligned_cols=175  Identities=17%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             ChHHHHHHHHhHHHHHHHh-chhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCC
Q psy14014        180 TPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTS  258 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~  258 (615)
                      ...-|.+|.+.+..+...- +.......+...+....+++++..|..|++++.+++-.-|.-.....-+..+.+.+-|+.
T Consensus        81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~  160 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGS  160 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhcc
Confidence            3445556666555555441 111223344455555555666666666666666655444332222223344444444433


Q ss_pred             hHHHHHHHHHHHHHHHH------hCccchhhhHHHHHHHh----hcCCcH-HHHHHHHHHHHHHHhhccccchhHHHHHh
Q psy14014        259 WRVRYMVADKFTDLQKA------VGPEITKTDLVQAFQML----LKDSEA-EVRAAAANKVRDFCQNLDAYNQENIIMTY  327 (615)
Q Consensus       259 ~~vR~~~~~~l~~l~~~------~~~~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  327 (615)
                      ...-..++.++-.+...      +......+.++..+.+.    .++... +.-+++..++..+.+..+.-..-....-.
T Consensus       161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~  240 (371)
T PF14664_consen  161 FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR  240 (371)
T ss_pred             HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence            33333333333332211      11112223344444443    222221 34556677777777655432100000001


Q ss_pred             hHHHHHHhhCCCCHHHHHHHHHHHHhh
Q psy14014        328 ILPYVKDLVADPNQHVKSALASVIMGL  354 (615)
Q Consensus       328 l~p~l~~~~~d~~~~vR~~~~~~l~~l  354 (615)
                      .+..+...+.-+++.+|..+...+-.+
T Consensus       241 ~lksLv~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  241 GLKSLVDSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            233344445556666666655554444

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.24  E-value=0.067  Score=40.69  Aligned_cols=69  Identities=19%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhC-hhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACG-PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE  577 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~  577 (615)
                      ...+..+.|+.+.+|..++..+..+.+..+ .....+.++..+...++|+|+-|-.+|+++|..++...+
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            334455677778888888888888877665 333356677777778888888888888888888876654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.11  E-value=1.1  Score=41.29  Aligned_cols=194  Identities=15%  Similarity=0.110  Sum_probs=109.7

Q ss_pred             HhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH--
Q psy14014        175 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ--  252 (615)
Q Consensus       175 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--  252 (615)
                      +.+..++++....++.+..++.+-.  ...+.++..+..+.+.+....+..+...+..+-+.-+.  ..+.+-+.+..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence            4556667777777777777665431  22344555555555555555555555555544332221  12333333322  


Q ss_pred             -------hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014        253 -------CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL-KDSEAEVRAAAANKVRDFCQNLDAYNQENII  324 (615)
Q Consensus       253 -------~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  324 (615)
                             .-.+..|....+.+.++..++...+.  ...++++.+...+ ++.++.++..++.++..++..-.-+..  ..
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~--s~  160 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY--SA  160 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH--HH
Confidence                   12345688888888888888887665  3568889999999 788889999999999999864222211  11


Q ss_pred             HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc-c---hhhhhhhHHHHHHhhcCCC
Q psy14014        325 MTYILPYVKDLVADPNQHVKSALASVIMGLSPILG-K---HNTVDHLLPLFLSQLKDEC  379 (615)
Q Consensus       325 ~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g-~---~~~~~~l~p~l~~~l~d~~  379 (615)
                      +..+.|.   +-.+..+.+-+..++.+.-+...-- .   +.+...++..+.+.....+
T Consensus       161 w~vl~~~---l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  161 WKVLQKK---LSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHh---cCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            2223332   2345556665555555444332211 1   2234456666666666544

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.08  E-value=2.1  Score=44.23  Aligned_cols=276  Identities=11%  Similarity=0.043  Sum_probs=149.7

Q ss_pred             HHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCC--cchhhhchHHHhhhhcCc
Q psy14014         27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVE  102 (615)
Q Consensus        27 ~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~  102 (615)
                      ...|..+++.|......+..+ ..+++.-....+++.+.  +.|+++.+.|..+++.-..  ......++..+..--.++
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~-~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~   82 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLS-SIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD   82 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCch-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence            568999999999998877664 45556666677777654  5999999999888764322  111122333333333344


Q ss_pred             hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCC---------------cchh---------hhHHhhhhhh--
Q psy14014        103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDW---------------FTSR---------TSACGLFSVC--  156 (615)
Q Consensus       103 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~---------------~~~r---------~~a~~~l~~~--  156 (615)
                      +-..|..|+.+|.+=++.+.  .++..+.|.+......-.               ...+         .....++..+  
T Consensus        83 d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n  160 (464)
T PF11864_consen   83 DFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN  160 (464)
T ss_pred             hHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence            45677777777766555552  244444444443321100               0000         0011122211  


Q ss_pred             -----ccCCChhhHHHHHHHHHHHhCC-CChHHHHHHHHhHHHHHHH--hchhhhHhhhHHHHHHhhccCchhHHHHHHH
Q psy14014        157 -----YPRVTAGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVE  228 (615)
Q Consensus       157 -----~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~--~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~  228 (615)
                           ...+.+.....++..+..+|.. .+...=+.++..+..+..+  +|.+ ....++..+....+-  ......+-+
T Consensus       161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~-sl~~~i~vLCsi~~~--~~l~~~~w~  237 (464)
T PF11864_consen  161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSE-SLSPCIEVLCSIVNS--VSLCKPSWR  237 (464)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChH-HHHHHHHHHhhHhcc--cccchhHHH
Confidence                 2334556666677766666643 3333336778888877663  3322 223344444333222  255556666


Q ss_pred             HHHHHHhhcChhhHHHhHHHHHHHhc--CC----CChHHHHHHHHHHHHHHHHhCccch----hh--hHHHHHHHhhcCC
Q psy14014        229 ACVSIASLLSQSDVEQLVMPTLRQCS--GD----TSWRVRYMVADKFTDLQKAVGPEIT----KT--DLVQAFQMLLKDS  296 (615)
Q Consensus       229 ~l~~l~~~~~~~~~~~~l~~~l~~~~--~d----~~~~vR~~~~~~l~~l~~~~~~~~~----~~--~l~~~l~~~l~d~  296 (615)
                      ++..++..-..    ...+..+...+  .|    .+..+-++++..++.+....+.+..    ..  -++|.|...++..
T Consensus       238 ~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~  313 (464)
T PF11864_consen  238 TMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN  313 (464)
T ss_pred             HHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC
Confidence            66666532211    22344455555  22    3456667888888887776643321    22  3888898888877


Q ss_pred             cHHHHHHHHHHHHHHH
Q psy14014        297 EAEVRAAAANKVRDFC  312 (615)
Q Consensus       297 ~~~vr~~a~~~l~~~~  312 (615)
                      ++.|-...+..+..+.
T Consensus       314 ~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  314 SPRVDYEILLLINRLL  329 (464)
T ss_pred             CCeehHHHHHHHHHHH
Confidence            6655545555555544

>KOG0891|consensus

Probab=95.97  E-value=6  Score=48.47  Aligned_cols=510  Identities=18%  Similarity=0.146  Sum_probs=232.2

Q ss_pred             CcHHHHHHHHHHhccccCCCCC--------cchhhhchHHHhhh-hcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHH
Q psy14014         63 DEDEVLLALAEQLGTFTPNVGG--------PEYVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL  133 (615)
Q Consensus        63 ~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  133 (615)
                      +++++|..+...+-.+..+...        .++...++..+..+ ..|.++.+|......+.   +...+....+..+..
T Consensus       493 ~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr~  569 (2341)
T KOG0891|consen  493 DDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLRL  569 (2341)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHHH
Confidence            3446888775444443332111        11233333333332 45677777776665554   222222222334444


Q ss_pred             HHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHH----hCCCChHHHHHHHHhHHHHHHHhc--hhhhHhhh
Q psy14014        134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL----CQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDI  207 (615)
Q Consensus       134 l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l----~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l  207 (615)
                      .....++....++..+...++.++..-+....+.+....+..    ..+....+...++.-+........  -..+...+
T Consensus       570 ~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~  649 (2341)
T KOG0891|consen  570 LFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPI  649 (2341)
T ss_pred             HHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCch
Confidence            455556666777777777777665544333333333222222    223333333333333333322211  12234556


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh--HHHhHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhCc----cc
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSGDTS-WRVRYMVADKFTDLQKAVGP----EI  280 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~----~~  280 (615)
                      +-.+...+.|.+..+-+.+..+++.++...+.+.  ....+++.+.+.+.|.+ ..-|.++.++++.+...-+-    ..
T Consensus       650 l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~  729 (2341)
T KOG0891|consen  650 LLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYL  729 (2341)
T ss_pred             HHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccc
Confidence            6666777788888888999999999998888432  22345666655555543 45677788888888765432    22


Q ss_pred             hhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCH--HH---HHHH-------
Q psy14014        281 TKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQ--HV---KSAL-------  347 (615)
Q Consensus       281 ~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~--~v---R~~~-------  347 (615)
                      ..+.++..+...++. ....+|.++++.++..... .+..........   .+........+  ..   ....       
T Consensus       730 ~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~-d~~~~~~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~~~e~  805 (2341)
T KOG0891|consen  730 DYPELLDILINILKTEQSSTIRREAIRLLGLLGAL-DPYKHKVTEGTS---ASKISSEQIKSDIDISLLESGVNPSNDEY  805 (2341)
T ss_pred             cChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc-chhHHHHHhhhh---hHhhhhccccccchHHHHHhhhhhhhhhh
Confidence            234566655554443 3456788888777744332 221110000000   00000010011  00   0000       


Q ss_pred             --HHHHHhhchhhcchhhhhh-------hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhc
Q psy14014        348 --ASVIMGLSPILGKHNTVDH-------LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQ  418 (615)
Q Consensus       348 --~~~l~~l~~~~g~~~~~~~-------l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~  418 (615)
                        ...+..+...........+       .+|.+.. +..+...-+..++..+.......+..   ......+-...+...
T Consensus       806 ~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~-~~~~~~l~l~qv~~~~~~~~r~~~~~---~~~f~~~q~~~~~~~  881 (2341)
T KOG0891|consen  806 YPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQS-LGLKCVLFLDQVIPTLIDVMRSCPPN---LREFYFQQLTSLVAI  881 (2341)
T ss_pred             hhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHh-hccchhhhHHHHHHHHHHHHHhcCcc---hhHHHHHhhhhhhhc
Confidence              0001111000000000001       1111111 11111222222222222111111100   000000000000000


Q ss_pred             cccchhhhhhhhHHHHHhhhcCCc---hHHHHHHHHhHHHHhhhChHhH--HHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q psy14014        419 LGVEFFDEKLNALSIVELAEDSKW---RVRLAIIEYMPLLAGQLGVEFF--DEKLNALCMTWLVDHVYAIREAATLNLKK  493 (615)
Q Consensus       419 ~~~~~~~~~l~~~~i~~~~~~~~~---~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vR~~a~~~l~~  493 (615)
                      .... ... +. +.+.....+.+|   .+.......+..+...++.++.  .+...+..+..+.......|.........
T Consensus       882 ~~~h-~~~-~~-~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~  958 (2341)
T KOG0891|consen  882 VRQH-IRP-YM-ESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQS  958 (2341)
T ss_pred             cchh-Hhh-hh-hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHH
Confidence            0000 000 00 122223332222   2223334445555555555432  22233322222222222233333333333


Q ss_pred             HHHHhCh--HHhhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHH
Q psy14014        494 LVEQFGS--EWAQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL  569 (615)
Q Consensus       494 l~~~~~~--~~~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l  569 (615)
                      +.. +|.  +....-+.|.+.+++.+.  ....|..+..+.+.++...........+...+.+.+.-. ++++...+..+
T Consensus       959 ~~~-~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l 1036 (2341)
T KOG0891|consen  959 LQK-FGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTL 1036 (2341)
T ss_pred             HHh-cCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHH
Confidence            322 232  223345778888888887  677899999999999988777666666666667766666 99999999999


Q ss_pred             HHHhHhhhhhhHHhhHHHHHh
Q psy14014        570 QKIGPILETNVIQSQVKPALD  590 (615)
Q Consensus       570 ~~l~~~~~~~~~~~~~~~~l~  590 (615)
                      ..+....+...  ..+.|++.
T Consensus      1037 ~~l~~~~~~~~--~i~~p~~~ 1055 (2341)
T KOG0891|consen 1037 IALVKQLGKDF--AIFIPMVN 1055 (2341)
T ss_pred             HHHHHhhcCce--eehHHHHH
Confidence            99887766432  34566655

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.95  E-value=0.13  Score=44.74  Aligned_cols=60  Identities=13%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             CCCCCchHHHHHHHHHHHHhHhhh----hhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        554 AGDNVANVRFNVAKTLQKIGPILE----TNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       554 ~~D~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ..+.+..+-....++++.+++..+    +..+...+..-+..+..+.|.+|+-.+..+++.+.+
T Consensus       111 ~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  111 QAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             hcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            356677777788888888886654    233444455555556677999999999888887654

>KOG2213|consensus

Probab=95.91  E-value=1.8  Score=41.82  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN  314 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  314 (615)
                      .-++-+.+.++++..+++.-  .+..+..-.+++.|.+..||..|++.|+.||+.
T Consensus        39 k~k~lasq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~   91 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG   91 (460)
T ss_pred             HHHHHHHHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence            45667777777777776643  356777778888888889999999999888874

>KOG2160|consensus

Probab=95.90  E-value=0.53  Score=44.96  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=105.7

Q ss_pred             CCchHHHHHHHHhHHHHhhhCh--HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH--H-hhhchhHHHHhh
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE--W-AQSTVIPKVVAM  514 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~i~~~l~~~  514 (615)
                      .+..-|..+++.+..+++.+..  ++..-..++.+...+++++..+|+.|+..++..+.+-...  . .....++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            3455677788888888776643  2222334455666999999999999999999999864321  1 112366777775


Q ss_pred             hc-CCCchHHHHHHHHHHHHHhhhChh--hH-HHhhHHHHHhhCCC--CCchHHHHHHHHHHHHhHhhhh--hhH-HhhH
Q psy14014        515 SR-DQNYLHRMTCLFCINVLAEACGPT--VT-ANFLLPTVLNMAGD--NVANVRFNVAKTLQKIGPILET--NVI-QSQV  585 (615)
Q Consensus       515 ~~-d~~~~~R~~a~~~l~~l~~~~~~~--~~-~~~i~~~l~~~~~D--~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~~  585 (615)
                      +. +.+-.+|..++.+++.+.....+.  .| .-.-...|...+++  .+...+..+...+..+.+....  +.. ...+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            54 455667899999999999875543  22 22234555666666  4455555667777777654321  111 1223


Q ss_pred             HHHHhhhcCCCCccHHHHHHHHH
Q psy14014        586 KPALDKLNGDTDVDVKYFAQEAI  608 (615)
Q Consensus       586 ~~~l~~l~~d~d~~v~~~a~~a~  608 (615)
                      ...+..+....+.+++++|..++
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~  277 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTAL  277 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHH
Confidence            33444455556777777777654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.79  E-value=0.092  Score=45.03  Aligned_cols=141  Identities=16%  Similarity=0.141  Sum_probs=80.7

Q ss_pred             HHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh-----cCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        243 EQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL-----KDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       243 ~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-----~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      .+.+++.+.++++ +.+|.+|+.+++++|.++..=+      ..........     .+.+........     ......
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP------~~~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~   76 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDP------YKHKSIQKSLDSKSSENSNDESTDISL-----PMMGIS   76 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc------HHHhcccccCCccccccccccchhhHH-----hhccCC
Confidence            4567777777664 3468888888888888764210      0000000000     011111111111     111111


Q ss_pred             ccchhHHHHHhhHHHHHHhhCCCCHHH-HHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        317 AYNQENIIMTYILPYVKDLVADPNQHV-KSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~~d~~~~v-R~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                      + ..++.+....+..+...++|++-.. +.+++.++..+.+..|.  -.+.++++|.+...++..++..|+..+..|+.+
T Consensus        77 ~-~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   77 P-SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             C-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1 1223455566777777888876533 44577777777766664  446778999999999977778888888777766


Q ss_pred             hh
Q psy14014        394 NE  395 (615)
Q Consensus       394 ~~  395 (615)
                      +.
T Consensus       156 v~  157 (160)
T PF11865_consen  156 VS  157 (160)
T ss_pred             HH
Confidence            54

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.73  E-value=0.66  Score=47.99  Aligned_cols=142  Identities=18%  Similarity=0.100  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhh-cCCCchHHHHHHHHHHHHHhhhCh
Q psy14014        465 DEKLNALCMTWLVD----HVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS-RDQNYLHRMTCLFCINVLAEACGP  539 (615)
Q Consensus       465 ~~~l~~~l~~~l~d----~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~~R~~a~~~l~~l~~~~~~  539 (615)
                      ...+-|.+......    .+..+..+|.-++..+-.. +.+ +...-+|.+...+ +.++|.+|.+++-++|.+.-++. 
T Consensus       890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMCl-S~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN-  966 (1128)
T COG5098         890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCL-SFE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN-  966 (1128)
T ss_pred             HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHH-hHH-HHHHHHHHHHHHHhhCCCcceeccceeeccccceehh-
Confidence            34455655555443    5778888888888877542 333 3344678888754 58999999999999999875443 


Q ss_pred             hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        540 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       540 ~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                       .+.+.....|.+.+.|.+..||.++..++..++-.- .-....+ .+.+..++.|+|..+...|.--+-.+|
T Consensus       967 -~~~de~t~yLyrrL~De~~~V~rtclmti~fLilag-q~KVKGq-lg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         967 -TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAG-QLKVKGQ-LGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             -hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-ceeeccc-hhhhHhhccCCcchHHHHHHHHHHHHH
Confidence             244567788889999999999999999998876321 1111112 344555669999999999987776655

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.72  E-value=0.24  Score=42.88  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=70.4

Q ss_pred             hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhh---chh
Q psy14014        281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL---SPI  357 (615)
Q Consensus       281 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l---~~~  357 (615)
                      ..+..+|.+.+.+.+.+..-|--|.+.+..++.. ....+--.+++++++.+...++..++.|...++.+|..+   ...
T Consensus        35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~  113 (183)
T PF10274_consen   35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM  113 (183)
T ss_pred             chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence            3468999999999988878888888898888887 222222345777888888899999999999999999999   666


Q ss_pred             hcch--hhhhhhHHHHHHh
Q psy14014        358 LGKH--NTVDHLLPLFLSQ  374 (615)
Q Consensus       358 ~g~~--~~~~~l~p~l~~~  374 (615)
                      +|..  .+..+++|.+.-+
T Consensus       114 vG~aLvPyyrqLLp~ln~f  132 (183)
T PF10274_consen  114 VGEALVPYYRQLLPVLNLF  132 (183)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            7753  2345666666533

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.71  E-value=1.7  Score=43.16  Aligned_cols=226  Identities=12%  Similarity=0.069  Sum_probs=132.4

Q ss_pred             hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-hHHhhhHHHHH--HHhhcCC-CcchhhhHHhhhhhhccC--CC
Q psy14014         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDLEAHFVPLV--QRLASGD-WFTSRTSACGLFSVCYPR--VT  161 (615)
Q Consensus        88 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l--~~l~~~~-~~~~r~~a~~~l~~~~~~--~~  161 (615)
                      +..+.+.+..++-+++.+||.++..+++.+...-.. ..+...=++.+  ..+..+. ....|..|.+++..+...  -.
T Consensus        23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            334444444433344499999999988887654322 11122112222  2344443 445788999999888766  33


Q ss_pred             hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh--
Q psy14014        162 AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--  239 (615)
Q Consensus       162 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--  239 (615)
                      ......+...+..+.++++...|..|.+.+.+++-.-+.-.....-+..+...+.|+..++-...+.++-.+...-..  
T Consensus       103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence            455667888888999999999999999999999876665444556667777777776555555555554444332211  


Q ss_pred             ----hhHHHhHHHHHHHh----cCCCCh-HHHHHHHHHHHHHHHHhCccc----hhhhHHHHHHHhhcCCcHHHHHHHHH
Q psy14014        240 ----SDVEQLVMPTLRQC----SGDTSW-RVRYMVADKFTDLQKAVGPEI----TKTDLVQAFQMLLKDSEAEVRAAAAN  306 (615)
Q Consensus       240 ----~~~~~~l~~~l~~~----~~d~~~-~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~  306 (615)
                          ......++-.+.+.    .++... ..-.++..++..+.+.+..-.    .....+..++..+.-+.+++|...+.
T Consensus       183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild  262 (371)
T PF14664_consen  183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD  262 (371)
T ss_pred             hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence                11122233333333    222221 233344455555554432211    01145666778888888889987777


Q ss_pred             HHHHHHh
Q psy14014        307 KVRDFCQ  313 (615)
Q Consensus       307 ~l~~~~~  313 (615)
                      .+-.+..
T Consensus       263 ll~dllr  269 (371)
T PF14664_consen  263 LLFDLLR  269 (371)
T ss_pred             HHHHHHC
Confidence            7666554

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.69  E-value=0.086  Score=45.21  Aligned_cols=72  Identities=11%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             hhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014        283 TDLVQAFQMLLKDSE-AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~  356 (615)
                      .-.+..+.+.++|+. ..-+..+++++..+.+..+..+  -.++++++|.+...++..+...|......++.+..
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c--v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC--VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc--hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345566777777765 3345567777777776655544  25788999999998887777888888777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2160|consensus

Probab=95.65  E-value=1.6  Score=41.85  Aligned_cols=143  Identities=16%  Similarity=0.142  Sum_probs=91.3

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchh---hhHhhhHHHHHHhh-ccCchhHHHHHHHHHHHHHhhcChhh--HHH-h
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQSD--VEQ-L  245 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~-~  245 (615)
                      ..++++.+..+|..|+..++..++.-++-   ......++.+...+ .|....+|..|+.++..+.+...+-.  +.. .
T Consensus       130 l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~  209 (342)
T KOG2160|consen  130 LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN  209 (342)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence            33778999999999999999998876652   22233454444444 56777899999999999988876531  111 1


Q ss_pred             HHHHHHHhcCC--CChHHHHHHHHHHHHHHHHhCcc--chhhhHHH-HHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014        246 VMPTLRQCSGD--TSWRVRYMVADKFTDLQKAVGPE--ITKTDLVQ-AFQMLLKDSEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       246 l~~~l~~~~~d--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~~~~~~  315 (615)
                      -...+...+++  .+.+.++.++..++.+...-..+  .......+ .+..+....+.++++.++.++-.....+
T Consensus       210 G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  210 GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            24455566665  56778888888888776543221  11122222 3344555566778888877776665544

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.61  E-value=0.27  Score=42.53  Aligned_cols=69  Identities=16%  Similarity=0.058  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh---hchhHHHHhhhcCCCchHHHHHHHHHHHH
Q psy14014        465 DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ---STVIPKVVAMSRDQNYLHRMTCLFCINVL  533 (615)
Q Consensus       465 ~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~~R~~a~~~l~~l  533 (615)
                      .+.++|.+++.+......-|-.|...+..+...-+.+...   ..+++.+.+.++.+++.+...++.++..+
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L  107 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL  107 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            4567777777777777777777777777777763322221   33444555667777777777777777777

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2021|consensus

Probab=95.55  E-value=3.9  Score=43.16  Aligned_cols=239  Identities=15%  Similarity=0.117  Sum_probs=123.8

Q ss_pred             CCCCHHHHHHHHHHHHhhchhhcchh------------hhhhhHHHHHH--hhcCCChhHHHHHHHhhhHhhhhhchhHH
Q psy14014        337 ADPNQHVKSALASVIMGLSPILGKHN------------TVDHLLPLFLS--QLKDECPEVRLNIISNLDCVNEVIGIQQW  402 (615)
Q Consensus       337 ~d~~~~vR~~~~~~l~~l~~~~g~~~------------~~~~l~p~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  402 (615)
                      ...+|..-..++..+..+++......            ....+++.+..  ....+++.|..-..+.+.+....+..+. 
T Consensus       450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es-  528 (980)
T KOG2021|consen  450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES-  528 (980)
T ss_pred             CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch-
Confidence            45678888888888888887653221            11133333332  3445667777777777666555543321 


Q ss_pred             HHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCc-
Q psy14014        403 RVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDH-  479 (615)
Q Consensus       403 ~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-  479 (615)
                             +++|.+.+.+            .=...+++.+.+||..+.-.+.++.+.+.+..  +-+.++..+-++|..+ 
T Consensus       529 -------q~ip~vL~aF------------ld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~v  589 (980)
T KOG2021|consen  529 -------QKIPLVLNAF------------LDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKV  589 (980)
T ss_pred             -------hhhHHHHHHH------------ccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence                   1233221100            00134567888899888888888877665532  2234444444444111 


Q ss_pred             ---c--------hHHHHHHHHHHHHHHHH--hChHH---hh----------hchhHHHHhhhcCCCchHHH----HHHHH
Q psy14014        480 ---V--------YAIREAATLNLKKLVEQ--FGSEW---AQ----------STVIPKVVAMSRDQNYLHRM----TCLFC  529 (615)
Q Consensus       480 ---~--------~~vR~~a~~~l~~l~~~--~~~~~---~~----------~~i~~~l~~~~~d~~~~~R~----~a~~~  529 (615)
                         +        .+-...-.+++|.+...  ..++.   +.          ..+.+.-..+..|.+..+..    .++.+
T Consensus       590 tt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lma  669 (980)
T KOG2021|consen  590 TTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMA  669 (980)
T ss_pred             CCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence               1        11111112222322211  01110   00          11222222344566555543    45567


Q ss_pred             HHHHHhhhChhh-----------H---HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCC
Q psy14014        530 INVLAEACGPTV-----------T---ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD  595 (615)
Q Consensus       530 l~~l~~~~~~~~-----------~---~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d  595 (615)
                      +|.+++.....-           |   .+.+++.+..  --...++|.++-..+.+++...+++.+ +.+..+++.+++|
T Consensus       670 ig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~--f~k~E~iRsavrft~hRmI~~lg~~vl-Pfipklie~lL~s  746 (980)
T KOG2021|consen  670 IGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSF--FNKFENIRSAVRFTFHRMIPILGNKVL-PFIPKLIELLLSS  746 (980)
T ss_pred             HHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHhcchhhh-cchHHHHHHHHhc
Confidence            888876532211           1   1233444333  245678999999999999998886553 6677777777666


Q ss_pred             CCc
Q psy14014        596 TDV  598 (615)
Q Consensus       596 ~d~  598 (615)
                      -|.
T Consensus       747 ~d~  749 (980)
T KOG2021|consen  747 TDL  749 (980)
T ss_pred             CCH
Confidence            654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.54  E-value=3.7  Score=42.85  Aligned_cols=146  Identities=18%  Similarity=0.140  Sum_probs=102.3

Q ss_pred             CchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCC
Q psy14014        441 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQN  519 (615)
Q Consensus       441 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~  519 (615)
                      +..+..+|.-.+..+. .+..+++ ..=+|.+...+. ++++.+|..|+..+|.+.--++.  +.+..-..|..-+.|.+
T Consensus       909 d~~lq~aA~l~L~klM-ClS~~fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~--~~de~t~yLyrrL~De~  984 (1128)
T COG5098         909 DEELQVAAYLSLYKLM-CLSFEFC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT--TADEHTHYLYRRLGDED  984 (1128)
T ss_pred             CHHHHHHHHHHHHHHH-HHhHHHH-HHHHHHHHHHHhhCCCcceeccceeeccccceehhh--hhHHHHHHHHHHhcchh
Confidence            3444445544444442 1233333 334566666655 89999999999999999876553  45667888999999999


Q ss_pred             chHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcC
Q psy14014        520 YLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG  594 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~  594 (615)
                      ..||.+++.++..+.-...-.  ...-++.+..++.|+|..+...+-.-+.++...  .+.....+..+...|..
T Consensus       985 ~~V~rtclmti~fLilagq~K--VKGqlg~ma~~L~deda~Isdmar~fft~~a~K--dNt~yn~fidifs~ls~ 1055 (1128)
T COG5098         985 ADVRRTCLMTIHFLILAGQLK--VKGQLGKMALLLTDEDAEISDMARHFFTQIAKK--DNTMYNGFIDIFSTLSS 1055 (1128)
T ss_pred             hHHHHHHHHHHHHHHHcccee--eccchhhhHhhccCCcchHHHHHHHHHHHHHhc--ccchhhhhHHHHHHcCc
Confidence            999999999999886432211  234577888899999999998888888777653  34455667777777753

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.47  E-value=1.7  Score=44.09  Aligned_cols=188  Identities=13%  Similarity=0.209  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhCC-CChHHHHHHHHhHHHHHHHhch---h---hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        167 ELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV---D---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       167 ~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~---~---~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      .+...+...++. .+|.--+..-++++.+.+...+   +   .+.+.++|.+...++.+-.+.--.+.+.+..+.+.-+.
T Consensus        71 ~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~  150 (435)
T PF03378_consen   71 HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPS  150 (435)
T ss_dssp             HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            334444555554 4778888899999999887553   2   35678999999999988778888889999988888772


Q ss_pred             hhH---HHhHHHHHHHhcCCCChHHH---HHHHHHHHHHHHHhCccc----hhhhHHHHHHHhhcCCcHHHHHHHHHHHH
Q psy14014        240 SDV---EQLVMPTLRQCSGDTSWRVR---YMVADKFTDLQKAVGPEI----TKTDLVQAFQMLLKDSEAEVRAAAANKVR  309 (615)
Q Consensus       240 ~~~---~~~l~~~l~~~~~d~~~~vR---~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  309 (615)
                      ...   ...++|.+.   ...-|..|   -++...+..+...-+...    ....++.++.+++..+..+  ..+..-|.
T Consensus       151 ~~~p~~y~~L~~~Ll---~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~  225 (435)
T PF03378_consen  151 SPLPDAYKQLFPPLL---SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLE  225 (435)
T ss_dssp             -S--TTTGGGHHHHT---SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHH
T ss_pred             CCCcHHHHHHHHHHc---CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHH
Confidence            222   223444443   33334322   334444444444333222    2356788888988776544  45888889


Q ss_pred             HHHhhccccchhHHHHHhhHHHHH-HhhCCCCHHHHHHHHHHHHhhchhhcc
Q psy14014        310 DFCQNLDAYNQENIIMTYILPYVK-DLVADPNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~l~p~l~-~~~~d~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      .+..+++.+.... ++..++..+. ++-+.+.++.++.++..++.++-..|.
T Consensus       226 ~iv~~~p~~~l~~-yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~  276 (435)
T PF03378_consen  226 SIVENLPPEALEP-YLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP  276 (435)
T ss_dssp             HHHHHS-HHHHGG-GHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHCCHHHHHH-HHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence            9998887654332 2333444333 333455666666666655555444443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.43  E-value=0.45  Score=46.73  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHhc----------CCcchHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCC--CchHHHHHHH
Q psy14014        463 FFDEKLNALCMTWL----------VDHVYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQ--NYLHRMTCLF  528 (615)
Q Consensus       463 ~~~~~l~~~l~~~l----------~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~~R~~a~~  528 (615)
                      .|...++|.++.++          .+..|.+|+.|+.+++.+++.++..  .....+..++.+.+.|+  ....+..|+.
T Consensus       254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~  333 (343)
T cd08050         254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV  333 (343)
T ss_pred             HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence            34455666666554          3467999999999999999999864  23455666777766655  3344888888


Q ss_pred             HHHHHH
Q psy14014        529 CINVLA  534 (615)
Q Consensus       529 ~l~~l~  534 (615)
                      ++..++
T Consensus       334 GL~~lG  339 (343)
T cd08050         334 GLSALG  339 (343)
T ss_pred             HHHHhC
Confidence            888775

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG0946|consensus

Probab=95.39  E-value=4.5  Score=42.94  Aligned_cols=321  Identities=14%  Similarity=0.154  Sum_probs=169.9

Q ss_pred             CCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC-chhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC
Q psy14014        178 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD  256 (615)
Q Consensus       178 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d  256 (615)
                      ..-.+=|+.|+.+|..+++.+..+.....+-|++..+-.|- +++.-..++.++..+...=..+        .   ..+|
T Consensus        34 sTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~--------~---v~dd  102 (970)
T KOG0946|consen   34 STLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP--------E---VMDD  102 (970)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch--------h---hccc
Confidence            34456699999999999998776665666667766666664 4566666666665543321100        0   0111


Q ss_pred             CChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHH-HHHhhHHHHHHh
Q psy14014        257 TSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI-IMTYILPYVKDL  335 (615)
Q Consensus       257 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~p~l~~~  335 (615)
                      +. .+ .....   .++..+-+   ..+.+..+...+...+-.||..+++-+..+....+.+-+... ..+.-+..+..+
T Consensus       103 s~-qs-dd~g~---~iae~fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen  103 ST-QS-DDLGL---WIAEQFIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             ch-hh-hHHHH---HHHHHHHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence            11 11 11111   12222111   246777788888888889999999999999887776544321 123344556678


Q ss_pred             hCCCCHHHHHHHHHHHHhhchhhcc-hh--hhhhhHHHHHHhhcCC---C-hhHHHHHHHhhhHhhhhhchh--HHHHHH
Q psy14014        336 VADPNQHVKSALASVIMGLSPILGK-HN--TVDHLLPLFLSQLKDE---C-PEVRLNIISNLDCVNEVIGIQ--QWRVRL  406 (615)
Q Consensus       336 ~~d~~~~vR~~~~~~l~~l~~~~g~-~~--~~~~l~p~l~~~l~d~---~-~~vr~~a~~~l~~l~~~~~~~--~~~~~~  406 (615)
                      +.|...-+|-.++-.|..+...-+. +.  ..+.....+...+..+   + .-|...++..+..+.+...+.  -++.. 
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~-  253 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG-  253 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc-
Confidence            8899999999888888877654332 11  1233444455555432   1 235666666665554432111  11111 


Q ss_pred             HHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC---CchHHHH--HHHHhHHHHhhhCh------------HhHHHHHH
Q psy14014        407 AIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS---KWRVRLA--IIEYMPLLAGQLGV------------EFFDEKLN  469 (615)
Q Consensus       407 ~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~---~~~vr~~--~~~~l~~l~~~~~~------------~~~~~~l~  469 (615)
                         .++|.+..-+....             ..|.   .|.-...  ...++..+.....+            ......++
T Consensus       254 ---~~i~rL~klL~~f~-------------~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll  317 (970)
T KOG0946|consen  254 ---SYIPRLLKLLSVFE-------------FGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLL  317 (970)
T ss_pred             ---ccHHHHHhhcCccc-------------ccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchH
Confidence               13443332221110             1121   3443221  11222222111111            11223445


Q ss_pred             HHHHHhcCCc--chHHHHHHHHHHHHHHHHhCh--HHhhh-----------chhHHHHhhhcC-CCchHHHHHHHHHHHH
Q psy14014        470 ALCMTWLVDH--VYAIREAATLNLKKLVEQFGS--EWAQS-----------TVIPKVVAMSRD-QNYLHRMTCLFCINVL  533 (615)
Q Consensus       470 ~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~--~~~~~-----------~i~~~l~~~~~d-~~~~~R~~a~~~l~~l  533 (615)
                      ..+...+-++  ...|+..+.-+++.+++....  +.+.+           .++-.+..+.+. ..+..|.++.+|+...
T Consensus       318 ~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~  397 (970)
T KOG0946|consen  318 DVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSY  397 (970)
T ss_pred             HHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            5555544444  567899999888888775321  11111           122223334444 4667899999999887


Q ss_pred             H
Q psy14014        534 A  534 (615)
Q Consensus       534 ~  534 (615)
                      .
T Consensus       398 l  398 (970)
T KOG0946|consen  398 L  398 (970)
T ss_pred             H
Confidence            5

>KOG2011|consensus

Probab=95.27  E-value=3.6  Score=45.70  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             HhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh---hcc-hhhhhh
Q psy14014        291 MLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI---LGK-HNTVDH  366 (615)
Q Consensus       291 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~---~g~-~~~~~~  366 (615)
                      ...+|-.+++|..++..|+..+...|.-    .+....+.|+-..+.|.+-.||..++++|..+.+.   .+. +.+...
T Consensus       294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~----Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsR  369 (1048)
T KOG2011|consen  294 HRYRDVDPDIRAICIQELGIWIKSYPEI----FLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSR  369 (1048)
T ss_pred             eecccCchHHHHHHHHHHHHHHHhccHH----HhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            3447899999999999999999987754    23456778888999999999999999999887654   111 333444


Q ss_pred             hHHHHHHhh-cCCChhHHHHHHHhh
Q psy14014        367 LLPLFLSQL-KDECPEVRLNIISNL  390 (615)
Q Consensus       367 l~p~l~~~l-~d~~~~vr~~a~~~l  390 (615)
                      +-.-++++. .|.+..||...+..+
T Consensus       370 FK~RIVeMadrd~~~~Vrav~L~~~  394 (1048)
T KOG2011|consen  370 FKDRIVEMADRDRNVSVRAVGLVLC  394 (1048)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHH
Confidence            444555555 455667776655543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.22  E-value=0.65  Score=40.17  Aligned_cols=126  Identities=17%  Similarity=0.082  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh---hchhHHHHhhhcCC-CchHHHHHHHHHHHHHhhhCh-
Q psy14014        465 DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ---STVIPKVVAMSRDQ-NYLHRMTCLFCINVLAEACGP-  539 (615)
Q Consensus       465 ~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~-~~~~R~~a~~~l~~l~~~~~~-  539 (615)
                      .+.+...+.+++++++..-|..++..++.+++..+.+.+.   ...+..++..++.+ .+.++..++.++..+...... 
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3567777889999999999999999999999998776553   33666777777665 456788999999999876432 


Q ss_pred             hhH--------HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhh
Q psy14014        540 TVT--------ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKL  592 (615)
Q Consensus       540 ~~~--------~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l  592 (615)
                      ..+        .+.+.+.+.++.++  ..+...+..+|..++..+++.  .+...+..++..+
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l  163 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL  163 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence            111        12344455555555  677788999999999877642  3445555555443

>KOG2011|consensus

Probab=95.08  E-value=5.7  Score=44.18  Aligned_cols=128  Identities=20%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh---C-hHHhhhchhHHHH
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF---G-SEWAQSTVIPKVV  512 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~---~-~~~~~~~i~~~l~  512 (615)
                      .+|-.+.+|...++.|+...+.++..|+.+..+.++-..|.|.+..||...+.++..+...-   + -+.+.+.+-.+++
T Consensus       296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV  375 (1048)
T KOG2011|consen  296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV  375 (1048)
T ss_pred             cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            46888889999999999999999998888888888777899999999999999999998762   1 1234456677777


Q ss_pred             hhh-cCCCchHHHHHHHHHHHHHhh--hChhhHHHhhHHHHHhhCCCCCchHHHHHHHHH
Q psy14014        513 AMS-RDQNYLHRMTCLFCINVLAEA--CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL  569 (615)
Q Consensus       513 ~~~-~d~~~~~R~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l  569 (615)
                      .+. .|.+..||...+..+......  +..+.    + -.+..++-|.++.++..+..-+
T Consensus       376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d~d----i-~~Vy~Li~d~~r~~~~aa~~fl  430 (1048)
T KOG2011|consen  376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSDKD----I-LIVYSLIYDSNRRVAVAAGEFL  430 (1048)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHhcccccChhH----H-HHHHHHHhccCcchHHHHHHHH
Confidence            777 666788888777655544321  22222    2 3356667788888888776655

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=95.05  E-value=0.077  Score=40.50  Aligned_cols=69  Identities=19%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChhhHHHhhHHHH
Q psy14014        478 DHVYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPTVTANFLLPTV  550 (615)
Q Consensus       478 d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l  550 (615)
                      ++.|.+|+.|+..++.+++.++..  .....+..++.+.+.|+  +...+..|+.++..++    ++.+...++|.+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~l   89 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPNL   89 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccCc
Confidence            567899999999999999988753  24456777777777765  5567888888888874    444444555544

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG0889|consensus

Probab=95.02  E-value=4.1  Score=50.69  Aligned_cols=300  Identities=20%  Similarity=0.220  Sum_probs=158.4

Q ss_pred             hhHHHHHHhhccCchhHHHHHHHHHHHHHhh----cCh------hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014        206 DIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQ------SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA  275 (615)
Q Consensus       206 ~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~----~~~------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~  275 (615)
                      -+++.+.+.+..++.+++.....++..+-..    ++.      -...+.+++-+..++.|+.|.-|.+.+..++.+...
T Consensus       984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen  984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence            4778888888889999999988887765443    221      134556788888899999999999998888877766


Q ss_pred             hCccch---hhhHHHHHHHhhcCCcHHHHH----HHHHHHHHHHhh----ccccchhHHHHHhhHHHHHHhhCCCCHHHH
Q psy14014        276 VGPEIT---KTDLVQAFQMLLKDSEAEVRA----AAANKVRDFCQN----LDAYNQENIIMTYILPYVKDLVADPNQHVK  344 (615)
Q Consensus       276 ~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~~~~~----~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR  344 (615)
                      +.....   ...++..+...++|...++-.    .+-..+..+...    ...+.........++-.+..-+.+++..||
T Consensus      1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred             chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            552211   123445555566665544333    222222222221    111111112334444555556778889999


Q ss_pred             HHHHHHHHhhchhhcchhhhhhhH---------HHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHH--HHH-HHHhhh
Q psy14014        345 SALASVIMGLSPILGKHNTVDHLL---------PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWR--VRL-AIIEYM  412 (615)
Q Consensus       345 ~~~~~~l~~l~~~~g~~~~~~~l~---------p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~-~i~~~l  412 (615)
                      ..+...|..+.+..|.+.  .+++         |.+.+-+..-.-.++.+.+.+..-+.. .++.-+.  ..+ .+..++
T Consensus      1144 ~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~-l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS-LGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred             HHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH-cCCcccCchHHHHHHHHHH
Confidence            999999999988876532  1222         222222232233344444333322211 1111000  000 000001


Q ss_pred             hhhhhccccchhhhhhhhHHHHHhhhc----CCchHHHHHHHHhHHHHhhhC-----hHhHHHHHHHHHHHhcCCcchHH
Q psy14014        413 PLLAGQLGVEFFDEKLNALSIVELAED----SKWRVRLAIIEYMPLLAGQLG-----VEFFDEKLNALCMTWLVDHVYAI  483 (615)
Q Consensus       413 ~~l~~~~~~~~~~~~l~~~~i~~~~~~----~~~~vr~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~v  483 (615)
                      ..++.....+-+       .+.+....    ...+.|....+.+........     ...+...++..+++.+..+..++
T Consensus      1221 ~~La~~~~~~~~-------~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei 1293 (3550)
T KOG0889|consen 1221 IALADAEEDELA-------TIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSEL 1293 (3550)
T ss_pred             HHhhhhhhhhhh-------hhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHH
Confidence            111100000000       01111111    123356667776665543221     12245778888888888888888


Q ss_pred             HHHHHHHHHHHHHH---hChHHhhhchhHHHHhhh
Q psy14014        484 REAATLNLKKLVEQ---FGSEWAQSTVIPKVVAMS  515 (615)
Q Consensus       484 R~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~~  515 (615)
                      -+.+..++..+...   ++.+..+....|.+.++.
T Consensus      1294 ~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1294 IEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred             HHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhh
Confidence            88888888777654   344444444445555543

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=95.01  E-value=0.92  Score=41.34  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             HHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCC-CChHHHHHHHH-hHHHHHHHhchhhhHhhhHH
Q psy14014        132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD-DTPMVRRAAAG-KLGELAKVVEVDYLKTDIIP  209 (615)
Q Consensus       132 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~-~l~~l~~~~~~~~~~~~ll~  209 (615)
                      .++..+-.++..+.|..|+.++.......++    ...+.+...+.+ .+|.+-...|. .++.+...      .+...+
T Consensus        54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~~~~~~  123 (213)
T PF08713_consen   54 ELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------HPEALE  123 (213)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------HGGHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------hHHHHH
Confidence            3444445555555666666555443322222    233444554444 56666555433 33444321      156788


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014        210 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA  275 (615)
Q Consensus       210 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~  275 (615)
                      .+.+..++++..+|++++..+......    ...+.++..+...+.|++..||.+...+|..++..
T Consensus       124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  124 LLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             HHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            889999999999999987776544433    33456778888888999999999999888887653

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=94.93  E-value=4.6  Score=41.09  Aligned_cols=212  Identities=13%  Similarity=0.079  Sum_probs=113.8

Q ss_pred             cHH-HHHHHHHHhccccCCCCC--cchhhhchHHHhhhhcCc-hhHHHHHHHHHHHHHHhhcCh---h---HHhhhHHHH
Q psy14014         64 EDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSP---H---DLEAHFVPL  133 (615)
Q Consensus        64 ~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~~l~~  133 (615)
                      +++ +.+++.+.+..+-+.+..  ....+.+..++.....++ ++.--+...++++.+.+...+   +   .+++.++|.
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~  121 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP  121 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence            445 888888887766554322  223344455555555554 677888888999888887553   2   467788998


Q ss_pred             HHHhhcCCCcchhhhHHhhhhhhccCCC-hhhHHHHHHHHHHHhCCCChHHHH---HHHHhHHHHHHHhchh----hhHh
Q psy14014        134 VQRLASGDWFTSRTSACGLFSVCYPRVT-AGVKAELRSHFRNLCQDDTPMVRR---AAAGKLGELAKVVEVD----YLKT  205 (615)
Q Consensus       134 l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l~~d~~~~vR~---~a~~~l~~l~~~~~~~----~~~~  205 (615)
                      +......+-.+--.-+..+++.+.+.-. +...+....++..++...-|+-|-   +.+..+.++.+..+..    ....
T Consensus       122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~  201 (435)
T PF03378_consen  122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE  201 (435)
T ss_dssp             HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence            8877766532222223334443332222 222222223333444444454332   2333444444444332    2345


Q ss_pred             hhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh---HHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhC
Q psy14014        206 DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL---VMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVG  277 (615)
Q Consensus       206 ~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~  277 (615)
                      .++.++.+++.....+  ..+.+.+..+..+++.+.+.++   ++..+.+ +-+.+.++.++..+..++-++...|
T Consensus       202 ~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g  275 (435)
T PF03378_consen  202 PILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG  275 (435)
T ss_dssp             HHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence            6888888888766543  4578899999999998765554   3333333 3345566666666666666665544

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.88  E-value=3.8  Score=39.29  Aligned_cols=182  Identities=15%  Similarity=0.103  Sum_probs=123.1

Q ss_pred             hHHHHHHhhcCC-ChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014        367 LLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR  445 (615)
Q Consensus       367 l~p~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr  445 (615)
                      +-..+.+++.-. -..|...|++....+.+.+|.+.+.+.+.+  +.                  |-+..++......||
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i--~~------------------~GLfpl~~~asi~Vk  114 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPI--YS------------------PGLFPLFSYASIQVK  114 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHH--HH------------------HHHHHHHHHHHHhhH
Confidence            344555666543 357999999999988888887766554321  11                  344455556666788


Q ss_pred             HHHHHHhHHHHhhhChHhHHHHHHHH---HHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchH
Q psy14014        446 LAIIEYMPLLAGQLGVEFFDEKLNAL---CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLH  522 (615)
Q Consensus       446 ~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~  522 (615)
                      -..++.+....-.+|+ ...+.+-+.   ++..+.|++.++-+.+...+..+...+|.+.+-+.+.-.+.     .++..
T Consensus       115 p~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~  188 (307)
T PF04118_consen  115 PQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSR  188 (307)
T ss_pred             HHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcch
Confidence            8888888877767777 334333333   44457788999999999999999999998754444444333     57778


Q ss_pred             HHHHHHHHHHHHhhhC------h-hh---H----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        523 RMTCLFCINVLAEACG------P-TV---T----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       523 R~~a~~~l~~l~~~~~------~-~~---~----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      |..|+..+..-.....      . +.   +    ...+...+...++|++.-|+.++...|-.-.+
T Consensus       189 Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  189 RLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             hHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence            9999987776554433      1 10   1    13466777888899988888888777766554

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.88  E-value=3.8  Score=40.47  Aligned_cols=58  Identities=12%  Similarity=0.016  Sum_probs=38.1

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHh
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  235 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~  235 (615)
                      ++.+.......+.+++..+..++. .....++..+.+-++|....+|+.-+..++....
T Consensus        33 KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   33 KESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            345666677777777766666522 2345677777777777777788777777766654

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.83  E-value=0.88  Score=44.94  Aligned_cols=87  Identities=17%  Similarity=0.095  Sum_probs=54.3

Q ss_pred             HHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHH
Q psy14014         29 LRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR  107 (615)
Q Consensus        29 ~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr  107 (615)
                      .|....+.|..+...--...+.+.+.|++..   +.+| .......+|+.-...+ +.+..+.++..+...+++..+.+|
T Consensus         3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K---E~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR   78 (339)
T PF12074_consen    3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSK---ESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVR   78 (339)
T ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHH
Confidence            4555555555553210112233444444432   2334 6777777777654433 334457788889999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy14014        108 DKAVESLRLISA  119 (615)
Q Consensus       108 ~~a~~~l~~l~~  119 (615)
                      ..++..++....
T Consensus        79 ~~w~~~~~~~~~   90 (339)
T PF12074_consen   79 RAWLLCLGEALW   90 (339)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998776

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=94.71  E-value=5.6  Score=40.65  Aligned_cols=75  Identities=23%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             hHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH---HhHHHHHHHhcC
Q psy14014        181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSG  255 (615)
Q Consensus       181 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~  255 (615)
                      .+.|-.++++||.++..++.+......-+.+..+++.....-|..+.-.+...+.........   +.+.+.+...++
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~  178 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE  178 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence            456666777777777666544333323335666666666666666666666666555432111   234444555444

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.63  E-value=1  Score=44.24  Aligned_cols=137  Identities=13%  Similarity=0.201  Sum_probs=83.9

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC-------chhHHHHHHHHHHHHHhh--cCh
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-------QDSVRLLAVEACVSIASL--LSQ  239 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-------~~~vr~~a~~~l~~l~~~--~~~  239 (615)
                      +..+...+.+.+...|..++..|..       +...+.++|.|..++.+.       +...-...+.....+..+  +.-
T Consensus       180 f~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l  252 (343)
T cd08050         180 FEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL  252 (343)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence            3444455556677777776665433       344678999999888654       222222223333333322  112


Q ss_pred             hhHHHhHHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCCc--HHHHHHHH
Q psy14014        240 SDVEQLVMPTLRQCS----------GDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDSE--AEVRAAAA  305 (615)
Q Consensus       240 ~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~  305 (615)
                      +.+...++|.+..++          .+.+|.+|..++..++.++..++...  ....+...+.+.+.|+.  ...+-.|+
T Consensus       253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi  332 (343)
T cd08050         253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI  332 (343)
T ss_pred             HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence            344555777776654          35679999999999999999888653  23456656666666654  23366777


Q ss_pred             HHHHHHH
Q psy14014        306 NKVRDFC  312 (615)
Q Consensus       306 ~~l~~~~  312 (615)
                      ..|..++
T Consensus       333 ~GL~~lG  339 (343)
T cd08050         333 VGLSALG  339 (343)
T ss_pred             HHHHHhC
Confidence            7776654

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.51  E-value=1.1  Score=37.47  Aligned_cols=102  Identities=18%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +..++|..-..++..+..      ........+..+.+.+.+.++.|...|+..|..+.++++.....+.....++..+.
T Consensus        13 l~~~dw~~il~icD~I~~------~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~   86 (144)
T cd03568          13 LTSENWGLILDVCDKVKS------DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK   86 (144)
T ss_pred             CCCcCHHHHHHHHHHHhc------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            345677654444443332      11234577888889999999999999999999999999987766666677888888


Q ss_pred             HhhCC-CCHHHHHHHHHHHHhhchhhcch
Q psy14014        334 DLVAD-PNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       334 ~~~~d-~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      +++.+ .+..||.-++..+...+..+..+
T Consensus        87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          87 KLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            88887 78899998888888877766543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.33  E-value=3.6  Score=37.41  Aligned_cols=134  Identities=15%  Similarity=0.148  Sum_probs=94.0

Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC-CChHHHHHH-HHHHHHHHHHhCccchh
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD-TSWRVRYMV-ADKFTDLQKAVGPEITK  282 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~-~~~l~~l~~~~~~~~~~  282 (615)
                      .........+..++..+.|..|+..+.......     ....++.+...+.+ ++|.+-..+ ...++.+...      .
T Consensus        50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~-----~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~  118 (213)
T PF08713_consen   50 EELYELADELWESGYREERYLALLILDKRRKKL-----TEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------H  118 (213)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------H
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh-----hHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------h
Confidence            345667777888888899988888776543322     22356666666655 567666665 4445555432      1


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      +.+.+.+.+.++++++-+|..++..+-.+...        ...+.++..+...+.|++..||.++.++|..++..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            56888899999999999999888777554443        12466777888889999999999999999988754

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.31  E-value=6.4  Score=39.38  Aligned_cols=192  Identities=11%  Similarity=0.045  Sum_probs=98.4

Q ss_pred             ChHHHHHHHHhHHHHHHHhchhh--hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCC
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDT  257 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~  257 (615)
                      +..+-...+.++..+....+...  ....-+|.+...+-+....+|..|+.....+...++++......+....+....+
T Consensus       147 s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~  226 (372)
T PF12231_consen  147 SKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLEN  226 (372)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccc
Confidence            33344444444444444443311  1223455555555567788898888888777777776543333222222211122


Q ss_pred             ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC
Q psy14014        258 SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA  337 (615)
Q Consensus       258 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~  337 (615)
                      . .+.....+-+..+...-+......++...+..++.+.-                     ...-.+.+..+......++
T Consensus       227 ~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~---------------------~~~w~~~n~wL~v~e~cFn  284 (372)
T PF12231_consen  227 G-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR---------------------LDSWEHLNEWLKVPEKCFN  284 (372)
T ss_pred             c-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch---------------------hhccHhHhHHHHHHHHHhc
Confidence            2 34444444444443322222223345555555553322                     0111245566677777899


Q ss_pred             CCCHHHHHHHHHHHHhhchhhcchhh-----hhhhHHHHHHhhcC-CCh----hHHHHHHHhhhHh
Q psy14014        338 DPNQHVKSALASVIMGLSPILGKHNT-----VDHLLPLFLSQLKD-ECP----EVRLNIISNLDCV  393 (615)
Q Consensus       338 d~~~~vR~~~~~~l~~l~~~~g~~~~-----~~~l~p~l~~~l~d-~~~----~vr~~a~~~l~~l  393 (615)
                      ++++.+|..+..+...+......+..     ..-+..++...++. ...    +++..++..++.+
T Consensus       285 ~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l  350 (372)
T PF12231_consen  285 SSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL  350 (372)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence            99999999999998888775543221     12222333334432 222    6777777666544

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=94.26  E-value=1.3  Score=39.40  Aligned_cols=162  Identities=14%  Similarity=0.137  Sum_probs=92.1

Q ss_pred             HHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHH
Q psy14014        446 LAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR  523 (615)
Q Consensus       446 ~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R  523 (615)
                      ..++..+..+...+|...  ....++..+-++-.+++...|..+-.++|..+..+|++.+.+ ++|--++. .+....-|
T Consensus        18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~r   95 (198)
T PF08161_consen   18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPGR   95 (198)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCccc
Confidence            445666666666666542  122233334445566678899999999999999999986553 55522221 22333334


Q ss_pred             HHHHHHHHHHHhhhChhhHHHhhHHHHHhhCC------CCCchHHHHHHHHH-HHHhHhhh-----h----hhHHhhHHH
Q psy14014        524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAG------DNVANVRFNVAKTL-QKIGPILE-----T----NVIQSQVKP  587 (615)
Q Consensus       524 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------D~~~~vr~~a~~~l-~~l~~~~~-----~----~~~~~~~~~  587 (615)
                      .-.+=.+..-.....-.+|.++++|....+-+      .....+-.....++ .++=..++     +    +.+ ..+-+
T Consensus        96 aWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~a~  174 (198)
T PF08161_consen   96 AWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSFAK  174 (198)
T ss_pred             chhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHHHH
Confidence            44444444444445567788888887666421      12222222222222 22211111     1    233 55566


Q ss_pred             HHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        588 ALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       588 ~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                      .+..++.|+ ++.|...+.|++.+
T Consensus       175 ~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  175 LLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHhcC-cchHHHHHHHHHHH
Confidence            666666665 89999999999875

>KOG2022|consensus

Probab=94.26  E-value=9.6  Score=41.20  Aligned_cols=186  Identities=12%  Similarity=0.094  Sum_probs=118.3

Q ss_pred             hhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCC-----hHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhc---
Q psy14014        145 SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT-----PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ---  216 (615)
Q Consensus       145 ~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~---  216 (615)
                      .|..-..++-..|..+++...+.+...+-+++.|.+     |..-.+++-.+-.++...+...  ...+|-+.+..-   
T Consensus       440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik  517 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIK  517 (982)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccc
Confidence            344444555566666666666666667777776665     7888888889999998887642  233555544432   


Q ss_pred             --cCchhHHHHHHHHHHHHHhhcChhh-HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHH
Q psy14014        217 --DEQDSVRLLAVEACVSIASLLSQSD-VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQM  291 (615)
Q Consensus       217 --d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~  291 (615)
                        -.++..-..+...++.++..+++.. ..+..+|.+.+.+..+..  -..+...+.++++....+.  ..++++.....
T Consensus       518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e  595 (982)
T KOG2022|consen  518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYE  595 (982)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence              2366777888999999998887653 345577888887764433  2334445777777655443  23455555555


Q ss_pred             hhcCC--cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHH
Q psy14014        292 LLKDS--EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKD  334 (615)
Q Consensus       292 ~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~  334 (615)
                      .+...  .+..|....+++|.+...+.++.+.+.....+-|++.+
T Consensus       596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~q  640 (982)
T KOG2022|consen  596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQ  640 (982)
T ss_pred             HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHH
Confidence            44332  35779999999999998877665554444444444433

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.14  E-value=8.2  Score=39.98  Aligned_cols=150  Identities=15%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             hHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhh--ccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc
Q psy14014        284 DLVQAFQMLLK-DSEAEVRAAAANKVRDFCQN--LDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       284 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      .++..+...+. ...++.-.+++..++.+..+  +|.+     ....++..|....+-.  .....+-+++.+++..-. 
T Consensus       176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~-----sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~-  247 (464)
T PF11864_consen  176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSE-----SLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL-  247 (464)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChH-----HHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc-
Confidence            34444444432 23333336777777777663  3332     2344444554443322  334444445555553211 


Q ss_pred             hhhhhhhHHHHHHhhc--C----CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHH
Q psy14014        361 HNTVDHLLPLFLSQLK--D----ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV  434 (615)
Q Consensus       361 ~~~~~~l~p~l~~~l~--d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~  434 (615)
                         ....+-.+...+.  +    ++..+-.+|+..+..+.-..+.+.          +|.+.      +-...+. |.+.
T Consensus       248 ---g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~----------~~~l~------~~~~~vl-~sl~  307 (464)
T PF11864_consen  248 ---GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQG----------YPSLP------FSPSSVL-PSLL  307 (464)
T ss_pred             ---HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCC----------cceec------ccHHHHH-HHHH
Confidence               1233445555552  2    345666788887776543332211          11110      0000111 5666


Q ss_pred             HhhhcCCchHHHHHHHHhHHHH-hhhCh
Q psy14014        435 ELAEDSKWRVRLAIIEYMPLLA-GQLGV  461 (615)
Q Consensus       435 ~~~~~~~~~vr~~~~~~l~~l~-~~~~~  461 (615)
                      ..++..+.++=..++..+..+. +.++.
T Consensus       308 ~al~~~~~~v~~eIl~~i~~ll~~~~~~  335 (464)
T PF11864_consen  308 NALKSNSPRVDYEILLLINRLLDGKYGR  335 (464)
T ss_pred             HHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence            6777666666666666666665 44443

>KOG2549|consensus

Probab=94.14  E-value=2  Score=43.51  Aligned_cols=59  Identities=15%  Similarity=0.249  Sum_probs=46.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHh
Q psy14014        477 VDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAE  535 (615)
Q Consensus       477 ~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~  535 (615)
                      .|..|.+|.-|+..+..+++.++...  ....++.++.+.+.|+  .+..+..++.++..++.
T Consensus       308 ~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~  370 (576)
T KOG2549|consen  308 LDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGH  370 (576)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence            46789999999999999999998642  3455777777777665  66778888888888764

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.12  E-value=5.7  Score=38.12  Aligned_cols=124  Identities=17%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHhhh---HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH---HHHhC
Q psy14014        104 TVVRDKAVESLRLISAQHSPHDLEAH---FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF---RNLCQ  177 (615)
Q Consensus       104 ~~vr~~a~~~l~~l~~~~~~~~~~~~---~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l---~~l~~  177 (615)
                      ..|...|.++...+.+.++++.+...   ..|=+..+.......+|..-..++...+-.+++....-+.+++   +..+.
T Consensus        69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLe  148 (307)
T PF04118_consen   69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLE  148 (307)
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccc
Confidence            46888899999999998888766543   2333333333334567777777777666666665544444444   44457


Q ss_pred             CCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHH
Q psy14014        178 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS  232 (615)
Q Consensus       178 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~  232 (615)
                      |++.++...+...+..+...++.+.++..+.-.+.     .++.+|..|+..+..
T Consensus       149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~  198 (307)
T PF04118_consen  149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLR  198 (307)
T ss_pred             cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHH
Confidence            78888889999999999888888766665555544     457788887777654

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>KOG1222|consensus

Probab=93.98  E-value=7.4  Score=38.86  Aligned_cols=119  Identities=13%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCC
Q psy14014        221 SVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDS  296 (615)
Q Consensus       221 ~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~  296 (615)
                      ..-+.|+..+..+++.+.-+  .....++.++.+.++-.+...-..+...+-.++....+...  ...++.-+.+++.-+
T Consensus       278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            34456677777788777654  23445777888877766655555555555555544333322  235778888999999


Q ss_pred             cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCH
Q psy14014        297 EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQ  341 (615)
Q Consensus       297 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~  341 (615)
                      +++.|...+..+-.+..  ....+.+.+...++|.+..++++...
T Consensus       358 h~dL~~~tl~LlfNlSF--D~glr~KMv~~GllP~l~~ll~~d~~  400 (791)
T KOG1222|consen  358 HPDLRKATLMLLFNLSF--DSGLRPKMVNGGLLPHLASLLDSDTK  400 (791)
T ss_pred             CHHHHHHHHHHhhhccc--cccccHHHhhccchHHHHHHhCCccc
Confidence            99999988877765543  23333344566788999888876543

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.93  E-value=1.3  Score=37.47  Aligned_cols=142  Identities=19%  Similarity=0.222  Sum_probs=84.6

Q ss_pred             hHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC-CCh
Q psy14014        181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD-TSW  259 (615)
Q Consensus       181 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~  259 (615)
                      +-||...+.++..++...-++. |+.+++-+.+.++.+ +......+..+..+.+.+.+             ..+. ...
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~   66 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence            3578889999999988764443 778888888887763 45555666666665544322             0011 122


Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCC----cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHh
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS----EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDL  335 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~  335 (615)
                      ..|...-..+..-         .+.++..+.+.+...    ..++...+++++..+...++.+.   .....+++.+.+.
T Consensus        67 ~r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~---i~~~~~l~~~~~~  134 (148)
T PF08389_consen   67 ERRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL---IINSNLLNLIFQL  134 (148)
T ss_dssp             HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH---HHSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH---hccHHHHHHHHHH
Confidence            3344444333332         234555555555433    27889999999999988665442   1223477777777


Q ss_pred             hCCCCHHHHHHHHHHH
Q psy14014        336 VADPNQHVKSALASVI  351 (615)
Q Consensus       336 ~~d~~~~vR~~~~~~l  351 (615)
                      +++++-  |..|+++|
T Consensus       135 l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen  135 LQSPEL--REAAAECL  148 (148)
T ss_dssp             TTSCCC--HHHHHHHH
T ss_pred             cCCHHH--HHHHHHhC
Confidence            755443  66665543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.84  E-value=2.2  Score=35.67  Aligned_cols=102  Identities=13%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +.+++|..-..++..+..      ......+.+-.+.+.+++.++.+...|+..|..+.++++.....+.....++..+.
T Consensus        17 l~~~dw~~ileicD~In~------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~   90 (142)
T cd03569          17 LGEPDLASILEICDMIRS------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK   90 (142)
T ss_pred             cCccCHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            345777655544444332      11234577888889999999999999999999999999877665555566777777


Q ss_pred             HhhC-CCCHHHHHHHHHHHHhhchhhcch
Q psy14014        334 DLVA-DPNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       334 ~~~~-d~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      +++. ..++.||.-++..+..-+..++.+
T Consensus        91 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          91 DLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            7665 567889988888887777766544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=93.74  E-value=9.1  Score=39.14  Aligned_cols=74  Identities=16%  Similarity=0.133  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh--h--HHHHHHHHHHHhC
Q psy14014        104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--V--KAELRSHFRNLCQ  177 (615)
Q Consensus       104 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~l~~  177 (615)
                      -..|..|+.+|+.++.+++.......+-+.+....++.+...|..++-++...+......  .  ...+.+.+...+.
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~  178 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE  178 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence            456778888888888888776666666666666677777777777766666554443211  1  2344455555555

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG0946|consensus

Probab=93.73  E-value=11  Score=40.15  Aligned_cols=213  Identities=15%  Similarity=0.100  Sum_probs=117.4

Q ss_pred             CCCCCCCCcchHHHHHHHhcCc-cHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCC--cHHHHHHHHHHhccccC
Q psy14014          4 SDSAPDDSLYPIAVLIDELKNE-DVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTP   80 (615)
Q Consensus         4 ~~~~~~~~~~~i~~ll~~l~s~-d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~vr~~a~~~l~~l~~   80 (615)
                      ++++.+..-..|..+.+...+. =+.-|..|++.|..+++.+-.+.....+-|++.-+-.|  +.+....+...+-.+..
T Consensus        13 q~~k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   13 QPPKQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             CCCccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            4455556667899999988764 44579999999999998765554445555555544433  22333333322222211


Q ss_pred             CCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH-hhhHHHHHHHhhcCCCcchhhhHHhhhhhhccC
Q psy14014         81 NVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (615)
Q Consensus        81 ~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~  159 (615)
                                         .++.+.|-+-.. .-..++.++.+..+ .+..+..+.......++.+|..++.++..+...
T Consensus        93 -------------------~dd~~~v~dds~-qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~  152 (970)
T KOG0946|consen   93 -------------------HDDSPEVMDDST-QSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC  152 (970)
T ss_pred             -------------------cCcchhhcccch-hhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc
Confidence                               111111111111 11122222222111 123444555555555677777777777777777


Q ss_pred             CChhhHHHHH------HHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccC----chhHHHHH
Q psy14014        160 VTAGVKAELR------SHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDE----QDSVRLLA  226 (615)
Q Consensus       160 ~~~~~~~~l~------~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~----~~~vr~~a  226 (615)
                      .+.+.+.-++      ..++.++.|....+|..++-.|.++.+..+.   -...+.++.-+..++..+    -..|-.-|
T Consensus       153 r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDC  232 (970)
T KOG0946|consen  153 RPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDC  232 (970)
T ss_pred             CCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence            6665554433      2456778898889999999988888875443   112233444444444322    23566667


Q ss_pred             HHHHHHHHhh
Q psy14014        227 VEACVSIASL  236 (615)
Q Consensus       227 ~~~l~~l~~~  236 (615)
                      +..+..+.+.
T Consensus       233 L~ll~NLLK~  242 (970)
T KOG0946|consen  233 LILLNNLLKN  242 (970)
T ss_pred             HHHHHHHHhh
Confidence            7766666554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.53  E-value=7.9  Score=37.71  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCccchh--hhHHHHHHHhhcC----CcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK--TDLVQAFQMLLKD----SEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      .+.++++.+++.+...++..+..+....+.....  .++++.+.+.+++    ++.+++..++.++..++..  +..+..
T Consensus       109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~R~~  186 (312)
T PF03224_consen  109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEYRQV  186 (312)
T ss_dssp             HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chhHHH
Confidence            3444777789999999999988888765544322  2566666666554    4566778888999888762  333332


Q ss_pred             HHHHhhHHHHHHhh-----CC--CCHHHHHHHHHHHHhhc--hhhcchhhhhhhHHHHHHhhcCC-ChhHHHHHHHhhhH
Q psy14014        323 IIMTYILPYVKDLV-----AD--PNQHVKSALASVIMGLS--PILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDC  392 (615)
Q Consensus       323 ~~~~~l~p~l~~~~-----~d--~~~~vR~~~~~~l~~l~--~~~g~~~~~~~l~p~l~~~l~d~-~~~vr~~a~~~l~~  392 (615)
                      .+....++.+..++     .+  .+.++.-.++-++..++  ...-.......++|.+.+.+++. -+.|-+-++..+..
T Consensus       187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N  266 (312)
T PF03224_consen  187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN  266 (312)
T ss_dssp             HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            33344555555555     22  23344444444444432  11111222334888888888763 34555555556655


Q ss_pred             hhhhh
Q psy14014        393 VNEVI  397 (615)
Q Consensus       393 l~~~~  397 (615)
                      ++...
T Consensus       267 l~~~~  271 (312)
T PF03224_consen  267 LLSKA  271 (312)
T ss_dssp             TTSSS
T ss_pred             HHhcc
Confidence            55443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2213|consensus

Probab=93.30  E-value=8.5  Score=37.41  Aligned_cols=68  Identities=18%  Similarity=0.109  Sum_probs=38.7

Q ss_pred             HHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcC
Q psy14014        182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSG  255 (615)
Q Consensus       182 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~  255 (615)
                      .-++.+.+.++.+.++++.-  -...+..-..++.|.+-.||..|+.-|..+|..    ...+.+.+.+.++++
T Consensus        39 k~k~lasq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             HHHHHHHHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            34455566666666665431  123344445566677777777777777666654    334455555555554

>KOG2081|consensus

Probab=93.27  E-value=11  Score=38.59  Aligned_cols=146  Identities=13%  Similarity=0.127  Sum_probs=97.3

Q ss_pred             CchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC--C
Q psy14014        441 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD--Q  518 (615)
Q Consensus       441 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~  518 (615)
                      ....|....+.+..++...|.......+.-.+..  +.+.|+.-++++..+..+++.+.++  .+.++|.+++.+..  .
T Consensus       365 f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~  440 (559)
T KOG2081|consen  365 FFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPE  440 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCcc
Confidence            3557888899999988888876543333222222  4678999999999999999998765  34688888875432  2


Q ss_pred             CchHHHHHHHHHHHHHhhhChh-hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--hhHHhhHHHHHhhh
Q psy14014        519 NYLHRMTCLFCINVLAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVIQSQVKPALDKL  592 (615)
Q Consensus       519 ~~~~R~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l  592 (615)
                      ...+|..++.-+|.+.+..... .+.+.++..+...+.+..  ....++.++..++..+..  ....+++..+...+
T Consensus       441 Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l  515 (559)
T KOG2081|consen  441 QAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSL  515 (559)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            4459999999999998876542 234455555566565554  555666777777665532  23344555555444

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.12  E-value=0.44  Score=40.82  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh-----HHHHHHHHHHH
Q psy14014        101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV-----KAELRSHFRNL  175 (615)
Q Consensus       101 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~l  175 (615)
                      ...+++|..+.-++.++. ...++...+.+..++.....+........+...+..+++..++-.     .+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            457789999999888886 333345566677777777666555566667777777777664321     24455666666


Q ss_pred             hC--CCChHHHHHHHHhHHHHHHHh-chhhhHhhhHHHHHHhhc-cCchh-HHHHHHHHHH
Q psy14014        176 CQ--DDTPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMFVNLAQ-DEQDS-VRLLAVEACV  231 (615)
Q Consensus       176 ~~--d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~~~-d~~~~-vr~~a~~~l~  231 (615)
                      +.  .++..+...+++.+..=|..- ..........+.+.+..+ ++++. +|..|.-.|.
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            66  567777777777765543211 112234456677777774 44444 6766655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2149|consensus

Probab=93.08  E-value=1.6  Score=42.45  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=71.9

Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHhChHHh--hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh---HHHhh
Q psy14014        472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWA--QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV---TANFL  546 (615)
Q Consensus       472 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i  546 (615)
                      ++..+.+.+..||..|+..+.++.........  ...+++.+..+..|.+..+|......+..++....+..   +..-+
T Consensus        63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~  142 (393)
T KOG2149|consen   63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL  142 (393)
T ss_pred             HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence            45556777888888888887777766222211  12355666667778888888888777777665544333   23456


Q ss_pred             HHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh
Q psy14014        547 LPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  579 (615)
Q Consensus       547 ~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~  579 (615)
                      +|.+...+....+.+|.-+..-+..+...+++.
T Consensus       143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            677777777778888888888888777777543

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=92.96  E-value=0.74  Score=39.45  Aligned_cols=75  Identities=23%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH--HHhhHHHHHhh
Q psy14014        478 DHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT--ANFLLPTVLNM  553 (615)
Q Consensus       478 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~  553 (615)
                      |.-.++|.+|.+++..+...+........+++.+...+.| +..+|.-+...+..++...+....  .+.+.+.+.+.
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~  114 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT  114 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999765443345578889999999 999999999999999866544332  23444545443

; PDB: 4A0C_A 1U6G_C.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=92.88  E-value=2.7  Score=40.18  Aligned_cols=135  Identities=15%  Similarity=0.173  Sum_probs=78.6

Q ss_pred             hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh---HH-----HhHHHHHHHhcC--------CCChHHHHHHH
Q psy14014        203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VE-----QLVMPTLRQCSG--------DTSWRVRYMVA  266 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~~~--------d~~~~vR~~~~  266 (615)
                      .+..++|.+..++.|.+..+|..++.++..+...++...   +.     +.+.+.+..++.        +++..+=..+.
T Consensus       116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay  195 (282)
T PF10521_consen  116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY  195 (282)
T ss_pred             hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence            466677777777777777778777777777777666544   22     123333444433        55666666666


Q ss_pred             HHHHHHHHHhCcc---chhhhHHHH----HHHhh----cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHh
Q psy14014        267 DKFTDLQKAVGPE---ITKTDLVQA----FQMLL----KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDL  335 (615)
Q Consensus       267 ~~l~~l~~~~~~~---~~~~~l~~~----l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~  335 (615)
                      .++-.+......+   .....+...    ++..+    +-+.+.++...++.+..++..++....  .++..++|.+.+.
T Consensus       196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~--~hL~rii~~l~~~  273 (282)
T PF10521_consen  196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSV--KHLQRIIPVLSQI  273 (282)
T ss_pred             HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHH
Confidence            6666665442111   111111111    22222    123578888888888888887765432  3566777777776


Q ss_pred             hCCC
Q psy14014        336 VADP  339 (615)
Q Consensus       336 ~~d~  339 (615)
                      +.++
T Consensus       274 l~np  277 (282)
T PF10521_consen  274 LENP  277 (282)
T ss_pred             hcCC
Confidence            6654

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=92.81  E-value=14  Score=38.69  Aligned_cols=74  Identities=9%  Similarity=0.098  Sum_probs=48.4

Q ss_pred             hHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        284 DLVQAFQMLL-KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       284 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      +++-.+..++ .++...+|.+.+..++.+++..-++...+...+.+.-.+.-++.|.+|-+++.++++++.+++.
T Consensus       479 qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~  553 (559)
T PF14868_consen  479 QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER  553 (559)
T ss_pred             HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence            4444455555 4455568888888888888766554433333444444445567888888888888888877764

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.60  E-value=4.4  Score=35.90  Aligned_cols=72  Identities=18%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcC
Q psy14014        165 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS  238 (615)
Q Consensus       165 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~  238 (615)
                      .+..++.+++++.+++..+|..+++.+..+.+..--  .....+|.+..+..|+++.+|..|...+..+.+.-+
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            344556677888999999999999999988764321  124688999999999999999999999998876544

>KOG0803|consensus

Probab=92.58  E-value=23  Score=41.14  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=52.9

Q ss_pred             chhHHHHHHHHHHHHHhhcChhhH---HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhh
Q psy14014        219 QDSVRLLAVEACVSIASLLSQSDV---EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLL  293 (615)
Q Consensus       219 ~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l  293 (615)
                      +...|.-|++.+.++......+..   .+.....+.+++.|.+..||...-..+..+...+++...  ...++|...-..
T Consensus        54 D~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~  133 (1312)
T KOG0803|consen   54 DETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQ  133 (1312)
T ss_pred             ChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhee
Confidence            344455555555555544443322   222333445667777777777777777776666554432  234666666666


Q ss_pred             cCCcHHHHHHHHHHHHHH
Q psy14014        294 KDSEAEVRAAAANKVRDF  311 (615)
Q Consensus       294 ~d~~~~vr~~a~~~l~~~  311 (615)
                      .|.+..|-.+|...+...
T Consensus       134 ~d~~~~vs~aa~~sf~~~  151 (1312)
T KOG0803|consen  134 FDLDYPVSEAAKASFKDG  151 (1312)
T ss_pred             cccchHHHHHHHHHHHhh
Confidence            677777766666665543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=92.57  E-value=13  Score=37.69  Aligned_cols=226  Identities=11%  Similarity=0.111  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhcc-CchhHHHHHHHHHHHHHhhcC---
Q psy14014        165 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLS---  238 (615)
Q Consensus       165 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---  238 (615)
                      -..++..+..++..+|++-|......+..+......  ......+...+.+++.+ ....--...++.++.+...+.   
T Consensus       131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl  210 (409)
T PF01603_consen  131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL  210 (409)
T ss_dssp             -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred             CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence            345566677888999999999999988887665433  23344555566666543 333444556777777777654   


Q ss_pred             hhhHHHhHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        239 QSDVEQLVMPTLRQCSGDTSWR-VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       239 ~~~~~~~l~~~l~~~~~d~~~~-vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                      ++.....+...+.-+.+.+... .-.....++..+...-+.  ....++..+++.---.++.=....+.-+..++..+++
T Consensus       211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~  288 (409)
T PF01603_consen  211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPP  288 (409)
T ss_dssp             -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--H
T ss_pred             cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCH
Confidence            2222233333333333333321 233444444444432110  1122333333333334443334556667777776654


Q ss_pred             cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhh--chhhcchhhhhhhHHHHHHhhcC---C--ChhHHHHHHHhh
Q psy14014        318 YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL--SPILGKHNTVDHLLPLFLSQLKD---E--CPEVRLNIISNL  390 (615)
Q Consensus       318 ~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l--~~~~g~~~~~~~l~p~l~~~l~d---~--~~~vr~~a~~~l  390 (615)
                      +.. ..+...++..+.+++++++.+|-..|+..+.+-  ...+.  .....++|.+...+..   .  +..||..+..++
T Consensus       289 ~~f-~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~--~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl  365 (409)
T PF01603_consen  289 EEF-QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS--QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVL  365 (409)
T ss_dssp             HHH-HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH--CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH--hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            432 245666788888899999999987776654322  22221  1223456666665432   2  457999988888


Q ss_pred             hHhhh
Q psy14014        391 DCVNE  395 (615)
Q Consensus       391 ~~l~~  395 (615)
                      ..+.+
T Consensus       366 ~~l~~  370 (409)
T PF01603_consen  366 KILME  370 (409)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77654

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=92.52  E-value=1.6  Score=34.50  Aligned_cols=70  Identities=9%  Similarity=0.069  Sum_probs=47.5

Q ss_pred             CCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHH
Q psy14014        518 QNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL  589 (615)
Q Consensus       518 ~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  589 (615)
                      .....|..++++++.+.+.+++..  +.++++..|...+..+  ++|..+++++..++..++.+...+.+..++
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~   98 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF   98 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            466778888999999888444322  3455666666655554  888899999999988887655444444333

; GO: 0004674 protein serine/threonine kinase activity

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.51  E-value=3.4  Score=34.23  Aligned_cols=101  Identities=12%  Similarity=0.130  Sum_probs=71.2

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      ..+++|..-..++..+..-      .......+..+.+.+++.++.++..|+..|..+.++++...........++..+.
T Consensus        13 ~~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~   86 (133)
T cd03561          13 LEEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV   86 (133)
T ss_pred             cCCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH
Confidence            3457776655555444321      1234577888999999999999999999999999999876554333345555566


Q ss_pred             HhhCC---CCHHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVAD---PNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d---~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++..   .+..||.-++..+..-...++.
T Consensus        87 ~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          87 KIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            66654   4778888888888777766654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.46  E-value=0.8  Score=39.63  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhh---hhhhcCCcH--HHHHHHHHHhccccCCCCC-cc--
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPF---LTETIYDED--EVLLALAEQLGTFTPNVGG-PE--   86 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~---l~~~~~~~~--~vr~~a~~~l~~l~~~~~~-~~--   86 (615)
                      ...+..-++|.++..|+.++.-+.......+++.+...-.++   +...++.++  .++..++..+..+.....+ ++  
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~  106 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT  106 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence            344556688999999999999999999887777443333333   333444443  4888888888887765443 22  


Q ss_pred             ------hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh
Q psy14014         87 ------YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP  123 (615)
Q Consensus        87 ------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~  123 (615)
                            +.+.+++.+.++.++  ......+++++..+....+.
T Consensus       107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence                  234444455555544  56777888888888887764

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=92.45  E-value=4.3  Score=38.77  Aligned_cols=138  Identities=12%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---h-----hhhHHHHHHHhhc--------CCcHHHHHHH
Q psy14014        241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---T-----KTDLVQAFQMLLK--------DSEAEVRAAA  304 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~--------d~~~~vr~~a  304 (615)
                      ...+.++|.+..+++|.+..+|...+.++..+....+...   .     .+.+-+.+..++-        ++...+-..+
T Consensus       115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a  194 (282)
T PF10521_consen  115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA  194 (282)
T ss_pred             HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence            3456799999999999999999999999999987665433   1     1123334444443        5556676777


Q ss_pred             HHHHHHHHhhccc---cchhHHHHHhhHHHHH-Hhh---CCCCHHHHHHHHHHHHhhchhhcchh--hhhhhHHHHHHhh
Q psy14014        305 ANKVRDFCQNLDA---YNQENIIMTYILPYVK-DLV---ADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQL  375 (615)
Q Consensus       305 ~~~l~~~~~~~~~---~~~~~~~~~~l~p~l~-~~~---~d~~~~vR~~~~~~l~~l~~~~g~~~--~~~~l~p~l~~~l  375 (615)
                      ..++-.++.....   ..+...+...+...+. .+.   +-++++++...+..+..+...+|...  ..+.++|.+.+.+
T Consensus       195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l  274 (282)
T PF10521_consen  195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL  274 (282)
T ss_pred             HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            7777777664321   1111112222222111 121   22358888888888888888777633  3566778777777


Q ss_pred             cCC
Q psy14014        376 KDE  378 (615)
Q Consensus       376 ~d~  378 (615)
                      ++.
T Consensus       275 ~np  277 (282)
T PF10521_consen  275 ENP  277 (282)
T ss_pred             cCC
Confidence            664

>KOG2759|consensus

Probab=92.45  E-value=12  Score=36.89  Aligned_cols=69  Identities=12%  Similarity=0.064  Sum_probs=52.4

Q ss_pred             chhHHHHhhhcCCC-chHHHHHHHHHHHHHhhhChhh--H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        506 TVIPKVVAMSRDQN-YLHRMTCLFCINVLAEACGPTV--T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       506 ~i~~~l~~~~~d~~-~~~R~~a~~~l~~l~~~~~~~~--~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      .++..|..+++..+ |..=..||.=+|+..++.+...  + .-.....+.++++.+|++||++|..|+..++.
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            46777777766554 6667778888999988876543  2 22466788889999999999999999988764

>KOG2149|consensus

Probab=92.38  E-value=2.9  Score=40.74  Aligned_cols=108  Identities=15%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh---HHHhHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVM  247 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~  247 (615)
                      +.-+.+.+..||+.+...+-.+....+..  .....+++...++..|++..||....+.+..+.....++.   ....++
T Consensus        64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~  143 (393)
T KOG2149|consen   64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM  143 (393)
T ss_pred             HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence            33448889999999999998887774432  2345678888888999999999999999988776666544   334577


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc
Q psy14014        248 PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI  280 (615)
Q Consensus       248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~  280 (615)
                      +++...+.+-.+.+|......+..+...+++..
T Consensus       144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~  176 (393)
T KOG2149|consen  144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTF  176 (393)
T ss_pred             HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence            888888888899999999988888888776553

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.38  E-value=0.57  Score=37.32  Aligned_cols=68  Identities=10%  Similarity=0.088  Sum_probs=44.8

Q ss_pred             hhHHHHhhh-cCCCchHHHHHHHHHHHHHhhhChhh--H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        507 VIPKVVAMS-RDQNYLHRMTCLFCINVLAEACGPTV--T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       507 i~~~l~~~~-~d~~~~~R~~a~~~l~~l~~~~~~~~--~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      ++..|.+++ .+.++.+-..||.=+|.++...+...  . .-.+...+.++++++|++||..|..++..++.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            455555555 23355566667777888777764432  1 13467778888899999999999999888764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2549|consensus

Probab=92.14  E-value=3.5  Score=41.88  Aligned_cols=139  Identities=14%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCch-h--HHH-HHHHHHHHHHhhcCh----
Q psy14014        168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD-S--VRL-LAVEACVSIASLLSQ----  239 (615)
Q Consensus       168 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~-~--vr~-~a~~~l~~l~~~~~~----  239 (615)
                      ++..+...|...++..|+.|++.|..       +.-.+.++|.|..++.+.-. .  .+. .-+..+..+.+.+-.    
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i  280 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI  280 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence            44455666677888999998887654       33467899999999876521 1  111 112223333333322    


Q ss_pred             --hhHHHhHHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCC--cHHHHHH
Q psy14014        240 --SDVEQLVMPTLRQCS----------GDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDS--EAEVRAA  303 (615)
Q Consensus       240 --~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~--~~~vr~~  303 (615)
                        +.+...++|.+..++          .|..|.+|..++..+..++..++....  ...+...+.+.+.|+  ....+-.
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG  360 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG  360 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence              344556777776653          467899999999999999988775432  346777777777776  3566777


Q ss_pred             HHHHHHHHHh
Q psy14014        304 AANKVRDFCQ  313 (615)
Q Consensus       304 a~~~l~~~~~  313 (615)
                      ++..|..+..
T Consensus       361 ai~gL~~lg~  370 (576)
T KOG2549|consen  361 AIAGLSELGH  370 (576)
T ss_pred             HHHHHHHhhh
Confidence            7777777665

>KOG2021|consensus

Probab=92.13  E-value=19  Score=38.42  Aligned_cols=114  Identities=15%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             hcCCchHHHHHHHHhHHHHhhhChHh------------HHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHHHHhChHHh
Q psy14014        438 EDSKWRVRLAIIEYMPLLAGQLGVEF------------FDEKLNALCMT--WLVDHVYAIREAATLNLKKLVEQFGSEWA  503 (615)
Q Consensus       438 ~~~~~~vr~~~~~~l~~l~~~~~~~~------------~~~~l~~~l~~--~l~d~~~~vR~~a~~~l~~l~~~~~~~~~  503 (615)
                      +..+|..-+.++..+-.+++.+..+.            ....+++.++.  .+.+++..|...-.+.+....+.+..+  
T Consensus       450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--  527 (980)
T KOG2021|consen  450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--  527 (980)
T ss_pred             CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--
Confidence            45789999999999988887653221            12234444443  345666666666666655544444432  


Q ss_pred             hhchhHHHHhh------hcCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhC
Q psy14014        504 QSTVIPKVVAM------SRDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMA  554 (615)
Q Consensus       504 ~~~i~~~l~~~------~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~  554 (615)
                       ..-+|.++..      +.+.+.+||..+...+.++.+.+....  +.+.++..+..++
T Consensus       528 -sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL  585 (980)
T KOG2021|consen  528 -SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL  585 (980)
T ss_pred             -hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2245665553      345688999999998999887765543  3344554444444

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.88  E-value=8.7  Score=34.05  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhC
Q psy14014        466 EKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       466 ~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      +..++.+++...+++..+|..|+..+..+.+. |-- -....+|.+..+..|+++.+|..|...+..+.+..+
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            45667778888889999999999999988874 421 123578999999999999999999999999987754

>KOG1848|consensus

Probab=91.72  E-value=16  Score=41.84  Aligned_cols=217  Identities=14%  Similarity=0.121  Sum_probs=126.6

Q ss_pred             hhcCchhHHHHHHHHHHHHHHhhcChhHH--hhhHHHHHHHhhcCCCc---chhhhHHhhhh----hhccCCChhhHHHH
Q psy14014         98 LATVEETVVRDKAVESLRLISAQHSPHDL--EAHFVPLVQRLASGDWF---TSRTSACGLFS----VCYPRVTAGVKAEL  168 (615)
Q Consensus        98 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~l~~~~~~---~~r~~a~~~l~----~~~~~~~~~~~~~l  168 (615)
                      ....+.-+||....+++-.+.+..++..+  ...+...+.........   .+-..+...+.    .+.+.++......+
T Consensus       850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~l  929 (1610)
T KOG1848|consen  850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDL  929 (1610)
T ss_pred             HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHH
Confidence            44566778999999999999888776433  33455555544433321   11111222222    23444556666667


Q ss_pred             HHHHHHHhCC-CChHHHHHHHHhHHHHHHHhc-----------------------------hhhhHhhhHHHHHHhhccC
Q psy14014        169 RSHFRNLCQD-DTPMVRRAAAGKLGELAKVVE-----------------------------VDYLKTDIIPMFVNLAQDE  218 (615)
Q Consensus       169 ~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~-----------------------------~~~~~~~ll~~l~~~~~d~  218 (615)
                      ++.+...+.. .|..+--.++..+=.+...+.                             ++..|-.++-.+..++.|+
T Consensus       930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen  930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred             HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence            7766665532 344444444443322222111                             1334556777788888999


Q ss_pred             chhHHHHHHHHHHHHHh----hcChh----hHHHhHHHHHHHhc-C-CCChHH-------HHHHHHHHHHHHHHhCccch
Q psy14014        219 QDSVRLLAVEACVSIAS----LLSQS----DVEQLVMPTLRQCS-G-DTSWRV-------RYMVADKFTDLQKAVGPEIT  281 (615)
Q Consensus       219 ~~~vr~~a~~~l~~l~~----~~~~~----~~~~~l~~~l~~~~-~-d~~~~v-------R~~~~~~l~~l~~~~~~~~~  281 (615)
                      -.+||..|++++-.+..    .++..    .+...++|++...- + -.+|.-       -...+..++.+++.+..+..
T Consensus      1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred             hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999866543    34443    34556667664210 0 011211       23456667777766654321


Q ss_pred             -----------hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14014        282 -----------KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN  314 (615)
Q Consensus       282 -----------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  314 (615)
                                 -+.++..+.++..|..+++..+|++++..+...
T Consensus      1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence                       235667777788899999999999999887754

>KOG0803|consensus

Probab=91.70  E-value=5.8  Score=45.70  Aligned_cols=225  Identities=16%  Similarity=0.190  Sum_probs=125.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhc---cchhhhhhhcCCcH-HHHHHHHHHhccccCCCCC--cchh
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG---ELIPFLTETIYDED-EVLLALAEQLGTFTPNVGG--PEYV   88 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~---~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~--~~~~   88 (615)
                      ....+..+...|+..+..|+..|+++......+....   +....+.+++.|.+ .||......+..+...+..  .+|.
T Consensus        43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L  122 (1312)
T KOG0803|consen   43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL  122 (1312)
T ss_pred             HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            5667778888999999999999999987666553222   22233455666777 5999888888877755433  5678


Q ss_pred             hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH----hhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh
Q psy14014         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL----EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (615)
Q Consensus        89 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~  164 (615)
                      +.++|..--..-|.+..|-.+|...+......-...+.    ...+.+++....-..                   .+..
T Consensus       123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~-------------------~~~s  183 (1312)
T KOG0803|consen  123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKE-------------------TPDS  183 (1312)
T ss_pred             HhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhcc-------------------Cccc
Confidence            88888877777777788888887777665441111111    112222222211000                   0000


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhH---------hhhHHHHHHhhccCchhHHHHHHHHHHHHHh
Q psy14014        165 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK---------TDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  235 (615)
Q Consensus       165 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---------~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~  235 (615)
                      ..........-.+....+|-..++.++..+.+..+++.-.         -.-...+..+.++..+.+|.+..+.+..+..
T Consensus       184 lSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~  263 (1312)
T KOG0803|consen  184 LSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID  263 (1312)
T ss_pred             cchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence            0000000001111122233333444444444333321111         1123567788899999999999998888776


Q ss_pred             hcChh---hHHHhHHHHHHHhcCCCC
Q psy14014        236 LLSQS---DVEQLVMPTLRQCSGDTS  258 (615)
Q Consensus       236 ~~~~~---~~~~~l~~~l~~~~~d~~  258 (615)
                      .+..-   ....++.|.+.....+.+
T Consensus       264 ~i~~~~~~~~~~~l~~~~~~~~~~~d  289 (1312)
T KOG0803|consen  264 DILNRVMESEKNYLKPVLLGSIDSLD  289 (1312)
T ss_pred             hhHHhcchhhhhHhhHHHHccccccc
Confidence            65532   223455566655555544

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=91.57  E-value=4.5  Score=33.48  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +.+++|..-..++..+..      ........+..+.+.+++.++.+...|+..+..+.++++...........++..+.
T Consensus        13 l~~~dw~~~l~icD~i~~------~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~   86 (133)
T smart00288       13 LLEEDWELILEICDLINS------TPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV   86 (133)
T ss_pred             CCCcCHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence            345677654444333221      11224567888999999999999999999999999999887665555566777777


Q ss_pred             HhhCCCC--HHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVADPN--QHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d~~--~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++.++.  +.||..++..+..-+..+..
T Consensus        87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       87 KLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            7776643  34888888777776666543

Unpublished observations. Domain of unknown function.

>KOG1848|consensus

Probab=91.44  E-value=22  Score=40.77  Aligned_cols=222  Identities=16%  Similarity=0.133  Sum_probs=125.0

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhh--hHhhhHHHHHHhhccC---chhHHHHHHHHHHHHHhhcCh---hhHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDE---QDSVRLLAVEACVSIASLLSQ---SDVEQ  244 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~---~~~~~  244 (615)
                      ...+..+--+||....+++..+.+..|...  .|..++.++.....-.   ...+-+.+..++.-++..+-.   ..+..
T Consensus       848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            344555667888888899988888776522  1566666666554322   345555666666655544322   23344


Q ss_pred             hHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc-------------------------chhh----hHHHHHHHhhc
Q psy14014        245 LVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE-------------------------ITKT----DLVQAFQMLLK  294 (615)
Q Consensus       245 ~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~-------------------------~~~~----~l~~~l~~~l~  294 (615)
                      .++..+..+.. ..+..+--.++..|..++..+.++                         ...+    -++..+.+++.
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence            45555544432 233333344444444433332210                         0011    13455677889


Q ss_pred             CCcHHHHHHHHHHHHHHHhhccccch----hHHHHHhhHHHHHHhh-C-CCCH---HH----HHHHHHHHHhhchhhcch
Q psy14014        295 DSEAEVRAAAANKVRDFCQNLDAYNQ----ENIIMTYILPYVKDLV-A-DPNQ---HV----KSALASVIMGLSPILGKH  361 (615)
Q Consensus       295 d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~l~p~l~~~~-~-d~~~---~v----R~~~~~~l~~l~~~~g~~  361 (615)
                      |+-++||..|++.+=++...-+....    +..+++.++|.|...- + -.+|   .+    -...+-.++.+++.+...
T Consensus      1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred             cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999887765433222    2345566666664110 0 0111   11    235566677777665431


Q ss_pred             h-----------hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        362 N-----------TVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       362 ~-----------~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      .           ..+.++..+.....+.++++...+++++.++.
T Consensus      1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            1           12345556666677889999999999876653

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=91.20  E-value=2  Score=36.87  Aligned_cols=98  Identities=12%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhh--
Q psy14014        218 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLL--  293 (615)
Q Consensus       218 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l--  293 (615)
                      +--++|++|.+++.++............++..+...+.| +..+|.-+...+.+++...+....  .+.+.+.+...+  
T Consensus        39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~  117 (169)
T PF08623_consen   39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK  117 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence            334566666666666665544433334455666666666 666666666666666543322211  123444444433  


Q ss_pred             --cC--------CcHHHHHHHHHHHHHHHhhcc
Q psy14014        294 --KD--------SEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       294 --~d--------~~~~vr~~a~~~l~~~~~~~~  316 (615)
                        ++        ...+...++++++..+...++
T Consensus       118 k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~  150 (169)
T PF08623_consen  118 KLKENAVKQEIEKQQELIRSVLRAVKALNSKIP  150 (169)
T ss_dssp             ---TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred             cCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence              22        123555667777766655443

; PDB: 4A0C_A 1U6G_C.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=91.14  E-value=16  Score=35.70  Aligned_cols=187  Identities=9%  Similarity=0.070  Sum_probs=109.3

Q ss_pred             hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----------HHhHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14014        203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----------EQLVMPTLRQCSGDTSWRVRYMVADKFTDL  272 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----------~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l  272 (615)
                      ...++++.+...+..-+.+.|+.+...+..+...-.++..          .+.++..+...-++++-..      ..|.+
T Consensus        73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~m  146 (335)
T PF08569_consen   73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDM  146 (335)
T ss_dssp             HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHH
T ss_pred             HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHH
Confidence            3456777777777777777777777777766555322210          1345555555555554211      11222


Q ss_pred             HHHhCcc------chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchh---HHHHHhhHHHHHHhhCCCCHHH
Q psy14014        273 QKAVGPE------ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQE---NIIMTYILPYVKDLVADPNQHV  343 (615)
Q Consensus       273 ~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~~~~~l~p~l~~~~~d~~~~v  343 (615)
                      ..-+-+.      ...+..+-.+.+..+.++-+|-..|...+..+... ++....   ....+.++.....++.++++-+
T Consensus       147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            1111110      00112223355677788889988888888887653 111111   1124567778888999999999


Q ss_pred             HHHHHHHHHhhchhhcchh----h--hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014        344 KSALASVIMGLSPILGKHN----T--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       344 R~~~~~~l~~l~~~~g~~~----~--~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~  396 (615)
                      |+..++.|+.+...-....    +  .+.-+..+..+++|++..+|..|+..+..++..
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            9999999998864322111    1  234567788899999999999999988877654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.06  E-value=8.4  Score=32.33  Aligned_cols=99  Identities=9%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHH
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQ  252 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  252 (615)
                      ..++|..-..+|+.+..=      +....+.+..+.+.+++.++.|...|+..+..+.++.|..-.    ...++..+.+
T Consensus        14 ~~~dw~~il~icD~I~~~------~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k   87 (144)
T cd03568          14 TSENWGLILDVCDKVKSD------ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK   87 (144)
T ss_pred             CCcCHHHHHHHHHHHhcC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            445675555555544321      112345666777778888999999999999999999987422    2346666777


Q ss_pred             hcCC-CChHHHHHHHHHHHHHHHHhCccch
Q psy14014        253 CSGD-TSWRVRYMVADKFTDLQKAVGPEIT  281 (615)
Q Consensus       253 ~~~d-~~~~vR~~~~~~l~~l~~~~~~~~~  281 (615)
                      ++++ .+..||.-+...+...+..++.+..
T Consensus        88 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~  117 (144)
T cd03568          88 LINDRVHPTVKEKLREVVKQWADEFKNDPS  117 (144)
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7777 6788999999998888888775543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=91.05  E-value=4.5  Score=31.92  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             CCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014        178 DDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL  245 (615)
Q Consensus       178 d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  245 (615)
                      ..+..-|+.+..+++.+.+..++.  ...+.+.-.+...+..  +++|..|+++|..+...++.+...+.
T Consensus        26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l~~l   93 (107)
T PF08064_consen   26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDLGPL   93 (107)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHHHHH
Confidence            467788999999999999944432  2234444444544433  38999999999999999998765443

; GO: 0004674 protein serine/threonine kinase activity

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.05  E-value=16  Score=35.56  Aligned_cols=151  Identities=14%  Similarity=0.186  Sum_probs=77.3

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH--HhHHHHH----HHhcCCCChHHHHHHHHHHHHHHHH--hCc
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE--QLVMPTL----RQCSGDTSWRVRYMVADKFTDLQKA--VGP  278 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l----~~~~~d~~~~vR~~~~~~l~~l~~~--~~~  278 (615)
                      ....|..+++.+++.++..|...+..+...-+.....  ..+++.+    .+.++.++..+...++.++..+...  +..
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~  185 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ  185 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence            3444555777789999999999999988776653322  1333444    4433334455667888888877632  111


Q ss_pred             cchhhhHHHHHHHhh-----cCC--cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHH
Q psy14014        279 EITKTDLVQAFQMLL-----KDS--EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASV  350 (615)
Q Consensus       279 ~~~~~~l~~~l~~~l-----~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~  350 (615)
                      .......++.+...+     .+.  ..++.-.++.++=.+  .+.++.........++|.+.+++++ ..++|-+-++.+
T Consensus       186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~  263 (312)
T PF03224_consen  186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL--SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI  263 (312)
T ss_dssp             HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH--TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH--hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence            111245566666666     222  233343443333221  2222222222223377777776653 456777778888


Q ss_pred             HHhhchhhc
Q psy14014        351 IMGLSPILG  359 (615)
Q Consensus       351 l~~l~~~~g  359 (615)
                      +.++...-.
T Consensus       264 l~Nl~~~~~  272 (312)
T PF03224_consen  264 LRNLLSKAP  272 (312)
T ss_dssp             HHHTTSSSS
T ss_pred             HHHHHhccH
Confidence            888776543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=91.02  E-value=24  Score=37.58  Aligned_cols=158  Identities=8%  Similarity=0.021  Sum_probs=103.5

Q ss_pred             HhhhhhhccCCChhhHHHHHHHHHHHhC-----C---CChHHHHHHHHhHHHHHHHhch-----hhhHhhhHHHHHHhhc
Q psy14014        150 CGLFSVCYPRVTAGVKAELRSHFRNLCQ-----D---DTPMVRRAAAGKLGELAKVVEV-----DYLKTDIIPMFVNLAQ  216 (615)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~ll~~l~~~~~  216 (615)
                      ...+-.+...-++...+.+++++...+.     +   .+..-...|...+..+...+..     ......+++.+...++
T Consensus       391 l~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~  470 (970)
T COG5656         391 LFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFR  470 (970)
T ss_pred             HHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhc
Confidence            3344444455566666677777665551     2   2344555677777777664332     1234467777888889


Q ss_pred             cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch-hhhHHHHH---HHh
Q psy14014        217 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT-KTDLVQAF---QML  292 (615)
Q Consensus       217 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l---~~~  292 (615)
                      ++.--.|..|.+.+..+.+.+++..+...+.+...+++++.+-.|+..++.++..+...-..+.. ..++.+.+   +.+
T Consensus       471 s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL  550 (970)
T COG5656         471 SNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL  550 (970)
T ss_pred             CcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence            99999999999999999888888888888888888999999999999999998887654322221 22333343   444


Q ss_pred             hcCCcHHHHHHHHHH
Q psy14014        293 LKDSEAEVRAAAANK  307 (615)
Q Consensus       293 l~d~~~~vr~~a~~~  307 (615)
                      .++-+.++-...+..
T Consensus       551 Sn~feiD~LS~vMe~  565 (970)
T COG5656         551 SNTFEIDPLSMVMES  565 (970)
T ss_pred             cccccchHHHHHHHH
Confidence            455555554444433

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=90.88  E-value=3.8  Score=34.32  Aligned_cols=79  Identities=13%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC--HH--HHHHHHHHHHhhchh
Q psy14014        282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN--QH--VKSALASVIMGLSPI  357 (615)
Q Consensus       282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~--~~--vR~~~~~~l~~l~~~  357 (615)
                      ..+.+..+.+.+++.++.+...|+..++.+.++++...........++..+.+++.+..  ..  ||..+...+..-+..
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            45788889999999999999999999999999988765544334456666666555332  22  788887777776666


Q ss_pred             hcc
Q psy14014        358 LGK  360 (615)
Q Consensus       358 ~g~  360 (615)
                      ++.
T Consensus       120 f~~  122 (140)
T PF00790_consen  120 FKS  122 (140)
T ss_dssp             TTT
T ss_pred             HCC
Confidence            643

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.81  E-value=1.5  Score=34.99  Aligned_cols=67  Identities=21%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             HHHHHHHHh-CCCChHHHHHHHHhHHHHHHHhchhh---hHhhhHHHHHHhhccCchhHHHHHHHHHHHHH
Q psy14014        168 LRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  234 (615)
Q Consensus       168 l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~  234 (615)
                      ++..+.+++ ...++.+-..||.=+|.+++..+...   ..-..-..+.+++++++++||..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            444555555 33477777888889999998876521   12245567788888999999999998887764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.79  E-value=8.6  Score=32.00  Aligned_cols=101  Identities=10%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +.+++|..=..++..+..     . .......+-.+.+.+++.++.|...|+..|..+.++++.....+.....++.-+.
T Consensus        14 l~~~dw~~ileicD~In~-----~-~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK-----E-PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            446778655544444422     1 1123467778888899999999999999999999999987766555566777777


Q ss_pred             HhhCC------CCHHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVAD------PNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++..      .+..||.-++..+..-+..++.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH  120 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            77743      5688988888877766665543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.11  E-value=0.72  Score=28.86  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=20.3

Q ss_pred             HhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        544 NFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       544 ~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      ...+|.|.+++.++++.|+..++.+|+++.
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            345666777777777777777777776653

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.05  E-value=0.71  Score=28.87  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLS  355 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~  355 (615)
                      ..+|.|.+++.+.+..+|..+++++++++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            35666666677777777777777766654

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=89.96  E-value=5.5  Score=37.03  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhh
Q psy14014        480 VYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       480 ~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~  536 (615)
                      .+.+|..|+..++-+++.|+...  ....+..++++..-|.  .......|++++..+.+.
T Consensus       300 ~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke  360 (450)
T COG5095         300 HYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKE  360 (450)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchh
Confidence            46799999999999999998753  2345666666654443  445677888888887643

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.90  E-value=1.6  Score=36.81  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=60.2

Q ss_pred             HHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCC------------------cchhh
Q psy14014         28 QLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG------------------PEYVH   89 (615)
Q Consensus        28 ~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~------------------~~~~~   89 (615)
                      .+|......+..++..-.|+ .|+.+++-+.+.+..+..........|..+.+.+..                  .+..+
T Consensus         3 ~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~   81 (148)
T PF08389_consen    3 FIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP   81 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence            46888889999999888777 677888888777666443333333333333321110                  01223


Q ss_pred             hchHHHhhhhcCch----hHHHHHHHHHHHHHHhhcChhHHhh-hHHHHHHHhh
Q psy14014         90 CLLPPLESLATVEE----TVVRDKAVESLRLISAQHSPHDLEA-HFVPLVQRLA  138 (615)
Q Consensus        90 ~l~~~l~~l~~~~~----~~vr~~a~~~l~~l~~~~~~~~~~~-~~l~~l~~l~  138 (615)
                      .++..+.+.+....    ..+...+++++.....+.+.+.+.+ .+++.+..+.
T Consensus        82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l  135 (148)
T PF08389_consen   82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL  135 (148)
T ss_dssp             HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc
Confidence            33444444333221    5666666667766666666554433 2555554444

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG2005|consensus

Probab=89.90  E-value=26  Score=36.85  Aligned_cols=295  Identities=16%  Similarity=0.100  Sum_probs=0.0

Q ss_pred             CCCCCCCCcchHHHHH-HHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCC
Q psy14014          4 SDSAPDDSLYPIAVLI-DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPN   81 (615)
Q Consensus         4 ~~~~~~~~~~~i~~ll-~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~   81 (615)
                      +++...+.-.|.-.+| +.+++++...|..++-.|+..--....|.....|.|.+..  .+.. +|...++-.||.+.=.
T Consensus       442 ~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d--~~~~~ev~~~aslsLG~IfvG  519 (878)
T KOG2005|consen  442 SNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFD--TKSPMEVVAFASLSLGMIFVG  519 (878)
T ss_pred             eccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcC--CCCchhHHHHHHhhcceeEEe


Q ss_pred             CCCcchhhhchHHHhhhhcCc--hhHHHHHHHH-HHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhcc
Q psy14014         82 VGGPEYVHCLLPPLESLATVE--ETVVRDKAVE-SLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (615)
Q Consensus        82 ~~~~~~~~~l~~~l~~l~~~~--~~~vr~~a~~-~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~  158 (615)
                      .+..+....++..+..=-..+  ++..|-.++- ++-.+.+.-..+.....+..+=..+.         ..+.++-..|.
T Consensus       520 scn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~---------~~~~~lv~~ca  590 (878)
T KOG2005|consen  520 SCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIR---------KHESILVKSCA  590 (878)
T ss_pred             cCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHH---------HHHHHHHHHhh


Q ss_pred             CCChhhHHHH--HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q psy14014        159 RVTAGVKAEL--RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  236 (615)
Q Consensus       159 ~~~~~~~~~l--~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~  236 (615)
                      +.+.--...+  ...+...-.+....-...-.-.||--.-..+.+...+..+-.|-.++.-.++.+|++.--+++-++..
T Consensus       591 YaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvS  670 (878)
T KOG2005|consen  591 YAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS  670 (878)
T ss_pred             ccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC


Q ss_pred             cChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14014        237 LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       237 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  313 (615)
                      -|.-.    ++..+.++..|.+..|-..++-++|-++....+.-...-+-.......+|.+.----..++.|..+.+
T Consensus       671 NPq~~----vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGK  743 (878)
T KOG2005|consen  671 NPQVN----VLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGK  743 (878)
T ss_pred             CCcch----HHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=89.86  E-value=1.2  Score=33.97  Aligned_cols=69  Identities=16%  Similarity=0.338  Sum_probs=49.3

Q ss_pred             cCCchHHHHHHHHhHHHHhhhChH--hHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHhChHHhhhchhHHH
Q psy14014        439 DSKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNALCMTWLVDH--VYAIREAATLNLKKLVEQFGSEWAQSTVIPKV  511 (615)
Q Consensus       439 ~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l  511 (615)
                      +..|.+|+.++..+..++..++..  ...+.+...+.+.+.|+  +...+-.|+..+..+    |++....-++|.+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l   89 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL   89 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence            568999999999999999999864  25567777777777765  455666677766665    5554444566654

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=89.57  E-value=26  Score=35.61  Aligned_cols=253  Identities=11%  Similarity=0.082  Sum_probs=136.4

Q ss_pred             hCCCCHHHHHHHHHHHHhhchhhcchh----hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh--HHHHHHHHH
Q psy14014        336 VADPNQHVKSALASVIMGLSPILGKHN----TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ--QWRVRLAII  409 (615)
Q Consensus       336 ~~d~~~~vR~~~~~~l~~l~~~~g~~~----~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~i~  409 (615)
                      ..+++|.--..+.+.+..+.+....+.    +...++-.++.++..+++.-|......+..+...+...  ..++..   
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i---  175 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSI---  175 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHH---
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---
Confidence            456677766666666666655443332    34466777888888899999998888887765433211  111110   


Q ss_pred             hhhhhhhhccccchhhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchH-HH
Q psy14014        410 EYMPLLAGQLGVEFFDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYA-IR  484 (615)
Q Consensus       410 ~~l~~l~~~~~~~~~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~-vR  484 (615)
                                         . ..+.+... ......-..+++.++.+...+..   +.....+...++.+...+... .-
T Consensus       176 -------------------~-~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~  235 (409)
T PF01603_consen  176 -------------------N-NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYH  235 (409)
T ss_dssp             -------------------H-HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTH
T ss_pred             -------------------H-HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHH
Confidence                               0 12222222 23333444566677777665542   222333334444444443322 23


Q ss_pred             HHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHH---hhHHHHHhhCCCCCchH
Q psy14014        485 EAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTAN---FLLPTVLNMAGDNVANV  561 (615)
Q Consensus       485 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~~~~D~~~~v  561 (615)
                      ..-..++..++.. .+. ....++..++..-=-.++......+.-++.+.+.+++..+..   .+...+.++++.+...|
T Consensus       236 ~~L~~~~~~f~~k-dp~-l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV  313 (409)
T PF01603_consen  236 QQLSYCVVQFLEK-DPS-LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV  313 (409)
T ss_dssp             HHHHHHHHHHHHH--GG-GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred             HHHHHHHHHHHHh-Cch-hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            3334444444432 111 223355555554445566666777788888888888776654   45666667788889888


Q ss_pred             HHHHHHHHH--HHhHhhh--hhhHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHhh
Q psy14014        562 RFNVAKTLQ--KIGPILE--TNVIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       562 r~~a~~~l~--~l~~~~~--~~~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~~  613 (615)
                      -..|+..+.  .+...+.  .....+.+.+.+.+.. +.=+..||..|..+++.+.+
T Consensus       314 AErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  314 AERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            777776663  2233322  2344566666666643 44488999999999988754

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=89.20  E-value=1.9  Score=36.90  Aligned_cols=131  Identities=14%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC--
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA--  337 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~--  337 (615)
                      .+|..+.-++.++....+.+ ..+.+-..+...+.+.+.+-...++.++..+....+.-...-...+.+++.+..++.  
T Consensus        20 ~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~   98 (157)
T PF11701_consen   20 EVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRK   98 (157)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-C
T ss_pred             hHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcc
Confidence            35555555555543222211 123344444445544444444556666665554332221111123456666666666  


Q ss_pred             CCCHHHHHHHHHHHHhhchhh-cchhhhhhhHHHHHHhhc-CCChh-HHHHHHHhhh
Q psy14014        338 DPNQHVKSALASVIMGLSPIL-GKHNTVDHLLPLFLSQLK-DECPE-VRLNIISNLD  391 (615)
Q Consensus       338 d~~~~vR~~~~~~l~~l~~~~-g~~~~~~~l~p~l~~~l~-d~~~~-vr~~a~~~l~  391 (615)
                      ..+..+..++++.+..-+..- ......++..+++.+.++ ++++. +|..|+-.|.
T Consensus        99 ~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   99 SKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             TS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            677888888888886654321 223445677888999885 44555 7776665443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0889|consensus

Probab=89.17  E-value=78  Score=40.60  Aligned_cols=116  Identities=15%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhh---hHhhhHHHHHHhhccCchhHHH----HHHHHHHH----
Q psy14014        164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRL----LAVEACVS----  232 (615)
Q Consensus       164 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~d~~~~vr~----~a~~~l~~----  232 (615)
                      +..++++.+.++|.|+.|.-|...+..++.+....+...   ...+++..+...++|-..++-.    .+..++..    
T Consensus      1030 i~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~ 1109 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRV 1109 (3550)
T ss_pred             hHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHH
Confidence            457788888999999999999998888888877766321   2334555555555554332222    22222222    


Q ss_pred             HHhhcChh----hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc
Q psy14014        233 IASLLSQS----DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE  279 (615)
Q Consensus       233 l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~  279 (615)
                      +......+    .....++..+...+.+|+..||..+.+.|..++...+..
T Consensus      1110 ~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1110 IFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKS 1160 (3550)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCc
Confidence            21111111    112234445555567788899999999999999888665

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=88.98  E-value=21  Score=34.85  Aligned_cols=135  Identities=11%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             HHHHHHHHhHHHHhhhC-hHhHHHHHHHHHHHh-cC---CcchHHHH-HHHHHHHHHHHHhChH------HhhhchhHHH
Q psy14014        444 VRLAIIEYMPLLAGQLG-VEFFDEKLNALCMTW-LV---DHVYAIRE-AATLNLKKLVEQFGSE------WAQSTVIPKV  511 (615)
Q Consensus       444 vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~-l~---d~~~~vR~-~a~~~l~~l~~~~~~~------~~~~~i~~~l  511 (615)
                      +|...+..+..+.+... .+.....++|.+++. +.   +..+..|+ ..+.++..++..++..      ...+.+....
T Consensus        43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T  122 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT  122 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            56667777777766554 333445566655552 22   23333333 2345556666665542      1223444455


Q ss_pred             HhhhcC---CCchHHHHHHHHHHHHHhhhChhhH------HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh
Q psy14014        512 VAMSRD---QNYLHRMTCLFCINVLAEACGPTVT------ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET  578 (615)
Q Consensus       512 ~~~~~d---~~~~~R~~a~~~l~~l~~~~~~~~~------~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~  578 (615)
                      +.+..+   .-|..|......+..+.+.+.+...      -..++..+.-..+..+++|...++.++..+......
T Consensus       123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            555544   3578999999999999887654432      134556666678999999999999999999876643

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=88.90  E-value=0.68  Score=29.18  Aligned_cols=25  Identities=36%  Similarity=0.389  Sum_probs=17.3

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHH
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANK  307 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~  307 (615)
                      +.+...+...+.|+.+.||.+|+..
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4566677777777777777776653

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=88.49  E-value=18  Score=32.34  Aligned_cols=36  Identities=17%  Similarity=0.096  Sum_probs=25.0

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHH
Q psy14014        367 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQW  402 (615)
Q Consensus       367 l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  402 (615)
                      ++..+.++-.+++-..|..+-.+++..++.+|.+.+
T Consensus        42 ~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~v   77 (198)
T PF08161_consen   42 ILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQV   77 (198)
T ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHH
Confidence            333444444555667888888889988888887644

>KOG2022|consensus

Probab=88.35  E-value=43  Score=36.59  Aligned_cols=179  Identities=12%  Similarity=0.071  Sum_probs=109.2

Q ss_pred             HHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCc-----hhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHh----
Q psy14014        183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ-----DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC----  253 (615)
Q Consensus       183 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~----  253 (615)
                      -|+...+.+......++ +...+.+...+-+++.|.+     +..-++++..+..++++++...  ...+|-+.+.    
T Consensus       440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi  516 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI  516 (982)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence            34444444444444344 2334455555666666555     5667888999999999998753  1223433332    


Q ss_pred             -cCCCChHHHHHHHHHHHHHHHHhCccc-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014        254 -SGDTSWRVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY  331 (615)
Q Consensus       254 -~~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~  331 (615)
                       .+-+++..-.++...+|..+..++++. ..+--+|++.+.+..+..  -..++..+..+++.++.+-.  .+...++..
T Consensus       517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~--py~d~~~a~  592 (982)
T KOG2022|consen  517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLD--PYADQFSAV  592 (982)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCc--hHHHHHHHH
Confidence             233467778888899999999888764 345677888888864443  34567778888887654322  233444444


Q ss_pred             HHHhhCC--CCHHHHHHHHHHHHhhchhhcchhhhhhhH
Q psy14014        332 VKDLVAD--PNQHVKSALASVIMGLSPILGKHNTVDHLL  368 (615)
Q Consensus       332 l~~~~~d--~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~  368 (615)
                      ..+.++.  .....|..+..++|.+......+...++++
T Consensus       593 ~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~  631 (982)
T KOG2022|consen  593 CYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLM  631 (982)
T ss_pred             HHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHH
Confidence            4444443  345678888888888877666544333333

>KOG4500|consensus

Probab=88.28  E-value=29  Score=34.50  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc--chhHHHHHhhHHHHHH-hhCCCCHHHHHHHHHHHHhhch-hh
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY--NQENIIMTYILPYVKD-LVADPNQHVKSALASVIMGLSP-IL  358 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~~l~p~l~~-~~~d~~~~vR~~~~~~l~~l~~-~~  358 (615)
                      ++++..+...+...+.+....+.-+++.|+..-..-  .-++.+++.++..+.+ -..|.+-+++.+++.++..+.- +.
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            357777788888888899999999999988742211  1112344555555544 3456677788899999987753 33


Q ss_pred             cchhhhh-hhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        359 GKHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       359 g~~~~~~-~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                      .+..+.+ -+...++.+++-..+.|....+.++..+
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~  429 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMI  429 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            3333322 3555677778777888877766655443

>KOG2973|consensus

Probab=88.21  E-value=24  Score=33.42  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=62.6

Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhchh---hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhHHHhHH
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDVEQLVM  247 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~  247 (615)
                      +..++.+.+|.||+.+++.+..+... +-.   ......++-+.++.+|..+  -+.|..++.+++..-.- +.....++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~   84 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL   84 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35667889999999999877776554 211   1234577888889988877  44555666665543211 11122233


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy14014        248 PTLRQCSGDTSWRVRYMVADKFTDLQK  274 (615)
Q Consensus       248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~  274 (615)
                      ..+...+.|+.|..-...+..+.++++
T Consensus        85 k~l~~~~~~p~~~lad~~cmlL~NLs~  111 (353)
T KOG2973|consen   85 KVLMDMLTDPQSPLADLICMLLSNLSR  111 (353)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence            344445678878777777777777664

>KOG1048|consensus

Probab=87.85  E-value=43  Score=36.01  Aligned_cols=146  Identities=10%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh-------HH-hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhh
Q psy14014        466 EKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS-------EW-AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       466 ~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~-------~~-~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~  536 (615)
                      +.++...+.++. ..+..+-++++.+|..+....+.       .. .++..+|.+.+++..++..+-..++.++.+++..
T Consensus       517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence            456655555554 34667788888888888764332       11 3456889999999999999999999999999865


Q ss_pred             hChh-hHHHhhHHHHHhhCCCCCc------hHHHHHHHHHHHHhHh-hh-h-hhHHh-hHHHHHhhhcCCCCccHHHHHH
Q psy14014        537 CGPT-VTANFLLPTVLNMAGDNVA------NVRFNVAKTLQKIGPI-LE-T-NVIQS-QVKPALDKLNGDTDVDVKYFAQ  605 (615)
Q Consensus       537 ~~~~-~~~~~i~~~l~~~~~D~~~------~vr~~a~~~l~~l~~~-~~-~-~~~~~-~~~~~l~~l~~d~d~~v~~~a~  605 (615)
                      .... ....+.+|-|.+.+-+..+      +.-..++.+|..++.. .. + +.+.. .+..++.-...-..+.+-.+|.
T Consensus       597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs  676 (717)
T KOG1048|consen  597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS  676 (717)
T ss_pred             chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence            4433 3346788888888766554      6677788888888733 21 1 12222 2233222223344556666666


Q ss_pred             HHHHHH
Q psy14014        606 EAISSI  611 (615)
Q Consensus       606 ~a~~~~  611 (615)
                      .-+.++
T Consensus       677 ~vL~~l  682 (717)
T KOG1048|consen  677 SVLDVL  682 (717)
T ss_pred             HHHHHH
Confidence            655554

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=87.53  E-value=16  Score=30.61  Aligned_cols=102  Identities=12%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH-
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK-DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY-  331 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~-  331 (615)
                      +..++|..-..++..+..      ........+-.+.+.+. ..++.|...|+..+..+.++++.....+.....++.. 
T Consensus        14 l~~~dw~~ileicD~In~------~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~   87 (141)
T cd03565          14 LQSEDWGLNMEICDIINE------TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV   87 (141)
T ss_pred             CCCcCHHHHHHHHHHHhC------CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence            445677655544444332      11223467777777776 4688899999999999999998876655555667775 


Q ss_pred             HHHhhCC---CCHHHHHHHHHHHHhhchhhcch
Q psy14014        332 VKDLVAD---PNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       332 l~~~~~d---~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      |.+++.+   ....||.-++..+...+..+..+
T Consensus        88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (141)
T cd03565          88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS  120 (141)
T ss_pred             HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            7777653   44688988888888777766543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG2122|consensus

Probab=87.28  E-value=66  Score=37.58  Aligned_cols=332  Identities=16%  Similarity=0.138  Sum_probs=165.8

Q ss_pred             HhhhHHHHHHhhc---cCchhHHHHHHHHHHHHHhhcChhhH---HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q psy14014        204 KTDIIPMFVNLAQ---DEQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG  277 (615)
Q Consensus       204 ~~~ll~~l~~~~~---d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~  277 (615)
                      ....+|++.+++-   +++.+.|+.|-.+|-.++..-+++..   ...+++++.+.        |..+-.+ ......-+
T Consensus       233 ~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI--------raYC~~~-~~~lqar~  303 (2195)
T KOG2122|consen  233 RSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI--------RAYCETC-WTWLQARG  303 (2195)
T ss_pred             hccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH--------HHHHHHH-HHHHHhcC
Confidence            4567788777763   44778999999999888776665432   22344444322        2222111 11111111


Q ss_pred             ----ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHH----hhCCC-CHHHHHHHH
Q psy14014        278 ----PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKD----LVADP-NQHVKSALA  348 (615)
Q Consensus       278 ----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~----~~~d~-~~~vR~~~~  348 (615)
                          +.-....|.+.+..+++-.+.|-...|+.-|+.+-.           +..++..-..    ..+|. .-.+|+-+.
T Consensus       304 ~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqA-----------IaeLl~vDh~mhgp~tnd~~~~aLRrYa~  372 (2195)
T KOG2122|consen  304 PAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQA-----------IAELLQVDHEMHGPETNDGECNALRRYAG  372 (2195)
T ss_pred             CCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHH-----------HHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence                111122444555555555544433333333332211           0111111111    11221 346788888


Q ss_pred             HHHHhhchhhcchh----h--hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccc
Q psy14014        349 SVIMGLSPILGKHN----T--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVE  422 (615)
Q Consensus       349 ~~l~~l~~~~g~~~----~--~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~  422 (615)
                      .+|.+|.  +|...    +  ...++..++..|....+++.+-....|-.+       .|+-....-+++..    .|  
T Consensus       373 MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNL-------SWRAD~nmKkvLrE----~G--  437 (2195)
T KOG2122|consen  373 MALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNL-------SWRADSNMKKVLRE----TG--  437 (2195)
T ss_pred             HHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhc-------cccccccHHHHHHh----hh--
Confidence            8888773  34321    1  235677777776655444443333322222       12211100000100    00  


Q ss_pred             hhhhhhhhHHH-HHhhhcCCchHHHHHHHHhHHHHhhhCh---HhH-HHHHHHHHHHhcC----CcchHHHHHHHHHHHH
Q psy14014        423 FFDEKLNALSI-VELAEDSKWRVRLAIIEYMPLLAGQLGV---EFF-DEKLNALCMTWLV----DHVYAIREAATLNLKK  493 (615)
Q Consensus       423 ~~~~~l~~~~i-~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~~l~----d~~~~vR~~a~~~l~~  493 (615)
                            ....+ .-.++..+...-.+.+.+|..+......   ++. .+..+.+|..+|.    .....+-+.|-..|..
T Consensus       438 ------sVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN  511 (2195)
T KOG2122|consen  438 ------SVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN  511 (2195)
T ss_pred             ------hHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence                  00011 1122333333444555555555433321   111 1233344444442    2233444555555555


Q ss_pred             HHHHhC---hH--H-hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh---HHHhhHHHHHhhCCCCCchHHHH
Q psy14014        494 LVEQFG---SE--W-AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV---TANFLLPTVLNMAGDNVANVRFN  564 (615)
Q Consensus       494 l~~~~~---~~--~-~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~~~~vr~~  564 (615)
                      +...+.   +.  . .....+..|++.+++.+..+--++|.+|-++.-....+-   +.....+.|.+++..++..+-..
T Consensus       512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~G  591 (2195)
T KOG2122|consen  512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMG  591 (2195)
T ss_pred             HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhh
Confidence            544432   21  0 113467888888999988888889999999875544332   34567899999999999999999


Q ss_pred             HHHHHHHHhHhh
Q psy14014        565 VAKTLQKIGPIL  576 (615)
Q Consensus       565 a~~~l~~l~~~~  576 (615)
                      ++.+|.++..+-
T Consensus       592 SaaALrNLln~R  603 (2195)
T KOG2122|consen  592 SAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHHhcCC
Confidence            999999987653

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=86.99  E-value=15  Score=30.38  Aligned_cols=97  Identities=8%  Similarity=-0.024  Sum_probs=64.9

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH---H-hHHHHHHH
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---Q-LVMPTLRQ  252 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~-~l~~~l~~  252 (615)
                      .+++|..-...|+.+..-      +....+.+..+...++++++.++..|+..+..+..+.|..-..   . ..+.-+..
T Consensus        14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            456665555555444322      1123456777788888899999999999999999998873211   1 22333555


Q ss_pred             hcCC---CChHHHHHHHHHHHHHHHHhCcc
Q psy14014        253 CSGD---TSWRVRYMVADKFTDLQKAVGPE  279 (615)
Q Consensus       253 ~~~d---~~~~vR~~~~~~l~~l~~~~~~~  279 (615)
                      ++..   .+..||..+.+.+...+..++.+
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~  117 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFGGH  117 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5543   47789999999998888887764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF05536 Neurochondrin: Neurochondrin

Probab=86.73  E-value=46  Score=35.22  Aligned_cols=179  Identities=11%  Similarity=0.104  Sum_probs=109.4

Q ss_pred             ChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhccCch-hHHHHHHHHHHHHHhhcCh-hh-HHHhHHHHHHH
Q psy14014        180 TPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQDEQD-SVRLLAVEACVSIASLLSQ-SD-VEQLVMPTLRQ  252 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~  252 (615)
                      ....+.-++..+..++.  .+    +...-.-+|.+.+.+..... ++-..|+++|..++..-.. +. .....++.+.+
T Consensus        70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e  147 (543)
T PF05536_consen   70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE  147 (543)
T ss_pred             HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence            34556666667777765  22    12234567888888877666 8888899999988843222 11 12235666666


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCccch------hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc----chhH
Q psy14014        253 CSGDTSWRVRYMVADKFTDLQKAVGPEIT------KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY----NQEN  322 (615)
Q Consensus       253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~  322 (615)
                      ...+ +......+...+..+....+.+..      ...+++.+...+......-+-..+..|..+....+..    ....
T Consensus       148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~  226 (543)
T PF05536_consen  148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP  226 (543)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence            6555 555677777777777665553211      1234555555555555555666777777777765311    1223


Q ss_pred             HHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchhhcch
Q psy14014        323 IIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      .+...+...+..++++ ..+.-|..+......+.+.+|.+
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence            4556667777776665 45677777877777777777753

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=86.54  E-value=0.87  Score=28.70  Aligned_cols=25  Identities=12%  Similarity=0.141  Sum_probs=14.5

Q ss_pred             HhhHHHHHhhCCCCCchHHHHHHHH
Q psy14014        544 NFLLPTVLNMAGDNVANVRFNVAKT  568 (615)
Q Consensus       544 ~~i~~~l~~~~~D~~~~vr~~a~~~  568 (615)
                      +.+...+.+.+.|+.+.||.++...
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            3455555666666666666665543

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=86.44  E-value=5.8  Score=29.79  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHH-hCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHH
Q psy14014        164 VKAELRSHFRNL-CQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACV  231 (615)
Q Consensus       164 ~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~  231 (615)
                      .++.++.-|..+ ....+.+||...++++..+....+.  ...|..++.++....+|++..+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            445555545554 4557889999999999999886654  2347788999988888888888888877764

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>KOG1851|consensus

Probab=86.31  E-value=76  Score=37.30  Aligned_cols=138  Identities=19%  Similarity=0.233  Sum_probs=89.2

Q ss_pred             hhcCCchHHHHHHHHhHHHH--hhhC-hHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh
Q psy14014        437 AEDSKWRVRLAIIEYMPLLA--GQLG-VEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA  513 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  513 (615)
                      ..+..|++|.+.+..+..+.  ..++ .+.-.+.+.-.+...+.|...+||+.|+.++..+...-... +..........
T Consensus      1536 ~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~-~~~~k~d~~~~ 1614 (1710)
T KOG1851|consen 1536 ADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ-FVSDKRDTTSN 1614 (1710)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc-cchHhhhhhhh
Confidence            35679999999998887764  2333 22334678888899999999999999999999987642111 11112222222


Q ss_pred             h--hcCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014        514 M--SRDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       514 ~--~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~  576 (615)
                      .  ....+...+-.++.++|.++-.++...  +.+..+..+.....|+ ..++..+.++++......
T Consensus      1615 ~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1615 ILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             hhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            1  223344455677888999886655432  3334444455555666 678889999998876554

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=86.01  E-value=40  Score=33.77  Aligned_cols=68  Identities=10%  Similarity=0.116  Sum_probs=42.7

Q ss_pred             HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh------hhHHhhHHHHHhhhcCCCCc----cHHHHHHHHHH
Q psy14014        542 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET------NVIQSQVKPALDKLNGDTDV----DVKYFAQEAIS  609 (615)
Q Consensus       542 ~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~l~~d~d~----~v~~~a~~a~~  609 (615)
                      +.+..+.....+.+++++.+|..|..++..++-....      +...--..|+...+......    +++..+...+.
T Consensus       271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~  348 (372)
T PF12231_consen  271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLC  348 (372)
T ss_pred             hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHh
Confidence            3456677777788888888888888888888764431      22233345555555444444    66666655544

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.89  E-value=19  Score=29.97  Aligned_cols=96  Identities=8%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh----hchhHHHH
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ----STVIPKVV  512 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  512 (615)
                      +..++|..-..+++.+..  +.-|+    ...+..+.+.+++++..+...|+..+..+.+++|..+..    ..++..+.
T Consensus        14 l~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            345777655555554432  11122    234555777788999999999999999999999986532    44667777


Q ss_pred             hhhcC------CCchHHHHHHHHHHHHHhhhC
Q psy14014        513 AMSRD------QNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       513 ~~~~d------~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      .++..      .+..||...+..+......++
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            76643      466788888887777776553

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2081|consensus

Probab=85.76  E-value=46  Score=34.31  Aligned_cols=146  Identities=14%  Similarity=0.163  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhCCC---ChHHHHHHHHhHHHHHH--HhchhhhHh--hhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        167 ELRSHFRNLCQDD---TPMVRRAAAGKLGELAK--VVEVDYLKT--DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       167 ~l~~~l~~l~~d~---~~~vR~~a~~~l~~l~~--~~~~~~~~~--~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      .++..+..++++.   +..+=..+.++++...+  .++++....  .++......++  .......|.+++..+....-.
T Consensus       153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~  230 (559)
T KOG2081|consen  153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLD  230 (559)
T ss_pred             HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhh
Confidence            3444555555543   24555667777777766  333332221  34555555555  445666677766655433221


Q ss_pred             -hh---HHH------hHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCccch--hhh---HHHHHHHhhcCCcHHHHHH
Q psy14014        240 -SD---VEQ------LVMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTD---LVQAFQMLLKDSEAEVRAA  303 (615)
Q Consensus       240 -~~---~~~------~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~---l~~~l~~~l~d~~~~vr~~  303 (615)
                       +.   +.+      .++|.... .....+..-+++.+..|..+++.+-....  .+.   ++..++-...+++.+|-+.
T Consensus       231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~  310 (559)
T KOG2081|consen  231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA  310 (559)
T ss_pred             hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence             11   111      12222222 22334555777788888877765432211  122   3344455556777777766


Q ss_pred             HHHHHHHHHhh
Q psy14014        304 AANKVRDFCQN  314 (615)
Q Consensus       304 a~~~l~~~~~~  314 (615)
                      .....-.+.+.
T Consensus       311 SF~fW~~lse~  321 (559)
T KOG2081|consen  311 SFNFWYSLSEE  321 (559)
T ss_pred             hHHhhhhhHHH
Confidence            66555555443

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=85.65  E-value=27  Score=31.54  Aligned_cols=133  Identities=11%  Similarity=0.137  Sum_probs=86.7

Q ss_pred             hhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC-CChHHHHHHHHH-HHHHHHHhCccchhh
Q psy14014        206 DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD-TSWRVRYMVADK-FTDLQKAVGPEITKT  283 (615)
Q Consensus       206 ~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~-l~~l~~~~~~~~~~~  283 (615)
                      ........+.+++..+.|..|+..+...-.....+     -++.+...+.+ .+|.+-...+.. +|.+...      .+
T Consensus        46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~  114 (208)
T cd07064          46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YP  114 (208)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Ch
Confidence            44555666777788889999888877755444433     24444445544 456654443332 3333221      23


Q ss_pred             hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        284 DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       284 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      .+.+.+.....+++.-+|..|+-+.-.+.+...        .+.+...+..++.|++.-|+.++.++|..++..
T Consensus       115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--------~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTD--------TDLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            556788888999998888888876544444211        244566677789999999999999999887653

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=85.46  E-value=11  Score=29.74  Aligned_cols=61  Identities=11%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             CchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhH
Q psy14014        519 NYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI  581 (615)
Q Consensus       519 ~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~  581 (615)
                      ....|..++.+++.+.+..++..  +.+++...|...+.  .++.|..+.+++..++..++.+..
T Consensus        28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l   90 (107)
T smart00802       28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEEL   90 (107)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHH
Confidence            34568899999999998766533  34566666666665  556999999999999998876544

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=85.10  E-value=39  Score=32.92  Aligned_cols=136  Identities=11%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             HHHHHHHHhHHHHHHHhch-hhhHhhhHHHHHH-hh---ccCchhHHHH-HHHHHHHHHhhcChh------hHHHhHHHH
Q psy14014        182 MVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVN-LA---QDEQDSVRLL-AVEACVSIASLLSQS------DVEQLVMPT  249 (615)
Q Consensus       182 ~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~-~~---~d~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~  249 (615)
                      .+|+..++.+..+.+..++ +.....++|.+.. .+   ++..+..|.. .+..+..++..++..      .+...++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4555666666655554442 2223334433332 22   3344555542 233444555544431      222233333


Q ss_pred             HHHhcC-C--CChHHHHHHHHHHHHHHHHhCccc------hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        250 LRQCSG-D--TSWRVRYMVADKFTDLQKAVGPEI------TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       250 l~~~~~-d--~~~~vR~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                      ....+. |  .-+..|....+.+..+....-...      .-..++..+...+++++.+|-..++.++..+...+..
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            333333 2  247899999988888876543211      1235667778888999999999999999999887654

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG4500|consensus

Probab=85.07  E-value=43  Score=33.34  Aligned_cols=143  Identities=9%  Similarity=0.006  Sum_probs=86.6

Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--HhHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHhChH--
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNALCMTWL-----VDHVYAIREAATLNLKKLVEQFGSE--  501 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-----~d~~~~vR~~a~~~l~~l~~~~~~~--  501 (615)
                      ..+..|+.+.+......+.-+++.++..=..  .+....++..++..+     .|.+..+..+++.++..+.--....  
T Consensus       318 ~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~  397 (604)
T KOG4500|consen  318 DFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAH  397 (604)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhh
Confidence            3566778888888888888889988764322  233344555555443     4678888899999998886433221  


Q ss_pred             HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH------HHhhHHHHHhhCCCCCch-HHHHHHHHHHHHhH
Q psy14014        502 WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT------ANFLLPTVLNMAGDNVAN-VRFNVAKTLQKIGP  574 (615)
Q Consensus       502 ~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~------~~~i~~~l~~~~~D~~~~-vr~~a~~~l~~l~~  574 (615)
                      +..--+...++.+++...|++....+.++.-+...-  ++.      ....+..|..-.+.+|.. |-....+.+..+++
T Consensus       398 ~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q--e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk  475 (604)
T KOG4500|consen  398 FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ--EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK  475 (604)
T ss_pred             ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch--HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH
Confidence            222235556777777777777666555555443221  111      123344445555666665 77777777776665


Q ss_pred             h
Q psy14014        575 I  575 (615)
Q Consensus       575 ~  575 (615)
                      +
T Consensus       476 H  476 (604)
T KOG4500|consen  476 H  476 (604)
T ss_pred             h
Confidence            5

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=84.91  E-value=22  Score=29.80  Aligned_cols=109  Identities=11%  Similarity=0.014  Sum_probs=70.7

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHH
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQ  252 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  252 (615)
                      .+++|..-..+|+.+..-      +....+.+-.+.+.+++.++.+...|+..+..+.++.|..-.    ...++..+.+
T Consensus        18 ~~~dw~~ileicD~In~~------~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~   91 (142)
T cd03569          18 GEPDLASILEICDMIRSK------DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD   91 (142)
T ss_pred             CccCHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            455665555555544321      112345666777778889999999999999999999886322    2235555555


Q ss_pred             hcC-CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHH
Q psy14014        253 CSG-DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQM  291 (615)
Q Consensus       253 ~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  291 (615)
                      ++. .++..||..++..+...+..++.+.....+...+..
T Consensus        92 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~  131 (142)
T cd03569          92 LIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQI  131 (142)
T ss_pred             HHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence            554 567889999999888888887765433344444433

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=84.90  E-value=28  Score=31.03  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014        209 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA  275 (615)
Q Consensus       209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~  275 (615)
                      +.+.....+++..+|+++...+......   +.....+++.+.....|++..||.+.+.+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            7788888899999999888777665544   233556788888888889999999999998888765

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=84.88  E-value=17  Score=33.96  Aligned_cols=133  Identities=10%  Similarity=0.138  Sum_probs=69.3

Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc------HHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE------AEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      +++..+...|.++..++..       +-...+++|+|+..+.++-      -++-.........++.+  +....+.+..
T Consensus       206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N--~~iFvdPY~h  276 (450)
T COG5095         206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKN--KYIFVDPYLH  276 (450)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC--CceeecHHHH
Confidence            3445567778887776654       2224578888887775532      11111111111112211  1111124566


Q ss_pred             hhHHHHHHhh------CCC----CHHHHHHHHHHHHhhchhhcchh--hhhhhHHHHHHhhcC--CChhHHHHHHHhhhH
Q psy14014        327 YILPYVKDLV------ADP----NQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKD--ECPEVRLNIISNLDC  392 (615)
Q Consensus       327 ~l~p~l~~~~------~d~----~~~vR~~~~~~l~~l~~~~g~~~--~~~~l~p~l~~~l~d--~~~~vr~~a~~~l~~  392 (615)
                      +++|.+..++      +++    ...+|..++..++.++..++...  ..+.+...+.+..-|  .-.....+|+++++.
T Consensus       277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~  356 (450)
T COG5095         277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSI  356 (450)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            6777665432      332    35689999999888887776532  222333333333223  234567788877765


Q ss_pred             hh
Q psy14014        393 VN  394 (615)
Q Consensus       393 l~  394 (615)
                      +.
T Consensus       357 l~  358 (450)
T COG5095         357 LS  358 (450)
T ss_pred             hc
Confidence            53

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=83.73  E-value=46  Score=32.60  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=75.6

Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHhC---hHHhh---hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hh--
Q psy14014        471 LCMTWLVDHVYAIREAATLNLKKLVEQFG---SEWAQ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TV--  541 (615)
Q Consensus       471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~---~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~--  541 (615)
                      .+++....++.++-..|..++..+.....   .++..   +.+......++.++|+.+|.-+++.||.+...-.. ..  
T Consensus       168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~  247 (335)
T PF08569_consen  168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT  247 (335)
T ss_dssp             GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence            36777888999999999999988876422   22221   34666777889999999999999999999743211 11  


Q ss_pred             --H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        542 --T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       542 --~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                        + .+.-+..+..++.|+..++|..|...+..++..
T Consensus       248 ~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  248 RYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence              1 245677888899999999999999999888754

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05536 Neurochondrin: Neurochondrin

Probab=82.87  E-value=69  Score=33.96  Aligned_cols=178  Identities=11%  Similarity=0.165  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHH--HhCccchhhhHHHHHHHhhcCCcH-HHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh
Q psy14014        260 RVRYMVADKFTDLQK--AVGPEITKTDLVQAFQMLLKDSEA-EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV  336 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~  336 (615)
                      ..+.-+...++.++.  ....+...-.-+|.+...+..... ++...+...|..++.  .++..........+|.+.+.+
T Consensus        72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~~aLl~~g~v~~L~ei~  149 (543)
T PF05536_consen   72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGAKALLESGAVPALCEII  149 (543)
T ss_pred             HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhHHHHHhcCCHHHHHHHH
Confidence            344445555555553  111112233568888888877666 888888888888884  233333334445667777666


Q ss_pred             CCCCHHHHHHHHHHHHhhchhhcchhh------hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhc--------hhHH
Q psy14014        337 ADPNQHVKSALASVIMGLSPILGKHNT------VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG--------IQQW  402 (615)
Q Consensus       337 ~d~~~~vR~~~~~~l~~l~~~~g~~~~------~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~  402 (615)
                      .+ ++..+..+...+..+....+.+..      ...+++.+..........-+..++..|..+....+        ...|
T Consensus       150 ~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W  228 (543)
T PF05536_consen  150 PN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKW  228 (543)
T ss_pred             Hh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhh
Confidence            65 566677777777766655553221      22344445544444444555555655555543221        1112


Q ss_pred             HHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh
Q psy14014        403 RVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF  463 (615)
Q Consensus       403 ~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~  463 (615)
                      ...+                      . .-+..++++ ....-|..++.....+.+.+|.++
T Consensus       229 ~~~l----------------------~-~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w  267 (543)
T PF05536_consen  229 LSDL----------------------R-KGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW  267 (543)
T ss_pred             HHHH----------------------H-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence            2111                      1 234444444 356678888888888888888765

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=82.25  E-value=1.8  Score=24.77  Aligned_cols=29  Identities=28%  Similarity=0.163  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC
Q psy14014        259 WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD  295 (615)
Q Consensus       259 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  295 (615)
                      |.||..++.+|+.+..        +..++.+.+.++|
T Consensus         1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d   29 (30)
T smart00567        1 PLVRHEAAFALGQLGD--------EEAVPALIKALED   29 (30)
T ss_pred             CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence            5678888888887632        4566667766665

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG0891|consensus

Probab=82.16  E-value=1.5e+02  Score=37.35  Aligned_cols=218  Identities=17%  Similarity=0.171  Sum_probs=125.1

Q ss_pred             HHHHHHHHHH-HhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH
Q psy14014        165 KAELRSHFRN-LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  243 (615)
Q Consensus       165 ~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  243 (615)
                      .+.++..+.. ...|.++.+|......+.   +...+....+..+-.....+.|+.-.++.++...++.++..-+     
T Consensus       526 v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----  597 (2341)
T KOG0891|consen  526 VKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----  597 (2341)
T ss_pred             HHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----
Confidence            3344444333 357888888877777665   2222222344555666667778888888888888887665433     


Q ss_pred             HhHHHHHH--------HhcCCCChHHHHHHHHHHHHHHHHhC--ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14014        244 QLVMPTLR--------QCSGDTSWRVRYMVADKFTDLQKAVG--PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       244 ~~l~~~l~--------~~~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  313 (615)
                      .+++|.+.        ++.-+...++....+.-+..+.....  -......++-.+...+.|..+.+-.++..+++.++.
T Consensus       598 a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~  677 (2341)
T KOG0891|consen  598 AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCA  677 (2341)
T ss_pred             HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence            22333332        22222223333333333333222110  011123455666777788888898999999999998


Q ss_pred             hccccchhHHHHHhhHHHHHHhhCCCC-HHHHHHHHHHHHhhchhhcc----hhhhhhhHHHHHHhhcCC-ChhHHHHHH
Q psy14014        314 NLDAYNQENIIMTYILPYVKDLVADPN-QHVKSALASVIMGLSPILGK----HNTVDHLLPLFLSQLKDE-CPEVRLNII  387 (615)
Q Consensus       314 ~~~~~~~~~~~~~~l~p~l~~~~~d~~-~~vR~~~~~~l~~l~~~~g~----~~~~~~l~p~l~~~l~d~-~~~vr~~a~  387 (615)
                      ..+.+..  .+.+.+++.+.+.+.|.+ ..-|.++.++++.+...-|-    ....+.++..+...+..+ ...+|..++
T Consensus       678 v~g~~~~--~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v  755 (2341)
T KOG0891|consen  678 VGGEEMV--KWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAI  755 (2341)
T ss_pred             hccchhh--hccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHH
Confidence            7764432  233466677777666644 45567788888888765442    222345555555555443 456777777


Q ss_pred             HhhhH
Q psy14014        388 SNLDC  392 (615)
Q Consensus       388 ~~l~~  392 (615)
                      +.++.
T Consensus       756 ~~~g~  760 (2341)
T KOG0891|consen  756 RLLGL  760 (2341)
T ss_pred             HHhhh
Confidence            76653

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=81.36  E-value=48  Score=31.15  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHH-HHHHHhhhChh
Q psy14014        467 KLNALCMTWLVDHV-----YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFC-INVLAEACGPT  540 (615)
Q Consensus       467 ~l~~~l~~~l~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~-l~~l~~~~~~~  540 (615)
                      ..+|.+...+.+++     ..++ ..+..+..+++.-|..     =+..+...+....++.+...+.. +..+.+.+.|+
T Consensus       111 a~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~-----~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~  184 (262)
T PF14225_consen  111 ALLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLP-----NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD  184 (262)
T ss_pred             HHHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCc-----cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch
Confidence            35677777666665     3444 4446777777543322     23344444444444545444443 33344444333


Q ss_pred             hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--hhHHhhHHHHHhhhcCCC
Q psy14014        541 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVIQSQVKPALDKLNGDT  596 (615)
Q Consensus       541 ~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~d~  596 (615)
                      . ...++-.+..++..+-+.+|...+..|..+.+..+.  +...+-+.|+++-+.+|-
T Consensus       185 ~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~  241 (262)
T PF14225_consen  185 H-EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDL  241 (262)
T ss_pred             h-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCcc
Confidence            2 334666678888888999999999999999988752  222333555555555544

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=80.92  E-value=39  Score=35.17  Aligned_cols=100  Identities=13%  Similarity=0.017  Sum_probs=55.4

Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhH-
Q psy14014        473 MTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLL-  547 (615)
Q Consensus       473 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~-  547 (615)
                      +....|-...+|..+...++.-+.....-+.....+.+.-.++.|.+..+|....+.+-.+....+...    +.+... 
T Consensus       281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~  360 (740)
T COG5537         281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD  360 (740)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            344556666677777666666665544433333344444456667777777777777766665543322    122222 


Q ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        548 PTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       548 ~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      -+|.-+..|.+- ||.++.+.+..+.
T Consensus       361 rILE~~r~D~d~-VRi~sik~l~~lr  385 (740)
T COG5537         361 RILEFLRTDSDC-VRICSIKSLCYLR  385 (740)
T ss_pred             HHHHHHhhccch-hhHHHHHHHHHHH
Confidence            222233456666 7777777776654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=80.55  E-value=49  Score=30.72  Aligned_cols=67  Identities=10%  Similarity=0.103  Sum_probs=34.9

Q ss_pred             hhHHHHHHHhhcCC-CcchhhhHHhhhhhhccCCChhhH-----HHHHHHHHHHhCCCChHHHHHHHHhHHHH
Q psy14014        128 AHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVK-----AELRSHFRNLCQDDTPMVRRAAAGKLGEL  194 (615)
Q Consensus       128 ~~~l~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l  194 (615)
                      -++.|++.....+. ....|.++.+.++.+...-+.+..     .+++|.+.+.++..+..-|-.|...+..+
T Consensus        94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35677776555543 345677778888877765444433     34666666666555554444444444443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2122|consensus

Probab=80.54  E-value=1.3e+02  Score=35.50  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH---hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHh
Q psy14014        466 EKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW---AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE  535 (615)
Q Consensus       466 ~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~  535 (615)
                      ..++..+++.|+.....+-..++.+|.+|......+.   +..-.++.|.+++.+.+..+-+.++.++.++..
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            4577888888988888888889999988876643321   123367888899999988888888888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	615
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		0.0
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		0.0
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		0.0
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		0.0
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		0.0
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		0.0
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		0.0
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		3e-83

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)
Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418
Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445
Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498
Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558
Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)
Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418
Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445
Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498
Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558
Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/621 (73%), Positives = 509/621 (81%), Gaps = 57/621 (9%)
Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
           HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248
            KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMP
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
           TLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL 368
           ++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 369 PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEY 411
           PLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
           MPLLAGQLGVEFFDEKLN+                                        L
Sbjct: 426 MPLLAGQLGVEFFDEKLNS----------------------------------------L 445
Query: 472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
           CM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCIN
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505
Query: 532 VLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591
           VL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+K
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565
Query: 592 LNGDTDVDVKYFAQEAISSIA 612
           L  D DVDVKYFAQEA++ ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/621 (73%), Positives = 509/621 (81%), Gaps = 57/621 (9%)
Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
           HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248
            KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMP
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
           TLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL 368
           ++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 369 PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEY 411
           PLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
           MPLLAGQLGVEFFDEKLN+                                        L
Sbjct: 426 MPLLAGQLGVEFFDEKLNS----------------------------------------L 445
Query: 472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
           CM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCIN
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505
Query: 532 VLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591
           VL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+K
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565
Query: 592 LNGDTDVDVKYFAQEAISSIA 612
           L  D DVDVKYFAQEA++ ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/619 (73%), Positives = 507/619 (81%), Gaps = 57/619 (9%)
Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLA
Sbjct: 2   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA 61
Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
           LAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHF
Sbjct: 62  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGK 190
           VPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA K
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 181
Query: 191 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 250
           LGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTL
Sbjct: 182 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 241
Query: 251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRD 310
           RQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV++
Sbjct: 242 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 301
Query: 311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
           FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLLPL
Sbjct: 302 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 361
Query: 371 FLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYMP 413
           FL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEYMP
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 421
Query: 414 LLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM 473
           LLAGQLGVEFFDEKLN+                                        LCM
Sbjct: 422 LLAGQLGVEFFDEKLNS----------------------------------------LCM 441
Query: 474 TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVL 533
            WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL
Sbjct: 442 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 501
Query: 534 AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 593
           +E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL 
Sbjct: 502 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 561
Query: 594 GDTDVDVKYFAQEAISSIA 612
            D DVDVKYFAQEA++ ++
Sbjct: 562 QDQDVDVKYFAQEALTVLS 580

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/618 (73%), Positives = 506/618 (81%), Gaps = 57/618 (9%)
Query: 12  LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLAL 71
           LYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLAL
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 72  AEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
           AEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHFV
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKL 191
           PLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA KL
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 192 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR 251
           GE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLR
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDF 311
           Q + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV++F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 312 CQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 371
           C+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLF
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYMPL 414
           L+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEYMPL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT 474
           LAGQLGVEFFDEKLN+                                        LCM 
Sbjct: 421 LAGQLGVEFFDEKLNS----------------------------------------LCMA 440
Query: 475 WLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLA 534
           WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL+
Sbjct: 441 WLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 500
Query: 535 EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG 594
           E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL  
Sbjct: 501 EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 560
Query: 595 DTDVDVKYFAQEAISSIA 612
           D DVDVKYFAQEA++ ++
Sbjct: 561 DQDVDVKYFAQEALTVLS 578

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/620 (71%), Positives = 495/620 (79%), Gaps = 57/620 (9%)
Query: 10  DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLL 69
           DSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 70  ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
           ALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAH
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAG 189
           FVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTP VRRAAA 
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 190 KLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPT 249
           KLGE AKV+E+D +K++IIP F NLA DEQDSVRLLAVEACV+IA LL Q D+E LV PT
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 250 LRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVR 309
           LRQ + D SWRVRY VADKFT+LQKAVGPEITKTDLV AFQ L KD EAEVRAAA++KV+
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLP 369
           +FC+NL A  +EN+I + ILP +K+LV+D NQHVKSALASVI GLSPILGK NT++HLLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 370 LFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYM 412
           LFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY 
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 413 PLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALC 472
           PLLAGQLGVEFFDEKLN                                        +LC
Sbjct: 421 PLLAGQLGVEFFDEKLN----------------------------------------SLC 440
Query: 473 MTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINV 532
             WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+A S D NYLHR T LFCINV
Sbjct: 441 XAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINV 500
Query: 533 LAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 592
           L+E CG  +T    LPTVL  AGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 501 LSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560
Query: 593 NGDTDVDVKYFAQEAISSIA 612
             D DVDVKYFAQEA++ ++
Sbjct: 561 TQDQDVDVKYFAQEALTVLS 580

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  306 bits (783), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 174/210 (82%), Gaps = 1/210 (0%)
Query: 403 RVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE 462
           ++RL  I+ +  +A  LGVE   + L   +IVELAED+KWRVRLAIIEYMPLLAGQLGVE
Sbjct: 22  QLRLNSIKKLSTIALALGVERLSQSLLP-AIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 80
Query: 463 FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLH 522
           FFDEKLN+LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLH
Sbjct: 81  FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLH 140
Query: 523 RMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ 582
           RMT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +Q
Sbjct: 141 RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 200
Query: 583 SQVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           S+VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 201 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 230

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	615
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	0.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-57
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-16
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-16
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-12
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-13
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-12
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-10
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-12
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	9e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-05
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-10
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-09
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-06
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	3e-09
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-08
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-04
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	5e-06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	5e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	4e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  601 bits (1550), Expect = 0.0
 Identities = 467/609 (76%), Positives = 522/609 (85%), Gaps = 23/609 (3%)

Query: 4   SDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD 63
           + +  DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYD
Sbjct: 1   AAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD 60

Query: 64  EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
           EDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP
Sbjct: 61  EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120

Query: 124 HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMV 183
            DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMV
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180

Query: 184 RRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 243
           RRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE 240

Query: 244 QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAA 303
            LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAA
Sbjct: 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAA 300

Query: 304 AANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT 363
           A++KV++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT
Sbjct: 301 ASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360

Query: 364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEF 423
           ++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                      
Sbjct: 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---------------------- 398

Query: 424 FDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAI 483
             + L    IVELAED+KWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCM WLVDHVYAI
Sbjct: 399 LSQSLLPA-IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAI 457

Query: 484 REAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTA 543
           REAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL+E CG  +T 
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517

Query: 544 NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYF 603
             +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL  D DVDVKYF
Sbjct: 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577

Query: 604 AQEAISSIA 612
           AQEA++ ++
Sbjct: 578 AQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  201 bits (513), Expect = 3e-57
 Identities = 101/532 (18%), Positives = 192/532 (36%), Gaps = 34/532 (6%)

Query: 10  DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLL 69
             L P   L      E+  +R  +++ L  I+            +P +      +     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 70  ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
             A  L +             L     +L + +  +VR  A   L   +      ++++ 
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRNLCQDDTPMVRRAAA 188
            +P+   LAS +  + R  A          +    ++A +    R   +D +  VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM- 247
            K  EL K V  +  KTD++P F NL +D +  VR  A          LS    E ++M 
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 248 ---PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAA 304
              P +++   D +  V+  +A     L   +G + T   L+  F   LKD   EVR   
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 305 ANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV 364
            + +    + +        +   +LP + +L  D    V+ A+   +  L+  LG     
Sbjct: 384 ISNLDCVNEVIGI----RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439

Query: 365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFF 424
           + L  L ++ L D    +R    SNL                        L  + G E+ 
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNL----------------------KKLVEKFGKEWA 477

Query: 425 DEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIR 484
              +    ++ ++ D  +  R+  +  + +L+   G +   + +    +    D V  +R
Sbjct: 478 HATIIPK-VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR 536

Query: 485 EAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEA 536
                +L+K+     +   QS V P +  +++DQ+   +      + VL+ A
Sbjct: 537 FNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 78.8 bits (194), Expect = 1e-16
 Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 74/229 (32%)

Query: 172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 231
              L +D   +VRRA A +L                      L  DE   VR+       
Sbjct: 79  LTPLIRDSDEVVRRAVAYRLPREQ---------------LSALMFDEDREVRI------- 116

Query: 232 SIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKF---------TDLQKAVGPEITK 282
           ++A  L    +EQ+        + D  + VR  V  +           D  + V   + K
Sbjct: 117 TVADRLPLEQLEQM--------AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAK 168

Query: 283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQH 342
               ++  ++ +D E EVR   A         L                + +L+ DP+  
Sbjct: 169 RLPEESLGLMTQDPEPEVRRIVA-------SRLRG------------DDLLELLHDPDWT 209

Query: 343 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 391
           V+ A                  +H     L +L +  PEVRL I   L 
Sbjct: 210 VRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRLG 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 48/282 (17%), Positives = 77/282 (27%), Gaps = 98/282 (34%)

Query: 212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
           V    D     R +AV                      L     D+   VR  VA     
Sbjct: 56  VQYLADPFWERRAIAVRYSPV---------------EALTPLIRDSDEVVRRAVA----- 95

Query: 272 LQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY 331
               +  E            L+ D + EVR   A         L             L  
Sbjct: 96  --YRLPRE--------QLSALMFDEDREVRITVA-------DRLP------------LEQ 126

Query: 332 VKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL- 390
           ++ + AD +  V++ +                    L  F+   +DE  +VR  +   L 
Sbjct: 127 LEQMAADRDYLVRAYVVQ------------RIPPGRLFRFM---RDEDRQVRKLVAKRLP 171

Query: 391 -DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAII 449
            + +  +    +  VR  +                  +L    ++EL  D  W VRLA +
Sbjct: 172 EESLGLMTQDPEPEVRRIVAS----------------RLRGDDLLELLHDPDWTVRLAAV 215

Query: 450 EYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNL 491
           E+  L A +                 L +    +R A    L
Sbjct: 216 EHASLEALRE----------------LDEPDPEVRLAIAGRL 241

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 82.5 bits (202), Expect = 2e-16
 Identities = 89/660 (13%), Positives = 194/660 (29%), Gaps = 68/660 (10%)

Query: 8   PDDSLYPIA-VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGE--------LIPFLT 58
            +  +  I   L   + ++  QLR  S   L T+   L    +           +   LT
Sbjct: 80  KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 139

Query: 59  ETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE 112
             I  ++      E L  +A+ L      +    +   +L  L    T     VR + + 
Sbjct: 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLTSPRLAVRKRTII 197

Query: 113 SLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172
           +L  +               L+  L+  D  ++  +     +    +    +   L    
Sbjct: 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 257

Query: 173 R---NLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLA 226
                 C  D   +R           +    +   ++ T I      L  D   +     
Sbjct: 258 PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317

Query: 227 VEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK--TD 284
            +     A      D       +      D SW+VR   A     +       + +    
Sbjct: 318 EDENAMDADGGDDDDQGSDDEYSDDD---DMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374

Query: 285 LVQAFQMLLKDSEAEVRAAAAN----------KVRDFCQNLDAYNQENIIMTYILPYVKD 334
           +  A     K+ E  V+A   +           V+ +  + DA  Q    +T +   V +
Sbjct: 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434

Query: 335 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394
           +V   ++ +K            +L        L+ +    L    P +   II +L+  +
Sbjct: 435 IVKALHKQMKEKSVKTRQCCFNMLT------ELVNVLPGALTQHIPVLVPGIIFSLNDKS 488

Query: 395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL--SIVELAEDSKWRVRLAIIEYM 452
                    +++  +  + ++      + F   + AL   +V    D  +++    +   
Sbjct: 489 SSS-----NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVT 543

Query: 453 PLLAGQLGVEF------FDEKLNALCMTWL-----VDHVYAIREAATLNLKKLVEQFGSE 501
             L   +              +  L    +      D    ++E A   + +++   G  
Sbjct: 544 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603

Query: 502 WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT------VTANFLLPTVLNMAG 555
                     + + R +N + R+T +  + ++A +               +L + L    
Sbjct: 604 LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQ 663

Query: 556 DNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI 615
             +     +    L K      T  +   V   L  L  ++D+ V   A   ++++A   
Sbjct: 664 RALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 71/505 (14%), Positives = 154/505 (30%), Gaps = 43/505 (8%)

Query: 18   LIDELKNEDVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDEDEVLLALA-E 73
            L   L+     L+L ++  L  +               ++  L   I + D  +  +A  
Sbjct: 655  LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714

Query: 74   QLGTFTPNVG--GPEYVHCLLPPLESLATVEETVVRDKAVESL-RLISAQHSPHDLEAHF 130
             L T          +    +L  L  +  V   +++  A+ ++     A          +
Sbjct: 715  FLTTLAKVYPSSLSKISGSILNEL--IGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 772

Query: 131  VPLVQRLASGDW-----------FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179
            + L++ L    +           + S        +   P+    V  +     +N     
Sbjct: 773  MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN--SRS 830

Query: 180  TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 239
            T  +R  A   LGE+   +++     ++  + +       + V+  A  A  SI+     
Sbjct: 831  TDSIRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889

Query: 240  SDVEQLVMPTLRQCSGDTSWRVRYMVADK-FTDLQKAVGPEITKTDLVQAFQMLLKDSEA 298
              +  +    L++ +     +   + + K        VG +    ++        + +E 
Sbjct: 890  EYLPFV----LQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE 945

Query: 299  EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPIL 358
              R   A  +              I    +LP +K  +   + + +S++ + +       
Sbjct: 946  GTRNVVAECLGKLTL---------IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDH 996

Query: 359  GK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLA 416
             +     + + +  FL  L+D    VR   +      N     +   +R  +   +P L 
Sbjct: 997  PQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF---NSAAHNKPSLIRDLLDTVLPHLY 1053

Query: 417  GQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL 476
             +  V     +   +   +   D    +R A  E M  L           +        L
Sbjct: 1054 NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGL 1113

Query: 477  VDHVYAIREAATLNLKKLVEQFGSE 501
             DH Y I+    L L +L     S 
Sbjct: 1114 KDH-YDIKMLTFLMLVRLSTLCPSA 1137

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 72.9 bits (178), Expect = 2e-13
 Identities = 65/445 (14%), Positives = 146/445 (32%), Gaps = 21/445 (4%)

Query: 183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA-VEACVSIASLLSQSD 241
           ++R    KL +L +  + +     ++       + E +  R L+ +    ++ +      
Sbjct: 29  IQRTVQQKLEQLNQYPDFNNYLIFVL----TKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84

Query: 242 VEQL--VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAE 299
                 +        GD+S  +R  V    T +      +    DL+     LL   +  
Sbjct: 85  NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYN 143

Query: 300 VRAAAANKVRDFCQNLDAYNQENIIMTY---ILPYVKDLVADPNQHVKSALASVIMGLSP 356
               A   ++  C++       +++      ++P         +  ++S   + +     
Sbjct: 144 TCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203

Query: 357 ILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPL 414
              +     +D  +    +   DE PEVR N+   L  + EV   +       I+EYM  
Sbjct: 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263

Query: 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT 474
                      E       +      K  +   + + +P+L   +     D  L    + 
Sbjct: 264 RTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323

Query: 475 WLVDHV-----YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFC 529
                      + +R+ +   L  L   +  E     ++P +  +     ++ + + +  
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEWVVKESGILV 382

Query: 530 INVLAEACGPTVTANF--LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 587
           +  +AE C   +      L+P ++    D  A VR     TL +    + +    + +KP
Sbjct: 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 442

Query: 588 ALDKLNGDTDVDVKYFAQEAISSIA 612
            + +L        K   + A S+ A
Sbjct: 443 LMTELLKRILDSNKRVQEAACSAFA 467

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 69.8 bits (170), Expect = 1e-12
 Identities = 70/550 (12%), Positives = 148/550 (26%), Gaps = 98/550 (17%)

Query: 85  PEYVHCLLPPLESLATVEETVVRDKAVESLRLISA---QHSPHDLEAHFVPLVQRLASGD 141
           P++ + L+  L  L + +E       +     + A          +      +  +    
Sbjct: 44  PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS 103

Query: 142 WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV--- 198
               R +   L +    +       +L     +L   +       A G L ++ +     
Sbjct: 104 P-LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162

Query: 199 ----EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL--VMPTLRQ 252
                +D     +IP F+   +     +R  AV          +Q+ +  +   +  L  
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222

Query: 253 CSGDTSWRVRYMVADKFTDLQKAVGPEITK--TDLVQAFQMLLKDSEAEVRAAAANKVRD 310
            +GD    VR  V      L +     +     ++V+      +D +  V   A      
Sbjct: 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282

Query: 311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
             +     +                                            +  L+P+
Sbjct: 283 LAEQPICKDVLV---------------------------------------RHLPKLIPV 303

Query: 371 FLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA 430
            ++ +K    ++ L              I  W +R      + +LA     E     L  
Sbjct: 304 LVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL 363

Query: 431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN 490
           L   EL    +W V+ + I                     L          AI E     
Sbjct: 364 LK--ELLFHHEWVVKESGIL-------------------VLG---------AIAEGCMQG 393

Query: 491 LKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANF---LL 547
           +   + +         +IP ++    D+  L R    + ++  A          +   L+
Sbjct: 394 MIPYLPE---------LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444

Query: 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ--SQVKPALDKLNGDTDVDVKYFAQ 605
             +L    D+   V+         +     T ++   + +   L                
Sbjct: 445 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504

Query: 606 EAISSIADSI 615
           +AI ++ADS+
Sbjct: 505 DAIGTLADSV 514

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.3 bits (148), Expect = 6e-10
 Identities = 80/507 (15%), Positives = 161/507 (31%), Gaps = 69/507 (13%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR--GELIPFLTETIYDEDEVLLALA 72
           I  L     +E+ ++R N  + L  +              ++ ++ +   D+DE +   A
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276

Query: 73  -EQLGTFTPNVGGPEYVHCLLPPLESL--------------------------ATVEETV 105
            E   T        + +   LP L  +                           T+ +  
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336

Query: 106 VRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTS--ACGLFSVCYPRVTAG 163
           +R  +  +L +++  +    L      L + L   +W    +     G  +    +    
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396

Query: 164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR 223
              EL  H      D   +VR      L   A  V      T + P+   L +   DS +
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456

Query: 224 LLAVEACVSIASLLSQSDVE-----QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP 278
            +   AC + A+L  ++  E       ++ TL         +   ++ D    L  +VG 
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516

Query: 279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDF----------CQNLDAYNQE------N 322
            + K + +Q     L      ++    +                     Y +       N
Sbjct: 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVN 576

Query: 323 IIMTYILPYVKDLVADPNQHVKS---------ALASVIMGLSPILGKHNTVDHLLPLFLS 373
           ++   +   + +                     L+ +  GL   + +     ++L L   
Sbjct: 577 LVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 636

Query: 374 QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALS- 432
            ++D+ PEVR +  + L  + +        V+  I ++MP+L   L  EF     NA   
Sbjct: 637 CMQDKMPEVRQSSFALLGDLTKACF---QHVKPCIADFMPILGTNLNPEFISVCNNATWA 693

Query: 433 IVELAEDSKWRVRLAIIEYMPLLAGQL 459
           I E++          +  Y+P++  QL
Sbjct: 694 IGEISIQMGI----EMQPYIPMVLHQL 716

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 67.9 bits (165), Expect = 6e-12
 Identities = 56/580 (9%), Positives = 156/580 (26%), Gaps = 57/580 (9%)

Query: 16  AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED---------E 66
              +  L + + ++   + + ++ IA          EL+  + +    E           
Sbjct: 98  TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157

Query: 67  VLLALAEQLGTFTPNVGGPEYVHCLLPPL--ESLATVEETVVRDKAVESL----RLISAQ 120
            L  + E     +  +      + +L  +   + +T     VR  A+ +L      I   
Sbjct: 158 ALGYMCESADPQSQAL--VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGVKAELRSHFRNLC 176
                   + + +V      +    + +A G      S  Y  +   ++  L +      
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM 275

Query: 177 QDDTPMVRRAAAGKLGELA-----KVVEVDYLKTDIIPMFV------------------- 212
           +     V          +         E+       +  +                    
Sbjct: 276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTR 335

Query: 213 -NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
            N   ++ D    ++  AC+ + +    + + + V+  + Q     +WR R      F  
Sbjct: 336 QNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGS 395

Query: 272 LQKAVGPEITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYI 328
           +            + QA   +   + D   +V+   A  +     ++         +  +
Sbjct: 396 IMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455

Query: 329 LPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEV--RL 384
           +      + D  +   +   ++I  +  +     +   +    L    +           
Sbjct: 456 VQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFN 515

Query: 385 NIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV 444
              S    +  ++      V          +  +LG +      N L++ +     + + 
Sbjct: 516 ARASAFSALTTMVEYATDTVAETSASISTFVMDKLG-QTMSVDENQLTLEDAQSLQELQS 574

Query: 445 R-LAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA 503
             L ++  +   +        D  +              I +     +  L    G  + 
Sbjct: 575 NILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE 634

Query: 504 Q--STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV 541
           +   T  P ++      +    +T +  I  ++ +     
Sbjct: 635 KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 66.8 bits (162), Expect = 1e-11
 Identities = 66/484 (13%), Positives = 148/484 (30%), Gaps = 39/484 (8%)

Query: 159 RVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 218
           R+ A +        +N       +  +  A +          + +KT+ +          
Sbjct: 58  RILAAL------TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL----VSI 107

Query: 219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD--------TSWRVRYMVADKFT 270
           +  +   A +   +IA +         +M  +   +G          S      + +   
Sbjct: 108 EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167

Query: 271 DLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP 330
              +A+        +         ++   VR AA N + D    +    +      Y++ 
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227

Query: 331 YVKDLVADPNQHVKSALASV---IMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
            V +     +  V++A       IM       K      L  L ++ +K    +V    +
Sbjct: 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTV 287

Query: 388 SNLDCVNEV-IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL--SIVELAEDSKWRV 444
                + E  I I     +               ++     L  L     E  ED  W V
Sbjct: 288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347

Query: 445 RLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ 504
            ++    + L A   G    +  L  +    +    +  REAA +    +++        
Sbjct: 348 SMSAGACLQLFAQNCGNHILEPVLEFV-EQNITADNWRNREAAVMAFGSIMDGPDKVQRT 406

Query: 505 ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN---MAGDNV 558
                 +P ++ +  DQ+   + T  +CI  +A++   ++     LP V+    +   + 
Sbjct: 407 YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH 466

Query: 559 ANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG--------DTDVDVKYFAQEAISS 610
             V  N + T+  +   L               ++G        D + + +  A  A+++
Sbjct: 467 PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526

Query: 611 IADS 614
           + + 
Sbjct: 527 MVEY 530

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 64.7 bits (157), Expect = 9e-12
 Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 13/262 (4%)

Query: 22  LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTP 80
           ++ E+  +R  ++     +   L   +    ++  L E + D+   V+      +     
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 81  NVGGPEYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS 139
                +    +L  L S L   E   +  +  ++   + A+  P  +++    L      
Sbjct: 62  TR--EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQM-AKEKPELVKSMIPVLFANYRI 118

Query: 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 199
           GD  T    +  L  +   +    + A +   F ++        +  A   +  + +   
Sbjct: 119 GDEKTKINVSYALEEIA--KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-S 175

Query: 200 VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW 259
             Y+    +P  +NL  D  + VR  AVEA V +A+L     + ++V+  L + + DTS 
Sbjct: 176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELN-DTSS 231

Query: 260 RVRYMVADKFTDLQKAVGPEIT 281
            V   V +  + L    G   +
Sbjct: 232 LVNKTVKEGISRLLLLEGHSSS 253

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 58.9 bits (142), Expect = 6e-10
 Identities = 31/211 (14%), Positives = 75/211 (35%), Gaps = 12/211 (5%)

Query: 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 236
           +++   +R A A     L K++ +      ++   + L  D+  +V   A+   + IA  
Sbjct: 4   EEEEFDIREALANGE-HLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 237 LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS 296
             +   E ++           +  +   +A  F  + K   PE+ K  ++       +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELVK-SMIPVLFANYRIG 119

Query: 297 EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP 356
           + + +   +  + +  +           M  I+     +++  N+  K    + I  +  
Sbjct: 120 DEKTKINVSYALEEIAKANPML------MASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173

Query: 357 ILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
              K   V+  LP  ++ L D    VR + +
Sbjct: 174 NSFK--YVNPFLPRIINLLHDGDEIVRASAV 202

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 30/255 (11%), Positives = 86/255 (33%), Gaps = 29/255 (11%)

Query: 256 DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
           +  + +R  +A+    L+K +        +++    LL D    V   A + +       
Sbjct: 5   EEEFDIREALANGE-HLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVI---- 59

Query: 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL 375
            A  +E++    +      L       +   +A     ++    +   V  ++P+  +  
Sbjct: 60  -AKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL--VKSMIPVLFANY 116

Query: 376 KDECPEVRLNIISNLDCVNEV---------------IGIQQWRVRLAIIEYMPLLAGQLG 420
           +    + ++N+   L+ + +                +  +    +L  + ++  + G+  
Sbjct: 117 RIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM-GENS 175

Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
            ++ +  L  +  + L  D    VR + +E    L     +     K+    +  L D  
Sbjct: 176 FKYVNPFLPRI--INLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTS 230

Query: 481 YAIREAATLNLKKLV 495
             + +     + +L+
Sbjct: 231 SLVNKTVKEGISRLL 245

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 49/285 (17%), Positives = 88/285 (30%), Gaps = 47/285 (16%)

Query: 104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163
           T  + KA +   L   Q    + +     L + L   +     +SA  L           
Sbjct: 4   TYQKRKASKEYGLY-NQCKKLNDDE----LFRLLDDHNSLKRISSARVLQLRGGQDAVRL 58

Query: 164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS-V 222
                       C D   + R   A  LG++    + +    ++  +  N+A +++ + V
Sbjct: 59  AIE--------FCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALNDKSACV 107

Query: 223 RLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK 282
           R  A+E+             +  ++   +  + D S  VR   A        A+   I  
Sbjct: 108 RATAIESTAQRCKKNPIYSPK--IVEQSQITAFDKSTNVRRATAF-------AIS-VIND 157

Query: 283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQH 342
              +     LLKD   +VR  AA           A N      + I     +++ D N+ 
Sbjct: 158 KATIPLLINLLKDPNGDVRNWAA----------FAININKYDNSDIRDCFVEMLQDKNEE 207

Query: 343 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
           V+      +            +  L       LK     V  +II
Sbjct: 208 VRIEAIIGLSY----RKDKRVLSVLCDE----LKKN--TVYDDII 242

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 38/267 (14%), Positives = 67/267 (25%), Gaps = 35/267 (13%)

Query: 41  ALALGQERTRGEL-IPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESL 98
           +   G      +L    L   + D + +  ++ A  L       GG + V          
Sbjct: 11  SKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQ----LRGGQDAV----RLAIEF 62

Query: 99  ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158
            + +  + RD     L  I       D   + +     L         T+       C  
Sbjct: 63  CSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL-NNMALNDKSACVRATAIESTAQRCKK 121

Query: 159 RVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 218
                 K       +    D +  VRRA A  +  +     +  L        +NL +D 
Sbjct: 122 NPIYSPKIV--EQSQITAFDKSTNVRRATAFAISVINDKATIPLL--------INLLKDP 171

Query: 219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP 278
              VR  A  A      +         +     +   D +  VR             +  
Sbjct: 172 NGDVRNWAAFA------ININKYDNSDIRDCFVEMLQDKNEEVRIEAI-------IGLS- 217

Query: 279 EITKTDLVQAFQMLLKDSEAEVRAAAA 305
                 ++      LK +        A
Sbjct: 218 YRKDKRVLSVLCDELKKNTVYDDIIEA 244

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 43/231 (18%)

Query: 5   DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG-----ELIPFLTE 59
                +      +    L ++   +R       +T   +  Q   +      +++     
Sbjct: 83  ICKKCEDNVFNILNNMALNDKSACVR-------ATAIESTAQRCKKNPIYSPKIVEQSQI 135

Query: 60  TIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLIS 118
           T +D+   V  A A  +      +     +  L+  L+         VR+ A  ++ +  
Sbjct: 136 TAFDKSTNVRRATAFAIS----VINDKATIPLLINLLKD----PNGDVRNWAAFAININK 187

Query: 119 AQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD 178
              +    +      V+ L   +      +  GL      RV + +  EL+         
Sbjct: 188 YD-NSDIRDC----FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-------- 234

Query: 179 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
               V        GEL     +  L T        L + + + +   A++ 
Sbjct: 235 --NTVYDDIIEAAGELGDKTLLPVLDT-------MLYKFDDNEIITSAIDK 276

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 37/258 (14%), Positives = 64/258 (24%), Gaps = 44/258 (17%)

Query: 368 LPLFLSQLKDECPEVRLNIISNL------DCVNEVIGI---QQWRVRLAIIEYMPLLAGQ 418
                  L D     R++    L      D V   I     + +  R      +    GQ
Sbjct: 25  DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFIL----GQ 80

Query: 419 LGV-EFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNALCMTW 475
           + + +  ++ +  +       D    VR   IE       Q   +   +  K+       
Sbjct: 81  IKICKKCEDNVFNILNNMALNDKSACVRATAIEST----AQRCKKNPIYSPKIVEQSQIT 136

Query: 476 LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE 535
             D    +R A    +  +      +      IP ++ + +D N   R    F    +  
Sbjct: 137 AFDKSTNVRRATAFAISVI----NDK----ATIPLLINLLKDPNGDVRNWAAF---AINI 185

Query: 536 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD 595
                          + M  D    VR      L              +V   L      
Sbjct: 186 NKYDNSDI---RDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCDE--L 232

Query: 596 TDVDVKYFAQEAISSIAD 613
               V     EA   + D
Sbjct: 233 KKNTVYDDIIEAAGELGD 250

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 58.9 bits (142), Expect = 6e-10
 Identities = 24/190 (12%), Positives = 64/190 (33%), Gaps = 13/190 (6%)

Query: 432 SIVELAEDSKWRVRLAIIEYMPLLAG---QLGVEFFDEKLNALCMTWLVDHVYAIREAAT 488
              +  E+ KW +R   +E +  L     +L    +   ++AL      D    +   A 
Sbjct: 19  DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAG 78

Query: 489 LNLKKLVEQFGSEWAQ--STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL 546
             L  L +     ++   S  +P ++   +++           I+ +  +          
Sbjct: 79  KCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA----Q 134

Query: 547 LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ----SQVKPALDKLNGDTDVDVKY 602
             +++    +   +V+   A  + +     +   +       +  +L K   + D  V+ 
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194

Query: 603 FAQEAISSIA 612
            + EA+ ++ 
Sbjct: 195 SSAEALGTLI 204

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 30/240 (12%)

Query: 236 LLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL-- 293
           LL   D+   +         +  W +R    +    L     P++   +       L   
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKV 64

Query: 294 --KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVI 351
             KDS   + A A   +    + L    + +   +  +P + +   +   +V +AL   I
Sbjct: 65  ITKDSNVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAI 122

Query: 352 MGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY 411
                 +    +++      +  L ++ P V+      +        + + +      + 
Sbjct: 123 D----AIYASTSLEAQQESIVESLSNKNPSVKSETALFIARA-----LTRTQPTALNKKL 173

Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
           + LL   L              V+   +    VR +  E +  L   +G +     L  +
Sbjct: 174 LKLLTTSL--------------VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 24/214 (11%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELA----KVVEVDYLKTDIIPMFVN-LAQDE 218
           + +++   F +  ++    +R+ +   L +L     K+   +Y    ++      + +D 
Sbjct: 12  ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS 69

Query: 219 QDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV 276
              +  +A +    +A  L++  S+     +P+L +   +    V         +   A+
Sbjct: 70  NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVV----TALREAIDAI 125

Query: 277 GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV 336
               +     ++    L +    V++  A  +               ++  +   +   +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185

Query: 337 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
            +P+  V+ + A  +  L  ++G       L  +
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 18/194 (9%)

Query: 199 EVDYLKTDIIPMFVNLAQDEQDSVRLLAVE---ACVSIASLLSQSDVEQLVMPTLRQCSG 255
            VD L   +   F +  ++++ ++R  ++E     ++    L   +   LV    +  + 
Sbjct: 9   PVDILS-KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67

Query: 256 DTSWRVRYMVADKFTDLQKAVGPEITK--TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQ 313
           D++  +  M       L K +    +   +  V +     K+ +  V  A    +     
Sbjct: 68  DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127

Query: 314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLP 369
           +          +      + + +++ N  VKS  A  I                +  L  
Sbjct: 128 STS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179

Query: 370 LFLSQLKDECPEVR 383
             +  L +  P VR
Sbjct: 180 SLVKTLNEPDPTVR 193

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 18  LIDELKNEDVQLRLNSIKKLSTIALALGQERTR--GELIPFLTETIY-DEDEVLLALAEQ 74
             D+L+ +   LR  S++ L  +     +      G L+  L + I  D + VL+A+A +
Sbjct: 20  FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79

Query: 75  LGTFTPNVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
                          Y    +P L      ++  V     E++  I A  S         
Sbjct: 80  CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ----Q 135

Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRV--TAGVKAELRS---HFRNLCQDDTPMVRRA 186
             +    S    + ++      +    R   TA  K  L+           +  P VR +
Sbjct: 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195

Query: 187 AAGKLGELAKVV 198
           +A  LG L K++
Sbjct: 196 SAEALGTLIKLM 207

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 40/216 (18%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
           + + I  L+++   +R  +       A ALG+       +  L + + DED  V  A A+
Sbjct: 21  VEMYIKNLQDDSYYVRRAA-------AYALGKIGDE-RAVEPLIKALKDEDAWVRRAAAD 72

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            LG     +G    V     PL      E+  VR  A  +L  I         E    PL
Sbjct: 73  ALG----QIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPL 117

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 193
           ++ L   DWF    +A  L  +   R    +            +D+   VR++AA  LGE
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIK--------ALKDEDGWVRQSAADALGE 169

Query: 194 LAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
           +            +      LA+      R +AV  
Sbjct: 170 IG--------GERVRAAMEKLAETGTGFARKVAVNY 197

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 32/174 (18%)

Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKL 191
             ++ L    ++  R +A  L  +   R    +   L+        D+   VRRAAA  L
Sbjct: 23  MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--------DEDAWVRRAAADAL 74

Query: 192 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR 251
           G++             +   +   +DE   VR  A  A   I          +  +  L 
Sbjct: 75  GQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLI 118

Query: 252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA 305
           +   D  W VR   A        A+G EI     V+     LKD +  VR +AA
Sbjct: 119 KALKDEDWFVRIAAAF-------ALG-EIGDERAVEPLIKALKDEDGWVRQSAA 164

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 32/181 (17%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
           +  LI  LK+ED  +R  +   L  I             +  L + + DED  V  + A 
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALGQIGDE--------RAVEPLIKALKDEDGWVRQSAAV 103

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            LG     +G    V     PL      E+  VR  A  +L  I  + +         PL
Sbjct: 104 ALG----QIGDERAV----EPLIKALKDEDWFVRIAAAFALGEIGDERAVE-------PL 148

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 193
           ++ L   D +  +++A  L  +   RV A ++         L +  T   R+ A   L  
Sbjct: 149 IKALKDEDGWVRQSAADALGEIGGERVRAAMEK--------LAETGTGFARKVAVNYLET 200

Query: 194 L 194
            
Sbjct: 201 H 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 68/237 (28%)

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS----- 235
           P   +AAA    +            + + M++   QD+   VR  A  A   I       
Sbjct: 5   PQFEKAAAPLRAD-----------PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE 53

Query: 236 ----LLSQSDVE--------------QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG 277
                L   D                +  +  L +   D    VR   A        A+G
Sbjct: 54  PLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV-------ALG 106

Query: 278 PEITKTDLVQAFQMLLKDSEAEVRAAAAN---KVRDFCQNLDAYNQENIIMTYILPYVKD 334
            +I     V+     LKD +  VR AAA    ++ D                  +  +  
Sbjct: 107 -QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------------ERAVEPLIK 150

Query: 335 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 391
            + D +  V+ +       L  I G       +  L     +      R   ++ L+
Sbjct: 151 ALKDEDGWVRQS---AADALGEI-GGERVRAAMEKL----AETGTGFARKVAVNYLE 199

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 63/244 (25%)

Query: 368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEK 427
           + +++  L+D+   VR      L                          G++G E     
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYAL--------------------------GKIGDE---RA 51

Query: 428 LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAA 487
           +  L  ++  +D    VR A  + +    GQ+G E     +  L +  L D    +R++A
Sbjct: 52  VEPL--IKALKDEDAWVRRAAADAL----GQIGDE---RAVEPL-IKALKDEDGWVRQSA 101

Query: 488 TLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLL 547
            + L ++    G E A    +  ++   +D+++  R   +     L E           +
Sbjct: 102 AVALGQI----GDERA----VEPLIKALKDEDWFVR---IAAAFALGEIGDERA-----V 145

Query: 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEA 607
             ++    D    VR + A  L +IG          +V+ A++KL        +  A   
Sbjct: 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNY 197

Query: 608 ISSI 611
           + + 
Sbjct: 198 LETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 52/225 (23%), Positives = 81/225 (36%), Gaps = 40/225 (17%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
           + + I  L+++   +R          A ALG+       +  L + + DED  V  A A+
Sbjct: 16  VEMYIKNLQDDSYYVRRA-------AAYALGKIGDE-RAVEPLIKALKDEDAWVRRAAAD 67

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            LG     +G    V     PL      E+  VR  A  +L  I         E    PL
Sbjct: 68  ALG----QIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPL 112

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 193
           ++ L   DWF    +A  L  +   R    +            +D+   VR++AA  LGE
Sbjct: 113 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIK--------ALKDEDGWVRQSAADALGE 164

Query: 194 LAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 238
           +            +      LA+      R +AV    +  SL+S
Sbjct: 165 IGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 48/225 (21%), Positives = 76/225 (33%), Gaps = 43/225 (19%)

Query: 81  NVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG 140
           +   PE V   +  L+     +   VR  A  +L  I         E    PL++ L   
Sbjct: 9   HHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDE 57

Query: 141 DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV 200
           D +  R +A  L  +   R    +   L        +D+   VR++AA  LG++     V
Sbjct: 58  DAWVRRAAADALGQIGDERAVEPLIKAL--------KDEDGWVRQSAAVALGQIGDERAV 109

Query: 201 DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWR 260
           + L        +   +DE   VR+ A  A   I          +  +  L +   D    
Sbjct: 110 EPL--------IKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGW 153

Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA 305
           VR   A        A+G EI    +  A + L +      R  A 
Sbjct: 154 VRQSAA-------DALG-EIGGERVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 63/246 (25%)

Query: 368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEK 427
           + +++  L+D+   VR      L                          G++G E     
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYAL--------------------------GKIGDE---RA 46

Query: 428 LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAA 487
           +  L  ++  +D    VR A  + +    GQ+G E     +  L +  L D    +R++A
Sbjct: 47  VEPL--IKALKDEDAWVRRAAADAL----GQIGDE---RAVEPL-IKALKDEDGWVRQSA 96

Query: 488 TLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLL 547
            + L ++    G E A    +  ++   +D+++  R   +     L E           +
Sbjct: 97  AVALGQI----GDERA----VEPLIKALKDEDWFVR---IAAAFALGEIGDERA-----V 140

Query: 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEA 607
             ++    D    VR + A  L +IG          +V+ A++KL        +  A   
Sbjct: 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNY 192

Query: 608 ISSIAD 613
           + +   
Sbjct: 193 LETHKS 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 1e-09
 Identities = 58/446 (13%), Positives = 137/446 (30%), Gaps = 114/446 (25%)

Query: 199 EVDYLKTDIIPMFV-----NL-AQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 252
           E  Y   DI+ +F      N   +D QD  +           S+LS+ +++ ++M     
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-----------SILSKEEIDHIIM----- 56

Query: 253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF-QMLLKDSEAEVRAAAANKVRDF 311
            S D       +        Q+ +         VQ F + +L+ +   + +    + R  
Sbjct: 57  -SKDAVSGTLRLF-WTLLSKQEEM---------VQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 312 CQNLDAYNQE-NIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP----IL------GK 360
                 Y ++ + +      + K  V+    ++K  L   ++ L P    ++      GK
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGK 163

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV--IGIQQWRVRLAIIEYMPLLAGQ 418
             T      + L        + +++         ++  + ++       ++E +  L  Q
Sbjct: 164 --TW-----VALDVCLSYKVQCKMD--------FKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 419 LGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKL--NALCMTWL 476
           +   +     ++ +I       +  +R                     K   N L    L
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELR----------------RLLKSKPYENCL----L 248

Query: 477 V-DHVYAIREAATLNL--KKLV---EQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCI 530
           V  +V   +     NL  K L+    +  +++  +     +                  +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 531 NVL--------AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ 582
             L         E            P  L++  +++ +         + +     T +I+
Sbjct: 309 KYLDCRPQDLPREVLT-------TNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIE 360

Query: 583 SQVKPALDKLNGDTDVDVKYFAQEAI 608
           S    +L+ L  +     K F + ++
Sbjct: 361 S----SLNVL--EPAEYRKMFDRLSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 61/375 (16%), Positives = 110/375 (29%), Gaps = 114/375 (30%)

Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLP 369
           DF      Y  ++I+  +   +V +   D  + V+    S++            +DH++ 
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNF--DC-KDVQDMPKSIL--------SKEEIDHII- 55

Query: 370 LFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEF------ 423
                 KD          + L    E+  +Q++   +  I Y   L   +  E       
Sbjct: 56  ----MSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINY-KFLMSPIKTEQRQPSMM 108

Query: 424 ---FDEKLNAL--SIVELAEDSKWR------VRLAIIEYMP----LLAGQLGVEFFDEKL 468
              + E+ + L       A+ +  R      +R A++E  P    L+ G LG      K 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GK- 163

Query: 469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSE--W---AQSTVIPKVVAMSRDQNYLHR 523
                TW+                K+  +   +  W           V+ M   Q  L++
Sbjct: 164 -----TWVA--------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQ 208

Query: 524 MTCLFCINVLAEACGPTVT----------------ANFLLPTVLNMAGDNVANVR----F 563
           +   +       +                       N LL  VL     NV N +    F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL----LNVQNAKAWNAF 262

Query: 564 NV-AKTL---------QKIGPILETNVIQSQVKPALDKLNGDT------DVDVKYFAQEA 607
           N+  K L           +     T++        L      +      D   +   +E 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 608 -------ISSIADSI 615
                  +S IA+SI
Sbjct: 323 LTTNPRRLSIIAESI 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 63/456 (13%), Positives = 130/456 (28%), Gaps = 144/456 (31%)

Query: 17  VL-IDELKNEDVQLRLNSIKKLSTIA-LALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
            + +D   +  VQ +++       I  L L    +   ++  L + +Y  D    + ++ 
Sbjct: 165 WVALDVCLSYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 75  LGTFTPNVG-----------GPEYVHCLLPPLESLATVEE------------TVV--RDK 109
                  +               Y +CLL     L  V+              ++  R K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 110 AVESLRLISAQHSPH-DLEAHFVPLVQR-----LASGDWFTSRTS-----ACGLFSVCYP 158
            V     +SA  + H  L+ H + L        L    +   R                P
Sbjct: 276 QV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLT----TNP 327

Query: 159 RVTAGVKAELRSH------FRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDII-P 209
           R  + +   +R        ++++  D              +L  ++E  ++ L+      
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCD--------------KLTTIIESSLNVLEPAEYRK 373

Query: 210 MFVNLA------------------QDEQDSVRLLAVEACVSIASLLSQSDVE------QL 245
           MF  L+                     +  V ++  +      SL+ +   E       +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHK-YSLVEKQPKESTISIPSI 431

Query: 246 VMPTLRQCSGDTSW--RV--RYMVADKFTDLQKAVGP---------------EITKTDLV 286
            +    +   + +    +   Y +   F D    + P                I   + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 287 QAFQMLLKD---SEAEVRAA-----AANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD 338
             F+M+  D    E ++R       A+  + +  Q L  Y            Y+ D    
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP----------YICDNDPK 540

Query: 339 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 374
             + V  A+   +  +   L      D LL + L  
Sbjct: 541 YERLVN-AILDFLPKIEENLICSKYTD-LLRIALMA 574

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 56/399 (14%), Positives = 132/399 (33%), Gaps = 47/399 (11%)

Query: 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC--SGDTSWRV 261
           + ++    +     E       + +    IA      +    ++P L     + +++  +
Sbjct: 88  RREVKNYVLQTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM 146

Query: 262 RYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK-----DSEAEVRAAAANKVRDFCQNLD 316
           +    +    + + + PE  +    +    +++     +    V+ AA N + +  +   
Sbjct: 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206

Query: 317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASV---IMGLSPILGKHNTVDHLLPLFLS 373
           A   +     +I+  V +    P+  V+ A       IM L     +      L  + + 
Sbjct: 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266

Query: 374 QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI 433
            +K +  EV L             GI+ W         + + A +   +    +      
Sbjct: 267 AMKSDIDEVALQ------------GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT---- 310

Query: 434 VELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKK 493
                 SK+  + A+   +P+L   L  +  ++           D  +   +AA + L  
Sbjct: 311 ------SKFYAKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLML 354

Query: 494 LVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL---LPTV 550
           L      +     V+P +    ++ ++ +R   +     + E   P+     +   +PT+
Sbjct: 355 LATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413

Query: 551 LNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 589
           + +  D    VR   A T+ +I  +L    I       L
Sbjct: 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 51/367 (13%), Positives = 106/367 (28%), Gaps = 52/367 (14%)

Query: 18  LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED------EVLLAL 71
           ++  L  E  +   ++ + ++ IA A        ELIP L   + + +      E  L  
Sbjct: 95  VLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153

Query: 72  AEQLGTFTPNVGGPEYVHCLLPPLESLATVEET--VVRDKAVESLRLISAQHSPHDLEAH 129
              +          +  + +L  +      EE    V+  A  +L         +  +  
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES 213

Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLC--------QDDTP 181
               + ++         T           ++ +     + ++             + D  
Sbjct: 214 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID 273

Query: 182 MVRRAAAGKLGELAKVVE----------VDYLKTDIIPMFV------------------- 212
            V          +                     +    F                    
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333

Query: 213 NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDL 272
           +   D+ D     A   C+ + +   + D+   V+P +++   +  WR R      F  +
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393

Query: 273 QKAVGPEITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYIL 329
            +   P   K  ++QA   L   +KD    VR  AA  V   C+ L    +  I   Y+ 
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLA 450

Query: 330 PYVKDLV 336
           P ++ L+
Sbjct: 451 PLLQCLI 457

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 61/444 (13%), Positives = 139/444 (31%), Gaps = 58/444 (13%)

Query: 159 RVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 218
           RV AG+        +N      P ++     +   +         + ++    ++    E
Sbjct: 54  RVAAGL------QIKNSLTSKDPDIKAQYQQRWLAIDANA-----RREVKNYVLHTLGTE 102

Query: 219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC--SGDTSWRVRYMVADKFTDLQKAV 276
                  + +    IA      +    ++P L     + +++  ++    +    + + +
Sbjct: 103 TYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161

Query: 277 GPEITKTDLVQAFQMLLK-----DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY 331
            PE  +    +    +++     +    V+ AA N + +  +   A   +     +I+  
Sbjct: 162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV 221

Query: 332 VKDLVADPNQHVKSALASV---IMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 388
           V +    P+  V+ A       IM L     +      L  + +  +K +  EV L  I 
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281

Query: 389 NLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAI 448
               V +           A  +  P             K  A   ++             
Sbjct: 282 FWSNVCDEEMDLAIEASEAAEQGRP--------PEHTSKFYAKGALQ------------- 320

Query: 449 IEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVI 508
              +P+L   L  +  ++           D  +   +AA + L  L      +     V+
Sbjct: 321 -YLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIVP-HVL 368

Query: 509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL---LPTVLNMAGDNVANVRFNV 565
           P +    ++ ++ +R   +     + E   P+     +   +PT++ +  D    VR   
Sbjct: 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 428

Query: 566 AKTLQKIGPILETNVIQSQVKPAL 589
           A T+ +I  +L    I       L
Sbjct: 429 AWTVGRICELLPEAAINDVYLAPL 452

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 86/680 (12%), Positives = 198/680 (29%), Gaps = 91/680 (13%)

Query: 18  LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------VLLA 70
           ++  L  E  +   ++ + ++ IA A        ELIP L   + + +         L A
Sbjct: 95  VLHTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153

Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV--VRDKAVESLRLISAQHSPHDLEA 128
           +        P     +  + +L  +      EE    V+  A  +L         +  + 
Sbjct: 154 IGYICQDIDPEQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212

Query: 129 HFVPLVQRLASGDWFTS----RTSACGLF----SVCYPRVTAGVKAELRSHFRNLCQDDT 180
                + ++            R +A        S+ Y  +   +   L +      + D 
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272

Query: 181 PMVRRAA----------AGKLGELAKVVEVDYLKTDIIPMFVNLA--------------- 215
             V                 L   A          +    F                   
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332

Query: 216 ----QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
                D+ D     A   C+ + +   + D+   V+P +++   +  WR R      F  
Sbjct: 333 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392

Query: 272 LQKAVGPEITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNL-DAYNQENIIMTY 327
           + +   P   K  ++QA   L   +KD    VR  AA  V   C+ L +A   +  +   
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452

Query: 328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV----------------DHLLPLF 371
           +   ++ L       V S +      L+    +   V                + ++   
Sbjct: 453 LQCLIEGL--SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKL 510

Query: 372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 431
           L               S  + + E++         A+ +   ++  +   +    + +  
Sbjct: 511 LETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM-ERLQQVLQMESHIQ 569

Query: 432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL-----VDHVYAIREA 486
           S  +  +     ++  +   +  +  ++  +   +  + +  + L           ++E 
Sbjct: 570 STSDRIQF--NDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQED 627

Query: 487 ATLNLKKLVEQFGSEWAQ--STVIPKVV-AMSRDQNYLHRMTCLFCINVLAEACGPTVTA 543
           A + +  LVE  G E+ +      P +   +     Y   +  +  +  L  A    +  
Sbjct: 628 ALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687

Query: 544 NFLLPTVLNMAGDNVAN------VRFNVAKTLQKIGPILETNVIQ--SQVKPALDKLNGD 595
                 V+ +  +N+ N      V+  +      I   +     +    V   L + +  
Sbjct: 688 --FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQA 745

Query: 596 TDVDVKYFAQEAISSIADSI 615
                 Y   + ++ + +S 
Sbjct: 746 QVDKSDYDMVDYLNELRESC 765

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 74/518 (14%), Positives = 149/518 (28%), Gaps = 45/518 (8%)

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
           +P L  L   E+ VV +KA   +  +S + +           V  +V+ + + +   +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 148 SACG---LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VD 201
              G     S     + A  K+        +       V   A   L  L    E   + 
Sbjct: 76  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135

Query: 202 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL----VMPTLRQCSGDT 257
                 +   V L          +  +    +A    +S +  L        +      T
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195

Query: 258 SWRVRYMVADKFTDL--QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
             ++ +  +     L    +  P I +   +QA  + L D    +       +R    NL
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR----NL 251

Query: 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS-------PILGKHNTVDHLL 368
                +   M  +L  +  L+   + +V +  A ++  L+        ++ +   ++ L+
Sbjct: 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311

Query: 369 PLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFD 425
              L     +  ++       + +L   ++   + Q  VRL     +P++   L      
Sbjct: 312 RTVLR--AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG--LPVVVKLLHPPSHW 367

Query: 426 EKLNALS--IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-----D 478
             + A    I  LA        L     +P L   L     D +                
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 479 HVYAIREAATLNLKKLVEQFGSEWA--QSTVIPKVVAMSRDQNYLHRMTCLFCINVLA-- 534
            +  I E  T  L  L     +         IP  V +        +      +  LA  
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487

Query: 535 EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 572
           +     + A      +  +       V    A  L ++
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 54.3 bits (130), Expect = 8e-08
 Identities = 57/411 (13%), Positives = 133/411 (32%), Gaps = 48/411 (11%)

Query: 1   MASSDSAPDDSLYPIAV--LIDELKNEDVQLRLNSIKKLSTIALALGQERT-----RGEL 53
            A +D   +      +V  ++  + + +++ +L + +    + L+  ++       R  L
Sbjct: 43  KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL-LSREKQPPIDNIIRAGL 101

Query: 54  IPFLTETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR 107
           IP     +   D      E   AL   + + T            +P   SL       + 
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 108 DKAVESLRLISAQHSPHD----LEAHFV-PLVQRLASGDWFTS-----RTSACGLFSVCY 157
           ++AV +L  I A          ++   + PL+  LA  D  T      R     L ++C 
Sbjct: 161 EQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219

Query: 158 ---PRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMF 211
              P        ++      L   + P V   +   +  L           +K  ++P  
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 212 VNLAQDEQDSVRLLAVEACVSIAS---LLSQSDVEQLVMPTLRQCSGDTS--------WR 260
           V L    +  +   A+ A  +I +     +Q  ++   +        +          W 
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339

Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ 320
           +  + A +   +Q     ++    LV     +L  ++ + +  AA  + ++         
Sbjct: 340 MSNITAGRQDQIQ-----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

Query: 321 ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 371
             ++   I+  + +L++  +  +   +   I  +     K    + L  + 
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 62/426 (14%), Positives = 125/426 (29%), Gaps = 70/426 (16%)

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
           +P L  L   E+ VV +KA   +  +S + +           V  +V+ + + +   +  
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211

Query: 148 SACG---LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VD 201
              G     S     + A  K+       N+       V   A   L  L    E   + 
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271

Query: 202 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA--------------------SLLSQSD 241
                 +   V L          +  +    +A                    +++    
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 331

Query: 242 VEQL---VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEA 298
            E+L       L+  S  +S +                 P I +   +QA  + L D   
Sbjct: 332 YEKLLWTTSRVLKVLSVCSSNK-----------------PAIVEAGGMQALGLHLTDPSQ 374

Query: 299 EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS--- 355
            +       +R    NL     +   M  +L  +  L+   + +V +  A ++  L+   
Sbjct: 375 RLVQNCLWTLR----NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430

Query: 356 ----PILGKHNTVDHLLPLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAI 408
                ++ +   ++ L+   L     +  ++       + +L   ++   + Q  VRL  
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLR--AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488

Query: 409 IEYMPLLAGQLGVEFFDEKLNALS--IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDE 466
              +P++   L        + A    I  LA        L     +P L   L     D 
Sbjct: 489 G--LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 467 KLNALC 472
           +     
Sbjct: 547 QRRTSM 552

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 76/534 (14%), Positives = 157/534 (29%), Gaps = 74/534 (13%)

Query: 96  ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSV 155
              A   ET+     + S +  SA  +           VQRLA      S+     + ++
Sbjct: 93  VRAAMFPETLDEGMQIPSTQFDSAHPT----------NVQRLAEP----SQMLKHAVVNL 138

Query: 156 CYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK---VVEVDYLKTDIIPMFV 212
              +  A +          L  D+  +V   AA  + +L+K             ++   V
Sbjct: 139 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 198

Query: 213 NLAQDEQDSVRLLAVEACVSIASLLSQSD------VEQLVMPTLRQCSGDTSWRVRYMVA 266
              Q+  D   +            LS          +   +P L    G     V +   
Sbjct: 199 RTMQNTND---VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255

Query: 267 DKFTDL---QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI 323
               +L   Q+     +     +Q    LL  +  +  A   + ++      +  ++  I
Sbjct: 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLII 314

Query: 324 IMTYILPYVKDLVADPNQ-HVKSALASVIMGLS------PILGKHNTVDHLLPLFLSQLK 376
           + +     + +++       +    + V+  LS      P + +   +  L       L 
Sbjct: 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH----LT 370

Query: 377 DECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI 433
           D    +  N    + NL              +  +   +  L   LG +  +    A  I
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAAT--------KQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422

Query: 434 V-ELAEDSKWRVRLAIIEY--MPLLAGQL--GVEFFDEKLNALCMTWLVDHVYAIREAAT 488
           +  L  ++  + ++ + +   +  L   +    +  D    A+C         A+R   +
Sbjct: 423 LSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC---------ALRHLTS 472

Query: 489 LNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR-MTCLFCINVLA---EACGPTVTAN 544
            +  +  E   +       +P VV +    ++       +  I  LA       P     
Sbjct: 473 RH--QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 530

Query: 545 FLLPTV-LNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTD 597
            +   V L +        R ++  T Q+    +    I      AL  L  D  
Sbjct: 531 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH 584

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 70/479 (14%), Positives = 141/479 (29%), Gaps = 43/479 (8%)

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
           +P L  L   E+ VV +KA   +  +S + +           V  +V+ + + +   +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 148 SACG---LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VD 201
              G     S     + A  K+        +       V   A   L  L    E   + 
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 202 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL----VMPTLRQCSGDT 257
                 +   V L          +  +    +A    +S +  L        +      T
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 258 SWRVRYMVAD--KFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
             ++ +  +   K   +  +  P I +   +QA  + L D    +       +R    NL
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR----NL 254

Query: 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS-------PILGKHNTVDHLL 368
                +   M  +L  +  L+   + +V +  A ++  L+        ++ +   ++ L+
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 369 PLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFD 425
              L     +  ++       + +L   ++   + Q  VRL     +P++   L      
Sbjct: 315 RTVLR--AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG--LPVVVKLLHPPSHW 370

Query: 426 EKLNALS--IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-----D 478
             + A    I  LA        L     +P L   L     D +                
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430

Query: 479 HVYAIREAATLNLKKLVEQFGSEWAQST--VIPKVVAMSRDQNYLHRMTCLFCINVLAE 535
            +  I E  T  L  L     +         IP  V +        +      +  LA+
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 66/511 (12%), Positives = 151/511 (29%), Gaps = 73/511 (14%)

Query: 132 PLVQRLASGDWFTSRTSACGLFSVCY----PRVTAGVKAELRSHFRNLCQDDTPMVRRAA 187
            L + L   D      +A  +  +                + +  R +   +     R  
Sbjct: 21  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 188 AGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245
           AG L  L+   E  +   K+  IP  V +     DSV   A+     + +LL   +  ++
Sbjct: 81  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT---LHNLLLHQEGAKM 137

Query: 246 VM------PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQA------FQMLL 293
            +        +      T+ +   +  D    L  A G + +K  ++ +        ++ 
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL--AYGNQESKLIILASGGPQALVNIMR 195

Query: 294 KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG 353
             +  ++    +  ++         N+  I+    +  +   + DP+Q +       +  
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253

Query: 354 LSPILGKHNTVDHLLPLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIE 410
           LS    K   ++ LL   +  L  +   V      I+SNL C N        + ++ + +
Sbjct: 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-------KNKMMVCQ 306

Query: 411 Y--MPLLAGQLGVEFFDEK-----LNALSIVELAEDSKWRVRLAIIEY--MPLLAGQLGV 461
              +  L   +      E      + AL  +          + A+  +  +P++   L  
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366

Query: 462 EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYL 521
                 + A                  +    L     +   +   IP++V +    +  
Sbjct: 367 PSHWPLIKATV--------------GLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-- 410

Query: 522 HRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI 581
                    +             F+    +    +        +A+ +     I   N I
Sbjct: 411 --------QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462

Query: 582 QSQVKPALDKLNGDTDVDVKYFAQEAISSIA 612
                P   +L      +++  A   +  +A
Sbjct: 463 -----PLFVQLLYSPIENIQRVAAGVLCELA 488

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 51/399 (12%), Positives = 126/399 (31%), Gaps = 41/399 (10%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR-----GELIPFLTETIYDED---- 65
            + +I+ + ++  + +L++ +K   +                 ++    E +  ++    
Sbjct: 22  TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTL 81

Query: 66  --EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
             E    L   + +              +P    L + E   V+++AV +L  I A  S 
Sbjct: 82  QFESAWVLTN-IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI-AGDST 139

Query: 124 HD----LEAHFV-PLVQRLASGDWFT-SRTSACGLFSVCY---PRVTAGVKAELRSHFRN 174
                 L+ + + PL+Q  +  +  T +R +   L ++C    P       +   +    
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199

Query: 175 LCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACV 231
           L       V   A   L  L+          +   +    V L       V   A+ A  
Sbjct: 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259

Query: 232 SIAS---LLSQSDVEQLVMPTLRQCSGDTSWRVR--------YMVADKFTDLQKAVGPEI 280
           +I +   + +Q  +    + +L          ++         + A     +Q      +
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ-----TV 314

Query: 281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN 340
              ++  A   +L+ +E   R  AA  + +      A   + ++    +  + DL+   +
Sbjct: 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374

Query: 341 QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDEC 379
             +     + +  +  +  +    +         L +E 
Sbjct: 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 24/138 (17%)

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
           L P  S    E   VR     +L  +         +  F PL++ L++ DW     +A  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMG--------DEAFEPLLESLSNEDWRIRGAAAWI 65

Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 211
           + +    R               L +DD+  VR  AA  L ++            +    
Sbjct: 66  IGNFQDERAVE--------PLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAM 109

Query: 212 VNLAQDEQDSVRLLAVEA 229
             LA+      R +AV  
Sbjct: 110 EKLAETGTGFARKVAVNY 127

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 26/149 (17%)

Query: 118 SAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ 177
           S+ H  H      VP    +A  + +  R  +  L  +        +++           
Sbjct: 3   SSHHHHHHSSG-LVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLES---------LS 52

Query: 178 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 237
           ++   +R AAA  +G       V+ L        + L +D+   VR  A  +   I    
Sbjct: 53  NEDWRIRGAAAWIIGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGG-- 102

Query: 238 SQSDVEQLVMPTLRQCSGDTSWRVRYMVA 266
                 + V   + + +   +   R +  
Sbjct: 103 ------ERVRAAMEKLAETGTGFARKVAV 125

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 47.3 bits (111), Expect = 5e-06
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 26/204 (12%)

Query: 183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 242
           +      +  + A           I  +     Q +   VR+ AV            S  
Sbjct: 48  LIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFL------FGYLSKD 101

Query: 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQML---LKDSEAE 299
           +++++    + S D +WRV+ ++A       KA      K +  +A  ++   LK S   
Sbjct: 102 KEILIFMRDEVSKDNNWRVQEVLA-------KAFDEFCKKIEYKKALPIIDEWLKSSNLH 154

Query: 300 VRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG 359
            R AA   +R +                 +  + DL  D +++V+ ++ + +  +S    
Sbjct: 155 TRRAATEGLRIWTNRPYFKENP----NEAIRRIADLKEDVSEYVRKSVGNALRDIS---- 206

Query: 360 KHNTVDHLLPLFLSQLKDECPEVR 383
           K      L+ + L   K E  E+ 
Sbjct: 207 KKFP--DLVKIELKNWKLESKEIN 228

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 21/214 (9%), Positives = 61/214 (28%), Gaps = 22/214 (10%)

Query: 103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162
                D+ +  L+ +    +   L +       +L   D+     +A             
Sbjct: 28  FQAPTDEHISQLQTLLGNQAKVSLMS-------QLFHKDF-KQHLAALDSLVRLADTSPR 79

Query: 163 GVKAELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVE------VDYLKTDIIPMFVN 213
            + +      +       +  P            + +++            +  +P  + 
Sbjct: 80  SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL 139

Query: 214 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQ 273
              + +D++R    +    ++ ++    +  +++  L+      + R R           
Sbjct: 140 KTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK----SKNARQRSECLLVIEYYI 195

Query: 274 KAVGPEITKTD-LVQAFQMLLKDSEAEVRAAAAN 306
              G    K+  + +     + D +  VR AA N
Sbjct: 196 TNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAIN 229

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 24/208 (11%), Positives = 59/208 (28%), Gaps = 26/208 (12%)

Query: 259 WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY 318
           W  +    +  + LQ  +G +   +         L   + +   AA + +          
Sbjct: 26  WNFQAPTDEHISQLQTLLGNQAKVS-----LMSQLFHKDFKQHLAALDSLVRLADTSPRS 80

Query: 319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT------VDHLLPLFL 372
              N     +L +      + N      +  +   +  ++    T      V   +P  L
Sbjct: 81  LLSNS--DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL 138

Query: 373 SQLKDECPEVRLNIISNLDCVNEVIGIQ-------------QWRVRLAIIEYMPLLAGQL 419
            +  +    +R ++   ++ +++V+G                 R R   +  +       
Sbjct: 139 LKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198

Query: 420 GVEFFDEKLNALSIVELAEDSKWRVRLA 447
           G+          ++     D    VR A
Sbjct: 199 GISPLKSLSVEKTVAPFVGDKDVNVRNA 226

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 15/184 (8%)

Query: 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE------QLVMPTLRQCSGDTSWR 260
           ++        +   +  +  +E C  I  L+  ++           +P L   +G+    
Sbjct: 88  LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDN 147

Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ 320
           +R  V D    L   VGP      +       LK   A  R+     +  +   +     
Sbjct: 148 MRTSVRDIVNVLSDVVGPLK----MTPMLLDALKSKNARQRSECLLVIEYY---ITNAGI 200

Query: 321 ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDE 378
             +    +   V   V D + +V++A  +V++      G         +     S +++ 
Sbjct: 201 SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEER 260

Query: 379 CPEV 382
               
Sbjct: 261 IKRT 264

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 51/340 (15%), Positives = 84/340 (24%), Gaps = 40/340 (11%)

Query: 41  ALALGQERTRGELIPFLTETIYDEDE---------VLLALAEQLGTFTPNVGGPEYVHCL 91
            L L       +   +L   I +            +L   +  +G         E    L
Sbjct: 418 GLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEAL 477

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
              L +    +     + A   + L        +         Q    G+   +R  A G
Sbjct: 478 KEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI--TRGLAVG 531

Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 211
           L  + Y     G +         +   D  ++R   A  +  LA     +     +  + 
Sbjct: 532 LALINY-----GRQELADDLITKMLASDESLLRYGGAFTIA-LAYAGTGNNSA--VKRLL 583

Query: 212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
                D  D VR  AV A   +            V   ++  S   +  VR   A     
Sbjct: 584 HVAVSDSNDDVRRAAVIALGFVLL-----RDYTTVPRIVQLLSKSHNAHVRCGTAFALGI 638

Query: 272 LQKAVGPEITKTDLVQAFQMLLKDSEAEVR--AAAANKVRDFCQNLDAYNQENIIMTYIL 329
                         +     L KD    VR  A  A  +    Q      Q   I    L
Sbjct: 639 A----CAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694

Query: 330 PYVKDLVADPNQHVKSALASVIMGLSPI-LGKHNTVDHLL 368
             + +   +       A     +    +  G  N    L 
Sbjct: 695 SVITNKHQEGL-----AKFGACVAQGIMNAGGRNVTIQLE 729

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 44/261 (16%), Positives = 82/261 (31%), Gaps = 21/261 (8%)

Query: 8   PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALAL-GQERTRGELIPFLTETIYDEDE 66
             D+   +  +I E         ++ +   +++ + L        E+   L E +Y++  
Sbjct: 427 GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA 486

Query: 67  VLLALAEQ-LGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125
                A   +G      G PE +H +    +   T    + R  AV  L LI+       
Sbjct: 487 TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE--TQHGNITRGLAV-GLALINYGR---- 539

Query: 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRR 185
            +     L+ ++ + D    R       ++ Y     G  + ++        D    VRR
Sbjct: 540 -QELADDLITKMLASDESLLRYGGAFTIALAYAGT--GNNSAVKRLLHVAVSDSNDDVRR 596

Query: 186 AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245
           AA   LG +          T +  +   L++     VR     A      +       Q 
Sbjct: 597 AAVIALGFVLLRDY-----TTVPRIVQLLSKSHNAHVRCGTAFAL----GIACAGKGLQS 647

Query: 246 VMPTLRQCSGDTSWRVRYMVA 266
            +  L   + D    VR    
Sbjct: 648 AIDVLDPLTKDPVDFVRQAAM 668

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 36/284 (12%), Positives = 90/284 (31%), Gaps = 21/284 (7%)

Query: 132 PLVQRLASGDWFTSRTSACGLFSVC----YPRVTAGVKAELRSHFRNLCQ-DDTPMVRRA 186
            + Q+L S D     ++      +      P +   ++A +        + +   M++  
Sbjct: 91  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 150

Query: 187 AAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA---SLLSQS 240
           AA  L  +A          +  D +P+F+ L       V+  A+ A  ++A   +     
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSE 297
            ++   M  +          +        ++L +   P+      +  +     L+   +
Sbjct: 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270

Query: 298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL--- 354
            E    A   +            + +I   I   + +L++  +  V++     +  +   
Sbjct: 271 TETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329

Query: 355 SPILGKHNTVDHLLPLFLSQLKDECPEVRLN---IISNLDCVNE 395
           + +  +      +LP     L      ++      ISN+   N 
Sbjct: 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 373

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 69/522 (13%), Positives = 150/522 (28%), Gaps = 73/522 (13%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
           + +L     +++  +R+ ++  L  +    GQ+                 D   L LAE 
Sbjct: 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQD----------AAIRPFGDGAALKLAEA 381

Query: 75  LGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL----EAHF 130
              F    G  +                   +R  A + L  ++      +     +A  
Sbjct: 382 CRRFLIKPGKDK------------------DIRRWAADGLAYLTLDAECKEKLIEDKASI 423

Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGK 190
             L+     G+            ++C     A  K E+      L +     +       
Sbjct: 424 HALMDLARGGNQSCLYGVVTTFVNLC----NAYEKQEMLPEMIELAKFAKQHIPEEHELD 479

Query: 191 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMP 248
             +             I      LA+ E  + + L      ++  L       V++  + 
Sbjct: 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK 539

Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF------QMLLKDSEAEVRA 302
            L + + + + + +         +   + PE++ +             +L +D  A    
Sbjct: 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599

Query: 303 AAANKVRDFCQNLDAYNQEN---IIMTYILPYVKDLVADPNQHVKSALASVIMGLS---P 356
            +   +     NL + N+     II    +  ++  + + + ++  A A  +  L     
Sbjct: 600 ESLMALT----NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655

Query: 357 ILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY---MP 413
           ++      +  +       +DE  E        L  +         +    I+     + 
Sbjct: 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS----VSVKCCEKILAIASWLD 711

Query: 414 LLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM 473
           +L   +       +   + I+           L +I     +A +L      E L+ L  
Sbjct: 712 ILHTLIANPSPAVQHRGIVII-----------LNMINAGEEIAKKLFETDIMELLSGLGQ 760

Query: 474 TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS 515
               D     RE AT  L         E + +  IP V A +
Sbjct: 761 L-PDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFAEN 801

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 33/241 (13%), Positives = 78/241 (32%), Gaps = 36/241 (14%)

Query: 175 LCQDDTPMVRRAAAGKLGELAK-----VVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
               D    + +A  K  ++       +  V  +    +P  V L     + +   A+ A
Sbjct: 20  QLNSDDMQEQLSATRKFSQILSDGNEQIQAV--IDAGALPALVQLLSSPNEQILQEALWA 77

Query: 230 CVSIASLLSQSDVEQLVM-----PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE----- 279
             +IAS    ++  Q V+     P L Q     + ++        +++  A G       
Sbjct: 78  LSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--ASGGNEQIQA 133

Query: 280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADP 339
           +     + A   LL     ++   A   + +     +    + +I    LP +  L++ P
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP 192

Query: 340 NQHVKSALASVIMGLS-------PILGKHNTVDHLLPLFLSQLKDECPEVR---LNIISN 389
           N+ +       +  ++         + +   ++ L  L       E  +++      +  
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL----QSHENEKIQKEAQEALEK 248

Query: 390 L 390
           L
Sbjct: 249 L 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	615
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.95
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.93
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.9
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.89
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.86
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.82
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.8
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.8
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.79
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.78
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.75
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.73
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.72
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.7
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.69
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.68
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.68
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.66
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.64
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.64
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.64
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.63
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.63
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.58
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.58
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.57
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.56
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.54
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.54
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.52
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.52
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.5
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.5
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.49
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.49
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.48
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.48
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.48
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.47
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.46
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.46
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.46
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.45
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.43
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.37
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.35
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.3
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.24
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.23
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.22
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.22
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.21
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.1
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.04
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.02
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.02
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.0
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.93
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.93
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.92
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.92
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.9
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.88
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.87
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.84
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.84
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.82
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.8
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.79
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.43
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.33
3grl_A	651	General vesicular transport factor P115; vesicle t	98.11
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.06
3grl_A	651	General vesicular transport factor P115; vesicle t	97.95
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.83
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.76
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.74
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.32
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.72
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.68
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.24
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.19
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	96.13
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	95.63
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	93.41
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	92.78
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.11
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	92.02
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	91.35
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	90.9
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	90.75
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	89.82
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.68
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	89.57
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	88.45
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	88.27
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	88.01
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	84.31
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	83.95
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	83.41
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	83.13
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	82.07
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	80.34

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=8.9e-62  Score=521.06  Aligned_cols=584  Identities=80%  Similarity=1.209  Sum_probs=537.5

Q ss_pred             CCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcc
Q psy14014          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPE   86 (615)
Q Consensus         7 ~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~   86 (615)
                      .+|+++++|..++..++|+|+..|..|++.+..++..+|++..+++++|++.+.++++++||..++++|+.+.+.++++.
T Consensus         4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~   83 (588)
T 1b3u_A            4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence            35889999999999999999999999999999999999988889999999998886666799999999999998887778


Q ss_pred             hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHH
Q psy14014         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (615)
Q Consensus        87 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  166 (615)
                      +.+.+++.|..+..++++.||..|++++..++..++++.+.+.++|.+..+.++++...|..++.+++.++...++..++
T Consensus        84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~  163 (588)
T 1b3u_A           84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            88999999999999999999999999999999999998888899999999999999999999999999999999988899


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhH
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV  246 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  246 (615)
                      .+++.+..+++|+++.||..++++++.+++..+.+...+.++|.+..+++|+++.||..|+.+++.++..++++...+.+
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  243 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998887777899999999999999999999999999999999988778889


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      +|.+.++++|++|.||.+++++++.++...+.+.....++|.+..+++|++++||..|+.+++.++..++++.....+.+
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  323 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence            99999999999999999999999999998887665678999999999999999999999999999998876544445678


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHH
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL  406 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  406 (615)
                      .++|.+..+++|++|.||.+++.+++.++..+|.+...++++|.+..+++|++++||..++.+++.+....+.+.+.+..
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~  403 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL  403 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            89999999999999999999999999999999987777889999999999999999999999999998877754332222


Q ss_pred             HHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHH
Q psy14014        407 AIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREA  486 (615)
Q Consensus       407 ~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~  486 (615)
                           +                  |.+.+.++|++|++|..++.+++.++..+|.+++.+.++|.+...+.|+++.||..
T Consensus       404 -----l------------------p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~  460 (588)
T 1b3u_A          404 -----L------------------PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA  460 (588)
T ss_dssp             -----H------------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred             -----H------------------HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence                 3                  67777888999999999999999999999998877889999999999999999999


Q ss_pred             HHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHH
Q psy14014        487 ATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVA  566 (615)
Q Consensus       487 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~  566 (615)
                      |+.+++.++..+|.++..+.++|.+..+..++++.+|..++.+++.+++.++...+.+.++|.+.++++|++++||..++
T Consensus       461 a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~  540 (588)
T 1b3u_A          461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHH
Confidence            99999999999998877778999999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        567 KTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       567 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ++|+.+...++.....+.+.|.+..+.+|+|.+||..|..|++.+.+
T Consensus       541 ~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          541 KSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            99999999888776668899999999999999999999999998864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=2.5e-46  Score=401.10  Aligned_cols=529  Identities=18%  Similarity=0.234  Sum_probs=465.8

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhchHHH
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPL   95 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l   95 (615)
                      .++....+++..+|..+.+.|+.+...++.......++|.+..+..+++ .||..+..+|+.++...+.+...+.++|.+
T Consensus        52 ~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l  131 (588)
T 1b3u_A           52 PFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV  131 (588)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            3344444788899999999999888777766577889999988887766 599999999999998765555567789999


Q ss_pred             hhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh-hhHHHHHHHHHH
Q psy14014         96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRN  174 (615)
Q Consensus        96 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-~~~~~l~~~l~~  174 (615)
                      ..+..+++..+|..++..+..+....+.. ..+.++|.+..+..|++..+|..++..++.+....+. .....++|.+..
T Consensus       132 ~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  210 (588)
T 1b3u_A          132 KRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN  210 (588)
T ss_dssp             HHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHH
Confidence            99988889999999999999999888754 4677899999999999999999999999999888875 345778999999


Q ss_pred             HhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc
Q psy14014        175 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS  254 (615)
Q Consensus       175 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  254 (615)
                      +++|+++.||..++.+++.++...+++...+.++|.+..+++|+++.||..+..+++.++...+++.+.+.++|.+.+++
T Consensus       211 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  290 (588)
T 1b3u_A          211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM  290 (588)
T ss_dssp             HHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh
Confidence            99999999999999999999998887777788999999999999999999999999999999988777788999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCcc----chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014        255 GDTSWRVRYMVADKFTDLQKAVGPE----ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP  330 (615)
Q Consensus       255 ~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p  330 (615)
                      +|+++.||.+++.+++.++..++.+    ...+.++|.+..+++|+++.||.+++.+++.++..++.+    ...+.++|
T Consensus       291 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~p  366 (588)
T 1b3u_A          291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD----NTIEHLLP  366 (588)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH----HHHHHTHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh----HHHHHHHH
Confidence            9999999999999999999988765    345689999999999999999999999999999877654    23567899


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHh
Q psy14014        331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIE  410 (615)
Q Consensus       331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~  410 (615)
                      .+..+++|+++.||..++.+++.+...+|.+...+.++|.+.++++|.+|.+|..++.+++.+....|.+.+        
T Consensus       367 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--------  438 (588)
T 1b3u_A          367 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF--------  438 (588)
T ss_dssp             HHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC--------
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH--------
Confidence            999999999999999999999999988887767778999999999999999999999998888766654321        


Q ss_pred             hhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy14014        411 YMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN  490 (615)
Q Consensus       411 ~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~  490 (615)
                                    .+.+. |.+..+++|+++.+|..++.+++.++..+|.+++.+.++|.+..++.|+++.+|.+++.+
T Consensus       439 --------------~~~l~-~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~  503 (588)
T 1b3u_A          439 --------------DEKLN-SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             --------------CHHHH-HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             --------------HHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence                          11112 677888999999999999999999999999988888999999999999999999999999


Q ss_pred             HHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHH
Q psy14014        491 LKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQ  570 (615)
Q Consensus       491 l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~  570 (615)
                      ++.++..+|.+.+.+.++|.+.++++|+++.+|..++.+++.+...+|.....+.+.|.+.++.+|++++||..++.+++
T Consensus       504 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~  583 (588)
T 1b3u_A          504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT  583 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence            99999999887777889999999999999999999999999999999988777889999999999999999999999998


Q ss_pred             HHh
Q psy14014        571 KIG  573 (615)
Q Consensus       571 ~l~  573 (615)
                      .+.
T Consensus       584 ~l~  586 (588)
T 1b3u_A          584 VLS  586 (588)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=5.2e-35  Score=325.62  Aligned_cols=557  Identities=15%  Similarity=0.138  Sum_probs=420.7

Q ss_pred             hccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH--
Q psy14014         50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL--  126 (615)
Q Consensus        50 ~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--  126 (615)
                      +..+.+.+.+.+.++++ ||..++.+++.+++.. .++.|+.+++.+.+.+.++++.+|..++.++..+++..++..-  
T Consensus        88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~  166 (852)
T 4fdd_A           88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD  166 (852)
T ss_dssp             HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence            33444555555666664 9999999999988753 4567899999999999999999999999999999998875421  


Q ss_pred             -----hhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh
Q psy14014        127 -----EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV  198 (615)
Q Consensus       127 -----~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~  198 (615)
                           .+.++|.+..+..+++..+|..|+..+..+....+...   ...+++.+..+++|+++.||+.++++++.+++..
T Consensus       167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~  246 (852)
T 4fdd_A          167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR  246 (852)
T ss_dssp             SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence                 34578888888888888999999998887776555432   3567788888899999999999999999999876


Q ss_pred             chh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhc-----------CC-----
Q psy14014        199 EVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCS-----------GD-----  256 (615)
Q Consensus       199 ~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d-----  256 (615)
                      +..  .+...+++.+...++|.++.||..|++.+..+++....    ..+.+.++|.+.+.+           .|     
T Consensus       247 ~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~  326 (852)
T 4fdd_A          247 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS  326 (852)
T ss_dssp             HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence            542  33457889999999999999999999999998764321    123445777776665           34     


Q ss_pred             ------CChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014        257 ------TSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP  330 (615)
Q Consensus       257 ------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p  330 (615)
                            .+|.+|.+++.+++.++...++. ..+.++|.+...++|+++.+|.+|+.+++.++...+....  .+.+.++|
T Consensus       327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~  403 (852)
T 4fdd_A          327 GGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIP  403 (852)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHH
Confidence                  67899999999999999988854 4568899999999999999999999999999987654222  35688999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH--HHHH
Q psy14014        331 YVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ--WRVR  405 (615)
Q Consensus       331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  405 (615)
                      .+...++|+++.||.+++++++.+++..+.   ..+...++|.+.+.+.|.++.||..|+.+++.+.+..+..-  +-..
T Consensus       404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~  483 (852)
T 4fdd_A          404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY  483 (852)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHH
Confidence            999999999999999999999999987654   34566789999999999999999999999998886654321  0000


Q ss_pred             H-----------------HHHhhhhhhhhcccc-----chhhhhhhhHHHH---HhhhcCCchHHHHHHHHhHHHHhhhC
Q psy14014        406 L-----------------AIIEYMPLLAGQLGV-----EFFDEKLNALSIV---ELAEDSKWRVRLAIIEYMPLLAGQLG  460 (615)
Q Consensus       406 ~-----------------~i~~~l~~l~~~~~~-----~~~~~~l~~~~i~---~~~~~~~~~vr~~~~~~l~~l~~~~~  460 (615)
                      +                 .+.+.+..++...|.     +|+...+  |.+.   ..+.+....+| .+++++..++..+|
T Consensus       484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~--p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g  560 (852)
T 4fdd_A          484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM--PPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ  560 (852)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH--HHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH--HHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence            0                 011222222222222     2333322  4444   23345566665 78999999999998


Q ss_pred             hHh--HHHHHHHHHHHhcC-----------------CcchHHHHHHHHHHHHHHHHhChHHh----hhchhHHHHhhhcC
Q psy14014        461 VEF--FDEKLNALCMTWLV-----------------DHVYAIREAATLNLKKLVEQFGSEWA----QSTVIPKVVAMSRD  517 (615)
Q Consensus       461 ~~~--~~~~l~~~l~~~l~-----------------d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d  517 (615)
                      ..+  +.+.+++.+++.+.                 .++..+|.+++.+++.++..+|.++.    ...+++.+...+.|
T Consensus       561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~  640 (852)
T 4fdd_A          561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD  640 (852)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence            754  23455554444332                 22567899999999999999987532    14689999999999


Q ss_pred             CCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhc
Q psy14014        518 QNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLN  593 (615)
Q Consensus       518 ~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~  593 (615)
                      +++.+|..+..+++.++..++...  +.+.++|.+.+.+++..+.+|.+++++++.++...+.+  .+...+.+.+..++
T Consensus       641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l  720 (852)
T 4fdd_A          641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII  720 (852)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence            999999999999999998887643  34678999999998889999999999999999887642  22233333333334


Q ss_pred             CCC--CccHHHHHHHHHHHHhh
Q psy14014        594 GDT--DVDVKYFAQEAISSIAD  613 (615)
Q Consensus       594 ~d~--d~~v~~~a~~a~~~~~~  613 (615)
                      +++  ...++++|..+++.++.
T Consensus       721 ~~~~~~~~~~~~a~~~igrl~~  742 (852)
T 4fdd_A          721 NRPNTPKTLLENTAITIGRLGY  742 (852)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHH
Confidence            444  45899999999998874

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=1.4e-34  Score=324.20  Aligned_cols=595  Identities=13%  Similarity=0.070  Sum_probs=453.1

Q ss_pred             HHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc-H-HHHHHHHHHhccccCCCCC-----cchh
Q psy14014         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-D-EVLLALAEQLGTFTPNVGG-----PEYV   88 (615)
Q Consensus        16 ~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~-~-~vr~~a~~~l~~l~~~~~~-----~~~~   88 (615)
                      ..+++.+.++++.+|..+.+.++.++....+...|++++|.+.+.+.++ + .+|..+..+++.+.+..+.     ..+.
T Consensus        98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  177 (861)
T 2bpt_A           98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence            3566788899999999999999999988766557899999999988876 5 4999999999888765432     2467


Q ss_pred             hhchHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChh----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh
Q psy14014         89 HCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (615)
Q Consensus        89 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  162 (615)
                      +.+++.+...+.++  +..||..+++++..+...+...    ...+.+++.+.....+++..+|..++.++..+....++
T Consensus       178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~  257 (861)
T 2bpt_A          178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888887  7899999999999987665422    12356888888888888889999999888877654433


Q ss_pred             h---hHH-HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-------------------hhhHhhhHHHHHHhhcc--
Q psy14014        163 G---VKA-ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-------------------DYLKTDIIPMFVNLAQD--  217 (615)
Q Consensus       163 ~---~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~~d--  217 (615)
                      .   ... .+++.+...+.|.+..+|..+++.+..+++....                   ......++|.+...+.+  
T Consensus       258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2   223 6777788888999999999999999998876421                   11235678888777763  


Q ss_pred             -----CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHHHH
Q psy14014        218 -----EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQAF  289 (615)
Q Consensus       218 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l  289 (615)
                           +++.+|..+..++..++..+++ ...+.++|.+.+.+++++|++|.+++.+++.++...+.+.   ..+.++|.+
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l  416 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                 3468999999999999998884 4567789999999999999999999999999986554221   234688999


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc------hhh
Q psy14014        290 QMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK------HNT  363 (615)
Q Consensus       290 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~------~~~  363 (615)
                      ...++|+++.||..++.+++.++..+++......+.+.++|.+.+.++|. +.||..++.++..+++..+.      ..+
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~  495 (861)
T 2bpt_A          417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            99999999999999999999999887653211235678889988888886 99999999999999887651      234


Q ss_pred             hhhhHHHHHHhhcC--CChhHHHHHHHhhhHhhhhhchhHHH----------------------------------HHHH
Q psy14014        364 VDHLLPLFLSQLKD--ECPEVRLNIISNLDCVNEVIGIQQWR----------------------------------VRLA  407 (615)
Q Consensus       364 ~~~l~p~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~----------------------------------~~~~  407 (615)
                      .+.+++.+.+.+++  .++.||..++++++.+....+.....                                  .+..
T Consensus       496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            56778888888874  44789999999999887765532100                                  0001


Q ss_pred             HHhhhhhhhhccccc---hhhhhhhhHHHHHhhhcCCc-hHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcch
Q psy14014        408 IIEYMPLLAGQLGVE---FFDEKLNALSIVELAEDSKW-RVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVY  481 (615)
Q Consensus       408 i~~~l~~l~~~~~~~---~~~~~l~~~~i~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  481 (615)
                      +++.+..+...+|..   +....+  +.+...+++.++ .+|..++.+++.++...|.++  +.+.++|.+.+.++++++
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~~~l~--~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~  653 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVADMLM--GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDS  653 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHH--HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccH
Confidence            222233333334432   222222  566677777777 899999999999999888764  457899999999998899


Q ss_pred             HHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCC--chHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCC
Q psy14014        482 AIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQN--YLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAG  555 (615)
Q Consensus       482 ~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~  555 (615)
                      .+|..++.+++.++..+|..+  +...++|.+.+.+.+++  +.+|..++.+++.++..++..+  +.+.++|.+.+.+.
T Consensus       654 ~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~  733 (861)
T 2bpt_A          654 PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN  733 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999988643  34567888888887765  8899999999999999887754  35678888887765


Q ss_pred             CCC-----------chHHHHHHHHHHHHhHhhh--hhhHHhh---HHHHHhhhcCCC----CccHHHHHHHHHHHHhhc
Q psy14014        556 DNV-----------ANVRFNVAKTLQKIGPILE--TNVIQSQ---VKPALDKLNGDT----DVDVKYFAQEAISSIADS  614 (615)
Q Consensus       556 D~~-----------~~vr~~a~~~l~~l~~~~~--~~~~~~~---~~~~l~~l~~d~----d~~v~~~a~~a~~~~~~~  614 (615)
                      ...           ..+|..++.++..++...+  +..+.+.   +.+.+.....|.    +..||..|..+++.++..
T Consensus       734 ~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~  812 (861)
T 2bpt_A          734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM  812 (861)
T ss_dssp             CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence            321           4689999999999987766  2333333   344444445563    889999999999998753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=1.4e-33  Score=314.01  Aligned_cols=586  Identities=16%  Similarity=0.125  Sum_probs=442.4

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcch-------hhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCC-
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-------TRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGG-   84 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~-------~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~-   84 (615)
                      -+..+...+.++++..|..++..|+.+....++..       ..+.++|.+.+.+++++ .||..+..+++.++...+. 
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~  208 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA  208 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence            46777888999999999999999999998776541       14567788888888776 4999999999988864322 


Q ss_pred             -cchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcCCCcchhhhHHhhhhhhccCC
Q psy14014         85 -PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV  160 (615)
Q Consensus        85 -~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~  160 (615)
                       ..+.+.+++.+..++.|+++.||..++.++..+++..++ .+..   .+++.+.....+++..+|..|+..+..++...
T Consensus       209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~-~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~  287 (852)
T 4fdd_A          209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD-RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP  287 (852)
T ss_dssp             HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH-HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence             234557788888888999999999999999999987654 2222   36777777778888889999998877776542


Q ss_pred             C-----hhhHHHHHHHHHHHh-----------CC-----------CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHH
Q psy14014        161 T-----AGVKAELRSHFRNLC-----------QD-----------DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  213 (615)
Q Consensus       161 ~-----~~~~~~l~~~l~~l~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~  213 (615)
                      .     ......++|.+...+           +|           .+|.+|+.++.+++.++...++ ...+.++|.+.+
T Consensus       288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~  366 (852)
T 4fdd_A          288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKE  366 (852)
T ss_dssp             THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            1     123446677776665           44           5688999999999999998875 456678999999


Q ss_pred             hhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHH
Q psy14014        214 LAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQA  288 (615)
Q Consensus       214 ~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~  288 (615)
                      .++|+++.+|.+|+.+++.+++..++.  .+.+.++|.+..+++|+++.||.+++.+++.++...+..   .....+++.
T Consensus       367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~  446 (852)
T 4fdd_A          367 LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE  446 (852)
T ss_dssp             HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            999999999999999999998877642  345678999999999999999999999999999876532   234678899


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----hhhh
Q psy14014        289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----HNTV  364 (615)
Q Consensus       289 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~~~~  364 (615)
                      +...++|.++.||..|+.+++.++...++...  .+.+.+++.+...+++.+......+..+++.++...|.    ..+.
T Consensus       447 L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~--~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~  524 (852)
T 4fdd_A          447 LLKRILDSNKRVQEAACSAFATLEEEACTELV--PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI  524 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH--hHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence            99999999999999999999999988765432  35688888888888877777777888899888877664    3467


Q ss_pred             hhhHHHHHH---hhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHH----hh
Q psy14014        365 DHLLPLFLS---QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVE----LA  437 (615)
Q Consensus       365 ~~l~p~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~----~~  437 (615)
                      +.++|.+.+   .+.|.+++++ .++++++.++...|.. +.+..  -.+++.+...+.     +.+.......    ..
T Consensus       525 ~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~-~~~~~--~~i~~~~~~~l~-----~~l~~~~~~~~~~~~~  595 (852)
T 4fdd_A          525 QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSG-FLPYC--EPVYQRCVNLVQ-----KTLAQAMLNNAQPDQY  595 (852)
T ss_dssp             HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGG-GHHHH--HHHHHHHHHHHH-----HHHHHHHHHHHCTTTS
T ss_pred             HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHh-HHHHH--HHHHHHHHHHHH-----HHHHHHHHhhcCCccc
Confidence            788888874   5567677775 7889998888877753 22111  011111110000     0000000000    11


Q ss_pred             hcCCchHHHHHHHHhHHHHhhhChHhH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHH
Q psy14014        438 EDSKWRVRLAIIEYMPLLAGQLGVEFF----DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKV  511 (615)
Q Consensus       438 ~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l  511 (615)
                      ..++..+|..++..++.+++.+|.++.    .+.+++.++..+.|++..||..+..+++.++..++..+  +.+.++|.+
T Consensus       596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l  675 (852)
T 4fdd_A          596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL  675 (852)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            123556899999999999999987642    14679999999999999999999999999999887653  235688999


Q ss_pred             HhhhcCCCchHHHHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCC--chHHHHHHHHHHHHhHhhhh---hhHHhh
Q psy14014        512 VAMSRDQNYLHRMTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNV--ANVRFNVAKTLQKIGPILET---NVIQSQ  584 (615)
Q Consensus       512 ~~~~~d~~~~~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~--~~vr~~a~~~l~~l~~~~~~---~~~~~~  584 (615)
                      .+.+.++++.+|.++++++|.++...+.+  .+.+.+++.|.+.+++++  ..++.+++.++++++...+.   +...+.
T Consensus       676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~  755 (852)
T 4fdd_A          676 GTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQF  755 (852)
T ss_dssp             HHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHH
T ss_pred             HHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHH
Confidence            99888889999999999999999888754  245678888888877764  48999999999999987543   334445


Q ss_pred             HHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        585 VKPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       585 ~~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                      +.+.+..|..-.|.+.|..|..++-.+-
T Consensus       756 ~~~~~~~l~~~~d~~e~~~a~~~l~~li  783 (852)
T 4fdd_A          756 IRPWCTSLRNIRDNEEKDSAFRGICTMI  783 (852)
T ss_dssp             HHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHH
Confidence            5555666655567777888888876653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=8.5e-35  Score=336.45  Aligned_cols=576  Identities=12%  Similarity=0.145  Sum_probs=448.5

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCc--------
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGP--------   85 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~--------   85 (615)
                      +..+++.+.++++.+|..|++.|+.++..++++ ..+.+++.+...+.|++ .+|..++.+|+.++..++..        
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~  128 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  128 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence            566778899999999999999999999877664 67788888888777766 59999999999998766543        


Q ss_pred             chhhhchHHHhhhhc-CchhHHHHHHHHHHHHHHhhcChhH--HhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh
Q psy14014         86 EYVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (615)
Q Consensus        86 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  162 (615)
                      .+++.++|.|...+. +++..+|..|+.++..+++..++..  ..+.+++.+.....++...+|..++..++.+....++
T Consensus       129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence            378999999998887 4788999999999999997665411  2345677777777777788999999999999888766


Q ss_pred             hhHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        163 GVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       163 ~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      .....+++.+...+. +.++.+|..++++++.++...+..  .+...++|.+.+.++|+++.+|..++.+++.+++..+.
T Consensus       209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            555556665555443 334678999999999999987753  23568999999999999999999999999999998876


Q ss_pred             h--hHHHhHHHHHHHhcC-------------------------------------CCChHHHHHHHHHHHHHHHHhCc--
Q psy14014        240 S--DVEQLVMPTLRQCSG-------------------------------------DTSWRVRYMVADKFTDLQKAVGP--  278 (615)
Q Consensus       240 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~~~~~l~~l~~~~~~--  278 (615)
                      +  .+.+.++|.+.+.+.                                     |.+|.+|.+++.+++.++...+.  
T Consensus       289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~  368 (1230)
T 1u6g_C          289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  368 (1230)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence            4  355667777655432                                     23589999999999999986554  


Q ss_pred             cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc-----------------chhHHHHHhhHHHHHHhhCCCCH
Q psy14014        279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY-----------------NQENIIMTYILPYVKDLVADPNQ  341 (615)
Q Consensus       279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-----------------~~~~~~~~~l~p~l~~~~~d~~~  341 (615)
                      ......++|.+...+.|.+++||..++.++..++...+..                 ..-..+.+.++|.+.+.++|++|
T Consensus       369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~  448 (1230)
T 1u6g_C          369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV  448 (1230)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence            2234578899999999999999999999999988765431                 01123566778888888999999


Q ss_pred             HHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCCh--hHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhh
Q psy14014        342 HVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECP--EVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAG  417 (615)
Q Consensus       342 ~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~  417 (615)
                      .+|.+++.+++.++...+.  ..+.+.++|.+...++|.++  .++..++..+..+.+..+.+.+...      ++    
T Consensus       449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~------l~----  518 (1230)
T 1u6g_C          449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH------VQ----  518 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHH------HT----
T ss_pred             HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhH------HH----
Confidence            9999999999999877543  23567889999999999765  8999999988888766654432221      11    


Q ss_pred             ccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---------HhHHHHHHHHHHHhc--CCcchHHHHH
Q psy14014        418 QLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---------EFFDEKLNALCMTWL--VDHVYAIREA  486 (615)
Q Consensus       418 ~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vR~~  486 (615)
                              ..+  |.+...++|++|++|..++..++.+++.+|.         ..+.+.++|.++..+  .|.+..+|..
T Consensus       519 --------~ll--p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~  588 (1230)
T 1u6g_C          519 --------ALV--PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKER  588 (1230)
T ss_dssp             --------TTH--HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHH
T ss_pred             --------HHH--HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence                    111  6777888999999999999999999998876         235678999999988  7888999999


Q ss_pred             HHHHHHHHHHHhChHHh--hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---ChhhHHHhhHHHHHhhCCCCCchH
Q psy14014        487 ATLNLKKLVEQFGSEWA--QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GPTVTANFLLPTVLNMAGDNVANV  561 (615)
Q Consensus       487 a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~D~~~~v  561 (615)
                      |+.+++.++...|..+.  ...+++.+.+.+.+  ...|..++++++.++...   +...+.+.++|.+...+.|.+..+
T Consensus       589 a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~  666 (1230)
T 1u6g_C          589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRAL  666 (1230)
T ss_dssp             HHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred             HHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence            99999999999887532  24456666555543  347999999999988643   224567889999999999999999


Q ss_pred             HHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---cCCCCccHHHHHHHHHHHHhh
Q psy14014        562 RFNVAKTLQKIGPILETNVIQSQVKPALDKL---NGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       562 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      |.+++.+++.++...+.....+.+.+++..+   .+|.|.+++..+..++..+.+
T Consensus       667 r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~  721 (1230)
T 1u6g_C          667 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK  721 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence            9999999999998876544456677777654   578899999999988887753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=7.6e-33  Score=310.65  Aligned_cols=592  Identities=14%  Similarity=0.105  Sum_probs=444.5

Q ss_pred             HHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc--H-HHHHHHHHHhccccCCCCC---cchhhhc
Q psy14014         18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--D-EVLLALAEQLGTFTPNVGG---PEYVHCL   91 (615)
Q Consensus        18 ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~--~-~vr~~a~~~l~~l~~~~~~---~~~~~~l   91 (615)
                      ++..+.++++.. ..++..++.++...++...|++++|.+.+.++++  + .+|..+..+++.+.+...+   ..+.+.+
T Consensus        95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l  173 (876)
T 1qgr_A           95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI  173 (876)
T ss_dssp             HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred             HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence            667788888778 8999999999988777558999999999988776  6 4999999999988865432   3456778


Q ss_pred             hHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChh----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh-
Q psy14014         92 LPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV-  164 (615)
Q Consensus        92 ~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-  164 (615)
                      ++.+.+.+.++  +..+|..|+.++..++..++..    .....+++.+.....+++..+|..++.++..+.....+.. 
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~  253 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            88888888776  6899999999999988765432    1223578888888878788899999988887765543322 


Q ss_pred             --HH-HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-----------------------hhhHhhhHHHHHHhhc--
Q psy14014        165 --KA-ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-----------------------DYLKTDIIPMFVNLAQ--  216 (615)
Q Consensus       165 --~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----------------------~~~~~~ll~~l~~~~~--  216 (615)
                        .. .+++.+.....+.++.||..+++.+..+++....                       ......++|.+.+.+.  
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~  333 (876)
T 1qgr_A          254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence              23 6778888888899999999999999988875310                       0112467777777664  


Q ss_pred             -----cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHH
Q psy14014        217 -----DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQA  288 (615)
Q Consensus       217 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~  288 (615)
                           |+++.+|.+|..++..++..+++ ...+.++|.+...+.|++|++|.+++.+++.++...+.+   .....++|.
T Consensus       334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~  412 (876)
T 1qgr_A          334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT  412 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                 45688999999999999999885 456788999999999999999999999999998765522   123568999


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc---------
Q psy14014        289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG---------  359 (615)
Q Consensus       289 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g---------  359 (615)
                      +...++|+++.||..|+.+++.++..+++......+.+.++|.+...++|. +.||..++.+++.++...+         
T Consensus       413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~  491 (876)
T 1qgr_A          413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ  491 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            999999999999999999999999987653211235678889988888885 9999999999999988765         


Q ss_pred             -------chhhhhhhHHHHHHhhcCC---ChhHHHHHHHhhhHhhhhhchhHHH--------------------------
Q psy14014        360 -------KHNTVDHLLPLFLSQLKDE---CPEVRLNIISNLDCVNEVIGIQQWR--------------------------  403 (615)
Q Consensus       360 -------~~~~~~~l~p~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~--------------------------  403 (615)
                             -..+.+.++|.+.+.+.+.   +..+|..++++++.++...|.+...                          
T Consensus       492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~  571 (876)
T 1qgr_A          492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST  571 (876)
T ss_dssp             CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred             ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence                   1245677899999988764   4689999999988887765432100                          


Q ss_pred             -------H-HHHHHhhhhhhhhccc-cc---hhhhhhhhHHHHHhhhcCC--chHHHHHHHHhHHHHhhhChHh--HHHH
Q psy14014        404 -------V-RLAIIEYMPLLAGQLG-VE---FFDEKLNALSIVELAEDSK--WRVRLAIIEYMPLLAGQLGVEF--FDEK  467 (615)
Q Consensus       404 -------~-~~~i~~~l~~l~~~~~-~~---~~~~~l~~~~i~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~--~~~~  467 (615)
                             . +..+...+..+...+| ..   +....+  |.+...+++..  +.+|..++.+++.++...|..+  +.+.
T Consensus       572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~--~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  649 (876)
T 1qgr_A          572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVM--ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA  649 (876)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHH--HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH--HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                   0 0011223333444444 22   222222  56666666654  6899999999999998887654  4577


Q ss_pred             HHHHHHHhcCCc-chHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcC--CCchHHHHHHHHHHHHHhhhChhh-
Q psy14014        468 LNALCMTWLVDH-VYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRD--QNYLHRMTCLFCINVLAEACGPTV-  541 (615)
Q Consensus       468 l~~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d--~~~~~R~~a~~~l~~l~~~~~~~~-  541 (615)
                      ++|.+...+.+. ++.+|..|+.+++.++..+|...  +.+.+++.+.+.+.+  .+..+|..++.+++.++..+|+++ 
T Consensus       650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~  729 (876)
T 1qgr_A          650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK  729 (876)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH
Confidence            889999998887 88999999999999999887643  235688888887776  467899999999999999887764 


Q ss_pred             -HHHhhHHHHHhhCCCCC-----------chHHHHHHHHHHHHhHhhhh---------hh---HHhhHHHHHhhhcCCC-
Q psy14014        542 -TANFLLPTVLNMAGDNV-----------ANVRFNVAKTLQKIGPILET---------NV---IQSQVKPALDKLNGDT-  596 (615)
Q Consensus       542 -~~~~i~~~l~~~~~D~~-----------~~vr~~a~~~l~~l~~~~~~---------~~---~~~~~~~~l~~l~~d~-  596 (615)
                       +.+.++|.+.+.+.++.           ..+|..+..++..++...+.         ..   +.+.+.+.+..+..|+ 
T Consensus       730 ~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  809 (876)
T 1qgr_A          730 KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDED  809 (876)
T ss_dssp             GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence             35678888887766442           27999999999988877653         12   2334445555555676 


Q ss_pred             -CccHHHHHHHHHHHHhhc
Q psy14014        597 -DVDVKYFAQEAISSIADS  614 (615)
Q Consensus       597 -d~~v~~~a~~a~~~~~~~  614 (615)
                       +..||..|..+++.+.+.
T Consensus       810 ~~~~vr~~a~~~l~~l~~~  828 (876)
T 1qgr_A          810 HTDGVVACAAGLIGDLCTA  828 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence             789999999999998753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=4.4e-32  Score=303.83  Aligned_cols=565  Identities=13%  Similarity=0.128  Sum_probs=428.6

Q ss_pred             ccHHHHHHHHhcHHHHH---------------HH-hCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcch
Q psy14014         25 EDVQLRLNSIKKLSTIA---------------LA-LGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEY   87 (615)
Q Consensus        25 ~d~~~R~~a~~~l~~~~---------------~~-~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~   87 (615)
                      .++.+|..|...|....               .. ++++ .+..+.+.+.+.+.+++ .+|..++.+++.++........
T Consensus        53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~-~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~  131 (861)
T 2bpt_A           53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPE-AKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA  131 (861)
T ss_dssp             SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred             CChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHH-HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc
Confidence            36778887777766652               22 4333 55556666666666655 4999999999998864322246


Q ss_pred             hhhchHHHhhhhcCc-hhHHHHHHHHHHHHHHhhcChh-----HHhhhHHHHHHHhhcCC--CcchhhhHHhhhhhhccC
Q psy14014         88 VHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPH-----DLEAHFVPLVQRLASGD--WFTSRTSACGLFSVCYPR  159 (615)
Q Consensus        88 ~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~l~~~~--~~~~r~~a~~~l~~~~~~  159 (615)
                      |+.++|.|...+.++ ++.+|..++.++..+++.++++     ...+.+++.+.....++  +..+|..++..++.+...
T Consensus       132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~  211 (861)
T 2bpt_A          132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            889999999998888 8999999999999999877643     23445777777777776  678999999988876554


Q ss_pred             CChh-----hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHh-hhHHHHHHhhccCchhHHHHHHHHHH
Q psy14014        160 VTAG-----VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKT-DIIPMFVNLAQDEQDSVRLLAVEACV  231 (615)
Q Consensus       160 ~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~-~ll~~l~~~~~d~~~~vr~~a~~~l~  231 (615)
                      +...     .++.+++.+...+.++++.+|+.++++++.++...+..  .... .+++.+...++|.++.+|..|++.+.
T Consensus       212 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~  291 (861)
T 2bpt_A          212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWS  291 (861)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            4322     24568888888889999999999999999999877652  2334 78888888889999999999999999


Q ss_pred             HHHhhcCh-------------------hhHHHhHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHhCccchhhhH
Q psy14014        232 SIASLLSQ-------------------SDVEQLVMPTLRQCSG-------DTSWRVRYMVADKFTDLQKAVGPEITKTDL  285 (615)
Q Consensus       232 ~l~~~~~~-------------------~~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  285 (615)
                      .+++....                   ....+.++|.+...+.       |.+|.+|.++..+++.++..++.. ....+
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~-~~~~l  370 (861)
T 2bpt_A          292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPV  370 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHH
T ss_pred             HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh-HHHHH
Confidence            98876421                   1223567788777665       346899999999999999988854 35678


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----h
Q psy14014        286 VQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----H  361 (615)
Q Consensus       286 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~  361 (615)
                      ++.+.+.+.+.++.+|.+|+.+++.++....+... ..+.+.++|.+...+.|+++.||.+++++++.++...+.    .
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR-TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            89999999999999999999999999876542211 245678899999999999999999999999999988764    3


Q ss_pred             hhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch---hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhh
Q psy14014        362 NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI---QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAE  438 (615)
Q Consensus       362 ~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~  438 (615)
                      .+.+.++|.+.+.++|+ +.||..++.++..+.+..++   ..+.                  .|+.+.+  +.+...++
T Consensus       450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~------------------~~~~~il--~~L~~~l~  508 (861)
T 2bpt_A          450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY------------------NFYPALV--DGLIGAAN  508 (861)
T ss_dssp             TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG------------------GGHHHHH--HHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH------------------HHHHHHH--HHHHHHHh
Confidence            45778899999999886 89999999999888766541   1110                  1121222  45666665


Q ss_pred             --cCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHHHHhC
Q psy14014        439 --DSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVD---------------HVYAIREAATLNLKKLVEQFG  499 (615)
Q Consensus       439 --~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vR~~a~~~l~~l~~~~~  499 (615)
                        |.++.+|..++++++.++...|.+.  +.+.++|.+++.+.+               ....+|..++.+++.++..+|
T Consensus       509 ~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~  588 (861)
T 2bpt_A          509 RIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP  588 (861)
T ss_dssp             CSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             CcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence              3448999999999999999888653  345677777666542               356789999999999999988


Q ss_pred             hHH--hhhchhHHHHhhhcCCCc-hHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        500 SEW--AQSTVIPKVVAMSRDQNY-LHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       500 ~~~--~~~~i~~~l~~~~~d~~~-~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      ...  +.+.+++.+...+++.++ .+|..++.+++.++...+..+  +.+.++|.+...++++++.+|..++.+++.+..
T Consensus       589 ~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          589 SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            742  345688888888888877 899999999999998887654  356789999998899999999999999999998


Q ss_pred             hhhhh--hHHhhHHHHHhhhcCCC--CccHHHHHHHHHHHHhh
Q psy14014        575 ILETN--VIQSQVKPALDKLNGDT--DVDVKYFAQEAISSIAD  613 (615)
Q Consensus       575 ~~~~~--~~~~~~~~~l~~l~~d~--d~~v~~~a~~a~~~~~~  613 (615)
                      ..+..  .+...+.+.+...+.++  |.++|..+..+++.++.
T Consensus       669 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~  711 (861)
T 2bpt_A          669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             HhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence            77642  12233333333333343  58999999999998875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=5.6e-33  Score=321.29  Aligned_cols=575  Identities=13%  Similarity=0.136  Sum_probs=446.1

Q ss_pred             cchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhC---cchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcch
Q psy14014         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG---QERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEY   87 (615)
Q Consensus        12 ~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~---~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~   87 (615)
                      -+.+..+++.+.|+|++.|..|...|......-.   .+.....+++.+.+.+.|++ .+|.+++.+|+.+++.++ +++
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~   83 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQ   83 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHH
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHH
Confidence            4578999999999999999999999887643211   11234577787777777766 599999999999998664 367


Q ss_pred             hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--------HHhhhHHHHHHHhhcC-CCcchhhhHHhhhhhhcc
Q psy14014         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--------DLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYP  158 (615)
Q Consensus        88 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~l~~~-~~~~~r~~a~~~l~~~~~  158 (615)
                      ++.+++.+...+.|+++.+|..|+.++..++..+++.        ...+.++|.+.....+ ++..+|..|+..+..++.
T Consensus        84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~  163 (1230)
T 1u6g_C           84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  163 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            7888888888888999999999999999999998865        2466789999888874 677899999988888774


Q ss_pred             CCCh---hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC-chhHHHHHHHHHHHHH
Q psy14014        159 RVTA---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIA  234 (615)
Q Consensus       159 ~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~  234 (615)
                      ..++   ...+.+++.+...+.|+++.||..++.+++.++...+.+. ...++|.+.+.+.+. ++.+|..++++++.++
T Consensus       164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~  242 (1230)
T 1u6g_C          164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  242 (1230)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence            3322   2457888889999999999999999999999998776543 455677776666544 3578999999999999


Q ss_pred             hhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcC---------------
Q psy14014        235 SLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKD---------------  295 (615)
Q Consensus       235 ~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------  295 (615)
                      ...+..  .+.+.++|.+.+.+.|+++.+|..++.+++.++..++.+.  ..+.++|.+.+.+.+               
T Consensus       243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~  322 (1230)
T 1u6g_C          243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA  322 (1230)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence            988763  2345689999999999999999999999999999887654  345677777665531               


Q ss_pred             ----------------------CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy14014        296 ----------------------SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG  353 (615)
Q Consensus       296 ----------------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~  353 (615)
                                            ..++||.+|+.+++.++...+..  -..+.+.++|.+...+.|.++.||..++.++..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~  400 (1230)
T 1u6g_C          323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM--LPEFYKTVSPALISRFKEREENVKADVFHAYLS  400 (1230)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTT--HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred             ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH--HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence                                  12568999999999999855431  125678888999888999999999999999988


Q ss_pred             hchhhcc---------------------hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhh
Q psy14014        354 LSPILGK---------------------HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM  412 (615)
Q Consensus       354 l~~~~g~---------------------~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l  412 (615)
                      +....|.                     ..+.+.++|.+.+.++++++.+|..++..++.+....+.. +.         
T Consensus       401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-l~---------  470 (1230)
T 1u6g_C          401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-LT---------  470 (1230)
T ss_dssp             HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT-TG---------
T ss_pred             HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh-hH---------
Confidence            8776542                     2345667788888899999999999999998887653211 00         


Q ss_pred             hhhhhccccchhhhhhhhHHHHHhhhcCCc--hHHHHHHHHhHHHHhhhChHh---HHHHHHHHHHHhcCCcchHHHHHH
Q psy14014        413 PLLAGQLGVEFFDEKLNALSIVELAEDSKW--RVRLAIIEYMPLLAGQLGVEF---FDEKLNALCMTWLVDHVYAIREAA  487 (615)
Q Consensus       413 ~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~--~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vR~~a  487 (615)
                               .++.+.+  |.+.+.+.|+++  .+|..++..+..+....|++.   +.+.++|.++..+.|+++.+|..+
T Consensus       471 ---------~~l~~ll--~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~a  539 (1230)
T 1u6g_C          471 ---------QHIPVLV--PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA  539 (1230)
T ss_dssp             ---------GGHHHHH--HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHH
T ss_pred             ---------HHHHHHH--HHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHH
Confidence                     1111112  677888888876  899999999999988888764   445688999999999999999999


Q ss_pred             HHHHHHHHHHhCh-------H--HhhhchhHHHHhhh--cCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhC
Q psy14014        488 TLNLKKLVEQFGS-------E--WAQSTVIPKVVAMS--RDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMA  554 (615)
Q Consensus       488 ~~~l~~l~~~~~~-------~--~~~~~i~~~l~~~~--~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~  554 (615)
                      +.+++.+++.+|+       .  .+.+.++|.+...+  .|.++.+|..++.++|.++...|...  +.+.++|.+...+
T Consensus       540 l~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l  619 (1230)
T 1u6g_C          540 LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERL  619 (1230)
T ss_dssp             HHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHh
Confidence            9999999998876       1  24467889888887  77889999999999999999887653  2366777777766


Q ss_pred             CCCCchHHHHHHHHHHHHhHhhh---hhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        555 GDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       555 ~D~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .++  ..|..++++++.+.....   ...+.+.+.+.+.....|++..+|.++..+++.+..
T Consensus       620 ~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~  679 (1230)
T 1u6g_C          620 KNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIK  679 (1230)
T ss_dssp             TSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred             ccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            643  588899999998875332   134456677777777899999999999999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=6.5e-31  Score=294.95  Aligned_cols=595  Identities=15%  Similarity=0.127  Sum_probs=434.4

Q ss_pred             HHHHHHHhcCc--cHHHHHHHHhcHHHHHHHhCcc---hhhccchhhhhhhcCCc--H-HHHHHHHHHhccccCCCCCc-
Q psy14014         15 IAVLIDELKNE--DVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDE--D-EVLLALAEQLGTFTPNVGGP-   85 (615)
Q Consensus        15 i~~ll~~l~s~--d~~~R~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~~~--~-~vr~~a~~~l~~l~~~~~~~-   85 (615)
                      +..++..+.++  ++..|..+++.|..+...++++   ...+.+++.+.+.+.++  + .+|..+.++++.++..++.. 
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~  209 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667778888  9999999999999999876543   24456777777777765  3 59999999999887654321 


Q ss_pred             ---chhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccC
Q psy14014         86 ---EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (615)
Q Consensus        86 ---~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~  159 (615)
                         ...+.+++.+..++.++++.+|..+++++..++...++   ..+...+++.+.....+++..+|..++..+..+...
T Consensus       210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence               11134777788888888899999999999999987664   223336777777777777778888887666555422


Q ss_pred             C---------------------Chh---hHHHHHHHHHHHhC-------CCChHHHHHHHHhHHHHHHHhchhhhHhhhH
Q psy14014        160 V---------------------TAG---VKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVVEVDYLKTDII  208 (615)
Q Consensus       160 ~---------------------~~~---~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll  208 (615)
                      .                     ...   ..+.+++.+...+.       |.+|.+|+.++.+++.++...+. ...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l  368 (876)
T 1qgr_A          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred             HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence            1                     011   22556676666653       46799999999999999998875 3466788


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc----ch
Q psy14014        209 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE----IT  281 (615)
Q Consensus       209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~  281 (615)
                      |.+...++|++|.+|.+|+.+++.+++..+++   .+.+.++|.+...++|+++.||..++.+++.++...+..    ..
T Consensus       369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            99999999999999999999999999887743   345668999999999999999999999999999887642    34


Q ss_pred             hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc-------cc-----chhHHHHHhhHHHHHHhhCCC---CHHHHHH
Q psy14014        282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD-------AY-----NQENIIMTYILPYVKDLVADP---NQHVKSA  346 (615)
Q Consensus       282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-------~~-----~~~~~~~~~l~p~l~~~~~d~---~~~vR~~  346 (615)
                      ...+++.+...+.|. +.||..++.++..++...+       +.     ..-..+.+.++|.+...+.+.   +..+|..
T Consensus       449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~  527 (876)
T 1qgr_A          449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence            567889999999886 8999999999999998754       10     001135677888888887764   4688988


Q ss_pred             HHHHHHhhchhhcch--hhhhhhHHHHHHhhc-----------CCC----hhHHHHHHHhhhHhhhhhc-h---------
Q psy14014        347 LASVIMGLSPILGKH--NTVDHLLPLFLSQLK-----------DEC----PEVRLNIISNLDCVNEVIG-I---------  399 (615)
Q Consensus       347 ~~~~l~~l~~~~g~~--~~~~~l~p~l~~~l~-----------d~~----~~vr~~a~~~l~~l~~~~~-~---------  399 (615)
                      +.++++.++...|.+  .+.+.++|.+.+.+.           +.+    +++|..++.+++.+....+ .         
T Consensus       528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l  607 (876)
T 1qgr_A          528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV  607 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence            999999888877753  234456666655443           222    6788888877777665554 1         


Q ss_pred             ----------hH--HHHHHHHHhhhhhhhhccccch---hhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhhChHh
Q psy14014        400 ----------QQ--WRVRLAIIEYMPLLAGQLGVEF---FDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQLGVEF  463 (615)
Q Consensus       400 ----------~~--~~~~~~i~~~l~~l~~~~~~~~---~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~  463 (615)
                                ..  +..+..+...+..++...|..|   +.. +. |.+...+.+. ++.+|..++.+++.++...|..+
T Consensus       608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~-~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~  685 (876)
T 1qgr_A          608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA-FK-PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI  685 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH-HH-HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH-HH-HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence                      00  0111123334444444444433   223 22 6777777776 89999999999999999888643


Q ss_pred             --HHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCC-----------chHHHHH
Q psy14014        464 --FDEKLNALCMTWLVD--HVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQN-----------YLHRMTC  526 (615)
Q Consensus       464 --~~~~l~~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~-----------~~~R~~a  526 (615)
                        +.+.+++.+.+.+.+  .+..+|..++.+++.++..+|.++  +.+.++|.+.+.+.++.           ..+|..+
T Consensus       686 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~  765 (876)
T 1qgr_A          686 IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESC  765 (876)
T ss_dssp             HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Confidence              346788888888876  457899999999999999988764  23557777777665442           2789999


Q ss_pred             HHHHHHHHhhhCh---------hh---HHHhhHHHHHhhCCCC--CchHHHHHHHHHHHHhHhhhh-hh--H--HhhHHH
Q psy14014        527 LFCINVLAEACGP---------TV---TANFLLPTVLNMAGDN--VANVRFNVAKTLQKIGPILET-NV--I--QSQVKP  587 (615)
Q Consensus       527 ~~~l~~l~~~~~~---------~~---~~~~i~~~l~~~~~D~--~~~vr~~a~~~l~~l~~~~~~-~~--~--~~~~~~  587 (615)
                      +.+++.+....+.         ..   +.+.+++.+.....|+  +..||..++.+|+.++...+. ..  +  ...+.+
T Consensus       766 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~  845 (876)
T 1qgr_A          766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHE  845 (876)
T ss_dssp             HHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHH
Confidence            9999988876543         12   2345666676666777  789999999999999988865 21  1  234566


Q ss_pred             HHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        588 ALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       588 ~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ++.....|++++||..|..|++.+++
T Consensus       846 ll~~~l~~~~~~~r~~a~~a~~~~~~  871 (876)
T 1qgr_A          846 LLTEGRRSKTNKAKTLARWATKELRK  871 (876)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence            66645578999999999999999875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.95  E-value=2e-24  Score=228.86  Aligned_cols=518  Identities=14%  Similarity=0.149  Sum_probs=361.1

Q ss_pred             CCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCc
Q psy14014          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGP   85 (615)
Q Consensus         7 ~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~   85 (615)
                      +.+..-..+..+.+.++++|...|..+++.+-.+ ...|.+  ...+.+.+.+++.+++ ++|+.+...+..+++.  .+
T Consensus         7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~   81 (591)
T 2vgl_B            7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QP   81 (591)
T ss_dssp             TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SH
T ss_pred             cccccCChHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--Cc
Confidence            3333345688889999999999888888777754 345555  2345555666777766 5888877777666542  23


Q ss_pred             chhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhH
Q psy14014         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK  165 (615)
Q Consensus        86 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~  165 (615)
                      +....+++.+.+.+.++++.+|..|+.+++.+.   . .                                      ++.
T Consensus        82 e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~-~--------------------------------------~~~  119 (591)
T 2vgl_B           82 DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---V-D--------------------------------------KIT  119 (591)
T ss_dssp             HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---S-G--------------------------------------GGH
T ss_pred             hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---h-H--------------------------------------HHH
Confidence            344445667777788889999988887776542   1 1                                      223


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hH
Q psy14014        166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DV  242 (615)
Q Consensus       166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~  242 (615)
                      +.+.+.+.+++.|+++.||+.|+.++..+++..+.......++|.+.++++|+++.|+..|+.++..++..-+..   ..
T Consensus       120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l  199 (591)
T 2vgl_B          120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL  199 (591)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence            334455677888999999999999999998854432222468899999999999999999999999988765432   12


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc-ccchh
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD-AYNQE  321 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~  321 (615)
                      .+..++.+.+.+.+.++..+..+++.++.+...  .......+++.+..++++.++.|+..|++++..+...++ ....-
T Consensus       200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~  277 (591)
T 2vgl_B          200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY  277 (591)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred             cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence            233445555555566766777777766554321  111235788888999999999999999999998875441 11111


Q ss_pred             HHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH
Q psy14014        322 NIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ  401 (615)
Q Consensus       322 ~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  401 (615)
                      ......+.+.+..+. ++++.+|..++.+++.+....+ +.+.+++. .+....+| +..||..+++.+..+...-+   
T Consensus       278 ~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~~n---  350 (591)
T 2vgl_B          278 NMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQEIK-VFFVKYND-PIYVKLEKLDIMIRLASQAN---  350 (591)
T ss_dssp             HHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTCTT-TTSCCTTS-CHHHHHHHHHHHHHTCCSST---
T ss_pred             HHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHHHH-hheeccCC-hHHHHHHHHHHHHHHCChhh---
Confidence            123456667666665 4889999999999999876532 22222221 22222334 48999999988776543221   


Q ss_pred             HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcch
Q psy14014        402 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVY  481 (615)
Q Consensus       402 ~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  481 (615)
                      ...      .+                  +.+.+.+++.++.+|..++.+++.++..++..  .+.+++.+++++.+...
T Consensus       351 v~~------iv------------------~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~  404 (591)
T 2vgl_B          351 IAQ------VL------------------AELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVN  404 (591)
T ss_dssp             HHH------HH------------------HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCH
T ss_pred             HHH------HH------------------HHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccch
Confidence            111      12                  45667778889999999999999999876532  35678888999999988


Q ss_pred             HHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCch
Q psy14014        482 AIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVAN  560 (615)
Q Consensus       482 ~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~  560 (615)
                      .++..+...+..+......  ....+++.|.+.+. ...+.+|..+++++|+.+.....   .+.++..+.+...+..+.
T Consensus       405 ~v~~e~i~~l~~ii~~~p~--~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~  479 (591)
T 2vgl_B          405 YVVQEAIVVIRDIFRKYPN--KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQ  479 (591)
T ss_dssp             HHHHHHHHHHHHHHHHSCS--SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHH
Confidence            8999999999999877543  23457888888776 46788999999999998876543   234556666666778899


Q ss_pred             HHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCC-CCccHHHHHHHHHHHHh
Q psy14014        561 VRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD-TDVDVKYFAQEAISSIA  612 (615)
Q Consensus       561 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d-~d~~v~~~a~~a~~~~~  612 (615)
                      ||..++.++..+....+.. ..+.+..++.....| .|.|||+.|.+.++.+.
T Consensus       480 vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~  531 (591)
T 2vgl_B          480 VQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS  531 (591)
T ss_dssp             HHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence            9999999999998765432 234566677776566 78899999999887664

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.93  E-value=7.5e-23  Score=211.88  Aligned_cols=427  Identities=15%  Similarity=0.129  Sum_probs=271.7

Q ss_pred             chhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHH
Q psy14014         53 LIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP  132 (615)
Q Consensus        53 ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  132 (615)
                      +...|....+.++++|+.|.+.|..+... ..+.++..++.++..  .+.+..+|..|...|+++........-..    
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~----   75 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQ----   75 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHH----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHH----
Confidence            34445555555556777777666654320 012233333333321  12357888888888877664432111000    


Q ss_pred             HHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHH
Q psy14014        133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFV  212 (615)
Q Consensus       133 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~  212 (615)
                                          ....+..++++.+..+...+...+.++++.+ ..++.+++.++....++..|+.++|.+.
T Consensus        76 --------------------~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~  134 (462)
T 1ibr_B           76 --------------------YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLV  134 (462)
T ss_dssp             --------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHH
T ss_pred             --------------------HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHH
Confidence                                0112234566677778887888888888889 9999999999988766556889999999


Q ss_pred             HhhccC--chhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHH
Q psy14014        213 NLAQDE--QDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQ  287 (615)
Q Consensus       213 ~~~~d~--~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  287 (615)
                      +.++++  ++.+|..++.++..+++....+   .+.+                                       .+++
T Consensus       135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~---------------------------------------~ll~  175 (462)
T 1ibr_B          135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN---------------------------------------EILT  175 (462)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH---------------------------------------HHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH---------------------------------------HHHH
Confidence            999888  8899999999999988765321   1122                                       3444


Q ss_pred             HHHHhhcCC--cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhh
Q psy14014        288 AFQMLLKDS--EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNT  363 (615)
Q Consensus       288 ~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~  363 (615)
                      .+...++|+  ++.||..|++++..++..+..........+.+++.+.+...++++.+|..+++++..++...+.  ..+
T Consensus       176 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~  255 (462)
T 1ibr_B          176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY  255 (462)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444  3455555555555443322211100011233567777788999999999999999999877654  234


Q ss_pred             hh-hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHh----hhhhhhhccccchh---hhhhhhHHHHH
Q psy14014        364 VD-HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIE----YMPLLAGQLGVEFF---DEKLNALSIVE  435 (615)
Q Consensus       364 ~~-~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~----~l~~l~~~~~~~~~---~~~l~~~~i~~  435 (615)
                      .+ .++|.+...+++.+++||..+++.+..+.+...    ......-+    .-+..  .....++   ...+. |.+.+
T Consensus       256 ~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-p~l~~  328 (462)
T 1ibr_B          256 MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM----DLAIEASEAAEQGRPPE--HTSKFYAKGALQYLV-PILTQ  328 (462)
T ss_dssp             TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH----HHHHHHCCTTCSSSCSS--CCCCCHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH----HHHHhcccccccCCCcc--chhHHHHHHHhhhcc-HHHHH
Confidence            55 788888888999999999999998887765320    00000000    00000  0000011   01111 44544


Q ss_pred             hhh-------cCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH---hhh
Q psy14014        436 LAE-------DSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW---AQS  505 (615)
Q Consensus       436 ~~~-------~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~  505 (615)
                      .+.       +.+|.+|..+..++..++..+|. ...+.++|.+...+.+++|.+|.+|+.+++.++..++++.   ...
T Consensus       329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~  407 (462)
T 1ibr_B          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI  407 (462)
T ss_dssp             HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTT
T ss_pred             HHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            442       35789999999999999988884 4567788888888899999999999999999987554321   235


Q ss_pred             chhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhC
Q psy14014        506 TVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMA  554 (615)
Q Consensus       506 ~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~  554 (615)
                      .++|.+...++|+++.+|..|+++++.+++..++..    +.+.++|.+.+.+
T Consensus       408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L  460 (462)
T 1ibr_B          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL  460 (462)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence            688888888899999999999999999988776532    3444555555443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=8.5e-22  Score=207.65  Aligned_cols=480  Identities=14%  Similarity=0.084  Sum_probs=320.4

Q ss_pred             hccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhh
Q psy14014         75 LGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS  154 (615)
Q Consensus        75 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~  154 (615)
                      ++.+..+.++..+....+|.|..++.++++.+|..|+.++..++..-+...   .++       .               
T Consensus         2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~---~~~-------~---------------   56 (529)
T 1jdh_A            2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIM-------R---------------   56 (529)
T ss_dssp             CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH---HHH-------T---------------
T ss_pred             hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHH---HHH-------h---------------
Confidence            455666666666667788889999999999999999999999876432110   000       0               


Q ss_pred             hhccCCChhhHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHH
Q psy14014        155 VCYPRVTAGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACV  231 (615)
Q Consensus       155 ~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~  231 (615)
                                ....++.+.+++. ++++.+|..++.+|..++..-..  .......+|.+.++++++++.++..|+.++.
T Consensus        57 ----------~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~  126 (529)
T 1jdh_A           57 ----------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH  126 (529)
T ss_dssp             ----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ----------CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                      0112233344443 45888999999998887653211  2234468899999999999999999999999


Q ss_pred             HHHhhcChh--h-HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCcHH-HHHHH
Q psy14014        232 SIASLLSQS--D-VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSEAE-VRAAA  304 (615)
Q Consensus       232 ~l~~~~~~~--~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~-vr~~a  304 (615)
                      .++..-+..  . .....+|.+.+++.++++.+|..++.++..++..-   .........++.+..++++.+++ ++..+
T Consensus       127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a  206 (529)
T 1jdh_A          127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT  206 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence            998765432  1 23568999999999999999999999998876421   01112235678888888766544 55566


Q ss_pred             HHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHH
Q psy14014        305 ANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL  384 (615)
Q Consensus       305 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~  384 (615)
                      ...+..+..  .+..+........+|.+..++.+.++.++..+++++..++............+|.+.+++.+++++++.
T Consensus       207 ~~~L~~l~~--~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  284 (529)
T 1jdh_A          207 SRVLKVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT  284 (529)
T ss_dssp             HHHHHHHTT--STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHhc--CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHH
Confidence            777776664  222233333456889999999999999999999999999876443333456899999999999999999


Q ss_pred             HHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc--CCchHHHHHHHHhHHHHhhhCh-
Q psy14014        385 NIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED--SKWRVRLAIIEYMPLLAGQLGV-  461 (615)
Q Consensus       385 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~--~~~~vr~~~~~~l~~l~~~~~~-  461 (615)
                      .++.+|..+....  .......  .+.               ... |.+.+++.+  .++.+|..++.++..++...+. 
T Consensus       285 ~a~~~L~~L~~~~--~~~~~~~--~~~---------------~~v-~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~  344 (529)
T 1jdh_A          285 CAAGILSNLTCNN--YKNKMMV--CQV---------------GGI-EALVRTVLRAGDREDITEPAICALRHLTSRHQEA  344 (529)
T ss_dssp             HHHHHHHHHTTTC--HHHHHHH--HHT---------------THH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred             HHHHHHHHHhcCC--HHHHHHH--HHc---------------CCh-HHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH
Confidence            9999998885431  1111111  000               001 455666643  4478999999999998654322 


Q ss_pred             -----HhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCchHHHHHHHHHHH-
Q psy14014        462 -----EFFDEKLNALCMTWLVDHV-YAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYLHRMTCLFCINV-  532 (615)
Q Consensus       462 -----~~~~~~l~~~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~-  532 (615)
                           .......+|.+.+++.++. +.+|..++.+++.++..-..  ......++|.|.+++.++++.+|..+++++++ 
T Consensus       345 ~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~  424 (529)
T 1jdh_A          345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ  424 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCch
Confidence                 1222346788899998876 59999999999999752111  11224578999998888877777766555443 


Q ss_pred             ---------------------HHhhhCh--hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh--hhhHHhhHHH
Q psy14014        533 ---------------------LAEACGP--TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE--TNVIQSQVKP  587 (615)
Q Consensus       533 ---------------------l~~~~~~--~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~  587 (615)
                                           ++.....  .......+|.+..++.|++++||..++.++.++...-.  .........+
T Consensus       425 ~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~  504 (529)
T 1jdh_A          425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA  504 (529)
T ss_dssp             -CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH
T ss_pred             hhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChH
Confidence                                 3321110  11234577999999999999999999999999874211  1122334567


Q ss_pred             HHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        588 ALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       588 ~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                      .+..+..++|++|++.|..|+..+
T Consensus       505 ~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          505 PLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhc
Confidence            788888999999999999999876

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.91  E-value=2.5e-21  Score=200.41  Aligned_cols=391  Identities=15%  Similarity=0.120  Sum_probs=287.3

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc--CchhHHHHHHHHHHHHHhh--------------
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD--EQDSVRLLAVEACVSIASL--------------  236 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d--~~~~vr~~a~~~l~~l~~~--------------  236 (615)
                      +..+.+++..+|+.|-+.|..+.+.-     .+...+.+...+.+  .+..+|..|...+..+...              
T Consensus         7 L~~~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~   81 (462)
T 1ibr_B            7 LEKTVSPDRLELEAAQKFLERAAVEN-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL   81 (462)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence            33456788999999999998865421     12334444444444  3678999999999887632              


Q ss_pred             -cChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHh
Q psy14014        237 -LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS--EAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       237 -~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~  313 (615)
                       ++++ ....+...+...+.+++..+ ..++.+++.++....++...+.++|.+...+.+.  ++.+|..++.+++.+++
T Consensus        82 ~l~~~-~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~  159 (462)
T 1ibr_B           82 AIDAN-ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (462)
T ss_dssp             TSCHH-HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCHH-HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence             2322 24456666777788888888 9999999999987544323468999999999998  89999999999999998


Q ss_pred             hccccchhHHHHHhhHHHHHHhhCCC--CHHHHHHHHHHHHhhchhhcch----hhhhhhHHHHHHhhcCCChhHHHHHH
Q psy14014        314 NLDAYNQENIIMTYILPYVKDLVADP--NQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNII  387 (615)
Q Consensus       314 ~~~~~~~~~~~~~~l~p~l~~~~~d~--~~~vR~~~~~~l~~l~~~~g~~----~~~~~l~p~l~~~l~d~~~~vr~~a~  387 (615)
                      ...+... ..+.+.++|.+...++|+  ++.||..++++++.+...++..    ...+.+++.+.+.+.+.+++||..++
T Consensus       160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~  238 (462)
T 1ibr_B          160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL  238 (462)
T ss_dssp             HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            6532211 234567889999999988  7999999999999876654321    12345678888888888999999999


Q ss_pred             HhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh--------
Q psy14014        388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL--------  459 (615)
Q Consensus       388 ~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~--------  459 (615)
                      +++..+.+..+.. +.      .++            ...+. +.+...+++.+..+|..+++.+..++...        
T Consensus       239 ~~l~~l~~~~~~~-~~------~~~------------~~~l~-~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  298 (462)
T 1ibr_B          239 QNLVKIMSLYYQY-ME------TYM------------GPALF-AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS  298 (462)
T ss_dssp             HHHHHHHHHCGGG-CT------TTT------------TTTHH-HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-HH------HHH------------HHHHH-HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998876644321 00      011            10111 45566677888999999999998887652        


Q ss_pred             ------------ChHh---HHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC
Q psy14014        460 ------------GVEF---FDEKLNALCMTWLV-------DHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD  517 (615)
Q Consensus       460 ------------~~~~---~~~~l~~~l~~~l~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d  517 (615)
                                  ...+   +.+.++|.+++.+.       |.++.+|.+|..+++.++..+|. .....++|.+...+++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~  377 (462)
T 1ibr_B          299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKN  377 (462)
T ss_dssp             CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTC
T ss_pred             cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcC
Confidence                        0111   23668888888774       34688999999999999999984 3456788999999999


Q ss_pred             CCchHHHHHHHHHHHHHhhhChhh---HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh-HHhhHHHHHhhh
Q psy14014        518 QNYLHRMTCLFCINVLAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV-IQSQVKPALDKL  592 (615)
Q Consensus       518 ~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~l  592 (615)
                      ++|.+|..++.++|.+++.++++.   ..+.++|.+..+++|+++.||..|+.++++++...++.. ..+.+.+++..|
T Consensus       378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~L  456 (462)
T 1ibr_B          378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  456 (462)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            999999999999999998665332   346789999999999999999999999999998876532 124555655554

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=2e-21  Score=211.87  Aligned_cols=493  Identities=13%  Similarity=0.081  Sum_probs=337.6

Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh--h--HHHH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--V--KAEL  168 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l  168 (615)
                      +.+...+.+++..+|..++..+....    ...+....+|.+..+..+++..+|..|+..+..++......  .  ...+
T Consensus       118 ~~lv~~L~~~~~~~r~~a~~~l~~~~----~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~  193 (780)
T 2z6g_A          118 PTNVQRLAEPSQMLKHAVVNLINYQD----DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM  193 (780)
T ss_dssp             --------CCSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHhhh----HHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence            44444446667788888877776442    22334556777777777777888999998888877643211  1  1346


Q ss_pred             HHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hH-
Q psy14014        169 RSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DV-  242 (615)
Q Consensus       169 ~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~-  242 (615)
                      ++.+..++. +.++.+|..++.+|..++..-..  .......+|.+.++++++++.+|..|+.+|..++...+..  .+ 
T Consensus       194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~  273 (780)
T 2z6g_A          194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR  273 (780)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            666666665 45899999999999998754221  2234568999999999999999999999999998875432  11 


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCcHHH-HHHHHHHHHHHHhhcccc
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSEAEV-RAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~~~~~~~~~  318 (615)
                      ....+|.+.+++.++++.++..++.++..++...   .........++.+..++++.+++. +..++.++..++..  ..
T Consensus       274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~  351 (780)
T 2z6g_A          274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SS  351 (780)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TT
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hH
Confidence            2458899999999999999999999988776311   001112356788888888776554 45667777776642  22


Q ss_pred             chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhc
Q psy14014        319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG  398 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  398 (615)
                      .+........+|.|..++.+.+..++..+++++..++...........++|.+.+++.+.++.+|..|+.+|..+.....
T Consensus       352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            22233345678999999999999999999999999986544333345689999999999999999999999988754321


Q ss_pred             hhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCc-hHHHHHHHHhHHHHhhhCh------HhHHHHHHH
Q psy14014        399 IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKW-RVRLAIIEYMPLLAGQLGV------EFFDEKLNA  470 (615)
Q Consensus       399 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~-~vr~~~~~~l~~l~~~~~~------~~~~~~l~~  470 (615)
                        ......  .+               .... +.+.+++.+ .++ .+|..++.+|+.++...+.      .......+|
T Consensus       432 --~~~~~i--~~---------------~g~i-~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~  491 (780)
T 2z6g_A          432 --KNKMMV--CQ---------------VGGI-EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP  491 (780)
T ss_dssp             --HHHHHH--HT---------------TTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH
T ss_pred             --HHHHHH--HH---------------CCCH-HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH
Confidence              111111  00               0001 455666654 344 8999999999988653322      112234578


Q ss_pred             HHHHhcCCcch-HHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCc----------------------hHH
Q psy14014        471 LCMTWLVDHVY-AIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNY----------------------LHR  523 (615)
Q Consensus       471 ~l~~~l~d~~~-~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~----------------------~~R  523 (615)
                      .+.+++.++.. .+|..++.+++.++.  ++..    ....++|.|.+++.+.++                      .++
T Consensus       492 ~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~  569 (780)
T 2z6g_A          492 VVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  569 (780)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence            88999987764 999999999999984  2221    123477888877765433                      355


Q ss_pred             HHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhcCCCCcc
Q psy14014        524 MTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLNGDTDVD  599 (615)
Q Consensus       524 ~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~d~~  599 (615)
                      ..++.+|+.++......  .....++|.|..++.+++++||..++.+|..+...-+..  .......+.+..|+.+++.+
T Consensus       570 ~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~  649 (780)
T 2z6g_A          570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG  649 (780)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            66777777775321111  123567899999999999999999999999986331111  11223456677788999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14014        600 VKYFAQEAISSIAD  613 (615)
Q Consensus       600 v~~~a~~a~~~~~~  613 (615)
                      ||.+|..|+..+++
T Consensus       650 Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          650 VATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=5.3e-21  Score=205.49  Aligned_cols=473  Identities=14%  Similarity=0.104  Sum_probs=324.8

Q ss_pred             CcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh
Q psy14014         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (615)
Q Consensus        84 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  163 (615)
                      +..+....+|.|..++.++++.+|..|+.+|..++.........          ..                        
T Consensus         8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i----------~~------------------------   53 (644)
T 2z6h_A            8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI----------MR------------------------   53 (644)
T ss_dssp             ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHH----------TT------------------------
T ss_pred             hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHH----------Hh------------------------
Confidence            33444556788888888999999999999999998765421100          00                        


Q ss_pred             hHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014        164 VKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  240 (615)
Q Consensus       164 ~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  240 (615)
                       ....++.+...+. +.++.+|..++.+|..++..-..  .......+|.+.++++++++.+|..|+.++..++......
T Consensus        54 -~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           54 -SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             -CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH
T ss_pred             -ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Confidence             0112233344444 34788888888888877653221  1223468899999999999999999999999998775432


Q ss_pred             h---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHh
Q psy14014        241 D---VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKDSE-AEVRAAAANKVRDFCQ  313 (615)
Q Consensus       241 ~---~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~  313 (615)
                      .   .....+|.+.+++.+++++++..++.+|..++...+.   .......++.+..++++.+ ..++..++.+|..++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            1   1346899999999999999999999999888742111   1122356888888888765 5677788888887764


Q ss_pred             hccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       314 ~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                        .+..+........+|.+.+++.+.+..+|..++++|..++...........++|.+.+++.+.++++|..++.+|..+
T Consensus       213 --~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L  290 (644)
T 2z6h_A          213 --CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  290 (644)
T ss_dssp             --CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence              223333334455789999999999999999999999999875433333456899999999999999999999999887


Q ss_pred             hhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-C-CchHHHHHHHHhHHHHhhhChH------hHH
Q psy14014        394 NEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-S-KWRVRLAIIEYMPLLAGQLGVE------FFD  465 (615)
Q Consensus       394 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~-~~~vr~~~~~~l~~l~~~~~~~------~~~  465 (615)
                      ....  ...++.+.-...+                  +.+..++.+ . .+.+|..++.+++.++...+..      ...
T Consensus       291 ~~~~--~~~~~~v~~~g~v------------------~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~  350 (644)
T 2z6h_A          291 TCNN--YKNKMMVCQVGGI------------------EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL  350 (644)
T ss_dssp             HTTC--HHHHHHHHHTTHH------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH
T ss_pred             HcCC--HHHHHHHHHcCCH------------------HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            5431  1111111000011                  455666654 2 3789999999999997543321      223


Q ss_pred             HHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCch---------------------
Q psy14014        466 EKLNALCMTWLVDHV-YAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYL---------------------  521 (615)
Q Consensus       466 ~~l~~~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~---------------------  521 (615)
                      ...+|.+.+++.++. +.+|..++.+++.++..-..  ......++|.|.+++.+.++.                     
T Consensus       351 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~  430 (644)
T 2z6h_A          351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME  430 (644)
T ss_dssp             TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHH
T ss_pred             ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHH
Confidence            357888999998875 69999999999998752111  112345788888877664443                     


Q ss_pred             -HHHHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhcCCC
Q psy14014        522 -HRMTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLNGDT  596 (615)
Q Consensus       522 -~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~  596 (615)
                       ++..++.++..++......  ......+|.|..++.+++++++..++.+|..+...-+..  .......+.+..+..++
T Consensus       431 ~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~  510 (644)
T 2z6h_A          431 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR  510 (644)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCC
Confidence             4455666666665432111  123467899999999999999999999999987431111  11223456677788999


Q ss_pred             CccHHHHHHHHHHHHhh
Q psy14014        597 DVDVKYFAQEAISSIAD  613 (615)
Q Consensus       597 d~~v~~~a~~a~~~~~~  613 (615)
                      +++||.+|..|++.+++
T Consensus       511 ~~~vr~~A~~aL~~l~~  527 (644)
T 2z6h_A          511 NEGVATYAAAVLFRMSE  527 (644)
T ss_dssp             CHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.90  E-value=2.6e-19  Score=189.93  Aligned_cols=572  Identities=13%  Similarity=0.088  Sum_probs=384.3

Q ss_pred             HHHHHhcC-ccHHHHHHHHhcHHHHHHHhCcch----hhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCC-------
Q psy14014         17 VLIDELKN-EDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVG-------   83 (615)
Q Consensus        17 ~ll~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~-------   83 (615)
                      .+..-+++ ++.+....++|.|+.+++.- .++    ...-=.|.+.+.+..++ ++-.+++.++..+...+.       
T Consensus        53 ~~~~l~~~~~~~~~~~~~~r~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (810)
T 3now_A           53 KVASLTKVEKDQDIYVNMVHLVAALCENS-VERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPD  131 (810)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhcc-HHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccc
Confidence            33334444 77888889999999997522 111    11122344555544443 344444444443332111       


Q ss_pred             -Cc------c---hhhhchHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHH----hh-hHHHHHHHhhcCC-----
Q psy14014         84 -GP------E---YVHCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPHDL----EA-HFVPLVQRLASGD-----  141 (615)
Q Consensus        84 -~~------~---~~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~----~~-~~l~~l~~l~~~~-----  141 (615)
                       ++      +   -+..++..|..++.+.  ....|+.+++.+.+...+-.....    .. -+..++.-...-+     
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~  211 (810)
T 3now_A          132 SKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYE  211 (810)
T ss_dssp             CCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCS
T ss_pred             cCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCcccccc
Confidence             11      1   2334555566666665  468999999988877654432111    11 1222222222211     


Q ss_pred             -----CcchhhhHHhhhhhhccCCC-----hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hh-hHhhh
Q psy14014        142 -----WFTSRTSACGLFSVCYPRVT-----AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DY-LKTDI  207 (615)
Q Consensus       142 -----~~~~r~~a~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~-~~~~l  207 (615)
                           ..+.|..+.-++..+|..+.     +...+.+-.++...+...+.+-+-.++.++..+......   .. ..+..
T Consensus       212 ~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~  291 (810)
T 3now_A          212 SAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGI  291 (810)
T ss_dssp             SCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTH
T ss_pred             ccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccch
Confidence                 24678888889999998886     333444445555566667777777777777777654322   12 24578


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc-------
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE-------  279 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~-------  279 (615)
                      +|.+..++..++..++..|+++++..+..-.. +.+...-+|.|..++.+.+..+|..++.+|.+++...+.+       
T Consensus       292 v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~  371 (810)
T 3now_A          292 LQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG  371 (810)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh
Confidence            89999999999999999999999987655211 1112223499999998888899999998888887543311       


Q ss_pred             -chhhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhccccchhHHHH-HhhHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy14014        280 -ITKTDLVQAFQMLLKDS--EAEVRAAAANKVRDFCQNLDAYNQENIIM-TYILPYVKDLVADPNQHVKSALASVIMGLS  355 (615)
Q Consensus       280 -~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~  355 (615)
                       .....+++.+.+++.++  ++++|..|+.+|..+...  +..+..... ..++|.|..++.+++..++..++.+|++++
T Consensus       372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt  449 (810)
T 3now_A          372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC  449 (810)
T ss_dssp             TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence             11346789999999888  899999999999988753  333332332 468899999999999999999999999998


Q ss_pred             hhhcch----------------------------------h-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014        356 PILGKH----------------------------------N-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       356 ~~~g~~----------------------------------~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  400 (615)
                      .....+                                  . .....+|.|.++++.+++.+|..|+.+|..+..   +.
T Consensus       450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~  526 (810)
T 3now_A          450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG---LK  526 (810)
T ss_dssp             TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SH
T ss_pred             CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CH
Confidence            743100                                  0 112468999999999999999999999998863   22


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhH-----HHHHHHHHHHh
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFF-----DEKLNALCMTW  475 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~  475 (615)
                      ..+..+.-...+                  |.+..++.+.....|..++.+|..++....++..     ....+|.+..+
T Consensus       527 ~~r~~Vv~~Gai------------------p~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~L  588 (810)
T 3now_A          527 ELRGKVVQEGGV------------------KALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL  588 (810)
T ss_dssp             HHHHHHHHTTHH------------------HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHT
T ss_pred             HHHHHHHHCCCH------------------HHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHH
Confidence            223222000112                  6777888888889999999999999865444321     12367888998


Q ss_pred             cCCc-chHHHHHHHHHHHHHHHHhChH----HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhHH--HhhH
Q psy14014        476 LVDH-VYAIREAATLNLKKLVEQFGSE----WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVTA--NFLL  547 (615)
Q Consensus       476 l~d~-~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~~--~~i~  547 (615)
                      +... ....+..|+.+|..++.. +++    ......+|.|..++.++++.+|..|++++++++..-.. ..+.  ...+
T Consensus       589 L~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l  667 (810)
T 3now_A          589 LQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRV  667 (810)
T ss_dssp             TSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHH
T ss_pred             hCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcH
Confidence            8754 334566889999988753 221    12234789999999999999999999999999753111 1122  3578


Q ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--h-hHH-hhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        548 PTVLNMAGDNVANVRFNVAKTLQKIGPILET--N-VIQ-SQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       548 ~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~-~~~-~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      |.|..++..++..+|..|+++|+.+....+.  . ... ....+.+..|+.+.|.+++..|..|+..+..
T Consensus       668 ~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          668 KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999874321  1 222 3566677778889999999999999988764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=4.9e-21  Score=197.42  Aligned_cols=384  Identities=10%  Similarity=0.072  Sum_probs=283.4

Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hh-HHH-hHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCc---
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SD-VEQ-LVMPTLRQCSGDT-SWRVRYMVADKFTDLQKAVGP---  278 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~-~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~---  278 (615)
                      +|.+.+.++++++.+|..|+..+..+......   +. ... .++|.+.+++.++ ++.+|..++.+++.++.....   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            66677777777888888888888876542111   11 222 5788888888887 889999999999888752111   


Q ss_pred             cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchh
Q psy14014        279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~  357 (615)
                      ......++|.+.++++++++++|..|+.+|+.++...+ ..+.......++|.+..++.+ .++.+|..++++++.++..
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            11224689999999999999999999999999887432 122222334688999998885 7999999999999999864


Q ss_pred             hc---chhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHH
Q psy14014        358 LG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV  434 (615)
Q Consensus       358 ~g---~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~  434 (615)
                      .+   .......++|.+.+++.+.++.++..++.++..+......  ......-...+                  |.+.
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i------------------~~L~  240 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND--KIQAVIDAGVC------------------RRLV  240 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH--HHHHHHHTTTH------------------HHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH--HHHHHHHcCcH------------------HHHH
Confidence            31   1233467899999999999999999999999887653211  11110000111                  6777


Q ss_pred             HhhhcCCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhhhchh
Q psy14014        435 ELAEDSKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQSTVI  508 (615)
Q Consensus       435 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~  508 (615)
                      .++.++++.+|..++.+++.++...+..   .....++|.+.+++.++++.+|..|+.+++.++.....   ......++
T Consensus       241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l  320 (450)
T 2jdq_A          241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF  320 (450)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred             HHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            8888999999999999999997643221   12235788999999999999999999999999752211   11224688


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh-----
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN-----  579 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~-----  579 (615)
                      |.+.+++.++++.+|..+++++++++...+++.    +...++|.|..++.++++.||..++.+|..+....+..     
T Consensus       321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  400 (450)
T 2jdq_A          321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG  400 (450)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence            999999999999999999999999987644332    23568999999999999999999999999998754321     


Q ss_pred             ----hHHhhH-----HHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        580 ----VIQSQV-----KPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       580 ----~~~~~~-----~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                          .+...+     .+.+..|..+++.+|+..|..+++.+-
T Consensus       401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                112222     355677788899999999999998764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=5.3e-21  Score=201.02  Aligned_cols=386  Identities=11%  Similarity=0.086  Sum_probs=288.8

Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhC--
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSGDT-SWRVRYMVADKFTDLQKAVG--  277 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~--  277 (615)
                      ...+|.+.+.++++++.+|..|+..+..+......    ......++|.+.+++.++ ++.+|..++.+|+.++....  
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            34577777777888888888888888887654321    122345788999999887 89999999999998875211  


Q ss_pred             -ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014        278 -PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       278 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~  356 (615)
                       ........+|.+..++++.++++|..|+.+|..++..-+ ..+.......++|.+..++.+.++.+|..++++|..++.
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc-cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence             111124678999999999999999999999999986422 122223345689999999999999999999999999986


Q ss_pred             hhc---chhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHH
Q psy14014        357 ILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI  433 (615)
Q Consensus       357 ~~g---~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i  433 (615)
                      .-+   .......++|.+.+++.+.++.|+..++.+|..+...... . .+..     +            ...+. |.+
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-~-~~~~-----~------------~~~~v-~~L  304 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-A-IQAV-----I------------DVRIP-KRL  304 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-H-HHHH-----H------------HTTCH-HHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH-H-HHHH-----H------------hcCcH-HHH
Confidence            431   1233457899999999999999999999999888643211 1 1111     0            00011 678


Q ss_pred             HHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhc
Q psy14014        434 VELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQST  506 (615)
Q Consensus       434 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~  506 (615)
                      ..++.++++.+|..++.+++.++...+.   ......++|.+..++.++++.+|..|+.+++.++.. +++.    ....
T Consensus       305 v~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~  383 (530)
T 1wa5_B          305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDAN  383 (530)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTT
T ss_pred             HHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence            8888899999999999999998753221   223346889999999999999999999999999753 2221    2245


Q ss_pred             hhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh--hh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh-
Q psy14014        507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP--TV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN-  579 (615)
Q Consensus       507 i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~-  579 (615)
                      ++|.|..++.++++.+|..++++++.++...++  +.    +...++|.|..++.++++.||..++.+|..+....+.. 
T Consensus       384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~  463 (530)
T 1wa5_B          384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK  463 (530)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            889999999999999999999999999876543  22    23468999999999999999999999999998754321 


Q ss_pred             --------hH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        580 --------VI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       580 --------~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                              .+     .....+.+..|.++++.+|++.|..++..+-
T Consensus       464 ~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          464 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             HHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred             hcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                    11     1224567777889999999999999998764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.90  E-value=7e-21  Score=207.55  Aligned_cols=520  Identities=13%  Similarity=0.023  Sum_probs=343.3

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcc-h--hh
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPE-Y--VH   89 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~-~--~~   89 (615)
                      .+..++..|.+++...|..+.+.+......    ......+|.|..++.+++ .||..++.+|+.++....... .  .+
T Consensus       116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~  191 (780)
T 2z6g_A          116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP  191 (780)
T ss_dssp             ----------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhcc
Confidence            367889999999999998888888755332    133456666666666666 599999999999876321000 0  12


Q ss_pred             hchHHHhhhhc-CchhHHHHHHHHHHHHHHhhcCh--hHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh---h
Q psy14014         90 CLLPPLESLAT-VEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA---G  163 (615)
Q Consensus        90 ~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~  163 (615)
                      ..++.|..++. +++..+|..|+.+|..++..-..  .......+|.+..+..+++..+|..|+..+..++..-..   .
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~  271 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA  271 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence            35666655554 45889999999999997654221  122345788898988888888999999988887654322   1


Q ss_pred             h-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhhhHhhhHHHHHHhhccCchh-HHHHHHHHHHHHHhhcC
Q psy14014        164 V-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDS-VRLLAVEACVSIASLLS  238 (615)
Q Consensus       164 ~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~  238 (615)
                      + ....++.+..++.++++.+|..++.++..++....   ........++.+..++++.+.+ ++..+..++..++..-.
T Consensus       272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~  351 (780)
T 2z6g_A          272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS  351 (780)
T ss_dssp             HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence            2 24577888999999999999999999988774211   1123345678888888876654 45567777777775322


Q ss_pred             h--hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        239 Q--SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       239 ~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      .  ......++|.+..++.+.+..++..++.++..++...........++|.+.+++++.++++|..|+.+|..+...- 
T Consensus       352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~-  430 (780)
T 2z6g_A          352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-  430 (780)
T ss_dssp             HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-
T ss_pred             HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-
Confidence            1  1122347899999999999999999999999998765544344679999999999999999999999999987642 


Q ss_pred             ccchhHHHHHhhHHHHHHhhCC-CC-HHHHHHHHHHHHhhchhhcch-----h-hhhhhHHHHHHhhcCCC-hhHHHHHH
Q psy14014        317 AYNQENIIMTYILPYVKDLVAD-PN-QHVKSALASVIMGLSPILGKH-----N-TVDHLLPLFLSQLKDEC-PEVRLNII  387 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~~d-~~-~~vR~~~~~~l~~l~~~~g~~-----~-~~~~l~p~l~~~l~d~~-~~vr~~a~  387 (615)
                      .+.+........+|.|.+++.+ .+ ..+|..++.+|+.++...+..     . .....+|.+.+++.+.+ +.+|..++
T Consensus       431 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~  510 (780)
T 2z6g_A          431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV  510 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence            1112112224467777777765 33 499999999999997533221     1 12356899999998766 49999999


Q ss_pred             HhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHH
Q psy14014        388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEK  467 (615)
Q Consensus       388 ~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  467 (615)
                      .+|+.+...  ... +..+  .+               ..+. |.+.+++.+.++.+|..++.++..-            
T Consensus       511 ~aL~nLa~~--~~~-~~~i--~~---------------~g~i-~~Lv~lL~~~~~~~~~~aa~al~nq------------  557 (780)
T 2z6g_A          511 GLIRNLALC--PAN-HAPL--RE---------------QGAI-PRLVQLLVRAHQDTQRRTSMGGTQQ------------  557 (780)
T ss_dssp             HHHHHHHSS--HHH-HHHH--HH---------------TTHH-HHHHHHHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHhcC--HHH-HHHH--HH---------------CCCH-HHHHHHHHhcchhHHHHHhhccccc------------
Confidence            999888642  111 1111  00               0011 4556666655555555444332210            


Q ss_pred             HHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-h-hH
Q psy14014        468 LNALCMTWL-VDHVYAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-T-VT  542 (615)
Q Consensus       468 l~~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~-~~  542 (615)
                        +    +. ......++..++.+|+.++..-..  .......+|.|.+++.++++.+|..++.+++.++..-.. . ..
T Consensus       558 --~----~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~  631 (780)
T 2z6g_A          558 --Q----FVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE  631 (780)
T ss_dssp             --C----CSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             --h----hhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence              0    00 112345788888888887631100  011245789999999999999999999999998733111 1 11


Q ss_pred             HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014        543 ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE  577 (615)
Q Consensus       543 ~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~  577 (615)
                      ....++.|.+++.+++++||..|..+|.++...-+
T Consensus       632 ~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            23478889999999999999999999999986443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.89  E-value=2.5e-19  Score=190.06  Aligned_cols=579  Identities=11%  Similarity=0.075  Sum_probs=394.5

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHh---------Ccc--------hhhccchhhhhhhcCCcH---HHHHHHHH
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALAL---------GQE--------RTRGELIPFLTETIYDED---EVLLALAE   73 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~---------~~~--------~~~~~ll~~l~~~~~~~~---~vr~~a~~   73 (615)
                      .+..+..-|.+++.+.-.++.+.+-.+-..+         +++        +....++..|...+.+..   ..|..+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~  172 (810)
T 3now_A           93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE  172 (810)
T ss_dssp             CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence            4566777777877776667776666664322         121        122344444555666654   38999998


Q ss_pred             HhccccCCCCC--cchhhh---chHHHhhhhcCc----------hhHHHHHHHHHHHHHHhhcCh----hHHhhhHHHHH
Q psy14014         74 QLGTFTPNVGG--PEYVHC---LLPPLESLATVE----------ETVVRDKAVESLRLISAQHSP----HDLEAHFVPLV  134 (615)
Q Consensus        74 ~l~~l~~~~~~--~~~~~~---l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~----~~~~~~~l~~l  134 (615)
                      .|.+-+.+-..  ...+..   +..+|.-...-+          .+++|..+..++.++.+.+.-    +...+.+-.++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  252 (810)
T 3now_A          173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI  252 (810)
T ss_dssp             HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            88876654321  111111   111221111111          468999999999999999874    33444455566


Q ss_pred             HHhhcCCCcchhhhHHhhhhhhccCCChhh-----HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-hh-hHhhh
Q psy14014        135 QRLASGDWFTSRTSACGLFSVCYPRVTAGV-----KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DY-LKTDI  207 (615)
Q Consensus       135 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~-~~~~l  207 (615)
                      ...........+..|+..+..+++...+..     ....++.+..++.+++..++..++.+++..+..-.. +. ....+
T Consensus       253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv  332 (810)
T 3now_A          253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV  332 (810)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred             HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence            555555555666777777777776665432     235778889999999999999999999997654211 11 22334


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh--------hhHHHhHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhC
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--------SDVEQLVMPTLRQCSGDT--SWRVRYMVADKFTDLQKAVG  277 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~  277 (615)
                       |.+..+++++++.+|..|+.+|..++...+.        +.-...+++.+.+++.++  +..+|..+++.|..++....
T Consensus       333 -~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~  411 (810)
T 3now_A          333 -DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE  411 (810)
T ss_dssp             -HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH
T ss_pred             -HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH
Confidence             9999999988899999999999998754321        111345788888888777  78899999999998874322


Q ss_pred             c--cch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc---------------------c-------h---hHH
Q psy14014        278 P--EIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY---------------------N-------Q---ENI  323 (615)
Q Consensus       278 ~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---------------------~-------~---~~~  323 (615)
                      .  ... ...++|.|..+++..++.++..|+.+|..+.......                     .       .   ...
T Consensus       412 vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~V  491 (810)
T 3now_A          412 CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL  491 (810)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHH
Confidence            1  111 2368999999999999999999999999998743110                     0       0   112


Q ss_pred             HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hhh-hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH
Q psy14014        324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-HNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ  401 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~~-~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  401 (615)
                      +....+|.|..++.++++.+|..++++|++++..-.. ... ....+|.++.++.+.++.+|..|+.+|..+.....+..
T Consensus       492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          492 ANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            2345789999999999999999999999999743111 111 23468999999999889999999999998865433221


Q ss_pred             HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhh---ChHhHHHHHHHHHHHhcC
Q psy14014        402 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQL---GVEFFDEKLNALCMTWLV  477 (615)
Q Consensus       402 ~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~  477 (615)
                      .-....+.+.+                  |.+..++... +...+..++.+|..++..-   .........+|.+..++.
T Consensus       572 ~~~~~~~~~aI------------------ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~  633 (810)
T 3now_A          572 SFSGQRSLDVI------------------RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM  633 (810)
T ss_dssp             HTTTHHHHHTH------------------HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hhcchhhhcHH------------------HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence            00000001122                  5566676644 3334557888888887532   112233456888999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHhChHH---hh--hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHH-HhhHH
Q psy14014        478 DHVYAIREAATLNLKKLVEQFGSEW---AQ--STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TVTA-NFLLP  548 (615)
Q Consensus       478 d~~~~vR~~a~~~l~~l~~~~~~~~---~~--~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~-~~i~~  548 (615)
                      +++..+|..|+.+++.++.  +++.   +.  ...++.|..++..++..+|..|+++|+.+......   ..+. ...+|
T Consensus       634 s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~  711 (810)
T 3now_A          634 EDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD  711 (810)
T ss_dssp             SCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH
Confidence            9999999999999999975  3321   11  24788999999999999999999999999863221   2233 56889


Q ss_pred             HHHhhCCCCCchHHHHHHHHHHHHhHhhh---hhhHHhhHHHHHhhhcCC---CCccHHHHHHHHHHHHhh
Q psy14014        549 TVLNMAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKLNGD---TDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       549 ~l~~~~~D~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~d---~d~~v~~~a~~a~~~~~~  613 (615)
                      .|..++.+++..+|..++.++.++....+   .........+.+..++.+   ++.++.+.|.+|++.+-+
T Consensus       712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          712 ILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999986322   112234456666776543   479999999999998753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.89  E-value=1e-20  Score=195.13  Aligned_cols=384  Identities=9%  Similarity=0.037  Sum_probs=286.1

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHh-ch---hhhHh-hhHHHHHHhhccC-chhHHHHHHHHHHHHHhhcChh--
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVV-EV---DYLKT-DIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQS--  240 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~-~~---~~~~~-~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--  240 (615)
                      ++.+.+.++++++.+|..++..+..++... .+   ..... .++|.+.++++++ ++.+|..|..++..++...+..  
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            456677778889999999999999886521 11   12233 7899999999988 8999999999999988643321  


Q ss_pred             -hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhc
Q psy14014        241 -DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       241 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~  315 (615)
                       .....++|.+.++++++++.+|..++.+|+.++....   .......++|.+..++++ .++++|..|+.++..++..-
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence             1234689999999999999999999999999986321   111123678999999985 78999999999999998754


Q ss_pred             cccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       316 ~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                      .+.... .....++|.+.+++.+.++.+|..+++++..++.....   ......++|.+.+++.++++.+|..++.+++.
T Consensus       182 ~~~~~~-~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          182 SPPPEF-AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSCCCG-GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCH-HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            222111 22367899999999999999999999999999864321   11223578999999999999999999999988


Q ss_pred             hhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHH
Q psy14014        393 VNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLN  469 (615)
Q Consensus       393 l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~  469 (615)
                      +....+.  ..+..     +            ...+. |.+..+++++++.+|..++.+++.++.....   ......++
T Consensus       261 l~~~~~~--~~~~~-----~------------~~~~l-~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l  320 (450)
T 2jdq_A          261 IVTGDDI--QTQVI-----L------------NCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF  320 (450)
T ss_dssp             HTTSCHH--HHHHH-----H------------TTTHH-HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred             HhhCChH--HHHHH-----H------------HCccH-HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            8653221  11111     1            00011 6778888899999999999999999752211   12234688


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-----
Q psy14014        470 ALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT-----  540 (615)
Q Consensus       470 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~-----  540 (615)
                      |.+.+++.+++..+|..|+.+++.++...+++.    ....++|.|.+++.++++.+|..++.+++.+....+..     
T Consensus       321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  400 (450)
T 2jdq_A          321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG  400 (450)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence            889999999999999999999999987644332    22458999999999999999999999999998754321     


Q ss_pred             ----hHHH-----hhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        541 ----VTAN-----FLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       541 ----~~~~-----~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                          .+..     ..++.+..+..+++..|+..+..++..+.
T Consensus       401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                1111     23566777778888888888888888775

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.89  E-value=2.6e-20  Score=197.20  Aligned_cols=471  Identities=12%  Similarity=0.088  Sum_probs=324.7

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhch
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      ....+++.++++|...|..+.-.+...+.. .++ ...-+++.+.+-++++++ +|..|...|+.+.    .++..+.++
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e-~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~  123 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPD-MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLC  123 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHH-HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHccc-Cch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHH
Confidence            355667788999999998888888877653 233 223344555555677775 9999999998875    467788889


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  172 (615)
                      |.+..++.|+++.||..|+.++.++....++ .+.                                     ...+++.+
T Consensus       124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~-------------------------------------~~~~~~~l  165 (591)
T 2vgl_B          124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVE-------------------------------------DQGFLDSL  165 (591)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHH-------------------------------------HHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hcc-------------------------------------cccHHHHH
Confidence            9999999999999999999999998875442 111                                     01344556


Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchh---hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPT  249 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  249 (615)
                      ..++.|+++.||..++.+++.++..-+..   ......++.+...+.+.+++.+...+..+..++..  ++.....+++.
T Consensus       166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~  243 (591)
T 2vgl_B          166 RDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICER  243 (591)
T ss_dssp             HHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHH
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence            77888999999999999999987653321   11223455555666677888887777666544321  12234568888


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHh--Cccch---hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014        250 LRQCSGDTSWRVRYMVADKFTDLQKAV--GPEIT---KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII  324 (615)
Q Consensus       250 l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  324 (615)
                      +..++++.++.|+..++.++..+....  ..+..   ...+.+.+..++ ++++++|..|+.++..+....+....    
T Consensus       244 l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~----  318 (591)
T 2vgl_B          244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK----  318 (591)
T ss_dssp             HTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT----
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH----
Confidence            888899999999999999998876533  11211   124555666555 58899999999999999875432211    


Q ss_pred             HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014        325 MTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV  404 (615)
Q Consensus       325 ~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  404 (615)
                       + .+..+....+|+ +.||..+++.+..++..    ...+.+++.+.+++++.++++|..++.+++.+...+... .. 
T Consensus       319 -~-~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~----~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~-~~-  389 (591)
T 2vgl_B          319 -Q-EIKVFFVKYNDP-IYVKLEKLDIMIRLASQ----ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS-AE-  389 (591)
T ss_dssp             -T-CTTTTSCCTTSC-HHHHHHHHHHHHHTCCS----STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH-HH-
T ss_pred             -H-HHHhheeccCCh-HHHHHHHHHHHHHHCCh----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH-HH-
Confidence             1 111111122444 99999999998887642    224567888889999989999999999999887655321 11 


Q ss_pred             HHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-CcchHH
Q psy14014        405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-DHVYAI  483 (615)
Q Consensus       405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~v  483 (615)
                           .++                  +.+.+++++....++..++..+..+....+..  .+..++.+.+.+. +....+
T Consensus       390 -----~~v------------------~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~  444 (591)
T 2vgl_B          390 -----RCV------------------STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDA  444 (591)
T ss_dssp             -----HHH------------------HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHH
T ss_pred             -----HHH------------------HHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHH
Confidence                 113                  46677778888788888888888887655431  1234556667665 456788


Q ss_pred             HHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCC-CCchHH
Q psy14014        484 REAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGD-NVANVR  562 (615)
Q Consensus       484 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D-~~~~vr  562 (615)
                      |.++++++|..+.....   ...++..+.+.+.+.++.+|..++.++..+....+... .+.+...+..+..| .+++||
T Consensus       445 ~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d~~d~evr  520 (591)
T 2vgl_B          445 RAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDLR  520 (591)
T ss_dssp             HHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhcCCChHHH
Confidence            99999999888665432   23566667766677889999999999999987654321 23334444444456 678999


Q ss_pred             HHHHHHHHHHh
Q psy14014        563 FNVAKTLQKIG  573 (615)
Q Consensus       563 ~~a~~~l~~l~  573 (615)
                      ..|...+.-+.
T Consensus       521 dRA~~y~~ll~  531 (591)
T 2vgl_B          521 DRGYIYWRLLS  531 (591)
T ss_dssp             HHHHHHHTTTT
T ss_pred             HHHHHHHHHHC
Confidence            99988776653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=1.8e-20  Score=196.90  Aligned_cols=386  Identities=10%  Similarity=0.044  Sum_probs=288.8

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhccC-chhHHHHHHHHHHHHHhhcChh---
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQS---  240 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~---  240 (615)
                      ++.+...+.++++.+|..++..|..++.....    ......++|.+.++++++ ++.+|..|+.++..++...+..   
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34556666778889999999888888653211    223457899999999887 8899999999999887643321   


Q ss_pred             hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                      ......+|.+..++.++++.+|..++.+|+.++...   ........++|.+..++.+.++++|..|+.+|..++..-.+
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            112356888888888899999999999999988531   11112246789999999999999999999999999875412


Q ss_pred             cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhh-hhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        318 YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       318 ~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~-~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      .. .......++|.+..++.+.++.+|..++++|+.++.....  ... ...++|.+.+++.+.++.+|..++.+++.+.
T Consensus       249 ~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          249 QP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             CC-CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CC-cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence            11 1234577899999999999999999999999999864221  112 2367899999999999999999999998876


Q ss_pred             hhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHH
Q psy14014        395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNAL  471 (615)
Q Consensus       395 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~  471 (615)
                      ...+  ...+..     +            ...+. |.+..++.++++.+|..++.+++.++.....   ..+...++|.
T Consensus       328 ~~~~--~~~~~~-----~------------~~~~l-~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~  387 (530)
T 1wa5_B          328 TGND--LQTQVV-----I------------NAGVL-PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP  387 (530)
T ss_dssp             TSCH--HHHHHH-----H------------HTTHH-HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             cCCH--HHHHHH-----H------------HcchH-HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence            4322  111111     0            00111 6778888899999999999999998752211   1123457888


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHhCh--HH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-----
Q psy14014        472 CMTWLVDHVYAIREAATLNLKKLVEQFGS--EW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT-----  540 (615)
Q Consensus       472 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~-----  540 (615)
                      +..++.+++..+|..|+.+++.++...++  +.    ....++|.|..++.++++.+|..++.++..+....+..     
T Consensus       388 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~  467 (530)
T 1wa5_B          388 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG  467 (530)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence            89999889999999999999999986543  22    22458999999999999999999999999998764331     


Q ss_pred             ----hH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        541 ----VT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       541 ----~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                          .+     ....++.|..+..+++++|+..+..++..+...
T Consensus       468 ~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          468 LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             CSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             ccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence                11     124578888899999999999999999888753

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=1.8e-19  Score=189.42  Aligned_cols=384  Identities=11%  Similarity=0.090  Sum_probs=277.6

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhCc---
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSGDTS-WRVRYMVADKFTDLQKAVGP---  278 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~---  278 (615)
                      -+|.+.+.+.++++.+|..|+.++..++..-+.    ......++|.+.+++.+++ +.+|..++.+|+.++.....   
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            356666666666777777777777776554331    1223346777777777765 78888888888877752110   


Q ss_pred             cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh-CCCCHHHHHHHHHHHHhhchh
Q psy14014        279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV-ADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~-~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      .......+|.+..++.+++++||..|+.+|+.++..-+ ..+........+|.+..++ .+.++.++..++++|..++..
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            11123578999999999999999999999999876321 2222223345788888888 788999999999999999875


Q ss_pred             hcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHH
Q psy14014        358 LGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVE  435 (615)
Q Consensus       358 ~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~  435 (615)
                      ...  ......++|.+.+++.+.++.++..++.+|..+......  ..+...-...+                  |.+..
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~~~~g~v------------------~~Lv~  293 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND--KIQAVIEAGVC------------------PRLVE  293 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHH--HHHHHHHTTCH------------------HHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH--HHHHHHHcCHH------------------HHHHH
Confidence            321  233457899999999999999999999999888643221  11111000111                  67888


Q ss_pred             hhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHhChHH----hhhch
Q psy14014        436 LAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDH-VYAIREAATLNLKKLVEQFGSEW----AQSTV  507 (615)
Q Consensus       436 ~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~----~~~~i  507 (615)
                      ++.++++.+|..++.+++.++.....   ......++|.+..++.++ +..+|..|+.+++.++.. ..+.    ....+
T Consensus       294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~  372 (528)
T 4b8j_A          294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGI  372 (528)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTC
T ss_pred             HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCC
Confidence            89999999999999999999763211   112245688899999888 899999999999999863 2221    22458


Q ss_pred             hHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh----
Q psy14014        508 IPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----  579 (615)
Q Consensus       508 ~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~----  579 (615)
                      +|.|..++.+.++.+|..++.++++++...++...    ...+++.|..++.++++.++..++.+|..++...+..    
T Consensus       373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~  452 (528)
T 4b8j_A          373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLA  452 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            89999999999999999999999999876444332    3468899999999999999999999999998654320    


Q ss_pred             -----hH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        580 -----VI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       580 -----~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                           .+     .....+.+..|.++++.+|+..|...+..+-
T Consensus       453 ~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~  495 (528)
T 4b8j_A          453 AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW  495 (528)
T ss_dssp             TCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             cccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                 11     2223456677888999999999999998764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.87  E-value=2.9e-19  Score=189.73  Aligned_cols=472  Identities=11%  Similarity=0.044  Sum_probs=322.9

Q ss_pred             chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHH
Q psy14014         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS  170 (615)
Q Consensus        91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~  170 (615)
                      +.+-..+++.+++...|...--.+..++..-  .++.-.+++.+..-..+++..+|..|+..++.+.   .+++.+.+.+
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~  145 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG  145 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            3333445556777778877777666665542  2233345566666666778888888888888775   3566677888


Q ss_pred             HHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-hHHHhHHHH
Q psy14014        171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-DVEQLVMPT  249 (615)
Q Consensus       171 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~  249 (615)
                      .+.+++.|+++.||+.|+.+++.+.+..+.  ....+++.+..++.|.++.|+..|+.++..+++.-++- .....++|.
T Consensus       146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~  223 (618)
T 1w63_A          146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ  223 (618)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            889999999999999999999999986543  23468888899999999999999999999987643221 112234454


Q ss_pred             HHHhcC---------------CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh------cCCcHHHHHHHHHHH
Q psy14014        250 LRQCSG---------------DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL------KDSEAEVRAAAANKV  308 (615)
Q Consensus       250 l~~~~~---------------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l  308 (615)
                      +.+.+.               .+++..+..+++.++.++..-+  .....+.+.+.+++      ++.+..|...|++++
T Consensus       224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i  301 (618)
T 1w63_A          224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTI  301 (618)
T ss_dssp             HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            443332               2467777888888887764211  11234555555544      234567888888888


Q ss_pred             HHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHH
Q psy14014        309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS  388 (615)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~  388 (615)
                      ..+..    .   ........+.+..++.++++.+|..++.+++.++...+  .......+.+..++.|++..||..+++
T Consensus       302 ~~l~~----~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~ale  372 (618)
T 1w63_A          302 MDIKS----E---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAME  372 (618)
T ss_dssp             HHSCC----C---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred             HhcCC----C---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHH
Confidence            76422    1   12234566778888899999999999999999876422  233445678888999999999999999


Q ss_pred             hhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHH
Q psy14014        389 NLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKL  468 (615)
Q Consensus       389 ~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  468 (615)
                      .+..++..-..+..         +                  +.+.+.+.+.+..+|..++..++.++..+.+.  ....
T Consensus       373 lL~~l~~~~nv~~i---------v------------------~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~  423 (618)
T 1w63_A          373 LSFALVNGNNIRGM---------M------------------KELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWH  423 (618)
T ss_dssp             HHHHHCCSSSTHHH---------H------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHH
T ss_pred             HHHHHcccccHHHH---------H------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHH
Confidence            88776543221110         1                  34555566677889999999999999987543  2334


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC--CCchHHHHHHHHHHHHHhhhChh------
Q psy14014        469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD--QNYLHRMTCLFCINVLAEACGPT------  540 (615)
Q Consensus       469 ~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~~R~~a~~~l~~l~~~~~~~------  540 (615)
                      ++.+++++.+....++..+...+..+..... + ....+++.+...+.+  ........+++++|+.+......      
T Consensus       424 v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~-l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~  501 (618)
T 1w63_A          424 IDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-E-MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEE  501 (618)
T ss_dssp             HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-S-THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSC
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhcCh-h-HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccc
Confidence            5666677766666677777777888876543 2 234466677666553  23334456899999998765320      


Q ss_pred             ---hHHHhhHHHHHhhCC--CCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        541 ---VTANFLLPTVLNMAG--DNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       541 ---~~~~~i~~~l~~~~~--D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                         .....+.+.+..+++  ..++.||..+..++..+....+.  ..+.+..++....+|.|.|||+.|.+.+..+..
T Consensus       502 ~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          502 PIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             CCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence               011234445555443  57889999999999999876542  256677788888899999999999999887653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=7.9e-19  Score=188.59  Aligned_cols=501  Identities=13%  Similarity=0.029  Sum_probs=301.7

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcch-hh--ccchhhhhhhcCCc-H-HHHHHHHHHhccccCCCCCcchh
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-TR--GELIPFLTETIYDE-D-EVLLALAEQLGTFTPNVGGPEYV   88 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~-~~--~~ll~~l~~~~~~~-~-~vr~~a~~~l~~l~~~~~~~~~~   88 (615)
                      .|..++.-++++|+.+|..|+..|..++....... ..  ...++.+.+.+.+. + ++|..++..|..+...   .+..
T Consensus        15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~---~~~~   91 (644)
T 2z6h_A           15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REGL   91 (644)
T ss_dssp             THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS---HHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---hhhH
Confidence            35555555666666666666666666654321110 11  12334444433321 2 3555555555544431   1111


Q ss_pred             -----hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh
Q psy14014         89 -----HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (615)
Q Consensus        89 -----~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~  163 (615)
                           ...+|.|..++.++++.+|..|+.+|.+++..-+...                                    ..
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~------------------------------------~~  135 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK------------------------------------MA  135 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH------------------------------------HH
T ss_pred             HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH------------------------------------HH
Confidence                 1234445555555555555555555555544332110                                    00


Q ss_pred             h-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcC
Q psy14014        164 V-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLS  238 (615)
Q Consensus       164 ~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~  238 (615)
                      + ....++.+..++++++++++..++.+|..++...+.   .......++.+..++++.+ ..++..+..++..++..-.
T Consensus       136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~  215 (644)
T 2z6h_A          136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS  215 (644)
T ss_dssp             HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc
Confidence            1 233567778888888899999999999888752211   2233456788888887654 5677788888887764322


Q ss_pred             hh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        239 QS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       239 ~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      ..  ......+|.+..++.+++..+|..++.+|..++...........++|.+.+++++.++++|..|+.+|..++..- 
T Consensus       216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-  294 (644)
T 2z6h_A          216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-  294 (644)
T ss_dssp             HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-
T ss_pred             cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence            11  122347889999999999999999999999998765444444578999999999999999999999999987632 


Q ss_pred             ccchhHHHHHhhHHHHHHhhCCC--CHHHHHHHHHHHHhhchhhcch------hhhhhhHHHHHHhhcCCC-hhHHHHHH
Q psy14014        317 AYNQENIIMTYILPYVKDLVADP--NQHVKSALASVIMGLSPILGKH------NTVDHLLPLFLSQLKDEC-PEVRLNII  387 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~~d~--~~~vR~~~~~~l~~l~~~~g~~------~~~~~l~p~l~~~l~d~~-~~vr~~a~  387 (615)
                      +..+........+|.|..++.+.  .+.+|..++.+|+.++..-+..      ......+|.+.+++.+.+ +.++..++
T Consensus       295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~  374 (644)
T 2z6h_A          295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV  374 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHH
Confidence            12222223345678888777653  3899999999999997532221      112357899999998765 69999999


Q ss_pred             HhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHH
Q psy14014        388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEK  467 (615)
Q Consensus       388 ~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  467 (615)
                      .++..+.....  .. +.+.-...+                  |.+.+++.+.++.+|..++.++..-           .
T Consensus       375 ~~L~nLa~~~~--~~-~~i~~~~~i------------------~~Lv~lL~~~~~~vr~~a~~al~n~-----------~  422 (644)
T 2z6h_A          375 GLIRNLALCPA--NH-APLREQGAI------------------PRLVQLLVRAHQDTQRRTSMGGTQQ-----------Q  422 (644)
T ss_dssp             HHHHHHTTSGG--GH-HHHHHTTHH------------------HHHHHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHccCHH--HH-HHHHHcCCH------------------HHHHHHHhccchhhhhHhhhccccc-----------h
Confidence            99988764321  11 111000112                  5566666666666666555543320           0


Q ss_pred             HHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hh-H
Q psy14014        468 LNALCMTWL-VDHVYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TV-T  542 (615)
Q Consensus       468 l~~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~-~  542 (615)
                             .. ......++..+..++..++..-...  ......+|.|.+++.++++.+|..++.++++++..-.. .. .
T Consensus       423 -------~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~  495 (644)
T 2z6h_A          423 -------FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE  495 (644)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -------hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence                   00 1124557777777777766422111  11234788888888888888888888888888743111 11 1


Q ss_pred             HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc
Q psy14014        543 ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  593 (615)
Q Consensus       543 ~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~  593 (615)
                      ....++.|..++.+++++||..++.+|..+...-+..+.......++..+.
T Consensus       496 ~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~  546 (644)
T 2z6h_A          496 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF  546 (644)
T ss_dssp             HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHS
T ss_pred             HcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHH
Confidence            234677888888888999999999999888754332222111245555554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=4e-19  Score=186.76  Aligned_cols=385  Identities=12%  Similarity=0.099  Sum_probs=290.0

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhc----hhhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcChh---
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE----VDYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLSQS---  240 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~---  240 (615)
                      ++.+...+.++++.+|..++..+..++....    .......++|.+.+++++++ +.+|..|+.+|..++...+..   
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            4555667788899999999999998876433    12345678999999998876 899999999999998743321   


Q ss_pred             hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLL-KDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      ......+|.+..++.++++.+|..++.+|+.++....   ........+|.+..++ .+.++.++..++.+|..++..-+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            1223588999999999999999999999999985311   1111235788888988 67889999999999999987642


Q ss_pred             ccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--h-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--N-TVDHLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                      ...  ......++|.+..++.+.++.++..++++|+.++......  . ....++|.+.+++.+.++.|+..|+.+|+.+
T Consensus       236 ~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          236 QPS--FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             CCC--HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCc--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            221  2345778999999999999999999999999998543221  1 1235789999999999999999999999988


Q ss_pred             hhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhhCh---HhHHHHHH
Q psy14014        394 NEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQLGV---EFFDEKLN  469 (615)
Q Consensus       394 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~  469 (615)
                      ....  ....+..  ++               ..+. |.+..++.++ ++.+|..++.++..++.....   ..+...++
T Consensus       314 ~~~~--~~~~~~~--~~---------------~~~l-~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i  373 (528)
T 4b8j_A          314 VTGD--DAQTQCI--ID---------------HQAL-PCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII  373 (528)
T ss_dssp             TTSC--HHHHHHH--HT---------------TTHH-HHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred             HcCC--HHHHHHH--HH---------------hhhH-HHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence            6532  1111111  00               0011 6777888888 899999999999999863211   11234577


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh----hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-----
Q psy14014        470 ALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA----QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT-----  540 (615)
Q Consensus       470 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~-----  540 (615)
                      |.+..++.+.+..+|..|+.+++.++..-+++..    ...+++.|.+++.++++.++..++.+++.+....+..     
T Consensus       374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~  453 (528)
T 4b8j_A          374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA  453 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            8899999888999999999999999986434321    2458899999999999999999999999998654321     


Q ss_pred             ----hH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        541 ----VT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       541 ----~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                          .+     ....++.+..+..+++++++..+..++..+...
T Consensus       454 ~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          454 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence                11     123567788888999999999999999988754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.86  E-value=7.4e-19  Score=185.10  Aligned_cols=404  Identities=13%  Similarity=-0.001  Sum_probs=259.3

Q ss_pred             HHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh---hh-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhh
Q psy14014        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA---GV-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDY  202 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~  202 (615)
                      .+|.+..+..+++..++..++..+..++..-.+   .+ ....++.+..++.++++++|..++.++..++..-+   ...
T Consensus       102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i  181 (529)
T 1jdh_A          102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII  181 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            344444444444444444444444444322111   11 23466777888889999999999999988875211   122


Q ss_pred             hHhhhHHHHHHhhccCch-hHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc
Q psy14014        203 LKTDIIPMFVNLAQDEQD-SVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE  279 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~  279 (615)
                      .....+|.+..++++.+. .++..+..++..++..-...  ......+|.+..++.+++..++..++.++..++...+..
T Consensus       182 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  261 (529)
T 1jdh_A          182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ  261 (529)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh
Confidence            334567778888776654 45556677777776432211  112357889999999999999999999999998765444


Q ss_pred             chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC--CCHHHHHHHHHHHHhhchh
Q psy14014        280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD--PNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       280 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d--~~~~vR~~~~~~l~~l~~~  357 (615)
                      .....++|.+.+++.++++++|..|+.+|..++..- ++.+........+|.+.+++.+  .++.+|..++.+++.++..
T Consensus       262 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            344578999999999999999999999999987632 1222223334567777777754  4589999999999999754


Q ss_pred             hcch-----h-hhhhhHHHHHHhhcCCC-hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhh
Q psy14014        358 LGKH-----N-TVDHLLPLFLSQLKDEC-PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA  430 (615)
Q Consensus       358 ~g~~-----~-~~~~l~p~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~  430 (615)
                      -+..     . .....+|.+.+++++++ +.++..++.++..+....  ... ...  .               ...+. 
T Consensus       341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~--~~~-~~~--~---------------~~~~i-  399 (529)
T 1jdh_A          341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANH-APL--R---------------EQGAI-  399 (529)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG--GGH-HHH--H---------------HTTHH-
T ss_pred             CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh--hhh-HHH--H---------------HcCCH-
Confidence            2221     1 12246899999999876 599999999988876422  111 111  0               01111 


Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh--HHhhhchh
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS--EWAQSTVI  508 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~  508 (615)
                      |.+.+++++.++.+|..++.++....-..|                 .....++..++.++..++..-..  .......+
T Consensus       400 ~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~-----------------~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v  462 (529)
T 1jdh_A          400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTI  462 (529)
T ss_dssp             HHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhHHHHHHHhcccCchhhhcc-----------------ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCc
Confidence            566777777788888888877665211111                 11233455566666666532110  11224578


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhC--hhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHH
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI  572 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l  572 (615)
                      |.+..++.++++.+|..++.++++++..-.  ........++.|.+++.+++++||..+..+|.++
T Consensus       463 ~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          463 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999874211  1112346788999999999999999999999886

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.82  E-value=9.7e-18  Score=178.04  Aligned_cols=506  Identities=11%  Similarity=0.038  Sum_probs=340.6

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhch
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      .++.+-..+++++...|..+++.+-.+- ..|.+ . ..+.+-+.+++.+++ +.|+..--.+..+++.  .++...-.+
T Consensus        35 e~~~ir~~l~~~~~~~k~~~l~kli~~~-~~G~d-~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~i  109 (618)
T 1w63_A           35 ECAAIRSSFREEDNTYRCRNVAKLLYMH-MLGYP-A-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMT  109 (618)
T ss_dssp             HHHHHHHHHTTTCTTTHHHHHHHHHHHH-HTTCC-C-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHH-HcCCC-C-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHH
Confidence            3556667888888778888877777663 34554 2 223333444555555 6888777677766652  233334456


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH
Q psy14014         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (615)
Q Consensus        93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  172 (615)
                      +.|.+-+.++++.+|-.|+.+++.+..    ..+.+.++|.+.++..+.+..+|+.|+..+..++...++ ..+.+++.+
T Consensus       110 n~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l  184 (618)
T 1w63_A          110 NCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPAT  184 (618)
T ss_dssp             HHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGT
T ss_pred             HHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHH
Confidence            677777889999999999999998862    345567888888888899999999999999888765443 334677778


Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhch-hhhHhhhHHHHHHhhcc---------------CchhHHHHHHHHHHHHHhh
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVNLAQD---------------EQDSVRLLAVEACVSIASL  236 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d---------------~~~~vr~~a~~~l~~l~~~  236 (615)
                      ..++.|.++.|+..++.++..++..-+. ......++|.+...+++               .+++.+...++++..++..
T Consensus       185 ~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~  264 (618)
T 1w63_A          185 KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN  264 (618)
T ss_dssp             TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence            8889999999999999999998764322 11233556666655543               4788888888888887754


Q ss_pred             cChhhHHHhHHHHHHHhc------CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14014        237 LSQSDVEQLVMPTLRQCS------GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRD  310 (615)
Q Consensus       237 ~~~~~~~~~l~~~l~~~~------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  310 (615)
                      -+.  ....+.+.+.+++      ++.+..|...+++++..+..   .........+.+..++.++++++|..|+.++..
T Consensus       265 ~~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~  339 (618)
T 1w63_A          265 DDD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLK  339 (618)
T ss_dssp             CHH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHH
T ss_pred             CHH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            322  2334455555543      23445788888887776421   111122466778888999999999999999999


Q ss_pred             HHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014        311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL  390 (615)
Q Consensus       311 ~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l  390 (615)
                      ++..-+      .......+.+..++.|++..+|..+++.+..++..-.    .+.+++.+.+.+.+.+.++|..++.++
T Consensus       340 i~~~~p------~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I  409 (618)
T 1w63_A          340 TVQTDH------NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGI  409 (618)
T ss_dssp             HHHHHH------HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHhhCH------HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            987532      2334455677778899999999999999988875322    345677778888888899999999999


Q ss_pred             hHhhhhhc-hhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHH
Q psy14014        391 DCVNEVIG-IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN  469 (615)
Q Consensus       391 ~~l~~~~~-~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  469 (615)
                      +.+...+. ...|-        +                  +.+.+++++....++..++..+..+......  .....+
T Consensus       410 ~~la~k~~~~~~~~--------v------------------~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v  461 (618)
T 1w63_A          410 FLAAEKYAPSKRWH--------I------------------DTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTV  461 (618)
T ss_dssp             HHHHHSSCCCHHHH--------H------------------HHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHH
T ss_pred             HHHHHHhCccHHHH--------H------------------HHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHH
Confidence            99887653 22232        2                  3344444444434444455555555543321  123344


Q ss_pred             HHHHHhcCC--cchHHHHHHHHHHHHHHHHhChH---------HhhhchhHHHHhhhc--CCCchHHHHHHHHHHHHHhh
Q psy14014        470 ALCMTWLVD--HVYAIREAATLNLKKLVEQFGSE---------WAQSTVIPKVVAMSR--DQNYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       470 ~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~~~~--d~~~~~R~~a~~~l~~l~~~  536 (615)
                      +.+...+.+  ....+...+++++|..+..+...         .....+++.+..+++  ..++.+|..++.++..+...
T Consensus       462 ~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~  541 (618)
T 1w63_A          462 QRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR  541 (618)
T ss_dssp             HHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            444444442  23345557899999998765320         011224455555544  56889999999999999876


Q ss_pred             hChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        537 CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       537 ~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      .+..  .+.+...|..+..|.+.+||..|...+.-+..
T Consensus       542 ~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          542 FTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             CSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             Ccch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            6432  45566677777899999999999988777643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.80  E-value=3.1e-16  Score=165.76  Aligned_cols=475  Identities=11%  Similarity=0.050  Sum_probs=303.6

Q ss_pred             hHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (615)
Q Consensus        92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~  171 (615)
                      .+....++.+++...|..+--++..+++.-+  +..-.+++.+..=..+++..+|..|...++.+.   .+++.+.+.+.
T Consensus        76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l~~~  150 (621)
T 2vgl_A           76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAFAGE  150 (621)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHHTTH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHHHHH
Confidence            3333445566667777777666666554332  222233444444445566667777777776663   35566777788


Q ss_pred             HHHHh--CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHH
Q psy14014        172 FRNLC--QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVM  247 (615)
Q Consensus       172 l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~  247 (615)
                      +.+++  .|.++.||+.|+.++..+.+..+.....+.+++.+.+++.|.++.|+.+|+..+..++..-+..  ...+.++
T Consensus       151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~  230 (621)
T 2vgl_A          151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAV  230 (621)
T ss_dssp             HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            88888  9999999999999999999865432212378899999999999999999999999988764431  1234455


Q ss_pred             HHHHHhcCCC-------------ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh---cC---------CcH--HH
Q psy14014        248 PTLRQCSGDT-------------SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL---KD---------SEA--EV  300 (615)
Q Consensus       248 ~~l~~~~~d~-------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d---------~~~--~v  300 (615)
                      ..+.+++.+.             ++..+..+++.++.++..- +......+.+.+...+   .+         .+.  .|
T Consensus       231 ~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV  309 (621)
T 2vgl_A          231 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV  309 (621)
T ss_dssp             HHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHH
Confidence            5555554221             4567777776666554210 0011122333332222   22         122  56


Q ss_pred             HHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc-CCC
Q psy14014        301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DEC  379 (615)
Q Consensus       301 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~-d~~  379 (615)
                      .-.+++++-.+.    +.   ..+.....+.+..++.++++.+|..++.++..++...+.........+.+..++. |++
T Consensus       310 l~ea~~~i~~l~----~~---~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d  382 (621)
T 2vgl_A          310 LFEAISLIIHHD----SE---PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD  382 (621)
T ss_dssp             HHHHHHHHHHHC----CC---HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcC----Cc---HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC
Confidence            666666665543    11   1345567778888888999999999999999998765433344556778888888 999


Q ss_pred             hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh
Q psy14014        380 PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL  459 (615)
Q Consensus       380 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~  459 (615)
                      ..||..+++.+..++..   ..+..-      +                  ..+.+.+.+.+..+|..++..++.++..+
T Consensus       383 ~~Ir~~aL~lL~~l~~~---~Nv~~I------v------------------~eL~~yl~~~d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          383 VSVRQRAVDLLYAMCDR---SNAQQI------V------------------AEMLSYLETADYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             HHHHHHHHHHHHHHCCH---HHHHHH------H------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHcCh---hhHHHH------H------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            99999999887766432   212111      1                  34455556677789999999999999877


Q ss_pred             ChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCch--HHHHHHHHHHHHHhhh
Q psy14014        460 GVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYL--HRMTCLFCINVLAEAC  537 (615)
Q Consensus       460 ~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~--~R~~a~~~l~~l~~~~  537 (615)
                      .+..  +..+..+++++.+....+...+...+..++.....  .....+..+.+.+.++...  .-..+++.+|+.+...
T Consensus       436 ~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~  511 (621)
T 2vgl_A          436 AVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLI  511 (621)
T ss_dssp             CSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHH
T ss_pred             CCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHh
Confidence            6431  23444555555544333555555666666544321  2344666777777777543  3345669999987654


Q ss_pred             Chhh-H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcC--CCCccHHHHHHHHHHHHh
Q psy14014        538 GPTV-T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG--DTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       538 ~~~~-~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~--d~d~~v~~~a~~a~~~~~  612 (615)
                      .... . ...++..+.+...+..+.||..+..++..+....+  ...+.+..++.....  |.|.|||+.|.+-...+.
T Consensus       512 ~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p--~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          512 AGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP--EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             HSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            3211 0 01234455555568889999999999999876543  334566777766666  999999999999887764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.80  E-value=7.8e-17  Score=167.53  Aligned_cols=383  Identities=12%  Similarity=0.130  Sum_probs=272.6

Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCcc---
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGPE---  279 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~---  279 (615)
                      ++-+.+.++.++.+.+..|+..+..+...-..    ..+...++|.|.++++. .++.++..++.+|++++..-...   
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            55566677778888888888877776543222    22334578888888864 45788999999999987532111   


Q ss_pred             chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC-----HHHHHHHHHHHHhh
Q psy14014        280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN-----QHVKSALASVIMGL  354 (615)
Q Consensus       280 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~-----~~vR~~~~~~l~~l  354 (615)
                      ......+|.|..++++++++||+.|+.+|+.++..-+ ..+........++.+..++.+++     ..+++.+++++..+
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~-~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS-AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            1223578999999999999999999999999886422 22222334457788888887654     34677788888888


Q ss_pred             chhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhH
Q psy14014        355 SPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL  431 (615)
Q Consensus       355 ~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~  431 (615)
                      +..-..   -.....++|.+.+++.+.+++++..++.+|..+......  ..+..  .+               ..+. |
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i--~~---------------~g~i-~  277 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE--RIEMV--VK---------------KGVV-P  277 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH--HHHHH--HT---------------TTCH-H
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh--hHHHH--Hh---------------cccc-h
Confidence            754222   122456899999999999999999999999887643211  11110  00               0011 6


Q ss_pred             HHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhhh
Q psy14014        432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQS  505 (615)
Q Consensus       432 ~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~  505 (615)
                      .+.+++.+++..++..++.+++.++..-..   .......++.+..++.+++..+|..|+.+++.++.....   .....
T Consensus       278 ~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~  357 (510)
T 3ul1_B          278 QLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH  357 (510)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             hhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence            778889999999999999999988642211   112234566777888999999999999999999753211   11224


Q ss_pred             chhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---
Q psy14014        506 TVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---  578 (615)
Q Consensus       506 ~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~---  578 (615)
                      .++|.+..++.+.++.+|..|++++++++.....+.    ....+++.|..++..+++.++..+..+|..+....+.   
T Consensus       358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~  437 (510)
T 3ul1_B          358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE  437 (510)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccc
Confidence            588999999999999999999999999987655443    2356889999999999999999999999999865421   


Q ss_pred             -hhH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        579 -NVI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       579 -~~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                       +.+     .......++.|..+++.+|++.|...++.+
T Consensus       438 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  476 (510)
T 3ul1_B          438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  476 (510)
T ss_dssp             HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             111     122456678888999999999999988764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.79  E-value=2.2e-16  Score=165.20  Aligned_cols=384  Identities=12%  Similarity=0.121  Sum_probs=269.7

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc--
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE--  279 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~--  279 (615)
                      .++.+.+.++.++.+.+..|+..+..+...-..    ..+...++|.|.+++. +.++.++..++.+|+.++..-...  
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345555666666777777777766665432221    1223457788888775 455778888888888887532111  


Q ss_pred             -chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC-----HHHHHHHHHHHHh
Q psy14014        280 -ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN-----QHVKSALASVIMG  353 (615)
Q Consensus       280 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~-----~~vR~~~~~~l~~  353 (615)
                       ......+|.|..++.++++++|..|+.+|+.++..- ++.+........+|.+..++.+++     ..+.+.+++++..
T Consensus       157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence             123357899999999999999999999999987632 222222334457788888887654     3456778888888


Q ss_pred             hchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhh
Q psy14014        354 LSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA  430 (615)
Q Consensus       354 l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~  430 (615)
                      ++..-..   ......++|.+.+++.+.+++++..++.+|..+......  ..+..     .    .        ..+. 
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~v-----~----~--------~g~i-  295 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE--RIEMV-----V----K--------KGVV-  295 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH--HHHHH-----H----T--------TTCH-
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh--hHHHH-----H----h--------ccch-
Confidence            7653221   123456899999999999999999999999877643221  11110     0    0        0011 


Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhh
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQ  504 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~  504 (615)
                      |.+..++.++++.++..++.+++.++..-..   .......++.+..++.+++..+|..|+.+++.++.....   ....
T Consensus       296 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~  375 (529)
T 3tpo_A          296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN  375 (529)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            6778889999999999999999988642211   112334677888999999999999999999999753211   1122


Q ss_pred             hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--
Q psy14014        505 STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--  578 (615)
Q Consensus       505 ~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--  578 (615)
                      ..++|.+..++.++++.+|..|+++|++++....++.    ....++|.|..++..+++.++..+..+|..+....+.  
T Consensus       376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~  455 (529)
T 3tpo_A          376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG  455 (529)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc
Confidence            3588999999999999999999999999987655442    2346889999999999999999999999999865421  


Q ss_pred             --hhHHh-----hHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        579 --NVIQS-----QVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       579 --~~~~~-----~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                        +.+..     .....++.|..+++.+|++.|...++.+
T Consensus       456 ~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          456 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  495 (529)
T ss_dssp             CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence              11111     2345677788899999999999988764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.78  E-value=5.7e-16  Score=161.04  Aligned_cols=383  Identities=11%  Similarity=0.066  Sum_probs=278.2

Q ss_pred             HHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChh---hH
Q psy14014        171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---DV  242 (615)
Q Consensus       171 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~~  242 (615)
                      .+.+.+.+.+++++..++..+..+...-..    ......++|.+.++++ ++++.++..|..+|..++...+..   ..
T Consensus        61 ~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv  140 (510)
T 3ul1_B           61 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV  140 (510)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            345666888999999999988887643221    3345578999999987 456789999999999998654432   12


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCc-----HHHHHHHHHHHHHHHhh
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSE-----AEVRAAAANKVRDFCQN  314 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~~~~~  314 (615)
                      ....+|.+.+++.+++..+|..++.+|++++....   ........++.+..++.+.+     ..+...+..++..++..
T Consensus       141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~  220 (510)
T 3ul1_B          141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  220 (510)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence            23478999999999999999999999999974211   11122356788888887654     34566788888887764


Q ss_pred             ccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hh-hhhhhHHHHHHhhcCCChhHHHHHHHhhh
Q psy14014        315 LDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HN-TVDHLLPLFLSQLKDECPEVRLNIISNLD  391 (615)
Q Consensus       315 ~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~  391 (615)
                      -.+.. .......++|.|.+++.+.++.++..+++++..++..-..  .. ....++|.+.+++.+.+..++..++.+++
T Consensus       221 ~~~~~-~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~  299 (510)
T 3ul1_B          221 KNPAP-PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  299 (510)
T ss_dssp             CSSCC-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             ccchh-HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence            32221 1123567899999999999999999999999999864221  11 12357899999999999999999999998


Q ss_pred             HhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHH
Q psy14014        392 CVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKL  468 (615)
Q Consensus       392 ~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l  468 (615)
                      .+....  +.......-...+                  +.+..++++++..+|..++.++..++..-..   ......+
T Consensus       300 nl~~~~--~~~~~~i~~~g~l------------------~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~  359 (510)
T 3ul1_B          300 NIVTGT--DEQTQKVIDAGAL------------------AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL  359 (510)
T ss_dssp             HHTTSC--HHHHHHHHHTTGG------------------GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             HhhcCC--HHHHHHHhhccch------------------HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC
Confidence            875432  2222211000111                  4556677888899999999999998653211   1233468


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---Ch-h
Q psy14014        469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GP-T  540 (615)
Q Consensus       469 ~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~-~  540 (615)
                      +|.+..++.+.+..+|..|+.+++.++.....+.    ....+++.|.+++.++++.++..++.+|.++.+..   +. .
T Consensus       360 i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~  439 (510)
T 3ul1_B          360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETE  439 (510)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchH
Confidence            8999999999999999999999999987644432    22458899999999999999999999999987643   21 1


Q ss_pred             hH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        541 VT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       541 ~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      .+     ....+..+..+..+++.+|+..|...+.+.+.
T Consensus       440 ~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          440 KLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            11     12456788888899999999999999888764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.77  E-value=1.4e-15  Score=159.18  Aligned_cols=384  Identities=11%  Similarity=0.069  Sum_probs=277.4

Q ss_pred             HHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChh---h
Q psy14014        170 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---D  241 (615)
Q Consensus       170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~  241 (615)
                      +.+.+.+...++..+..++..+..+...-..    ......++|.+.++++ ++++.++..|..+|..++...+..   .
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3345566777888888888887776532211    2345678999999886 556889999999999998765432   1


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCc-----HHHHHHHHHHHHHHHh
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSE-----AEVRAAAANKVRDFCQ  313 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~~~~  313 (615)
                      .....+|.+..++.+++..+|..++.+|+.++..-   .........++.+..++.+.+     ..+...++.++..++.
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            23347899999999999999999999999997421   111122356788888887654     3456678888888776


Q ss_pred             hccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--h-hhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014        314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--H-NTVDHLLPLFLSQLKDECPEVRLNIISNL  390 (615)
Q Consensus       314 ~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~-~~~~~l~p~l~~~l~d~~~~vr~~a~~~l  390 (615)
                      .-.+.. .......++|.|..++.+.++.++..++++|..++.....  . .....++|.+.+++.+.++.++..++.++
T Consensus       239 ~~~~~~-~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          239 NKNPAP-PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCTTCC-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             cccchh-hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            432221 1134567899999999999999999999999998764221  1 11235789999999999999999999999


Q ss_pred             hHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHH
Q psy14014        391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEK  467 (615)
Q Consensus       391 ~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~  467 (615)
                      +.+...  .+.......-...+                  +.+..++++++..+|..++.++..++..-..   ......
T Consensus       318 ~nl~~~--~~~~~~~i~~~g~l------------------~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g  377 (529)
T 3tpo_A          318 GNIVTG--TDEQTQKVIDAGAL------------------AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG  377 (529)
T ss_dssp             HHHTTS--CHHHHHHHHHTTGG------------------GGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHcc--chHHHHHHhhcccH------------------HHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence            887542  22222211000111                  5777888899999999999999999753211   123345


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---Ch-
Q psy14014        468 LNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GP-  539 (615)
Q Consensus       468 l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~-  539 (615)
                      ++|.+..++.+.+..+|..|+.+++.++.....+.    ....+++.|.+++.++++.++..++.+|.++....   +. 
T Consensus       378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~  457 (529)
T 3tpo_A          378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGET  457 (529)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccCh
Confidence            88999999999999999999999999987644432    12348999999999999999999999999987542   21 


Q ss_pred             hhH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014        540 TVT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       540 ~~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~  574 (615)
                      ..+     ....+..+..+..+++.+|+..|...+...+.
T Consensus       458 ~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          458 EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            111     12356778888899999999999999888754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.77  E-value=1.4e-14  Score=162.88  Aligned_cols=557  Identities=11%  Similarity=0.079  Sum_probs=327.1

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCC----Ccch----
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG----GPEY----   87 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~----~~~~----   87 (615)
                      .++..+.+++..+|..+...++.++..-.++ .|++++|.+.+.+++++. .+..+..++..+.+...    .++.    
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l  167 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI  167 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence            4556667777889999999999999886665 799999999998887664 67777777777665321    1111    


Q ss_pred             ---h----hhchHHHhhh---hcCchh---HHH------HHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcC-----
Q psy14014         88 ---V----HCLLPPLESL---ATVEET---VVR------DKAVESLRLISAQHSPHDLEA---HFVPLVQRLASG-----  140 (615)
Q Consensus        88 ---~----~~l~~~l~~l---~~~~~~---~vr------~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~-----  140 (615)
                         .    +.++.++..+   +.++..   .+|      ..++.++..+...--++....   ..++.+..+...     
T Consensus       168 ~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~  247 (960)
T 1wa5_C          168 KLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL  247 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence               1    1122333222   333221   233      234444444332222222222   234444443321     


Q ss_pred             -----CC-----cchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhC-----CCChHHHHHHHHhHHHHHHHhc-h-
Q psy14014        141 -----DW-----FTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQ-----DDTPMVRRAAAGKLGELAKVVE-V-  200 (615)
Q Consensus       141 -----~~-----~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~-----d~~~~vR~~a~~~l~~l~~~~~-~-  200 (615)
                           +.     ..+|+.++..+..+.....+..   ...+++.+...+.     ..+..++..+++.+..+++.-. . 
T Consensus       248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~  327 (960)
T 1wa5_C          248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE  327 (960)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred             cCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence                 01     2356666777766655444333   3345555555443     4567889999998888764311 0 


Q ss_pred             ----hhhHhhhH-HHHHHhhc-----------------------cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q psy14014        201 ----DYLKTDII-PMFVNLAQ-----------------------DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ  252 (615)
Q Consensus       201 ----~~~~~~ll-~~l~~~~~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  252 (615)
                          ..+...++ +.+...+.                       ++.+.+|.+|..++..++...+ +...+.+++.+.+
T Consensus       328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~  406 (960)
T 1wa5_C          328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKG  406 (960)
T ss_dssp             GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred             HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHH
Confidence                12223333 23322221                       1123689999999999999988 5556667777766


Q ss_pred             hcC------CCChHHHHHHHHHHHHHHHHhC-cc-chhh-----hHHH----HHHHhhcCC---cHHHHHHHHHHHHHHH
Q psy14014        253 CSG------DTSWRVRYMVADKFTDLQKAVG-PE-ITKT-----DLVQ----AFQMLLKDS---EAEVRAAAANKVRDFC  312 (615)
Q Consensus       253 ~~~------d~~~~vR~~~~~~l~~l~~~~~-~~-~~~~-----~l~~----~l~~~l~d~---~~~vr~~a~~~l~~~~  312 (615)
                      .+.      +++|+.|.+++.+++.++.... .+ ....     .+.+    .+...+.|+   ++-||..|+..++.+.
T Consensus       407 ~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~  486 (960)
T 1wa5_C          407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR  486 (960)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG
T ss_pred             HHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHH
Confidence            554      6789999999999999986421 11 0000     3333    334445677   8999999999999999


Q ss_pred             hhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc----------ch---hhhhhhHHHHHHhhcCCC
Q psy14014        313 QNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG----------KH---NTVDHLLPLFLSQLKDEC  379 (615)
Q Consensus       313 ~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g----------~~---~~~~~l~p~l~~~l~d~~  379 (615)
                      ..+++     .+...++|.+.+.+.|++..||..++.++..+++...          .+   .+.+.+++.+..+++...
T Consensus       487 ~~~~~-----~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~  561 (960)
T 1wa5_C          487 NQLTK-----AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG  561 (960)
T ss_dssp             GGSCH-----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTC
T ss_pred             hhCCH-----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhcc
Confidence            88743     3577889999999999999999999999999887422          22   234455555666665431


Q ss_pred             -----hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhH
Q psy14014        380 -----PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMP  453 (615)
Q Consensus       380 -----~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~  453 (615)
                           ......+.++++.++...+.. ..      .|.+.+..         .+. ..+....++ .+...+...+++++
T Consensus       562 ~~~~~~~~~e~l~~al~~vv~~~~~~-~~------p~~~~l~~---------~L~-~~l~~~~~~~~~~~~~~~~~e~l~  624 (960)
T 1wa5_C          562 SSPEKLAENEFLMRSIFRVLQTSEDS-IQ------PLFPQLLA---------QFI-EIVTIMAKNPSNPRFTHYTFESIG  624 (960)
T ss_dssp             CCHHHHTSCHHHHHHHHHHHHHHTTT-TG------GGHHHHHH---------HHH-HHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             CCCCcccccHHHHHHHHHHHHHHHHh-hh------hHHHHHHH---------HHH-HHHHHHHhCCCCcHHHHHHHHHHH
Confidence                 113356666666666555431 10      11111110         000 122222233 35567778899999


Q ss_pred             HHHhhhChHh---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHH--hhhcCCCchHHHHHH
Q psy14014        454 LLAGQLGVEF---FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVV--AMSRDQNYLHRMTCL  527 (615)
Q Consensus       454 ~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~--~~~~d~~~~~R~~a~  527 (615)
                      .++...+++.   +.+.++|.+...+..........+...++.+...... ......++|.+.  .....+.  .-...+
T Consensus       625 ~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~  702 (960)
T 1wa5_C          625 AILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG--NIPAVT  702 (960)
T ss_dssp             HHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT--THHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC--CchhHH
Confidence            9988766543   4577888888887766667888899988888876411 112234667776  5554432  122445


Q ss_pred             HHHHHHHhhhChhhH-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhh----hcCCCCccHH
Q psy14014        528 FCINVLAEACGPTVT-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK----LNGDTDVDVK  601 (615)
Q Consensus       528 ~~l~~l~~~~~~~~~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----l~~d~d~~v~  601 (615)
                      .++..+....+.... .+.++..+.+++.++..  ...++..++.+...++...+.+.+.+++..    +..++....+
T Consensus       703 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~  779 (960)
T 1wa5_C          703 RLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYV  779 (960)
T ss_dssp             HHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHH
Confidence            556665544332221 13455556666666553  378899999988877755344555554444    3344444444

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.75  E-value=3.8e-14  Score=159.27  Aligned_cols=560  Identities=10%  Similarity=0.055  Sum_probs=331.5

Q ss_pred             ccHHHHHHHHhcHHHHHHHh----------Ccc---hhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhc
Q psy14014         25 EDVQLRLNSIKKLSTIALAL----------GQE---RTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCL   91 (615)
Q Consensus        25 ~d~~~R~~a~~~l~~~~~~~----------~~~---~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l   91 (615)
                      .+..+|..|...|.......          +++   .++..+++.+.   ..+..+|..++.++..++..-. ++.|+.+
T Consensus        49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~---~~~~~ir~~l~~~ia~ia~~d~-p~~Wp~l  124 (960)
T 1wa5_C           49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMI---SLPNNLQVQIGEAISSIADSDF-PDRWPTL  124 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHS-TTTCTTH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhC-ccchhHH
Confidence            46778999998888876542          111   12333333332   2334599999999999886422 3578999


Q ss_pred             hHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh----hH--------Hhhh---HHHHHHHh---hcCCCc---chh----
Q psy14014         92 LPPLESLATVEETVVRDKAVESLRLISAQHSP----HD--------LEAH---FVPLVQRL---ASGDWF---TSR----  146 (615)
Q Consensus        92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~--------~~~~---~l~~l~~l---~~~~~~---~~r----  146 (615)
                      +|.|.+.+++++...+..++.++..+++....    +.        +...   ++.++..+   ..+...   ..|    
T Consensus       125 l~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~  204 (960)
T 1wa5_C          125 LSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD  204 (960)
T ss_dssp             HHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999998888888999999999999986531    11        1111   12222222   333211   123    


Q ss_pred             --hhHHhhhhhhc-cCCChhh---HHHHHHHHHHHhCC-----------CC----hHHHHHHHHhHHHHHHHhchh--hh
Q psy14014        147 --TSACGLFSVCY-PRVTAGV---KAELRSHFRNLCQD-----------DT----PMVRRAAAGKLGELAKVVEVD--YL  203 (615)
Q Consensus       147 --~~a~~~l~~~~-~~~~~~~---~~~l~~~l~~l~~d-----------~~----~~vR~~a~~~l~~l~~~~~~~--~~  203 (615)
                        ..+++++..+. ...++..   ...+++.+.+++..           .+    +.+|+.+++++..+++..+..  .+
T Consensus       205 ~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~  284 (960)
T 1wa5_C          205 VLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPM  284 (960)
T ss_dssp             HHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12333333321 2334322   24455666655421           11    468999999999888766542  23


Q ss_pred             HhhhHHHHHHhhc-----cCchhHHHHHHHHHHHHHhhcC------hhhHHHhHH-HHHHHhc-----------------
Q psy14014        204 KTDIIPMFVNLAQ-----DEQDSVRLLAVEACVSIASLLS------QSDVEQLVM-PTLRQCS-----------------  254 (615)
Q Consensus       204 ~~~ll~~l~~~~~-----d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~-~~l~~~~-----------------  254 (615)
                      ...+++.+.+.+.     ..++.++..+++.|..+++.-.      ...+.+.++ +.+...+                 
T Consensus       285 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~  364 (960)
T 1wa5_C          285 INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY  364 (960)
T ss_dssp             HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence            4455666665554     3467889999999988865321      112222222 2222111                 


Q ss_pred             ------CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc------CCcHHHHHHHHHHHHHHHhhcc-c----
Q psy14014        255 ------GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK------DSEAEVRAAAANKVRDFCQNLD-A----  317 (615)
Q Consensus       255 ------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~-~----  317 (615)
                            .+..|..|.++...+..++..+++ ...+.+++.+.+.+.      ++++..|.+|+.+++.++.... .    
T Consensus       365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~  443 (960)
T 1wa5_C          365 IRRDLEGSDTDTRRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGV  443 (960)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBC
T ss_pred             HHhccCcccccCcHHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCc
Confidence                  122356899999999999998773 334556666666665      6778999999999999976421 1    


Q ss_pred             c------chhHHHHHhhHHHHHHhhCCC---CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHH
Q psy14014        318 Y------NQENIIMTYILPYVKDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS  388 (615)
Q Consensus       318 ~------~~~~~~~~~l~p~l~~~~~d~---~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~  388 (615)
                      .      .....+.+.++|.    ++|+   ++.||..++++++.+++.+.+ .....++|.+.+.+.|++..||..|+.
T Consensus       444 ~~~~~~~~l~~~l~~~v~p~----l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~  518 (960)
T 1wa5_C          444 SSTNNLLNVVDFFTKEIAPD----LTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTYAAI  518 (960)
T ss_dssp             CCBCTTCCHHHHHHHHTHHH----HHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHhHHH----hcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            1      1111222334443    4556   899999999999999988753 456778899999999988999999999


Q ss_pred             hhhHhhhhhc-----hhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCC-----chHHHHHHHHhHHHHhh
Q psy14014        389 NLDCVNEVIG-----IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSK-----WRVRLAIIEYMPLLAGQ  458 (615)
Q Consensus       389 ~l~~l~~~~~-----~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~-----~~vr~~~~~~l~~l~~~  458 (615)
                      ++..+.+...     ....... .+   .         +|+...+  +.+..+++...     ......+.+++..++..
T Consensus       519 Al~~~~~~~~~~~~~~~~~~~~-~l---~---------p~l~~ll--~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~  583 (960)
T 1wa5_C          519 TIEKILTIRESNTSPAFIFHKE-DI---S---------NSTEILL--KNLIALILKHGSSPEKLAENEFLMRSIFRVLQT  583 (960)
T ss_dssp             HHHHHTTCBSCSSSCCBSSCGG-GT---T---------TTHHHHH--HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccccccHH-Hh---h---------hhHHHHH--HHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence            9998876421     0000000 00   1         1111111  23444444321     11235677788887776


Q ss_pred             hChHh--HHHHHHHHHHHhc----CC-cchHHHHHHHHHHHHHHHHhChHH---hhhchhHHHHhhhcCCCchHHHHHHH
Q psy14014        459 LGVEF--FDEKLNALCMTWL----VD-HVYAIREAATLNLKKLVEQFGSEW---AQSTVIPKVVAMSRDQNYLHRMTCLF  528 (615)
Q Consensus       459 ~~~~~--~~~~l~~~l~~~l----~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~~R~~a~~  528 (615)
                      ++.++  +.+.+++.+...+    .+ .+...+...+.+++.++...+++.   +.+.++|.+...+..........+..
T Consensus       584 ~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~  663 (960)
T 1wa5_C          584 SEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQ  663 (960)
T ss_dssp             HTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence            66532  3455666555543    22 356778889999999998755432   33567888888776655556667777


Q ss_pred             HHHHHHhhhC-hhhHHHhhHHHHH--hhCCCCCchHHHHHHHHHHHHhHhhhhhhH-HhhHHHHHhhhcCCCCccHHHHH
Q psy14014        529 CINVLAEACG-PTVTANFLLPTVL--NMAGDNVANVRFNVAKTLQKIGPILETNVI-QSQVKPALDKLNGDTDVDVKYFA  604 (615)
Q Consensus       529 ~l~~l~~~~~-~~~~~~~i~~~l~--~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~l~~d~d~~v~~~a  604 (615)
                      .++.+.+... .......++|.+.  ...... . .-..++.+|..++...+.... .+.+..++.++..++..  ...|
T Consensus       664 i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a  739 (960)
T 1wa5_C          664 IIAFVVEQSATIPESIKPLAQPLLAPNVWELK-G-NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHG  739 (960)
T ss_dssp             HHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCT-T-THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHcCHHHhcCC-C-CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchH
Confidence            7777776541 1112345677666  554433 2 334566667666554332211 13455556666555543  3777


Q ss_pred             HHHHHHHhh
Q psy14014        605 QEAISSIAD  613 (615)
Q Consensus       605 ~~a~~~~~~  613 (615)
                      ...++.++.
T Consensus       740 ~~ll~~i~~  748 (960)
T 1wa5_C          740 FDLLEHIML  748 (960)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777664

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.73  E-value=6e-16  Score=148.09  Aligned_cols=252  Identities=18%  Similarity=0.142  Sum_probs=188.6

Q ss_pred             hHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (615)
Q Consensus        92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~  171 (615)
                      ++.|...+.|+++.+|..|+.+|..+..        +..+|.+..+..+++..+|..++..++.+...  +.....+++.
T Consensus        25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~~~~l~~~   94 (280)
T 1oyz_A           25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFNI   94 (280)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cccchHHHHH
Confidence            4555666677778888888887776641        23456666666777777787777777665421  2223445566


Q ss_pred             HH-HHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014        172 FR-NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL  250 (615)
Q Consensus       172 l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  250 (615)
                      +. .+.+|+++.||..++.+|+.+....+.  .....+|.+...++|+++.||..|+.+++.+..        +..+|.+
T Consensus        95 L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L  164 (280)
T 1oyz_A           95 LNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLL  164 (280)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHH
Confidence            65 356899999999999999998754321  234678899999999999999999999987643        3477888


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014        251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP  330 (615)
Q Consensus       251 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p  330 (615)
                      ..+++|+++.||..++.+++.+..      .....++.+..+++|+++.||..|+.+|+.+..            +..+|
T Consensus       165 ~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~  226 (280)
T 1oyz_A          165 INLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLS  226 (280)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHH
Confidence            889999999999999999988631      125788999999999999999999999998752            34678


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC-CChhHHHHHHHhhh
Q psy14014        331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLD  391 (615)
Q Consensus       331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d-~~~~vr~~a~~~l~  391 (615)
                      .+...++|++  ||..++.+++.+..        +..+|.+.+++++ .+++++..++..+.
T Consensus       227 ~L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          227 VLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            8888888755  89999999988753        2578889998875 45677777776654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.72  E-value=5.4e-16  Score=148.37  Aligned_cols=253  Identities=15%  Similarity=0.114  Sum_probs=189.5

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhch
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~   92 (615)
                      .+..++..++++|+.+|..|+..|+.+.    .    +..++.+..+++|+++ +|..++.+|+.+..   .......++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG----G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC----C----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence            4778888899999999999999998774    2    2456666777777764 89999999988763   123345566


Q ss_pred             HHHh-hhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014         93 PPLE-SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (615)
Q Consensus        93 ~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~  171 (615)
                      +.+. .+..|+++.||..++.+|..+....+.                                        ....+.+.
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----------------------------------------~~~~~~~~  132 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNPI----------------------------------------YSPKIVEQ  132 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----------------------------------------GHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----------------------------------------ccHHHHHH
Confidence            6665 356788889999999998887654321                                        01233455


Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR  251 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  251 (615)
                      +..++.|+++.||..++.+++.+..        ...+|.+..+++|+++.||..|+.+++.+...      .+..+|.+.
T Consensus       133 L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~  198 (280)
T 1oyz_A          133 SQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFV  198 (280)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHH
Confidence            6777899999999999999987643        34788888899999999999999999876321      234778888


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014        252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY  331 (615)
Q Consensus       252 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~  331 (615)
                      ..++|+++.||..++.+|+.+.        ....+|.+...++|++  ||..|+.+|+.+..            +..+|.
T Consensus       199 ~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~  256 (280)
T 1oyz_A          199 EMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPV  256 (280)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHH
Confidence            8999999999999999998875        2467888888888865  89999999988754            346788


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHh
Q psy14014        332 VKDLVAD-PNQHVKSALASVIMG  353 (615)
Q Consensus       332 l~~~~~d-~~~~vR~~~~~~l~~  353 (615)
                      |.+++++ ++..++..+...+..
T Consensus       257 L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          257 LDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCcHHHHHHHHHhhc
Confidence            8887764 566777776666543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.70  E-value=2.8e-14  Score=161.06  Aligned_cols=503  Identities=11%  Similarity=0.028  Sum_probs=295.3

Q ss_pred             chhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHH
Q psy14014         53 LIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP  132 (615)
Q Consensus        53 ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  132 (615)
                      +...+..+.+.+++.|+.|-+.|..+-+   .++.|..+..++.   .+.+..||..|+.+|.+.....-          
T Consensus         9 l~~~l~~~~~~d~~~r~~A~~~L~~~~~---~p~~w~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w----------   72 (971)
T 2x1g_F            9 LEEAVVSFYRSNSQNQAITHEWLTDAEA---SPQAWQFSWQLMQ---LGKSQEVQFFGAITLHSKLMKHW----------   72 (971)
T ss_dssp             --CTHHHHHTSTTTC----CHHHHHTTT---STHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHHHHCG----------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHccH----------
Confidence            4444444444344577777777776554   3556666555543   35678899999998888664310          


Q ss_pred             HHHHhhcCCCcchhhhHHhhhhhhccCCCh----hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhH
Q psy14014        133 LVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII  208 (615)
Q Consensus       133 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll  208 (615)
                                               ..+++    .+++.+++.+.....+ ...||...+.++..+++...+  .|+.++
T Consensus        73 -------------------------~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l  124 (971)
T 2x1g_F           73 -------------------------HEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAI  124 (971)
T ss_dssp             -------------------------GGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C-----
T ss_pred             -------------------------hhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHH
Confidence                                     11222    2344555555554433 489999999999999988655  588888


Q ss_pred             HHHHHhhccC------chhHHHHHHHHHHHHHhhcC-h----------h---hHHHhHHHHHHHhcCC---C-----ChH
Q psy14014        209 PMFVNLAQDE------QDSVRLLAVEACVSIASLLS-Q----------S---DVEQLVMPTLRQCSGD---T-----SWR  260 (615)
Q Consensus       209 ~~l~~~~~d~------~~~vr~~a~~~l~~l~~~~~-~----------~---~~~~~l~~~l~~~~~d---~-----~~~  260 (615)
                      +-+.+.++.+      +...+..++..|..+++.+. .          +   ...+.+++.+.+++++   +     .|.
T Consensus       125 ~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~  204 (971)
T 2x1g_F          125 EEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYS  204 (971)
T ss_dssp             -HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence            8888888764      56788899999988875321 0          0   1123455555554432   2     248


Q ss_pred             HHHHHHHHHHHHHHH--hCccchhhhHHHHHHHhh----------------cCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        261 VRYMVADKFTDLQKA--VGPEITKTDLVQAFQMLL----------------KDSEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       261 vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l----------------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      ++..+.+++..+...  .+.. ....+++.+.. +                .+.++++|..|+.++..+...-..... .
T Consensus       205 ~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~  281 (971)
T 2x1g_F          205 NMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY-P  281 (971)
T ss_dssp             HHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC-H
T ss_pred             HHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc-H
Confidence            999999999987773  4443 34567776665 4                125689999999999998874221111 1


Q ss_pred             HHHHhhHHHHHH-------hhCCCC---HHHHHHHHHHHHhhchh----hc---------chhhhhhhHHHHHHhhcC--
Q psy14014        323 IIMTYILPYVKD-------LVADPN---QHVKSALASVIMGLSPI----LG---------KHNTVDHLLPLFLSQLKD--  377 (615)
Q Consensus       323 ~~~~~l~p~l~~-------~~~d~~---~~vR~~~~~~l~~l~~~----~g---------~~~~~~~l~p~l~~~l~d--  377 (615)
                      .....++|.+..       ...+.+   ......+++.+..+++.    +.         .......+++.+.++...  
T Consensus       282 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~  361 (971)
T 2x1g_F          282 KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPG  361 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCC
Confidence            233444444432       224444   26666677777766632    11         011233455666665533  


Q ss_pred             ---CChhHHHHHHHhhhHhhhhh-c-------hhHHHHHH-HHHhhhhhhhhccccc----hhhhhhhhHHHHHhhhcCC
Q psy14014        378 ---ECPEVRLNIISNLDCVNEVI-G-------IQQWRVRL-AIIEYMPLLAGQLGVE----FFDEKLNALSIVELAEDSK  441 (615)
Q Consensus       378 ---~~~~vr~~a~~~l~~l~~~~-~-------~~~~~~~~-~i~~~l~~l~~~~~~~----~~~~~l~~~~i~~~~~~~~  441 (615)
                         .+++|...++..+..+.+.. .       ...+.... .+.+.++.+..++..+    ++...   +.  +  ++..
T Consensus       362 ~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d---~~--e--~~~f  434 (971)
T 2x1g_F          362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS---SD--D--LECF  434 (971)
T ss_dssp             CTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC---HH--H--HHHH
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC---Hh--H--HHHH
Confidence               46889999999988876622 1       01111100 1111222222222100    00000   00  0  0011


Q ss_pred             chHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhh
Q psy14014        442 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVD-----HVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAM  514 (615)
Q Consensus       442 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~  514 (615)
                      ...|..+.+.+..++..+|. ...+.+++.+...+..     .+|..|++++.+++.+++.+..+.  ....+++.+..+
T Consensus       435 ~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l  513 (971)
T 2x1g_F          435 RCYRQDISDTFMYCYDVLND-YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEI  513 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhc
Confidence            24788888999888887773 3445566666655543     689999999999999988765422  223344533333


Q ss_pred             h-cCCCchHHHHHHHHHHHHHhhhChh-hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014        515 S-RDQNYLHRMTCLFCINVLAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  592 (615)
Q Consensus       515 ~-~d~~~~~R~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  592 (615)
                      . .|+++.+|..+++++|.+++.+... .+.+.++|.+...+ |  +.|+..|+.++..+++.++.. +.+.+.+++..+
T Consensus       514 ~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l  589 (971)
T 2x1g_F          514 PYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNAC  589 (971)
T ss_dssp             CTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHH
Confidence            3 2568999999999999999887642 34566778777777 4  889999999999999776532 344555555443


Q ss_pred             ---cCC--CCccHHHHHHHHHHHHhhc
Q psy14014        593 ---NGD--TDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       593 ---~~d--~d~~v~~~a~~a~~~~~~~  614 (615)
                         ...  -+.+++..+.+|++.++..
T Consensus       590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          590 HASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence               332  4678999999999988764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.69  E-value=7.7e-13  Score=149.31  Aligned_cols=521  Identities=9%  Similarity=0.016  Sum_probs=306.9

Q ss_pred             ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc------H-HHHHHHHHHhccccCCC----CC---------
Q psy14014         25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE------D-EVLLALAEQLGTFTPNV----GG---------   84 (615)
Q Consensus        25 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~------~-~vr~~a~~~l~~l~~~~----~~---------   84 (615)
                      +...+|......+..++....+  .|+++++.+.+.++.+      + ..+..+...|..+.+.+    ..         
T Consensus        97 ~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~  174 (971)
T 2x1g_F           97 GPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAE  174 (971)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHH
Confidence            3578999999999999998776  6888999988876542      3 35555555555444210    00         


Q ss_pred             -cchhhhchHHHhhhhcCc-h-------hHHHHHHHHHHHHHHh--hcChhHHhhhHHHHHHHh----h-----------
Q psy14014         85 -PEYVHCLLPPLESLATVE-E-------TVVRDKAVESLRLISA--QHSPHDLEAHFVPLVQRL----A-----------  138 (615)
Q Consensus        85 -~~~~~~l~~~l~~l~~~~-~-------~~vr~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~l----~-----------  138 (615)
                       ....+.+++.+.+++.+. +       ..++..+++++.....  +++.. ....+++.+..+    .           
T Consensus       175 l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~  253 (971)
T 2x1g_F          175 IAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCM  253 (971)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhcccccccccccc
Confidence             012345555565554322 1       2789999999998887  56655 556677766552    0           


Q ss_pred             cCCCcchhhhHHhhhhhhccCCCh----hhHHHHHHHHHH-------HhCCCC---hHHHHHHHHhHHHHHHHhch----
Q psy14014        139 SGDWFTSRTSACGLFSVCYPRVTA----GVKAELRSHFRN-------LCQDDT---PMVRRAAAGKLGELAKVVEV----  200 (615)
Q Consensus       139 ~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~-------l~~d~~---~~vR~~a~~~l~~l~~~~~~----  200 (615)
                      .++....|..|+.++..+...-..    .....+++.+..       ...+.+   ....+..++.+..+++....    
T Consensus       254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~  333 (971)
T 2x1g_F          254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS  333 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            012356788888888877764321    222333333322       224445   37788888888888754221    


Q ss_pred             ---------hhhHhhhHHHHHHhhcc-----CchhHHHHHHHHHHHHHhhc-C------hh-------hHHHhHHHHHHH
Q psy14014        201 ---------DYLKTDIIPMFVNLAQD-----EQDSVRLLAVEACVSIASLL-S------QS-------DVEQLVMPTLRQ  252 (615)
Q Consensus       201 ---------~~~~~~ll~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~-~------~~-------~~~~~l~~~l~~  252 (615)
                               ......+++.+......     .++.|+..++..|..+++.. .      ..       .+...+++.+..
T Consensus       334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~  413 (971)
T 2x1g_F          334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR  413 (971)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence                     11223455555555433     47889999999999887732 1      01       122234444443


Q ss_pred             hc---CCC-----C-------hHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC-----CcHHHHHHHHHHHHHHH
Q psy14014        253 CS---GDT-----S-------WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD-----SEAEVRAAAANKVRDFC  312 (615)
Q Consensus       253 ~~---~d~-----~-------~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~  312 (615)
                      .+   +|.     +       ...|+++..++..++..+++. ..+.+++.+...+..     .++..|++++.+++.++
T Consensus       414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia  492 (971)
T 2x1g_F          414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA  492 (971)
T ss_dssp             HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred             HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            33   121     1       147788888888888776632 334555555555543     67889999999999998


Q ss_pred             hhccccchhHHHHHhhHHHHHHhh-CCCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014        313 QNLDAYNQENIIMTYILPYVKDLV-ADPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNL  390 (615)
Q Consensus       313 ~~~~~~~~~~~~~~~l~p~l~~~~-~d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l  390 (615)
                      +.+.....  ..++.+++.+..+. +|+++.||..++++++.+++.++. ..+.+.++|.+...+ +  +.|+..|+.++
T Consensus       493 e~~~~~~~--~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al  567 (971)
T 2x1g_F          493 EHFGGEEK--RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGL  567 (971)
T ss_dssp             TC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHH
T ss_pred             hhcChhhh--HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHH
Confidence            87664332  34556666554444 267999999999999999988774 345667788888888 4  78999999999


Q ss_pred             hHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc--CCchHHHHHHHHhHHHHhhhChHh---HH
Q psy14014        391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED--SKWRVRLAIIEYMPLLAGQLGVEF---FD  465 (615)
Q Consensus       391 ~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~---~~  465 (615)
                      ..+.+..+.. +.      .+++.+            +  ..+.+.+..  .....+..+.++++.++...+.+.   +.
T Consensus       568 ~~l~~~~~~~-l~------p~~~~l------------l--~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~  626 (971)
T 2x1g_F          568 KELCRDCQLQ-LK------PYADPL------------L--NACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL  626 (971)
T ss_dssp             HHHHHHCHHH-HH------HHHHHH------------H--HHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHHHHHHh-cc------ccHHHH------------H--HHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9888654421 11      122211            1  234444544  345788899999999988765322   22


Q ss_pred             HHHHHHHHH----hcCCc--chHHHHHHHH---HHHHHHHHhChH---------------HhhhchhHHHHhhhcC--CC
Q psy14014        466 EKLNALCMT----WLVDH--VYAIREAATL---NLKKLVEQFGSE---------------WAQSTVIPKVVAMSRD--QN  519 (615)
Q Consensus       466 ~~l~~~l~~----~l~d~--~~~vR~~a~~---~l~~l~~~~~~~---------------~~~~~i~~~l~~~~~d--~~  519 (615)
                      ..+++.++.    .+...  +...+.....   +++.+...++..               ...+.++|.+...+.+  .+
T Consensus       627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~  706 (971)
T 2x1g_F          627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEE  706 (971)
T ss_dssp             HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence            233333333    22222  2223444444   444444444421               1224577777766543  35


Q ss_pred             chHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh
Q psy14014        520 YLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET  578 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~  578 (615)
                      ..+...++.+++.++..++.+.  +.+.+++.+....+....   .++...++.++..++.
T Consensus       707 ~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~  764 (971)
T 2x1g_F          707 IDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFK  764 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCC
Confidence            6788899999999988776543  345566666655543222   3577777777766654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.68  E-value=1.9e-13  Score=144.42  Aligned_cols=507  Identities=9%  Similarity=0.027  Sum_probs=323.0

Q ss_pred             HHHHHHHhcC---ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhh
Q psy14014         15 IAVLIDELKN---EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHC   90 (615)
Q Consensus        15 i~~ll~~l~s---~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~   90 (615)
                      ++.+-..+++   .|...|..++..+-.+ ...|.+ . ..+.+-+.+++.+++ +.|+.+--.+..+++.  .++...-
T Consensus        37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d-~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L  111 (621)
T 2vgl_A           37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHD-I-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRL  111 (621)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCC-C-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCC-C-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHH
Confidence            4555566664   4777787887777665 335665 2 234445555666666 6898888888887763  2344444


Q ss_pred             chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhh--cCCCcchhhhHHhhhhhhccCCChhhHH--
Q psy14014         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA--SGDWFTSRTSACGLFSVCYPRVTAGVKA--  166 (615)
Q Consensus        91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~--~~~~~~~r~~a~~~l~~~~~~~~~~~~~--  166 (615)
                      .++.+.+-+.++++.+|-.|+.+++.+..   + .+.+.+.|.+.++.  .|.+..+|+.|+..+..++...+ +..+  
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~  186 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMG  186 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCch
Confidence            56677777889999999999999998854   3 35567888888887  78889999999988888776433 3333  


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccC-------------chhHHHHHHHHHH
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDE-------------QDSVRLLAVEACV  231 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~-------------~~~vr~~a~~~l~  231 (615)
                      .+++.+..++.|+++.|+.+++.++..++..-+..  ...+.++..+.+++.+.             +++.+...++.+.
T Consensus       187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~  266 (621)
T 2vgl_A          187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ  266 (621)
T ss_dssp             SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG
T ss_pred             hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH
Confidence            67788888999999999999999999998754431  11223334444443321             5677777777766


Q ss_pred             HHHhhcChhhHHHhHHHHHHHhc----CCC----------ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc
Q psy14014        232 SIASLLSQSDVEQLVMPTLRQCS----GDT----------SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE  297 (615)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~l~~~~----~d~----------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  297 (615)
                      .++..-. ......+.+.+..++    +-+          +..|-..++.++..+.   ............+..++.+.+
T Consensus       267 ~~~~~~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~  342 (621)
T 2vgl_A          267 CYPPPED-PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRE  342 (621)
T ss_dssp             GSSSCSS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSC
T ss_pred             HhCCCCC-HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCC
Confidence            5543211 122333333333322    112          1244455555544432   221223456777888899999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc
Q psy14014        298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK  376 (615)
Q Consensus       298 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~  376 (615)
                      +++|..|+.++..++...+..    .......+.+...+. |++..+|..+++.+..++.    +...+.++..+.+.+.
T Consensus       343 ~niry~aL~~l~~l~~~~~~~----~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~~Nv~~Iv~eL~~yl~  414 (621)
T 2vgl_A          343 TNLRYLALESMCTLASSEFSH----EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD----RSNAQQIVAEMLSYLE  414 (621)
T ss_dssp             HHHHHHHHHHHHHHTTCTTTH----HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccCcH----HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----hhhHHHHHHHHHHHHH
Confidence            999999999999998754311    234455666667777 9999999999999888764    2335567777888888


Q ss_pred             CCChhHHHHHHHhhhHhhhhhch-hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHH
Q psy14014        377 DECPEVRLNIISNLDCVNEVIGI-QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLL  455 (615)
Q Consensus       377 d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l  455 (615)
                      +.+.+.|..++.+++.+...+.. ..|-        +                  ..+.+++++....+...++..+..+
T Consensus       415 ~~d~~~~~~~v~~I~~la~k~~~~~~~~--------v------------------~~Ll~ll~~~~~~v~~ev~~~l~~i  468 (621)
T 2vgl_A          415 TADYSIREEIVLKVAILAEKYAVDYTWY--------V------------------DTILNLIRIAGDYVSEEVWYRVIQI  468 (621)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHCSSTHHH--------H------------------HHHHHHHHHHGGGSCSHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHhcCCcHHHH--------H------------------HHHHHHHHhhcccchHHHHHHHHHH
Confidence            88899999999998888765432 2332        1                  1222222221112333333343333


Q ss_pred             HhhhChHhHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHhChHH-h-hhchhHHHHhhhcCCCchHHHHHHHHHH
Q psy14014        456 AGQLGVEFFDEKLNALCMTWLVDHV--YAIREAATLNLKKLVEQFGSEW-A-QSTVIPKVVAMSRDQNYLHRMTCLFCIN  531 (615)
Q Consensus       456 ~~~~~~~~~~~~l~~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~~-~-~~~i~~~l~~~~~d~~~~~R~~a~~~l~  531 (615)
                      ......  .....+..+.+.+.++.  ..+-..+++.+|..+..+.... . ...++..+.+.+.+.++.+|..++.++.
T Consensus       469 i~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~  546 (621)
T 2vgl_A          469 VINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYI  546 (621)
T ss_dssp             HGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            332211  22334444556666653  2455567788888876543210 0 1134556666667889999999999999


Q ss_pred             HHHhhhChhhHHHhhHHHHHhhCC--CCCchHHHHHHHHHHHHh
Q psy14014        532 VLAEACGPTVTANFLLPTVLNMAG--DNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       532 ~l~~~~~~~~~~~~i~~~l~~~~~--D~~~~vr~~a~~~l~~l~  573 (615)
                      .+....+.  ..+.+...+..+..  |.+++||..|..-+.-+.
T Consensus       547 Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          547 KFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             HHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            98765432  23445555555566  999999999988776653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.68  E-value=3.4e-12  Score=144.13  Aligned_cols=365  Identities=10%  Similarity=0.069  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcC
Q psy14014        222 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS----GDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKD  295 (615)
Q Consensus       222 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~----~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d  295 (615)
                      .|..+..++..++...+.+ ..+.+.+.+.+.+    .+++|+.|.+++.+++.++.......  ....+++.+..+ .+
T Consensus       423 ~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~  500 (963)
T 2x19_B          423 YRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SI  500 (963)
T ss_dssp             HHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CC
T ss_pred             HHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CC
Confidence            4677777888887777643 4556666666666    67899999999999999998765432  223455544333 44


Q ss_pred             CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHHHH
Q psy14014        296 SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLS  373 (615)
Q Consensus       296 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l~~  373 (615)
                      +++.||..++..++.+...+...   ..+++.+++.+...+++  +.|+..++.++..+++..+..  .+.+.++..+.+
T Consensus       501 ~~~~vr~~~~~~l~~~~~~l~~~---~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~  575 (963)
T 2x19_B          501 SNVQLADTVMFTIGALSEWLADH---PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD  575 (963)
T ss_dssp             CSHHHHHHHHHHHHHTHHHHHHC---HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            57889999999999999876532   24678888888888866  899999999999998765532  234555666666


Q ss_pred             hhcC--CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHH---H
Q psy14014        374 QLKD--ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRL---A  447 (615)
Q Consensus       374 ~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~---~  447 (615)
                      .+..  -+...+..++++++.++...+.+...+..  ..+++.+.              ..+....+. .+...+.   .
T Consensus       576 ~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~--~~l~~~l~--------------~~l~~~~~~~~~~~~~~~~~~  639 (963)
T 2x19_B          576 VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL--HSLISPYI--------------QQLEKLAEEIPNPSNKLAIVH  639 (963)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH--HHHHHHHH--------------HHHHHHHSSCSCHHHHHHHHH
T ss_pred             HhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHH--------------HHHHHHHhCCCCHHHHHHHHH
Confidence            6654  35678999999999888766522222111  11111110              111111211 1333333   4


Q ss_pred             HHHHhHHHHhhhCh------------------------HhHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHhChH
Q psy14014        448 IIEYMPLLAGQLGV------------------------EFFDEKLNALCMTWLV--DHVYAIREAATLNLKKLVEQFGSE  501 (615)
Q Consensus       448 ~~~~l~~l~~~~~~------------------------~~~~~~l~~~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~  501 (615)
                      .++.++.+++.++.                        ..+.+.++|.+...+.  ..+..+++.+..+++.++..+|..
T Consensus       640 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~  719 (963)
T 2x19_B          640 ILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD  719 (963)
T ss_dssp             HHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred             HHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence            55666666666542                        1134566776665543  234589999999999999888865


Q ss_pred             Hh--hhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhChh-----hHH---HhhHHHHHhhC-C--CCCchHHHHHHH
Q psy14014        502 WA--QSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPT-----VTA---NFLLPTVLNMA-G--DNVANVRFNVAK  567 (615)
Q Consensus       502 ~~--~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~~-----~~~---~~i~~~l~~~~-~--D~~~~vr~~a~~  567 (615)
                      +.  .+.+++.+...+.. +.    ...+..++.+...++.+     .+.   +.++..+...+ +  +..+++|.....
T Consensus       720 ~~~~l~~~~~~l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~  795 (963)
T 2x19_B          720 FAPMVPQLCEMLGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQ  795 (963)
T ss_dssp             TGGGHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHH
Confidence            32  22333333333322 11    13455566665522221     111   12222222222 2  246899999999


Q ss_pred             HHHHHhHhhhhhhH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        568 TLQKIGPILETNVI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       568 ~l~~l~~~~~~~~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+..+...++...+     .+.+.+.+...++.+|.++...+...+..+..
T Consensus       796 ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~  846 (963)
T 2x19_B          796 LLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLP  846 (963)
T ss_dssp             HHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            99999977654322     23333333334578899999999988887653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.66  E-value=1.5e-12  Score=147.13  Aligned_cols=491  Identities=15%  Similarity=0.108  Sum_probs=291.5

Q ss_pred             HHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcch
Q psy14014         66 EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTS  145 (615)
Q Consensus        66 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~  145 (615)
                      +.|+.|-+.|..+-+   .++.|..+..++.   .+.+..||..|+..|.+.....-                       
T Consensus        40 ~~r~~A~~~L~~~~~---~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w-----------------------   90 (963)
T 2x19_B           40 ENKNLAQKWLMQAQV---SPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYW-----------------------   90 (963)
T ss_dssp             HHHHHHHHHHHHHHH---STTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCG-----------------------
T ss_pred             HHHHHHHHHHHHHhc---CHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCH-----------------------
Confidence            456666666655433   2344444444332   24566788888777776554210                       


Q ss_pred             hhhHHhhhhhhccCCChh----hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc----
Q psy14014        146 RTSACGLFSVCYPRVTAG----VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD----  217 (615)
Q Consensus       146 r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d----  217 (615)
                                  ..++++    +++.+++.+.... ...+.||...+.++..+++...++. |+.+++-+.+.++.    
T Consensus        91 ------------~~l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~  156 (963)
T 2x19_B           91 ------------SDIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSP  156 (963)
T ss_dssp             ------------GGSCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC----
T ss_pred             ------------HhCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccC
Confidence                        112222    2334444444432 2358899999999999998765543 78899988888865    


Q ss_pred             -CchhHHHHHHHHHHHHHhhcC-h--------------hhHHHhHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhCcc
Q psy14014        218 -EQDSVRLLAVEACVSIASLLS-Q--------------SDVEQLVMPTLRQCSGDTSW--RVRYMVADKFTDLQKAVGPE  279 (615)
Q Consensus       218 -~~~~vr~~a~~~l~~l~~~~~-~--------------~~~~~~l~~~l~~~~~d~~~--~vR~~~~~~l~~l~~~~~~~  279 (615)
                       ++...+..++..|..+++.+. .              ....+.+++.+.+++.+.+.  .++..+.+++..... .+..
T Consensus       157 ~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~  235 (963)
T 2x19_B          157 VDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVP  235 (963)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCC
T ss_pred             CCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCC
Confidence             255678888999988886331 1              12245577777777765432  478888888876655 3332


Q ss_pred             c-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHH-------hhCCCCHHHHHHHHHHH
Q psy14014        280 I-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKD-------LVADPNQHVKSALASVI  351 (615)
Q Consensus       280 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~-------~~~d~~~~vR~~~~~~l  351 (615)
                      . ....+++.+.+.+.  ++++|..|+.++..++..-.+.... .....++|.+..       ...+.+......+++.+
T Consensus       236 ~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~  312 (963)
T 2x19_B          236 LQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA  312 (963)
T ss_dssp             GGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2 12567888877774  5678999999999988743221111 223333333222       22334555566666777


Q ss_pred             Hhhchhhcc--------hhhhhhhHHHHHHhhcC-----CChhHHHHHHHhhhHhhhhhc-------hhHHHHHH-HHHh
Q psy14014        352 MGLSPILGK--------HNTVDHLLPLFLSQLKD-----ECPEVRLNIISNLDCVNEVIG-------IQQWRVRL-AIIE  410 (615)
Q Consensus       352 ~~l~~~~g~--------~~~~~~l~p~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~-~i~~  410 (615)
                      ..+++....        ......+++.+.++..+     .++.+...++..+..+.+...       ...+.... .+.+
T Consensus       313 ~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~  392 (963)
T 2x19_B          313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQ  392 (963)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            666543211        11223455566665554     356777777777777665221       11111000 1111


Q ss_pred             hhhhhhhccccchhhhhhhhHHHHHhhhc--CCc-hHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhc----CCcchHH
Q psy14014        411 YMPLLAGQLGVEFFDEKLNALSIVELAED--SKW-RVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL----VDHVYAI  483 (615)
Q Consensus       411 ~l~~l~~~~~~~~~~~~l~~~~i~~~~~~--~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~v  483 (615)
                      .++.+...+..   ++.   ..+..+..|  ..| ..|..+.+.+..++...|.+ ..+.+++.+...+    .+.+|..
T Consensus       393 l~~~ll~~~~~---p~~---~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~  465 (963)
T 2x19_B          393 LVDVLLHKAQF---PSD---EEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQH  465 (963)
T ss_dssp             HHHHHHHHHSC---CCH---HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHH
T ss_pred             HHHHHHHHHcC---CCc---ccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHH
Confidence            12222222210   000   000000001  112 35778888888888877754 3455666666666    6778999


Q ss_pred             HHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhHHHhhHHHHHhhCCCCCch
Q psy14014        484 REAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVTANFLLPTVLNMAGDNVAN  560 (615)
Q Consensus       484 R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~D~~~~  560 (615)
                      |++++.+++.++..+..+.  ....+++.+.++ .++++.+|..+++++|.+.+.+.. ..+...+++.+...+.|  +.
T Consensus       466 ~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~  542 (963)
T 2x19_B          466 TEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PE  542 (963)
T ss_dssp             HHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GG
T ss_pred             HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--ch
Confidence            9999999999998765421  222344433333 446888999999999999987543 24566788888888866  89


Q ss_pred             HHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---cC--CCCccHHHHHHHHHHHHhhc
Q psy14014        561 VRFNVAKTLQKIGPILETNVIQSQVKPALDKL---NG--DTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       561 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~--d~d~~v~~~a~~a~~~~~~~  614 (615)
                      |+..|+.++..++..++.. +.+.+.+++..|   ..  +-+.+++..+.+|++.++..
T Consensus       543 V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          543 LSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             GHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence            9999999999999766532 334445554443   22  34678999999999988753

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.64  E-value=2.2e-12  Score=146.27  Aligned_cols=514  Identities=9%  Similarity=0.028  Sum_probs=297.7

Q ss_pred             cchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHH
Q psy14014         52 ELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV  131 (615)
Q Consensus        52 ~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  131 (615)
                      ++...+..+.+.+++.|+.|-+.|..+-+   .++++..+..++..   +.+..+|..|+..|.+.....          
T Consensus        17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~---~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~----------   80 (1049)
T 3m1i_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD---NPDAWQKADQILQF---STNPQSKFIALSILDKLITRK----------   80 (1049)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH---STTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHT----------
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHh---CchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhh----------
Confidence            34444444444444577777777766543   23455555555432   456788888888877765421          


Q ss_pred             HHHHHhhcCCCcchhhhHHhhhhhhccCCChhhH----HHHHHHHHHHhCCC-----ChHHHHHHHHhHHHHHHHhchhh
Q psy14014        132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK----AELRSHFRNLCQDD-----TPMVRRAAAGKLGELAKVVEVDY  202 (615)
Q Consensus       132 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~----~~l~~~l~~l~~d~-----~~~vR~~a~~~l~~l~~~~~~~~  202 (615)
                                               +..++++.+    +.+++.+.....++     ++.+|...+.+++.+++.-.+ .
T Consensus        81 -------------------------W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~  134 (1049)
T 3m1i_C           81 -------------------------WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-Q  134 (1049)
T ss_dssp             -------------------------GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-T
T ss_pred             -------------------------CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-c
Confidence                                     011222222    23333333322222     468999999999999987544 3


Q ss_pred             hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---------------hhH---HHhHHHHHHHhcCC-CChHHHH
Q psy14014        203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---------------SDV---EQLVMPTLRQCSGD-TSWRVRY  263 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---------------~~~---~~~l~~~l~~~~~d-~~~~vR~  263 (615)
                      .|+.+++.+.+.++ .++..+..++.++..+.+.+..               +.+   .+.+++.+.+++.+ ++..++.
T Consensus       135 ~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~  213 (1049)
T 3m1i_C          135 NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIV  213 (1049)
T ss_dssp             TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48889998888886 4555677788888877754331               111   22345555555543 4577899


Q ss_pred             HHHHHHHHHHHHhCccc-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc-cccc--hhHH---HHHhhHHHHHH--
Q psy14014        264 MVADKFTDLQKAVGPEI-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL-DAYN--QENI---IMTYILPYVKD--  334 (615)
Q Consensus       264 ~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~--~~~~---~~~~l~p~l~~--  334 (615)
                      .+.+++..+....+... ..+.+++.+.+.+. .++++|..|+.++..++..- ++..  ....   +.+.++..+..  
T Consensus       214 ~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si  292 (1049)
T 3m1i_C          214 ATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSV  292 (1049)
T ss_dssp             HHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence            99999888766554322 12356666663222 26889999999999988652 2210  0011   11222222211  


Q ss_pred             ------------hhCCCCHHHHHHHHHHHHhhchhhc----c----hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        335 ------------LVADPNQHVKSALASVIMGLSPILG----K----HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       335 ------------~~~d~~~~vR~~~~~~l~~l~~~~g----~----~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                                  ..++.++.....+++.+..+++...    .    ......+++.+..+...++.+|...++..+..+.
T Consensus       293 ~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~  372 (1049)
T 3m1i_C          293 MPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLV  372 (1049)
T ss_dssp             CCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                        1234456666667776655543321    1    1123345677777666778899999998888776


Q ss_pred             hhh-----chhHHHHHHHHHhhhhhhhhccccc----hhh-hhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh
Q psy14014        395 EVI-----GIQQWRVRLAIIEYMPLLAGQLGVE----FFD-EKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF  463 (615)
Q Consensus       395 ~~~-----~~~~~~~~~~i~~~l~~l~~~~~~~----~~~-~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~  463 (615)
                      +..     ........  +.+.++.+...+..+    ++. +..  ..+....+| ..|..|..+.+.+..++... ...
T Consensus       373 ~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~--e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~  447 (1049)
T 3m1i_C          373 ADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEG--EIVREFVKESDTIQLYKSEREVLVYLTHLN-VID  447 (1049)
T ss_dssp             HHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTS--CEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHH
T ss_pred             HHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCC--cchHhhhccchHHHHHHHHHHHHHHHHccC-HHH
Confidence            622     01111111  111122222222110    000 000  000000001 12456777788888887443 434


Q ss_pred             HHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhc-----CCCchHHHHHHHHHHHH
Q psy14014        464 FDEKLNALCMTWLV--DHVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSR-----DQNYLHRMTCLFCINVL  533 (615)
Q Consensus       464 ~~~~l~~~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~-----d~~~~~R~~a~~~l~~l  533 (615)
                      ..+.+.+.+.+.+.  ..+|..|++++.+++.++..++..   .+...+++.+..+..     ++.+.+|..+++++|..
T Consensus       448 ~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry  527 (1049)
T 3m1i_C          448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY  527 (1049)
T ss_dssp             HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence            45556666666664  468999999999999998766543   123445565555432     35667777799999998


Q ss_pred             HhhhCh-hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhH-------HhhHHHHHhhh---cCCCCccHHH
Q psy14014        534 AEACGP-TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI-------QSQVKPALDKL---NGDTDVDVKY  602 (615)
Q Consensus       534 ~~~~~~-~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~l---~~d~d~~v~~  602 (615)
                      .+.+.. ..+...+++.+...+.|+++.|+..|+.++.++++.++....       .+.+.+++..+   ..+-+.+-..
T Consensus       528 ~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~  607 (1049)
T 3m1i_C          528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH  607 (1049)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence            876433 235566788888888999999999999999999987653321       14455555443   4555666667


Q ss_pred             HHHHHHHHHhhc
Q psy14014        603 FAQEAISSIADS  614 (615)
Q Consensus       603 ~a~~a~~~~~~~  614 (615)
                      ...+|++.+.+.
T Consensus       608 ~~~eai~~ii~~  619 (1049)
T 3m1i_C          608 TFYKACGIIISE  619 (1049)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            777888877653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.64  E-value=1.7e-14  Score=130.35  Aligned_cols=184  Identities=21%  Similarity=0.187  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014        166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL  245 (615)
Q Consensus       166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  245 (615)
                      ....+.+++++.|+++.+|..++..|+.+..        ...++.+.++++|+++.+|..|+.+++.+..        +.
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            4455677888899999999999999998642        3567888888999999999999999987642        34


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      .+|.+.+.+.|+++.||..++.+++.+..        ...++.+..+++|+++.||..|+.+|+.+..            
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------  136 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------------  136 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------
Confidence            67888889999999999999999988642        4578889999999999999999999998753            


Q ss_pred             HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014        326 TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV  393 (615)
Q Consensus       326 ~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l  393 (615)
                      +..+|.+..+++|+++.||..++.+|+.+..        +..++.+.++++|+++.||..|..+|..+
T Consensus       137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            3467888999999999999999999998742        34678888899999999999999988765

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.64  E-value=1.3e-14  Score=132.20  Aligned_cols=183  Identities=20%  Similarity=0.187  Sum_probs=153.6

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHH
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP  248 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  248 (615)
                      ++.+..++.|+++.+|..++..|+.+..        ...+|.+.++++|+++.||..|+.+++.+..        +..+|
T Consensus        21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~   84 (211)
T 3ltm_A           21 VEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVE   84 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHH
Confidence            4556777899999999999999988642        3578888899999999999999999988742        34678


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhh
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYI  328 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  328 (615)
                      .+.+.++|+++.||..++.+++.+..        ...++.+..+++|+++.||..|+.+|+.+..            +..
T Consensus        85 ~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~  144 (211)
T 3ltm_A           85 PLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------------ERA  144 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------HHH
Confidence            88889999999999999999988742        4578889999999999999999999998743            346


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        329 LPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       329 ~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      +|.+..+++|+++.||..++.+|+.+..        +..++.+.++++|+++.||..|..+|..+..
T Consensus       145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          145 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            7888899999999999999999998743        3567888999999999999999999987654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=2.4e-14  Score=133.36  Aligned_cols=187  Identities=10%  Similarity=0.123  Sum_probs=158.4

Q ss_pred             HHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhh-ccCchhHHHHHHHHHHHHHhhcChh--hHHHhH
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQS--DVEQLV  246 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l  246 (615)
                      +.+.++|.+|.+|+.++..|..+++..+.  ......+++.+...+ +|.+..||..|+.+++.++..++..  .+.+.+
T Consensus        20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i   99 (242)
T 2qk2_A           20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC   99 (242)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            56677899999999999999999886432  122357889999999 4999999999999999999988763  445668


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      +|.+.+.+.|++..||.++..++..+....+    ...++|.+...+++.++.+|..++..++.++...++......+++
T Consensus       100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~  175 (242)
T 2qk2_A          100 VPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK  175 (242)
T ss_dssp             HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH
Confidence            9999999999999999999999999987543    467899999999999999999999999998877654322234678


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN  362 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~  362 (615)
                      .++|.+..+++|+++.||..+..+++.++..+|.+.
T Consensus       176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~  211 (242)
T 2qk2_A          176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA  211 (242)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence            899999999999999999999999999999998653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=1.2e-14  Score=135.38  Aligned_cols=195  Identities=15%  Similarity=0.130  Sum_probs=147.2

Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc--cchhhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP--EITKTDLVQAFQMLL-KDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                      +.+.+-+.+.+.++|.+|..|++++..+..+....+.  .....++++.+...+ +|.+..||..|+.+++.++..+++.
T Consensus        12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~   91 (242)
T 2qk2_A           12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR   91 (242)
T ss_dssp             CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            3444555577778899999999999999999886332  112357899999999 4999999999999999999988765


Q ss_pred             chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhc
Q psy14014        319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG  398 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  398 (615)
                      .  ..+...++|.+.+.+.|++..||.++..++..+....+    .+.++|.+...++++++.+|..++..++.+....+
T Consensus        92 ~--~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           92 F--SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             G--HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             H--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            4  25778899999999999999999999999999887654    35688999999999999999999998887655443


Q ss_pred             hhH-HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChH
Q psy14014        399 IQQ-WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE  462 (615)
Q Consensus       399 ~~~-~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  462 (615)
                      .+. ...      +++.+            +  |.+...++|+++.+|..+.++++.++..+|.+
T Consensus       166 ~~~~~~~------~l~~l------------~--p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          166 PTALNKK------LLKLL------------T--TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             GGGCCHH------HHHHH------------H--HHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCCccHH------HHHHH------------H--HHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence            211 000      01111            1  55666666667777777777777766666654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.58  E-value=9.8e-14  Score=126.43  Aligned_cols=189  Identities=20%  Similarity=0.190  Sum_probs=148.9

Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhh
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD  284 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  284 (615)
                      +..++.+.+.++|+++.+|..|+..++.+..        +..+|.+.+.+.|+++.+|..++.+|+.+..        ..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            4567888888899999999999999987642        3467888888999999999999999988642        46


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhh
Q psy14014        285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV  364 (615)
Q Consensus       285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~  364 (615)
                      .++.+..+++|+++.||..|+.+|+.+..            +..+|.+.++++|+++.||..++.+++.+..        
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------  141 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------  141 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence            77888999999999999999999988754            3467888888999999999999999988743        


Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchH
Q psy14014        365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV  444 (615)
Q Consensus       365 ~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~v  444 (615)
                      +..+|.+.++++|+++.||..++.+|+.+..    ..         .+                  +.+..+++|+++.+
T Consensus       142 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~---------~~------------------~~L~~~l~d~~~~v  190 (211)
T 3ltm_A          142 ERAVEPLIKALKDEDGWVRQSAADALGEIGG----ER---------VR------------------AAMEKLAETGTGFA  190 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HH---------HH------------------HHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hh---------HH------------------HHHHHHHhCCCHHH
Confidence            2467888889999999999999998887632    11         02                  45667778888999


Q ss_pred             HHHHHHHhHHHHhhhC
Q psy14014        445 RLAIIEYMPLLAGQLG  460 (615)
Q Consensus       445 r~~~~~~l~~l~~~~~  460 (615)
                      |..+.++|..+....+
T Consensus       191 r~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          191 RKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHHHHC------
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            9999999888765443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.58  E-value=1.5e-13  Score=124.06  Aligned_cols=185  Identities=21%  Similarity=0.199  Sum_probs=153.7

Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhh
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKT  283 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  283 (615)
                      .....+.++++++|+++.+|..|+..++.+..        +..++.+.+.+.|+++.+|..++..++.+..        .
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence            45678889999999999999999999987642        2467888888899999999999999988642        3


Q ss_pred             hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh
Q psy14014        284 DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT  363 (615)
Q Consensus       284 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~  363 (615)
                      ..++.+...+.|+++.||..|+.+|+.+..            +..+|.+.+.++|+++.||..++.+++.+..       
T Consensus        76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------  136 (201)
T 3ltj_A           76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------  136 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence            678889999999999999999999998654            3467888889999999999999999998753       


Q ss_pred             hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCch
Q psy14014        364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWR  443 (615)
Q Consensus       364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~  443 (615)
                       +..+|.+.++++|+++.||..|+.+|+.+.    ....         +                  +.+..+++|+++.
T Consensus       137 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~~~~---------~------------------~~L~~~l~d~~~~  184 (201)
T 3ltj_A          137 -ERAVEPLIKALKDEDGWVRQSAADALGEIG----GERV---------R------------------AAMEKLAETGTGF  184 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----SHHH---------H------------------HHHHHHHHHCCHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----chhH---------H------------------HHHHHHHhCCCHH
Confidence             346788999999999999999999998762    2111         2                  5666777889999


Q ss_pred             HHHHHHHHhHHH
Q psy14014        444 VRLAIIEYMPLL  455 (615)
Q Consensus       444 vr~~~~~~l~~l  455 (615)
                      +|..+.+++..+
T Consensus       185 vr~~A~~aL~~l  196 (201)
T 3ltj_A          185 ARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999988876

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.57  E-value=2e-11  Score=135.26  Aligned_cols=555  Identities=11%  Similarity=0.092  Sum_probs=321.3

Q ss_pred             ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCC-----CC-Cc----c------
Q psy14014         25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPN-----VG-GP----E------   86 (615)
Q Consensus        25 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~-----~~-~~----~------   86 (615)
                      +.+.+|......+..++....|+ .|+..++-+.++++.++  .......+.|..+.+.     +. +.    .      
T Consensus       102 ~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd  180 (980)
T 3ibv_A          102 EPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKD  180 (980)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHH
Confidence            45669999999999999988777 77778877776654321  2222233333311111     00 00    0      


Q ss_pred             ----h-----hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH-hhhHHHHHHHhhcCCCcchhhhHHhhhhhh
Q psy14014         87 ----Y-----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVC  156 (615)
Q Consensus        87 ----~-----~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~  156 (615)
                          .     .+..+.++.......++.++..+++++.....+.+...+ ...+++.+..+..+  ...|..|+.++..+
T Consensus       181 ~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei  258 (980)
T 3ibv_A          181 AIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEI  258 (980)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHH
Confidence                0     122233344433345678899999999999999887655 34578888777765  57899999988877


Q ss_pred             ccCC-ChhhHHHHHHH------HHHHhC-CCChHHHHHHHHhHHHHHHHhchh----------------hhHhhhHHHHH
Q psy14014        157 YPRV-TAGVKAELRSH------FRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD----------------YLKTDIIPMFV  212 (615)
Q Consensus       157 ~~~~-~~~~~~~l~~~------l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~----------------~~~~~ll~~l~  212 (615)
                      +..- .+..+..++..      +..+.. +.+.++++..++.+..++...-.-                .....++|.+.
T Consensus       259 ~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL  338 (980)
T 3ibv_A          259 VNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLI  338 (980)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHH
T ss_pred             HHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHH
Confidence            6554 33333333322      222222 577888888877776665432110                23446889999


Q ss_pred             HhhccCchhHHHHHHHHHHHHHhhcCh--------h---hHHHhHHHHHHHhcC---CCC-------------hHHHHHH
Q psy14014        213 NLAQDEQDSVRLLAVEACVSIASLLSQ--------S---DVEQLVMPTLRQCSG---DTS-------------WRVRYMV  265 (615)
Q Consensus       213 ~~~~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~l~~~l~~~~~---d~~-------------~~vR~~~  265 (615)
                      .++.+++++|-..++..|..+......        +   .+.+.+++.+.+-+.   |.+             ...|+..
T Consensus       339 ~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l  418 (980)
T 3ibv_A          339 RYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL  418 (980)
T ss_dssp             HHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHH
T ss_pred             HHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHH
Confidence            999999999999888888877754321        1   223334444433221   111             1467666


Q ss_pred             HHHHHHHHHHhCccchhh----hHHHHHHHhhc---CCcHHHHHHHHHHHHHHHhhccccchh----HHHHHhhHHHHHH
Q psy14014        266 ADKFTDLQKAVGPEITKT----DLVQAFQMLLK---DSEAEVRAAAANKVRDFCQNLDAYNQE----NIIMTYILPYVKD  334 (615)
Q Consensus       266 ~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~p~l~~  334 (615)
                      . .+-.....++.+....    .+.+.+.+.+.   +.+|..+++++.+++.+++.+......    ....+.+++.+..
T Consensus       419 ~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~  497 (980)
T 3ibv_A          419 K-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL  497 (980)
T ss_dssp             H-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred             H-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence            6 5555555566554444    45555555553   456899999999999999987642210    0123446677766


Q ss_pred             hhC-----CCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHH--hhcCCChhHHHHHHHhhhHhhhhhchhHHHHHH
Q psy14014        335 LVA-----DPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLS--QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL  406 (615)
Q Consensus       335 ~~~-----d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  406 (615)
                      +++     ++++.||..+++.+++.++.+.. ..+.+.+++.+..  .+.+++..||..|..++..+++..+.. +.   
T Consensus       498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~---  573 (980)
T 3ibv_A          498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VV---  573 (980)
T ss_dssp             HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CS---
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hh---
Confidence            654     88999999999999999998864 3345556666666  666778899999999999998765431 10   


Q ss_pred             HHHhhhhhhhhccc----cchhhhhhhh---HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--H---hHHHHHHHHHHH
Q psy14014        407 AIIEYMPLLAGQLG----VEFFDEKLNA---LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--E---FFDEKLNALCMT  474 (615)
Q Consensus       407 ~i~~~l~~l~~~~~----~~~~~~~l~~---~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~---~~~~~l~~~l~~  474 (615)
                         .+++.+...++    ...-+..-..   +...++.++....-+....++++.+....+.  +   .+.+.+++.++.
T Consensus       574 ---~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~  650 (980)
T 3ibv_A          574 ---NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIG  650 (980)
T ss_dssp             ---SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence               11111111111    0000000000   0001111122233455678888888876652  1   123444444433


Q ss_pred             h----cCCc----chH-HHHHHHHHHHHHHHHhChH------H--hhhchhHHHHhhhc--CCCchHHHHHHHHHHHHHh
Q psy14014        475 W----LVDH----VYA-IREAATLNLKKLVEQFGSE------W--AQSTVIPKVVAMSR--DQNYLHRMTCLFCINVLAE  535 (615)
Q Consensus       475 ~----l~d~----~~~-vR~~a~~~l~~l~~~~~~~------~--~~~~i~~~l~~~~~--d~~~~~R~~a~~~l~~l~~  535 (615)
                      -    +...    ... .-...+.+++.+++.+...      .  ....+.+.++..+.  ..+..+|..+..++.++..
T Consensus       651 ~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~  730 (980)
T 3ibv_A          651 KANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN  730 (980)
T ss_dssp             HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            2    2211    111 1124566778888877421      0  11234555555454  4578899999999999998


Q ss_pred             hhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhh
Q psy14014        536 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDK  591 (615)
Q Consensus       536 ~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~  591 (615)
                      .+|.+. .+.+-+.+..++.+-...--......+++++..++.+   .+.+-+.|++.+
T Consensus       731 ~lg~~~-~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~  788 (980)
T 3ibv_A          731 VVGPDM-LPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMR  788 (980)
T ss_dssp             TTHHHH-TTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHH
T ss_pred             HccHhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887763 3333333333333322333345678888888777654   234444555544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.56  E-value=4.1e-11  Score=135.78  Aligned_cols=500  Identities=10%  Similarity=0.054  Sum_probs=304.0

Q ss_pred             CCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCC-CC--Ccc
Q psy14014         10 DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPN-VG--GPE   86 (615)
Q Consensus        10 ~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~-~~--~~~   86 (615)
                      -++..+..++..+.+++...|..|-+.|...-..  ++ .+..+..++..  +.+..+|..++..|...+.. ..  .++
T Consensus        13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~-~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~   87 (1049)
T 3m1i_C           13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PD-AWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPND   87 (1049)
T ss_dssp             CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TT-GGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred             ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence            3466788888888899988999999999877432  33 55555555533  23446999999888876531 11  111


Q ss_pred             h----hhhchHHHhhhhcCc-----hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhc
Q psy14014         87 Y----VHCLLPPLESLATVE-----ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCY  157 (615)
Q Consensus        87 ~----~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~  157 (615)
                      .    ...++..+.....++     +..||...+.++..++.+.-+ .-.+.+++.+..... .....+..+..++..+.
T Consensus        88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~  165 (1049)
T 3m1i_C           88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS  165 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence            1    233444444333232     378999999999999887433 234567777766664 23334555555555444


Q ss_pred             cCC--------C--------hhh---HHHHHHHHHHHhCC-CChHHHHHHHHhHHHHHHHhchhh-hHhhhHHHHHHhhc
Q psy14014        158 PRV--------T--------AGV---KAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDY-LKTDIIPMFVNLAQ  216 (615)
Q Consensus       158 ~~~--------~--------~~~---~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~~~  216 (615)
                      ..+        .        +.+   ...+++.+..++++ .+..++..+++++..+....+... ....+++.+.+.+.
T Consensus       166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l  245 (1049)
T 3m1i_C          166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM  245 (1049)
T ss_dssp             HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC
Confidence            221        1        111   22344445555443 467899999999988776554322 23456666663222


Q ss_pred             cCchhHHHHHHHHHHHHHhhc-Chh--hHHH-------hHHHHHHH--------------hcCCCChHHHHHHHHHHHHH
Q psy14014        217 DEQDSVRLLAVEACVSIASLL-SQS--DVEQ-------LVMPTLRQ--------------CSGDTSWRVRYMVADKFTDL  272 (615)
Q Consensus       217 d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~-------~l~~~l~~--------------~~~d~~~~vR~~~~~~l~~l  272 (615)
                       .++.+|..|++++..+...- ++.  .+..       .++..+..              ...|.++.....+++.+..+
T Consensus       246 -~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~  324 (1049)
T 3m1i_C          246 -TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY  324 (1049)
T ss_dssp             -HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred             -CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence             36789999999999888662 221  0111       12222211              12344566666777777665


Q ss_pred             HHHhCcc--------chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc--cccc--hhHHHHHhhHHHHHHhhC---
Q psy14014        273 QKAVGPE--------ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL--DAYN--QENIIMTYILPYVKDLVA---  337 (615)
Q Consensus       273 ~~~~~~~--------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~--~~~~--~~~~~~~~l~p~l~~~~~---  337 (615)
                      +..+...        .....+++.+.....+++.+|+..++..+..++..+  .+..  ....+...+++.+...+.   
T Consensus       325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e  404 (1049)
T 3m1i_C          325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE  404 (1049)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5432110        012345677777777888899999998888887743  1111  112345555665554331   


Q ss_pred             -------CC------------CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC--CChhHHHHHHHhhhHhhhh
Q psy14014        338 -------DP------------NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       338 -------d~------------~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d--~~~~vr~~a~~~l~~l~~~  396 (615)
                             |+            ++..|.++...|..++...+ ....+.+.+.+.+.+..  .+|..+.+++.+++.+.+.
T Consensus       405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~  483 (1049)
T 3m1i_C          405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT  483 (1049)
T ss_dssp             TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred             ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence                   10            12457777788888875443 44556677777777753  5789999999999988766


Q ss_pred             hchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh-----hcCCchHHHHHHHHhHHHHhhhCh-HhHHHHHHH
Q psy14014        397 IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA-----EDSKWRVRLAIIEYMPLLAGQLGV-EFFDEKLNA  470 (615)
Q Consensus       397 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~-----~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~  470 (615)
                      ++...-..      ++|.+.              +.+..+.     +++...+|..++..++.+++.+.. ..+...+++
T Consensus       484 ~~~~~e~~------~l~~v~--------------~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~  543 (1049)
T 3m1i_C          484 MSEDTEKR------FVVTVI--------------KDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL  543 (1049)
T ss_dssp             SCHHHHHH------HHHHHH--------------HHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred             cCchhhHH------HHHHHH--------------HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            54331111      011111              1222221     134455666788888887765433 234566788


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh----------hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhC
Q psy14014        471 LCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA----------QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      .++..+.|++..||..|+.++..++..++....          .+.++..+..+..+-....+.....+++.++...+
T Consensus       544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            888889999999999999999999998876532          23455555555666566667778899999987776

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.54  E-value=7.9e-11  Score=125.30  Aligned_cols=272  Identities=12%  Similarity=0.038  Sum_probs=172.6

Q ss_pred             hHHHHHHHhhc---CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC--------HHHHHHHHHHHH
Q psy14014        284 DLVQAFQMLLK---DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN--------QHVKSALASVIM  352 (615)
Q Consensus       284 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~--------~~vR~~~~~~l~  352 (615)
                      +.+..+...+.   ..++.+|..|+.+++-+......         ..+..|.+.+.+.+        +.+|..++..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34555556665   56789999999999987765432         13444555444433        789999999998


Q ss_pred             hhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHH
Q psy14014        353 GLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALS  432 (615)
Q Consensus       353 ~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~  432 (615)
                      .+.-..+.+    .+.+.+.+.+.+++..++..|.-+++.+.-..+....-+                          ..
T Consensus       463 la~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~--------------------------~L  512 (963)
T 4ady_A          463 LAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIH--------------------------DM  512 (963)
T ss_dssp             HHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHH--------------------------HH
T ss_pred             HHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHH--------------------------HH
Confidence            765444443    456667777777677778788877776543333322111                          11


Q ss_pred             HHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014        433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV  512 (615)
Q Consensus       433 i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~  512 (615)
                      +..+.++.+..+|..++..|+.+  .+|.+...+.++..+   ..+.++.+|..++.+++.-....|..    ..+..|+
T Consensus       513 L~~~~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL  583 (963)
T 4ady_A          513 FTYSQETQHGNITRGLAVGLALI--NYGRQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNN----SAVKRLL  583 (963)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHH
Confidence            22223455667888888888766  445544334433332   23677888888888776655444443    3344444


Q ss_pred             h-hhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhh
Q psy14014        513 A-MSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK  591 (615)
Q Consensus       513 ~-~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  591 (615)
                      . +..|.+..+|..|+.+||.+...  ..   +.+...+..+..+.++.||..++.+|+.++...+    ...+...|..
T Consensus       584 ~~~~~d~~d~VRraAViaLGlI~~g--~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~  654 (963)
T 4ady_A          584 HVAVSDSNDDVRRAAVIALGFVLLR--DY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDP  654 (963)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHTSS--SC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHH
T ss_pred             HHhccCCcHHHHHHHHHHHHhhccC--CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHH
Confidence            4 34577778898888888887522  11   2233333345677888999999999988864333    2345667788


Q ss_pred             hcCCCCccHHHHHHHHHHHHh
Q psy14014        592 LNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       592 l~~d~d~~v~~~a~~a~~~~~  612 (615)
                      +.+|+|.+||+.|..|++.+.
T Consensus       655 L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          655 LTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHS
T ss_pred             HccCCCHHHHHHHHHHHHHHh
Confidence            888999999999999888764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.54  E-value=7.4e-11  Score=130.80  Aligned_cols=436  Identities=10%  Similarity=0.088  Sum_probs=254.4

Q ss_pred             cchhhhHHhhhhhhccCCChh----hH----HHHHHHHHHHh-CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHH
Q psy14014        143 FTSRTSACGLFSVCYPRVTAG----VK----AELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  213 (615)
Q Consensus       143 ~~~r~~a~~~l~~~~~~~~~~----~~----~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~  213 (615)
                      ..+|-.|+.++......++++    .+    +.+++.+.... .+..+.+|...+.++..+++...++ .|+.+++-+.+
T Consensus        57 ~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~  135 (980)
T 3ibv_A           57 PSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQG  135 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHH
Confidence            455655555544333333333    33    44444444421 1346789999999999999876544 47778887777


Q ss_pred             hhccCch-hHHHHHHHHHHHHHhhcCh-----------------hhH--------HHhHHHHHHHhcCCCChHHHHHHHH
Q psy14014        214 LAQDEQD-SVRLLAVEACVSIASLLSQ-----------------SDV--------EQLVMPTLRQCSGDTSWRVRYMVAD  267 (615)
Q Consensus       214 ~~~d~~~-~vr~~a~~~l~~l~~~~~~-----------------~~~--------~~~l~~~l~~~~~d~~~~vR~~~~~  267 (615)
                      +++.++. ..-...+..+..+.+-+..                 +..        .+.++..+..+....+..++..+.+
T Consensus       136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~  215 (980)
T 3ibv_A          136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ  215 (980)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            7764433 2333445555544444321                 000        1122233333333356778888888


Q ss_pred             HHHHHHHHhCccch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHh--hHHHHHHhhC-CCCHHH
Q psy14014        268 KFTDLQKAVGPEIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY--ILPYVKDLVA-DPNQHV  343 (615)
Q Consensus       268 ~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~--l~p~l~~~~~-d~~~~v  343 (615)
                      +++....+.+.... ...+++.+.+++.+  +++|.+|+.+|..++..-........+...  +-+.+..+.. +.+.++
T Consensus       216 ~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~  293 (980)
T 3ibv_A          216 VYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNF  293 (980)
T ss_dssp             HHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_pred             HHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHH
Confidence            88888776554322 24788888888877  789999999999988753322111111111  1122222222 466777


Q ss_pred             HHHHHHHHHhhchhh-----cc-----------hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH----HH
Q psy14014        344 KSALASVIMGLSPIL-----GK-----------HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ----WR  403 (615)
Q Consensus       344 R~~~~~~l~~l~~~~-----g~-----------~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~  403 (615)
                      +...++.+..+++.+     ..           ......++|.++.++.+++++|-..++..+..+........    +.
T Consensus       294 ~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~  373 (980)
T 3ibv_A          294 DEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELS  373 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            766665554443321     11           02344678999999999889998888888777664432100    11


Q ss_pred             HHH--HHHhhhhhhhhccccchhhhhhhhHHHHHhhhc---C----CchHHHHHHHHhHHHHhhhChHhHHH----HHHH
Q psy14014        404 VRL--AIIEYMPLLAGQLGVEFFDEKLNALSIVELAED---S----KWRVRLAIIEYMPLLAGQLGVEFFDE----KLNA  470 (615)
Q Consensus       404 ~~~--~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~---~----~~~vr~~~~~~l~~l~~~~~~~~~~~----~l~~  470 (615)
                      ...  .+...++.+..++..+   +.      .++..+   +    --..|.... .+-..+..+|++.+.+    .+.+
T Consensus       374 ~~~~~~l~~Ll~~li~k~~yp---~d------~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~  443 (980)
T 3ibv_A          374 ASLKEFLKSLLEAIIKKMKYD---ES------QEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITS  443 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCC---TT------CCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCC---Cc------cccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHH
Confidence            100  0111122222222110   00      000000   0    012565555 5556666778777666    5555


Q ss_pred             HHHHhcC---CcchHHHHHHHHHHHHHHHHhChHH--------hhhchhHHHHhhhc-----CCCchHHHHHHHHHHHHH
Q psy14014        471 LCMTWLV---DHVYAIREAATLNLKKLVEQFGSEW--------AQSTVIPKVVAMSR-----DQNYLHRMTCLFCINVLA  534 (615)
Q Consensus       471 ~l~~~l~---d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~i~~~l~~~~~-----d~~~~~R~~a~~~l~~l~  534 (615)
                      .+.+.+.   +.+|..+++++.+++.+++.+....        ..+.+++.+..+++     ++++.+|..++.++|+..
T Consensus       444 ~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys  523 (980)
T 3ibv_A          444 SLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYA  523 (980)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTG
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence            5555553   4679999999999999998765321        11235555555544     789999999999999999


Q ss_pred             hhhCh-hhHHHhhHHHHHh--hCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014        535 EACGP-TVTANFLLPTVLN--MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  592 (615)
Q Consensus       535 ~~~~~-~~~~~~i~~~l~~--~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  592 (615)
                      +.+.. ..+.+.+++.+..  .+.++++.||..|+.++.++++.+++. +.+.+.+++..+
T Consensus       524 ~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l  583 (980)
T 3ibv_A          524 SFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAML  583 (980)
T ss_dssp             GGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHT
T ss_pred             HHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHH
Confidence            88653 2345566777777  777899999999999999999887643 234555555554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.53  E-value=9.8e-11  Score=122.08  Aligned_cols=478  Identities=11%  Similarity=0.059  Sum_probs=295.1

Q ss_pred             HHhcHHHHHHHhCcchhhccchhhhhhhcC---CcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCch----hH
Q psy14014         33 SIKKLSTIALALGQERTRGELIPFLTETIY---DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEE----TV  105 (615)
Q Consensus        33 a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~----~~  105 (615)
                      .+..+..+..+++.  .+++ +.|+.+.+.   ++.+||..+.-.+.++.+.- ..++-+.+...+..++-+.+    ..
T Consensus       152 ~l~~~~~l~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~  227 (778)
T 3opb_A          152 LLSIILQLLNKFKY--NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGND  227 (778)
T ss_dssp             HHHHHHHHHHHSCC--CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHcCc--cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCc
Confidence            34444444455543  3555 666655332   34468887776666655422 13444556666665652221    22


Q ss_pred             HHHHHHHHHHHHHhhcCh---hH-HhhhHHHHHHHhhcC-CCcchhhhHHhhhhhhccCCC--hhhHHHHHHHHHHHhCC
Q psy14014        106 VRDKAVESLRLISAQHSP---HD-LEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYPRVT--AGVKAELRSHFRNLCQD  178 (615)
Q Consensus       106 vr~~a~~~l~~l~~~~~~---~~-~~~~~l~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~--~~~~~~l~~~l~~l~~d  178 (615)
                      -...++.++..+....+.   .. +.+.+.|.+.+.... .......++..++...|..-.  +.+.++..+.+..++++
T Consensus       228 ~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~  307 (778)
T 3opb_A          228 PLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV  307 (778)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc
Confidence            233444444444444432   11 122345555544433 233344556667766554321  23345556666777654


Q ss_pred             CChHHHHHHHHhHHHHHHHhch-hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhH--HHhHHHHHHHhc
Q psy14014        179 DTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDV--EQLVMPTLRQCS  254 (615)
Q Consensus       179 ~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~  254 (615)
                        ..+|..++-.|..+...-+. .....++.+.+..++.+++...|+.|++.|..+.-.-.- +.+  .+.+++.+.+++
T Consensus       308 --~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ll  385 (778)
T 3opb_A          308 --EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMI  385 (778)
T ss_dssp             --GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHH
Confidence              57888888888887664322 223456888888888876655699999999887432211 111  123455566666


Q ss_pred             CC-CChHHHHHHHHHHHHHHHHhCcc-----------------------------------------chhhhHHHHHHHh
Q psy14014        255 GD-TSWRVRYMVADKFTDLQKAVGPE-----------------------------------------ITKTDLVQAFQML  292 (615)
Q Consensus       255 ~d-~~~~vR~~~~~~l~~l~~~~~~~-----------------------------------------~~~~~l~~~l~~~  292 (615)
                      ++ .+..+-+.++..|.++.......                                         +....++|.|..+
T Consensus       386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L  465 (778)
T 3opb_A          386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE  465 (778)
T ss_dssp             TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred             hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence            54 44456677777776665432210                                         0112478999999


Q ss_pred             hcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHH---HHHHHHHHHHhhchhhcchhhh-----
Q psy14014        293 LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQH---VKSALASVIMGLSPILGKHNTV-----  364 (615)
Q Consensus       293 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~---vR~~~~~~l~~l~~~~g~~~~~-----  364 (615)
                      ++...+.+|..|+++|..+...  ++.+.....+..+|.|..++.+....   +|..++.+|.++.....+....     
T Consensus       466 l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~  543 (778)
T 3opb_A          466 MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA  543 (778)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred             HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence            9999999999999999999764  55555556667888888888776544   8999999999987543322211     


Q ss_pred             hhhHHHHHHhhcC-CCh-------------hHHHHHHHhhhHhhhhhch--hHHHHHHHH-Hhhhhhhhhccccchhhhh
Q psy14014        365 DHLLPLFLSQLKD-ECP-------------EVRLNIISNLDCVNEVIGI--QQWRVRLAI-IEYMPLLAGQLGVEFFDEK  427 (615)
Q Consensus       365 ~~l~p~l~~~l~d-~~~-------------~vr~~a~~~l~~l~~~~~~--~~~~~~~~i-~~~l~~l~~~~~~~~~~~~  427 (615)
                      -..+|.+.++|.. ...             --+..|+.+|..+...-+.  +..++++.- ..++               
T Consensus       544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~---------------  608 (778)
T 3opb_A          544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW---------------  608 (778)
T ss_dssp             TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH---------------
T ss_pred             ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH---------------
Confidence            1568899999872 221             1267888888888765422  223332200 0112               


Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC---hHhHH---H---HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Q psy14014        428 LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG---VEFFD---E---KLNALCMTWLVDHVYAIREAATLNLKKLVEQF  498 (615)
Q Consensus       428 l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~---~---~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  498 (615)
                         |.+.+++.+.+..+|.++++.+..++..-.   .+++.   +   .-++.+..++...+..+|.+|..++..+....
T Consensus       609 ---~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~  685 (778)
T 3opb_A          609 ---STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI  685 (778)
T ss_dssp             ---HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence               678888888899999999999999986442   23321   1   13677889999899999999999999986543


Q ss_pred             Ch--HHhh--hchhHHHHhhhcC--CCchHHHHHHHHHHHHHhh
Q psy14014        499 GS--EWAQ--STVIPKVVAMSRD--QNYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       499 ~~--~~~~--~~i~~~l~~~~~d--~~~~~R~~a~~~l~~l~~~  536 (615)
                      ..  ....  ...++.+.+++++  ++..+|..++.++.++++.
T Consensus       686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            22  1111  2467778888888  8899999999999999873

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.52  E-value=1.7e-12  Score=121.84  Aligned_cols=228  Identities=16%  Similarity=0.129  Sum_probs=176.6

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hhH
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDV  242 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~  242 (615)
                      ++.+..+++++++.+|..++.++..++...+.   .......+|.+.+++++++..+|..|..++..++..-+.   ...
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            45667888888899999999999999865431   223457899999999999999999999999998764222   112


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN  319 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  319 (615)
                      ....+|.+..++.++++.+|..++.+++.++....   ........+|.+.+++++.++++|..++.+|..++..-+ ..
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~  162 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EA  162 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HH
Confidence            23578999999999999999999999999884211   111223679999999999999999999999999886422 11


Q ss_pred             hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014        320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~  396 (615)
                      .........+|.+..++.++++.+|..++.++..++..-..   .......+|.+.++++++++.+|..|+.+|..+...
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence            12234456889999999999999999999999999863111   111235789999999999999999999999888654


Q ss_pred             h
Q psy14014        397 I  397 (615)
Q Consensus       397 ~  397 (615)
                      .
T Consensus       243 ~  243 (252)
T 4hxt_A          243 G  243 (252)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.52  E-value=2.9e-11  Score=124.18  Aligned_cols=347  Identities=16%  Similarity=0.131  Sum_probs=219.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHH
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI  323 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  323 (615)
                      +|.+.+++..++..++..++..+..++..-.   ..+.....+|.|.+++++.+++++..|+.+|..++..-..+.+...
T Consensus        50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I  129 (584)
T 3l6x_A           50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI  129 (584)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            4444444444444454444444444442100   0011235788999999999999999999999988763223333334


Q ss_pred             HHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchhhc-chhhhhhhHHHHHHhhc------------------CCChhHH
Q psy14014        324 IMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLK------------------DECPEVR  383 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g-~~~~~~~l~p~l~~~l~------------------d~~~~vr  383 (615)
                      .....+|.|.+++.+ .+..++..++.+|..++..-. +..+....+|.|.+++.                  ..+..|+
T Consensus       130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~  209 (584)
T 3l6x_A          130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL  209 (584)
T ss_dssp             HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred             HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence            445678888888886 678999999999999976321 12233445777777651                  1246899


Q ss_pred             HHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhh------cCCchHHHHHHHHhHHHHh
Q psy14014        384 LNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAE------DSKWRVRLAIIEYMPLLAG  457 (615)
Q Consensus       384 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~------~~~~~vr~~~~~~l~~l~~  457 (615)
                      ..|..+|..+.....  ..++.+  .+.       -|       +. +.+...++      +.+.+..+.++.+|..++.
T Consensus       210 ~nAa~~L~NLs~~~~--~~R~~i--~~~-------~G-------li-~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~  270 (584)
T 3l6x_A          210 TNTAGCLRNVSSERS--EARRKL--REC-------DG-------LV-DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY  270 (584)
T ss_dssp             HHHHHHHHHHTSSCH--HHHHHH--HHS-------TT-------HH-HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCH--HHHHHH--HHc-------CC-------cH-HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence            999998887754221  111111  110       00       00 12222222      2345566666666655543


Q ss_pred             hh---------------------------ChHh-HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh---H---H
Q psy14014        458 QL---------------------------GVEF-FDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS---E---W  502 (615)
Q Consensus       458 ~~---------------------------~~~~-~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~---~---~  502 (615)
                      ..                           |.++ +....++.++.++. ..+..+++.|+.+|..++..-+.   .   .
T Consensus       271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~  350 (584)
T 3l6x_A          271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA  350 (584)
T ss_dssp             THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence            21                           1111 22456777888885 45788999999999999753211   1   1


Q ss_pred             -hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhHHHhhHHHHHhhCCCC--------CchHHHHHHHHHHHH
Q psy14014        503 -AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVTANFLLPTVLNMAGDN--------VANVRFNVAKTLQKI  572 (615)
Q Consensus       503 -~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~D~--------~~~vr~~a~~~l~~l  572 (615)
                       .....+|.|.+++.+++..++..++.+|++++..... ..+....+|.|..++.+.        ..+++..++.+|.++
T Consensus       351 v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL  430 (584)
T 3l6x_A          351 LRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV  430 (584)
T ss_dssp             HTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence             1134699999999999999999999999999876443 334567899999988765        357888999999998


Q ss_pred             hHhhh---hhhHHhhHHHHHhhhcCCC--CccHHHHHHHHHHHHh
Q psy14014        573 GPILE---TNVIQSQVKPALDKLNGDT--DVDVKYFAQEAISSIA  612 (615)
Q Consensus       573 ~~~~~---~~~~~~~~~~~l~~l~~d~--d~~v~~~a~~a~~~~~  612 (615)
                      ....+   .........|.+..|+.+.  .+.++..|..++..+.
T Consensus       431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          431 IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            74422   1223344556666655443  7889999999988775

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.50  E-value=6.1e-10  Score=116.19  Aligned_cols=483  Identities=9%  Similarity=0.045  Sum_probs=290.7

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhh----cCCCcchhhhHHhhhhhhccCCChhh-----HHHHHHH
Q psy14014        101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA----SGDWFTSRTSACGLFSVCYPRVTAGV-----KAELRSH  171 (615)
Q Consensus       101 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~  171 (615)
                      .++++||..++-++.++.+..+ +.....+..++..+.    .+-....-..+...+..+++.+++-.     .+.+.+.
T Consensus       181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~  259 (778)
T 3opb_A          181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL  259 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred             cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence            4567899999999988887766 455556666666544    22223344455666666666664321     1234445


Q ss_pred             HHHHh-CCCChHHHHHHHHhHHHHHHHh-chhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-hHHHhHHH
Q psy14014        172 FRNLC-QDDTPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-DVEQLVMP  248 (615)
Q Consensus       172 l~~l~-~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~  248 (615)
                      +.... +.++..+...+++.+...|-.- ..+......+|.+.+.+++  ..+|..|.-+|..+...-+.. .-...+.+
T Consensus       260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~  337 (778)
T 3opb_A          260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE  337 (778)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            55443 4566777777777766654211 1233345566777777765  578998888888876544321 22345788


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHh--Cccc-hhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAV--GPEI-TKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLDAYNQENII  324 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  324 (615)
                      .+.+.+.+++...|..+++.|..+...-  .... ....++..+.+++++ .+..+...++..+..+....+.......-
T Consensus       338 ~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~  417 (778)
T 3opb_A          338 IFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX  417 (778)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence            8888888777666888998888775311  0111 123568888888885 66778888888888888765432111001


Q ss_pred             HHhhHHHHHHhh----CCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014        325 MTYILPYVKDLV----ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ  400 (615)
Q Consensus       325 ~~~l~p~l~~~~----~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  400 (615)
                      ...+.++...-.    .+.++.-...  .....-...+    ....++|.+..++...++.+|..+++++..+...-   
T Consensus       418 l~~Lk~~A~~~~p~~~~~d~~~~~~~--~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~---  488 (778)
T 3opb_A          418 XXXXXXXXXXXXPAADKVGAEKAAKE--DILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK---  488 (778)
T ss_dssp             -----------------CCTHHHHHH--HHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG---
T ss_pred             hhhhhhhccccCcccCcccccccchH--HHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH---
Confidence            122222211100    0001000000  0000000011    11247899999999999999999999998886432   


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCc---hHHHHHHHHhHHHHhhhChHhHH-----HHHHHHH
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKW---RVRLAIIEYMPLLAGQLGVEFFD-----EKLNALC  472 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~---~vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l  472 (615)
                      ..+..+.--..+                  +.+..++.+...   +.|..|+.+|..+.....+....     ...+|.+
T Consensus       489 ~~R~~lvqqGal------------------~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pL  550 (778)
T 3opb_A          489 NFIPQLAQQGAV------------------KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFL  550 (778)
T ss_dssp             GGHHHHHHTTHH------------------HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHH
T ss_pred             HHHHHHHHCCCH------------------HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHH
Confidence            112211000011                  455666655433   38999999999987544332210     1467888


Q ss_pred             HHhcCC-cch-------------HHHHHHHHHHHHHHHHhCh---HH---hhh--chhHHHHhhhcCCCchHHHHHHHHH
Q psy14014        473 MTWLVD-HVY-------------AIREAATLNLKKLVEQFGS---EW---AQS--TVIPKVVAMSRDQNYLHRMTCLFCI  530 (615)
Q Consensus       473 ~~~l~d-~~~-------------~vR~~a~~~l~~l~~~~~~---~~---~~~--~i~~~l~~~~~d~~~~~R~~a~~~l  530 (615)
                      +.+|.. +..             ..+..|+.+|.+++..-+.   +.   ...  ..+|.+.+++.+.+..+|.+|++++
T Consensus       551 v~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI  630 (778)
T 3opb_A          551 FELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI  630 (778)
T ss_dssp             HHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            898872 221             2377899999999875321   11   222  4789999999999999999999999


Q ss_pred             HHHHhhhCh---hhHH---Hh---hHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--hhH-H-hhHHHHHhhhcCC--
Q psy14014        531 NVLAEACGP---TVTA---NF---LLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVI-Q-SQVKPALDKLNGD--  595 (615)
Q Consensus       531 ~~l~~~~~~---~~~~---~~---i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~~~-~-~~~~~~l~~l~~d--  595 (615)
                      .+++..-..   .++.   +.   -++.|..++...+..+|.+|+.+|+.+....+.  ... . ....+.+..++.+  
T Consensus       631 ~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~  710 (778)
T 3opb_A          631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI  710 (778)
T ss_dssp             HHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC
Confidence            999854321   2221   11   277889999999999999999999998643331  111 1 1233333334445  


Q ss_pred             CCccHHHHHHHHHHHHhh
Q psy14014        596 TDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       596 ~d~~v~~~a~~a~~~~~~  613 (615)
                      +|.+++..+..++..+++
T Consensus       711 ~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          711 DDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            799999999999999886

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.50  E-value=7.3e-13  Score=122.70  Aligned_cols=199  Identities=11%  Similarity=0.124  Sum_probs=158.1

Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHH-HHhhcCh----hhHHHhHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhC-
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVS-IASLLSQ----SDVEQLVMPTLRQCS-GDTSWRVRYMVADKFTDLQKAVG-  277 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~-  277 (615)
                      +.+-+-|.+.+++.+|..|+.|+..+.. +.+..+.    ..-...++..+.+.+ +|++..||..++++++.++..++ 
T Consensus        15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            3444456667788889999998888888 7654321    111235678888888 79999999999999999999887 


Q ss_pred             ccch---hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhh
Q psy14014        278 PEIT---KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL  354 (615)
Q Consensus       278 ~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l  354 (615)
                      +...   ...++|.++..++|..+.||.++..++..++..+++.... .+++.+++.+...+++++|.+|..++.++..+
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~  173 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQLFNAS  173 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            5543   3468999999999999999999999999999987542210 01456888888889999999999999999999


Q ss_pred             chhhcc--h---hhh-hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014        355 SPILGK--H---NTV-DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV  404 (615)
Q Consensus       355 ~~~~g~--~---~~~-~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  404 (615)
                      ....+.  .   .+. +.++|.+.+++.|.+.+||..|..+++.+...+|...+..
T Consensus       174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p  229 (249)
T 2qk1_A          174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVK  229 (249)
T ss_dssp             HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            887663  2   346 7899999999999999999999999999999998765443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.49  E-value=1.1e-11  Score=126.60  Aligned_cols=343  Identities=13%  Similarity=0.106  Sum_probs=213.9

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014        248 PTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII  324 (615)
Q Consensus       248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  324 (615)
                      |.+..++..+++.++..++.++..++..-..   .......+|.+.+++++.+++++..|+.+|..++.. .++.+....
T Consensus         5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~   83 (457)
T 1xm9_A            5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETR   83 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            3344444444555555555555554421110   011235788899999999999999999999988763 123333333


Q ss_pred             HHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchhhc-chhhhhhhHHHHHHhhc--------CC--------ChhHHHHH
Q psy14014        325 MTYILPYVKDLVA-DPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLK--------DE--------CPEVRLNI  386 (615)
Q Consensus       325 ~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~~g-~~~~~~~l~p~l~~~l~--------d~--------~~~vr~~a  386 (615)
                      ....+|.|.+++. +.++.++..++++|..++..-. +.......+|.+.+++.        +.        +.+++..|
T Consensus        84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a  163 (457)
T 1xm9_A           84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence            4567899999998 8899999999999999986511 12233367899999882        22        35666799


Q ss_pred             HHhhhHhhhhhchhHHHHHHHHH-hhhhhhhhccccchhhhhhhhHHHHHhhhc------CCchHHHHHHHHhHHHHhh-
Q psy14014        387 ISNLDCVNEVIGIQQWRVRLAII-EYMPLLAGQLGVEFFDEKLNALSIVELAED------SKWRVRLAIIEYMPLLAGQ-  458 (615)
Q Consensus       387 ~~~l~~l~~~~~~~~~~~~~~i~-~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~------~~~~vr~~~~~~l~~l~~~-  458 (615)
                      +.+|..+...   +..++.+.-. ..+|                  .+..++++      .+.++++.++..+..++.. 
T Consensus       164 ~~aL~nLs~~---~~~~~~i~~~~g~i~------------------~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~  222 (457)
T 1xm9_A          164 TGCLRNLSSA---DAGRQTMRNYSGLID------------------SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL  222 (457)
T ss_dssp             HHHHHHHTTS---HHHHHHHTTSTTHHH------------------HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTH
T ss_pred             HHHHHHHccC---HHHHHHHHHcCCCHH------------------HHHHHHHhhccccCCchHHHHHHHHHHHhcccch
Confidence            9998887653   2222211000 1222                  22322221      2333444443333333200 


Q ss_pred             ---------------------------h------------------------ChH-hHHHHHHHHHHHhcCCc-chHHHH
Q psy14014        459 ---------------------------L------------------------GVE-FFDEKLNALCMTWLVDH-VYAIRE  485 (615)
Q Consensus       459 ---------------------------~------------------------~~~-~~~~~l~~~l~~~l~d~-~~~vR~  485 (615)
                                                 +                        |.+ ......++.+..++.+. +..+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e  302 (457)
T 1xm9_A          223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE  302 (457)
T ss_dssp             HHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred             hccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHH
Confidence                                       0                        111 12345667777777543 578999


Q ss_pred             HHHHHHHHHHHHhCh---H----Hh-hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-hHHHhhHHHHHhhCCC
Q psy14014        486 AATLNLKKLVEQFGS---E----WA-QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT-VTANFLLPTVLNMAGD  556 (615)
Q Consensus       486 ~a~~~l~~l~~~~~~---~----~~-~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~D  556 (615)
                      .|+.++..++..-+.   .    .. ....+|.|.+++.+++..+|..+++++.+++..-... .+....+|.|.+++..
T Consensus       303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~  382 (457)
T 1xm9_A          303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS  382 (457)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTS
T ss_pred             HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccC
Confidence            999999999753322   1    11 1357899999999999999999999999998643222 2345688999998877


Q ss_pred             CCc------hHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcCCC-CccHHHHHHHHHHHHh
Q psy14014        557 NVA------NVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNGDT-DVDVKYFAQEAISSIA  612 (615)
Q Consensus       557 ~~~------~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d~-d~~v~~~a~~a~~~~~  612 (615)
                      .++      ++...++.+++.+....+..   .......+.+..|...+ +..++..|...+..+.
T Consensus       383 ~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~  448 (457)
T 1xm9_A          383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            654      57778889998887543211   11223455555555555 8899999999988764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.49  E-value=1.9e-11  Score=124.78  Aligned_cols=363  Identities=12%  Similarity=0.060  Sum_probs=224.8

Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccch
Q psy14014        208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEIT  281 (615)
Q Consensus       208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~  281 (615)
                      +|.+..+++.+++.++..|..++..++..-+.   .......+|.+.+++.+++..++..++.+|..++..-.   ....
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~   83 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45566666666677777777777766543222   11223467777777777777788888888777764200   0011


Q ss_pred             hhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh--------CCC--------CHHHH
Q psy14014        282 KTDLVQAFQMLLK-DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV--------ADP--------NQHVK  344 (615)
Q Consensus       282 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~--------~d~--------~~~vR  344 (615)
                      ....+|.|.++++ +.+++++..|+.+|..++..  ++.+..... ..+|.|.+++        .++        +..++
T Consensus        84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            2356888999998 77899999999999998875  333333333 7888888888        332        45667


Q ss_pred             HHHHHHHHhhchhhc-chhhh--hhhHHHHHHhhcC------CChhHHHHHHHhhhHhhhhh------chhHHHH-----
Q psy14014        345 SALASVIMGLSPILG-KHNTV--DHLLPLFLSQLKD------ECPEVRLNIISNLDCVNEVI------GIQQWRV-----  404 (615)
Q Consensus       345 ~~~~~~l~~l~~~~g-~~~~~--~~l~p~l~~~l~d------~~~~vr~~a~~~l~~l~~~~------~~~~~~~-----  404 (615)
                      +.++++|.+++..-. .....  +..+|.+..++++      .+..++..++..+..+....      +......     
T Consensus       161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            799999999986511 11222  2577888877764      34567777766655543111      0000000     


Q ss_pred             --HHHHHhhhhhhh-----------------hccccch-hhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChH-
Q psy14014        405 --RLAIIEYMPLLA-----------------GQLGVEF-FDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVE-  462 (615)
Q Consensus       405 --~~~i~~~l~~l~-----------------~~~~~~~-~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~-  462 (615)
                        .......+....                 ..-|.+. +..... +.+..++.+ ++..+++.++.++..++..-+.. 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI-RTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH-HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence              000000000000                 0001111 111111 445555543 56789999999999997533321 


Q ss_pred             ------hH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHHhhhcCCCc------hHHHHHHH
Q psy14014        463 ------FF-DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVVAMSRDQNY------LHRMTCLF  528 (615)
Q Consensus       463 ------~~-~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~------~~R~~a~~  528 (615)
                            .+ ....+|.+.+++.+.+..+|..|+.++..++..-.. .......+|.|.+++...++      .+...++.
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~  399 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence                  11 134678999999999999999999999999763211 12234588999998887654      35567888


Q ss_pred             HHHHHHhhhChhh---HHHhhHHHHHhhCCCC-CchHHHHHHHHHHHHhH
Q psy14014        529 CINVLAEACGPTV---TANFLLPTVLNMAGDN-VANVRFNVAKTLQKIGP  574 (615)
Q Consensus       529 ~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~-~~~vr~~a~~~l~~l~~  574 (615)
                      +++++...-+...   .....+|.|..++..+ +..++..|+..|..+..
T Consensus       400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            8888875433211   1346788899988888 89999999999998764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.48  E-value=1.7e-12  Score=121.81  Aligned_cols=225  Identities=12%  Similarity=0.123  Sum_probs=172.2

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hH
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DV  242 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~  242 (615)
                      .+.+..++.++++++|..++..+..+.....+   .......+|.+.++++++++.+|..|+.++..++...+..   ..
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            34566777888999999999999766554211   2334578899999999999999999999999987643321   12


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN  319 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  319 (615)
                      ....+|.+.++++++++.+|..++.+|+.++......   ......+|.+.+++++.++.+|..|+.+|..++..-+ +.
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~  172 (252)
T 4db8_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQ  172 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HH
Confidence            2347899999999999999999999999987532211   1233689999999999999999999999999986422 11


Q ss_pred             hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hh-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      ........++|.+.+++.++++.+|..++.+|+.++..-..  .. .....+|.+.+++.+.++.+|..|+.+|..+.
T Consensus       173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            12223466889999999999999999999999999742111  11 22357899999999999999999999887664

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.48  E-value=8.3e-09  Score=114.56  Aligned_cols=419  Identities=10%  Similarity=-0.001  Sum_probs=256.8

Q ss_pred             HHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCC--------CCC----------cchh
Q psy14014         27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPN--------VGG----------PEYV   88 (615)
Q Consensus        27 ~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~--------~~~----------~~~~   88 (615)
                      +.+|......+..+++...|+ .|+.+++-+.+.+..+..........|..+.+.        +..          ....
T Consensus       114 ~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~  192 (1023)
T 4hat_C          114 KNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF  192 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            456777888999999887776 688999999888876554333333333222221        110          1123


Q ss_pred             hhchHHHhhhhc-CchhHHHHHHHHHHHHHHhhcChhHH-hhhHHHHHH-HhhcCCCcchhhhHHhhhhhhccC-C-Ch-
Q psy14014         89 HCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHDL-EAHFVPLVQ-RLASGDWFTSRTSACGLFSVCYPR-V-TA-  162 (615)
Q Consensus        89 ~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~-~l~~~~~~~~r~~a~~~l~~~~~~-~-~~-  162 (615)
                      +.+++.+..++. .+.+.+...+++++.....+++...+ ...+++.+. .+..+  ...|..|+.++..+... . ++ 
T Consensus       193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCch
Confidence            445555555543 34677888999999999999887654 445778777 66653  35788899988887753 2 22 


Q ss_pred             -hhHH-------HHHHHH-H-------------HHhCCCChHHHHHHHHhHHHHHHHhchhh--------hHhhhHHHHH
Q psy14014        163 -GVKA-------ELRSHF-R-------------NLCQDDTPMVRRAAAGKLGELAKVVEVDY--------LKTDIIPMFV  212 (615)
Q Consensus       163 -~~~~-------~l~~~l-~-------------~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~ll~~l~  212 (615)
                       ...+       .+++.+ .             ....+.+.+..+..+..+..+++....-.        .....+..+.
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             1211       122211 1             01123456777778888877776543311        1111233555


Q ss_pred             HhhccCchhHHHHHHHHHHHHHhhcChh--------hHHHhHHHHHHHhcC----------C-CCh----------HHHH
Q psy14014        213 NLAQDEQDSVRLLAVEACVSIASLLSQS--------DVEQLVMPTLRQCSG----------D-TSW----------RVRY  263 (615)
Q Consensus       213 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~~~----------d-~~~----------~vR~  263 (615)
                      .....++.++-..+++.|..+++.+-.+        .+...+++.+.+-+.          | .+|          ....
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f  430 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY  430 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence            6666778888889999999888754321        122234555543321          1 112          1111


Q ss_pred             -HHHHHHHHHHHHhCccchhhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC---
Q psy14014        264 -MVADKFTDLQKAVGPEITKTDLVQAFQMLLKD--SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA---  337 (615)
Q Consensus       264 -~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~---  337 (615)
                       ..-.+|..+....+. .....+++.+.+.+.+  .+|..|++++.+++.+...+.++. ...+++.++|.+..+..   
T Consensus       431 ~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~  508 (1023)
T 4hat_C          431 KSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKR  508 (1023)
T ss_dssp             HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccc
Confidence             011445555443332 2233455555555554  679999999999999998765442 33678888998888876   


Q ss_pred             --CCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhh
Q psy14014        338 --DPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPL  414 (615)
Q Consensus       338 --d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~  414 (615)
                        |+...||.++++.+|+.++.+.. ..+.+.++..+.+.+.+.++.|...|+.++..+++..+..-          .. 
T Consensus       509 ~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l----------~~-  577 (1023)
T 4hat_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF----------VI-  577 (1023)
T ss_dssp             SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH----------HS-
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh----------hc-
Confidence              46678889999999999998753 34566677778888888889999999999998877554211          00 


Q ss_pred             hhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh
Q psy14014        415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF  463 (615)
Q Consensus       415 l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  463 (615)
                      ....-...|+.+.+  ..+.....+-...-+..+.++++.+.+..+...
T Consensus       578 ~~~~e~~p~~~~il--~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~  624 (1023)
T 4hat_C          578 QQPRESEPFIQTII--RDIQKTTADLQPQQVHTFYKACGIIISEERSVA  624 (1023)
T ss_dssp             CCTTCSSCHHHHHH--HTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             cCCCCCchhHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence            00000012333332  233444444566677889999999999887544

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.48  E-value=6.6e-11  Score=121.59  Aligned_cols=367  Identities=13%  Similarity=0.061  Sum_probs=230.6

Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc--
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP--  278 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--  278 (615)
                      ...-+|.+.+++..+++.++..|..++..++..-...   ......+|.|.+++.+++..++..++.+|..++..-+.  
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            3445677777777777777777777777666432211   11223677788888888888888888888877642111  


Q ss_pred             --cchhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh------------------C
Q psy14014        279 --EITKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV------------------A  337 (615)
Q Consensus       279 --~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~------------------~  337 (615)
                        .+.....+|.|+.+++. .+.++++.|+.+|-.+...  ++.+. .+....+|.|.+++                  .
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~-~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKM-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHH-HHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhH-HHHhccHHHHHHHHhcccccccccccccccccc
Confidence              11223578888888886 5778899988888887762  22222 23345677777654                  1


Q ss_pred             CCCHHHHHHHHHHHHhhchhhc--chhhh--hhhHHHHHHhhcC------CChhHHHHHHHhhhHhhhhhchh-----HH
Q psy14014        338 DPNQHVKSALASVIMGLSPILG--KHNTV--DHLLPLFLSQLKD------ECPEVRLNIISNLDCVNEVIGIQ-----QW  402 (615)
Q Consensus       338 d~~~~vR~~~~~~l~~l~~~~g--~~~~~--~~l~p~l~~~l~d------~~~~vr~~a~~~l~~l~~~~~~~-----~~  402 (615)
                      ..+..|+..++.+|.+++..-.  .....  .-+++.++.++++      .+...++.|+.+|..+......+     .+
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~  282 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY  282 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence            2357999999999999975321  12221  2355666666542      45677888888876655322110     01


Q ss_pred             HHHHHHHhhhhhhhhccccchh-hhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhCh--H----hH-HHHHHHHHH
Q psy14014        403 RVRLAIIEYMPLLAGQLGVEFF-DEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGV--E----FF-DEKLNALCM  473 (615)
Q Consensus       403 ~~~~~i~~~l~~l~~~~~~~~~-~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~--~----~~-~~~l~~~l~  473 (615)
                      .+.......-+.....-|.+.+ ..... +.+..++. ..+..+++.++.+|..++..-+.  .    .+ ....+|.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v-~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          283 QEAAPNVANNTGTSPARGYELLFQPEVV-RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             -------------CCCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhcccccccccccCchhHHHHhcccHH-HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence            0000000000011112222221 11111 45566664 46788999999999999753221  1    11 145689999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHHhhhcCC--------CchHHHHHHHHHHHHHhhhCh---hh
Q psy14014        474 TWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVVAMSRDQ--------NYLHRMTCLFCINVLAEACGP---TV  541 (615)
Q Consensus       474 ~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~--------~~~~R~~a~~~l~~l~~~~~~---~~  541 (615)
                      +++.+++..+++.|+.+|..++..-.. ..+....+|.|..++.+.        +..++..++.+++++...-..   ..
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I  441 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL  441 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999999999999999875432 223345889999988775        345678899999988633111   12


Q ss_pred             HHHhhHHHHHhhCCCC--CchHHHHHHHHHHHHhH
Q psy14014        542 TANFLLPTVLNMAGDN--VANVRFNVAKTLQKIGP  574 (615)
Q Consensus       542 ~~~~i~~~l~~~~~D~--~~~vr~~a~~~l~~l~~  574 (615)
                      .....+|.|..++.+.  .+.++..|+.+|..+..
T Consensus       442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            3456889999988775  78999999999999864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.47  E-value=3.8e-09  Score=112.61  Aligned_cols=331  Identities=14%  Similarity=0.063  Sum_probs=219.6

Q ss_pred             CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc
Q psy14014        218 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSG---DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK  294 (615)
Q Consensus       218 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~---d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  294 (615)
                      ..+..+-.|..+++.+-..-..+     .+..+.+.+.   ..+..+|..++..+|.+....+.     ..+..|...+.
T Consensus       370 ~~~~~k~sA~aSLGlIh~g~~~~-----gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~  439 (963)
T 4ady_A          370 AQNWAKFTATASLGVIHKGNLLE-----GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIV  439 (963)
T ss_dssp             CCTHHHHHHHHHHHHHTSSCTTT-----HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhhhccCchHH-----HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHc
Confidence            34456777777887764433222     3555666665   56789999999999998766553     35566666665


Q ss_pred             CCc--------HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhh
Q psy14014        295 DSE--------AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDH  366 (615)
Q Consensus       295 d~~--------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~  366 (615)
                      +.+        +.+|..|+.+|+...-....        +.++..|.+.+.|.+..+|..++.+++-+--..|.......
T Consensus       440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~  511 (963)
T 4ady_A          440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHD  511 (963)
T ss_dssp             HHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             CccccccccccHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHH
Confidence            544        67999999999876432222        23556666777777778888888888876444454444444


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHH
Q psy14014        367 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRL  446 (615)
Q Consensus       367 l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~  446 (615)
                      ++..+.   .+.+..+|..+..+|+.+.  +|...         ..+                 ..+..+..+.+|-+|.
T Consensus       512 LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e---------~~~-----------------~li~~L~~~~dp~vRy  560 (963)
T 4ady_A          512 MFTYSQ---ETQHGNITRGLAVGLALIN--YGRQE---------LAD-----------------DLITKMLASDESLLRY  560 (963)
T ss_dssp             HHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGG---------GGH-----------------HHHHHHHHCSCHHHHH
T ss_pred             HHHHHh---ccCcHHHHHHHHHHHHhhh--CCChH---------HHH-----------------HHHHHHHhCCCHHHHH
Confidence            444333   4567789999888887552  12111         010                 1223344578899999


Q ss_pred             HHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh-hhcCCCchHHHH
Q psy14014        447 AIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA-MSRDQNYLHRMT  525 (615)
Q Consensus       447 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~~R~~  525 (615)
                      .++.+++.-.-..|.....+.++.   .+..|.+..||.+|+.+|+.+.-  |..    ...|.+.. +..+.++.+|..
T Consensus       561 gaa~alglAyaGTGn~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~L~~~~d~~VR~g  631 (963)
T 4ady_A          561 GGAFTIALAYAGTGNNSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQLLSKSHNAHVRCG  631 (963)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTTGGGCSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHH---HhccCCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHHHHhcCCHHHHHH
Confidence            999888766555666433333333   33457788899999999988742  322    35666666 556789999999


Q ss_pred             HHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---cC--CCCccH
Q psy14014        526 CLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL---NG--DTDVDV  600 (615)
Q Consensus       526 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~--d~d~~v  600 (615)
                      ++.++|.+...-+.    ..++..|.++..|++..||.+|+.+|+.+.....+. ..+.+..+++.|   ..  ++|..+
T Consensus       632 AalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna-~~~rva~~l~~L~~~~~dk~~d~~~  706 (963)
T 4ady_A          632 TAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK-LNPQVADINKNFLSVITNKHQEGLA  706 (963)
T ss_dssp             HHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT-TCTTHHHHHHHHHHHHHCSSSCHHH
T ss_pred             HHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc-cchHHHHHHHHHHHHHhcccccHHH
Confidence            99999998643332    346778888899999999999999999998654322 112334433333   33  467889


Q ss_pred             HHHHHHHHHHH
Q psy14014        601 KYFAQEAISSI  611 (615)
Q Consensus       601 ~~~a~~a~~~~  611 (615)
                      +.-+.-|.+.+
T Consensus       707 ~fga~iAqGll  717 (963)
T 4ady_A          707 KFGACVAQGIM  717 (963)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.46  E-value=5.4e-12  Score=116.88  Aligned_cols=191  Identities=13%  Similarity=0.144  Sum_probs=157.3

Q ss_pred             HHHHhCCCChHHHHHHHHhHHH-HHHHhch----hhhHhhhHHHHHHhh-ccCchhHHHHHHHHHHHHHhhcC-hh---h
Q psy14014        172 FRNLCQDDTPMVRRAAAGKLGE-LAKVVEV----DYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLS-QS---D  241 (615)
Q Consensus       172 l~~l~~d~~~~vR~~a~~~l~~-l~~~~~~----~~~~~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~-~~---~  241 (615)
                      |...+++++|..|+.++..+.. +++..+.    ......++..+.+.+ +|.+..||..|+.+++.+++.++ +.   .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            5666789999999999999999 8754221    111246788888888 79999999999999999999987 42   4


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                      +...++|.+.+.+.|....||.++..++..++...++..   ..+.+++.+...+++.++.+|..++..+..++...+..
T Consensus       101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~  180 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG  180 (249)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence            556689999999999999999999999999998874321   14578999999999999999999999999999876531


Q ss_pred             -chhHHHH-HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014        319 -NQENIIM-TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN  362 (615)
Q Consensus       319 -~~~~~~~-~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~  362 (615)
                       ..-..++ +.++|.+.++++|.+..||.++.++++.++..+|.+.
T Consensus       181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~  226 (249)
T 2qk1_A          181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT  226 (249)
T ss_dssp             SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence             1112356 8899999999999999999999999999999999754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.46  E-value=1.1e-11  Score=116.32  Aligned_cols=233  Identities=13%  Similarity=0.064  Sum_probs=172.8

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccc
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEI  280 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~  280 (615)
                      .+|.+.++++++++.+|..|..++..++...+..   ......+|.+.+++++++..+|..++.+++.++....   ...
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            3677888889889999999999999998765421   1223588999999999999999999999999875311   111


Q ss_pred             hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc
Q psy14014        281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       281 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      .....+|.+..+++++++++|..|+.+|..++... ++..........+|.+.+++.++++.+|..++.+++.++.....
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            22367999999999999999999999999998532 22222233456889999999999999999999999999864221


Q ss_pred             ---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh
Q psy14014        361 ---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA  437 (615)
Q Consensus       361 ---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~  437 (615)
                         .......+|.+.+++.++++.+|..++.++..+....  ....+.+     .            ..... +.+.+++
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l-----~------------~~~~i-~~L~~ll  221 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAI-----V------------DAGGV-EVLQKLL  221 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--HHHHHHH-----H------------HTTHH-HHHHHGG
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHH-----H------------HCCCH-HHHHHHH
Confidence               1123457899999999999999999999998886521  1111111     0            00011 5677777


Q ss_pred             hcCCchHHHHHHHHhHHHHhhhC
Q psy14014        438 EDSKWRVRLAIIEYMPLLAGQLG  460 (615)
Q Consensus       438 ~~~~~~vr~~~~~~l~~l~~~~~  460 (615)
                      +++++.+|..++.++..++...+
T Consensus       222 ~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          222 TSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888876443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.46  E-value=4.7e-11  Score=119.86  Aligned_cols=253  Identities=11%  Similarity=0.026  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-----------CCCHHHHHHHHHHHHhhchhhcc--hhh--hhhh
Q psy14014        303 AAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-----------DPNQHVKSALASVIMGLSPILGK--HNT--VDHL  367 (615)
Q Consensus       303 ~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-----------d~~~~vR~~~~~~l~~l~~~~g~--~~~--~~~l  367 (615)
                      .|+.+|..+..  .++.+........+|.|..++.           +.++.++..++++|..++..-..  ..+  ....
T Consensus       167 qAv~aL~nls~--~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          167 PAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             HHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            78888888754  3444444444556777777663           13467899999999999853221  122  2346


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCchHHH
Q psy14014        368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKWRVRL  446 (615)
Q Consensus       368 ~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~~vr~  446 (615)
                      +|.+++++..++++++..|+.+|..+..... ...+..+.-...+                  |.+.++ .++.+..++.
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI------------------~~LV~lLl~s~~~~v~~  305 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSV------------------KALMECALEVKKESTLK  305 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHH------------------HHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCH------------------HHHHHHHhcCCCHHHHH
Confidence            8999999999999999999999988754211 1111111000112                  566665 4556788999


Q ss_pred             HHHHHhHHHHhhh-C--hHhH-HHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHh--ChHH----hhhchhHHHH
Q psy14014        447 AIIEYMPLLAGQL-G--VEFF-DEKLNALCMTWLVDHVY----AIREAATLNLKKLVEQF--GSEW----AQSTVIPKVV  512 (615)
Q Consensus       447 ~~~~~l~~l~~~~-~--~~~~-~~~l~~~l~~~l~d~~~----~vR~~a~~~l~~l~~~~--~~~~----~~~~i~~~l~  512 (615)
                      .++.++..++... +  .... ....+|.+..++.+...    .+++.|..+|..++..+  +++.    .....+|.|.
T Consensus       306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv  385 (458)
T 3nmz_A          306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL  385 (458)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence            9999988887622 1  1222 24578888888876543    58999999999998631  2221    1234789999


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014        513 AMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~  576 (615)
                      .++.+++..++..|+.++++++.....   .......+|.|..++..+++.+|..|+.+|.++....
T Consensus       386 ~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          386 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999732111   1224568899999999999999999999999998654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.45  E-value=1.9e-09  Score=119.57  Aligned_cols=517  Identities=9%  Similarity=0.057  Sum_probs=281.3

Q ss_pred             cchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCC----CCCc--
Q psy14014         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPN----VGGP--   85 (615)
Q Consensus        12 ~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~----~~~~--   85 (615)
                      +..+..++..+.+++...|..|-+.|...-.  .++ .|..+..++..  +.+..+|..++..|...+..    +..+  
T Consensus        15 v~~Le~av~~ly~p~~~~r~~A~~~L~~~q~--sp~-aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~   89 (1023)
T 4hat_C           15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD--NPD-AWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHR   89 (1023)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--CTT-GGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHc--Ccc-HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence            4567788888888777788888888876532  233 56655555532  22335888888877765541    1111  


Q ss_pred             -chhhhchHHHhhhhcCc-----hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccC
Q psy14014         86 -EYVHCLLPPLESLATVE-----ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (615)
Q Consensus        86 -~~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~  159 (615)
                       ...+.++..+.+..+++     ...+|...+.++..++.+.-++ -.+.+++.+..+.... ......+..++..+.+.
T Consensus        90 ~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EE  167 (1023)
T 4hat_C           90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEE  167 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence             11233444444443343     2455666666666666654332 2445555554444321 11111111111111100


Q ss_pred             CChhhHHHHHHHHHHHhCCCChHHHH-HHHHhHHHHHHHhchhhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhc
Q psy14014        160 VTAGVKAELRSHFRNLCQDDTPMVRR-AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLL  237 (615)
Q Consensus       160 ~~~~~~~~l~~~l~~l~~d~~~~vR~-~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~  237 (615)
                                  +.....+....-|+ ..-+.+..-         .+.+++.+...++ ..+..+...+++++....+.+
T Consensus       168 ------------V~~~~~~~l~~~r~~~lk~~l~~~---------~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI  226 (1023)
T 4hat_C          168 ------------VFDFSAEQMTQAKALHLKNSMSKE---------FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI  226 (1023)
T ss_dssp             ------------HHTSCTTTSCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS
T ss_pred             ------------HHHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence                        00000111111111 111111111         2345555555554 346678888999999988887


Q ss_pred             ChhhH-HHhHHHHHH-HhcCCCChHHHHHHHHHHHHHHHH-h-Ccc-chhhh-------HHHHH-HH-------------
Q psy14014        238 SQSDV-EQLVMPTLR-QCSGDTSWRVRYMVADKFTDLQKA-V-GPE-ITKTD-------LVQAF-QM-------------  291 (615)
Q Consensus       238 ~~~~~-~~~l~~~l~-~~~~d~~~~vR~~~~~~l~~l~~~-~-~~~-~~~~~-------l~~~l-~~-------------  291 (615)
                      +-..+ .+.+++.+. .++.  ++..|..++++|..+... . ++. ...+.       +++.+ ..             
T Consensus       227 ~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~  304 (1023)
T 4hat_C          227 PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA  304 (1023)
T ss_dssp             CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH
T ss_pred             CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh
Confidence            76533 335777777 6664  456899999999988752 2 221 11111       12211 10             


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhcccc----chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-------
Q psy14014        292 LLKDSEAEVRAAAANKVRDFCQNLDAY----NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-------  360 (615)
Q Consensus       292 ~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-------  360 (615)
                      ...+.+.+..+.-+..+..+++....-    ......+..++.++......+++.+=..+..-+..+.+.+-.       
T Consensus       305 ~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~  384 (1023)
T 4hat_C          305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHI  384 (1023)
T ss_dssp             HTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGG
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            012345565555555655555432211    010123333445666666777888866667766666653221       


Q ss_pred             -hhhhhhhHHHHHHhhcCCC---------hh-HH--------HHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhcccc
Q psy14014        361 -HNTVDHLLPLFLSQLKDEC---------PE-VR--------LNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGV  421 (615)
Q Consensus       361 -~~~~~~l~p~l~~~l~d~~---------~~-vr--------~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~  421 (615)
                       ..+..++++.+.+-+.-+.         .+ +|        ....+.            ++      +.+-.+..-.+.
T Consensus       385 ~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~------------~R------d~L~~l~~l~~~  446 (1023)
T 4hat_C          385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS------------ER------EVLVYLTHLNVI  446 (1023)
T ss_dssp             GHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHH------------HH------HHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHH------------HH------HHHHHHhccCHH
Confidence             1123345555554443211         00 00        000000            00      001111111111


Q ss_pred             chhhhhhhhHHHHHhhh--cCCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcC-----CcchHHHHHHHHHH
Q psy14014        422 EFFDEKLNALSIVELAE--DSKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLV-----DHVYAIREAATLNL  491 (615)
Q Consensus       422 ~~~~~~l~~~~i~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vR~~a~~~l  491 (615)
                      +.+. .+. +.+.+.+.  +.+|+.|++++.+++.++.....+   .+...++|.++.++.     |+...||.+++.++
T Consensus       447 ~~~~-~~~-~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l  524 (1023)
T 4hat_C          447 DTEE-IMI-SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVV  524 (1023)
T ss_dssp             HHHH-HHH-HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence            1100 010 23333333  368999999999999999877653   345677888888775     46677888999999


Q ss_pred             HHHHHHhChH-HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----------HHHhhHHHHHhhCCCCCch
Q psy14014        492 KKLVEQFGSE-WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----------TANFLLPTVLNMAGDNVAN  560 (615)
Q Consensus       492 ~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i~~~l~~~~~D~~~~  560 (615)
                      |.+.+-+... .+.+.+++.+...+.++++.+...|+.++..+++.|....          +.+.++..+.....+-.+.
T Consensus       525 Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~  604 (1023)
T 4hat_C          525 GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQ  604 (1023)
T ss_dssp             HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence            9988866321 1345577777788888899999999999999999887644          3444555555556666777


Q ss_pred             HHHHHHHHHHHHhHhhhh
Q psy14014        561 VRFNVAKTLQKIGPILET  578 (615)
Q Consensus       561 vr~~a~~~l~~l~~~~~~  578 (615)
                      -+..+..+++.+++..++
T Consensus       605 ~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          605 QVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             HHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            888999999999987763

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.43  E-value=6.5e-12  Score=117.86  Aligned_cols=228  Identities=14%  Similarity=0.135  Sum_probs=168.5

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014        366 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR  445 (615)
Q Consensus       366 ~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr  445 (615)
                      .-.|.+.+.+++++++++..|+.++..+... ..+.. ...     +            ..... |.+.+++++++..+|
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~-~~~-----~------------~~g~i-~~L~~lL~~~~~~v~   71 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQI-QAV-----I------------DAGAL-PALVQLLSSPNEQIL   71 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHH-HHH-----H------------HTTHH-HHHHHGGGCSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchH-HHH-----H------------HcCcH-HHHHHHHcCCCHHHH
Confidence            3467788888888889999999888655433 11111 111     0            00111 678888888889999


Q ss_pred             HHHHHHhHHHHhhhC---hHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhcCCC
Q psy14014        446 LAIIEYMPLLAGQLG---VEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSRDQN  519 (615)
Q Consensus       446 ~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~  519 (615)
                      ..++.++..++....   ........+|.+.+++.+++..+|..|+.+++.++......   ......+|.|.+++.+++
T Consensus        72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  151 (252)
T 4db8_A           72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN  151 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence            999999999975221   12223447899999999999999999999999997542211   122458999999999999


Q ss_pred             chHHHHHHHHHHHHHhhhChh---hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---hhHHhhHHHHHhhhc
Q psy14014        520 YLHRMTCLFCINVLAEACGPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKLN  593 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~l~  593 (615)
                      +.+|..++.++++++...+..   .....++|.|..++.++++.+|..++.+|++++...+.   ......+.+.+..++
T Consensus       152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  231 (252)
T 4db8_A          152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ  231 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence            999999999999998543221   12356899999999999999999999999999853321   223445777778888


Q ss_pred             CCCCccHHHHHHHHHHHHhh
Q psy14014        594 GDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       594 ~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+.+++||..|..++..+++
T Consensus       232 ~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          232 SHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             TCSSSHHHHTHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            89999999999999998764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.37  E-value=4.8e-10  Score=112.60  Aligned_cols=312  Identities=11%  Similarity=0.035  Sum_probs=206.1

Q ss_pred             hHhhhHHHHHHhhccC------------chhHHHHHHHHHHHHHhhcChhhHH---HhHH----------HHHHHhcCCC
Q psy14014        203 LKTDIIPMFVNLAQDE------------QDSVRLLAVEACVSIASLLSQSDVE---QLVM----------PTLRQCSGDT  257 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~------------~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~----------~~l~~~~~d~  257 (615)
                      .....+|.|.++++..            ++++|..|..++..++..-++....   ..++          +.+.+++..+
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            4567889999988853            2699999999999999887754211   1222          2333333322


Q ss_pred             C-----h--HHHH-------HHHHHHHHHHHHh--CccchhhhHHHHHHHhhc-----------CCcHHHHHHHHHHHHH
Q psy14014        258 S-----W--RVRY-------MVADKFTDLQKAV--GPEITKTDLVQAFQMLLK-----------DSEAEVRAAAANKVRD  310 (615)
Q Consensus       258 ~-----~--~vR~-------~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~  310 (615)
                      +     .  .+|.       .++.+|++++..-  ...+.....++.+..++.           +.++.++..|+.+|..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence            1     1  1554       7777777774321  011122356777777773           1357899999999999


Q ss_pred             HHhhccccchhHHH--HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc---chhhh-hhhHHHHHHhh-cCCChhHH
Q psy14014        311 FCQNLDAYNQENII--MTYILPYVKDLVADPNQHVKSALASVIMGLSPILG---KHNTV-DHLLPLFLSQL-KDECPEVR  383 (615)
Q Consensus       311 ~~~~~~~~~~~~~~--~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g---~~~~~-~~l~p~l~~~l-~d~~~~vr  383 (615)
                      ++..-  +.....+  ...++|.|.+++.+++..++..++++|..++..-+   +..+. ...+|.+++++ ...++.++
T Consensus       227 La~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          227 LTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HhCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            88642  2111122  24578999999999999999999999999875311   12222 24688899974 55678999


Q ss_pred             HHHHHhhhHhhhhhchhHHHHHHH-HHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCc----hHHHHHHHHhHHHHhh
Q psy14014        384 LNIISNLDCVNEVIGIQQWRVRLA-IIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKW----RVRLAIIEYMPLLAGQ  458 (615)
Q Consensus       384 ~~a~~~l~~l~~~~~~~~~~~~~~-i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~----~vr~~~~~~l~~l~~~  458 (615)
                      ..++.++..+......  .+.... ....+                  |.+.+++.+...    .++..++.+|..++..
T Consensus       305 ~~A~~aL~nLs~~~~~--nk~~I~~~~Gal------------------~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~  364 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTE--NKADICAVDGAL------------------AFLVGTLTYRSQTNTLAIIESGGGILRNVSSL  364 (458)
T ss_dssp             HHHHHHHHHHHHHCHH--HHHHHHHSTTHH------------------HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHH--HHHHHHHhcCcH------------------HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence            9998888777642211  111110 00112                  566777765433    4888888888888752


Q ss_pred             --hChH----hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH----HhhhchhHHHHhhhcCCCchHHHHHHH
Q psy14014        459 --LGVE----FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE----WAQSTVIPKVVAMSRDQNYLHRMTCLF  528 (615)
Q Consensus       459 --~~~~----~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~~R~~a~~  528 (615)
                        -+.+    ......+|.+..++.+.+..+++.|+.++..++.. +++    ......+|.|.+++.+++..+|..|+.
T Consensus       365 ~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~  443 (458)
T 3nmz_A          365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA  443 (458)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence              1222    12234688899999999999999999999999742 222    122347899999999999999999999


Q ss_pred             HHHHHHhhh
Q psy14014        529 CINVLAEAC  537 (615)
Q Consensus       529 ~l~~l~~~~  537 (615)
                      +|.++...-
T Consensus       444 AL~nL~~~~  452 (458)
T 3nmz_A          444 ALRNLMANR  452 (458)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHcCC
Confidence            999998654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.35  E-value=1.4e-13  Score=125.26  Aligned_cols=187  Identities=21%  Similarity=0.198  Sum_probs=136.5

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ  252 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  252 (615)
                      ..+++|+++.||..++..+.               ...+..+++|+++.||..+...+       +.        +.+..
T Consensus        56 ~~ll~d~~~~VR~~AA~~l~---------------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~  105 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA  105 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCCHHHHHHHHHhCC---------------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence            46779999999999988641               12357778999999999887643       22        34667


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHH
Q psy14014        253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYV  332 (615)
Q Consensus       253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  332 (615)
                      +++|++|.||..++..+       ..        +.+..+++|++++||..++..+       +.            +.+
T Consensus       106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~------------~~l  151 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP------------GRL  151 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG------------GGG
T ss_pred             HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH------------HHH
Confidence            88999999999988743       11        1355678999999999888742       11            234


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhh
Q psy14014        333 KDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM  412 (615)
Q Consensus       333 ~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l  412 (615)
                      ..+.+|+++.||..++..+       +.        +.+..+++|+++.||..++..+.                    .
T Consensus       152 ~~l~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~--------------------~  196 (244)
T 1lrv_A          152 FRFMRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR--------------------G  196 (244)
T ss_dssp             GGTTTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC--------------------G
T ss_pred             HHHHcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC--------------------H
Confidence            4678999999999988762       11        34556788999999999886531                    1


Q ss_pred             hhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q psy14014        413 PLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLK  492 (615)
Q Consensus       413 ~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~  492 (615)
                                        +.+..+++|++|.||..++..++               .+.+..+ +|+++.||.++...+|
T Consensus       197 ------------------~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          197 ------------------DDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             ------------------GGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             ------------------HHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                              34556788999999999999864               1344455 9999999999877654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.30  E-value=1.2e-10  Score=105.68  Aligned_cols=189  Identities=12%  Similarity=0.118  Sum_probs=144.3

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---  240 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---  240 (615)
                      ...+.+..+++++++.+|..++.+|+.++..-..   .......+|.+.++++++++.+|..|+.++..++..-+..   
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            3456778888999999999999999999853221   2334568999999999999999999999999987533221   


Q ss_pred             hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014        241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA  317 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  317 (615)
                      ......+|.+..+++++++.+|..++.+++.++......   ......+|.+.+++++.++++|..|+.+|..++..- +
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~  170 (210)
T 4db6_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N  170 (210)
T ss_dssp             HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-H
T ss_pred             HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-c
Confidence            122347899999999999999999999999987521111   123468999999999999999999999999998742 2


Q ss_pred             cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014        318 YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       318 ~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~  356 (615)
                      +.+........+|.+.+++.+.++.+|..++.+|..++.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            222223344577888888888888888888888887753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.28  E-value=1.3e-10  Score=105.62  Aligned_cols=183  Identities=13%  Similarity=0.117  Sum_probs=144.0

Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhh
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQ  504 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~  504 (615)
                      |.+..+++++++.+|..++..+..++..-..   .......+|.+.+++.+++..+|..|+.+++.++.....   ....
T Consensus        15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   94 (210)
T 4db6_A           15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID   94 (210)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            6778889999999999999999999743211   223345789999999999999999999999999742111   1122


Q ss_pred             hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh---hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---
Q psy14014        505 STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---  578 (615)
Q Consensus       505 ~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~---  578 (615)
                      ...+|.+.+++.++++.+|..+++++++++......   ......+|.|.+++.++++.+|..++.+|.+++...+.   
T Consensus        95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  174 (210)
T 4db6_A           95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ  174 (210)
T ss_dssp             TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence            448899999999999999999999999998532221   22456899999999999999999999999999865321   


Q ss_pred             hhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014        579 NVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       579 ~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      ........+.+..++.+++.+|++.|..+++.+++
T Consensus       175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            12344567777778889999999999999998875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.24  E-value=3.8e-09  Score=114.13  Aligned_cols=244  Identities=14%  Similarity=0.152  Sum_probs=187.0

Q ss_pred             hhHHhhhhhhccCCC--hhhHHH---HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC-ch
Q psy14014        147 TSACGLFSVCYPRVT--AGVKAE---LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QD  220 (615)
Q Consensus       147 ~~a~~~l~~~~~~~~--~~~~~~---l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~  220 (615)
                      ..|+..+..++...+  +.....   ++|.++..+.|....||.++..+...+++.+++... ..++|.+...+++. .|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw  148 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKW  148 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccch
Confidence            444455555553331  122222   346678888999999999999999999999988765 77889888888755 69


Q ss_pred             hHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcH
Q psy14014        221 SVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEA  298 (615)
Q Consensus       221 ~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  298 (615)
                      ..+..|+.++..+++..+..  ...+.++|.+.+++.|.-..|+.++..++..++..+++.. ...++|.+++.+.+++ 
T Consensus       149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~-  226 (986)
T 2iw3_A          149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPT-  226 (986)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChh-
Confidence            99999999999999887542  3467799999999999999999999999999999888764 4688999999999985 


Q ss_pred             HHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----hhhhhhhHHHHHHh
Q psy14014        299 EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----HNTVDHLLPLFLSQ  374 (615)
Q Consensus       299 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~~~~~~l~p~l~~~  374 (615)
                      +|-+ ++..|+..  .+..+- ....+..+.|.|.+.+++....+++.++-.+.++++.+..    ..+.+.++|.+.+.
T Consensus       227 ~~~~-~~~~l~~~--tfv~~v-~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~  302 (986)
T 2iw3_A          227 EVPE-TVHLLGAT--TFVAEV-TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN  302 (986)
T ss_dssp             HHHH-HHHHHTTC--CCCSCC-CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH
T ss_pred             hhHH-HHHHhhcC--eeEeee-cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH
Confidence            4433 34444421  111111 1245677899999999999999999999999999998775    34667788888876


Q ss_pred             hcC-CChhHHHHHHHhhhHhhhhh
Q psy14014        375 LKD-ECPEVRLNIISNLDCVNEVI  397 (615)
Q Consensus       375 l~d-~~~~vr~~a~~~l~~l~~~~  397 (615)
                      ... .+|++|..+-+++..+.+..
T Consensus       303 ~~~~~~pe~r~~~~~a~~~l~~~~  326 (986)
T 2iw3_A          303 FATIADPEAREVTLRALKTLRRVG  326 (986)
T ss_dssp             TTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHHHHHHhh
Confidence            654 67999999999888876554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.23  E-value=7.9e-09  Score=111.69  Aligned_cols=298  Identities=15%  Similarity=0.206  Sum_probs=208.4

Q ss_pred             hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcch-hhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCC----cchh
Q psy14014         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-TRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG----PEYV   88 (615)
Q Consensus        14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~   88 (615)
                      .+..+...+...+...|..+...+......-+... ....++..+...+.+...- ..++..++.+++..+.    +.|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccch
Confidence            34555566655455666677777776644221111 1123444555555554432 5566666666644322    3344


Q ss_pred             hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHH
Q psy14014         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (615)
Q Consensus        89 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l  168 (615)
                      -.++|.+.....|....||.+|..+...+...++++.. ..++|.+                                  
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~----------------------------------  138 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHL----------------------------------  138 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHH----------------------------------
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHH----------------------------------
Confidence            44567777777888888888888888888888877554 4444444                                  


Q ss_pred             HHHHHHHhCC-CChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014        169 RSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL  245 (615)
Q Consensus       169 ~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  245 (615)
                          ...+.+ .-|..+..++..+..+++..+.  ....++++|.+.+.+-|..++|.++|..++..++..+++.++. .
T Consensus       139 ----~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-~  213 (986)
T 2iw3_A          139 ----TNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-R  213 (986)
T ss_dssp             ----HHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-G
T ss_pred             ----HHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-h
Confidence                333333 3699999999999999987644  2346789999999999999999999999999999999987744 4


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHH-hCccc---hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchh
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKA-VGPEI---TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQE  321 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~-~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  321 (615)
                      .+|.+.+++.+|+.     .-+++..++.. |-.++   ...-+.|+|.+.|.+....+++.++-.++.+++.......-
T Consensus       214 ~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~  288 (986)
T 2iw3_A          214 FIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVI  288 (986)
T ss_dssp             GHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHH
Confidence            78889999998864     33444444421 11111   23468899999999999999999999999999988766656


Q ss_pred             HHHHHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchh
Q psy14014        322 NIIMTYILPYVKDLVA-DPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       322 ~~~~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~  357 (615)
                      ..+++.++|.+.+..+ -.+|.+|..+-.++..+...
T Consensus       289 ~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          289 APFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            6789999999988654 47899999888888777554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.22  E-value=8.5e-12  Score=113.49  Aligned_cols=184  Identities=22%  Similarity=0.261  Sum_probs=136.3

Q ss_pred             HhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhh
Q psy14014         21 ELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA   99 (615)
Q Consensus        21 ~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~   99 (615)
                      -+.++++.+|..+.+.+       ++        ..+..+++|+++ ||..++..|+.               +.+..++
T Consensus        58 ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~~---------------~~L~~ll  107 (244)
T 1lrv_A           58 YLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLPR---------------EQLSALM  107 (244)
T ss_dssp             GTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSCS---------------GGGGGTT
T ss_pred             HhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCCH---------------HHHHHHH
Confidence            35889999999999964       22        235667788775 99999865421               3567788


Q ss_pred             cCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCC
Q psy14014        100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD  179 (615)
Q Consensus       100 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~  179 (615)
                      .|+++.||..++..+       +.+        .+..+.+|++..+|..++.-++       .       +.+..+.+|+
T Consensus       108 ~D~d~~VR~~aA~~l-------~~~--------~L~~L~~D~d~~VR~~aA~~l~-------~-------~~l~~l~~D~  158 (244)
T 1lrv_A          108 FDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRIP-------P-------GRLFRFMRDE  158 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHSC-------G-------GGGGGTTTCS
T ss_pred             cCCCHHHHHHHHHhC-------CHH--------HHHHHHcCCCHHHHHHHHHhcC-------H-------HHHHHHHcCC
Confidence            999999999988743       322        3456678889999998887321       1       2345778999


Q ss_pred             ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCCh
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW  259 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~  259 (615)
                      ++.||..++..+       +.        +.+..+++|+++.||..++..+       +.        +.+..+++|++|
T Consensus       159 d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~  208 (244)
T 1lrv_A          159 DRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDW  208 (244)
T ss_dssp             CHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSH
T ss_pred             CHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCH
Confidence            999999998852       11        3455788999999999988753       22        456777899999


Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHH
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVR  309 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  309 (615)
                      .||..++..++               .+.+..+ +|+++.||.++..+|+
T Consensus       209 ~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          209 TVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             HHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             HHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            99999998754               2456666 9999999999987765

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.22  E-value=3.2e-08  Score=112.84  Aligned_cols=475  Identities=14%  Similarity=0.063  Sum_probs=256.8

Q ss_pred             chhhhhhhcCC--cHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhH
Q psy14014         53 LIPFLTETIYD--EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF  130 (615)
Q Consensus        53 ll~~l~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  130 (615)
                      +...+....+.  ++++|+.|.+.|..+-+.   ++.+..+...|.  ..+.+..+|..|...+.+.....         
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~---------   78 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---CPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFR---------   78 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHS---------
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---chHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHh---------
Confidence            44444444443  234777777777665431   223333332222  14456788888888887755321         


Q ss_pred             HHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhC-------CCChHHHHHHHHhHHHHHHHhchhhh
Q psy14014        131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVVEVDYL  203 (615)
Q Consensus       131 l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~  203 (615)
                                                +..++++.+..+...++.++.       +..+.||..++.++..+++.-.+ ..
T Consensus        79 --------------------------W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~  131 (1204)
T 3a6p_A           79 --------------------------WNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH  131 (1204)
T ss_dssp             --------------------------GGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT
T ss_pred             --------------------------cccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc
Confidence                                      011222323333333322221       24688999999999999887544 34


Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh------hh----------HHHhHHHHHHHhcCC-----------
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ------SD----------VEQLVMPTLRQCSGD-----------  256 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~----------~~~~l~~~l~~~~~d-----------  256 (615)
                      |+.+++.+.++++. +...+..++.+|..+++.+..      ..          ..+.+++.+.+++.+           
T Consensus       132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~  210 (1204)
T 3a6p_A          132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD  210 (1204)
T ss_dssp             CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            78888888888765 445677888888888764211      00          012344444444432           


Q ss_pred             --------CChHHHHHHHHHHHHHHHHhCccchh---hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        257 --------TSWRVRYMVADKFTDLQKAVGPEITK---TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       257 --------~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                              ++..++..+.+++.......+.....   ..+++.+..++.+  +++|..|+.+|..++..-.+......+.
T Consensus       211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li  288 (1204)
T 3a6p_A          211 TSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLM  288 (1204)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence                    12345666666666554443322211   2478887777764  5789999999999987432111000111


Q ss_pred             Hhh----HHHHHHhh--------CCCCHHHHHHHHHHHHhhchhhc----------chhhhhhhHHHHHHhhcCCChhHH
Q psy14014        326 TYI----LPYVKDLV--------ADPNQHVKSALASVIMGLSPILG----------KHNTVDHLLPLFLSQLKDECPEVR  383 (615)
Q Consensus       326 ~~l----~p~l~~~~--------~d~~~~vR~~~~~~l~~l~~~~g----------~~~~~~~l~p~l~~~l~d~~~~vr  383 (615)
                      ..+    +..+....        .+.+..+++.+++.+..++..+.          .......+++.+..+..+++..|-
T Consensus       289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs  368 (1204)
T 3a6p_A          289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR  368 (1204)
T ss_dssp             GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH
Confidence            111    11222222        23345666677666665543211          122345688999999998888888


Q ss_pred             HHHHHhhhHhhhhhc---hhHHHHHHHHHhhhhhh---hhccccchhhhhhhhHHHHHhh-h---------cCCchHHHH
Q psy14014        384 LNIISNLDCVNEVIG---IQQWRVRLAIIEYMPLL---AGQLGVEFFDEKLNALSIVELA-E---------DSKWRVRLA  447 (615)
Q Consensus       384 ~~a~~~l~~l~~~~~---~~~~~~~~~i~~~l~~l---~~~~~~~~~~~~l~~~~i~~~~-~---------~~~~~vr~~  447 (615)
                      ..++..+..+.+...   .+.+...  +...++.+   ..+++   |++.-..|. ..+. .         ..-|..|..
T Consensus       369 ~~~l~fW~~ll~~~~~~~~~~~~~~--l~~Ll~vl~~~l~k~~---yp~~~~~~~-~~~~~~D~d~~~E~~~~f~~~Rk~  442 (1204)
T 3a6p_A          369 SSTQMTWGALFRHEILSRDPLLLAI--IPKYLRASMTNLVKMG---FPSKTDSPS-CEYSRFDFDSDEDFNAFFNSSRAQ  442 (1204)
T ss_dssp             HHHHHHHHHHHSCTTTTTCHHHHHH--HHHHHHHHHHHHSCCC---CSSCCSSTH-HHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHHHHHHhc---CccccCCcc-hhhhhcccCCcHHHHHHHHHHHHH
Confidence            888888876665431   1111111  11223333   11221   111000000 0111 0         123567888


Q ss_pred             HHHHhHHHHhhhChHhHHHHHHHHHHHhcC-------------------------CcchHHHHHHHHHHHHHHHHhCh--
Q psy14014        448 IIEYMPLLAGQLGVEFFDEKLNALCMTWLV-------------------------DHVYAIREAATLNLKKLVEQFGS--  500 (615)
Q Consensus       448 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------------------------d~~~~vR~~a~~~l~~l~~~~~~--  500 (615)
                      ..+.+..++...+.. ..+.+.+.+...+.                         ++.+...++....+..++..+..  
T Consensus       443 ~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~  521 (1204)
T 3a6p_A          443 QGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL  521 (1204)
T ss_dssp             HHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888887777544322 22233333322221                         23455667777777777766511  


Q ss_pred             --HHhhhchhHHHHhhh---cCCCchHHHHHHHHHHHHHhhhCh-hhHHHhhHHHHHhhCCC------------CCchHH
Q psy14014        501 --EWAQSTVIPKVVAMS---RDQNYLHRMTCLFCINVLAEACGP-TVTANFLLPTVLNMAGD------------NVANVR  562 (615)
Q Consensus       501 --~~~~~~i~~~l~~~~---~d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~D------------~~~~vr  562 (615)
                        +.....+.|.+++++   +..+|.+|...+.+++.+.+.... ..+...++..+...+.+            .+.+||
T Consensus       522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr  601 (1204)
T 3a6p_A          522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVR  601 (1204)
T ss_dssp             CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHH
Confidence              101112456666643   345888999999999998877542 22334444544444434            344899


Q ss_pred             HHHHHHHHHHhHhhhh
Q psy14014        563 FNVAKTLQKIGPILET  578 (615)
Q Consensus       563 ~~a~~~l~~l~~~~~~  578 (615)
                      ..++.++..++..++.
T Consensus       602 ~~a~~al~~L~~~~~~  617 (1204)
T 3a6p_A          602 RHACSSIIKMCRDYPQ  617 (1204)
T ss_dssp             HHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHhhH
Confidence            9999999999987753

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.21  E-value=1.1e-06  Score=97.34  Aligned_cols=330  Identities=13%  Similarity=0.156  Sum_probs=181.6

Q ss_pred             HHhHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCC-----cHHHHHHHHHHHHHHH
Q psy14014        243 EQLVMPTLRQCSG--DTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDS-----EAEVRAAAANKVRDFC  312 (615)
Q Consensus       243 ~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~~~  312 (615)
                      ...+.+.+.+.++  ..+|..+.+++.++|.++..+..+   .....+++.+..+.+.+     .+-++...+..++++.
T Consensus       475 ~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~  554 (1073)
T 3gjx_A          475 EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP  554 (1073)
T ss_dssp             HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH
Confidence            3334455544433  457999999999999998655532   22345666677666544     3456666678899888


Q ss_pred             hhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh----------hhhhhHHHHHHhhcCCChhH
Q psy14014        313 QNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN----------TVDHLLPLFLSQLKDECPEV  382 (615)
Q Consensus       313 ~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~----------~~~~l~p~l~~~l~d~~~~v  382 (615)
                      .++...   ..+++.++..+.+.+.+.++.|+.+|+.++..+++..+...          +.+.++..+.+...+=.+.-
T Consensus       555 ~wl~~h---~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~  631 (1073)
T 3gjx_A          555 RFLRAH---WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQ  631 (1073)
T ss_dssp             HHHHHC---HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHH
T ss_pred             HHHHhC---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHH
Confidence            876432   34678888888888999999999999999999987654321          22223322222222222333


Q ss_pred             HHHHHHhhhHhhhhhchh----------------HHH-------------------HHH-HHHhhhhhhhhccccchhhh
Q psy14014        383 RLNIISNLDCVNEVIGIQ----------------QWR-------------------VRL-AIIEYMPLLAGQLGVEFFDE  426 (615)
Q Consensus       383 r~~a~~~l~~l~~~~~~~----------------~~~-------------------~~~-~i~~~l~~l~~~~~~~~~~~  426 (615)
                      .....++++.++...+.+                .|.                   +.+ .+.++.+.++..+|..|...
T Consensus       632 ~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~  711 (1073)
T 3gjx_A          632 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQ  711 (1073)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHH
Confidence            333333333333222211                111                   111 33444455566677665432


Q ss_pred             hhh-hHHHHHh-------h-----h-----cCCch------HHHHHHHHhHHHHhhh-ChHhHHHHHHHHHHHhc-C---
Q psy14014        427 KLN-ALSIVEL-------A-----E-----DSKWR------VRLAIIEYMPLLAGQL-GVEFFDEKLNALCMTWL-V---  477 (615)
Q Consensus       427 ~l~-~~~i~~~-------~-----~-----~~~~~------vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l-~---  477 (615)
                      .-. -+.+.+.       .     .     .+.+.      +|..++..+....... ..+.+...++|.+++.+ .   
T Consensus       712 ~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~  791 (1073)
T 3gjx_A          712 LGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQ  791 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHh
Confidence            110 0111111       0     0     11122      3444445554443322 23344555666555542 2   


Q ss_pred             CcchHHHH-HHHHHHHHHHHHhChHH------hhhchhHHHHhhhc---CCCchHHHHHHHHHHHHHhhhChhhHH----
Q psy14014        478 DHVYAIRE-AATLNLKKLVEQFGSEW------AQSTVIPKVVAMSR---DQNYLHRMTCLFCINVLAEACGPTVTA----  543 (615)
Q Consensus       478 d~~~~vR~-~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~---d~~~~~R~~a~~~l~~l~~~~~~~~~~----  543 (615)
                      ...+..|+ ..+.++..+++.+|...      ..+.+...-+++++   +..|..|....+.+..+...+....+.    
T Consensus       792 ~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~  871 (1073)
T 3gjx_A          792 RNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPA  871 (1073)
T ss_dssp             HSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHH
T ss_pred             cCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHH
Confidence            11112222 23455555666665431      12233333345565   358899999999999988876554432    


Q ss_pred             --HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        544 --NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       544 --~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                        ..++..+.-..+...++|-..+.+.+..+...
T Consensus       872 ~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~  905 (1073)
T 3gjx_A          872 QFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN  905 (1073)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence              23445555567888999988888888777654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.17  E-value=1e-06  Score=97.42  Aligned_cols=139  Identities=9%  Similarity=-0.003  Sum_probs=98.0

Q ss_pred             CCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHHHHhChH-HhhhchhHH
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDH-----VYAIREAATLNLKKLVEQFGSE-WAQSTVIPK  510 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~  510 (615)
                      .+|..+++++.+++.++.....+   .+.+.+++.+..+...+     ...++.....++|+..+-+... .+.+.++..
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~  570 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK  570 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence            46999999999999998777642   35566777777665433     3445565667888777655322 144667888


Q ss_pred             HHhhhcCCCchHHHHHHHHHHHHHhhhChhh----------HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh
Q psy14014        511 VVAMSRDQNYLHRMTCLFCINVLAEACGPTV----------TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET  578 (615)
Q Consensus       511 l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~  578 (615)
                      +.....+.++.+...|+.++..+++.|+...          +.+.++..+.....+=.+.-......+++.++...++
T Consensus       571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~  648 (1073)
T 3gjx_A          571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD  648 (1073)
T ss_dssp             HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence            8888899999999999999999999887654          2233333334444555666667788888888877653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.16  E-value=4.7e-09  Score=102.17  Aligned_cols=255  Identities=11%  Similarity=0.025  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-----------CCCHHHHHHHHHHHHhhchhhc--chhh--hhh
Q psy14014        302 AAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-----------DPNQHVKSALASVIMGLSPILG--KHNT--VDH  366 (615)
Q Consensus       302 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-----------d~~~~vR~~~~~~l~~l~~~~g--~~~~--~~~  366 (615)
                      ..|+.+|..+...  ++.+........+|.|..++.           ..++.+|..++++|..++..-.  +..+  ...
T Consensus        50 ~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G  127 (354)
T 3nmw_A           50 CPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  127 (354)
T ss_dssp             HHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            3455555555542  232322233334555555442           1346889999999999975322  1122  234


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCchHH
Q psy14014        367 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKWRVR  445 (615)
Q Consensus       367 l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~~vr  445 (615)
                      .+|.|+++++.++++++..|+.+|..+..... +..+..+.-...+                  |.+.++ .++.+..++
T Consensus       128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~I------------------p~Lv~lL~~~~~~~~~  188 (354)
T 3nmw_A          128 CMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSV------------------KALMECALEVKKESTL  188 (354)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHH------------------HHHHHHHHHCCCHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCH------------------HHHHHHHhcCCCHHHH
Confidence            69999999999999999999999988754311 1111111000112                  566665 466778899


Q ss_pred             HHHHHHhHHHHhhh-C-h-HhH-HHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHh--ChHH----hhhchhHHH
Q psy14014        446 LAIIEYMPLLAGQL-G-V-EFF-DEKLNALCMTWLVDHVY----AIREAATLNLKKLVEQF--GSEW----AQSTVIPKV  511 (615)
Q Consensus       446 ~~~~~~l~~l~~~~-~-~-~~~-~~~l~~~l~~~l~d~~~----~vR~~a~~~l~~l~~~~--~~~~----~~~~i~~~l  511 (615)
                      +.++.++..++... + + ... ....+|.+.+++.+...    .+++.|..+|..++..+  +++.    .....+|.|
T Consensus       189 ~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~L  268 (354)
T 3nmw_A          189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  268 (354)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHH
Confidence            99999998887622 1 1 222 24578888898876543    58999999999998632  2221    113378999


Q ss_pred             HhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014        512 VAMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE  577 (615)
Q Consensus       512 ~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~  577 (615)
                      .+++.+++..++..|+.++.+++.....   .......+|.|..++.++++.+|..++.+|..+....+
T Consensus       269 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999732111   11235678999999999999999999999999987644

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.10  E-value=1.3e-08  Score=96.18  Aligned_cols=175  Identities=10%  Similarity=0.091  Sum_probs=134.8

Q ss_pred             HHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHH-hhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcC
Q psy14014        182 MVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVN-LAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSG  255 (615)
Q Consensus       182 ~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~  255 (615)
                      +-|..++..|..++.....  .......+|.+.. +++++++.+|..|+.+++.++..-+..   ......+|.|.++++
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            5677777788777764432  2233456788888 999999999999999999998754421   122347788888887


Q ss_pred             -CCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014        256 -DTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY  331 (615)
Q Consensus       256 -d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~  331 (615)
                       +++..+|..++.+|+.++.....   .+.....+|.+..++++.++.++..|+.+|..++.. .++.........++|.
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHH
Confidence             56889999999999998864322   122246889999999999999999999999999876 3333333445678999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        332 VKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       332 l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      |..++.+++..+|..++.+++.++..
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999999999999999865

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.08  E-value=1.7e-08  Score=95.37  Aligned_cols=182  Identities=9%  Similarity=0.059  Sum_probs=137.7

Q ss_pred             HHHHH-hhhcCCchHHHHHHHHhHHHHhhhC---hHhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh---HH
Q psy14014        431 LSIVE-LAEDSKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS---EW  502 (615)
Q Consensus       431 ~~i~~-~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~---~~  502 (615)
                      |.+.. ++++++..+|..++.+++.++..-.   ........+|.+++++. +++..+|..|+.+++.++....+   .+
T Consensus        84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~  163 (296)
T 1xqr_A           84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF  163 (296)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            56677 8889999999999999999986422   12233457888888887 45789999999999999875432   12


Q ss_pred             hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh-
Q psy14014        503 AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET-  578 (615)
Q Consensus       503 ~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~-  578 (615)
                      .....+|.|..+++++++.+|..++++++.++...+.   ......++|.|..++.++++.||..++.+|+.+....+. 
T Consensus       164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            2235889999999999999999999999999865221   123457889999999999999999999999999865321 


Q ss_pred             --------hhHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHh
Q psy14014        579 --------NVIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       579 --------~~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~  612 (615)
                              ..+...+.+..+.+. ++...++.++|...++.+-
T Consensus       244 ~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          244 VRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence                    123345556666665 4446899999998887763

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.04  E-value=1.6e-07  Score=77.54  Aligned_cols=214  Identities=16%  Similarity=0.163  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHh-hccCchhHHHHHHHHHHHHHhhcChhhHHH
Q psy14014        166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL-AQDEQDSVRLLAVEACVSIASLLSQSDVEQ  244 (615)
Q Consensus       166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  244 (615)
                      ++++..++.++.|.-|.|+++++..+..+++..+.-  ...++.-+..+ -+++.-..-.....+++.++..-|+  ...
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence            456777788899999999999999999998865532  22233333333 3455555555566777777765443  244


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014        245 LVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII  324 (615)
Q Consensus       245 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  324 (615)
                      .++|.+..-..-.+++.|......|+.++...+.-  ...+..-+..++.+++..=|..|+..++.+..+-.      .+
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~------~y  178 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF------KY  178 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH------HH
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc------cc
Confidence            57888877666668999999999999999864321  23344456678889998888888888887665422      35


Q ss_pred             HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        325 MTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       325 ~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      ...++|.+..++.|.+.-||.++.+++..++..-.+   .-.++...++-++|.++-|....-.+|+.+.
T Consensus       179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999875322   1223333445567888888888777777653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.04  E-value=2.7e-08  Score=96.79  Aligned_cols=222  Identities=13%  Similarity=0.098  Sum_probs=151.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhC-c-cch--hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        258 SWRVRYMVADKFTDLQKAVG-P-EIT--KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       258 ~~~vR~~~~~~l~~l~~~~~-~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +..+|..++.+|..++..-. . ...  ...++|.|.+++++.+++++..|+.+|..+...-..+.+........+|.|.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            45688888888888864211 0 111  2346999999999999999999999999987631122222233345788888


Q ss_pred             Hh-hCCCCHHHHHHHHHHHHhhchhh-c-chhh--hhhhHHHHHHhhcCCCh----hHHHHHHHhhhHhhhhh-chhHHH
Q psy14014        334 DL-VADPNQHVKSALASVIMGLSPIL-G-KHNT--VDHLLPLFLSQLKDECP----EVRLNIISNLDCVNEVI-GIQQWR  403 (615)
Q Consensus       334 ~~-~~d~~~~vR~~~~~~l~~l~~~~-g-~~~~--~~~l~p~l~~~l~d~~~----~vr~~a~~~l~~l~~~~-~~~~~~  403 (615)
                      ++ ....++.+++.++.++..++... + +..+  ....+|.+.+++.+.++    +++..+..+|..+...+ +.+..+
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 56778999999999999987622 1 2222  24678999999986543    58998888888776421 222222


Q ss_pred             HHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC--h-HhHHHHHHHHHHHhcCCcc
Q psy14014        404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG--V-EFFDEKLNALCMTWLVDHV  480 (615)
Q Consensus       404 ~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d~~  480 (615)
                      +.+.-...+                  |.+.+++++.+..++..++.++..++..-.  . .......+|.+.+++.+.+
T Consensus       257 ~~i~~~g~i------------------~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~  318 (354)
T 3nmw_A          257 QILRENNCL------------------QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH  318 (354)
T ss_dssp             HHHHTTTHH------------------HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred             HHHHHcCCH------------------HHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC
Confidence            221000012                  677888888888899999999988863211  1 1122346788888888888


Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy14014        481 YAIREAATLNLKKLVEQ  497 (615)
Q Consensus       481 ~~vR~~a~~~l~~l~~~  497 (615)
                      ..+|+.|..++..++..
T Consensus       319 ~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          319 KMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88899999988888875

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.04  E-value=1.4e-08  Score=92.69  Aligned_cols=135  Identities=15%  Similarity=0.139  Sum_probs=114.9

Q ss_pred             cCCchHHHHHHHHhHHHHhhhChH---h--H-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014        439 DSKWRVRLAIIEYMPLLAGQLGVE---F--F-DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV  512 (615)
Q Consensus       439 ~~~~~vr~~~~~~l~~l~~~~~~~---~--~-~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~  512 (615)
                      |.|..+-..+++.+..+...++..   +  + ...++|.+..-+.|+...||+.+-.++..+...+++.    .+.+.+.
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~  173 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLL  173 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHH
Confidence            788889999999998887766432   1  1 3678999999999999999999999999988876654    5778888


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhH---HHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh
Q psy14014        513 AMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLL---PTVLNMAGDNVANVRFNVAKTLQKIGPILETN  579 (615)
Q Consensus       513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~---~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~  579 (615)
                      +.+++.|+++|..++..++.+.+..|...  ...+   |.+.++++|+|.+||..|..++..+....|..
T Consensus       174 ~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          174 DALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            88999999999999999999999988762  4467   99999999999999999999999998877643

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.02  E-value=1.4e-08  Score=97.36  Aligned_cols=278  Identities=11%  Similarity=0.052  Sum_probs=112.2

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      +++.+.+++..++...|+.+.-.+..++.. ..+.  --....+.+=++|+++-+|..|+++++.+...        .+.
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--------~m~  137 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--------TML  137 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--------TTH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--------HHH
Confidence            344444445555555555555444444332 1111  12334445555566666666666666655431        134


Q ss_pred             HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHH
Q psy14014        326 TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVR  405 (615)
Q Consensus       326 ~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  405 (615)
                      +.+.+++.+.+.|.++.||.+|+-+...+.....  ...+.+++.+.+++.|+++.|..+|+..+..+.+.-+ ..    
T Consensus       138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-~a----  210 (355)
T 3tjz_B          138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-LA----  210 (355)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-HH----
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-HH----
Confidence            4555666666666666666666665555443211  1233455666666666677776666666655533110 00    


Q ss_pred             HHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCcch
Q psy14014        406 LAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDHVY  481 (615)
Q Consensus       406 ~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~  481 (615)
                        +...++                  .+.+. .- ..| .   -+..+..+. .++++   .....+++.+...+++.+.
T Consensus       211 --~~kLv~------------------~l~~~-~l~~~~-~---q~~llr~l~-~~~~~d~~~~~~~~~~~l~~~L~~~~~  264 (355)
T 3tjz_B          211 --VSKMIS------------------KFTRH-GLKSPF-A---YCMMIRVAS-RQLEDEDGSRDSPLFDFIESCLRNKHE  264 (355)
T ss_dssp             --HHHHHH------------------HHHSS-CCSCHH-H---HHHHHHHHT-CC-----------------CCCCCSSH
T ss_pred             --HHHHHH------------------HHhcC-CCcChH-H---HHHHHHHHH-HhccccchhhHHHHHHHHHHHHcCCCh
Confidence              000111                  10000 00 011 1   111121111 12211   1234677778888888899


Q ss_pred             HHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchH
Q psy14014        482 AIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANV  561 (615)
Q Consensus       482 ~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~v  561 (615)
                      .|--.|+.++..+.. .+.. ......+.+..++.++++.+|..++..+..+....+..  ....-..++.+++|++..+
T Consensus       265 aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI  340 (355)
T 3tjz_B          265 MVVYEAASAIVNLPG-CSAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSI  340 (355)
T ss_dssp             HHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------
T ss_pred             HHHHHHHHHHHhccC-CCHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhH
Confidence            998888888877654 2222 22334566777788888899999999999988654432  2345566788899999988


Q ss_pred             HHHHHHHHHH
Q psy14014        562 RFNVAKTLQK  571 (615)
Q Consensus       562 r~~a~~~l~~  571 (615)
                      +-.|..+|-.
T Consensus       341 ~t~Aittllk  350 (355)
T 3tjz_B          341 ATLAITTLLK  350 (355)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhh
Confidence            8877776643

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.02  E-value=1.1e-08  Score=98.10  Aligned_cols=291  Identities=15%  Similarity=0.046  Sum_probs=163.3

Q ss_pred             CChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014        160 VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  239 (615)
Q Consensus       160 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  239 (615)
                      +++.....++....++++.++...|+.+--.+..+++. +++ .. ...+.+.+=++|+++-+|..|+.++..+..    
T Consensus        61 f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----  133 (355)
T 3tjz_B           61 LGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----  133 (355)
T ss_dssp             CCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----
T ss_pred             CchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----
Confidence            34444556777778899999999999999999888775 223 22 566778888889999999999999887632    


Q ss_pred             hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014        240 SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN  319 (615)
Q Consensus       240 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  319 (615)
                      ....+.+.+.+.+.+.|.++.||++|+-+...+....++  ....+++.+.+++.|.++-|..+|+..+..+...-.   
T Consensus       134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---  208 (355)
T 3tjz_B          134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---  208 (355)
T ss_dssp             TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence            345677899999999999999999999998877654322  234678888899999999999999988888876310   


Q ss_pred             hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch
Q psy14014        320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI  399 (615)
Q Consensus       320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  399 (615)
                         .....+++.+.+. .-.++......+..+..++..- .......+.+.+.+++++.++.|...|++++..+.. .+.
T Consensus       209 ---~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~  282 (355)
T 3tjz_B          209 ---LAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSA  282 (355)
T ss_dssp             ---HHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred             ---HHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCH
Confidence               1233344443321 1123444444555544443311 012345678888899999999999999998876533 111


Q ss_pred             hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCc
Q psy14014        400 QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDH  479 (615)
Q Consensus       400 ~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  479 (615)
                      ....      ...                  ..+..++.+++..+|..++..+..+....+.-  ....-.-+.+++.|+
T Consensus       283 ~~~~------~a~------------------~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~  336 (355)
T 3tjz_B          283 KELA------PAV------------------SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDA  336 (355)
T ss_dssp             -----------CC------------------CTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred             HHHH------HHH------------------HHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCC
Confidence            1000      001                  34556677788889999999999887644332  122333466788999


Q ss_pred             chHHHHHHHHHHHHH
Q psy14014        480 VYAIREAATLNLKKL  494 (615)
Q Consensus       480 ~~~vR~~a~~~l~~l  494 (615)
                      +..++..|+.++-+-
T Consensus       337 n~sI~t~Aittllkt  351 (355)
T 3tjz_B          337 NRSIATLAITTLLKT  351 (355)
T ss_dssp             ---------------
T ss_pred             cHhHHHHHHHHhhhc
Confidence            999988888776443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.00  E-value=2.9e-07  Score=76.07  Aligned_cols=215  Identities=16%  Similarity=0.186  Sum_probs=148.9

Q ss_pred             hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCc
Q psy14014        364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKW  442 (615)
Q Consensus       364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~  442 (615)
                      -..++..+.+.+.|.-|.|+.+|+..+..+.+..++- ...-      +                  ..+..+ -++...
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-~epl------~------------------~kL~vm~~ksEaI   84 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-YEPM------L------------------KKLFSLLKKSEAI   84 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-HHHH------H------------------HHHHHHHHHCCSH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-HHHH------H------------------HHHHHHHhhcccC
Confidence            3457778888899988999999998888776654421 1100      0                  112222 234444


Q ss_pred             hHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchH
Q psy14014        443 RVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLH  522 (615)
Q Consensus       443 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~  522 (615)
                      ..-+.....++.++.. .++ ....++|.++.-..-.....|..-..+++.+... +++ ....+...+..++.+++...
T Consensus        85 pltqeIa~a~G~la~i-~Pe-~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~-l~~~v~rdi~smltskd~~D  160 (253)
T 2db0_A           85 PLTQEIAKAFGQMAKE-KPE-LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPM-LMASIVRDFMSMLSSKNRED  160 (253)
T ss_dssp             HHHHHHHHHHHHHHHH-CHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHH-HHHHHHHHHHHHTSCSSHHH
T ss_pred             chHHHHHHHHhHHHHh-CHH-HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChH-HHHHHHHHHHHHhcCCChHH
Confidence            4445666677766542 222 2345788888877666788888999999999876 333 22346667777888999888


Q ss_pred             HHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHH
Q psy14014        523 RMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKY  602 (615)
Q Consensus       523 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~  602 (615)
                      |..++..++.+++... . +..-.+|-+..++.|.+.-||..+..+|..+....+  .+...+...++++ +|.-..|..
T Consensus       161 kl~aLnFi~alGen~~-~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl~e~-~D~S~lv~~  235 (253)
T 2db0_A          161 KLTALNFIEAMGENSF-K-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRLEEL-NDTSSLVNK  235 (253)
T ss_dssp             HHHHHHHHHTCCTTTH-H-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHC-CCSCHHHHH
T ss_pred             HHHHHHHHHHHhccCc-c-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHh-cCcHHHHHH
Confidence            9999888888875421 2 234467888888999999999999999999876543  2445555666665 888899999


Q ss_pred             HHHHHHHHHh
Q psy14014        603 FAQEAISSIA  612 (615)
Q Consensus       603 ~a~~a~~~~~  612 (615)
                      ...++++.++
T Consensus       236 ~V~egL~rl~  245 (253)
T 2db0_A          236 TVKEGISRLL  245 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.93  E-value=2.6e-08  Score=94.38  Aligned_cols=145  Identities=16%  Similarity=0.073  Sum_probs=113.5

Q ss_pred             HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--------HHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHhChH
Q psy14014        431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--------FDEKLNALCMTW-LVDHVYAIREAATLNLKKLVEQFGSE  501 (615)
Q Consensus       431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~  501 (615)
                      +.+...+.|.|..+...+++++..++..+|...        +...++|.++.- +.|....+|..+..++..++...+..
T Consensus        58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~  137 (278)
T 4ffb_C           58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI  137 (278)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence            456677889999999999999999998765421        235577777754 88999999999999998887655432


Q ss_pred             HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh-----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014        502 WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV-----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       502 ~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~-----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~  576 (615)
                         ..++..+...+++.+|.+|..++.++..+...+|...     ....+++.+.+++.|++++||..+..++..+...+
T Consensus       138 ---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          138 ---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             ---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             ---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence               3466778888999999999999999999988876543     23456677788899999999999999999998877


Q ss_pred             hh
Q psy14014        577 ET  578 (615)
Q Consensus       577 ~~  578 (615)
                      |.
T Consensus       215 G~  216 (278)
T 4ffb_C          215 GN  216 (278)
T ss_dssp             --
T ss_pred             Cc
Confidence            63

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.93  E-value=1e-08  Score=99.99  Aligned_cols=255  Identities=13%  Similarity=0.090  Sum_probs=167.5

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHH
Q psy14014        168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM  247 (615)
Q Consensus       168 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  247 (615)
                      +.+.+..-+-|+.|++|..|+-+|.++.+..+......        -..+.+-.+|-.++-++..++.++++.       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq-------  239 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR-------  239 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence            55566666789999999999999999998876432111        011224456666666665555444332       


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHh
Q psy14014        248 PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY  327 (615)
Q Consensus       248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~  327 (615)
                               .-..||++++++||.+ ..++.+   ..++..+...+..+.|+||.+++-.|..+...+..       .+.
T Consensus       240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-------Ld~  299 (800)
T 3oc3_A          240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-------KDG  299 (800)
T ss_dssp             ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-------HHH
T ss_pred             ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-------HHH
Confidence                     2357999999999999 777665   34555555566888999999999999877222211       577


Q ss_pred             hHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCCh--hHHHHHHHhhhHhhhhhchhHHHHH
Q psy14014        328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECP--EVRLNIISNLDCVNEVIGIQQWRVR  405 (615)
Q Consensus       328 l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~  405 (615)
                      ++|.+...++|.+.+||..++.+|..++    .....+.++..+..+|.+-++  .--......|+.+...-..      
T Consensus       300 Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------  369 (800)
T 3oc3_A          300 LCRKLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------  369 (800)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------
Confidence            8888889999999999999999998887    223345566667666654211  1122222233333221100      


Q ss_pred             HHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHH-hcCCcchHHH
Q psy14014        406 LAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT-WLVDHVYAIR  484 (615)
Q Consensus       406 ~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vR  484 (615)
                                +.     -. ..+. |.+..+++++-..||.++++++..+.        ...++..+++ .+-+++.+++
T Consensus       370 ----------a~-----~d-p~LV-PRL~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl  424 (800)
T 3oc3_A          370 ----------LS-----IP-PERL-KDIFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIR  424 (800)
T ss_dssp             ----------CC-----CC-SGGG-GGTGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHH
T ss_pred             ----------cc-----cC-hHHH-HHHHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHH
Confidence                      00     00 0122 67777888999999999999987764        2345666655 5678889999


Q ss_pred             HHHHHHHH
Q psy14014        485 EAATLNLK  492 (615)
Q Consensus       485 ~~a~~~l~  492 (615)
                      ..+...+.
T Consensus       425 ~lS~~VWk  432 (800)
T 3oc3_A          425 EMAIKLLK  432 (800)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999885

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.92  E-value=2.4e-07  Score=84.48  Aligned_cols=136  Identities=11%  Similarity=0.092  Sum_probs=115.1

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhch------hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEV------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL  250 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  250 (615)
                      .|.++.|-..+++.+..+...+..      +.....++|.+.+-+.|..+.||..+...+..+....++.    .+++.+
T Consensus        97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l  172 (266)
T 2of3_A           97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPML  172 (266)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHH
Confidence            478999999999999888766543      2224678999999999999999999999998888776654    377778


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHH---HHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLV---QAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       251 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                      .+.+.+.+|++|..++..++.+...+|..  ....+   |.+.+++.|.+.+||.+|+.++..+....+..
T Consensus       173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          173 LDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            88889999999999999999999999876  35677   99999999999999999999999988876543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.92  E-value=4e-06  Score=95.63  Aligned_cols=446  Identities=9%  Similarity=0.001  Sum_probs=250.2

Q ss_pred             ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCC-----c-----------chh
Q psy14014         25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG-----P-----------EYV   88 (615)
Q Consensus        25 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~-----~-----------~~~   88 (615)
                      +++.+|......+..+++.-.++ .|+.+++.+.++++.+...+..+...|..+.+.+..     .           +..
T Consensus       108 ~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~  186 (1204)
T 3a6p_A          108 EENHIKDALSRIVVEMIKREWPQ-HWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNM  186 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence            46789999999999999987675 789999999888766544555555555555431100     0           112


Q ss_pred             hhchHHHhhhhcC-------------------chhHHHHHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcCCCcchh
Q psy14014         89 HCLLPPLESLATV-------------------EETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSR  146 (615)
Q Consensus        89 ~~l~~~l~~l~~~-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~~~~~~r  146 (615)
                      +.+++.+.+++.+                   ++..++..+++++.....+.+...+.+   .+++.+..+..+  ...|
T Consensus       187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr  264 (1204)
T 3a6p_A          187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQ  264 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHH
Confidence            2444444444332                   234577888888888888877655433   388888877664  4678


Q ss_pred             hhHHhhhhhhccCCC-hhhH--------HHHHHHHHHHh--------CCCChHHHHHHHHhHHHHHHHhch---------
Q psy14014        147 TSACGLFSVCYPRVT-AGVK--------AELRSHFRNLC--------QDDTPMVRRAAAGKLGELAKVVEV---------  200 (615)
Q Consensus       147 ~~a~~~l~~~~~~~~-~~~~--------~~l~~~l~~l~--------~d~~~~vR~~a~~~l~~l~~~~~~---------  200 (615)
                      ..|+.++..++..-. ....        ...+..+....        .+.+.++++..++.+..++.....         
T Consensus       265 ~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~  344 (1204)
T 3a6p_A          265 LGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVE  344 (1204)
T ss_dssp             HHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            889988888776432 2111        11111222222        233567888888888777643321         


Q ss_pred             -hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcC--h-h---hHHHhHHHHHHH---hc---C------------
Q psy14014        201 -DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS--Q-S---DVEQLVMPTLRQ---CS---G------------  255 (615)
Q Consensus       201 -~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~l~~~l~~---~~---~------------  255 (615)
                       ......+++.+..++.+++..|...++..|..+.+...  . +   .+.+.+++.+..   -.   .            
T Consensus       345 ~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~  424 (1204)
T 3a6p_A          345 TPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRF  424 (1204)
T ss_dssp             CCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhc
Confidence             12245788999999999999999999999998877642  2 1   233345555511   11   1            


Q ss_pred             --CC-------ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC-------------------------CcHHHH
Q psy14014        256 --DT-------SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD-------------------------SEAEVR  301 (615)
Q Consensus       256 --d~-------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-------------------------~~~~vr  301 (615)
                        |.       -+..|+.....+..++...+.. ....+.+.+...+.+                         +.+...
T Consensus       425 D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  503 (1204)
T 3a6p_A          425 DFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW  503 (1204)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence              00       0356777777776666544321 122333444333322                         112234


Q ss_pred             HHHHHHHHHHHhhccc----cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHHhhc
Q psy14014        302 AAAANKVRDFCQNLDA----YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLK  376 (615)
Q Consensus       302 ~~a~~~l~~~~~~~~~----~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~~l~  376 (615)
                      ++....++.++..+..    +.....+.+.+++.+..+ +..++.+|...+..++.+...+.. ..+.+.++..+...+.
T Consensus       504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~  582 (1204)
T 3a6p_A          504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVT  582 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhc
Confidence            4445555555544311    100011233344432221 446889999999999888887653 3344455555555554


Q ss_pred             C------------CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCC---
Q psy14014        377 D------------ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSK---  441 (615)
Q Consensus       377 d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~---  441 (615)
                      +            .+.+||..|..++..+.+..+..     +  ..+++.+.              ..+...+....   
T Consensus       583 ~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-----L--~p~~~~i~--------------~~~~~~l~~~~~l~  641 (1204)
T 3a6p_A          583 FETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-----V--LPNFDMLY--------------NHVKQLLSNELLLT  641 (1204)
T ss_dssp             CCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-----H--GGGHHHHH--------------HHHHHHHHSTTTSC
T ss_pred             cCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-----H--HHHHHHHH--------------HHHHHHHhCccccc
Confidence            4            23478999999888877654321     1  11121111              22333333222   


Q ss_pred             chHHHHHHHHhHHHHhhhChHh----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC
Q psy14014        442 WRVRLAIIEYMPLLAGQLGVEF----FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG  499 (615)
Q Consensus       442 ~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  499 (615)
                      ..-+....+++..++..+++..    +...+++.+.+...++.+.  . ++.....++..+|
T Consensus       642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~--~-~~s~~~~f~~~~G  700 (1204)
T 3a6p_A          642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMH--R-VLSDVDAFIAYVG  700 (1204)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHH--H-HHHCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHH--H-hhcCHHHHHHHhC
Confidence            3445566777777766655432    2345566666656554432  2 3444444555554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.90  E-value=9e-07  Score=76.76  Aligned_cols=183  Identities=16%  Similarity=0.111  Sum_probs=152.0

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhH
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDV  242 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~  242 (615)
                      +.+..+..++.|.++.++..++.++..+.+..+.   ......++|-+..+++++++.|.-.|+.++..+.+..+- +..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            3566778888999999999999999999998643   334678999999999999999999999999999998874 334


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      ...+...+.....+++.-.+..+++.+|.+-    .-.....+...+..+++..+++++.+|+.++..++......    
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklk----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~----  184 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQ----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS----  184 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC----
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcCC----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH----
Confidence            5668888999999999999999999999982    11124578899999999999999999999999998865432    


Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      .+++.++.-+..+++.+++.++.-++.++..+...
T Consensus       185 ~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          185 GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            23566777788899999999999999998887654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.4e-07  Score=89.37  Aligned_cols=186  Identities=16%  Similarity=0.102  Sum_probs=141.3

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhh-------hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-----
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDY-------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-----  240 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-----  240 (615)
                      ..-+.+.+|..|..+.+.+..+........       ....+.+.+...++|.+..|...+++++..++...+..     
T Consensus        15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~   94 (278)
T 4ffb_C           15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNA   94 (278)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred             HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            456789999999999999888776543221       13346677888889999999999999999999877643     


Q ss_pred             ---hHHHhHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014        241 ---DVEQLVMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       241 ---~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  316 (615)
                         .....++|.+.+ ++.|+...+|..+..++..++.....   ...+++.+...+++.+|.+|..++..|..++..++
T Consensus        95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg  171 (278)
T 4ffb_C           95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG  171 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence               123446666654 58899999999999988887764332   24677888889999999999999999999998776


Q ss_pred             ccch-hHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch
Q psy14014        317 AYNQ-ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       317 ~~~~-~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      .... .......+++.+..+++|.++.||.++...+..+-..+|..
T Consensus       172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            4422 12346678888999999999999999999999998888853

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.87  E-value=4.4e-08  Score=86.03  Aligned_cols=139  Identities=20%  Similarity=0.250  Sum_probs=113.3

Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCccchh
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEITK  282 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~  282 (615)
                      .+.+++++..+.+++..+||..|+..++.. .      ..+.+++.+.. +..|++|+||+.++..++.++...+.    
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----  137 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----  137 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence            567899999999999999999999987766 2      13558888887 88999999999999999999875443    


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      +..++.+...++|++..||..|+..+-.++.. +..   ..-.+.++|.+..+..|++..||.+++++|..+++.
T Consensus       138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            34778899999999999999999887544432 111   122466899999999999999999999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.84  E-value=6.5e-10  Score=92.02  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=75.0

Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhh
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD  284 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  284 (615)
                      ..-.+.+..+++|+++.+|..|+.+++.+.    ..    . ++.+.+.++|+++.||..++.+++.+..        ..
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----DE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCS----ST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence            344556666777777777777777665432    11    1 3666677777788888887777776542        34


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy14014        285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG  353 (615)
Q Consensus       285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~  353 (615)
                      .++.+...++|+++.||..|+.+|+.+..            +..+|.|.+.++|+++.||..++.+|+.
T Consensus        74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            56777777778888888888888776642            2355666677777777777777777654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.84  E-value=9.8e-07  Score=76.53  Aligned_cols=225  Identities=10%  Similarity=0.051  Sum_probs=168.7

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014        366 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR  445 (615)
Q Consensus       366 ~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr  445 (615)
                      ..+..+.+++.|+++.|+..++.++..+.+..... .+... +-+.+                  |.+.+++++++.++-
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-l~~~~-~e~~L------------------d~iI~llk~~dEkva   92 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSD-LRMMV-LERHL------------------DVFINALSQENEKVT   92 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-HHHHH-HHHHH------------------HHHHHTCCSTTHHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-ccHHH-HHHHH------------------HHHHHHHhccchhHH
Confidence            35678889999999999999999999988765322 11111 11112                  678888899999999


Q ss_pred             HHHHHHhHHHHhhhCh-HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHH
Q psy14014        446 LAIIEYMPLLAGQLGV-EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRM  524 (615)
Q Consensus       446 ~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~  524 (615)
                      -.|++++..+...... +..+..+...+.+....++...+..++..++.+ +...   ....+...+..++.++++.++.
T Consensus        93 l~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~  168 (265)
T 3b2a_A           93 IKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKV  168 (265)
T ss_dssp             HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHH
Confidence            9999999999876543 223456778888899999999999999999998 2222   2345777888888999999999


Q ss_pred             HHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh---HHhhHHHHHhhhc-CCCCccH
Q psy14014        525 TCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV---IQSQVKPALDKLN-GDTDVDV  600 (615)
Q Consensus       525 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~l~-~d~d~~v  600 (615)
                      .++.++.+++...+.......++.-+..+++.+|+.++..|..++..+.+.-=...   -.-.+...+.+|. -..-+.+
T Consensus       169 agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~  248 (265)
T 3b2a_A          169 AGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPII  248 (265)
T ss_dssp             HHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHH
T ss_pred             HHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhH
Confidence            99999999997766555556666667778888899999999999999986411111   1234556667776 7788899


Q ss_pred             HHHHHHHHHHHhhc
Q psy14014        601 KYFAQEAISSIADS  614 (615)
Q Consensus       601 ~~~a~~a~~~~~~~  614 (615)
                      |..|......+.+.
T Consensus       249 ~~ka~~v~~~le~~  262 (265)
T 3b2a_A          249 RLKAKKVSDLIDSV  262 (265)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99998877766553

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.82  E-value=7e-10  Score=91.82  Aligned_cols=121  Identities=14%  Similarity=0.125  Sum_probs=91.9

Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014        243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN  322 (615)
Q Consensus       243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  322 (615)
                      .+.-.+.+...++|+++.+|..++..|+.+..        .. ++.+..+++|+++.||..|+.+|+.+..         
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--------EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD---------   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS--------TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--------hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence            34456778888999999999999988876532        12 4889999999999999999999987653         


Q ss_pred             HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                         +..+|.+.+.++|+++.||..++++|+.+..        +..+|.+.+.++|+++.||..|+.+|+.
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               2357778888899999999999999998752        2467889999999999999999998864

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.80  E-value=1.4e-07  Score=82.78  Aligned_cols=138  Identities=18%  Similarity=0.165  Sum_probs=110.4

Q ss_pred             hhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHH-HhCCCChHHHHHHHHhHHHHHHHhchhhhHhh
Q psy14014        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN-LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTD  206 (615)
Q Consensus       128 ~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  206 (615)
                      +.++++...+..++...+|..|+.+++.. .     ....+++.+.. +..|++|.||..++.+++.++...+++    .
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~  139 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----K  139 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----T
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----H
Confidence            45678888888888889999999888877 3     12567788887 888999999999999999999755443    3


Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA  275 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~  275 (615)
                      .++.+...++|++..||+.|++.+...+...........++|.+..+..|+++.||++++..|..+++.
T Consensus       140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            778899999999999999999886543332222233445899999999999999999999999998864

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.79  E-value=4.6e-07  Score=88.65  Aligned_cols=253  Identities=12%  Similarity=0.078  Sum_probs=165.6

Q ss_pred             chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhc-cCCChhhHHHHH
Q psy14014         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCY-PRVTAGVKAELR  169 (615)
Q Consensus        91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~l~  169 (615)
                      +...|..-+-++..++|+.|+-+|+.+.+..+...-..           +.  ..+..++++++.++ .++         
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~--~N~DLAvRLLCVLALDRF---------  232 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IR--VDSKLFSKIYEILVTDKF---------  232 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CC--CCTTHHHHHHHHHHHBCC---------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------cc--ccHHHHHHHHHHHHhccc---------
Confidence            66666666678899999999999999998876411000           00  01133444443332 111         


Q ss_pred             HHHHHHhCC-CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHH
Q psy14014        170 SHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP  248 (615)
Q Consensus       170 ~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  248 (615)
                         -....| ..-.||..|+++||.+ .+.+++   ..++-.+...+..+.|+||..++-.+..+...+..   .+.++|
T Consensus       233 ---GDYVSDqVVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~  302 (800)
T 3oc3_A          233 ---NDFVDDRTVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCR  302 (800)
T ss_dssp             ---BBCSSSSCBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHH
T ss_pred             ---cccccCeeeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHH
Confidence               112233 2457999999999999 777765   34444444555778899999999888877444432   577889


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc--HHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE--AEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      .+...+.|++..||..++.+|..++   .. ...+.++..+...+.+.+  ..--...+..|..++..-.....    .+
T Consensus       303 aVL~GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~----dp  374 (800)
T 3oc3_A          303 KLVSLLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI----PP  374 (800)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC----CS
T ss_pred             HHHhhcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc----Ch
Confidence            9999999999999999999988877   22 224566666666665432  11122334445555543211111    13


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHH-HHHhhcCCChhHHHHHHHhhh
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL-FLSQLKDECPEVRLNIISNLD  391 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~-l~~~l~d~~~~vr~~a~~~l~  391 (615)
                      .++|.|...+.+.-..||.++++++..+.        ...+++. +.+.+-+++++|+..+.+.+.
T Consensus       375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGGGTGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            67788888899999999999999998776        1234444 455667889999998888774

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.43  E-value=2.3e-05  Score=86.10  Aligned_cols=388  Identities=10%  Similarity=0.032  Sum_probs=202.5

Q ss_pred             cCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch------hhhHhhhHHHHHHhhc-cCchhHHHHHHHHH
Q psy14014        158 PRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV------DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEAC  230 (615)
Q Consensus       158 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l  230 (615)
                      ...++...+.+.+.+..++.|.+..-...+++.++.+......      +..+..+.|.+...+. +-.++....=..++
T Consensus       499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i  578 (997)
T 1vsy_5          499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA  578 (997)
T ss_dssp             TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            3445555677888888899999988999999999998764322      3467889999999888 45544333212222


Q ss_pred             HHHHhhcChhhHHHhHHHHHHHh----c-C-CCCh--HHHHHHHHH-HHHHHHHhCccchhhhHHHHHHHhhcCCcHHHH
Q psy14014        231 VSIASLLSQSDVEQLVMPTLRQC----S-G-DTSW--RVRYMVADK-FTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVR  301 (615)
Q Consensus       231 ~~l~~~~~~~~~~~~l~~~l~~~----~-~-d~~~--~vR~~~~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  301 (615)
                      ..+....++.. ...++..+..+    . . +.++  ..|...+.. +..+...++.   ...++..+.  +.++...||
T Consensus       579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~---~~~~l~~~~--l~h~y~~VR  652 (997)
T 1vsy_5          579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD---VGKLFDELV--FDHPYDQVR  652 (997)
T ss_dssp             HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC---CHHHHHHCC--SCCSCHHHH
T ss_pred             HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHH--hCCChHHHH
Confidence            22222222221 22344433221    0 1 1111  122222222 1222222221   234454444  778889999


Q ss_pred             HHHHHHHHHHHhhccccch--hHHHH----------------------H---hhHHHHHHhhC---C--C-----CHHH-
Q psy14014        302 AAAANKVRDFCQNLDAYNQ--ENIIM----------------------T---YILPYVKDLVA---D--P-----NQHV-  343 (615)
Q Consensus       302 ~~a~~~l~~~~~~~~~~~~--~~~~~----------------------~---~l~p~l~~~~~---d--~-----~~~v-  343 (615)
                      +.....|..+....-....  .+.+.                      +   .++..+...-.   +  +     +... 
T Consensus       653 e~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~  732 (997)
T 1vsy_5          653 QAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFY  732 (997)
T ss_dssp             HHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHH
T ss_pred             HHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHH
Confidence            9988888777765411100  00000                      0   01111110000   0  1     1111 


Q ss_pred             -HHHHHHHHHhhchhhcch---hhhh-hhHHHHHHhhcCCCh-hHHHH-HHHhhhHhhhhhchhHHHHHHHHHhhhhhhh
Q psy14014        344 -KSALASVIMGLSPILGKH---NTVD-HLLPLFLSQLKDECP-EVRLN-IISNLDCVNEVIGIQQWRVRLAIIEYMPLLA  416 (615)
Q Consensus       344 -R~~~~~~l~~l~~~~g~~---~~~~-~l~p~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~  416 (615)
                       -.+++..+..........   .+.. .++|.+.++.++++. +.... +..++..+....-                  
T Consensus       733 ~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~------------------  794 (997)
T 1vsy_5          733 RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI------------------  794 (997)
T ss_dssp             HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC------------------
T ss_pred             HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC------------------
Confidence             123333332222111100   1111 144444444443322 22222 2122221111100                  


Q ss_pred             hccccchhhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhh----hChHhHHHHHHHHHHHhcCCcc-hHHHHHHHHH
Q psy14014        417 GQLGVEFFDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQ----LGVEFFDEKLNALCMTWLVDHV-YAIREAATLN  490 (615)
Q Consensus       417 ~~~~~~~~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vR~~a~~~  490 (615)
                         ..+..++.+  ..+.+... +++| .|..++..+..+.-.    ++.+. ...+...+..+|.|+. .+||+.|..+
T Consensus       795 ---~~~~~~~~l--~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~t  867 (997)
T 1vsy_5          795 ---RKNHVAAIV--DYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASI  867 (997)
T ss_dssp             ---CHHHHHHHH--HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHH
T ss_pred             ---CHHHHHHHH--HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence               000000001  12223333 6799 999999998777531    23332 3567888889999999 9999999999


Q ss_pred             HHHHHHHhChHHhhhchhHHHHhhhcC------------CCchHHHHHHHHHHHHHhhhChh----hHHHhhHHHHHhhC
Q psy14014        491 LKKLVEQFGSEWAQSTVIPKVVAMSRD------------QNYLHRMTCLFCINVLAEACGPT----VTANFLLPTVLNMA  554 (615)
Q Consensus       491 l~~l~~~~~~~~~~~~i~~~l~~~~~d------------~~~~~R~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~  554 (615)
                      |+.++...+.......++..+.+.+..            .+...|.+++-+|+.+....+.+    .+.+.++..|.+..
T Consensus       868 Lsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~  947 (997)
T 1vsy_5          868 LSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWA  947 (997)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTS
T ss_pred             HHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHh
Confidence            999986542422222344444443311            12257788999999999876544    35667777777788


Q ss_pred             CCCCchHHHHHHHHHHHHhHhhh
Q psy14014        555 GDNVANVRFNVAKTLQKIGPILE  577 (615)
Q Consensus       555 ~D~~~~vr~~a~~~l~~l~~~~~  577 (615)
                      .|+.+ |+..+-++++.+.....
T Consensus       948 ~~~~~-i~~tvk~tlseFkrTH~  969 (997)
T 1vsy_5          948 RTSGM-TGNAAKNTISEFKKVRA  969 (997)
T ss_dssp             SSCSS-HHHHTHHHHHHHHHHTS
T ss_pred             CCCCc-hHHHHHHHHHHHHhccc
Confidence            88766 99999999999876543

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.33  E-value=0.00066  Score=74.74  Aligned_cols=552  Identities=12%  Similarity=0.013  Sum_probs=276.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcC----CcH-HHHHHHHHHhc--cccCCC-CCcc
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY----DED-EVLLALAEQLG--TFTPNV-GGPE   86 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~----~~~-~vr~~a~~~l~--~l~~~~-~~~~   86 (615)
                      +..+++-.-|.=+++|..|-..|......+..  .+..++|.+.+.++    +.+ +..+.+...|.  ++...+ .+..
T Consensus       135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g--s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~  212 (997)
T 1vsy_5          135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG--SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK  212 (997)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT--HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence            55555666688888999999999999876643  45556666555443    222 44444444433  222211 2345


Q ss_pred             hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh-------------------H------------------Hhh-
Q psy14014         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH-------------------D------------------LEA-  128 (615)
Q Consensus        87 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-------------------~------------------~~~-  128 (615)
                      +...+++.|......+++.|+..+-.+...+.......                   .                  ... 
T Consensus       213 ~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~  292 (997)
T 1vsy_5          213 DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSL  292 (997)
T ss_dssp             HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777777777777776666655555432110                   0                  000 


Q ss_pred             --hHHHHHHHhh-cCCC--cchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhh-
Q psy14014        129 --HFVPLVQRLA-SGDW--FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-  202 (615)
Q Consensus       129 --~~l~~l~~l~-~~~~--~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-  202 (615)
                        .+...+...+ .+..  +.....++.++-.+..+.......+++..+.+.+.|+.+.+|+.+..++..+........ 
T Consensus       293 ~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~  372 (997)
T 1vsy_5          293 LVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSD  372 (997)
T ss_dssp             HHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence              1222222332 2335  666666666644444444444456677788888899999999999999987776532100 


Q ss_pred             -----------------------hHhhhHHHHHHh---------hccCc--h-------------------hHHHHHHHH
Q psy14014        203 -----------------------LKTDIIPMFVNL---------AQDEQ--D-------------------SVRLLAVEA  229 (615)
Q Consensus       203 -----------------------~~~~ll~~l~~~---------~~d~~--~-------------------~vr~~a~~~  229 (615)
                                             ..+.....+.+-         .-|..  +                   +....-..+
T Consensus       373 ~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~i  452 (997)
T 1vsy_5          373 YEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELEV  452 (997)
T ss_dssp             HTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHHH
T ss_pred             CCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHHH
Confidence                                   000111111111         11111  0                   001111112


Q ss_pred             HHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHH----HHhCccchhhhHHHHHHHhhcCCcHHHHHHHH
Q psy14014        230 CVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQ----KAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA  305 (615)
Q Consensus       230 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~----~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  305 (615)
                      +..+++.+. ..+...++.++.+- ++.+..-+..-+..+..+.    ..+|. ...+.+.|.+..++.|.+..-+.+|+
T Consensus       453 ~~~f~~~~~-~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~~-~~l~~l~~~~e~L~~~~dk~~qr~aa  529 (997)
T 1vsy_5          453 LKTAGHLLT-REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFCE-LNMSDLFELCESYYNKDDKASMIMSV  529 (997)
T ss_dssp             HHHHHTTCC-HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTCC-CCGGGHHHHHHHTCCSSCHHHHHHHH
T ss_pred             HHHHHhhcC-HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccch-hhHHHHHHHHHHHhccccHHHHHHHH
Confidence            333443344 34455555554432 1111111222233333333    34453 44678999999999999888888999


Q ss_pred             HHHHHHHhhcccc--chhHHHHHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchh---------------------hcch
Q psy14014        306 NKVRDFCQNLDAY--NQENIIMTYILPYVKDLVA-DPNQHVKSALASVIMGLSPI---------------------LGKH  361 (615)
Q Consensus       306 ~~l~~~~~~~~~~--~~~~~~~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~---------------------~g~~  361 (615)
                      ..+++++......  ...+...+-+.|.+.+.+. +-+++....-..++..+...                     .+.+
T Consensus       530 Ei~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~  609 (997)
T 1vsy_5          530 EIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESD  609 (997)
T ss_dssp             HHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSS
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCC
Confidence            9999988753321  1223466778888888877 44443332221111111110                     0000


Q ss_pred             h---------h-----------hhhhHHHHHHh-hcCCChhHHHHHHHhhhHhhhhhc---hhHHHHHHHHHhhhhhhhh
Q psy14014        362 N---------T-----------VDHLLPLFLSQ-LKDECPEVRLNIISNLDCVNEVIG---IQQWRVRLAIIEYMPLLAG  417 (615)
Q Consensus       362 ~---------~-----------~~~l~p~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~i~~~l~~l~~  417 (615)
                      .         +           .....+.+..+ +.++...||+...+.|..+....-   .......+.  ...+. .+
T Consensus       610 ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~--~~~~~-~~  686 (997)
T 1vsy_5          610 AATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLE--AERND-PD  686 (997)
T ss_dssp             CCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHH--HHHSC-SS
T ss_pred             cHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH--hhccc-cc
Confidence            0         0           00111222222 456678899988888876654320   011110000  00000 00


Q ss_pred             ccc------cchhhhhhhh--HHHHHhhh---c--CCchHHHHHH----HHhHHHHhhhChHh---HH----HHHHHHHH
Q psy14014        418 QLG------VEFFDEKLNA--LSIVELAE---D--SKWRVRLAII----EYMPLLAGQLGVEF---FD----EKLNALCM  473 (615)
Q Consensus       418 ~~~------~~~~~~~l~~--~~i~~~~~---~--~~~~vr~~~~----~~l~~l~~~~~~~~---~~----~~l~~~l~  473 (615)
                      .++      ...+.+.+..  ..+..+..   .  +....+....    ..+.-+...++...   +.    +.++|.++
T Consensus       687 ~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll  766 (997)
T 1vsy_5          687 GLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLI  766 (997)
T ss_dssp             SSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTC
T ss_pred             cccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHH
Confidence            001      1111111110  01111111   1  1111111121    12222223333221   11    11444444


Q ss_pred             HhcCCcch-HHHHH-HHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCCchHHHHHHHHHHHHHhh----hChhhHHHhh
Q psy14014        474 TWLVDHVY-AIREA-ATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQNYLHRMTCLFCINVLAEA----CGPTVTANFL  546 (615)
Q Consensus       474 ~~l~d~~~-~vR~~-a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~----~~~~~~~~~i  546 (615)
                      .+..+++. ++... |..++..++...-+....+.++..+.+..+ +++| .|..++..+..+.-.    ++.+. ...+
T Consensus       767 ~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i  844 (997)
T 1vsy_5          767 GLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKI  844 (997)
T ss_dssp             TTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHT
T ss_pred             HHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHH
Confidence            44444443 44444 555555554322112223345566655555 6799 999998877666542    22222 2578


Q ss_pred             HHHHHhhCCCCC-chHHHHHHHHHHHHhHhh
Q psy14014        547 LPTVLNMAGDNV-ANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       547 ~~~l~~~~~D~~-~~vr~~a~~~l~~l~~~~  576 (615)
                      ...+..++.|+. .+||..|+.+|+.++...
T Consensus       845 ~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~  875 (997)
T 1vsy_5          845 LEFVVSNLYNEQFVEVRVRAASILSDIVHNW  875 (997)
T ss_dssp             HHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence            899999999999 999999999999998654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.11  E-value=0.0027  Score=64.98  Aligned_cols=326  Identities=15%  Similarity=0.200  Sum_probs=179.2

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhc-c-CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-D-EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL  250 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  250 (615)
                      -++....-.+=|+.|+..|..+++....+. ...-+|.+...++ | ++.++-+.++++|..+...-+.+.-.. .    
T Consensus        28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~-~----  101 (651)
T 3grl_A           28 DRVASSTLLDDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE-N----  101 (651)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------------
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc-c----
Confidence            344445566779999999999987665443 3334555555544 4 345566667777765433222111000 0    


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH-HHhhH
Q psy14014        251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII-MTYIL  329 (615)
Q Consensus       251 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~  329 (615)
                         .......+....++.   +.       ...+-++.++.+++..+..+|..+++.|..++..-+...++... .+.-+
T Consensus       102 ---~~~~~~~~~~~~~d~---f~-------~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi  168 (651)
T 3grl_A          102 ---STRQSEDLGSQFTEI---FI-------KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGV  168 (651)
T ss_dssp             ---------CHHHHHHHH---HH-------HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHH
T ss_pred             ---ccccchHHHHHHHHH---HH-------cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccH
Confidence               000000011111111   11       12467888999999999999999999999999875543332222 23567


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hh--hhhhhHHHHHHhhcCCCh----hHHHHHHHhhhHhhhhhchh--
Q psy14014        330 PYVKDLVADPNQHVKSALASVIMGLSPILGK-HN--TVDHLLPLFLSQLKDECP----EVRLNIISNLDCVNEVIGIQ--  400 (615)
Q Consensus       330 p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~--~~~~l~p~l~~~l~d~~~----~vr~~a~~~l~~l~~~~~~~--  400 (615)
                      |.|..++.|....+|..++..|..++..-.. +.  ..+...+.+...++.+..    .|...++..+..+.+.....  
T Consensus       169 ~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~  248 (651)
T 3grl_A          169 SRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN  248 (651)
T ss_dssp             HHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence            8899999999999999999999888763211 11  123456777777765433    57777777777776543211  


Q ss_pred             HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHH-----HHHHHhHHHHhhhCh---------HhHHH
Q psy14014        401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRL-----AIIEYMPLLAGQLGV---------EFFDE  466 (615)
Q Consensus       401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~-----~~~~~l~~l~~~~~~---------~~~~~  466 (615)
                      -+++    ..++|.+..-+..+              -....|.-+.     .++..+..+...-++         .+...
T Consensus       249 ~FrE----t~~i~~L~~LL~~~--------------~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~  310 (651)
T 3grl_A          249 FFKE----GSYIQRMKPWFEVG--------------DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC  310 (651)
T ss_dssp             HHHH----TTCGGGGGGGGCCC--------------SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHH----cCCHHHHHHHhCCC--------------ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC
Confidence            1111    11343333211100              0112454221     122233333221111         11233


Q ss_pred             HHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHhCh--HHhh----------hchhHHHHhhhcCC-CchHHHHHHHHHH
Q psy14014        467 KLNALCMTWLVDH--VYAIREAATLNLKKLVEQFGS--EWAQ----------STVIPKVVAMSRDQ-NYLHRMTCLFCIN  531 (615)
Q Consensus       467 ~l~~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~--~~~~----------~~i~~~l~~~~~d~-~~~~R~~a~~~l~  531 (615)
                      .+++.+.+++..+  ...+|..|+.+++.++.....  +.+.          ..++..+..+.++. ....|.+++.|+.
T Consensus       311 g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~  390 (651)
T 3grl_A          311 GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ  390 (651)
T ss_dssp             THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            4566677765443  567999999999998764321  1111          11333344555554 5678999999999


Q ss_pred             HHHh
Q psy14014        532 VLAE  535 (615)
Q Consensus       532 ~l~~  535 (615)
                      ....
T Consensus       391 ay~~  394 (651)
T 3grl_A          391 CFLY  394 (651)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8864

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.06  E-value=0.0038  Score=60.87  Aligned_cols=184  Identities=20%  Similarity=0.133  Sum_probs=107.0

Q ss_pred             ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCCh
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW  259 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~  259 (615)
                      +...++.+++.+..+.+.++.-  ...-+..+..++.|++..||..|+..|..+|..    ...+.+..+|.+++...+.
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            5777777777777777776642  345566677777788777888877777777655    3466677777777776666


Q ss_pred             HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCC
Q psy14014        260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADP  339 (615)
Q Consensus       260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~  339 (615)
                      .-+..+-++|..+...-+    ...+-..+.+... .+..+|+.+++.|..-+..++.+.........+...+.+.++|.
T Consensus       115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence            655555555555554211    1233334444444 35688888888887766666554333334444555666667665


Q ss_pred             CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhh
Q psy14014        340 NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL  375 (615)
Q Consensus       340 ~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l  375 (615)
                      ...-=..+...|..+ +..+...-.+.+++.+.+..
T Consensus       190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa  224 (507)
T 3u0r_A          190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQA  224 (507)
T ss_dssp             CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHH
Confidence            543323333333222 11121112345666666653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.95  E-value=0.0043  Score=63.51  Aligned_cols=228  Identities=14%  Similarity=0.120  Sum_probs=137.8

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014        366 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR  445 (615)
Q Consensus       366 ~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr  445 (615)
                      .-++.++.+++..+..+|..+++.|..+...-+...|..-+   .      ...|         .+.+..+++|+...+|
T Consensus       122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il---~------~p~g---------i~~Lv~lL~d~rE~iR  183 (651)
T 3grl_A          122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIIL---V------SPMG---------VSRLMDLLADSREVIR  183 (651)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH---H------STTH---------HHHHHGGGGCSSHHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHH---h------Cccc---------HHHHHHHHhCchHHHH
Confidence            45788999999999999999999999887665443332211   0      0011         1688899999999999


Q ss_pred             HHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHh--ChHHhhh-chhHHHHhhh
Q psy14014        446 LAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVY----AIREAATLNLKKLVEQF--GSEWAQS-TVIPKVVAMS  515 (615)
Q Consensus       446 ~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vR~~a~~~l~~l~~~~--~~~~~~~-~i~~~l~~~~  515 (615)
                      ..++..+..+++.-..   -...+..++.+++.+..+..    .|-.-++.++..+++.-  +...+.+ ..+|.|..++
T Consensus       184 neallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL  263 (651)
T 3grl_A          184 NDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF  263 (651)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence            9999999998763211   11123456777777655433    56666777788887653  2233332 3677777766


Q ss_pred             cCC----Cch--HHHH---HHHHHHHHHhhhCh---------hhHHHhhHHHHHhhCC-CC-CchHHHHHHHHHHHHhHh
Q psy14014        516 RDQ----NYL--HRMT---CLFCINVLAEACGP---------TVTANFLLPTVLNMAG-DN-VANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       516 ~d~----~~~--~R~~---a~~~l~~l~~~~~~---------~~~~~~i~~~l~~~~~-D~-~~~vr~~a~~~l~~l~~~  575 (615)
                      ..+    .|.  .-.+   ++.++.-+....++         ..+...+++.+.+++. +. ...+|..+..+++.++..
T Consensus       264 ~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg  343 (651)
T 3grl_A          264 EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG  343 (651)
T ss_dssp             CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence            533    222  1122   33344444332221         1123456677777654 33 446889999999988754


Q ss_pred             hhh--hhH----------HhhHHHHHhhhcCC-CCccHHHHHHHHHHHH
Q psy14014        576 LET--NVI----------QSQVKPALDKLNGD-TDVDVKYFAQEAISSI  611 (615)
Q Consensus       576 ~~~--~~~----------~~~~~~~l~~l~~d-~d~~v~~~a~~a~~~~  611 (615)
                      .+.  ..+          .+.+..++..+.++ +..++|..|..+++.+
T Consensus       344 N~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay  392 (651)
T 3grl_A          344 CQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF  392 (651)
T ss_dssp             CHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            321  111          13344444444444 4588899998888765

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.86  E-value=0.00069  Score=60.92  Aligned_cols=186  Identities=12%  Similarity=0.089  Sum_probs=120.7

Q ss_pred             HHHHHHhCCCCh--HHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---h
Q psy14014        170 SHFRNLCQDDTP--MVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---D  241 (615)
Q Consensus       170 ~~l~~l~~d~~~--~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~  241 (615)
                      |.+.++++++++  .++..++..+..++..-++   .......+|.+.++++.+++.++..|..+|..++..-+..   .
T Consensus        11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I   90 (233)
T 3tt9_A           11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV   90 (233)
T ss_dssp             HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            455677777776  8888888888888754322   2334567899999999999999999999999998642221   1


Q ss_pred             HHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc-chhhhHHHHHHHhhc-------C---------CcHHHHHH
Q psy14014        242 VEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE-ITKTDLVQAFQMLLK-------D---------SEAEVRAA  303 (615)
Q Consensus       242 ~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~-------d---------~~~~vr~~  303 (615)
                      .....+|.+.+++. .+++.+++.++.+|..++..-... ......+|.+.+++.       +         .+++|+..
T Consensus        91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~n  170 (233)
T 3tt9_A           91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN  170 (233)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHH
T ss_pred             HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHH
Confidence            12347888988887 578999999999998887532211 112234566655431       1         36789999


Q ss_pred             HHHHHHHHHhhccccchhH-----HHHHhhHHHHHHhhC--CCCHHHHHHHHHHHHhhch
Q psy14014        304 AANKVRDFCQNLDAYNQEN-----IIMTYILPYVKDLVA--DPNQHVKSALASVIMGLSP  356 (615)
Q Consensus       304 a~~~l~~~~~~~~~~~~~~-----~~~~~l~p~l~~~~~--d~~~~vR~~~~~~l~~l~~  356 (615)
                      |..+|..+... +++.+..     -..+.++.++.....  +.+.+.+..++.+|.+++.
T Consensus       171 a~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          171 VTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            99999887653 1122211     123333444443332  2355677777777777654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.83  E-value=0.045  Score=58.46  Aligned_cols=203  Identities=10%  Similarity=0.047  Sum_probs=107.9

Q ss_pred             hccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchh------hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcC
Q psy14014         50 RGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYV------HCLLPPLESLATVEETVVRDKAVESLRLISAQHS  122 (615)
Q Consensus        50 ~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~  122 (615)
                      ...++|++..+ ++.+ ..|..++.+|..+++   ++...      ..+.+++..++.|++..||..|+.+|++++..-+
T Consensus        33 ~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           33 EDKILPVLKDL-KSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             hhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            46789998775 5555 599999999999885   32221      1234567888999999999999999999998877


Q ss_pred             hhHHhhh----HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh
Q psy14014        123 PHDLEAH----FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV  198 (615)
Q Consensus       123 ~~~~~~~----~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~  198 (615)
                      .+.....    ++|.+..+......     ................+..+.            .+-..++..+..++..-
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~lL~~L~e~s  171 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVLE-----TLTTSEPPFSKLLKAQQRLVW------------DITGSLLVLIGLLALAR  171 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHH-----HHHCBTTBGGGSCHHHHHHHH------------HHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHcChHHHHHHHHHhhHH-----HHhhhccccccccHHHHHHHH------------HHHHHHHHHHHHHHhCC
Confidence            6555442    55555444321100     000000001111111111111            12222334444444322


Q ss_pred             ch---hhhHhhhHHHHHHhhcc---CchhHHHHHHHHHHHHHhhcChh--hH----HHhHHHHHHHhcCCCChHHHHHHH
Q psy14014        199 EV---DYLKTDIIPMFVNLAQD---EQDSVRLLAVEACVSIASLLSQS--DV----EQLVMPTLRQCSGDTSWRVRYMVA  266 (615)
Q Consensus       199 ~~---~~~~~~ll~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~~--~~----~~~l~~~l~~~~~d~~~~vR~~~~  266 (615)
                      ..   .......+|.+...+.+   ....++..|.++|..+.+....-  .+    ...++..+....++.+. .|..++
T Consensus       172 ~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~  250 (684)
T 4gmo_A          172 DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMAC  250 (684)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHH
Confidence            21   11123455555555432   23579999999999887754321  00    11244444444444333 244555


Q ss_pred             HHHHHHHH
Q psy14014        267 DKFTDLQK  274 (615)
Q Consensus       267 ~~l~~l~~  274 (615)
                      ..+.++..
T Consensus       251 giL~Ni~~  258 (684)
T 4gmo_A          251 GVLHNVFT  258 (684)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhHhh
Confidence            55555543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.76  E-value=0.036  Score=54.14  Aligned_cols=261  Identities=13%  Similarity=0.119  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChH
Q psy14014        103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM  182 (615)
Q Consensus       103 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~  182 (615)
                      ....+..|.+-+.++.+++|.  +.+.-+..+..++.|++..+|..|++-++.+|..   +....+...+.++++..++.
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~  115 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSA  115 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHH
T ss_pred             CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchH
Confidence            478888888888888888864  4455566777788888888999999999888876   44777888889999998988


Q ss_pred             HHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHhcCCCC
Q psy14014        183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS----DVEQLVMPTLRQCSGDTS  258 (615)
Q Consensus       183 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~  258 (615)
                      .+..+-.+|..+.+.-+.    ..+-.+|.++.+ .++.+|+.++..+..-...++.+    .....+...+.+.+.|-+
T Consensus       116 E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT  190 (507)
T 3u0r_A          116 EFNLVNNALLSIFKMDAK----GTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT  190 (507)
T ss_dssp             HHHHHHHHHHHHHHHCHH----HHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHhcChH----HHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence            888888888888775432    334455555554 46789999998887655555543    344557777778887765


Q ss_pred             hHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc------CCcHHHHHHHHHHHHHHHhhc----cccchhHHHHHhh
Q psy14014        259 WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK------DSEAEVRAAAANKVRDFCQNL----DAYNQENIIMTYI  328 (615)
Q Consensus       259 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~~l  328 (615)
                      ..==..+...|..+ ..++.-....++++.+.....      -.+++.-..-+.++..-+..+    +....-.++...+
T Consensus       191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI  269 (507)
T 3u0r_A          191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV  269 (507)
T ss_dssp             HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence            32112222222111 111111112456665554321      123333333333333333332    2222224556677


Q ss_pred             HHHHHHhhCC-CCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHh
Q psy14014        329 LPYVKDLVAD-PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ  374 (615)
Q Consensus       329 ~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~  374 (615)
                      +|.+..+-.. +....|-..++.+..++...|........+|.+.+.
T Consensus       270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~  316 (507)
T 3u0r_A          270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDK  316 (507)
T ss_dssp             GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHH
T ss_pred             ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHH
Confidence            7766554332 223366678888888888877433333344444433

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.74  E-value=0.00047  Score=62.04  Aligned_cols=145  Identities=12%  Similarity=0.048  Sum_probs=92.9

Q ss_pred             HHHHHHhcCCcch--HHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---h
Q psy14014        469 NALCMTWLVDHVY--AIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---T  540 (615)
Q Consensus       469 ~~~l~~~l~d~~~--~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~  540 (615)
                      +|.+.++|..++.  .++..|+.++..++..-.+.   ......+|.|.+++.++++.+|..|+++|.+++...+.   .
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5667777776666  77777878887777542211   11223678888888888888888888888888753211   1


Q ss_pred             hHHHhhHHHHHhhCC-CCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhc------CC---------CCccHHH
Q psy14014        541 VTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLN------GD---------TDVDVKY  602 (615)
Q Consensus       541 ~~~~~i~~~l~~~~~-D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~------~d---------~d~~v~~  602 (615)
                      ......+|.|.+++. .++.+++..++.+|..+...-..+  .....+.+++..+.      .|         .|.+|++
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            123457788888876 467888888888888886433211  22222333333221      11         3668888


Q ss_pred             HHHHHHHHHhh
Q psy14014        603 FAQEAISSIAD  613 (615)
Q Consensus       603 ~a~~a~~~~~~  613 (615)
                      +|.-++..++.
T Consensus       170 na~~~L~nLss  180 (233)
T 3tt9_A          170 NVTGCLRNMSS  180 (233)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            88888888764

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.32  E-value=0.12  Score=49.70  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=73.3

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN  362 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~  362 (615)
                      +.++..+...-...+ +.+...+..+.+++.+-.+     .+++.++|.+..+..|++..||+.++..|...+..  ...
T Consensus        25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~e   96 (386)
T 3o2t_A           25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIE   96 (386)
T ss_dssp             HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGG
T ss_pred             HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHH
Confidence            345555544433333 3466666666665443222     25678899999999999999999999988877652  334


Q ss_pred             hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014        363 TVDHLLPLFLSQLKDECPEVRLNIISNLDCVN  394 (615)
Q Consensus       363 ~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~  394 (615)
                      +...+++.+..+++|+++.|...++.+.+.+.
T Consensus        97 l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A           97 LLLKLIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            45678888999999999999999998877654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.88  E-value=0.067  Score=60.01  Aligned_cols=158  Identities=14%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             CCchHHHHHHHHhHHHHhhhCh------HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLGV------EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA  513 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  513 (615)
                      .++.+|..++-+++.++..+..      ....+.+...+.+.+...+..-+..++.+||++..        ...++.+..
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~  478 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR  478 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence            4566888888888888764421      11234455555666666667778888888888742        235666666


Q ss_pred             hhcC-------CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHH
Q psy14014        514 MSRD-------QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVK  586 (615)
Q Consensus       514 ~~~d-------~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  586 (615)
                      ++..       ...++|..|+.+|..+... .+..+.+.+++.+.+  .+.+++||..|+..|-...+.      ...+.
T Consensus       479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm~t~P~------~~~l~  549 (1056)
T 1lsh_A          479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESKPS------VALVS  549 (1056)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTCCC------HHHHH
T ss_pred             hhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHCcC------HHHHH
Confidence            5431       2346788899999998743 233344445554443  567889999999888654321      23456


Q ss_pred             HHHhhhcCCCCccHHHHHHHHHHHHhhc
Q psy14014        587 PALDKLNGDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       587 ~~l~~l~~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      .+...+..|++.+|+.+....++.+++|
T Consensus       550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          550 MVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            6666677888899999988888888765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.72  E-value=0.17  Score=56.70  Aligned_cols=128  Identities=9%  Similarity=0.016  Sum_probs=83.8

Q ss_pred             HHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCcc------chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014        246 VMPTLRQCSGD----TSWRVRYMVADKFTDLQKAVGPE------ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       246 l~~~l~~~~~d----~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  315 (615)
                      ++..+..++++    .++.+|..+..+++.+...+..+      .....+...+.+.+...+.+-+..++++|+.+..  
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--  469 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--  469 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence            44455555554    46779999999999988755322      1123455556666667777778889999998765  


Q ss_pred             cccchhHHHHHhhHHHHHHhhC-------CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc--CCChhHHHHH
Q psy14014        316 DAYNQENIIMTYILPYVKDLVA-------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK--DECPEVRLNI  386 (615)
Q Consensus       316 ~~~~~~~~~~~~l~p~l~~~~~-------d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~--d~~~~vr~~a  386 (615)
                                +..++.+.+++.       +...++|.+|+.+|..++....     ..+.+.+.+.+.  .++.+||..|
T Consensus       470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA  534 (1056)
T 1lsh_A          470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRS  534 (1056)
T ss_dssp             ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred             ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHH
Confidence                      223444444442       2346899999999988874211     134556666663  4678999999


Q ss_pred             HHhh
Q psy14014        387 ISNL  390 (615)
Q Consensus       387 ~~~l  390 (615)
                      +..|
T Consensus       535 ~~~L  538 (1056)
T 1lsh_A          535 CIVF  538 (1056)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.68  E-value=0.18  Score=45.70  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=86.1

Q ss_pred             ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014        161 TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  240 (615)
Q Consensus       161 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  240 (615)
                      .+...+++++.+..+..|++.++|+.+++.+.+.++.  +.......++.+..+++|+++.|.+.++.+...+       
T Consensus        47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i-------  117 (257)
T 3gs3_A           47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI-------  117 (257)
T ss_dssp             TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH-------
T ss_pred             CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------
Confidence            3455677788888888899999999999999988854  2345667888888899999999999999888764       


Q ss_pred             hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014        241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  315 (615)
                        ++.++..+.   .++...  ...-++...+          ..+-..+.......+..||..+++.+..++...
T Consensus       118 --Y~~~l~~i~---~~~~~~--~~~~~~W~~m----------~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q  175 (257)
T 3gs3_A          118 --YKNGLQYLC---SLMEPG--DSAEQAWNIL----------SLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ  175 (257)
T ss_dssp             --HHHHHHHHT---TSSSCC--HHHHHHHHHH----------HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHh---cCCCCc--chHHHHHHHH----------HHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence              333444433   222100  0001111121          123333455567778899999999998877543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.24  E-value=0.66  Score=42.02  Aligned_cols=143  Identities=15%  Similarity=0.102  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHH
Q psy14014        222 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVR  301 (615)
Q Consensus       222 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  301 (615)
                      .|-..+.....++-.-.+ ...+.+++.+..+..|++..+|+.++..+...+..  +.......++.+..+++|+++.|.
T Consensus        31 ~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~  107 (257)
T 3gs3_A           31 TKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI  107 (257)
T ss_dssp             HHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence            454444444444433222 35667777777777888888888888888777643  222345778888888999999998


Q ss_pred             HHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChh
Q psy14014        302 AAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPE  381 (615)
Q Consensus       302 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~  381 (615)
                      +.++.+...+...             ++.   .++++++..-.  .-..+..          ...+...+.......+..
T Consensus       108 K~~I~~~~~iY~~-------------~l~---~i~~~~~~~~~--~~~~W~~----------m~~lK~~Il~~~~s~n~g  159 (257)
T 3gs3_A          108 KRVIQACGSIYKN-------------GLQ---YLCSLMEPGDS--AEQAWNI----------LSLIKAQILDMIDNENDG  159 (257)
T ss_dssp             HHHHHHHHHHHHH-------------HHH---HHTTSSSCCHH--HHHHHHH----------HHHHHHHHHHGGGSSCHH
T ss_pred             HHHHHHHHHHHHH-------------HHH---HHhcCCCCcch--HHHHHHH----------HHHHHHHHHHHHccCCcc
Confidence            8888887765442             111   22222221000  0001111          112334555666777889


Q ss_pred             HHHHHHHhhhHhhh
Q psy14014        382 VRLNIISNLDCVNE  395 (615)
Q Consensus       382 vr~~a~~~l~~l~~  395 (615)
                      ||..+++.+..++.
T Consensus       160 vkl~~iKF~e~vIl  173 (257)
T 3gs3_A          160 IRTNAIKFLEGVVV  173 (257)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999998877654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.19  E-value=0.17  Score=48.80  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=84.6

Q ss_pred             hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh
Q psy14014        162 AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  241 (615)
Q Consensus       162 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  241 (615)
                      +....++++.++.+..|++.+||+.+++.+.+.++.  ........++.+..+++|+++.|.+.++.+...+        
T Consensus        58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl--------  127 (386)
T 3o2t_A           58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQL--------  127 (386)
T ss_dssp             GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------
Confidence            344566777788888899999999999999888864  2233567888888888999999999988888765        


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  315 (615)
                       ++.++..+...-.+..| + .   .++..+          ..+-..+...+...+..||..+++.+..++...
T Consensus       128 -Ypl~f~~i~~~~~~~~~-~-e---~~W~~m----------~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q  185 (386)
T 3o2t_A          128 -YKVALQWMVKSRVISEL-Q-E---ACWDMV----------SAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL  185 (386)
T ss_dssp             -HHHHHHHHHHC-CCCHH-H-H---HHHHHH----------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHhcCCCcchh-H-H---HHHHHH----------HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence             44455554432222111 0 0   111111          122333445566778899999999999887644

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=96.13  E-value=0.0097  Score=63.60  Aligned_cols=74  Identities=15%  Similarity=0.115  Sum_probs=45.9

Q ss_pred             hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH--HHh-HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q psy14014        203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV--EQL-VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG  277 (615)
Q Consensus       203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~-l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~  277 (615)
                      ....++|++.. ++++++..|..|..++..+++.-.....  ... +.+.+..++.|++..||..++.+|.+++...|
T Consensus        32 ~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           32 REDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             chhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            35667777654 5777888888888888877643221111  112 33445666777777777777777777765544

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=95.63  E-value=0.38  Score=41.27  Aligned_cols=90  Identities=10%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             HhHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCC--CchHHHHHHHHHHHHH
Q psy14014        462 EFFDEKLNALCMTWLVDH---VYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLA  534 (615)
Q Consensus       462 ~~~~~~l~~~l~~~l~d~---~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~  534 (615)
                      +.+...++|.++..+-.+   ...+|+.|+..++.+++.+|..  .....+..++.+.+.|+  +...+..|+.++..+ 
T Consensus        82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l-  160 (196)
T 4atg_A           82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL-  160 (196)
T ss_dssp             GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh-
Confidence            445667777777764211   1279999999999999999863  34456777777777665  556788888888776 


Q ss_pred             hhhChhhHHHhhHHHHHhhCC
Q psy14014        535 EACGPTVTANFLLPTVLNMAG  555 (615)
Q Consensus       535 ~~~~~~~~~~~i~~~l~~~~~  555 (615)
                         |++.+...++|.+....+
T Consensus       161 ---G~~~vr~~llP~l~~~~~  178 (196)
T 4atg_A          161 ---SKNVVNTVIREHAEEYKR  178 (196)
T ss_dssp             ---CHHHHHTHHHHHHHHHHH
T ss_pred             ---HHHHHHHhhhcCHHHHHH
Confidence               445555667787776554

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=93.41  E-value=0.65  Score=37.67  Aligned_cols=80  Identities=9%  Similarity=0.098  Sum_probs=58.2

Q ss_pred             hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch
Q psy14014        282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      ..+.+..+.+.+++.++.+...|+..|..+.++++.....+.....++..+.+++...++.||.-+...+..-+..++.+
T Consensus        40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            45677888888999999999999999999999988765432222334444555555577889888888877776665543

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=92.78  E-value=2.9  Score=37.00  Aligned_cols=131  Identities=10%  Similarity=0.008  Sum_probs=91.2

Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCccchhhhHHH
Q psy14014        209 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQ  287 (615)
Q Consensus       209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  287 (615)
                      ..+.++...+..+.|..|...+......+.+     .-++.+..++. -.+|.+-...+.+++.+....     ...+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence            5556667777888898888888765433332     24455555554 467888777776666665431     245778


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        288 AFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       288 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      .+.....+++..+|..|+.++-   ......     ..+.+++.+..++.|++..||.+++++|..++..
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l---~~~~~~-----~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQL---MLKEKT-----NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTT---TCGGGC-----CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHH---HHHHCC-----CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            8889999999999988877552   221111     1355678888899999999999999999988654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.11  E-value=2.1  Score=35.65  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      ..+++|..=..++..+..      ......+.+-.+.+.+++.++.++..|+..|..+.++++.....+.....++..+.
T Consensus        28 ~~~~Dw~~~leicD~I~~------~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~  101 (163)
T 1x5b_A           28 NTTEDWSLIMDICDKVGS------TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR  101 (163)
T ss_dssp             CSSCCHHHHHHHHHHHHH------SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence            345778654444433322      11234567778888899999999999999999999998876543222233444444


Q ss_pred             HhhCC-CCHHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVAD-PNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d-~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++.. .++.||.-++..+..-...++.
T Consensus       102 ~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A          102 AVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            54443 5678888887777666655554

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=92.02  E-value=2  Score=38.41  Aligned_cols=156  Identities=9%  Similarity=-0.030  Sum_probs=89.5

Q ss_pred             HHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHH-HhHHHHHHHhchhhhHhhhHHHHHH
Q psy14014        135 QRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA-GKLGELAKVVEVDYLKTDIIPMFVN  213 (615)
Q Consensus       135 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~-~~l~~l~~~~~~~~~~~~ll~~l~~  213 (615)
                      ..+-+++..+.|..|+.++........+.....+-. +..  ...+|.+=...+ ..++.+.+..+     ....+.+..
T Consensus        67 ~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p-----~~~~~~l~~  138 (232)
T 3jxy_A           67 RELWDLPEREFQAAALDIMQKYKKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHP-----ELISAYIPK  138 (232)
T ss_dssp             HHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCG-----GGGGGTHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCH-----HHHHHHHHH
Confidence            334444444455555555543333333333222221 211  356787755543 45566554321     235567788


Q ss_pred             hhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh
Q psy14014        214 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL  293 (615)
Q Consensus       214 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  293 (615)
                      ...|++..+|+.|+..+-..   . .+.....+++.+...+.|++..|+.+++..|..++..     ..+.+.+.+.+- 
T Consensus       139 W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~~~-  208 (232)
T 3jxy_A          139 WIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQNN-  208 (232)
T ss_dssp             HHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHS-
T ss_pred             HhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHC-
Confidence            88999999999987764221   1 1112335677788889999999999999998887753     234555555543 


Q ss_pred             cCCcHHHHHHHHHHHH
Q psy14014        294 KDSEAEVRAAAANKVR  309 (615)
Q Consensus       294 ~d~~~~vr~~a~~~l~  309 (615)
                       .-.+..+..|++.|+
T Consensus       209 -~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          209 -ELAPLSKREAIKHIK  223 (232)
T ss_dssp             -CCCHHHHHHHTTTTH
T ss_pred             -CCCHHHHHHHHHhcc
Confidence             333455555665554

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=91.35  E-value=1.8  Score=35.37  Aligned_cols=79  Identities=8%  Similarity=0.039  Sum_probs=61.1

Q ss_pred             hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC------CCHHHHHHHHHHHHhhc
Q psy14014        282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD------PNQHVKSALASVIMGLS  355 (615)
Q Consensus       282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d------~~~~vR~~~~~~l~~l~  355 (615)
                      ..+.+..+.+.+++.++.+...|+..|..+.++++.....+.....++..|.+++.+      .+..||.-++..+..-+
T Consensus        46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            456778888899999999999999999999999987765444445566667777754      46789988888887776


Q ss_pred             hhhcc
Q psy14014        356 PILGK  360 (615)
Q Consensus       356 ~~~g~  360 (615)
                      ..++.
T Consensus       126 ~~f~~  130 (149)
T 3g2s_A          126 VGLPE  130 (149)
T ss_dssp             HHCTT
T ss_pred             HHhCC
Confidence            66544

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=90.90  E-value=2.1  Score=37.90  Aligned_cols=130  Identities=12%  Similarity=0.009  Sum_probs=77.5

Q ss_pred             HHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhchhhhHhhhHHH
Q psy14014        132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM  210 (615)
Q Consensus       132 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~  210 (615)
                      .++..+-+++..+.|..|..++......+.+    +-++.+...+. ..+|.+=-..+.+++.+....     ...+.+.
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~  128 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI  128 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence            3444445555566666666666554333332    22333344443 457776666555555554432     2335677


Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy14014        211 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQK  274 (615)
Q Consensus       211 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~  274 (615)
                      +.+..+|++..+|+.|+..+-   .. ..+.....+++.+...+.|++..||++++..|..++.
T Consensus       129 i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k  188 (220)
T 2b6c_A          129 FALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  188 (220)
T ss_dssp             HHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            788888888888888877542   12 1222234567777778888888888888888777664

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=90.75  E-value=7.3  Score=33.35  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=78.6

Q ss_pred             HHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC------chhHHHHHHHHHHHHHhh--cChhhHHHhHHHHHHHh
Q psy14014        182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE------QDSVRLLAVEACVSIASL--LSQSDVEQLVMPTLRQC  253 (615)
Q Consensus       182 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~------~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~  253 (615)
                      ..|+.|.+.+..       +...+.++|.|.+++.++      +...-...+.....+..+  +.-+.+...++|.+..+
T Consensus        23 ~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            346665555443       344677899988877653      222222333334444332  22345566678887766


Q ss_pred             cCC---CChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHh
Q psy14014        254 SGD---TSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDS--EAEVRAAAANKVRDFCQ  313 (615)
Q Consensus       254 ~~d---~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~  313 (615)
                      +-.   ....+|..+++.++.++..++...  ....+...+.+.+.|+  ....+-.|+..|..+..
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~  162 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK  162 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence            411   112799999999999999988642  3456777777777775  46677788888887665

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=89.82  E-value=13  Score=34.76  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHhC---hHHhh---hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh-ChhhH-
Q psy14014        471 LCMTWLVDHVYAIREAATLNLKKLVEQFG---SEWAQ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC-GPTVT-  542 (615)
Q Consensus       471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~---~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~-~~~~~-  542 (615)
                      .+++....++.++-.-|..++..+.....   .++..   +.+.....+++.++|+.+|.-+++.||.+.-.- ..... 
T Consensus       168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~  247 (341)
T 1upk_A          168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  247 (341)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence            46678888999999999999988876422   12221   346667778899999999999999999987431 11111 


Q ss_pred             ----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh-hhhH-------HhhHHHHHhhhcCCC
Q psy14014        543 ----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE-TNVI-------QSQVKPALDKLNGDT  596 (615)
Q Consensus       543 ----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~-~~~~-------~~~~~~~l~~l~~d~  596 (615)
                          ...-+..+..++.|+..+++..|...+..++..=. ++..       .+.+...+..+..|+
T Consensus       248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                13467788889999999999999999988774311 1111       234555666666666

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.68  E-value=5.5  Score=33.40  Aligned_cols=101  Identities=10%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +..++|..=..++..+..-      .....+.+-.+.+.+++.++.|+..|+..|..+.++++.....+.....++..|.
T Consensus        26 l~~~Dw~~ileicD~I~~~------~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~   99 (171)
T 1juq_A           26 NRQEDWEYIIGFCDQINKE------LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   99 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHcC------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            3457786544444333221      1123467778888899999999999999999999998876654443445666666


Q ss_pred             HhhCC------CCHHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVAD------PNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++..      .+..||.-+++.+..-+..++.
T Consensus       100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  132 (171)
T 1juq_A          100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE  132 (171)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            66652      4679999888888777666654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=89.57  E-value=7.4  Score=31.67  Aligned_cols=101  Identities=6%  Similarity=0.053  Sum_probs=70.6

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +..++|..=..++..+..-      .......+-.+.+.+++.++.+...|+..|..+.++++.....+.....++..|.
T Consensus        14 l~~~dw~~~leicD~I~~~------~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~   87 (148)
T 1mhq_A           14 MSEQDWSAIQNFCEQVNTD------PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (148)
T ss_dssp             CSSCCHHHHHHHHHHHHHS------SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHcC------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            4467786544444433321      1124567778888899999999999999999999999877654444456677777


Q ss_pred             HhhCC------CCHHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVAD------PNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++.+      .+..||.-++..+..-+..++.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (148)
T 1mhq_A           88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (148)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            77764      4789998888877776665543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=88.45  E-value=4.5  Score=35.85  Aligned_cols=102  Identities=13%  Similarity=0.192  Sum_probs=67.2

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +.+++|..=..+++.+..      ......+.+..+.+.+++.++.+...|+..|..+.++.+.....+.....++..|.
T Consensus        21 ~~~~dw~~ileicD~I~~------~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~   94 (226)
T 3zyq_A           21 LLETDWESILQICDLIRQ------GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK   94 (226)
T ss_dssp             CSSCCHHHHHHHHHHHHT------TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence            445778654444443321      12234578888999999999999999999999999998876443222233444444


Q ss_pred             HhhC-CCCHHHHHHHHHHHHhhchhhcch
Q psy14014        334 DLVA-DPNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       334 ~~~~-d~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      ++++ ..+..||.-+++.+..-+..+..+
T Consensus        95 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           95 DLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4433 356788888888887777666543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=88.27  E-value=17  Score=34.02  Aligned_cols=190  Identities=9%  Similarity=0.033  Sum_probs=111.1

Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh-----H---HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD-----V---EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA  275 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-----~---~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~  275 (615)
                      ..+++..+...+..=+.+.|+.+...+..+.+.-.+..     +   .+.++..+..+-++++--.-.  ...|-..+.+
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~--G~mLRecir~  153 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNC--GIMLRECIRH  153 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHH--HHHHHHHHTS
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHH--HHHHHHHHHh
Confidence            45666666666666677777777777766655432210     0   234555666665555431111  1111111100


Q ss_pred             --hCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH---HHHHhhHHHHHHhhCCCCHHHHHHHHHH
Q psy14014        276 --VGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN---IIMTYILPYVKDLVADPNQHVKSALASV  350 (615)
Q Consensus       276 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~~~~~l~p~l~~~~~d~~~~vR~~~~~~  350 (615)
                        +...+..+..+-.+.+..+.++-+|-..|...+..+... ++....+   .-.+.++....+++.++++-+|+..++.
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence              000000111222345677788888988888888877653 2211111   1134566777789999999999999999


Q ss_pred             HHhhchhhcchhh------hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014        351 IMGLSPILGKHNT------VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       351 l~~l~~~~g~~~~------~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~  396 (615)
                      |+.+.-.-....+      .+.-+..+..+|+|.+..++..|+..+..++..
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            9988643221111      223467788899999999999999988877643

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=88.01  E-value=7  Score=34.78  Aligned_cols=133  Identities=8%  Similarity=0.066  Sum_probs=86.0

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc-CCCChHHHHHHH-HHHHHHHHHhCccchhhh
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS-GDTSWRVRYMVA-DKFTDLQKAVGPEITKTD  284 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~~~-~~l~~l~~~~~~~~~~~~  284 (615)
                      ....+.++..++..+.|..|+..+......+.++     .++.+..++ ...+|.+-...+ ..+|.+....     ...
T Consensus        62 ~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~  131 (232)
T 3jxy_A           62 FQIIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PEL  131 (232)
T ss_dssp             HHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGG
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHH
Confidence            3356666777778888988888876544333333     223333333 356788766553 4556655431     223


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      ..+.+.....|++..+|..|+..+-..   .....     ...+++.+...+.|++..||.++.++|..++..
T Consensus       132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~---~~~~d-----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          132 ISAYIPKWIASDNIWLQRAAILFQLKY---KQKMD-----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             GGGTHHHHHHSSCHHHHHHHHHTTTTC---GGGCC-----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHH---HhCCC-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            566778888899988888887665221   11111     234667777889999999999999999887654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=84.31  E-value=15  Score=29.58  Aligned_cols=84  Identities=6%  Similarity=-0.035  Sum_probs=57.0

Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI  280 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~  280 (615)
                      .+.+..+.+.+++.++.+...|+..+..+.++.|..-.    ...++.-+..+++..+..||..+...+...+..++.+.
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP  120 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            35566777778888999999999999999998886422    12233444444445677888888888888887777654


Q ss_pred             hhhhHHHH
Q psy14014        281 TKTDLVQA  288 (615)
Q Consensus       281 ~~~~l~~~  288 (615)
                      ....+...
T Consensus       121 ~l~~i~~~  128 (140)
T 3ldz_A          121 QLSLISAM  128 (140)
T ss_dssp             GGTHHHHH
T ss_pred             CchHHHHH
Confidence            33333333

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=83.95  E-value=28  Score=32.55  Aligned_cols=145  Identities=12%  Similarity=-0.034  Sum_probs=96.2

Q ss_pred             HHHhhhcCCchHHHHHHHHhHHHHh---hhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH-hChHHh--hhc
Q psy14014        433 IVELAEDSKWRVRLAIIEYMPLLAG---QLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ-FGSEWA--QST  506 (615)
Q Consensus       433 i~~~~~~~~~~vr~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~-~~~~~~--~~~  506 (615)
                      +.+.+.+.+.+.+..++..|..+..   .+-.+|....-+..+++...+...+....++.+++++-.. .|.+-.  ...
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~  202 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence            4444556666777777777777432   3445555555566777777777888899999999988653 233211  244


Q ss_pred             hhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh--HHHh-----------hHHHHHhhCC---CCCchHHHHHHHHHH
Q psy14014        507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV--TANF-----------LLPTVLNMAG---DNVANVRFNVAKTLQ  570 (615)
Q Consensus       507 i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~-----------i~~~l~~~~~---D~~~~vr~~a~~~l~  570 (615)
                      ++..+..+.......+-..|+..|..+........  +...           .+..+...+.   ..+.++..+++..+.
T Consensus       203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN  282 (339)
T 3dad_A          203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN  282 (339)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            77777787777777777788888888876643221  1111           1345555554   678899999999988


Q ss_pred             HHhHhhh
Q psy14014        571 KIGPILE  577 (615)
Q Consensus       571 ~l~~~~~  577 (615)
                      .+....+
T Consensus       283 ~lL~~ap  289 (339)
T 3dad_A          283 KTLAALP  289 (339)
T ss_dssp             HHHHHCS
T ss_pred             HHHhcCC
Confidence            8887665

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=83.41  E-value=4.2  Score=32.12  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=11.7

Q ss_pred             hhHHHHhhhcCCCchHHHHHHHHHH
Q psy14014        507 VIPKVVAMSRDQNYLHRMTCLFCIN  531 (615)
Q Consensus       507 i~~~l~~~~~d~~~~~R~~a~~~l~  531 (615)
                      ++|.|+.-++|.||.+...++..|.
T Consensus        32 ~lp~LL~WLQD~NWPvA~~i~~~L~   56 (134)
T 3ut4_A           32 IIFDLLKWLQDYNWPIAKDILPVVV   56 (134)
T ss_dssp             HHHHHHGGGSCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHH
Confidence            4444455555555554444444333

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=83.13  E-value=18  Score=29.73  Aligned_cols=100  Identities=10%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH-
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK-DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY-  331 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~-  331 (615)
                      +.+++|..=..++..+..     + .....+.+-.+.+.++ ..++.++..|+..|..+.++++.....+.....++.. 
T Consensus        29 l~~~Dw~~~leicD~I~~-----~-~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~  102 (157)
T 1elk_A           29 LQSEDWALNMEICDIINE-----T-EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV  102 (157)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----S-SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence            345778664444443322     1 1234567778888887 5889999999999999999998765543333344554 


Q ss_pred             HHHhhC---CCCHHHHHHHHHHHHhhchhhc
Q psy14014        332 VKDLVA---DPNQHVKSALASVIMGLSPILG  359 (615)
Q Consensus       332 l~~~~~---d~~~~vR~~~~~~l~~l~~~~g  359 (615)
                      +.+++.   ++...||.-++..+..-+..++
T Consensus       103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~  133 (157)
T 1elk_A          103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFR  133 (157)
T ss_dssp             THHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence            445553   3456888888777766665554

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=82.07  E-value=19  Score=29.23  Aligned_cols=96  Identities=7%  Similarity=-0.036  Sum_probs=64.7

Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh----hchhHHHH
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ----STVIPKVV  512 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  512 (615)
                      +..++|..-..+++.+..-  .-|+    ...+..+.+.+++++..+...|+..+..+++++|..+..    ..++..|.
T Consensus        14 l~~~dw~~~leicD~I~~~--~~~~----k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~   87 (148)
T 1mhq_A           14 MSEQDWSAIQNFCEQVNTD--PNGP----THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (148)
T ss_dssp             CSSCCHHHHHHHHHHHHHS--SHHH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHcC--CccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            3457776544444433221  1112    234556677788999999999999999999999986532    45777787


Q ss_pred             hhhcC------CCchHHHHHHHHHHHHHhhhC
Q psy14014        513 AMSRD------QNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       513 ~~~~d------~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      .++.+      .+..||..++..+...+..+.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (148)
T 1mhq_A           88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (148)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            77654      366788888888887776553

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=80.34  E-value=24  Score=29.23  Aligned_cols=98  Identities=8%  Similarity=-0.003  Sum_probs=63.0

Q ss_pred             CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHH
Q psy14014        177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQ  252 (615)
Q Consensus       177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~  252 (615)
                      .+++|..-..+|+.+..-      .....+.+-.+.+.++..++.+...|+..+..+..+.|..-.    ...++.-+..
T Consensus        29 ~~~Dw~~~leicD~I~~~------~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~  102 (163)
T 1x5b_A           29 TTEDWSLIMDICDKVGST------PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA  102 (163)
T ss_dssp             SSCCHHHHHHHHHHHHHS------SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence            456776655444443321      112335566677778888999999999999999999886321    1223333334


Q ss_pred             hcCC-CChHHHHHHHHHHHHHHHHhCccc
Q psy14014        253 CSGD-TSWRVRYMVADKFTDLQKAVGPEI  280 (615)
Q Consensus       253 ~~~d-~~~~vR~~~~~~l~~l~~~~~~~~  280 (615)
                      ++.. .+..||..+...+...+..++.+.
T Consensus       103 l~~~~~~~~Vk~kil~li~~W~~~f~~~~  131 (163)
T 1x5b_A          103 VIKNKAHPKVCEKLKSLMVEWSEEFQKDP  131 (163)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence            3333 567888888888888887777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	615
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-148
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-14
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-07
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-13
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-12
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	2e-11
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	5e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-10
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-09
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-07
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-08
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.003
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-05
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	3e-04
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	0.001

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  438 bits (1127), Expect = e-148
 Identities = 468/611 (76%), Positives = 524/611 (85%), Gaps = 25/611 (4%)

Query: 2   ASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI 61
           A++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TI
Sbjct: 1   AAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI 58

Query: 62  YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
           YDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +H
Sbjct: 59  YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118

Query: 122 SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181
           SP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178

Query: 182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 241
           MVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238

Query: 242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVR 301
           +E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVR
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298

Query: 302 AAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH 361
           AAA++KV++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK 
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358

Query: 362 NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGV 421
           NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                    
Sbjct: 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS------------------ 400

Query: 422 EFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVY 481
                +    +IVELAED+KWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCM WLVDHVY
Sbjct: 401 -----QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455

Query: 482 AIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV 541
           AIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL+E CG  +
Sbjct: 456 AIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515

Query: 542 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVK 601
           T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL  D DVDVK
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575

Query: 602 YFAQEAISSIA 612
           YFAQEA++ ++
Sbjct: 576 YFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 6e-14
 Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 1/201 (0%)

Query: 76  GTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQ 135
                 +G  +    LLP +  LA   +  VR   +E + L++ Q      +     L  
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447

Query: 136 RLASGDWFTSRTSACGLFSVCYPRV-TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 194
                  +  R +A         +       A +      +  D   + R      +  L
Sbjct: 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507

Query: 195 AKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 254
           ++V   D     ++P  + +A D   +VR    ++   I  +L  S ++  V P L + +
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 567

Query: 255 GDTSWRVRYMVADKFTDLQKA 275
            D    V+Y   +  T L  A
Sbjct: 568 QDQDVDVKYFAQEALTVLSLA 588

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 1/138 (0%)

Query: 476 LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE 535
           L +    +R  +   L  +    G E  +S ++P +     D++    +     +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77

Query: 536 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD 595
             G     + LLP + ++A      VR    ++L+ I      + +++   P + +L G 
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137

Query: 596 TDVDVKYFAQEAISSIAD 613
                +  A    S    
Sbjct: 138 DWFTSRTSACGLFSVCYP 155

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 1e-13
 Identities = 52/399 (13%), Positives = 121/399 (30%), Gaps = 47/399 (11%)

Query: 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC--SGDTSWRV 261
           + ++    +     E       + +    IA      +    ++P L     + +++  +
Sbjct: 87  RREVKNYVLQTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM 145

Query: 262 RYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK-----DSEAEVRAAAANKVRDFCQNLD 316
           +    +    + + + PE  +    +    +++     +    V+ AA N + +  +   
Sbjct: 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 205

Query: 317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASVI---MGLSPILGKHNTVDHLLPLFLS 373
           A   +     +I+  V +    P+  V+ A    +   M L     +      L  + + 
Sbjct: 206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265

Query: 374 QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI 433
            +K +  EV L  I                               +  E  D  + A   
Sbjct: 266 AMKSDIDEVALQGIEFW--------------------------SNVCDEEMDLAIEASEA 299

Query: 434 VELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKK 493
            E     +   +      +  L   L      +           D  +   +AA + L  
Sbjct: 300 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ------DENDDDDDWNPCKAAGVCLML 353

Query: 494 LVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL---LPTV 550
           L      +     V+P +    ++ ++ +R   +     + E   P+     +   +PT+
Sbjct: 354 LATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 412

Query: 551 LNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 589
           + +  D    VR   A T+ +I  +L    I       L
Sbjct: 413 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 451

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 48/386 (12%), Positives = 114/386 (29%), Gaps = 27/386 (6%)

Query: 8   PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI---YDE 64
             ++   +   + +    +     ++ + ++ IA A        ELIP L   +      
Sbjct: 83  DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 142

Query: 65  DEVLLALAEQLGTFTPNVGGPEYVHCLLPPLES-----LATVEETVVRDKAVE----SLR 115
           + +  +  E +G    ++   +        L +             V+  A      SL 
Sbjct: 143 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 202

Query: 116 LISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGVKAELRSH 171
              A           + +V           R +A        S+ Y  +   +   L + 
Sbjct: 203 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 262

Query: 172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 231
                + D   V          +        ++           +  + + +  A  A  
Sbjct: 263 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE---AAEQGRPPEHTSKFYAKGALQ 319

Query: 232 SIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQM 291
            +  +L+Q+  +Q       +   D  W            L      +I    ++   + 
Sbjct: 320 YLVPILTQTLTKQD------ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKE 372

Query: 292 LLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVI 351
            +K+ +   R AA        +  +    + +++   +P + +L+ DP+  V+   A  +
Sbjct: 373 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ-AMPTLIELMKDPSVVVRDTAAWTV 431

Query: 352 MGLSPILGKHNTVDHLLPLFLSQLKD 377
             +  +L +    D  L   L  L +
Sbjct: 432 GRICELLPEAAINDVYLAPLLQCLIE 457

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 2e-12
 Identities = 57/404 (14%), Positives = 129/404 (31%), Gaps = 21/404 (5%)

Query: 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRY 263
              I    +N   D    +R        +IAS     +   L +P L        +    
Sbjct: 86  TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLCSLLDSEDYNTCE 144

Query: 264 MVADKFTDLQKAVGPEITK-------TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD 316
                   + +     +           ++  F    K S  ++R+ A   V  F  +  
Sbjct: 145 GAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR- 203

Query: 317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQ 374
                 + +      +  L  D    V+  +   ++ L  +        + +++   L +
Sbjct: 204 -TQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 262

Query: 375 LKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV 434
            +D+   V L        + E    +   VR  + + +P+L   +     D  L    + 
Sbjct: 263 TQDQDENVALEACEFWLTLAEQPICKDVLVR-HLPKLIPVLVNGMKYSDIDIILLKGDVE 321

Query: 435 ELAE----DSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN 490
           E       +   R R      +     + G+E  D+  + +         + +R+ +   
Sbjct: 322 EDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEI-DDDDTISDWNLRKCSAAA 380

Query: 491 LKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANF--LLP 548
           L  L   +  E     ++P +  +     ++ + + +  +  +AE C   +      L+P
Sbjct: 381 LDVLANVYRDELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 439

Query: 549 TVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 592
            ++    D  A VR     TL +    + +    + +KP + +L
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 483

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 5e-07
 Identities = 53/336 (15%), Positives = 101/336 (30%), Gaps = 33/336 (9%)

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
             +  +          S     G  +    +       EL  H      D   +VR    
Sbjct: 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITC 457

Query: 189 GKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245
             L   A  V     D     ++   +    D    V+  A  A  ++        V  L
Sbjct: 458 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 517

Query: 246 --VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAA 303
             ++ TL         +   ++ D    L  +VG  + K + +Q     L      ++  
Sbjct: 518 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 577

Query: 304 AANKVRDF-CQNLDAYNQENIIMTYILPYVKDLVADPNQHVK------------------ 344
             +      C +  A   ++  + Y  P  +  V    + +                   
Sbjct: 578 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 637

Query: 345 ------SALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 398
                   L+ +  GL   + +     ++L L    ++D+ PEVR +  + L  + +   
Sbjct: 638 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF 697

Query: 399 IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV 434
                V+  I ++MP+L   L  EF     NA   +
Sbjct: 698 QH---VKPCIADFMPILGTNLNPEFISVCNNATWAI 730

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 6e-07
 Identities = 65/530 (12%), Positives = 148/530 (27%), Gaps = 52/530 (9%)

Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161
              ++R      +  I+++    +       L   L S D+ T   +   L  +C     
Sbjct: 100 SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC----- 154

Query: 162 AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 221
                                          E+     +D     +IP F+   +     
Sbjct: 155 ---------------------------EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 187

Query: 222 VRLLAVEACVSIASLLSQSDVEQL--VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE 279
           +R  AV          +Q+ +  +      L   +GD    VR  V          V  +
Sbjct: 188 IRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM-LLEVRMD 246

Query: 280 ITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV 336
                +    + +    +D +  V   A        +     +     +  ++P + + +
Sbjct: 247 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM 306

Query: 337 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 396
              +  +      V    +    + +          +  +    +       + D +++ 
Sbjct: 307 KYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRS-RTVAQQHDEDGIEEEDDDDDEIDDD 365

Query: 397 IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV-RLAIIEYMPLL 455
             I  W +R      + +LA     E     L  L  +    +   +   + ++  +   
Sbjct: 366 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG 425

Query: 456 AGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVV 512
             Q  + +  E +  L    L D    +R      L +      S+        ++ +++
Sbjct: 426 CMQGMIPYLPELIPHLIQ-CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 484

Query: 513 AMSRDQNYLHRMTCLFCINVLAEACGPTVTANF--LLPTVLNMAGDNVANVRFNVAKTLQ 570
               D N   +         L E     +      +L T++             +   + 
Sbjct: 485 KRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIG 544

Query: 571 KIGP-----ILETNVIQSQVKPALDKLNGDTDVDVKYF-AQEAISSIADS 614
            +       + +   IQ  + P + K N   D D   F   E +SS+A +
Sbjct: 545 TLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATA 594

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 8e-06
 Identities = 56/411 (13%), Positives = 120/411 (29%), Gaps = 36/411 (8%)

Query: 25  EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG 84
           +D++ R +  + ++      G E    +      +    +  +    A  L         
Sbjct: 331 QDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD 390

Query: 85  P--EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDW 142
               ++  LL  L               + ++     Q     L      L+Q L+    
Sbjct: 391 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 450

Query: 143 FTSRTSACGLFSVCY---PRVTAGVKAELRSHFRNLCQDDTPMVRRA---AAGKLGELAK 196
                +   L    +    +        L +       D    V+ A   A   L E A 
Sbjct: 451 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 510

Query: 197 VVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA----CVSIASLLSQSDVEQLVMPTLRQ 252
              V YL   I+   V      Q    L+  +A      S+   L++ +  Q++MP L Q
Sbjct: 511 TELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 569

Query: 253 ---------------------CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQM 291
                                 +              +      V   + +  L  A   
Sbjct: 570 KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 629

Query: 292 LLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVI 351
             +  + +    A + +    + L    ++ +  + IL  +   + D    V+ +  +++
Sbjct: 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALL 689

Query: 352 MGLSPILGKHNT--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 400
             L+    +H    +   +P+  + L  E   V  N    +  ++  +GI+
Sbjct: 690 GDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 740

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 62.1 bits (150), Expect = 2e-11
 Identities = 40/223 (17%), Positives = 68/223 (30%), Gaps = 66/223 (29%)

Query: 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 232
             L +D   +VRRA A +L                      L  DE   VR+   +    
Sbjct: 72  TPLIRDSDEVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVAD---- 112

Query: 233 IASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQML 292
                      +L +  L Q + D  + VR  V  +                        
Sbjct: 113 -----------RLPLEQLEQMAADRDYLVRAYVVQRIP---------------PGRLFRF 146

Query: 293 LKDSEAEVRAAAANK-----VRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSAL 347
           ++D + +VR   A +     +    Q+ +   +  +        + +L+ DP+  V+ A 
Sbjct: 147 MRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAA 206

Query: 348 ASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 390
                            +H     L +L +  PEVRL I   L
Sbjct: 207 V----------------EHASLEALRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 49.0 bits (116), Expect = 5e-07
 Identities = 44/257 (17%), Positives = 81/257 (31%), Gaps = 67/257 (26%)

Query: 255 GDTSWRVRYM-VADKFTDLQKAVGPE------------ITKTDLVQAFQMLLKDSEAEVR 301
           GD    V      D+F      +  +              +   V+A   L++DS+  VR
Sbjct: 24  GDACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVR 83

Query: 302 AAAANKV-RDFCQNL----DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP 356
            A A ++ R+    L    D   +  +     L  ++ + AD +  V++ +         
Sbjct: 84  RAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVV-------- 135

Query: 357 ILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN--LDCVNEVIGIQQWRVRLAIIEYMPL 414
                      L  F+   +DE  +VR  +      + +  +    +  VR  +   +  
Sbjct: 136 ----QRIPPGRLFRFM---RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG 188

Query: 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT 474
                             ++EL  D  W VRLA +E+  L A                + 
Sbjct: 189 DD----------------LLELLHDPDWTVRLAAVEHASLEA----------------LR 216

Query: 475 WLVDHVYAIREAATLNL 491
            L +    +R A    L
Sbjct: 217 ELDEPDPEVRLAIAGRL 233

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 60/478 (12%), Positives = 144/478 (30%), Gaps = 56/478 (11%)

Query: 95  LESLATVEETVVRDKAVESLRLISAQHSP-------HDLEAHFVPLVQRLASGDWFTSRT 147
           LE+     +  +R  +   L+ +S  +           L      L  R+ +     +  
Sbjct: 10  LENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNEL 69

Query: 148 SAC------GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 201
            +               +V+   K +++++         P +  AAA  +  +A +    
Sbjct: 70  VSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH 129

Query: 202 YLKTDIIP-MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWR 260
               +++  M  N   ++ ++V+  ++ A   +                           
Sbjct: 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYM--------------------------- 162

Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ 320
                 +      +A+        +         ++   VR AA N + D    +    +
Sbjct: 163 -----CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217

Query: 321 ENIIMTYILPYVKDLVADPNQHVKSALASVI---MGLSPILGKHNTVDHLLPLFLSQLKD 377
                 Y++  V +     +  V++A    +   M       K      L  L ++ +K 
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277

Query: 378 ECPEVRLNIISNLDCVNEV---IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV 434
              +V    +     + E    I  +  +   + ++        +     +         
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337

Query: 435 ELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKL 494
           E  ED  W V ++    + L A   G    +  L  +         +  REAA +    +
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNI-TADNWRNREAAVMAFGSI 396

Query: 495 VEQFGSEWAQ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPT 549
           ++              +P ++ +  DQ+   + T  +CI  +A++   ++     LP 
Sbjct: 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 53/480 (11%), Positives = 136/480 (28%), Gaps = 44/480 (9%)

Query: 166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLL 225
           AE      N        +R  +  +L +L+    + +     +   V + ++ +   R+L
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFA---GLSSQVLIDENTKLEGRIL 60

Query: 226 AV----------------EACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKF 269
           A                 +      + +S     Q +             R+    A   
Sbjct: 61  AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQ-IKTNALTALVSIEPRIANAAAQLI 119

Query: 270 TDLQKAVGPEITKTDLVQA-FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQE-----NI 323
             +     P     +L++        +    V+ A+   +   C++ D  +Q      N 
Sbjct: 120 AAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179

Query: 324 IMTYILPYVKDLVADPNQHVKSA--LASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPE 381
           I+  I+   +         + +   LA  ++ +   + +    ++L+ +     + E  E
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239

Query: 382 VRLNIISNL------------DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLN 429
           V+      L              + + +         +  + +  +  +      +E+++
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299

Query: 430 ALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATL 489
               +     S  +     +  +  +   L      +           D   ++   A L
Sbjct: 300 IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN----EDPEDDDWNVSMSAGACL 355

Query: 490 NLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPT 549
            L                + + +     +N    +     I    +    T   +  LP+
Sbjct: 356 QLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS 415

Query: 550 VLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAIS 609
           +LN+  D    V+   A  + +I   +  ++   Q  P + +       D    A     
Sbjct: 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSW 475

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 73/630 (11%), Positives = 170/630 (26%), Gaps = 48/630 (7%)

Query: 18  LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED---------EVL 68
            +  L + + ++   + + ++ IA          EL+  + +    E            L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE----SLRLISAQHSPH 124
             + E     +  +        +     + +T     VR  A+     SL  I       
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219

Query: 125 DLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGVKAELRSHFRNLCQDDT 180
               + + +V      +    + +A G      S  Y  +   ++  L +      +   
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN 279

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             V          + +         DI        Q    S           + +LL+  
Sbjct: 280 DKVASMTVEFWSTICEEEI------DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN-- 331

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
                ++    +   D  W V            +  G  I +   ++  +  +       
Sbjct: 332 -----LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV-LEFVEQNITADNWRN 385

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           R AA           D   +    +   LP + +L+ D +  VK   A  I  ++  + +
Sbjct: 386 REAAVMAFGSIMDGPDKVQRTY-YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444

Query: 361 HNTVDHLLPLF---LSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAG 417
                  LP           + P+V  N    +  + E +              +     
Sbjct: 445 SIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504

Query: 418 QLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV 477
                  +E     S               + E    ++  + ++   + ++       +
Sbjct: 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFV-MDKLGQTMSVDENQLTL 563

Query: 478 D---HVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
           +    +  ++      L  ++ +  S     A   +      + +  +        + I+
Sbjct: 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623

Query: 532 VLAEACGPTVTA--NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS--QVKP 587
            LA + G           P +L       + V       +  I   LE +  +    +  
Sbjct: 624 ALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN 683

Query: 588 ALDKL--NGDTDVDVKYFAQEAISSIADSI 615
            L ++  N +   ++K         IA +I
Sbjct: 684 VLAQMISNPNARRELKPAVLSVFGDIASNI 713

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 2e-09
 Identities = 55/449 (12%), Positives = 128/449 (28%), Gaps = 50/449 (11%)

Query: 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTD------IIPMFVNLAQDEQDSVRLLAVEAC 230
                  R  A     +L   ++ D +K D      ++ M + L +D+   V+ LAV+  
Sbjct: 13  TSSDKDFRFMA---TNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69

Query: 231 VSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQA-- 288
             + S + +  VE +V  TL         ++R + +     +   + P  + + L     
Sbjct: 70  GPLVSKVKEYQVETIV-DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC 128

Query: 289 -------FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQ 341
                     + K  +  V+  A + + D                 IL  +   +  P  
Sbjct: 129 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQLTSPRL 186

Query: 342 HVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 401
            V+      +  L    G       L+   LS+L                          
Sbjct: 187 AVRKRTIIALGHLVMSCGNI-VFVDLIEHLLSELSKN---------------------DS 224

Query: 402 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI-VELAEDSKWRVRLAIIEYMPLLAGQLG 460
                  I+ +  ++ Q G    +     + + V+        +R   I+       +  
Sbjct: 225 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 284

Query: 461 VEF--FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQ 518
            E       +  +C+ +L        +    +   +    G +  Q        +   D 
Sbjct: 285 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ--GSDDEYSDDDDM 342

Query: 519 NYLHRMTCLFCINVLAEACGPTVTANF--LLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 576
           ++  R     C++ +       +   +  + P +++   +   NV+ +V      +    
Sbjct: 343 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 402

Query: 577 ETNVIQSQVKPALDKLNGDTDVDVKYFAQ 605
                      A+++      +       
Sbjct: 403 RPVQSWLCDPDAMEQGETPLTMLQSQVPN 431

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 5e-09
 Identities = 33/251 (13%), Positives = 77/251 (30%), Gaps = 18/251 (7%)

Query: 175 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI- 233
           L +D    V+  A   LG L   V+   ++T I+         +++ +R ++     ++ 
Sbjct: 53  LLEDKNGEVQNLAVKCLGPLVSKVKEYQVET-IVDTLCTNMLSDKEQLRDISSIGLKTVI 111

Query: 234 --------ASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK--T 283
                    S L+ +  +++        +      V+    D   D+    G  +     
Sbjct: 112 GELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 171

Query: 284 DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHV 343
            ++      L      VR      +     +L       + +  I   + +L  + +   
Sbjct: 172 SILTCLLPQLTSPRLAVRKRTIIAL----GHLVMSCGNIVFVDLIEHLLSELSKNDSMST 227

Query: 344 KSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 401
                  I  +S   G      ++ ++PL +     +  E+R   I   +        + 
Sbjct: 228 TRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 287

Query: 402 WRVRLAIIEYM 412
           +     II   
Sbjct: 288 YPHVSTIINIC 298

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 62/519 (11%), Positives = 159/519 (30%), Gaps = 41/519 (7%)

Query: 109  KAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-----WFTSRTSACGLFSVCYPRVTAG 163
            K +  L   S+  +   ++  F   ++RL + D        + +    +       + + 
Sbjct: 545  KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604

Query: 164  VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR 223
            +   L+     L  + T +    A   +      +++  +  + +P+  +  +  Q +++
Sbjct: 605  LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALK 664

Query: 224  LLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI 280
            L  + A   +    S S    +   V+  L     ++   V  M     T L K     +
Sbjct: 665  LGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 724

Query: 281  TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN 340
            +K       +++       ++  A + + DF Q L      N+    +L  +   V   +
Sbjct: 725  SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 784

Query: 341  QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 400
                                H    + +   ++ L   CP+    ++      +      
Sbjct: 785  ----------------TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF-IQDVKNSRS 827

Query: 401  QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG 460
               +RL  +  +  +   + +    E  +   I+E        V+ A    +  ++    
Sbjct: 828  TDSIRLLALLSLGEVGHHIDLSGQLELKSV--ILEAFSSPSEEVKSAASYALGSISVGNL 885

Query: 461  VEFFDEKLNALCMTWLVDH--VYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQ 518
             E+    L  +       +  +++++E  +      ++ +        +   ++      
Sbjct: 886  PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY-----VENIWALLLKHCECA 940

Query: 519  NYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 578
                R     C+  L       +    LLP +        +  R +V   ++        
Sbjct: 941  EEGTRNVVAECLGKLT-----LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995

Query: 579  NVIQ--SQVKPALDKLNGDTDVDVKYFAQEAISSIADSI 615
             +            K   D D++V+  A    +S A + 
Sbjct: 996  PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1034

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 9e-06
 Identities = 52/469 (11%), Positives = 125/469 (26%), Gaps = 55/469 (11%)

Query: 73   EQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP 132
              +      +     +   +P L S     +  ++   + +L ++   +S     A    
Sbjct: 630  TLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDA 689

Query: 133  LVQRLASGDWFT------SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD--TPMVR 184
            ++  L      +         S     +  YP   + +   + +    L +         
Sbjct: 690  VLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGAL 749

Query: 185  RAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR----LLAVEACVSIASLLSQS 240
             A       L      +    D++ M       +  ++       ++  CV+  +     
Sbjct: 750  SAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK 809

Query: 241  DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
            +   +V   ++      S     ++A               + +L             EV
Sbjct: 810  EGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV 869

Query: 301  RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASV--IMGLSPIL 358
            ++AA+  +                +   LP+V   +    +     L S+  I+  + ++
Sbjct: 870  KSAASYALGSISVG---------NLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV 920

Query: 359  GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQ 418
            G    V+++  L L   +      R  +   L                          G+
Sbjct: 921  GLKPYVENIWALLLKHCECAEEGTRNVVAECL--------------------------GK 954

Query: 419  LGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNALCMTWL 476
            L +   +  L  L             R +++  +               +      +  L
Sbjct: 955  LTLIDPETLLPRL--KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL 1012

Query: 477  VDHVYAIREAATLNLKKLVEQFGSEWAQ--STVIPKVVAMSRDQNYLHR 523
             D    +R  A +          S       TV+P +   ++ +  L R
Sbjct: 1013 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIR 1061

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 33/230 (14%), Positives = 56/230 (24%), Gaps = 27/230 (11%)

Query: 174 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 233
            L  D   + R ++A  L              D + + +    D+    R +       I
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 234 ASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL 293
                  D   +          D S  VR    +      K     I    +V+  Q+  
Sbjct: 78  KICKKCED--NVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQITA 133

Query: 294 KDSEAEVRAAAAN-------------KVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN 340
            D    VR A A               +                   I  Y    + D  
Sbjct: 134 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 193

Query: 341 QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 390
             +       +   + I   +     +L +   +LK     V  +II   
Sbjct: 194 VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAA 241

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 25/130 (19%)

Query: 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 236
            D+   VRR  +  L  +           +     +    +E   +R  A          
Sbjct: 2   ADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWII------ 46

Query: 237 LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS 296
              +  ++  +  L +   D S  VR   A       +++  +I    +  A + L +  
Sbjct: 47  --GNFQDERAVEPLIKLLEDDSGFVRSGAA-------RSLE-QIGGERVRAAMEKLAETG 96

Query: 297 EAEVRAAAAN 306
               R  A N
Sbjct: 97  TGFARKVAVN 106

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 55/400 (13%), Positives = 107/400 (26%), Gaps = 33/400 (8%)

Query: 18  LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------VLLA 70
           ++  L  E      ++ + ++ IA A        ELIP L   + + +         L A
Sbjct: 95  VLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153

Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKA------VESLRLISAQHSPH 124
           +        P        + +L  +      EE     K       + SL    A     
Sbjct: 154 IGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212

Query: 125 DLEAHFVPLVQRLASGDWFTSRTSACG----LFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
                 + +V           R +A      + S+ Y  +   +   L +      + D 
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
             V          +           D+       A+  +         A  ++  L+   
Sbjct: 273 DEVALQGIEFWSNVCDEE------MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV--- 323

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
            +    +    +   D  W            L      +I    L    + +        
Sbjct: 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
              AA             +Q   ++   +P + +L+ DP+  V+   A  +  +  +L +
Sbjct: 384 D--AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441

Query: 361 HNTVDHLLPLFLSQLK---DECPEVRLNIISNLDCVNEVI 397
               D  L   L  L       P V  N+      + E  
Sbjct: 442 AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAA 481

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	615
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.96
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.95
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.95
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.94
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.93
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.9
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.84
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.73
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.67
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.62
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.59
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.54
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.48
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.42
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.37
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.19
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.18
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.15
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.02
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.72
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.66
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.92
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.82
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	94.65
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	92.48
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.38
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	90.74
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.75
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	89.46
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	87.61
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.58
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	85.99
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	85.4

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-65  Score=548.60  Aligned_cols=583  Identities=80%  Similarity=1.214  Sum_probs=548.4

Q ss_pred             CCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcc
Q psy14014          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPE   86 (615)
Q Consensus         7 ~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~   86 (615)
                      -+||+++||+.+++.|+|+|+.+|..|++.|+.++..+|+++++++++|++.+.++++++|+..++++|+.+.+.+++++
T Consensus         4 ~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~   83 (588)
T d1b3ua_           4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             CcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Confidence            47999999999999999999999999999999999999999999999999999999998999999999999999988899


Q ss_pred             hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHH
Q psy14014         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (615)
Q Consensus        87 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  166 (615)
                      +.+.++|.+..++.+++..||..|++++..++...+++.+.+.++|++.++..+++...|.+++.+++.++...++....
T Consensus        84 ~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~  163 (588)
T d1b3ua_          84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhH
Q psy14014        167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV  246 (615)
Q Consensus       167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  246 (615)
                      ++++.+.++++|+++.||+.++..++.+++..+.+.....++|.+..+.+|+++.||..|+.++..++..++.+.....+
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i  243 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHH
Confidence            99999999999999999999999999999999888888899999999999999999999999999999999998888889


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      +|.+.++++|++|+||.+++++++.++..++.+.....++|.+..+++|.+++||..|+.+++.++..++.......+.+
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~  323 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence            99999999999999999999999999999988777778999999999999999999999999999998887766666788


Q ss_pred             hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHH
Q psy14014        327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL  406 (615)
Q Consensus       327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  406 (615)
                      .++|.+....+|.++.||..++.++..++..+|.+...+.++|.+.+.++|++++||..++.+++.+....+.....+.+
T Consensus       324 ~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~l  403 (588)
T d1b3ua_         324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL  403 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHH
Confidence            99999999999999999999999999999999988888899999999999999999999999999888777654433322


Q ss_pred             HHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHH
Q psy14014        407 AIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREA  486 (615)
Q Consensus       407 ~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~  486 (615)
                           +                  |.+.+.++|.+|++|..+++.++.+++.+|.+++.+.+.|.++.++.|+.+.||.+
T Consensus       404 -----l------------------~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~  460 (588)
T d1b3ua_         404 -----L------------------PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA  460 (588)
T ss_dssp             -----H------------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred             -----H------------------HHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHH
Confidence                 3                  67778889999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHH
Q psy14014        487 ATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVA  566 (615)
Q Consensus       487 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~  566 (615)
                      |+.+++.++..+|.++....++|.+.++.+++++.+|+.++.+++.+.+.++.+.+.+.++|.+.++++|++++||.+++
T Consensus       461 A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~  540 (588)
T d1b3ua_         461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            99999999999999888888999999999999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014        567 KTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       567 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~  612 (615)
                      ++|..+.+..++....+.+.|++.+|.+|+|.+||++|.+|++.++
T Consensus       541 ~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         541 KSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            9999999988888888899999999999999999999999999876

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-44  Score=380.20  Aligned_cols=522  Identities=18%  Similarity=0.234  Sum_probs=459.1

Q ss_pred             CccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCc
Q psy14014         24 NEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE  102 (615)
Q Consensus        24 s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~  102 (615)
                      .++..+|..+.+.|+.+...+|.....+.++|.+..++.+++. ||..++.+++.+............++|.+..+..++
T Consensus        59 ~~~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~  138 (588)
T d1b3ua_          59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD  138 (588)
T ss_dssp             CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            3444688888888888877776665788899999888887775 999999999999887665555677889999999888


Q ss_pred             hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh-hHHHHHHHHHHHhCCCCh
Q psy14014        103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLCQDDTP  181 (615)
Q Consensus       103 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~  181 (615)
                      ....|..|+..+..+....++. ....+++.+..++.|++..+|..++..++.++...+.. ....+++.+..+++|+++
T Consensus       139 ~~~~r~~a~~ll~~~~~~~~~~-~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~  217 (588)
T d1b3ua_         139 WFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD  217 (588)
T ss_dssp             SHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCH
T ss_pred             chHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCch
Confidence            8889999999898888887754 45668899999999999999999999999999888754 456788999999999999


Q ss_pred             HHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHH
Q psy14014        182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRV  261 (615)
Q Consensus       182 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v  261 (615)
                      .||..++++++.++...+.+.....++|.+..+++|+++.||..+.++++.++..++.+.....++|.+..+++|+++.|
T Consensus       218 ~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~v  297 (588)
T d1b3ua_         218 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV  297 (588)
T ss_dssp             HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred             hhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHH
Confidence            99999999999999998887778889999999999999999999999999999999988777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCccc----hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC
Q psy14014        262 RYMVADKFTDLQKAVGPEI----TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA  337 (615)
Q Consensus       262 R~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~  337 (615)
                      |..++..++.++..++...    ..+.++|.+...++|.++.||..++..+..+...++..    ...+.++|.+...++
T Consensus       298 r~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~----~~~~~l~p~l~~~l~  373 (588)
T d1b3ua_         298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD----NTIEHLLPLFLAQLK  373 (588)
T ss_dssp             HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH----HHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh----HHHHHHHHHHHHHHH
Confidence            9999999999998776543    23578999999999999999999999988887766543    346778999999999


Q ss_pred             CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhh
Q psy14014        338 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAG  417 (615)
Q Consensus       338 d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~  417 (615)
                      |+++.+|..++.+++.+...+|.....+.++|.+.+.++|.+|.+|..+++.+..+...+|.+.+               
T Consensus       374 d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~---------------  438 (588)
T d1b3ua_         374 DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---------------  438 (588)
T ss_dssp             CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---------------
T ss_pred             hhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhH---------------
Confidence            99999999999999999888888778889999999999999999999999988877666554332               


Q ss_pred             ccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy14014        418 QLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ  497 (615)
Q Consensus       418 ~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~  497 (615)
                             .+.+. |.+..++.|+.|.+|.+++.+++.++..+|.++..+.++|.+..++.|+++.+|.+++.+++.+...
T Consensus       439 -------~~~l~-~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~  510 (588)
T d1b3ua_         439 -------DEKLN-SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV  510 (588)
T ss_dssp             -------CHHHH-HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHH-HHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                   22222 6777889999999999999999999999999988889999999999999999999999999999999


Q ss_pred             hChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        498 FGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       498 ~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                      ++.+.+.+.++|.++++++|+.+++|.+++++++.+....+...+.+.+.|.+.++.+|+|.+||..|..++..+.
T Consensus       511 ~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         511 CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            8888777889999999999999999999999999999999888888899999999999999999999999998763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=280.55  Aligned_cols=597  Identities=14%  Similarity=0.121  Sum_probs=420.0

Q ss_pred             chHH-HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCC-------
Q psy14014         13 YPIA-VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG-------   83 (615)
Q Consensus        13 ~~i~-~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~-------   83 (615)
                      ..|. .++..+.++++.+|..+...++.++...+++ .|++++|.|.+.++++++ ++..+..+|+++.+...       
T Consensus        87 ~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~-~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~  165 (888)
T d1qbkb_          87 DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV  165 (888)
T ss_dssp             HHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSC-SSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC-
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence            3453 3457788899999999999999999876666 799999999998887774 77766666766654211       


Q ss_pred             CcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCC
Q psy14014         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (615)
Q Consensus        84 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  161 (615)
                      .......++|.+.+...++++.+|..|+.++..+....+..  .....+++.+.....+++..+|..++..+..+.....
T Consensus       166 ~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  245 (888)
T d1qbkb_         166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRM  245 (888)
T ss_dssp             --CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCT
T ss_pred             HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhH
Confidence            12345668888888889999999999999998877655532  1223466777778888888999999998887765554


Q ss_pred             hhh---HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhh-------------------
Q psy14014        162 AGV---KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLA-------------------  215 (615)
Q Consensus       162 ~~~---~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~-------------------  215 (615)
                      +..   ...+++.+...++|.+.+||..+++.+..+++.-..    ....+.++|.+....                   
T Consensus       246 ~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  325 (888)
T d1qbkb_         246 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDET  325 (888)
T ss_dssp             TTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhh
Confidence            432   234566667778899999999999887766542110    001112222211100                   


Q ss_pred             -----------------------------------------ccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc
Q psy14014        216 -----------------------------------------QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS  254 (615)
Q Consensus       216 -----------------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~  254 (615)
                                                               .+..+.+|+.+..++..++..++++ ..+.++|.+.+.+
T Consensus       326 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~-il~~~l~~l~~~l  404 (888)
T d1qbkb_         326 IPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELL  404 (888)
T ss_dssp             SCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS-SHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH-HHHHHHHHHHHhh
Confidence                                                     0123468999999998888877765 4678899999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCcc--chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHH
Q psy14014        255 GDTSWRVRYMVADKFTDLQKAVGPE--ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYV  332 (615)
Q Consensus       255 ~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  332 (615)
                      .+++|+.|.+++.+||.++....+.  ...++++|.+...++|+++.||..++.+++.++..+...... .+...+++.+
T Consensus       405 ~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~-~~~~~~l~~l  483 (888)
T d1qbkb_         405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMTEL  483 (888)
T ss_dssp             TSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH-HHTTTHHHHH
T ss_pred             ccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhhHHHH
Confidence            9999999999999999987643221  124678999999999999999999999999999876554332 4567788888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh----HHHHHH
Q psy14014        333 KDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ----QWRVRL  406 (615)
Q Consensus       333 ~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~  406 (615)
                      ...+.|++++||.+++.++..+.+..+.  ..+.+.+++.+...+++.....+..+..+++.+....+..    .+-+.+
T Consensus       484 l~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l  563 (888)
T d1qbkb_         484 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML  563 (888)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHH
Confidence            8999999999999999999999887665  3456677888888888877777777777777766544321    111111


Q ss_pred             -------------------HHHhhhhhhhhccccchhh---hhhh--hHHHHHh-------------hhcCCchHHHHHH
Q psy14014        407 -------------------AIIEYMPLLAGQLGVEFFD---EKLN--ALSIVEL-------------AEDSKWRVRLAII  449 (615)
Q Consensus       407 -------------------~i~~~l~~l~~~~~~~~~~---~~l~--~~~i~~~-------------~~~~~~~vr~~~~  449 (615)
                                         .+++.+..+...+|..+-.   +...  ...+...             .......+...++
T Consensus       564 ~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  643 (888)
T d1qbkb_         564 MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL  643 (888)
T ss_dssp             HHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence                               0112222233333332211   0000  0011110             1123455666778


Q ss_pred             HHhHHHHhhhChHhH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCCchHH
Q psy14014        450 EYMPLLAGQLGVEFF----DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQNYLHR  523 (615)
Q Consensus       450 ~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~R  523 (615)
                      ..+..+++.+|..+.    ...+++.+...+.|.+..+|..|..+++.++..++...  +.+.++|.+...+.++.+.+|
T Consensus       644 ~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~  723 (888)
T d1qbkb_         644 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC  723 (888)
T ss_dssp             HHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence            888888888876531    12478888889999999999999999999999877643  345688888888999999999


Q ss_pred             HHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCC--chHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcCCC
Q psy14014        524 MTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNV--ANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNGDT  596 (615)
Q Consensus       524 ~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~--~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d~  596 (615)
                      .++++++|.++...+..+  +.+.+++.|.+.+++++  .+|+.+++.+++++....+..   ...+.+.+.+..|..-.
T Consensus       724 ~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~  803 (888)
T d1qbkb_         724 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR  803 (888)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC
Confidence            999999999998877543  34567777777776544  459999999999998776532   34445566667775545


Q ss_pred             CccHHHHHHHHHHHHh
Q psy14014        597 DVDVKYFAQEAISSIA  612 (615)
Q Consensus       597 d~~v~~~a~~a~~~~~  612 (615)
                      |.+-+..|..++..+-
T Consensus       804 d~~ek~~~~~g~~~~i  819 (888)
T d1qbkb_         804 DNEEKDSAFRGICTMI  819 (888)
T ss_dssp             CSHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHH
Confidence            5666777777765543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-24  Score=247.59  Aligned_cols=596  Identities=13%  Similarity=0.157  Sum_probs=419.7

Q ss_pred             cchHHHHHHHhcCccHHHHHHHHhcHHHHHHHh---CcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcch
Q psy14014         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALAL---GQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEY   87 (615)
Q Consensus        12 ~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~   87 (615)
                      -+.|+.++++|.|+|++.|.+|++.|...-..-   ..+.....+++.+.+.++|.+ +||..|.+||+.++..+. ++.
T Consensus         2 ~~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~-~~~   80 (1207)
T d1u6gc_           2 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQ   80 (1207)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHH
T ss_pred             chhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc-Hhh
Confidence            467999999999999999999998887764211   122355678888888899888 599999999999998765 455


Q ss_pred             hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--------HHhhhHHHHHHHhhcC-CCcchhhhHHhhhhhhcc
Q psy14014         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--------DLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYP  158 (615)
Q Consensus        88 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~l~~~-~~~~~r~~a~~~l~~~~~  158 (615)
                      ...+++.|...+.+++..+|..+..+++.+...++..        .....+++.+...... .+..+|..++.++..+..
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            6777887777777888899999999999988877642        2223455555444433 456788888887777655


Q ss_pred             CCCh---hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHh
Q psy14014        159 RVTA---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  235 (615)
Q Consensus       159 ~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~  235 (615)
                      ..+.   .....+++.+...+.++++.||+.++.+++.++...+.+.....+-..+..+.++.+..+|..++.+++.+++
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~  240 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR  240 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            5432   3456788888888999999999999999999998877654333333344455567788899999999999999


Q ss_pred             hcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhh------------------
Q psy14014        236 LLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLL------------------  293 (615)
Q Consensus       236 ~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l------------------  293 (615)
                      ..|..  .+.+.++|.+.+.+.+.+..+|..+..++..+....+.+..  ...+++.+...+                  
T Consensus       241 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~  320 (1207)
T d1u6gc_         241 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM  320 (1207)
T ss_dssp             HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred             HcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhh
Confidence            88763  23456899999999999999999999999999887765432  123333332222                  


Q ss_pred             -------------------cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhh
Q psy14014        294 -------------------KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL  354 (615)
Q Consensus       294 -------------------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l  354 (615)
                                         .|..+.+|..+++.+..++...+...  ..+.+.++|.+...+.|.++.||..+..++..+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l--~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l  398 (1207)
T d1u6gc_         321 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML--PEFYKTVSPALISRFKEREENVKADVFHAYLSL  398 (1207)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTH--HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred             hhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence                               24457899999999999887655332  245677899999999999999999999998887


Q ss_pred             chhhcc---------------------hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh---HHHHHH-HHH
Q psy14014        355 SPILGK---------------------HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ---QWRVRL-AII  409 (615)
Q Consensus       355 ~~~~g~---------------------~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~-~i~  409 (615)
                      ....+.                     ....+.+++.+.+.+.+.+..+|..++..+..+....+..   ...... .+.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~  478 (1207)
T d1u6gc_         399 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGII  478 (1207)
T ss_dssp             HHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHH
T ss_pred             HHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHH
Confidence            654321                     1123456777778888999999999999888776554321   111100 000


Q ss_pred             -----------------hhhhhhhhccccchhh---hhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--------
Q psy14014        410 -----------------EYMPLLAGQLGVEFFD---EKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--------  461 (615)
Q Consensus       410 -----------------~~l~~l~~~~~~~~~~---~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--------  461 (615)
                                       .++..+....+...+.   ..+. +.+.....++.++++..++..+..+...++.        
T Consensus       479 ~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~  557 (1207)
T d1u6gc_         479 FSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV-PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFD  557 (1207)
T ss_dssp             HHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhh-hhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhh
Confidence                             1111111111112121   1122 4566677889999999999999988876642        


Q ss_pred             -HhHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhh
Q psy14014        462 -EFFDEKLNALCMTWLV--DHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEA  536 (615)
Q Consensus       462 -~~~~~~l~~~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~  536 (615)
                       ..+...+++.++..+.  +...++|..++.+++.+...+|...  ....+++.+.+.+.+  ...|..++.+++.++..
T Consensus       558 ~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~--~~~r~~a~~~l~~i~~~  635 (1207)
T d1u6gc_         558 ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGS  635 (1207)
T ss_dssp             CHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHh
Confidence             1234556666666654  5678899999999999998876542  223456666665544  44788999999988765


Q ss_pred             hChh---hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcCCCCccHHHHHHHHHHH
Q psy14014        537 CGPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNGDTDVDVKYFAQEAISS  610 (615)
Q Consensus       537 ~~~~---~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~  610 (615)
                      ....   .+...+.+.+...+.+.+..+|..+..++..+...++..   ...+.+.+.+..+.+|.|..++..+..++..
T Consensus       636 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~  715 (1207)
T d1u6gc_         636 PLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTT  715 (1207)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHH
Confidence            4332   234567788888899999999999999999998876543   2233444555556799999999999988887


Q ss_pred             Hhh
Q psy14014        611 IAD  613 (615)
Q Consensus       611 ~~~  613 (615)
                      +..
T Consensus       716 l~~  718 (1207)
T d1u6gc_         716 LAK  718 (1207)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.1e-23  Score=227.45  Aligned_cols=595  Identities=13%  Similarity=0.083  Sum_probs=407.3

Q ss_pred             HHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCCCCC--cchhhhc
Q psy14014         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGG--PEYVHCL   91 (615)
Q Consensus        16 ~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~~~~--~~~~~~l   91 (615)
                      ..++..+.++++.+|..+...++.++..-.++..|++++|.+.+.+.+++  .+|..+..+|+.+.+..+.  ..+...+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34567788999999999999999999876666679999999988876544  4888888899887754432  2222333


Q ss_pred             hHHH----hhhh-cCchhHHHHHHHHHHHHHHhhcChh----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh
Q psy14014         92 LPPL----ESLA-TVEETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (615)
Q Consensus        92 ~~~l----~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  162 (615)
                      .+++    ..+. .+.+..+|..++.++..+...++..    .....+++.+.....+++..+|..+...+..++....+
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3332    2222 3456899999999999988877542    23345777787888888888999988888777655443


Q ss_pred             hhH----HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-------------------hhhHhhhHHHHHHhhc---
Q psy14014        163 GVK----AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-------------------DYLKTDIIPMFVNLAQ---  216 (615)
Q Consensus       163 ~~~----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~~---  216 (615)
                      ...    +.+.........+.++.+|..+++.+..++.....                   ......++|.+...+.   
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~  337 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333    33444456677889999999999998887764321                   1122345565555543   


Q ss_pred             ----cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHHHH
Q psy14014        217 ----DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQAF  289 (615)
Q Consensus       217 ----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l  289 (615)
                          ++++.+|..+..++..++...+++ ..+.+.+.+.....+++|..|.++...++.++...+...   ..+.+++.+
T Consensus       338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  416 (861)
T d2bpta1         338 EDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence                234578999999999998888765 466778888889999999999999999998876554332   235788999


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch---hh---
Q psy14014        290 QMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH---NT---  363 (615)
Q Consensus       290 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~---~~---  363 (615)
                      ...+.|+++.||..++.+++.++..++...........+++.+.....+ ++.++..++.++..+.......   ..   
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  495 (861)
T d2bpta1         417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHH
Confidence            9999999999999999999999998765543333455666666665544 6778887777777776554431   12   


Q ss_pred             hhhhHHHHHHhhc--CCChhHHHHHHHhhhHhhhhhchhHHHHHHH----------------------------------
Q psy14014        364 VDHLLPLFLSQLK--DECPEVRLNIISNLDCVNEVIGIQQWRVRLA----------------------------------  407 (615)
Q Consensus       364 ~~~l~p~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~----------------------------------  407 (615)
                      ...+++.+.....  +.+..++..+..++..+....+.........                                  
T Consensus       496 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  575 (861)
T d2bpta1         496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            2233444444433  3456788888888887766554321100000                                  


Q ss_pred             HHhhhhhhhhccccch--hhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcchH
Q psy14014        408 IIEYMPLLAGQLGVEF--FDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVYA  482 (615)
Q Consensus       408 i~~~l~~l~~~~~~~~--~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~  482 (615)
                      +...+..+....+..+  +.+.+. +.+.+.+. ..++.+|+.++.+++.++..+|.++  +.+.++|.+...+.+.+..
T Consensus       576 ~~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~  654 (861)
T d2bpta1         576 ILTVLAAVIRKSPSSVEPVADMLM-GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP  654 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHH-HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHH-HHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHH
Confidence            0001111111111111  111111 23444443 4567799999999999999998765  5578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCC--CchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCC
Q psy14014        483 IREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGD  556 (615)
Q Consensus       483 vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D  556 (615)
                      +|..|+.+++.++..++...  +.+.+++.+.+.++++  ++.+|..++.++|.++...|+.+  +.+.++|.+.+.+..
T Consensus       655 v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~  734 (861)
T d2bpta1         655 VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT  734 (861)
T ss_dssp             HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999887643  3456888888887765  45789999999999998888654  346778877776543


Q ss_pred             CC-----------chHHHHHHHHHHHHhHhhh--hhhHHhhHH---HHHhhhcCC----CCccHHHHHHHHHHHHhh
Q psy14014        557 NV-----------ANVRFNVAKTLQKIGPILE--TNVIQSQVK---PALDKLNGD----TDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       557 ~~-----------~~vr~~a~~~l~~l~~~~~--~~~~~~~~~---~~l~~l~~d----~d~~v~~~a~~a~~~~~~  613 (615)
                      ..           ..+|..++.++..++....  +....+.+.   +.+..+..|    .+.+++..+...++.+.+
T Consensus       735 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~  811 (861)
T d2bpta1         735 KPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHH
Confidence            22           2478888999888876543  222333333   444444444    467888888888888764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.3e-25  Score=242.28  Aligned_cols=578  Identities=11%  Similarity=0.082  Sum_probs=396.7

Q ss_pred             HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcc--hhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCC--cchhh
Q psy14014         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE--RTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGG--PEYVH   89 (615)
Q Consensus        15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~--~~~~~   89 (615)
                      +..++..++++++.+|..|++.+.......+..  ...+.+++.+.....+++ +||..++++|..+++....  ..+..
T Consensus       174 l~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~  253 (888)
T d1qbkb_         174 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH  253 (888)
T ss_dssp             THHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTT
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            446677788899999999999887765433221  133456666666667766 4999999999998875432  24556


Q ss_pred             hchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-hHHhh---hHHHHHHH-----------------------------
Q psy14014         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDLEA---HFVPLVQR-----------------------------  136 (615)
Q Consensus        90 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~---~~l~~l~~-----------------------------  136 (615)
                      .+++.+.....|+++.||..|++.+..+++.-.. ....+   .++|.+..                             
T Consensus       254 ~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  333 (888)
T d1qbkb_         254 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDI  333 (888)
T ss_dssp             TTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGC
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHH
Confidence            6777766777888999999999877666543110 00000   11111100                             


Q ss_pred             ----------------------------hhcC---CCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHH
Q psy14014        137 ----------------------------LASG---DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRR  185 (615)
Q Consensus       137 ----------------------------l~~~---~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~  185 (615)
                                                  ...+   ..+..|..+..++..+....++...+.+++.+...+.+++|.+|.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~re  413 (888)
T d1qbkb_         334 RPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKE  413 (888)
T ss_dssp             CCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHH
Confidence                                        0000   123568888888888888888888889999999999999999999


Q ss_pred             HHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHhcCCCChH
Q psy14014        186 AAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQCSGDTSWR  260 (615)
Q Consensus       186 ~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~  260 (615)
                      +++.++|.+++....  ....+.++|.+...++|+++.||..+..+++.+++.+..   +.+...+++.+...+.|++++
T Consensus       414 aa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~  493 (888)
T d1qbkb_         414 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR  493 (888)
T ss_dssp             HHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHH
T ss_pred             HHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHH
Confidence            999999998865433  234567889999999999999999999999999886654   234456888888889999999


Q ss_pred             HHHHHHHHHHHHHHHhCccch--hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-
Q psy14014        261 VRYMVADKFTDLQKAVGPEIT--KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-  337 (615)
Q Consensus       261 vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-  337 (615)
                      ||.+++.+|..+....+....  .+.+++.+...+++.....+..+..+++.++...+.......+.+.++|.+....+ 
T Consensus       494 V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  573 (888)
T d1qbkb_         494 VQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM  573 (888)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence            999999999999988776643  45788888888988888888888888888887766554444566777777766443 


Q ss_pred             --CCCHHHHHHHHHHHHhhchhhcchh--hhhhhHHHHHHhh-----------------cCCChhHHHHHHHhhhHhhhh
Q psy14014        338 --DPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQL-----------------KDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       338 --d~~~~vR~~~~~~l~~l~~~~g~~~--~~~~l~p~l~~~l-----------------~d~~~~vr~~a~~~l~~l~~~  396 (615)
                        +.+ ..+..+.+++..++...|...  +...+.+.+.+.+                 ...+.++...++..++.+.+.
T Consensus       574 ~~~~~-~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~  652 (888)
T d1qbkb_         574 LKDED-KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG  652 (888)
T ss_dssp             SCTTC-TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred             cccch-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHH
Confidence              222 233455677777766665421  1111122111111                 112234444455555554444


Q ss_pred             hchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHH
Q psy14014        397 IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMT  474 (615)
Q Consensus       397 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~  474 (615)
                      .+... .+.      +           ....+. +.+...+++.++.+|+.++..++.++...+..+  +.+.+++.+.+
T Consensus       653 l~~~~-~~~------~-----------~~~~l~-~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~  713 (888)
T d1qbkb_         653 LGGNI-EQL------V-----------ARSNIL-TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGT  713 (888)
T ss_dssp             HTTTT-HHH------H-----------HTSCHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred             hhhhh-hhh------h-----------hHhhHH-HHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            43211 000      0           000111 566777889999999999999999998777643  56789999999


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCC--chHHHHHHHHHHHHHhhhChhh--HHHhhHH
Q psy14014        475 WLVDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQN--YLHRMTCLFCINVLAEACGPTV--TANFLLP  548 (615)
Q Consensus       475 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~  548 (615)
                      .+.++...++..|+.++|.++...|.++  +.+.+++.|...+++++  ..++.+++.|+|.++..++...  +.+.+++
T Consensus       714 ~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~  793 (888)
T d1qbkb_         714 NLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR  793 (888)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHH
T ss_pred             HhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHH
Confidence            9999999999999999999999988653  33568888888887764  4488999999999998766543  3455666


Q ss_pred             HHHhhCCC-CCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc--CCCCccHHHHHHHHHHHHhh
Q psy14014        549 TVLNMAGD-NVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN--GDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       549 ~l~~~~~D-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~--~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+...+.+ .+.+-+..+...+..++...++. ..+.+..++....  .++.+++++.....+..++.
T Consensus       794 ~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~  860 (888)
T d1qbkb_         794 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSG-VIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKN  860 (888)
T ss_dssp             HHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGG-TGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHHHHCcHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            55554433 45566778888888888754432 2344444444432  34567788887777766543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.7e-21  Score=215.10  Aligned_cols=542  Identities=13%  Similarity=0.122  Sum_probs=364.2

Q ss_pred             cchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCc-hhHHHHHHHHHHHHHHhhcChh--HHh
Q psy14014         52 ELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPH--DLE  127 (615)
Q Consensus        52 ~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~--~~~  127 (615)
                      .+...+.+.+.+++ .+|..++.+++.+++.-.....|+.+++.|.+.+.++ ...+|..++.++..+++..++.  .+.
T Consensus        95 ~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~  174 (861)
T d2bpta1          95 QIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV  174 (861)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33333444445555 4999999999998764222346889999887776554 4678999999999998877642  122


Q ss_pred             hhH----HHHHHHhhc-CCCcchhhhHHhhhhhhccCCCh-----hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHH
Q psy14014        128 AHF----VPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTA-----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV  197 (615)
Q Consensus       128 ~~~----l~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~  197 (615)
                      +.+    ...+..+.. +.+..+|..+...+..+......     .....+++.+...++++++.+|..+++++..+++.
T Consensus       175 ~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~  254 (861)
T d2bpta1         175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK  254 (861)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            222    222333333 34567898888888877666543     23456778888889999999999999999999987


Q ss_pred             hchhh--hH-hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-------------------hhHHHhHHHHHHHhc-
Q psy14014        198 VEVDY--LK-TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-------------------SDVEQLVMPTLRQCS-  254 (615)
Q Consensus       198 ~~~~~--~~-~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~-  254 (615)
                      .+...  .. ..+.++.....++.++.+|..+++.+..+++....                   ......++|.+.+.+ 
T Consensus       255 ~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~  334 (861)
T d2bpta1         255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT  334 (861)
T ss_dssp             HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76522  12 22334455666788999999999998887654321                   112234555555544 


Q ss_pred             ------CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhh
Q psy14014        255 ------GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYI  328 (615)
Q Consensus       255 ------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  328 (615)
                            .+.+|..|..+..++..++...+... .+.+.+.+.....+.++..|.++..+++.+......... ..+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~~~l~~~  412 (861)
T d2bpta1         335 RQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR-TYYVHQA  412 (861)
T ss_dssp             CCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHH
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhH-HHHHHHH
Confidence                  23568899999999999998887653 456677788888999999999999999998876544322 2456788


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh----hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014        329 LPYVKDLVADPNQHVKSALASVIMGLSPILGKHN----TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV  404 (615)
Q Consensus       329 ~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~----~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  404 (615)
                      +|.+.+.+.|+++.||.+++.+++.+++.++...    ..+.+++.+.....+ ++.++..+..++..+.......... 
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-  490 (861)
T d2bpta1         413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPS-  490 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSC-
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccc-
Confidence            9999999999999999999999999988776532    234455555555544 5677777777666555433211000 


Q ss_pred             HHHHHhhhhhhhhccccchhhhhhhhHHHHHhh--hcCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHh----c
Q psy14014        405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA--EDSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTW----L  476 (615)
Q Consensus       405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~----l  476 (615)
                                   . ...++...+  ..+....  .+..+.+|..+..++..+....+...  +...+.+.+...    +
T Consensus       491 -------------~-~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~  554 (861)
T d2bpta1         491 -------------P-IYNFYPALV--DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTM  554 (861)
T ss_dssp             -------------G-GGGGHHHHH--HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             -------------h-hhHHHhhHH--HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0 001111111  1222222  24567799999999999988877643  223333333322    2


Q ss_pred             CC-----------cchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhChhh-
Q psy14014        477 VD-----------HVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPTV-  541 (615)
Q Consensus       477 ~d-----------~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~~~-  541 (615)
                      ..           ....++.....+++.+...++...  +.+.+++.+.+.+.+ ++..+|..++.+++.++...++.+ 
T Consensus       555 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~  634 (861)
T d2bpta1         555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE  634 (861)
T ss_dssp             TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence            21           123456666677777777665432  234566777776554 466789999999999998887754 


Q ss_pred             -HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHhh
Q psy14014        542 -TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       542 -~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~~  613 (615)
                       +.+.++|.+...++|.++.||..++.+++.+....+..   +..+.+..++..+. .+.+.++|..+..+++.++.
T Consensus       635 ~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         635 KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence             45779999999999999999999999999998776542   22223333334443 33467899999999998865

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-21  Score=220.11  Aligned_cols=546  Identities=12%  Similarity=0.062  Sum_probs=372.5

Q ss_pred             cCCcH-HHHHHHHHHhccccCC--C-CCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHH
Q psy14014         61 IYDED-EVLLALAEQLGTFTPN--V-GGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR  136 (615)
Q Consensus        61 ~~~~~-~vr~~a~~~l~~l~~~--~-~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~  136 (615)
                      +.+.| .+|.+|...|.+....  . .+++....+++.+..++.|++++||..|++++..++..++++... .+++.+..
T Consensus        12 ~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~-~l~~~L~~   90 (1207)
T d1u6gc_          12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-TIVDTLCT   90 (1207)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-HHHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH-HHHHHHHH
Confidence            45656 5999998777664431  1 124445678888888999999999999999999999999876543 45566655


Q ss_pred             hhcCCCcchhhhHHhhhhhhccCCC---------hhhHHHHHHHHHHHh-CCCChHHHHHHHHhHHHHHHHhchh--hhH
Q psy14014        137 LASGDWFTSRTSACGLFSVCYPRVT---------AGVKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVD--YLK  204 (615)
Q Consensus       137 l~~~~~~~~r~~a~~~l~~~~~~~~---------~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~  204 (615)
                      ...+++...|..+...+..+...++         ......+.+.+.... ...++.+|..++..++.+....|..  ...
T Consensus        91 ~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~  170 (1207)
T d1u6gc_          91 NMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH  170 (1207)
T ss_dssp             HTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH
T ss_pred             HhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH
Confidence            5556666677666655554433221         233455555555544 4578899999999999999988752  335


Q ss_pred             hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccch--h
Q psy14014        205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEIT--K  282 (615)
Q Consensus       205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~  282 (615)
                      ..+++.+...++++++.||+.|+.+++.++..++.+.+...+-..+..+..+.++.+|..++.+++.++...|....  .
T Consensus       171 ~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l  250 (1207)
T d1u6gc_         171 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL  250 (1207)
T ss_dssp             HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHH
Confidence            67888888899999999999999999999998887654444444444556677788899999999999988776532  3


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH-----------------------------
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK-----------------------------  333 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~-----------------------------  333 (615)
                      +.++|.+.+.+.++++++|..++.++..++..++.+...  +...+++.+.                             
T Consensus       251 ~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~  328 (1207)
T d1u6gc_         251 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD  328 (1207)
T ss_dssp             TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCCC-----------------------
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhh--hHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchh
Confidence            589999999999999999999999999999887655321  1222222221                             


Q ss_pred             --------HhhCCCCHHHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHH
Q psy14014        334 --------DLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWR  403 (615)
Q Consensus       334 --------~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  403 (615)
                              ....|.+|++|..+++++..+....+.  ..+.+.++|.+.+.+.|.++.||..++.++..+....+.....
T Consensus       329 ~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~  408 (1207)
T d1u6gc_         329 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW  408 (1207)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred             hhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhh
Confidence                    123567899999999999998876554  3345678999999999999999999999998887654321110


Q ss_pred             HHH-HHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChH--hHHHHHHHHHHHhcCCc-
Q psy14014        404 VRL-AIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNALCMTWLVDH-  479 (615)
Q Consensus       404 ~~~-~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-  479 (615)
                      ... ...+........ ...+.+..+  +.+.+.+.+.+..+|..++..+..++...+..  .+...+++.+...+.+. 
T Consensus       409 ~~~~~~~~~~~~~~~~-l~~~~~~i~--~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~  485 (1207)
T d1u6gc_         409 LCDPDAMEQGETPLTM-LQSQVPNIV--KALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS  485 (1207)
T ss_dssp             ---------CCCHHHH-HHHHTTHHH--HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS
T ss_pred             hhchHHHHhhcchHHH-HHHHhHHHH--HHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhccc
Confidence            000 000000000000 000011111  45666778889999999999999998877643  24466777788877765 


Q ss_pred             -chHHHHHHHHHHHHHHHHhChHHh---hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh---------hHHHhh
Q psy14014        480 -VYAIREAATLNLKKLVEQFGSEWA---QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT---------VTANFL  546 (615)
Q Consensus       480 -~~~vR~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~i  546 (615)
                       ...+|..++.++..+....+++.+   ...+.+.+.....++++.++..++.+++.+....++.         .+...+
T Consensus       486 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l  565 (1207)
T d1u6gc_         486 SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL  565 (1207)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHH
Confidence             456899999999999987765433   3457888888899999999999999999988765431         123344


Q ss_pred             HHHHHhhC--CCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh-cCCCCccHHHHHHHHHHHHhh
Q psy14014        547 LPTVLNMA--GDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL-NGDTDVDVKYFAQEAISSIAD  613 (615)
Q Consensus       547 ~~~l~~~~--~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l-~~d~d~~v~~~a~~a~~~~~~  613 (615)
                      .+.+...+  .|.+.++|..+..+++.+....+... ...+..++..+ ..-.++..|..+..++..++.
T Consensus       566 ~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~  634 (1207)
T d1u6gc_         566 FTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL-GSDLPNTLQIFLERLKNEITRLTTVKALTLIAG  634 (1207)
T ss_dssp             HHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC-CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            55554443  46778899999999999987765321 12222222222 112345678888888887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-20  Score=206.35  Aligned_cols=555  Identities=12%  Similarity=0.099  Sum_probs=380.8

Q ss_pred             HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH---HHHHHHHHHhccccCCCCC---cchhhh
Q psy14014         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED---EVLLALAEQLGTFTPNVGG---PEYVHC   90 (615)
Q Consensus        17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~vr~~a~~~l~~l~~~~~~---~~~~~~   90 (615)
                      .++..+.+++. .|..++..++.++..-.|...|++++|.+.+.+.+++   .+|..+..+|+.+.+....   ..+.+.
T Consensus        94 ~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~  172 (876)
T d1qgra_          94 YVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (876)
T ss_dssp             HHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             HHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            45566777664 5667788888888765454479999999988765433   3888888898887654432   345566


Q ss_pred             chHHHhhhhcC--chhHHHHHHHHHHHHHHhhcChh----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh
Q psy14014         91 LLPPLESLATV--EETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (615)
Q Consensus        91 l~~~l~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~  164 (615)
                      +++.+.+.+.+  .+..+|..++.++..........    .....+++.+.....+++..+|..++..+..+.....+..
T Consensus       173 il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            77777666643  35689999999998887776542    3344577778888888888899999988887766555443


Q ss_pred             H----HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-----------------------hhhHhhhHHHHHHhhc-
Q psy14014        165 K----AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-----------------------DYLKTDIIPMFVNLAQ-  216 (615)
Q Consensus       165 ~----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----------------------~~~~~~ll~~l~~~~~-  216 (615)
                      .    +.+.+.+.....+....++..+++.+..++.....                       ......+.|.+..... 
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            3    33555666777888999999999888777753211                       1123345566555543 


Q ss_pred             ------cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHH
Q psy14014        217 ------DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQ  287 (615)
Q Consensus       217 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~  287 (615)
                            ++++.+|.+|..++..++...+.+ ..+.++|.+.+.+.+++|+.|.+++..++.+........   ....+++
T Consensus       333 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~  411 (876)
T d1qgra_         333 QDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP  411 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence                  234569999999999999888764 467789999999999999999999999988765443322   2346888


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-------
Q psy14014        288 AFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-------  360 (615)
Q Consensus       288 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-------  360 (615)
                      .+...+.|+++.||.+++.+++.+++.+++......+...+++.+...+++ ++.++..++.++..+......       
T Consensus       412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~  490 (876)
T d1qgra_         412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADD  490 (876)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999998766543334466677777776655 789999999988887654221       


Q ss_pred             ---------hhhhhhhHHHHHHhhcCC---ChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhh
Q psy14014        361 ---------HNTVDHLLPLFLSQLKDE---CPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKL  428 (615)
Q Consensus       361 ---------~~~~~~l~p~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l  428 (615)
                               ..+.+.+++.+...+.+.   +..++..+++.+..+............   .++++.+.            
T Consensus       491 ~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~------------  555 (876)
T d1qgra_         491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAV---QKTTLVIM------------  555 (876)
T ss_dssp             CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHH---HHHHHHHH------------
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHH---HHHHHHHH------------
Confidence                     122445667777776542   456888888888777655433211111   01111111            


Q ss_pred             hhHHHHHhhhc----CC-------chHHHHHHHHhHHHHhhhChHhH---HHHHHHHHHHhcC--CcchHHHHHHHHHHH
Q psy14014        429 NALSIVELAED----SK-------WRVRLAIIEYMPLLAGQLGVEFF---DEKLNALCMTWLV--DHVYAIREAATLNLK  492 (615)
Q Consensus       429 ~~~~i~~~~~~----~~-------~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~--d~~~~vR~~a~~~l~  492 (615)
                        +.+...+..    ..       ...+...+..+..+....|.+.+   .+.+++.+.+.+.  +++..+++.++.+++
T Consensus       556 --~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~  633 (876)
T d1qgra_         556 --ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS  633 (876)
T ss_dssp             --HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence              111111110    11       12333455566666666666543   3567788877765  346789999999999


Q ss_pred             HHHHHhChHH--hhhchhHHHHhhhcCC-CchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCC--CchHHHHH
Q psy14014        493 KLVEQFGSEW--AQSTVIPKVVAMSRDQ-NYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDN--VANVRFNV  565 (615)
Q Consensus       493 ~l~~~~~~~~--~~~~i~~~l~~~~~d~-~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~--~~~vr~~a  565 (615)
                      .++..+|..+  +.+.++|.+...+++. ++.+|..++.+++.+....+...  +.+.+++.+.+.++++  +.++|..+
T Consensus       634 ~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~  713 (876)
T d1qgra_         634 TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQI  713 (876)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHH
Confidence            9999888753  3356888888877665 57799999999999987766543  3466777777777664  46799999


Q ss_pred             HHHHHHHhHhhhhh--hHHhhHHHHHhh
Q psy14014        566 AKTLQKIGPILETN--VIQSQVKPALDK  591 (615)
Q Consensus       566 ~~~l~~l~~~~~~~--~~~~~~~~~l~~  591 (615)
                      +.+++.++...|..  .+.+.+.+.+..
T Consensus       714 ~~~i~~i~~~~~~~~~~yl~~~l~~l~~  741 (876)
T d1qgra_         714 LSVFGDIALAIGGEFKKYLEVVLNTLQQ  741 (876)
T ss_dssp             HHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            99999999887753  223444444444

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-20  Score=204.67  Aligned_cols=552  Identities=13%  Similarity=0.111  Sum_probs=365.4

Q ss_pred             hhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHH
Q psy14014         49 TRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPHDL  126 (615)
Q Consensus        49 ~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~  126 (615)
                      .+..+...+.+.+.+++.+|+.++.+++.++..--+.+.|+.++|.+.+.+.++  ...+|..++.++..+++.+.++.+
T Consensus        87 ~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~  166 (876)
T d1qgra_          87 ARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence            444555555555555555666677888877653222345888999888776554  467899999999999988877555


Q ss_pred             hh---hHHHHHHHhhcCC--CcchhhhHHhhhhhhccCCC-----hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHH
Q psy14014        127 EA---HFVPLVQRLASGD--WFTSRTSACGLFSVCYPRVT-----AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK  196 (615)
Q Consensus       127 ~~---~~l~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  196 (615)
                      ..   .+++.+.....++  ...+|..+...+........     ......+++.+...++++++++|..+++++..+++
T Consensus       167 ~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~  246 (876)
T d1qgra_         167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            43   3566665555433  45688888877766555443     23456677888888999999999999999999998


Q ss_pred             Hhchhh---hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-----------------------hhHHHhHHHHH
Q psy14014        197 VVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-----------------------SDVEQLVMPTL  250 (615)
Q Consensus       197 ~~~~~~---~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-----------------------~~~~~~l~~~l  250 (615)
                      ..+...   ....+.+.+....++..+.++..++..+..+++....                       ....+.++|.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  326 (876)
T d1qgra_         247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (876)
T ss_dssp             HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            776532   2345667777777888899999999988887653211                       12234456666


Q ss_pred             HHhc-------CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHH
Q psy14014        251 RQCS-------GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI  323 (615)
Q Consensus       251 ~~~~-------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  323 (615)
                      ...+       .+.+|.+|.++..++..++...+.+. .+.+++.+.+.+.+.++..|.++...++.+......... ..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~-~~  404 (876)
T d1qgra_         327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL-KP  404 (876)
T ss_dssp             HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HH
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHH-HH
Confidence            5543       24567899999999999998887654 467888889999999999999999999887765443322 24


Q ss_pred             HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch
Q psy14014        324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI  399 (615)
Q Consensus       324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  399 (615)
                      +...++|.+...++|+++.||.+++.+++.+++.++.    ..+.+.+++.+.+.+.+ ++.|+..++.++..+.+....
T Consensus       405 ~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~  483 (876)
T d1qgra_         405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYE  483 (876)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999887654    23355667777777765 688999888888766543211


Q ss_pred             hHHHHHHHHHhhhhhhhhccc---cchhhhhhhhHHHHHhhhc---CCchHHHHHHHHhHHHHhhhChHh------HHHH
Q psy14014        400 QQWRVRLAIIEYMPLLAGQLG---VEFFDEKLNALSIVELAED---SKWRVRLAIIEYMPLLAGQLGVEF------FDEK  467 (615)
Q Consensus       400 ~~~~~~~~i~~~l~~l~~~~~---~~~~~~~l~~~~i~~~~~~---~~~~vr~~~~~~l~~l~~~~~~~~------~~~~  467 (615)
                      .        ...+........   ..++...+  +.+...+.+   ....+|..+++.+..+......+.      +...
T Consensus       484 ~--------~~~~~~~~~~~~~~l~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  553 (876)
T d1qgra_         484 A--------ADVADDQEEPATYCLSSSFELIV--QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLV  553 (876)
T ss_dssp             T--------TSCTTSCCCCCCCSSTTTHHHHH--HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred             H--------HHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            0        000110000000   12222222  344444432   356688888888888776554322      1223


Q ss_pred             HHHHHHHhcCCc-----------chHHHHHHHHHHHHHHHHhChHHh---hhchhHHHHhhhc--CCCchHHHHHHHHHH
Q psy14014        468 LNALCMTWLVDH-----------VYAIREAATLNLKKLVEQFGSEWA---QSTVIPKVVAMSR--DQNYLHRMTCLFCIN  531 (615)
Q Consensus       468 l~~~l~~~l~d~-----------~~~vR~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~--d~~~~~R~~a~~~l~  531 (615)
                      +++.+...+...           ....+.....++..+....+....   .+.+++.+.+.+.  +++..+|..++.+++
T Consensus       554 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~  633 (876)
T d1qgra_         554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS  633 (876)
T ss_dssp             HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence            334333333211           122333444455555555554322   2346677777654  356778999999999


Q ss_pred             HHHhhhChhh--HHHhhHHHHHhhCCCC-CchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcCC-CCccHHHHH
Q psy14014        532 VLAEACGPTV--TANFLLPTVLNMAGDN-VANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNGD-TDVDVKYFA  604 (615)
Q Consensus       532 ~l~~~~~~~~--~~~~i~~~l~~~~~D~-~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d-~d~~v~~~a  604 (615)
                      .++...+..+  +.+.++|.+.+.+++. ++++|..++..++.+....+..   +....+..++..+.++ -+.++|..+
T Consensus       634 ~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~  713 (876)
T d1qgra_         634 TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQI  713 (876)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHH
Confidence            9998877654  4577888888877654 4679999999999888665532   2233334444444322 257899999


Q ss_pred             HHHHHHHhh
Q psy14014        605 QEAISSIAD  613 (615)
Q Consensus       605 ~~a~~~~~~  613 (615)
                      ..|++.++.
T Consensus       714 ~~~i~~i~~  722 (876)
T d1qgra_         714 LSVFGDIAL  722 (876)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.2e-19  Score=179.37  Aligned_cols=278  Identities=15%  Similarity=0.146  Sum_probs=171.3

Q ss_pred             cchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcC--chhHHHHHHHHHHHHHHhhcChhHHhhh
Q psy14014         52 ELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATV--EETVVRDKAVESLRLISAQHSPHDLEAH  129 (615)
Q Consensus        52 ~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~  129 (615)
                      +++..+.++++.++++|..|.+.|..+...     ..+.++..+...+.+  .+..+|..|+..+++......+......
T Consensus         1 el~~il~~~~s~d~~~r~~A~~~L~~~~~~-----~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~   75 (458)
T d1ibrb_           1 ELITILEKTVSPDRLELEAAQKFLERAAVE-----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   75 (458)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             CHHHHHHHHhCcCHHHHHHHHHHHHHHHhc-----CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence            355667777777677888888888776541     122333333333333  3467888888877776554432211110


Q ss_pred             HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHH
Q psy14014        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP  209 (615)
Q Consensus       130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~  209 (615)
                                              ...+..++++.+..+.+.+.+.+.+++..+| .++..++.++....+...|+.+++
T Consensus        76 ------------------------~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~  130 (458)
T d1ibrb_          76 ------------------------QQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIP  130 (458)
T ss_dssp             ------------------------HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHH
T ss_pred             ------------------------hhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhH
Confidence                                    0112234566677777777777777765444 566777777766555555777888


Q ss_pred             HHHHhhcc--CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHH
Q psy14014        210 MFVNLAQD--EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQ  287 (615)
Q Consensus       210 ~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  287 (615)
                      .+.+.+.+  ..+.++..++.++..+...........                                    ....+++
T Consensus       131 ~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~------------------------------------~~~~il~  174 (458)
T d1ibrb_         131 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD------------------------------------KSNEILT  174 (458)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG------------------------------------GHHHHHH
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhh------------------------------------hHHHHHH
Confidence            77777654  334566677777766665554432111                                    1123444


Q ss_pred             HHHHhhc--CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch---h
Q psy14014        288 AFQMLLK--DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH---N  362 (615)
Q Consensus       288 ~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~---~  362 (615)
                      .+.+.+.  +...++|..+++++..+................+.+.+...++++++++|..++.++..+++..+..   .
T Consensus       175 ~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  254 (458)
T d1ibrb_         175 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY  254 (458)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT
T ss_pred             HHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4444443  2345677777777776665543322222345567788888999999999999999999998776542   2


Q ss_pred             hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        363 TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       363 ~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      ..+.+.+.+.....+.+++++..++..+..+.+
T Consensus       255 l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         255 MGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            223344556666778889999999988877654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.4e-16  Score=157.93  Aligned_cols=392  Identities=15%  Similarity=0.121  Sum_probs=272.6

Q ss_pred             HHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC--chhHHHHHHHHHHHHHhhcCh------------
Q psy14014        174 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE--QDSVRLLAVEACVSIASLLSQ------------  239 (615)
Q Consensus       174 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~------------  239 (615)
                      .-+.+++.++|+.|-+.+..+.+.-+     +..++.+...+.+.  ...+|..|...+.........            
T Consensus         7 ~~~~s~d~~~r~~A~~~L~~~~~~~~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~   81 (458)
T d1ibrb_           7 EKTVSPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   81 (458)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhcc
Confidence            34457899999999999998876422     23455555555443  467898888777665543221            


Q ss_pred             --hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhc
Q psy14014        240 --SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD--SEAEVRAAAANKVRDFCQNL  315 (615)
Q Consensus       240 --~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~  315 (615)
                        +.....+.+.+.+.+.+++..+| .++.+++.++.........+.+++.+...+.+  ..+.++..++.+++.+....
T Consensus        82 l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~  160 (458)
T d1ibrb_          82 IDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI  160 (458)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc
Confidence              12234566667777777765444 56677777765543333345788888887755  45778889999999888766


Q ss_pred             cccchhHHHHHhhHHHHHHhhC--CCCHHHHHHHHHHHHhhchhhcc----hhhhhhhHHHHHHhhcCCChhHHHHHHHh
Q psy14014        316 DAYNQENIIMTYILPYVKDLVA--DPNQHVKSALASVIMGLSPILGK----HNTVDHLLPLFLSQLKDECPEVRLNIISN  389 (615)
Q Consensus       316 ~~~~~~~~~~~~l~p~l~~~~~--d~~~~vR~~~~~~l~~l~~~~g~----~~~~~~l~p~l~~~l~d~~~~vr~~a~~~  389 (615)
                      ...... .....+++.+...+.  +.+..+|..+++++..+......    +.....+.+.+...+.+++++++..++++
T Consensus       161 ~~~~~~-~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (458)
T d1ibrb_         161 DPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN  239 (458)
T ss_dssp             CGGGTG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             cchhhh-hhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHH
Confidence            543322 345667777777765  45789999999999888765432    23344567788888899999999999999


Q ss_pred             hhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--------
Q psy14014        390 LDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--------  461 (615)
Q Consensus       390 l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--------  461 (615)
                      +..+.+..+.. +         .|         ++...+. +.+.....+.+..+|..+++.+..++.....        
T Consensus       240 l~~i~~~~~~~-~---------~~---------~l~~~~~-~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~  299 (458)
T d1ibrb_         240 LVKIMSLYYQY-M---------ET---------YMGPALF-AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA  299 (458)
T ss_dssp             HHHHHHHCGGG-C---------TT---------TTTTTHH-HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHhHHH-H---------HH---------HHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            98876654321 0         01         1111111 3444556677788888888888877643210        


Q ss_pred             ---------------HhHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCC
Q psy14014        462 ---------------EFFDEKLNALCMTWLV-------DHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQN  519 (615)
Q Consensus       462 ---------------~~~~~~l~~~l~~~l~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~  519 (615)
                                     ....+.+.|.+...+.       +..+.+|.++..++..++..+|.+. .+.++|.+.+.+++++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~~i~~~l~s~~  378 (458)
T d1ibrb_         300 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPD  378 (458)
T ss_dssp             TCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTCSS
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh-hhHHHHHHHHHhcCCC
Confidence                           1123456666666543       4567899999999999999888663 4568888989999999


Q ss_pred             chHHHHHHHHHHHHHhhhChhh---HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh-hHHhhHHHHHhhhc
Q psy14014        520 YLHRMTCLFCINVLAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN-VIQSQVKPALDKLN  593 (615)
Q Consensus       520 ~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~l~  593 (615)
                      |.+|.+++.+++.+++.+.+..   +.+.++|.+..+++|+++.||..|+.++++++..++.. .....+.+++..|+
T Consensus       379 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         379 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            9999999999999997665433   45678999999999999999999999999999887643 23455777777764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-15  Score=156.50  Aligned_cols=468  Identities=14%  Similarity=0.099  Sum_probs=304.5

Q ss_pred             hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHH
Q psy14014         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (615)
Q Consensus        87 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  166 (615)
                      .....+|.|..++.+++..+|..|+.++..++..-....   .   ++    .                         ..
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~---~---~~----~-------------------------~~   58 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---A---IM----R-------------------------SP   58 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH---H---HH----T-------------------------CH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHH---H---HH----H-------------------------hh
Confidence            334457888888899999999999999999875422110   0   00    0                         01


Q ss_pred             HHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---
Q psy14014        167 ELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---  240 (615)
Q Consensus       167 ~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---  240 (615)
                      .+++.+..+++ ..+.++++.++.++..++..-..  .......+|.+..+++++++.++..|..++..++...+..   
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  138 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH
Confidence            23344455554 35678899898888888653221  2334567899999999999999999999999988766542   


Q ss_pred             hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhcc
Q psy14014        241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLD  316 (615)
Q Consensus       241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~  316 (615)
                      ......+|.+..++++++..++..++.+++.++..-..   .......++.+..++.+ +...++..++..+..+..  .
T Consensus       139 ~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~--~  216 (529)
T d1jdha_         139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--C  216 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--S
T ss_pred             HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc--c
Confidence            12345789999999999999999999999988743111   11123456777777754 456788888888887754  2


Q ss_pred             ccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014        317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       317 ~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~  396 (615)
                      ++.+........++.+..++.+++..++..++.++..+.............+|.+.+++++.+.+++..++.++..+...
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~  296 (529)
T d1jdha_         217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence            33333344456788888999999999999999999888654433333446789999999998999999999998877532


Q ss_pred             hchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh--hcCCchHHHHHHHHhHHHHhhhChH-hH-----HHHH
Q psy14014        397 IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA--EDSKWRVRLAIIEYMPLLAGQLGVE-FF-----DEKL  468 (615)
Q Consensus       397 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~-~~-----~~~l  468 (615)
                        ........  .+.       .        .. +.+...+  ..++..++..++.++..++...... ..     ....
T Consensus       297 --~~~~~~~i--~~~-------~--------~i-~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~  356 (529)
T d1jdha_         297 --NYKNKMMV--CQV-------G--------GI-EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG  356 (529)
T ss_dssp             --CHHHHHHH--HHT-------T--------HH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTC
T ss_pred             --hhHHHHHH--HHh-------h--------hH-HHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhccc
Confidence              11111111  000       0        00 2333333  2345667788888888776433221 11     1223


Q ss_pred             HHHHHHhcCCc-chHHHHHHHHHHHHHHHHhCh-H-HhhhchhHHHHhhhcCCCc----------------------hHH
Q psy14014        469 NALCMTWLVDH-VYAIREAATLNLKKLVEQFGS-E-WAQSTVIPKVVAMSRDQNY----------------------LHR  523 (615)
Q Consensus       469 ~~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~-~-~~~~~i~~~l~~~~~d~~~----------------------~~R  523 (615)
                      ++.+..++.++ .+.++..+..++..++..-.. . ......++.+.+++.+.+.                      ..+
T Consensus       357 l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (529)
T d1jdha_         357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  436 (529)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHH
T ss_pred             chhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHH
Confidence            56677777654 467888888888888643221 1 1123356666665543322                      233


Q ss_pred             HHHHHHHHHHHhhhChhh-H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhcCCCCcc
Q psy14014        524 MTCLFCINVLAEACGPTV-T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLNGDTDVD  599 (615)
Q Consensus       524 ~~a~~~l~~l~~~~~~~~-~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~d~~  599 (615)
                      ..++.+++.++....... + ....++.|.+++.++++++|..++.+|..+...-+..  .......+.+.+|++++++.
T Consensus       437 ~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~  516 (529)
T d1jdha_         437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG  516 (529)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHH
Confidence            444555555543221111 1 2346788999999999999999999999987432211  12333556677788999999


Q ss_pred             HHHHHHHHHHHH
Q psy14014        600 VKYFAQEAISSI  611 (615)
Q Consensus       600 v~~~a~~a~~~~  611 (615)
                      ||+.|..|+..+
T Consensus       517 v~~~a~~aL~~l  528 (529)
T d1jdha_         517 VATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.2e-15  Score=153.85  Aligned_cols=380  Identities=12%  Similarity=0.132  Sum_probs=252.1

Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHhhcCh---h-hHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCc---cchh
Q psy14014        211 FVNLAQDEQDSVRLLAVEACVSIASLLSQ---S-DVEQLVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGP---EITK  282 (615)
Q Consensus       211 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~-~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~---~~~~  282 (615)
                      +.+.+++++.+.+..|+.++..+...-..   + -....++|.+.+++.+ +++.+|..++.+|..++.....   ....
T Consensus        18 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~   97 (434)
T d1q1sc_          18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD   97 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh
Confidence            34445555666666666665555432222   1 1122356666666643 3456777777777666532111   1123


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCH-----HHHHHHHHHHHhhchh
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQ-----HVKSALASVIMGLSPI  357 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~-----~vR~~~~~~l~~l~~~  357 (615)
                      ...+|.+..++++++++++..|+.+|..++..-+ ..+........++.+..++...+.     .....++..+..++..
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGS-AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  176 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhccch-HHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhc
Confidence            4678888888988889999999999988775321 122222334566777776654432     2334455666666543


Q ss_pred             hcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHH
Q psy14014        358 LGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV  434 (615)
Q Consensus       358 ~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~  434 (615)
                      ...   ......++|.+..++++.+++++..++.++..+.....  ......         ..        ..+. |.+.
T Consensus       177 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~---------~~--------~~~~-~~Lv  236 (434)
T d1q1sc_         177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIEMV---------VK--------KGVV-PQLV  236 (434)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHHHHH---------HT--------TTCH-HHHH
T ss_pred             ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhh--hhHHHH---------hh--------cccc-hhcc
Confidence            222   22345688999999999999999999999887754321  111111         00        0011 6777


Q ss_pred             HhhhcCCchHHHHHHHHhHHHHhhhC---hHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhhhchh
Q psy14014        435 ELAEDSKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQSTVI  508 (615)
Q Consensus       435 ~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~  508 (615)
                      ++++++++.++..++..+..++..-.   ...+...+++.+..++.+++..+|..++.+++.++.....   ......++
T Consensus       237 ~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  316 (434)
T d1q1sc_         237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV  316 (434)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             cccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhH
Confidence            88889999999999999988864221   1223344566788889999999999999999999753211   12234588


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh----hhh
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE----TNV  580 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~----~~~  580 (615)
                      |.+.+++.++++.+|..++++++++....+.+..    ...+++.|..++.+++++++..+..++..+.....    .+.
T Consensus       317 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~  396 (434)
T d1q1sc_         317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK  396 (434)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            9999999999999999999999999877665432    34578999999999999999999999999876542    111


Q ss_pred             H-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        581 I-----QSQVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       581 ~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                      +     ...+.+.++.|..+++++|+..|.+.++.+
T Consensus       397 ~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         397 LSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            1     122455678889999999999999988753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.4e-15  Score=151.49  Aligned_cols=389  Identities=11%  Similarity=0.101  Sum_probs=273.4

Q ss_pred             CCCCCCCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCc---ch-hhccchhhhhhhcCCcH--HHHHHHHHHh
Q psy14014          2 ASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ER-TRGELIPFLTETIYDED--EVLLALAEQL   75 (615)
Q Consensus         2 ~~~~~~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~---~~-~~~~ll~~l~~~~~~~~--~vr~~a~~~l   75 (615)
                      |-=++..+..--.|..++..++|+|+..+..|++.+..+...-..   +. ....++|.|.+++++.+  ++|..++.+|
T Consensus         2 ~~~~~~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L   81 (434)
T d1q1sc_           2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL   81 (434)
T ss_dssp             CCCCSTTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CccccccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHH
Confidence            334445555566788999999999999999999999887542222   11 23468888888886543  4999999999


Q ss_pred             ccccCCCCCcch-----hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh--h-HHhhhHHHHHHHhhcCCCcc-h-
Q psy14014         76 GTFTPNVGGPEY-----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASGDWFT-S-  145 (615)
Q Consensus        76 ~~l~~~~~~~~~-----~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~l~~~~~~~-~-  145 (615)
                      ..++...  ++.     ....+|.+..++.+++..++..|+.++.+++..-+.  . ......++.+..+...+... . 
T Consensus        82 ~~la~~~--~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~  159 (434)
T d1q1sc_          82 TNIASGT--SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA  159 (434)
T ss_dssp             HHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred             HHHhcCC--hhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccch
Confidence            9887532  111     234677888888999999999999999999865432  1 12333455555555443221 1 


Q ss_pred             ---hhhHHhhhhhhccCCC----hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhh
Q psy14014        146 ---RTSACGLFSVCYPRVT----AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLA  215 (615)
Q Consensus       146 ---r~~a~~~l~~~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~  215 (615)
                         ...+...+..++....    -.....+++.+..++.+.+++++..++.++..++.....   ......++|.+.+++
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll  239 (434)
T d1q1sc_         160 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL  239 (434)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc
Confidence               1122333444433321    134567889999999999999999999999998754221   123456889999999


Q ss_pred             ccCchhHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHH
Q psy14014        216 QDEQDSVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAF  289 (615)
Q Consensus       216 ~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l  289 (615)
                      ++++..++..++.++..++...+.   ......+++.+.+++++++..+|..++.+++.++......   .....++|.+
T Consensus       240 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  319 (434)
T d1q1sc_         240 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL  319 (434)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             ccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHH
Confidence            999999999999999988753322   1122346677888999999999999999999887532111   1224578999


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc---ch-hhhh
Q psy14014        290 QMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG---KH-NTVD  365 (615)
Q Consensus       290 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g---~~-~~~~  365 (615)
                      .+.+.+.++++|..|+.++..+......+.........+++.|.+++++.+++++..+++++..+.....   .. .+..
T Consensus       320 i~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~  399 (434)
T d1q1sc_         320 VGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSI  399 (434)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            9999999999999999999998876554433323345578999999999999999999999988875432   11 1111


Q ss_pred             -----hhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014        366 -----HLLPLFLSQLKDECPEVRLNIISNLDC  392 (615)
Q Consensus       366 -----~l~p~l~~~l~d~~~~vr~~a~~~l~~  392 (615)
                           ..++.+..+..+++++|+..|.+.+..
T Consensus       400 ~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         400 MIEECGGLDKIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             HHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                 245667677777889999988876654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-14  Score=150.25  Aligned_cols=402  Identities=13%  Similarity=0.005  Sum_probs=237.5

Q ss_pred             HHHHHHhhcCCCcchhhhHHhhhhhhccCCCh---hh-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhh
Q psy14014        131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTA---GV-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYL  203 (615)
Q Consensus       131 l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~  203 (615)
                      +|.+..+..+++..++..++..+..++..-..   .+ ....++.+..+++++++.++..++.++..++..-..   ...
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  182 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL  182 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            44444444444444444444444433322111   11 223556677888999999999999999988753221   122


Q ss_pred             HhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc
Q psy14014        204 KTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI  280 (615)
Q Consensus       204 ~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~  280 (615)
                      ....++.+..++. .+...++..+..++..++..-...  ......++.+..++.+++..++..++.++..++.......
T Consensus       183 ~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~  262 (529)
T d1jdha_         183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE  262 (529)
T ss_dssp             HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchh
Confidence            3345666666665 445678888888888776433221  1223467888899999999999999999988876555444


Q ss_pred             hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh--CCCCHHHHHHHHHHHHhhchhh
Q psy14014        281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV--ADPNQHVKSALASVIMGLSPIL  358 (615)
Q Consensus       281 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~--~d~~~~vR~~~~~~l~~l~~~~  358 (615)
                      .....++.+.+++++.+++++..|+.+|..++..- .+.+........++.+...+  ....+.++..++.++..++...
T Consensus       263 ~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~  341 (529)
T d1jdha_         263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  341 (529)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             hhhhcchhhhhhcccccHHHHHHHHHHHHhhccch-hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchh
Confidence            45678999999999999999999999999887531 11111122234455555544  3566788999999998887432


Q ss_pred             cchh------hhhhhHHHHHHhhcCC-ChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhH
Q psy14014        359 GKHN------TVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL  431 (615)
Q Consensus       359 g~~~------~~~~l~p~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~  431 (615)
                      ....      .....++.+..++.++ ++.++..++..+..+......   +..+.-...+                  |
T Consensus       342 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~---~~~l~~~g~i------------------~  400 (529)
T d1jdha_         342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN---HAPLREQGAI------------------P  400 (529)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG---HHHHHHTTHH------------------H
T ss_pred             hcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhh---hhhhhhcccH------------------H
Confidence            2111      1224577888888754 456777777776655432111   1110000011                  2


Q ss_pred             HHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh-H-Hhhhchh
Q psy14014        432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS-E-WAQSTVI  508 (615)
Q Consensus       432 ~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~i~  508 (615)
                      .+.+++.+.+..++..+......                  ..... -....+++.+..++..++..... . ......+
T Consensus       401 ~L~~lL~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i  462 (529)
T d1jdha_         401 RLVQLLVRAHQDTQRRTSMGGTQ------------------QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI  462 (529)
T ss_dssp             HHHHHHHHHHHHHC-----------------------------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCCHHHHHHHHhhhhh------------------HHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCH
Confidence            33333322221111111111000                  00000 01233444444444444322110 0 1123467


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHH
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKI  572 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l  572 (615)
                      +.|.+++.++++.+|..++.++..++..-+...  .....++.|.+++.++++.||..+..+|.+|
T Consensus       463 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         463 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            889999999999999999999999874322111  2345788899999999999999999999886

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=5.8e-14  Score=144.07  Aligned_cols=383  Identities=11%  Similarity=0.092  Sum_probs=267.8

Q ss_pred             hHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCc---
Q psy14014        207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGP---  278 (615)
Q Consensus       207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~---  278 (615)
                      .++.+.+.++.++...+..|+..+..+...-..    ..+...++|.+..++. +.+..++..++.+|+.++.....   
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~  156 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  156 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345455555666666666666666554322111    1123346777777775 45677888888888877642111   


Q ss_pred             cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhh
Q psy14014        279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPIL  358 (615)
Q Consensus       279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~  358 (615)
                      ......++|.+..++.+++.+++..|+.+|+.++..- .+.+.......+++.+..++++.+..++..+++++..++...
T Consensus       157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~-~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~  235 (503)
T d1wa5b_         157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS-TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  235 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh-HHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence            1123457899999999999999999999999987642 222333344567888999999999999999999999998643


Q ss_pred             cc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHH
Q psy14014        359 GK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVE  435 (615)
Q Consensus       359 g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~  435 (615)
                      ..   ......++|.+.+++...+++++..++.++..+...... .. ...     +            ...+. +.+..
T Consensus       236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~-~~-~~~-----~------------~~~~~-~~l~~  295 (503)
T d1wa5b_         236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-AI-QAV-----I------------DVRIP-KRLVE  295 (503)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-HH-HHH-----H------------HTTCH-HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCch-hh-hhh-----h------------hhhhh-hhhhh
Confidence            22   223457899999999999999999999998877643221 11 111     1            00011 57778


Q ss_pred             hhhcCCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH----Hhhhchh
Q psy14014        436 LAEDSKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE----WAQSTVI  508 (615)
Q Consensus       436 ~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~  508 (615)
                      ++.++++.++..++.+++.++...+..   .....+++.+..++.+++..+|..++.+++.++.. +++    .....++
T Consensus       296 ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l  374 (503)
T d1wa5b_         296 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLI  374 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCH
T ss_pred             cccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHcccc
Confidence            888899999999999999887533221   12235778888999999999999999999998642 222    1224588


Q ss_pred             HHHHhhhcCCCchHHHHHHHHHHHHHhhhCh--hh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh----
Q psy14014        509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGP--TV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET----  578 (615)
Q Consensus       509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~----  578 (615)
                      |.+.+.+.+.++.+|..+++++.+++.....  +.    ....+++.+..++...++++...+..++..+......    
T Consensus       375 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~  454 (503)
T d1wa5b_         375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA  454 (503)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999865432  21    2356788899999999999999999999888753211    


Q ss_pred             -----hhH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014        579 -----NVI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSI  611 (615)
Q Consensus       579 -----~~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~  611 (615)
                           ..+     .......+..|.++++.+|+..|...+..+
T Consensus       455 ~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         455 RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             HTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                 011     122445577788899999999999888753

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.1e-13  Score=138.59  Aligned_cols=383  Identities=10%  Similarity=0.039  Sum_probs=267.5

Q ss_pred             HHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChh---h
Q psy14014        170 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---D  241 (615)
Q Consensus       170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~  241 (615)
                      +.+.+.+...+...+..++..+..+...-..    ......++|.+..+++ +.++.++..|..++..++...+..   .
T Consensus        79 ~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~  158 (503)
T d1wa5b_          79 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  158 (503)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3344555677777777777766655421111    2234567888888886 456778999999988887544322   1


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014        242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY  318 (615)
Q Consensus       242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  318 (615)
                      ....++|.+..++.+++..++..++.+++.++....   .......+++.+..++.+.+++++..++.++..++....+.
T Consensus       159 ~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~  238 (503)
T d1wa5b_         159 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ  238 (503)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence            223468888888888899999999999998874311   11123357888999999999999999999999998754332


Q ss_pred             chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014        319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE  395 (615)
Q Consensus       319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~  395 (615)
                      .. ......++|.+..++.+.++.++..+++++..++.....   ......++|.+..++.++++.++..++.+++.+..
T Consensus       239 ~~-~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         239 PD-WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CC-HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             hH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence            21 234567899999999999999999999999988753221   11233578899999999999999999999988764


Q ss_pred             hhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC---hHhHHHHHHHHH
Q psy14014        396 VIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNALC  472 (615)
Q Consensus       396 ~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l  472 (615)
                      ..+  .......-...+                  +.+..+++++++.+|..++.++..++..-.   .......+++.+
T Consensus       318 ~~~--~~~~~~~~~~~l------------------~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~l  377 (503)
T d1wa5b_         318 GND--LQTQVVINAGVL------------------PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL  377 (503)
T ss_dssp             SCH--HHHHHHHHTTHH------------------HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             HHH--HHHHhhhccchH------------------HHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchh
Confidence            322  111111000111                  567778888999999999999998864211   112335577888


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHhCh--HH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-------
Q psy14014        473 MTWLVDHVYAIREAATLNLKKLVEQFGS--EW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-------  539 (615)
Q Consensus       473 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-------  539 (615)
                      +..+.+.+..+|..|+.++..++.....  +.    ....+++.+.+++...+......++.++..+......       
T Consensus       378 i~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~  457 (503)
T d1wa5b_         378 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL  457 (503)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            8999888999999999999999875432  21    1245788899999888888888888888887643211       


Q ss_pred             --hh----H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014        540 --TV----T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIG  573 (615)
Q Consensus       540 --~~----~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~  573 (615)
                        ..    + ....+..+..+..+++.+|+..|...+....
T Consensus       458 ~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f  498 (503)
T d1wa5b_         458 NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF  498 (503)
T ss_dssp             SSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence              11    1 1234556777778888889888877776543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=9.2e-14  Score=130.28  Aligned_cols=253  Identities=12%  Similarity=0.010  Sum_probs=150.4

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014        246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM  325 (615)
Q Consensus       246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  325 (615)
                      ..+.+.++++|+++.||..++..|+.+..        +..+|.+.++++|+++.||..|+.+|+.+......       .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-------~   84 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-------E   84 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-------c
Confidence            34455667777888888888877776531        45677777778888888888887777765432111       1


Q ss_pred             HhhHHH-HHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014        326 TYILPY-VKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV  404 (615)
Q Consensus       326 ~~l~p~-l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  404 (615)
                      +...+. +..+++|+++.||..++.+++.++..-  ....+.+++.+...+.|.++.||..++..++.+....       
T Consensus        85 ~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~-------  155 (276)
T d1oyza_          85 DNVFNILNNMALNDKSACVRATAIESTAQRCKKN--PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-------  155 (276)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-------
T ss_pred             cchHHHHHHHHhcCCChhHHHHHHHHHHHHcccc--chhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHH-------
Confidence            112222 333566777888887777777665421  2223456677777777777777777766554331100       


Q ss_pred             HHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHH
Q psy14014        405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIR  484 (615)
Q Consensus       405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR  484 (615)
                            .+                  +.+..++.+.++.+|..+...+..+..  +.    ....+.+...+.+++..+|
T Consensus       156 ------~~------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~  205 (276)
T d1oyza_         156 ------TI------------------PLLINLLKDPNGDVRNWAAFAININKY--DN----SDIRDCFVEMLQDKNEEVR  205 (276)
T ss_dssp             ------CH------------------HHHHHHHTCSSHHHHHHHHHHHHHHTC--CC----HHHHHHHHHHTTCSCHHHH
T ss_pred             ------HH------------------HHHHHhcccccchhhhhHHHHHHhhhc--cc----cccchhhhhhhhhhhhhhh
Confidence                  01                  344455566666666666655543321  11    2244455666777777787


Q ss_pred             HHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCC-CCCchHHH
Q psy14014        485 EAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAG-DNVANVRF  563 (615)
Q Consensus       485 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-D~~~~vr~  563 (615)
                      ..+..+++.+    +.    ...+|.|.+.+.|+  .+|..++.+++.++.        +..+|.|..++. +++.+||.
T Consensus       206 ~~~~~al~~~----~~----~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~  267 (276)
T d1oyza_         206 IEAIIGLSYR----KD----KRVLSVLCDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIIT  267 (276)
T ss_dssp             HHHHHHHHHT----TC----GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHH
T ss_pred             hhhccccchh----hh----hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHH
Confidence            7777776544    21    24566666666654  367777777777641        235666666443 45677777


Q ss_pred             HHHHHHH
Q psy14014        564 NVAKTLQ  570 (615)
Q Consensus       564 ~a~~~l~  570 (615)
                      .|+.+|.
T Consensus       268 ~A~~~L~  274 (276)
T d1oyza_         268 SAIDKLK  274 (276)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            7777664

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=9.2e-13  Score=123.28  Aligned_cols=249  Identities=18%  Similarity=0.141  Sum_probs=170.1

Q ss_pred             HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHH-HHH
Q psy14014         95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS-HFR  173 (615)
Q Consensus        95 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~  173 (615)
                      |..+++|+++.||..|+.+|..+..        +..+|.+..+..|++..+|..|+..++.+.....  ......+ ++.
T Consensus        24 L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~l~~   93 (276)
T d1oyza_          24 LFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--CEDNVFNILNN   93 (276)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--THHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--cccchHHHHHH
Confidence            4445556666666666665554421        1234555555556556666666555554432211  1122222 234


Q ss_pred             HHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHh
Q psy14014        174 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC  253 (615)
Q Consensus       174 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  253 (615)
                      .++.|+++.||..++.+++.++...+  .....+++.+...+.|.++.||..+..+++.+.        .+..++.+..+
T Consensus        94 ~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~--------~~~~~~~l~~l  163 (276)
T d1oyza_          94 MALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN--------DKATIPLLINL  163 (276)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHH
T ss_pred             HHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc--------hHHHHHHHHHh
Confidence            45689999999999999999876532  234568888899999999999999888776543        23456778888


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +.+.++.+|..+...++....      ......+.+...+.+.+..+|..+..+++.+..            +..+|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~------------~~~~~~L~  225 (276)
T d1oyza_         164 LKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLSVLC  225 (276)
T ss_dssp             HTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHHHHH
T ss_pred             cccccchhhhhHHHHHHhhhc------cccccchhhhhhhhhhhhhhhhhhccccchhhh------------hhhHHHHH
Confidence            899999999988876665432      124567778888999999999999999876532            34567777


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC-CChhHHHHHHHhhh
Q psy14014        334 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLD  391 (615)
Q Consensus       334 ~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d-~~~~vr~~a~~~l~  391 (615)
                      +.+.|+  .||..++.+|+.++.        +..+|.+.+++.+ ++.+||..|+++|.
T Consensus       226 ~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         226 DELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            777764  589999999987642        2467888887765 57899999998874

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=9.3e-09  Score=113.46  Aligned_cols=363  Identities=10%  Similarity=0.042  Sum_probs=198.1

Q ss_pred             hHHHHHHHHHHHHHhhcChhhHHHhHHHHHH----HhcC--CCChHHHHHHHHHHHHHHHHhCcc-------c----hhh
Q psy14014        221 SVRLLAVEACVSIASLLSQSDVEQLVMPTLR----QCSG--DTSWRVRYMVADKFTDLQKAVGPE-------I----TKT  283 (615)
Q Consensus       221 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~----~~~~--d~~~~vR~~~~~~l~~l~~~~~~~-------~----~~~  283 (615)
                      ..|.+|...+..++...++.. .+.+.+.+.    +...  +.+|..|.++...++.+....+..       .    ..+
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  454 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             cHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHH
Confidence            456666677777766655432 233333333    3322  457999999998888876432110       0    011


Q ss_pred             hHHHHHHHhh---cCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc
Q psy14014        284 DLVQAFQMLL---KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       284 ~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      .+.+.+...+   .++.+.+|..++..++.+.....++     ....+++.+...++|++..||..++.++..+......
T Consensus       455 ~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~-----~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~  529 (959)
T d1wa5c_         455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-----QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (959)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             HHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence            1222222222   4566789999999999988765432     4567889999999999999999999999988765332


Q ss_pred             ----------hh---hhhhhHHHHHHhhcCCChh-----HHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccc
Q psy14014        361 ----------HN---TVDHLLPLFLSQLKDECPE-----VRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVE  422 (615)
Q Consensus       361 ----------~~---~~~~l~p~l~~~l~d~~~~-----vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~  422 (615)
                                +.   +.+.++..+...+.+....     +...+.+++..+++..++.- .      .+.+.+.      
T Consensus       530 ~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~-~------~~~~~i~------  596 (959)
T d1wa5c_         530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-Q------PLFPQLL------  596 (959)
T ss_dssp             SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-G------GGHHHHH------
T ss_pred             cccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHH------
Confidence                      11   2333444444444332221     22345556655554443211 0      0011000      


Q ss_pred             hhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Q psy14014        423 FFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF  498 (615)
Q Consensus       423 ~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  498 (615)
                         +.+. +.+....++ .+......+.+.+..+....|++.   +.+.++|.+...++.........+...+..+....
T Consensus       597 ---~~l~-~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         597 ---AQFI-EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             ---HHHH-HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             ---HHHH-HHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence               0010 222333333 345677788888998888777644   34667888877776666667778888888887765


Q ss_pred             ChH-HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH--HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014        499 GSE-WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI  575 (615)
Q Consensus       499 ~~~-~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~  575 (615)
                      +.- .....+.+.+..............+...+.......+ +.+  ...++..+..++.+...  +..+...+..++..
T Consensus       673 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~--~~~~~~ll~~ii~~  749 (959)
T d1wa5c_         673 ATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDS-SIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLL  749 (959)
T ss_dssp             SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHG-GGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCH-HhhcchHHHHHHHHHHHCCCcc--hHHHHHHHHHHHHH
Confidence            421 1112345555442222222223344455555443322 222  13455666666655433  35677777777766


Q ss_pred             hhhhh----HHhhHHHHHhhhcCCCCccHHHHHHHHHH
Q psy14014        576 LETNV----IQSQVKPALDKLNGDTDVDVKYFAQEAIS  609 (615)
Q Consensus       576 ~~~~~----~~~~~~~~l~~l~~d~d~~v~~~a~~a~~  609 (615)
                      ++...    ....+..++.++.+.+...+.....-.+.
T Consensus       750 ~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~  787 (959)
T d1wa5c_         750 IDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFG  787 (959)
T ss_dssp             SCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHH
T ss_pred             CchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            65433    33334444455655555555544444433

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.3e-07  Score=104.16  Aligned_cols=499  Identities=10%  Similarity=0.054  Sum_probs=257.9

Q ss_pred             chhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhh-cChhHHhhhHH
Q psy14014         53 LIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ-HSPHDLEAHFV  131 (615)
Q Consensus        53 ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~l  131 (615)
                      +..++.+.++.  +.|+.|-+.|..+-.   .+++...++.++..  .+.+..+|..|+-.+++.... +.+.       
T Consensus         7 l~~ll~~s~~~--~~~k~Ae~~L~~~~~---~p~f~~~L~~i~~~--~~~~~~iR~~A~i~lKn~i~~~W~~~-------   72 (959)
T d1wa5c_           7 VAKFLAESVIA--STAKTSERNLRQLET---QDGFGLTLLHVIAS--TNLPLSTRLAGALFFKNFIKRKWVDE-------   72 (959)
T ss_dssp             HHHHHHHTTSG--GGHHHHHHHHHHHHT---STTHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHHHHSBCS-------
T ss_pred             HHHHHHHCCCh--HHHHHHHHHHHHHHc---CCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhcccc-------
Confidence            44445544322  267778888876543   24555555444421  122457999988888775543 2110       


Q ss_pred             HHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHH
Q psy14014        132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF  211 (615)
Q Consensus       132 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l  211 (615)
                              ..               ...++++.+..+...+...+.+++..+|...+.+++.++..-.++ .|++++|.+
T Consensus        73 --------~~---------------~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~-~Wp~ll~~l  128 (959)
T d1wa5c_          73 --------NG---------------NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDL  128 (959)
T ss_dssp             --------SS---------------CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHH
T ss_pred             --------cc---------------cCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc-ccHHHHHHH
Confidence                    00               013456667777777777777788999999999999999875553 489999999


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHhhcChh-----------hHHHhHHHHHHHh-------cCC-CC-hHHHHHHHHHHHH
Q psy14014        212 VNLAQDEQDSVRLLAVEACVSIASLLSQS-----------DVEQLVMPTLRQC-------SGD-TS-WRVRYMVADKFTD  271 (615)
Q Consensus       212 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~l~~~l~~~-------~~d-~~-~~vR~~~~~~l~~  271 (615)
                      .+.+++++...+..++.++..+++.+...           .....+.+.+.++       ... .. ...-......+..
T Consensus       129 ~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (959)
T d1wa5c_         129 ASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLV  208 (959)
T ss_dssp             HTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            99999998999999999999998765321           1112233333222       111 11 1111111111111


Q ss_pred             HHHHh----Ccc---c---hhhhHHHHHHHhhcCCc---------------HHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014        272 LQKAV----GPE---I---TKTDLVQAFQMLLKDSE---------------AEVRAAAANKVRDFCQNLDAYNQENIIMT  326 (615)
Q Consensus       272 l~~~~----~~~---~---~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  326 (615)
                      ....+    ...   .   ....++..+...+....               ..++......+..+....+....  .+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~  286 (959)
T d1wa5c_         209 LIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG--PMIN  286 (959)
T ss_dssp             HHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH--HHHH
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence            11110    000   0   01233344444443211               24666677777766665432211  2233


Q ss_pred             hhHHHHHHhh----C-CCCHHHHHHHHHHHHhhchhhcc------hhhhhhhH-HHHHHhhc--C-------CC------
Q psy14014        327 YILPYVKDLV----A-DPNQHVKSALASVIMGLSPILGK------HNTVDHLL-PLFLSQLK--D-------EC------  379 (615)
Q Consensus       327 ~l~p~l~~~~----~-d~~~~vR~~~~~~l~~l~~~~g~------~~~~~~l~-p~l~~~l~--d-------~~------  379 (615)
                      .+++.+...+    . .....+...++..+..++.....      ......++ +.+...+.  +       .+      
T Consensus       287 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~  366 (959)
T d1wa5c_         287 EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR  366 (959)
T ss_dssp             HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHH
Confidence            3444333322    2 23345555555555554432211      11111111 12222211  0       01      


Q ss_pred             --------hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh--hcCCchHHHHHH
Q psy14014        380 --------PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA--EDSKWRVRLAII  449 (615)
Q Consensus       380 --------~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~--~~~~~~vr~~~~  449 (615)
                              ...|..+...+..+....+...... .     +             ..+. ..+....  .+.+|+.|.+++
T Consensus       367 ~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~-~-----~-------------~~i~-~~~~~~~~~~~~~~~~~e~~~  426 (959)
T d1wa5c_         367 RDLEGSDTDTRRRACTDFLKELKEKNEVLVTNI-F-----L-------------AHMK-GFVDQYMSDPSKNWKFKDLYI  426 (959)
T ss_dssp             HHHHC----CHHHHHHHHHHHHHHHCHHHHHHH-H-----H-------------HHHH-HHHHHHHC----CHHHHHHHH
T ss_pred             HHhhhcccccHHHHHHHHHHHHHHhccccchHH-H-----H-------------HHHH-HHHHhhccCCccchHHHHHHH
Confidence                    1123333333333332222110000 0     0             0000 1111111  246899999999


Q ss_pred             HHhHHHHhhhCh-----------HhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhh
Q psy14014        450 EYMPLLAGQLGV-----------EFFDEKLNALCMTW---LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS  515 (615)
Q Consensus       450 ~~l~~l~~~~~~-----------~~~~~~l~~~l~~~---l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  515 (615)
                      ..++.+....+.           ..+.+.+.+.+...   ..++...+|..+..+++.+.....++. ...+++.+.+.+
T Consensus       427 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~L  505 (959)
T d1wa5c_         427 YLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFL  505 (959)
T ss_dssp             HHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHh
Confidence            999888642210           11233333333333   345567799999999999887766553 456899999999


Q ss_pred             cCCCchHHHHHHHHHHHHHhhhCh----------hhH---HHhhHHHHHhhCCCCCch-----HHHHHHHHHHHHhHhhh
Q psy14014        516 RDQNYLHRMTCLFCINVLAEACGP----------TVT---ANFLLPTVLNMAGDNVAN-----VRFNVAKTLQKIGPILE  577 (615)
Q Consensus       516 ~d~~~~~R~~a~~~l~~l~~~~~~----------~~~---~~~i~~~l~~~~~D~~~~-----vr~~a~~~l~~l~~~~~  577 (615)
                      .|++..+|..|+.++..+......          +.+   .+.++..+...+.+....     +...+..++..++...+
T Consensus       506 ~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~  585 (959)
T d1wa5c_         506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE  585 (959)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             CCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999865322          112   223333444433332222     23457788888877665


Q ss_pred             hh------hHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHh
Q psy14014        578 TN------VIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIA  612 (615)
Q Consensus       578 ~~------~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~  612 (615)
                      ..      ...+.+.+++.... ++.+......+.++++.+.
T Consensus       586 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            32      22233344444443 3445666666666676654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.18  E-value=5e-12  Score=111.85  Aligned_cols=184  Identities=22%  Similarity=0.209  Sum_probs=132.9

Q ss_pred             HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q psy14014        173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ  252 (615)
Q Consensus       173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  252 (615)
                      ..++.|+.|+||..++..       .+        +..+..+++|+++.||..+...+       +.        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~L-------p~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHc-------CH--------HHHHH
Confidence            346789999999776542       11        23456788999999999986543       32        34667


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHH
Q psy14014        253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYV  332 (615)
Q Consensus       253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  332 (615)
                      ++.|+++.||..++..+.               .+.+..+++|+++.||..++..+       +            .+.+
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~------------~~~L  143 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------P------------PGRL  143 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------C------------GGGG
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------c------------hhHH
Confidence            789999999998886531               12356678999999999887652       1            1234


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhh
Q psy14014        333 KDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM  412 (615)
Q Consensus       333 ~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l  412 (615)
                      ..+++|+++.||..++..+       +        .+.+..+++|+++.||..++..++       .             
T Consensus       144 ~~L~~D~d~~VR~~aA~~~-------~--------~~~L~~l~~D~d~~VR~~aa~~L~-------~-------------  188 (233)
T d1lrva_         144 FRFMRDEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRLR-------G-------------  188 (233)
T ss_dssp             GGTTTCSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHCC-------G-------------
T ss_pred             HHHhcCCCHHHHHHHHHhc-------C--------HHHHHHHccCCCHHHHHHHHHhcC-------c-------------
Confidence            4678999999999887642       2        135667788999999999886542       1             


Q ss_pred             hhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHH
Q psy14014        413 PLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATL  489 (615)
Q Consensus       413 ~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~  489 (615)
                                        +.+..+++|++|.||..+++.++                +.++..|.|++..||+++..
T Consensus       189 ------------------~~L~~l~~D~d~~VR~aaae~~~----------------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         189 ------------------DDLLELLHDPDWTVRLAAVEHAS----------------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             ------------------GGGGGGGGCSSHHHHHHHHHHSC----------------HHHHHHCCCCCHHHHHHHHC
T ss_pred             ------------------HHHHHHHhCCCHHHHHHHHHhcc----------------HHHHHHhCCCCHHHHHHHHH
Confidence                              34556788999999999876432                23466789999999999864

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.15  E-value=3.5e-12  Score=112.84  Aligned_cols=88  Identities=24%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014        252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY  331 (615)
Q Consensus       252 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~  331 (615)
                      .++.||.|.+|..++..       .+        +..+..+++|++++||..|++.|+       .            +.
T Consensus        49 ~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~------------~~   94 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRLP-------R------------EQ   94 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTSC-------S------------GG
T ss_pred             HHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHcC-------H------------HH
Confidence            35667777777655421       00        123455677777777777765442       1            23


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHH
Q psy14014        332 VKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS  388 (615)
Q Consensus       332 l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~  388 (615)
                      +..+++|+++.||..++..+.               .+.+..+++|+++.||..+.+
T Consensus        95 L~~L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_          95 LSALMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             GGGTTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHh
Confidence            444567777777776655421               123444566666677766654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.1e-09  Score=103.29  Aligned_cols=146  Identities=12%  Similarity=0.046  Sum_probs=95.9

Q ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh-------H-HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh
Q psy14014        467 KLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS-------E-WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC  537 (615)
Q Consensus       467 ~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~-------~-~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~  537 (615)
                      ..++.+...+. ..+..++..+..++..+......       . ......+|.+.++++++++.+|..++.+++.++...
T Consensus       283 ~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            44555555443 34566777777777776543221       0 112347899999999999999999999999998543


Q ss_pred             Ch-hhHHHhhHHHHHhhCCC------CCchHHHHHHHHHHHHhHhhhhh---hHHh-hHHHHHhhhcCCCCccHHHHHHH
Q psy14014        538 GP-TVTANFLLPTVLNMAGD------NVANVRFNVAKTLQKIGPILETN---VIQS-QVKPALDKLNGDTDVDVKYFAQE  606 (615)
Q Consensus       538 ~~-~~~~~~i~~~l~~~~~D------~~~~vr~~a~~~l~~l~~~~~~~---~~~~-~~~~~l~~l~~d~d~~v~~~a~~  606 (615)
                      .. .......+|.+..++.+      ...+|+..++.+|..+....+..   .... .+.+++.-+..+.++.|++.|..
T Consensus       363 ~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~  442 (457)
T d1xm9a1         363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            22 22345566777776542      34569999999999987543211   1222 34444444456667899999999


Q ss_pred             HHHHHh
Q psy14014        607 AISSIA  612 (615)
Q Consensus       607 a~~~~~  612 (615)
                      ++..+.
T Consensus       443 ~L~~L~  448 (457)
T d1xm9a1         443 LLSDMW  448 (457)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.02  E-value=2.6e-11  Score=95.25  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=84.3

Q ss_pred             hccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc
Q psy14014        215 AQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK  294 (615)
Q Consensus       215 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  294 (615)
                      ++|+++.||..|+.+|+.+    +++     .++.+.+.++|++|.||..++.+|+.+.        ....+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~~~-----~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----SST-----THHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----CHH-----HHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhc
Confidence            4688888998888887654    222     3456677888999999999998887643        2467788888999


Q ss_pred             CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHH
Q psy14014        295 DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIM  352 (615)
Q Consensus       295 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~  352 (615)
                      |+++.||..|+.+|+.+..            +...|.+.++++|+++.||..++.+|.
T Consensus        64 d~~~~VR~~a~~aL~~i~~------------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHhCc------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999987643            346777888888888888888887764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.00  E-value=3.5e-11  Score=94.48  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      ++|+++.||..++..|+.+.         +..++.+...++|+++.||..|+.+|+.+..            +..+|.+.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~---------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~------------~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG---------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS---------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch------------hhhHHHHH
Confidence            46889999999998887642         2345678889999999999999999986543            34678888


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhh
Q psy14014        334 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD  391 (615)
Q Consensus       334 ~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~  391 (615)
                      ++++|+++.||..++.+|+.+..        +...|.+.++++|+++.||..|+.+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999987642        346788899999999999999998875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3e-08  Score=98.54  Aligned_cols=394  Identities=10%  Similarity=-0.002  Sum_probs=201.5

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--h-H
Q psy14014        169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--D-V  242 (615)
Q Consensus       169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~  242 (615)
                      +|.+.++++++++.+|..++.+|+.++..-+   ........+|.+.++++++++.+|..|+.+|..++..-++.  . .
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4667888889999999999999999874321   12344567888999999999999999999999887433321  1 1


Q ss_pred             HHhHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCccc-hhhhHHHHHHHh----------------hcCCcHHHHHHH
Q psy14014        243 EQLVMPTLRQCS-GDTSWRVRYMVADKFTDLQKAVGPEI-TKTDLVQAFQML----------------LKDSEAEVRAAA  304 (615)
Q Consensus       243 ~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~----------------l~d~~~~vr~~a  304 (615)
                      ....++.+.+++ .+.+..+|..++.++..++....... .....++.+...                ....+++++..+
T Consensus        84 ~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a  163 (457)
T d1xm9a1          84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHH
Confidence            222456666654 45678889999999888876432211 011122222221                134567888888


Q ss_pred             HHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCC------CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCC
Q psy14014        305 ANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADP------NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE  378 (615)
Q Consensus       305 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~------~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~  378 (615)
                      +.++..+...-.... .......++|.+..++++.      .......+...+..........  .......+.....  
T Consensus       164 ~~~l~~~~~~~~~~~-~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~--  238 (457)
T d1xm9a1         164 TGCLRNLSSADAGRQ-TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE--VPTRYRQLEYNAR--  238 (457)
T ss_dssp             HHHHHHHTTSHHHHH-HHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH--SCCHHHHHHHTC---
T ss_pred             HHHHHHHhcCchHHH-HHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHhhhh--
Confidence            888877665321110 0000122344444333211      1111111111221111110000  0000111110000  


Q ss_pred             ChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccc-cch-hhhhhhhHHHHHhh-hcCCchHHHHHHHHhHHH
Q psy14014        379 CPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLG-VEF-FDEKLNALSIVELA-EDSKWRVRLAIIEYMPLL  455 (615)
Q Consensus       379 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~-~~~-~~~~l~~~~i~~~~-~~~~~~vr~~~~~~l~~l  455 (615)
                      +..........+...........+.      ..+........ ... ...... +.+.... ...+..++..+...+..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~~~~~~~~~l~~l  311 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYD------CPLPEEETNPKGSGWLYHSDAI-RTYLNLMGKSKKDATLEACAGALQNL  311 (457)
T ss_dssp             ---------------------------------CCCCCSSCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHh------hhhHHhhhhhHHHHHHHhhcHH-HHHHHHHhcccchHHHHHHHHHHHHH
Confidence            0001111111111000000000000      00000000000 000 001111 3333333 334556667777776666


Q ss_pred             HhhhChHh--------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHHhhhcC------CCc
Q psy14014        456 AGQLGVEF--------FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVVAMSRD------QNY  520 (615)
Q Consensus       456 ~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d------~~~  520 (615)
                      +.......        .....+|.+.+++.+++..+|..++.+++.++..... +...+..+|.+..++.+      .+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~  391 (457)
T d1xm9a1         312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE  391 (457)
T ss_dssp             TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHH
T ss_pred             hhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcH
Confidence            54322111        1123578889999999999999999999999754321 22334567778776643      234


Q ss_pred             hHHHHHHHHHHHHHhhhChh---hHHHhhHHHHHhhCCC-CCchHHHHHHHHHHHHhH
Q psy14014        521 LHRMTCLFCINVLAEACGPT---VTANFLLPTVLNMAGD-NVANVRFNVAKTLQKIGP  574 (615)
Q Consensus       521 ~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~D-~~~~vr~~a~~~l~~l~~  574 (615)
                      .++..++.++..+....+..   ......++.|.+++.+ ..+.++..|+.+|..+..
T Consensus       392 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            68899999999988543322   1234567888887755 567899999999998863

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.3e-07  Score=86.60  Aligned_cols=177  Identities=11%  Similarity=0.057  Sum_probs=124.0

Q ss_pred             chhHHHHHHHHHHHHHhhcChhhH--H-HhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHh
Q psy14014        219 QDSVRLLAVEACVSIASLLSQSDV--E-QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQML  292 (615)
Q Consensus       219 ~~~vr~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~  292 (615)
                      +.+.|..|+.++..+++.......  . ..+.+.+..++++++..+|..++..++.++..-..   .......+|.+.++
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            345566666666666544332111  1 11334445677888889999999999988853211   12234678888888


Q ss_pred             hc-CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhh-hhhhH
Q psy14014        293 LK-DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNT-VDHLL  368 (615)
Q Consensus       293 l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~-~~~l~  368 (615)
                      +. +.++++|..++.++..++...++. .........++.+.+++.+.+..++..++.++..++..-..  ..+ ....+
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAG-LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhh-HHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            85 678999999999999998754422 12233455688888999999999999999999998754322  222 23478


Q ss_pred             HHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014        369 PLFLSQLKDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       369 p~l~~~l~d~~~~vr~~a~~~l~~l~~~  396 (615)
                      |.+.++++++++++|..++.+|..+...
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999887643

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.3e-07  Score=84.93  Aligned_cols=177  Identities=9%  Similarity=0.058  Sum_probs=130.0

Q ss_pred             ChHHHHHHHHhHHHHHHHhchh--hhH-hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHh
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVD--YLK-TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQC  253 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~--~~~-~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~  253 (615)
                      +.+.|..+++.|..+++.....  ... ..+.+++..+++++++++|..|..+++.++..-+..   ......+|.+.++
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            5577888888888877543221  111 234445556788999999999999999999765431   2234578888887


Q ss_pred             c-CCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhH
Q psy14014        254 S-GDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYIL  329 (615)
Q Consensus       254 ~-~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~  329 (615)
                      + +++++.+|..++.+++.++......   ......++.+..++++.+..++..++.++..++..-+ ...........+
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~v  188 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV  188 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccH-HHHHHHHHhhhH
Confidence            7 4678899999999999987543221   1234568999999999999999999999999886432 222223344578


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        330 PYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       330 p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      |.+..+++++++.+|..++.+|..++..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988753

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.92  E-value=0.00084  Score=62.17  Aligned_cols=158  Identities=15%  Similarity=0.087  Sum_probs=107.8

Q ss_pred             CCchHHHHHHHHhHHHHhhhC------hHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh
Q psy14014        440 SKWRVRLAIIEYMPLLAGQLG------VEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA  513 (615)
Q Consensus       440 ~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  513 (615)
                      .++.+|..+.-+++.++..+-      .+.+.+.+...+.+.....+..-+..++++||++.        ....++.+..
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--------~p~~i~~l~~  210 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--------QPNSIKKIQR  210 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CGGGHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--------CHhHHHHHHH
Confidence            467788888888888876541      12233445555555555666667777888888773        1346677776


Q ss_pred             hhcC-------CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHH
Q psy14014        514 MSRD-------QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVK  586 (615)
Q Consensus       514 ~~~d-------~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  586 (615)
                      ++.+       ....+|..|++++..+... .+....+.+++++.+  .+.+++||..|...|-..-+.      ...+.
T Consensus       211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~-~p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~------~~~l~  281 (336)
T d1lsha1         211 FLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESKPS------VALVS  281 (336)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTCCC------HHHHH
T ss_pred             HhcccccccccccHHHHHHHHHHHHHhhhc-CcHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCC------HHHHH
Confidence            6543       2557999999999998754 355556667777765  567789999998888653221      12345


Q ss_pred             HHHhhhcCCCCccHHHHHHHHHHHHhhc
Q psy14014        587 PALDKLNGDTDVDVKYFAQEAISSIADS  614 (615)
Q Consensus       587 ~~l~~l~~d~d~~v~~~a~~a~~~~~~~  614 (615)
                      .+...+..|++.+|+.+....+..+++|
T Consensus       282 ~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         282 MVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            5555567888888888888888888765

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.82  E-value=0.0024  Score=58.95  Aligned_cols=184  Identities=12%  Similarity=0.066  Sum_probs=104.2

Q ss_pred             ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC---
Q psy14014        180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD---  256 (615)
Q Consensus       180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d---  256 (615)
                      .+..|+...++++..+.        ..-+..+.+++.++.-..-+ |...+..++....+   ....+..+..++++   
T Consensus        70 ~~~~r~~~lDal~~~GT--------~~a~~~i~~~I~~~~ls~~e-a~~~l~~l~~~~~P---t~~~l~~~~~l~~~~~~  137 (336)
T d1lsha1          70 QKDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQA---TRESLSYARELLNTSFI  137 (336)
T ss_dssp             SHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCC---CHHHHHHHHHHHTCHHH
T ss_pred             ChhHHHHHHHHHHHhCC--------HHHHHHHHHHHHcCCCCHHH-HHHHHHHHhccCCC---CHHHHHHHHHHHcCccc
Confidence            45567766666655432        22334444555433322222 23344444433222   12244444445554   


Q ss_pred             -CChHHHHHHHHHHHHHHHHhCcc------chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhH
Q psy14014        257 -TSWRVRYMVADKFTDLQKAVGPE------ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYIL  329 (615)
Q Consensus       257 -~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~  329 (615)
                       .++.+|..+.-++|.+...+...      .....+...+.+..+..+.+-+..++++||.+..            +..+
T Consensus       138 ~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------------p~~i  205 (336)
T d1lsha1         138 RNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ------------PNSI  205 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------------GGGH
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC------------HhHH
Confidence             46889999999999988754322      1123344555555666777777788899987753            2344


Q ss_pred             HHHHHhhC-------CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014        330 PYVKDLVA-------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL  390 (615)
Q Consensus       330 p~l~~~~~-------d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l  390 (615)
                      +.+...+.       +....+|..++.++..++... +....+.++|.+.+  .+++.+||..|+..+
T Consensus       206 ~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~l  270 (336)
T d1lsha1         206 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVF  270 (336)
T ss_dssp             HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHH
Confidence            55555543       346789999999998886532 22223334444443  245689999988765

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.65  E-value=0.67  Score=38.74  Aligned_cols=136  Identities=10%  Similarity=0.029  Sum_probs=92.9

Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCccchh
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGPEITK  282 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~~~  282 (615)
                      ...+...+..+...+..+.|..|+..+.........     ..++.+..++.+ ++|.+-..++..++.....     ..
T Consensus        48 ~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~-----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-----~~  117 (213)
T d2b6ca1          48 KEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HL  117 (213)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SG
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-----hh
Confidence            345666777777888889999998887766554433     245666666554 4687777666555443221     13


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014        283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI  357 (615)
Q Consensus       283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~  357 (615)
                      +++.+.+....++++..+|..|+-+.-.+..   ..     ..+.++..+..++.|++..||.++.++|..++..
T Consensus       118 ~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~---~~-----~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         118 TELPTIFALFYGAENFWNRRVALNLQLMLKE---KT-----NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGG---GC-----CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---cc-----cHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            4677888888999999888887665432222   11     1345677788899999999999999999888754

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=3.1  Score=36.29  Aligned_cols=190  Identities=9%  Similarity=0.025  Sum_probs=112.5

Q ss_pred             HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh--------HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014        204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--------VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA  275 (615)
Q Consensus       204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~  275 (615)
                      ..+++..+...+..-+.+.|+.+...+..+.+.-.+..        -.+.++..+..+-++++--.  .+...|-..+.+
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl--~~G~mLREcik~  144 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRH  144 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTS
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh--hhhHHHHHHHhh
Confidence            45666666666666777778877777777665433211        01235666666666555321  111111111100


Q ss_pred             --hCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH---HHHHhhHHHHHHhhCCCCHHHHHHHHHH
Q psy14014        276 --VGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN---IIMTYILPYVKDLVADPNQHVKSALASV  350 (615)
Q Consensus       276 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~~~~~l~p~l~~~~~d~~~~vR~~~~~~  350 (615)
                        +........-+-.+.+..+-++-+|-..|...+..+...- +....+   ...+.++..+.+++.++++-+|+.+++.
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence              0000001122223445677788888888888888777532 111111   1235566667789999999999999999


Q ss_pred             HHhhchhhcchh----h--hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014        351 IMGLSPILGKHN----T--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV  396 (615)
Q Consensus       351 l~~l~~~~g~~~----~--~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~  396 (615)
                      |+.+.-.-....    +  ...-+..+..+++|.+..++..|+..+..++..
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence            998864322211    1  234467888999999999999999888777643

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.38  E-value=0.81  Score=35.41  Aligned_cols=103  Identities=9%  Similarity=0.196  Sum_probs=68.9

Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHH
Q psy14014        253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYV  332 (615)
Q Consensus       253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  332 (615)
                      ....++|..=..++..+..      ........+-.+.+.+++.++.++..|+..|..+.++++...........++..+
T Consensus        17 ~~~~~dw~~il~icD~I~~------~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l   90 (145)
T d1dvpa1          17 LRLEPDWPSILLICDEINQ------KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF   90 (145)
T ss_dssp             TCSSCCHHHHHHHHHHHHT------TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHH
Confidence            4556788765544444321      1122456778888999999999999999999999999887654433233444555


Q ss_pred             HHhhC-CCCHHHHHHHHHHHHhhchhhcch
Q psy14014        333 KDLVA-DPNQHVKSALASVIMGLSPILGKH  361 (615)
Q Consensus       333 ~~~~~-d~~~~vR~~~~~~l~~l~~~~g~~  361 (615)
                      .+++. ..+..||.-++..+..-+..++.+
T Consensus        91 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          91 SSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            45443 346788888888877777666543

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.74  E-value=3  Score=34.54  Aligned_cols=158  Identities=9%  Similarity=0.009  Sum_probs=93.2

Q ss_pred             cCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCC-
Q psy14014        100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD-  178 (615)
Q Consensus       100 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-  178 (615)
                      +-..|.+|..+-+.+...- ..+    ...+...+..+-..+..+.|..|+.++........+    ..++.+..++.+ 
T Consensus        26 GV~~P~~r~laK~~~k~~~-~~~----~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~----~~l~~~~~~~~~~   96 (213)
T d2b6ca1          26 GIPAPERQALSKQLLKESH-TWP----KEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQK   96 (213)
T ss_dssp             CCCHHHHHHHTHHHHHHHT-TSC----HHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTT
T ss_pred             CCChHHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCH----HHHHHHHHHHccC
Confidence            3444555555554443321 111    123344445555666667777777766655544433    223445555554 


Q ss_pred             CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCC
Q psy14014        179 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTS  258 (615)
Q Consensus       179 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~  258 (615)
                      ++|.+=-..+..++......     .....+.+....++++..+|+.|+.+.-...    .+.....+++.+..+..|++
T Consensus        97 ~~Wd~vD~~~~~i~~~~~~~-----~~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~----~~~~~~~~~~~~~~~~~d~e  167 (213)
T d2b6ca1          97 AWWDSVDAWRKFFGSWVALH-----LTELPTIFALFYGAENFWNRRVALNLQLMLK----EKTNQDLLKKAIIYDRTTEE  167 (213)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-----GGGHHHHHHHHTTCSSHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHTTTCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HcccHHHHHHHHHHhCCChH
Confidence            56776666555554433221     2346678888899999999998766542221    12223456777888889999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy14014        259 WRVRYMVADKFTDLQKA  275 (615)
Q Consensus       259 ~~vR~~~~~~l~~l~~~  275 (615)
                      ..||++++..|..++..
T Consensus       168 ~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         168 FFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988887653

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=3.2  Score=31.80  Aligned_cols=77  Identities=8%  Similarity=0.041  Sum_probs=58.1

Q ss_pred             hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC------CCHHHHHHHHHHHHhhc
Q psy14014        282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD------PNQHVKSALASVIMGLS  355 (615)
Q Consensus       282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d------~~~~vR~~~~~~l~~l~  355 (615)
                      ....+-.+.+-+.+.++.+...|+..+..+.++++.....+.....++..+.+++..      .+..||.-++..+..-+
T Consensus        43 ~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~  122 (145)
T d1ujka_          43 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  122 (145)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence            346677788889999999999999999999999988766544455666667676653      56788887777776655


Q ss_pred             hhh
Q psy14014        356 PIL  358 (615)
Q Consensus       356 ~~~  358 (615)
                      ..+
T Consensus       123 ~~f  125 (145)
T d1ujka_         123 VGL  125 (145)
T ss_dssp             HHC
T ss_pred             HHC
Confidence            544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=6.1  Score=34.36  Aligned_cols=126  Identities=17%  Similarity=0.222  Sum_probs=88.5

Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHhC---hHHhh---hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhH-
Q psy14014        471 LCMTWLVDHVYAIREAATLNLKKLVEQFG---SEWAQ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVT-  542 (615)
Q Consensus       471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~---~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~-  542 (615)
                      .+++..+-++.++-.-|..++..+.....   .++..   +.+...+.+++.++|+.+|..+++.+|.+.-.-.. ... 
T Consensus       159 ~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~  238 (330)
T d1upka_         159 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  238 (330)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            46778888999999999999988876432   12221   34666777889999999999999999998743211 111 


Q ss_pred             ----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh-hhhH-------HhhHHHHHhhhcCCC
Q psy14014        543 ----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE-TNVI-------QSQVKPALDKLNGDT  596 (615)
Q Consensus       543 ----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~-~~~~-------~~~~~~~l~~l~~d~  596 (615)
                          ...-+..+..++.|+..+++..|...+..++..=. ++..       .+.+...+....+|.
T Consensus       239 ~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCC
Confidence                13567788889999999999999999988764311 1111       234556666666675

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=4.9  Score=30.93  Aligned_cols=100  Identities=10%  Similarity=0.077  Sum_probs=68.3

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +..++|..-..++..+..     .. ......+-.+.+-+++.++.+...|+..|..+.++++...........++..+.
T Consensus        15 l~~~dw~~ileicD~In~-----~~-~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~   88 (151)
T d1juqa_          15 NRQEDWEYIIGFCDQINK-----EL-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   88 (151)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHH
Confidence            456788665555544432     11 123467777888889999999999999999999999877654443445666666


Q ss_pred             HhhCC------CCHHHHHHHHHHHHhhchhhc
Q psy14014        334 DLVAD------PNQHVKSALASVIMGLSPILG  359 (615)
Q Consensus       334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g  359 (615)
                      +++..      .+..||.-++..+..-+..+.
T Consensus        89 kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~  120 (151)
T d1juqa_          89 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALP  120 (151)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence            66653      356788887777766655543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.58  E-value=1.8  Score=33.32  Aligned_cols=96  Identities=13%  Similarity=0.029  Sum_probs=62.8

Q ss_pred             hhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh----hchhHHHH
Q psy14014        437 AEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ----STVIPKVV  512 (615)
Q Consensus       437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~i~~~l~  512 (615)
                      +..++|..-..+++.+..  +..|+    ...+..+.+.+.+++..+...|+..+..+.+++|..+..    ..++..+.
T Consensus        18 ~~~~dw~~il~icD~I~~--~~~~~----k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~   91 (145)
T d1dvpa1          18 RLEPDWPSILLICDEINQ--KDVTP----KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS   91 (145)
T ss_dssp             CSSCCHHHHHHHHHHHHT--TSSCH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhC--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHH
Confidence            446778654444444431  12222    234555677788999999999999999999999876432    34566666


Q ss_pred             hhhcC-CCchHHHHHHHHHHHHHhhhC
Q psy14014        513 AMSRD-QNYLHRMTCLFCINVLAEACG  538 (615)
Q Consensus       513 ~~~~d-~~~~~R~~a~~~l~~l~~~~~  538 (615)
                      .+... ....+|..++..+...+..++
T Consensus        92 ~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          92 SFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            65543 355678777777777776554

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.99  E-value=5.8  Score=30.16  Aligned_cols=101  Identities=6%  Similarity=0.066  Sum_probs=70.1

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014        254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK  333 (615)
Q Consensus       254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  333 (615)
                      +..++|..-..++..+..     . .......+-.+.+-+++.++.+...|+..+..+.++++...........++..+.
T Consensus        14 ~~~~dw~~il~icD~I~~-----~-~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~   87 (143)
T d1mhqa_          14 MSEQDWSAIQNFCEQVNT-----D-PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (143)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----S-SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            455778655444444432     1 1123467777888899999999999999999999999887655444456666777


Q ss_pred             HhhCC------CCHHHHHHHHHHHHhhchhhcc
Q psy14014        334 DLVAD------PNQHVKSALASVIMGLSPILGK  360 (615)
Q Consensus       334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g~  360 (615)
                      +++..      .+..||.-++..+...+..+..
T Consensus        88 ~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~  120 (143)
T d1mhqa_          88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (143)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            77653      4678998888887776665543

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=11  Score=32.99  Aligned_cols=133  Identities=14%  Similarity=0.170  Sum_probs=79.9

Q ss_pred             HHHHHHHHhHHHHhhh-ChHhHHHHHHHHHHHh-c---CCcchHHH-HHHHHHHHHHHHHhChHH------hhhchhHHH
Q psy14014        444 VRLAIIEYMPLLAGQL-GVEFFDEKLNALCMTW-L---VDHVYAIR-EAATLNLKKLVEQFGSEW------AQSTVIPKV  511 (615)
Q Consensus       444 vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~-l---~d~~~~vR-~~a~~~l~~l~~~~~~~~------~~~~i~~~l  511 (615)
                      ++...+..+....+.. ..+...+.++|.+++. +   ....+..| -..+.++..++..++...      ..+.+....
T Consensus        45 iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~T  124 (321)
T d1w9ca_          45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT  124 (321)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3344444444444332 2233444555555442 2   22334444 234556666666665431      123344444


Q ss_pred             HhhhcC---CCchHHHHHHHHHHHHHhhhChhhHH------HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014        512 VAMSRD---QNYLHRMTCLFCINVLAEACGPTVTA------NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL  576 (615)
Q Consensus       512 ~~~~~d---~~~~~R~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~  576 (615)
                      +++.++   ..|..|......+..+...+.+..+.      ..++..+.-..+.++++|...+..++..+....
T Consensus       125 l~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~  198 (321)
T d1w9ca_         125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV  198 (321)
T ss_dssp             HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Confidence            556555   57889999999999998877654432      345666666789999999999999998887654