Psyllid ID: psy14015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHVT
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
massdsapddslyPIAVLIDELKNEDVQLRLNSIKKLSTIALALGqertrgelipfltetiyDEDEVLLALAEQLgtftpnvggpeyvhcllppleslatvEETVVRDKAVESLRLISaqhsphdleaHFVPLVqrlasgdwftsrtsacglfsvcyprvtAGVKAELRSHFRnlcqddtpmqqghvwecgsgVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSvqivdhkfcpnnefhpleLHVISATTLRLMRHVT
Flexible Loop (DISEMBL)
massdsapddslYPIAVLIDELKNEDVQLRLNSIKKLSTIAlalgqertrgelIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHVT
Low Complexity Region (SEG)
MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHVT
Disordered region (IsUnstruct)
***********LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRL*****
Disordered Region (DISOPRED)
**********SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHV*
Disordered Region (DISEMBL)
*********DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHVT
Disordered Region (DISPRO)
*********DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
P54612	589	Serine/threonine-protein	yes	N/A	0.792	0.427	0.746	1e-114
Q76MZ3	589	Serine/threonine-protein	yes	N/A	0.792	0.427	0.746	1e-114
P30153	589	Serine/threonine-protein	yes	N/A	0.792	0.427	0.746	1e-114
Q32PI5	589	Serine/threonine-protein	yes	N/A	0.792	0.427	0.746	1e-114
P36179	591	Serine/threonine-protein	yes	N/A	0.798	0.429	0.728	1e-112
Q4QQT4	601	Serine/threonine-protein	no	N/A	0.773	0.409	0.735	1e-111
P54613	602	Serine/threonine-protein	no	N/A	0.773	0.408	0.731	1e-110
Q7TNP2	601	Serine/threonine-protein	no	N/A	0.764	0.404	0.732	1e-109
P30154	601	Serine/threonine-protein	no	N/A	0.767	0.405	0.715	1e-107
Q09543	590	Probable serine/threonine	yes	N/A	0.808	0.435	0.591	2e-89

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.
Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P36179|2AAA_DROME Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster GN=Pp2A-29B PE=2 SV=4

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/284 (72%), Positives = 226/284 (79%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SD + DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG+ERTR ELIPFLTET
Sbjct: 1   MAASDKSVDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGEERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALA+QLG FT  VGGPE+   L+PPLESLATVEETVVRDKAVESLR ++A+
Sbjct: 61  IYDEDEVLLALADQLGNFTSLVGGPEFAMYLIPPLESLATVEETVVRDKAVESLRTVAAE 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE H VP +QRL SGDWFTSRTSACGLFSVCYPRVT  VKAELR++FR LCQD  
Sbjct: 121 HSAQDLEIHVVPTLQRLVSGDWFTSRTSACGLFSVCYPRVTQPVKAELRANFRKLCQD-- 178

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                       +TPMVRRAAA KLGE AKVVE +YLK+D+IP 
Sbjct: 179 ----------------------------ETPMVRRAAANKLGEFAKVVETEYLKSDLIPN 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQD+QDSVRLLAVEACVSIA LL Q DVE LV+PTLRQC+
Sbjct: 211 FVQLAQDDQDSVRLLAVEACVSIAQLLPQDDVEHLVLPTLRQCA 254

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/276 (73%), Positives = 222/276 (80%), Gaps = 30/276 (10%)

Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEA
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188
           HFVPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDT        
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDT-------- 190

Query: 189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248
                                 PMVRRAAA KLGE AKV+E+D +KT+I+P+F NLA DE
Sbjct: 191 ----------------------PMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDE 228

Query: 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           QDSVRLLAVEACVSIA LLSQ D+E LVMPTLRQ +
Sbjct: 229 QDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAA 264

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/276 (73%), Positives = 222/276 (80%), Gaps = 30/276 (10%)

Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEA
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188
           HFVPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDT        
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDT-------- 191

Query: 189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248
                                 PMVRRAAA KLGE AKV+E+D +K++I+P+F NLA DE
Sbjct: 192 ----------------------PMVRRAAASKLGEFAKVLELDSVKSEIVPLFTNLASDE 229

Query: 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           QDSVRLLAVEACVSIA LLSQ D+E LVMPTLRQ +
Sbjct: 230 QDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAA 265

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|Q7TNP2|2AAB_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=1 SV=2

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/273 (73%), Positives = 219/273 (80%), Gaps = 30/273 (10%)

Query: 12  LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLAL 71
           LYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLAL
Sbjct: 22  LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLAL 81

Query: 72  AEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
           AEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEAHFV
Sbjct: 82  AEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFV 141

Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG 191
           PLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDT           
Sbjct: 142 PLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDT----------- 190

Query: 192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251
                              PMVRRAAA KLGE AKV+E+D +KT+I+P+F NLA DEQDS
Sbjct: 191 -------------------PMVRRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDS 231

Query: 252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           VRLLAVEACVSIA LLSQ D+E LVMPTLRQ +
Sbjct: 232 VRLLAVEACVSIAQLLSQEDLEALVMPTLRQAA 264

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Mus musculus (taxid: 10090)

>sp|P30154|2AAB_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/274 (71%), Positives = 219/274 (79%), Gaps = 30/274 (10%)

Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLA
Sbjct: 21  SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA 80

Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
           LAEQLG FT  VGGP++ HCLLPPLE+LATVEETVVRDKAVESLR IS +H+P  LEA+F
Sbjct: 81  LAEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRDKAVESLRQISQEHTPVALEAYF 140

Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWEC 190
           VPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R  FR+LC DD           
Sbjct: 141 VPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQQFRSLCSDD----------- 189

Query: 191 GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250
                              TPMVRRAAA KLGE AKV+E+D +K++I+P+F +LA DEQD
Sbjct: 190 -------------------TPMVRRAAASKLGEFAKVLELDSVKSEIVPLFTSLASDEQD 230

Query: 251 SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           SVRLLAVEACVSIA LLSQ D+E LVMPTLRQ +
Sbjct: 231 SVRLLAVEACVSIAQLLSQDDLETLVMPTLRQAA 264

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Homo sapiens (taxid: 9606)

>sp|Q09543|2AAA_CAEEL Probable serine/threonine-protein phosphatase PP2A regulatory subunit OS=Caenorhabditis elegans GN=paa-1 PE=3 SV=2

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/291 (59%), Positives = 208/291 (71%), Gaps = 34/291 (11%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           M+  + A DD+LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALG ERTR ELI FLT+T
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLL LAEQLG FTP VGGP++VHCLL PLE+LATVEETVVRDKAVESLR I+ +
Sbjct: 61  IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS   LE HFVP+++RLA+GDWFTSRTSACGLFSV YPRV+  +K+EL+S FR LC+DD 
Sbjct: 121 HSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPMVRRAAA KLGE AKV E   +   +   
Sbjct: 180 -----------------------------TPMVRRAAAAKLGEFAKVFEKTAVIEGLHSS 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHK 291
             +L  DEQDSVRLL VE+ ++  +LL +++ ++L+ P L    +++ D K
Sbjct: 211 LTDLHVDEQDSVRLLTVESAIAFGTLLDKANKKKLIEPIL----IELFDDK 257

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
307189141	601	Serine/threonine-protein phosphatase 2A	0.798	0.422	0.788	1e-122
322787434	589	hypothetical protein SINV_04974 [Solenop	0.798	0.431	0.785	1e-121
332020375	603	Serine/threonine-protein phosphatase 2A	0.798	0.421	0.785	1e-121
307201783	590	Serine/threonine-protein phosphatase 2A	0.798	0.430	0.785	1e-121
156547500	590	PREDICTED: serine/threonine-protein phos	0.798	0.430	0.785	1e-120
318087110	302	putative protein phosphatase 2A regulato	0.798	0.841	0.760	1e-116
86515392	590	protein phosphatase 2, regulatory subuni	0.798	0.430	0.75	1e-116
332376827	600	unknown [Dendroctonus ponderosae]	0.798	0.423	0.75	1e-116
242024239	566	serine/threonine-protein phosphatase PP2	0.795	0.446	0.759	1e-115
328782568	590	PREDICTED: serine/threonine-protein phos	0.798	0.430	0.75	1e-115

>gi|307189141|gb|EFN73589.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Camponotus floridanus]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/284 (78%), Positives = 238/284 (83%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV+  +KAELR+HFR+LCQDD 
Sbjct: 121 HSPADLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVSPAIKAELRNHFRSLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPM RR+AA KLGE AKVVE++YLK+D+IPM
Sbjct: 180 -----------------------------TPMARRSAASKLGEFAKVVEIEYLKSDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQDEQDSVRLLAVEACVSIA+LL Q DVEQLVMPTLRQC+
Sbjct: 211 FVILAQDEQDSVRLLAVEACVSIAALLQQEDVEQLVMPTLRQCA 254

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787434|gb|EFZ13522.1| hypothetical protein SINV_04974 [Solenopsis invicta]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/284 (78%), Positives = 238/284 (83%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSNTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPE+VHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEFVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV+  +KAELR+HFR+LCQDD 
Sbjct: 121 HSPADLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVSPAIKAELRNHFRSLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPM RR+AA KLGE AKVVE++YLK+D+IPM
Sbjct: 180 -----------------------------TPMARRSAASKLGEFAKVVEIEYLKSDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQDEQDSVRLLAVEACVSIA+LL Q DVEQLVMPTLRQC+
Sbjct: 211 FVILAQDEQDSVRLLAVEACVSIAALLQQEDVEQLVMPTLRQCA 254

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020375|gb|EGI60796.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Acromyrmex echinatior]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/284 (78%), Positives = 238/284 (83%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSNTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPE+VHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEFVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV+  +KAELR+HFR+LCQDD 
Sbjct: 121 HSPADLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVSPVIKAELRNHFRSLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPM RR+AA KLGE AKVVE++YLK+D+IPM
Sbjct: 180 -----------------------------TPMARRSAASKLGEFAKVVEIEYLKSDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQDEQDSVRLLAVEACVSIA+LL Q DVEQLVMPTLRQC+
Sbjct: 211 FVILAQDEQDSVRLLAVEACVSIAALLQQEDVEQLVMPTLRQCA 254

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201783|gb|EFN81456.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Harpegnathos saltator]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/284 (78%), Positives = 235/284 (82%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV   +K ELR+HFR LCQDD 
Sbjct: 121 HSPVDLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVGPAIKTELRNHFRGLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPM RR+AA KLGE AKVVE++YLK+D+IPM
Sbjct: 180 -----------------------------TPMARRSAASKLGEFAKVVEIEYLKSDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQDEQDSVRLLAVEACVSIA+LL Q DVEQLVMPTLRQC+
Sbjct: 211 FVILAQDEQDSVRLLAVEACVSIAALLQQEDVEQLVMPTLRQCA 254

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547500|ref|XP_001600229.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Nasonia vitripennis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/284 (78%), Positives = 236/284 (83%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSTADDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRTELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGP+YVHCLLPPLESLATVEETVVRDKAVESLR I++Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPDYVHCLLPPLESLATVEETVVRDKAVESLRNIASQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRLASGDWFTSRTSACGLFSVCY RV+  +KAELR+HFRNLCQDD 
Sbjct: 121 HSPSDLEEHFVPLVQRLASGDWFTSRTSACGLFSVCYYRVSQPIKAELRNHFRNLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPMVRR+AA KLGE AKVVE +YLK+D+I M
Sbjct: 180 -----------------------------TPMVRRSAAAKLGEFAKVVENEYLKSDLIAM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQDEQDSVRLLAVEACVSIA+LL Q DVEQLVMPTLRQC+
Sbjct: 211 FVILAQDEQDSVRLLAVEACVSIATLLQQEDVEQLVMPTLRQCA 254

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318087110|gb|ADV40147.1| putative protein phosphatase 2A regulatory subunit A [Latrodectus hesperus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/284 (76%), Positives = 232/284 (81%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MASSDS  DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR ELIPFLT+T
Sbjct: 1   MASSDSNTDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTDT 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFTP VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS Q
Sbjct: 61  IYDEDEVLLALAEQLGTFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRNISQQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE HFVPLV+RLASGDWFTSRTSACGLFSVCY R++A +KAELR+HFRNLCQDD 
Sbjct: 121 HSAADLEQHFVPLVKRLASGDWFTSRTSACGLFSVCYSRLSAPLKAELRNHFRNLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPMVRRAAA KLGE A VVE+DY+K+D+IPM
Sbjct: 180 -----------------------------TPMVRRAAANKLGEFAYVVELDYVKSDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           + NLAQDEQDSVRLLAVEAC+SI+ LL Q D+EQ VMP LRQ +
Sbjct: 211 WANLAQDEQDSVRLLAVEACISISELLPQDDIEQFVMPILRQAA 254

Source: Latrodectus hesperus

Species: Latrodectus hesperus

Genus: Latrodectus

Family: Theridiidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|86515392|ref|NP_001034525.1| protein phosphatase 2, regulatory subunit A, alpha isoform [Tribolium castaneum] gi|60098058|emb|CAI45288.1| phosphatase [Tribolium castaneum] gi|270013845|gb|EFA10293.1| hypothetical protein TcasGA2_TC012508 [Tribolium castaneum]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/284 (75%), Positives = 232/284 (81%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDSA DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSAGDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLG+F   VGGPEY +CLLPPLESLATVEETVVRDKAVESLR ++ Q
Sbjct: 61  IYDEDEVLLALAEQLGSFITLVGGPEYAYCLLPPLESLATVEETVVRDKAVESLRAVAQQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLVQRL++GDWFTSRTSACGLFSVCYPRV+A +KA+LRSHFR LCQDD 
Sbjct: 121 HSPADLENHFVPLVQRLSAGDWFTSRTSACGLFSVCYPRVSAQMKADLRSHFRALCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPMVRRAAA KLGELA+VVE++YLKTD+IPM
Sbjct: 180 -----------------------------TPMVRRAAATKLGELAQVVELEYLKTDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F++L QDEQDSVRLLAVEACVS ASL  Q D+E  VMPT+R C+
Sbjct: 211 FLSLTQDEQDSVRLLAVEACVSFASLFQQEDIEMFVMPTVRNCT 254

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376827|gb|AEE63553.1| unknown [Dendroctonus ponderosae]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/284 (75%), Positives = 233/284 (82%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDSA DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDSAGDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGLERTRIELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLG F P VGGPEY +CLLPPLESLATVEETVVRDKAVESLR ++ Q
Sbjct: 61  IYDEDEVLLALAEQLGQFIPLVGGPEYAYCLLPPLESLATVEETVVRDKAVESLRAVAQQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLE HFVPLV+RL+SGDWFTSRTS CGLF+ CYPRV+A VK +LR+HF+ LCQDD 
Sbjct: 121 HSPADLETHFVPLVERLSSGDWFTSRTSGCGLFAACYPRVSAHVKTDLRAHFKALCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPMVRRAAA KLGE A+V+E++YLK+D+IPM
Sbjct: 180 -----------------------------TPMVRRAAATKLGEFAQVLELEYLKSDLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FVNLAQDEQDSVRLLAVEA V+IA+LLSQ D EQLVMPTLRQC+
Sbjct: 211 FVNLAQDEQDSVRLLAVEASVTIATLLSQEDAEQLVMPTLRQCT 254

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024239|ref|XP_002432536.1| serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit, putative [Pediculus humanus corporis] gi|212517988|gb|EEB19798.1| serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit, putative [Pediculus humanus corporis]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 232/283 (81%), Gaps = 30/283 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SD + DDSLYPIAVLIDELKNEDVQLRLNS+KKLSTIALALG ERTR ELIPFLTET
Sbjct: 1   MAASDQSGDDSLYPIAVLIDELKNEDVQLRLNSLKKLSTIALALGVERTRRELIPFLTET 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLG FT  +GGPEYVHCLLPPLESLA VEETVVRDKAVESLR+ISAQ
Sbjct: 61  IYDEDEVLLALAEQLGNFTNLIGGPEYVHCLLPPLESLAMVEETVVRDKAVESLRIISAQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLVQRLA GDWFT RTSAC LFSV YPRV++ VKA+LRSHFR LCQDD 
Sbjct: 121 HSPSDLEAHFVPLVQRLAVGDWFTCRTSACALFSVSYPRVSSAVKADLRSHFRTLCQDD- 179

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                        TPMVRRAAA KLGE AKVVE++YLK ++IPM
Sbjct: 180 -----------------------------TPMVRRAAACKLGEFAKVVELEYLKCELIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
           FV+L+QDEQDSVRLLAV+ACV+IA+LL Q DVEQLVMPTLR C
Sbjct: 211 FVSLSQDEQDSVRLLAVDACVTIATLLPQEDVEQLVMPTLRLC 253

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782568|ref|XP_001120202.2| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis mellifera] gi|380013196|ref|XP_003690652.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis florea]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/284 (75%), Positives = 230/284 (80%), Gaps = 30/284 (10%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA+SDS  DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG ERTR ELIPFLTE+
Sbjct: 1   MAASDSTTDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGIERTRSELIPFLTES 60

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           +YDEDEVLLALAEQLG FTP VGGPEYVHCLL PLESLATVEETVVRDKAVESLR I+AQ
Sbjct: 61  MYDEDEVLLALAEQLGQFTPLVGGPEYVHCLLKPLESLATVEETVVRDKAVESLRTIAAQ 120

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HS  DLE  FVPL+ RLA+GDWFTSRTSACGLFSVCYPRV+  VKA LR+HFRNLCQDDT
Sbjct: 121 HSSTDLEEQFVPLIHRLATGDWFTSRTSACGLFSVCYPRVSPTVKACLRNHFRNLCQDDT 180

Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PM RR+AA  LGE AKV+E++Y+K D+IPM
Sbjct: 181 ------------------------------PMARRSAASHLGEFAKVMEIEYVKADLIPM 210

Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           FV LAQDEQDSVRLLA+EACVSIA+LL Q DVEQLVMPTLRQC+
Sbjct: 211 FVILAQDEQDSVRLLAIEACVSIAALLPQEDVEQLVMPTLRQCA 254

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.896	0.483	0.593	4.4e-84
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.896	0.483	0.593	4.4e-84
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.896	0.483	0.593	4.4e-84
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.896	0.483	0.593	4.4e-84
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.896	0.483	0.593	4.4e-84
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.896	0.483	0.593	4.4e-84
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.896	0.483	0.593	4.4e-84
RGD|1304764	601	Ppp2r1b "protein phosphatase 2	0.874	0.462	0.600	1.4e-80
ZFIN|ZDB-GENE-040426-2700	589	ppp2r1a "protein phosphatase 2	0.896	0.483	0.586	1.4e-80
MGI|MGI:1920949	601	Ppp2r1b "protein phosphatase 2	0.874	0.462	0.597	3.7e-80

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 217/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACV----SIASLLSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +       ++   ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 216/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 216/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 216/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 216/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 216/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/300 (59%), Positives = 216/300 (72%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct:   119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query:   181 PM-QQGHVWECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+E+   F NL  D+   VR  A      +A+++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       ++ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

RGD|1304764 Ppp2r1b "protein phosphatase 2, regulatory subunit A, beta" [Rattus norvegicus (taxid:10116)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 176/293 (60%), Positives = 207/293 (70%)

Query:     9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
             DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct:    19 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query:    69 LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
             LALAEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEA
Sbjct:    79 LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query:   129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ---- 184
             HFVPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDTPM +    
Sbjct:   139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query:   185 ---GH---VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII 238
                G    V E  S VK E+   F NL  D+   VR  A      +A+++  D L+  ++
Sbjct:   199 SKLGEFAKVLELDS-VKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVM 257

Query:   239 PMFVNLAQDEQDSVRLLAV----EACVSIASLLSQSDVEQLVMPTLRQCSVQI 287
             P     A+D+   VR +      E   ++   ++ SD+       LR C  ++
Sbjct:   258 PTLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEV 310

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:2001241 "positive regulation of extrinsic apoptotic signaling pathway in absence of ligand" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-2700 ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Danio rerio (taxid:7955)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 176/300 (58%), Positives = 212/300 (70%)

Query:     1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
             MA +DS  DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct:     1 MAGADS--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDT 58

Query:    61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
             IYDEDEVLLALAEQLG FT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct:    59 IYDEDEVLLALAEQLGNFTMLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRKISHE 118

Query:   121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
             HSP DLE HF PLV+RLASGDWFTSRTSACGLFSVCYPRV++ VKAE+R HFR LC DDT
Sbjct:   119 HSPVDLEVHFEPLVKRLASGDWFTSRTSACGLFSVCYPRVSSTVKAEIRQHFRTLCSDDT 178

Query:   181 PM-QQGHVWECGSG--------VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
             PM ++    + G          VK+++ S F  L  D+   VR  A      +A ++  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELEYVKSDIISLFTALASDEQDSVRLLAVEAGVSIATLLPQE 238

Query:   232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLVMPTLRQCSVQI 287
              L+  ++P     A+D+   VR +  +    +       ++++D+       L+ C  ++
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFSDLQKAVGPEITKNDLVPAFQNLLKDCEAEV 298

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1920949 Ppp2r1b "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform" [Mus musculus (taxid:10090)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 175/293 (59%), Positives = 207/293 (70%)

Query:     9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
             DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct:    19 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query:    69 LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
             LALAEQLG FT  VGGP++ HCLLPPLESLATVEETVVRDKAVESLR IS +H+P  LEA
Sbjct:    79 LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query:   129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ---- 184
             HFVPLV+RLASGDWFTSRTSACGLFSVCYPR +  VKAE+R HFR+LC DDTPM +    
Sbjct:   139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query:   185 ---GH---VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII 238
                G    V E  S VK E+   F NL  D+   VR  A      +A+++  + L+  ++
Sbjct:   199 SKLGEFAKVLELDS-VKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQEDLEALVM 257

Query:   239 PMFVNLAQDEQDSVRLLAV----EACVSIASLLSQSDVEQLVMPTLRQCSVQI 287
             P     A+D+   VR +      E   ++   ++ SD+       LR C  ++
Sbjct:   258 PTLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEV 310

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:2001241 "positive regulation of extrinsic apoptotic signaling pathway in absence of ligand" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32PI5	2AAA_BOVIN	No assigned EC number	0.7464	0.7924	0.4278	yes	N/A
P30153	2AAA_HUMAN	No assigned EC number	0.7464	0.7924	0.4278	yes	N/A
P36179	2AAA_DROME	No assigned EC number	0.7288	0.7987	0.4297	yes	N/A
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.7464	0.7924	0.4278	yes	N/A
Q09543	2AAA_CAEEL	No assigned EC number	0.5910	0.8081	0.4355	yes	N/A
Q38950	2AAB_ARATH	No assigned EC number	0.5490	0.7704	0.4173	yes	N/A
P54612	2AAA_PIG	No assigned EC number	0.7464	0.7924	0.4278	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	318
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.002

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 211 PMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263
             VR AAA  LG LA      +     +++P  + L +D+ D VR  A  A   I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG0211|consensus	759		99.92
KOG0211|consensus	759		99.81
PRK09687	280	putative lyase; Provisional	99.79
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.72
PRK09687	280	putative lyase; Provisional	99.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.68
KOG1240|consensus	1431		99.61
KOG2171|consensus	1075		99.54
KOG2023|consensus	885		99.46
KOG2171|consensus	1075		99.45
KOG1240|consensus	1431		99.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.33
KOG1243|consensus	690		99.23
KOG1242|consensus	569		99.23
KOG2023|consensus	885		99.19
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.14
KOG1242|consensus	569		99.1
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.07
KOG2259|consensus	823		99.06
PTZ00429	746	beta-adaptin; Provisional	99.03
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.02
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.02
TIGR02270	410	conserved hypothetical protein. Members are found	99.0
KOG0166|consensus	514		98.98
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.98
TIGR02270	410	conserved hypothetical protein. Members are found	98.97
KOG1243|consensus	690		98.94
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.92
KOG1824|consensus	1233		98.9
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.9
KOG1241|consensus	859		98.89
PTZ00429	746	beta-adaptin; Provisional	98.84
KOG0166|consensus	514		98.82
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.76
KOG1241|consensus	859		98.76
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.76
KOG0213|consensus	1172		98.68
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.64
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.61
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.57
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.53
KOG0213|consensus	1172		98.53
KOG0567|consensus	289		98.45
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.4
KOG4224|consensus	550		98.37
KOG1824|consensus	1233		98.37
KOG0212|consensus	675		98.36
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.36
KOG0915|consensus	1702		98.35
KOG0915|consensus	1702		98.35
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.35
KOG2137|consensus	700		98.35
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.34
KOG1060|consensus	968		98.32
KOG2956|consensus	516		98.31
KOG2259|consensus	823		98.29
KOG0212|consensus	675		98.27
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.25
KOG1060|consensus	968		98.25
KOG1820|consensus	815		98.25
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.25
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.22
KOG4224|consensus	550		98.21
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.21
KOG0567|consensus	289		98.18
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.17
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.16
KOG1820|consensus	815		98.14
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.11
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.07
KOG1061|consensus	734		98.07
KOG2062|consensus	929		98.06
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.06
KOG1059|consensus	877		98.05
KOG2032|consensus	533		97.97
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.96
KOG4653|consensus	982		97.95
KOG1062|consensus	866		97.95
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.92
KOG2032|consensus	533		97.92
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.89
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.86
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.83
KOG2137|consensus	700		97.82
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.79
KOG1078|consensus	865		97.74
KOG4653|consensus	982		97.73
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.69
PF05004	309	IFRD: Interferon-related developmental regulator (	97.68
KOG1949|consensus	1005		97.61
PF05004	309	IFRD: Interferon-related developmental regulator (	97.6
KOG2025|consensus	892		97.56
KOG1943|consensus	1133		97.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.53
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.52
KOG1949|consensus	1005		97.5
KOG2062|consensus	929		97.47
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.46
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.4
KOG1248|consensus	1176		97.36
KOG1061|consensus	734		97.33
KOG2956|consensus	516		97.3
KOG1517|consensus	1387		97.29
KOG1059|consensus	877		97.28
KOG1062|consensus	866		97.17
KOG1078|consensus	865		97.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.11
KOG1967|consensus	1030		97.05
KOG2933|consensus	334		96.93
KOG1248|consensus	1176		96.91
KOG0168|consensus	1051		96.89
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.82
KOG2025|consensus	892		96.78
KOG1967|consensus	1030		96.74
KOG1058|consensus	948		96.73
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.72
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.63
KOG1517|consensus	1387		96.6
KOG1943|consensus	1133		96.55
KOG1077|consensus	938		96.51
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.49
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.46
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.3
KOG4413|consensus	524		96.27
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.21
PF05804	708	KAP: Kinesin-associated protein (KAP)	96.19
KOG0414|consensus	1251		96.16
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	95.95
KOG0946|consensus	970		95.82
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.78
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	95.77
KOG0414|consensus	1251		95.77
KOG1058|consensus	948		95.63
KOG1077|consensus	938		95.59
KOG4535|consensus	728		95.53
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.44
KOG0413|consensus	1529		95.35
KOG0946|consensus	970		95.33
KOG0392|consensus	1549		95.33
KOG2933|consensus	334		95.26
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.22
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.15
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.13
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.0
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.98
KOG1293|consensus	678		94.96
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.85
KOG1822|consensus	2067		94.82
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.8
KOG1525|consensus	1266		94.75
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.74
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.71
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.65
KOG1020|consensus	1692		94.57
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.54
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.51
KOG1822|consensus	2067		94.45
KOG1525|consensus	1266		94.35
KOG2213|consensus	460		94.31
KOG0392|consensus	1549		94.3
KOG1020|consensus	1692		94.3
KOG1991|consensus	1010		94.22
PF05804	708	KAP: Kinesin-associated protein (KAP)	94.06
KOG1293|consensus	678		93.96
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	93.78
KOG1993|consensus	978		93.77
KOG1991|consensus	1010		93.75
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.45
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	93.44
KOG0413|consensus	1529		93.43
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.3
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.05
KOG4413|consensus	524		92.93
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	92.75
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.7
KOG4535|consensus	728		92.63
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	92.56
KOG0168|consensus	1051		92.43
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	92.28
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.85
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.67
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	91.43
KOG2011|consensus	1048		91.41
KOG2274|consensus	1005		91.25
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	91.15
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.06
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.52
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.47
KOG2160|consensus	342		90.44
KOG2160|consensus	342		90.3
KOG1992|consensus	960		90.28
KOG2274|consensus	1005		90.18
KOG1848|consensus	1610		89.76
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	89.74
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	89.73
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	89.57
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	89.34
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	89.33
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	89.24
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.16
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.03
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	88.81
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	88.6
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	88.52
KOG2149|consensus	393		88.41
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	87.64
KOG2973|consensus	353		87.3
KOG2081|consensus	559		87.17
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	86.71
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	86.42
KOG3036|consensus	293		86.29
KOG1851|consensus	1710		86.28
KOG1837|consensus	1621		86.1
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	85.06
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	84.5
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	83.83
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	83.8
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	83.55
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	83.22
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	83.07
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	82.81
KOG2549|consensus	576		82.76
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	82.67
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	82.22
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	82.18
KOG1848|consensus	1610		82.08
KOG2149|consensus	393		81.98
KOG2213|consensus	460		80.55
KOG2005|consensus	878		80.29

>KOG0211|consensus

Probab=99.92  E-value=5.7e-24  Score=208.68  Aligned_cols=283  Identities=49%  Similarity=0.691  Sum_probs=258.6

Q ss_pred             CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccch
Q psy14015          9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYV   88 (318)
Q Consensus         9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~   88 (318)
                      ++++.||+.+++.+..++.+.|...++.+..++.++|++.++.+++|++.+.+.|+.+|...++.+++.+.+.+|++.+.
T Consensus        78 ~~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~  157 (759)
T KOG0211|consen   78 EDSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYA  157 (759)
T ss_pred             ccccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHH
Confidence            34699999999999999999999999999999999999988999999999999667779999999999999999999999


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC-cchHHH
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT-AGVKAE  167 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~~  167 (318)
                      ..++|.+..++.+++..||+++++++..++...+++...++++|++.++..++++..|.+++++++..+..+. ..++.+
T Consensus       158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e  237 (759)
T KOG0211|consen  158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE  237 (759)
T ss_pred             HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH
Confidence            9999999999999999999999999999999999988888999999999999878899999999999999988 668999


Q ss_pred             HHHHHHhhccCCCcccccchh----hcC-----ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-hhHhhH
Q psy14015        168 LRSHFRNLCQDDTPMQQGHVW----ECG-----SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-YLKTDI  237 (318)
Q Consensus       168 l~~~~~~l~~~~~~~vR~~v~----~~~-----~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~l  237 (318)
                      +...+.++|.|..|+||..+.    ..+     ...++.++|.+.++..|+...||.+|..++..+...+..+ .....+
T Consensus       238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~  317 (759)
T KOG0211|consen  238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL  317 (759)
T ss_pred             HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence            999999999999999998432    111     2456788999999999999999999999999999999877 777889


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccccc
Q psy14015        238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHK  291 (318)
Q Consensus       238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~  291 (318)
                      .+.+.++.+|++|.||..++..+..+...+|++.....+.|....+++|..+.+
T Consensus       318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~  371 (759)
T KOG0211|consen  318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEV  371 (759)
T ss_pred             hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhh
Confidence            999999999999999999999999999999997667788999999999944433

>KOG0211|consensus

Probab=99.81  E-value=3.6e-19  Score=175.06  Aligned_cols=285  Identities=16%  Similarity=0.182  Sum_probs=224.4

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC----cccchhc
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG----GPEYVHC   90 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~----~~~~~~~   90 (318)
                      +.+....++..+.+|........++...+|++..+.++.|.+..++.|.++ +|.+++.....++..+.    .+...+.
T Consensus       319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~  398 (759)
T KOG0211|consen  319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS  398 (759)
T ss_pred             HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence            356677788899999999999999999999987888889999999999888 99999999998888776    3445566


Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc----chHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKA  166 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~----~~~~  166 (318)
                      ++|.++.+..|.+..||.+.+..+..+...++.+.....++|.+...++|....||......+..+..-..+    -+..
T Consensus       399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~  478 (759)
T KOG0211|consen  399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN  478 (759)
T ss_pred             hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence            889999999999999999999888888888888777778888888888888888888777433222111000    0112


Q ss_pred             HHHHHHHhhccCCCcccccchh--------hcC-ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015        167 ELRSHFRNLCQDDTPMQQGHVW--------ECG-SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI  237 (318)
Q Consensus       167 ~l~~~~~~l~~~~~~~vR~~v~--------~~~-~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l  237 (318)
                      .....+.++..+....+|.++.        .++ +.+.+.+-+....-+.|.+..+|++|+.++..++..+|.+|....+
T Consensus       479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~  558 (759)
T KOG0211|consen  479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE  558 (759)
T ss_pred             hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence            2223333444443333333211        111 2345566677777788999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015        238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATT  310 (318)
Q Consensus       238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~  310 (318)
                      +|.+.....+++|.+|.+.+.++..+++.+|++.+.+.++|.+..+.+|          ..|+||+++++...
T Consensus       559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D----------~vanVR~nvak~L~  621 (759)
T KOG0211|consen  559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD----------PVANVRINVAKHLP  621 (759)
T ss_pred             hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC----------CchhhhhhHHHHHH
Confidence            9999999899999999999999999999999999999999999999999          99999999987543

>PRK09687 putative lyase; Provisional

Probab=99.79  E-value=6e-18  Score=151.24  Aligned_cols=247  Identities=16%  Similarity=0.122  Sum_probs=187.9

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-hhcc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-VHCL   91 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-~~~l   91 (318)
                      .+..+++.|.+++..+|..++..|..+    |.    ....+.+.++++|+++ +|..++..|+.+..    +.. ....
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~----~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~----~~~~~~~a   91 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLR----GG----QDVFRLAIELCSSKNPIERDIGADILSQLGM----AKRCQDNV   91 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhc----Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CccchHHH
Confidence            467888999999999999999999886    43    3467777788888777 99999999998743    211 2457


Q ss_pred             chHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015         92 LPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS  170 (318)
Q Consensus        92 lp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~  170 (318)
                      +|.|..+ .+|+++.||..|+.+|+.++.....  .....++.+.....|++|.||..++..|+++-    .   .....
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~---~~ai~  162 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D---EAAIP  162 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C---HHHHH
Confidence            7888776 7899999999999999998643221  11225556667788999999999999998652    1   12234


Q ss_pred             HHHhhccCCCcccccc-hhhcCc--cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015        171 HFRNLCQDDTPMQQGH-VWECGS--GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD  247 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~-v~~~~~--~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D  247 (318)
                      .+..+..|.++.||.. +..+|.  .......+.+..+++|+++.||..|+.+||++..        ...+|.+.+.++|
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li~~L~~  234 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLIKELKK  234 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHHHHHcC
Confidence            5556667888888874 445553  2356788999999999999999999999998653        4688888889998


Q ss_pred             CcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc-ccccccccCCCCCCchhhHHhhhh
Q psy14015        248 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV-QIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       248 ~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~-D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +.  +|..++.+++.+..        ...+|.|.++++ +          +++.|+-.+++..
T Consensus       235 ~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~----------~d~~v~~~a~~a~  277 (280)
T PRK09687        235 GT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKF----------DDNEIITKAIDKL  277 (280)
T ss_pred             Cc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhC----------CChhHHHHHHHHH
Confidence            87  67777888887773        357899999997 7          7888888887653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.72  E-value=2.6e-16  Score=161.82  Aligned_cols=246  Identities=19%  Similarity=0.133  Sum_probs=148.2

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      .++.+++.|+|+++.+|..+++.|+++    ++    ...+|.|.++++|+++ ||..++..|..+......       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~----~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTET----TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhh----cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            357888999999999999999999986    33    2367788888888877 999999999877532211       1


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc---------cCcc
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR---------VTAG  163 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~---------~~~~  163 (318)
                      +.+...+.|+++.||..|+.+|..+...-         .+.+..+++|+++.+|..|+..|+.+-..         -...
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~  757 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAGD---------AALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENRE  757 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccCC---------HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHH
Confidence            34445556666777777777666553110         01122344455555555555554432100         0001


Q ss_pred             hHHHHH--------------HHHHhhccCCCcccccc-hhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015        164 VKAELR--------------SHFRNLCQDDTPMQQGH-VWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKV  227 (318)
Q Consensus       164 ~~~~l~--------------~~~~~l~~~~~~~vR~~-v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~  227 (318)
                      +|..++              ..+..+.+|.++.||.. +..++.... ..+.+.+...++|++|.||..|+.+|+.+.. 
T Consensus       758 VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-  836 (897)
T PRK13800        758 VRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-  836 (897)
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-
Confidence            111111              22334455555666653 222332221 2334556677777777777777777776542 


Q ss_pred             hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        228 VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       228 ~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                             +..++.+..+++|+++.||..++.+|+.+.   ++    ....+.|..+++|          ++++||..+++
T Consensus       837 -------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~al~D----------~d~~Vr~~A~~  892 (897)
T PRK13800        837 -------DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTALTD----------SDADVRAYARR  892 (897)
T ss_pred             -------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHHHhC----------CCHHHHHHHHH
Confidence                   335577777778888888888877777741   11    2245667777888          78888877765


Q ss_pred             h
Q psy14015        308 A  308 (318)
Q Consensus       308 ~  308 (318)
                      .
T Consensus       893 a  893 (897)
T PRK13800        893 A  893 (897)
T ss_pred             H
Confidence            4

>PRK09687 putative lyase; Provisional

Probab=99.70  E-value=5.6e-16  Score=138.57  Aligned_cols=210  Identities=15%  Similarity=0.076  Sum_probs=161.2

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH  129 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  129 (318)
                      ..-++.|..++.|++. ||..++..|+.+.    .    +.+++.+..++.|++..||..|+.+|..+...-..   ...
T Consensus        22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~   90 (280)
T PRK09687         22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG----G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDN   90 (280)
T ss_pred             hccHHHHHHHHhCCCHHHHHHHHHHHHhcC----c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHH
Confidence            3335556666677776 9999999999774    2    44677888899999999999999999998753211   123


Q ss_pred             HHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhc
Q psy14015        130 FVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       130 ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      .+|.+..+ .+|+++.||.+|+..||.+...-... ...+.+.+.....|..+.||.. +..++.......++.+..+++
T Consensus        91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~  169 (280)
T PRK09687         91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK  169 (280)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence            66777766 78999999999999999875332211 1233345556677778889985 455666666889999999999


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      |+++.||..|+.+||.+..  +    .....|.+..+++|+++.||..++.+++.+.        ....+|.|+..|+|
T Consensus       170 d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li~~L~~  234 (280)
T PRK09687        170 DPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVLIKELKK  234 (280)
T ss_pred             CCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHHHHHHcC
Confidence            9999999999999999821  1    1357888999999999999999999988754        23578999999998

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.68  E-value=9.1e-16  Score=157.82  Aligned_cols=217  Identities=15%  Similarity=0.057  Sum_probs=143.1

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH------------hHhhc-----------hhhhhhhhcCChHH-HHHH
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE------------RTRGE-----------LIPFLTETIYDEDE-VLLA   70 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~------------~~~~~-----------llp~l~~l~~D~~~-VR~~   70 (318)
                      ++.+...|+|+++.+|..++..|.++.......            ..+..           -.+.+.+.+.|+++ ||.+
T Consensus       654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~  733 (897)
T PRK13800        654 GPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIE  733 (897)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHH
Confidence            567778888999999999988888774221111            00000           01222334455444 5555


Q ss_pred             HHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhh
Q psy14015         71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSAC  150 (318)
Q Consensus        71 aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~  150 (318)
                      ++..|+.+.    .       .+.+..++.|++..||..++.+|..+...-.      ..+|.+.++++|+++.+|.+|+
T Consensus       734 Av~aL~~~~----~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~  796 (897)
T PRK13800        734 AVRALVSVD----D-------VESVAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAAL  796 (897)
T ss_pred             HHHHHhccc----C-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHH
Confidence            555555431    1       1234455677777777777777766654311      1356677888998899999999


Q ss_pred             hhhhhhccccCcchHHHHHHHHHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015        151 GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE  229 (318)
Q Consensus       151 ~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~  229 (318)
                      ..|+.+...  .    .+...+....+|.++.||.. +..++..-....++.+..+++|+++.||+.++.+|+.+.   +
T Consensus       797 ~aLg~~g~~--~----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~  867 (897)
T PRK13800        797 AALAELGCP--P----DDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP---G  867 (897)
T ss_pred             HHHHhcCCc--c----hhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C
Confidence            988866321  1    11122344556777888974 444444444667899999999999999999999999972   1


Q ss_pred             hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHH
Q psy14015        230 VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV  261 (318)
Q Consensus       230 ~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~  261 (318)
                      .    ....+.+..+++|++..||+.++.+|.
T Consensus       868 ~----~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        868 D----PAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             C----HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            1    357888999999999999999999875

>KOG1240|consensus

Probab=99.61  E-value=1.7e-14  Score=143.66  Aligned_cols=238  Identities=16%  Similarity=0.230  Sum_probs=181.9

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC------cccchh
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG------GPEYVH   89 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~------~~~~~~   89 (318)
                      +-+..++.  .+.++++++-|.+.+..+..+.....++||+..+..|++. ||.+|.+.|.++...+.      ..-+.+
T Consensus       429 s~IR~lk~--~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e  506 (1431)
T KOG1240|consen  429 SCIRALKT--IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE  506 (1431)
T ss_pred             HHHHhhhc--chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence            33444444  3456699999999998888888889999999999999998 99999999988766543      245678


Q ss_pred             ccchHHhhhccC-chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-----hhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         90 CLLPPLESLATV-EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-----LASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        90 ~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-----l~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      +|+|-|..|+.| ....||.+-+.+|..++.....      ++.....     +.++++-.   .+...       ..+.
T Consensus       507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r------Fle~~q~~~~~g~~n~~nse---t~~~~-------~~~~  570 (1431)
T KOG1240|consen  507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR------FLELTQELRQAGMLNDPNSE---TAPEQ-------NYNT  570 (1431)
T ss_pred             hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH------HHHHHHHHHhcccccCcccc---ccccc-------ccch
Confidence            999999999999 6788999999999999865321      2222222     23443211   00000       0000


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  243 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~  243 (318)
                      ...                          .....+-..+..|+.|+.+.||++..++++.++.+||++...+.|++.+..
T Consensus       571 ~~~--------------------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiT  624 (1431)
T KOG1240|consen  571 ELQ--------------------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLIT  624 (1431)
T ss_pred             HHH--------------------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHH
Confidence            011                          122344567788999999999999999999999999998877789999999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        244 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       244 ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      .++|.+|..|.++...|..++-++|...+.++++|.+.+.|.|          .++-|=.+++.+
T Consensus       625 fLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD----------~EE~Viv~aL~~  679 (1431)
T KOG1240|consen  625 FLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD----------GEEAVIVSALGS  679 (1431)
T ss_pred             HhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC----------cchhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999          666666555544

>KOG2171|consensus

Probab=99.54  E-value=1.2e-12  Score=130.84  Aligned_cols=269  Identities=17%  Similarity=0.111  Sum_probs=186.6

Q ss_pred             HHHHHhcCcc-HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc--chhccc
Q psy14015         17 VLIDELKNED-VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE--YVHCLL   92 (318)
Q Consensus        17 ~l~~~l~~~~-~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~--~~~~ll   92 (318)
                      ++++..+++. +.+|.+.++..+++++...++ .|.++++++.+..++.++ .|..+...|..+...+|...  +...+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            4555565554 679999999999999998888 899999999999999888 99999999999988888632  345788


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCC--hhH--HhhhHHHHHHHh----hcCCCchhhhhhhhhhhhhccccC---
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHS--PHD--LEAHFVPLVQRL----ASGDWFTSRTSACGLFSVCYPRVT---  161 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~~~--~~~~ilp~~~~l----~~d~~~~vR~~a~~~l~~~~~~~~---  161 (318)
                      +++.+-+.|++..||.+|+.++..++..++  ++.  ....++|.+..-    .++++...-..+.+.|..+....+   
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            999999999988899999999999999885  222  223366644332    222222222223233222222222   


Q ss_pred             ---------------------cchHHHHHHHHHhhccCCCccccc-------------chh-h-----------------
Q psy14015        162 ---------------------AGVKAELRSHFRNLCQDDTPMQQG-------------HVW-E-----------------  189 (318)
Q Consensus       162 ---------------------~~~~~~l~~~~~~l~~~~~~~vR~-------------~v~-~-----------------  189 (318)
                                           +..|..+.+.+..+.+..+.+.|.             ++. .                 
T Consensus       242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence                                 222332223232222222112221             000 0                 


Q ss_pred             ------------------cC-ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCC
Q psy14015        190 ------------------CG-SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDE  248 (318)
Q Consensus       190 ------------------~~-~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~  248 (318)
                                        ++ +..-.-+++.+-.+++.++|.-|+++..+|+.+++..+..  ...+.++|.+.+.++||
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP  401 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence                              00 0111235566677889999999999999999999865432  23578999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhccc
Q psy14015        249 QDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       249 ~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~D  286 (318)
                      ++.||.+|+.++++++..|.++.   +.+.+.|.+...+.|
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~  442 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS  442 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence            99999999999999999998864   334588888888887

>KOG2023|consensus

Probab=99.46  E-value=3.1e-12  Score=121.28  Aligned_cols=280  Identities=18%  Similarity=0.119  Sum_probs=196.7

Q ss_pred             CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHh---------------------------------------hChHhH
Q psy14015          9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALA---------------------------------------LGQERT   49 (318)
Q Consensus         9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~---------------------------------------lg~~~~   49 (318)
                      ++.|-.+..+++.-+|+|..+|..+...+-..-..                                       ++++ .
T Consensus         9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~-~   87 (885)
T KOG2023|consen    9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE-V   87 (885)
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH-H
Confidence            34566799999999999999999999988877210                                       1111 1


Q ss_pred             hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh----
Q psy14015         50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH----  124 (318)
Q Consensus        50 ~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~----  124 (318)
                      ...+...+..-+-|.++ +|...-..+..++..-| -..+..++|.+.+++..++...-+.|..+|.++++-....    
T Consensus        88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~  166 (885)
T KOG2023|consen   88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD  166 (885)
T ss_pred             HHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence            11222222233345555 66665555555554333 3456789999999999999999999999999998765431    


Q ss_pred             ---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch---HHHHHHHHHhhccCCCcccccchh-------h--
Q psy14015        125 ---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMQQGHVW-------E--  189 (318)
Q Consensus       125 ---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~l~~~~~~l~~~~~~~vR~~v~-------~--  189 (318)
                         .-.+.++|.+.++.+.+++.+|.-|...+..++..-++..   -..+.+.+-.++.|..|+||+.|.       +  
T Consensus       167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence               2235689999999999999999999888776655444432   234455666788999999997211       0  


Q ss_pred             ---c---------------------------------Cc--c-------chHHHHHHHHHh----------hc-------
Q psy14015        190 ---C---------------------------------GS--G-------VKAELRSHFRNL----------CQ-------  207 (318)
Q Consensus       190 ---~---------------------------------~~--~-------~~~~ll~~l~~l----------~~-------  207 (318)
                         +                                 ++  .       .-..++|.+++-          +.       
T Consensus       247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~  326 (885)
T KOG2023|consen  247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES  326 (885)
T ss_pred             HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence               0                                 00  0       112355555322          22       


Q ss_pred             -----------------------------CC----------CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015        208 -----------------------------DD----------TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE  248 (318)
Q Consensus       208 -----------------------------D~----------~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~  248 (318)
                                                   |+          +|+.|+..|.+|..++.++|.+. ...++|.++..+..+
T Consensus       327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~  405 (885)
T KOG2023|consen  327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSE  405 (885)
T ss_pred             CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcc
Confidence                                         11          39999999999999999999764 688999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhcccccccc
Q psy14015        249 QDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQIVDHK  291 (318)
Q Consensus       249 ~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D~~~~~  291 (318)
                      .|.||.+.+-++|.+++.+.+-  .....++|.++++|.|+-..|
T Consensus       406 ~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV  450 (885)
T KOG2023|consen  406 EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV  450 (885)
T ss_pred             hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence            9999999999999999877553  334569999999999944333

>KOG2171|consensus

Probab=99.45  E-value=7.4e-12  Score=125.36  Aligned_cols=285  Identities=18%  Similarity=0.187  Sum_probs=184.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC--------
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG--------   83 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~--------   83 (318)
                      ++.++...+|+++..|..+..-|..+...+|...  ....+++.+.+.+.|.+. ||.+++++++.++....        
T Consensus       120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~  199 (1075)
T KOG2171|consen  120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK  199 (1075)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH
Confidence            5677788889999999999999999887777542  234788888888888665 99999999888775441        


Q ss_pred             -------------------cccch----------------------hccchHHhhhcc--CchhHHHHHHHHHHHHHHhh
Q psy14015         84 -------------------GPEYV----------------------HCLLPPLESLAT--VEETVVRDKAVESLRLISAQ  120 (318)
Q Consensus        84 -------------------~~~~~----------------------~~llp~l~~l~~--d~~~~VR~~a~~~l~~l~~~  120 (318)
                                         ..+..                      ..++.+......  +-++.+|..|++.+..+++.
T Consensus       200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~  279 (1075)
T KOG2171|consen  200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY  279 (1075)
T ss_pred             HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence                               00000                      111111122222  22568888888888887776


Q ss_pred             CCh-----hHHhhhHHHHHHHhhcC----------------CCchhhhhhhhhhhhhccccCcc-hHHHHHHHHHhhccC
Q psy14015        121 HSP-----HDLEAHFVPLVQRLASG----------------DWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLCQD  178 (318)
Q Consensus       121 ~~~-----~~~~~~ilp~~~~l~~d----------------~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~l~~~  178 (318)
                      -+.     ..+...++|.+..+..+                +....-..|...+-.+.-+++.. +-.-+.+.+..++..
T Consensus       280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S  359 (1075)
T KOG2171|consen  280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS  359 (1075)
T ss_pred             hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC
Confidence            211     23555566666655321                00113334444444444444432 334444555555555


Q ss_pred             CCcccccc-hh---hcCc-------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHh
Q psy14015        179 DTPMQQGH-VW---ECGS-------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNL  244 (318)
Q Consensus       179 ~~~~vR~~-v~---~~~~-------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~l  244 (318)
                      ..+.-|.. +.   .+++       ..-.++++..+..++|+.++||.+|+.++|.++..+.++   ...+.+.|.+...
T Consensus       360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~  439 (1075)
T KOG2171|consen  360 TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL  439 (1075)
T ss_pred             CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence            55544432 11   1111       123678899999999999999999999999999988765   3455677788888


Q ss_pred             hcCCc-HHHHHHHHHHHHHHHhhCChhhhhHh---hHH-HHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        245 AQDEQ-DSVRLLAVEACVSIASLLSQSDVEQL---VMP-TLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       245 l~D~~-~~VR~aa~~~l~~l~~~l~~~~~~~~---l~p-~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +.|+. ..|...++.++.++++.+.++....+   ++. .+..++..          ..+.|+-.++.++
T Consensus       440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~----------~~~~v~e~vvtaI  499 (1075)
T KOG2171|consen  440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS----------SKPYVQEQAVTAI  499 (1075)
T ss_pred             hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHH
Confidence            88885 49999999999999999988776655   333 33345555          6788888877543

>KOG1240|consensus

Probab=99.41  E-value=3.6e-12  Score=127.40  Aligned_cols=241  Identities=17%  Similarity=0.168  Sum_probs=186.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHh---hChH---hHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCc----
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALA---LGQE---RTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNV----   82 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~---lg~~---~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~----   82 (318)
                      ++-++-.++|+...||..|+..|.++..-   +.+.   -+.++++|-|..++.| +.. ||.+-|..|+.||+..    
T Consensus       464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl  543 (1431)
T KOG1240|consen  464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL  543 (1431)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH
Confidence            44566778999999999999999999644   2222   2678999999999999 555 9999999999988621    


Q ss_pred             ---------C---c-----------c----cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHH
Q psy14015         83 ---------G---G-----------P----EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQ  135 (318)
Q Consensus        83 ---------~---~-----------~----~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~  135 (318)
                               |   .           +    ...+.+-.....|+.|+++.||.+-+++++.++-.++++.....+++.+.
T Consensus       544 e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLi  623 (1431)
T KOG1240|consen  544 ELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLI  623 (1431)
T ss_pred             HHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHH
Confidence                     1   0           0    01122334567889999999999999999999999999888888999999


Q ss_pred             HhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHH
Q psy14015        136 RLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRR  215 (318)
Q Consensus       136 ~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~  215 (318)
                      .+++|.+|+.|.+--+.+.-+...++|.                             -..++++|.+.+.++|..+.|=.
T Consensus       624 TfLNDkDw~LR~aFfdsI~gvsi~VG~r-----------------------------s~seyllPLl~Q~ltD~EE~Viv  674 (1431)
T KOG1240|consen  624 TFLNDKDWRLRGAFFDSIVGVSIFVGWR-----------------------------SVSEYLLPLLQQGLTDGEEAVIV  674 (1431)
T ss_pred             HHhcCccHHHHHHHHhhccceEEEEeee-----------------------------eHHHHHHHHHHHhccCcchhhHH
Confidence            9999999999977655544333333331                             14578999999999999999999


Q ss_pred             HHHHhhHHHHHH--hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc
Q psy14015        216 AAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV  285 (318)
Q Consensus       216 ~aa~~L~~l~~~--~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~  285 (318)
                      .|..+|.-+++.  +.. ...-+++..+.-++-.|+.+||++++..|..++..++..++.-.+.|.+.+.+.
T Consensus       675 ~aL~~ls~Lik~~ll~K-~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  675 SALGSLSILIKLGLLRK-PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             HHHHHHHHHHHhcccch-HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence            999999888863  222 233556777778889999999999999999999999988776566665554444

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.33  E-value=2.1e-11  Score=119.00  Aligned_cols=281  Identities=19%  Similarity=0.170  Sum_probs=188.3

Q ss_pred             CCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc
Q psy14015          6 SAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG   84 (318)
Q Consensus         6 ~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~   84 (318)
                      ..|+..+.-+..+.+.++++|+.+|-.|++.++.++   .++ ..+.+.|.+.+++.|+.+ ||+.|+..+.++.+.  .
T Consensus        72 ~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~-~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~--~  145 (526)
T PF01602_consen   72 EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPE-MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK--D  145 (526)
T ss_dssp             TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHH-HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--C
T ss_pred             cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccc-hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc--C
Confidence            344445666888899999999999999999999975   444 678899999999999988 999999999988764  2


Q ss_pred             ccchhc-cchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015         85 PEYVHC-LLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        85 ~~~~~~-llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~  160 (318)
                      ++..+. +.+.+..++.|++..|+..|+..+..+  ..+++   .....+...+.++..++++-.+..+..++..+...-
T Consensus       146 p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~  223 (526)
T PF01602_consen  146 PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME  223 (526)
T ss_dssp             HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred             HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence            334344 789999999999999999999999999  33333   233445556666667777667777777777654432


Q ss_pred             CcchH-HHHHHHHHhhccCCCcccccchh----hcCc--cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh
Q psy14015        161 TAGVK-AELRSHFRNLCQDDTPMQQGHVW----ECGS--GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL  233 (318)
Q Consensus       161 ~~~~~-~~l~~~~~~l~~~~~~~vR~~v~----~~~~--~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~  233 (318)
                      ..... ..+.+.+..+.+...+.|+-.+.    .+.+  ......++.+.++++++++++|..+..++..++... ++.+
T Consensus       224 ~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v  302 (526)
T PF01602_consen  224 PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV  302 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH
T ss_pred             hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh
Confidence            22211 23334444333333333332111    1111  234667888999999999999999999999988654 2222


Q ss_pred             HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCC-CCchhhHHhhhhh
Q psy14015        234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNE-FHPLELHVISATT  310 (318)
Q Consensus       234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~-~~~Vr~~~i~~~~  310 (318)
                      . .....+..+..|++..+|..++..+..++.    +.....+++.+...+.+          . ++++|..+++++.
T Consensus       303 ~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~----------~~d~~~~~~~i~~I~  365 (526)
T PF01602_consen  303 F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSE----------LSDPDFRRELIKAIG  365 (526)
T ss_dssp             G-THHHHHHHHHCSSSHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH----------C--HHHHHHHHHHHH
T ss_pred             h-hhhhhhheecCCCChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHh----------ccchhhhhhHHHHHH
Confidence            2 333344455557788888888777666662    33344577777777754          3 5567777766554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1243|consensus

Probab=99.23  E-value=5.4e-11  Score=114.20  Aligned_cols=245  Identities=17%  Similarity=0.183  Sum_probs=175.9

Q ss_pred             CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhcc
Q psy14015         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      +..+-.+++.++..+...|....+.|.+....+..+-....++|.+...+.-.+.. .....-|-.+++.+....+.+.+
T Consensus       253 fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~-~~~ltpl~k~~k~ld~~eyq~~i  331 (690)
T KOG1243|consen  253 FVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAA-SDFLTPLFKLGKDLDEEEYQVRI  331 (690)
T ss_pred             HHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccc-hhhhhHHHHhhhhccccccccch
Confidence            33456678889999999999999999998878888877889999998665443311 11112222344445556688889


Q ss_pred             chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (318)
Q Consensus        92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~  171 (318)
                      .|.+..|.+.++..||..-+..+..+..+++++.+...++|.+...+.|.+..+|..++..+..++..++...       
T Consensus       332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~-------  404 (690)
T KOG1243|consen  332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN-------  404 (690)
T ss_pred             hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh-------
Confidence            9999999999999999999999999999999999999999999999999999999999888888777777541       


Q ss_pred             HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015        172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS  251 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~  251 (318)
                                            ...+++..|..+-.|+...+|-+...++|+++..+.+......+...|.+.++||-.-
T Consensus       405 ----------------------Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~p  462 (690)
T KOG1243|consen  405 ----------------------LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVP  462 (690)
T ss_pred             ----------------------hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCC
Confidence                                  2344556666555566666666666666666655443332223444555566666666


Q ss_pred             HHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       252 VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      -|.+...++....+.+....+...|+|.+..+..|
T Consensus       463 aR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd  497 (690)
T KOG1243|consen  463 ARKAGVLALAATQEYFDQSEVANKILPSLVPLTVD  497 (690)
T ss_pred             chhhhhHHHhhcccccchhhhhhhccccccccccC
Confidence            66666666666666666666666666666666666

>KOG1242|consensus

Probab=99.23  E-value=1.1e-09  Score=104.09  Aligned_cols=254  Identities=16%  Similarity=0.178  Sum_probs=180.9

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH-hhchhhhhhhhcCChHH--HHHHHHHHHcccccCcCcccchhccch
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERT-RGELIPFLTETIYDEDE--VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~-~~~llp~l~~l~~D~~~--VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      .+.+.+.......|..++..+...-.-.|-+.. ...++..+.+...|.+.  .|..+.-.+......+|. .+..+++|
T Consensus       138 ~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-~~EPyiv~  216 (569)
T KOG1242|consen  138 LLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-PFEPYIVP  216 (569)
T ss_pred             HHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-CCCchHHh
Confidence            444555566666777777777666544443332 33566677777788655  555555555555566663 44556665


Q ss_pred             HHhhh---ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015         94 PLESL---ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS  170 (318)
Q Consensus        94 ~l~~l---~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~  170 (318)
                      ++-.+   ..|....||.+|..+...+...++...+...+.+.+..+..+ .|+...++++++|.+....+...-     
T Consensus       217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs-----  290 (569)
T KOG1242|consen  217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLS-----  290 (569)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHH-----
Confidence            55444   568899999999999999999999887777666666667666 899999999999855433222111     


Q ss_pred             HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--------------------
Q psy14015        171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--------------------  230 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--------------------  230 (318)
                                            ..-.+++|.+.+-+.|..++||+++..++-+++.++..                    
T Consensus       291 ----------------------~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~  348 (569)
T KOG1242|consen  291 ----------------------LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY  348 (569)
T ss_pred             ----------------------HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc
Confidence                                  12367788888888899999999988888888875521                    


Q ss_pred             ------------------hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC-Chhh---hhHhhHHHHHHhccccc
Q psy14015        231 ------------------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL-SQSD---VEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       231 ------------------~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l-~~~~---~~~~l~p~l~~ll~D~~  288 (318)
                                        ......++|.+.+.+.+.+...++.++..+++++..+ .+..   +...|+|.+...+.|  
T Consensus       349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d--  426 (569)
T KOG1242|consen  349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD--  426 (569)
T ss_pred             hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC--
Confidence                              1224568888888888888888888999999999888 3332   345688999999999  


Q ss_pred             cccccCCCCCCchhhHHhhhh
Q psy14015        289 DHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       289 ~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                              ..|+||--..++.
T Consensus       427 --------~~PEvR~vaarAL  439 (569)
T KOG1242|consen  427 --------AVPEVRAVAARAL  439 (569)
T ss_pred             --------CChhHHHHHHHHH
Confidence                    8999998887765

>KOG2023|consensus

Probab=99.19  E-value=4.9e-10  Score=106.65  Aligned_cols=236  Identities=19%  Similarity=0.223  Sum_probs=162.2

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc----cc
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERT---RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP----EY   87 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~----~~   87 (318)
                      +.+...-+|+++.+|...++.|.-+... -++..   ...++.|+....+|.+| |-..|++-+..+++.--..    .+
T Consensus       218 e~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~  296 (885)
T KOG2023|consen  218 EILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY  296 (885)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence            3344445799999999999999988644 22222   23567777788889777 9999998888777531100    01


Q ss_pred             hhccchHHhh----------hcc------------------------------------Cc----------hhHHHHHHH
Q psy14015         88 VHCLLPPLES----------LAT------------------------------------VE----------ETVVRDKAV  111 (318)
Q Consensus        88 ~~~llp~l~~----------l~~------------------------------------d~----------~~~VR~~a~  111 (318)
                      ...++|++.+          |++                                    |+          +++.|.-++
T Consensus       297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA  376 (885)
T KOG2023|consen  297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA  376 (885)
T ss_pred             HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence            1223333211          111                                    01          157888888


Q ss_pred             HHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcC
Q psy14015        112 ESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG  191 (318)
Q Consensus       112 ~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~  191 (318)
                      .++..+++.++.+ +..+++|++++.+..+.|.+|.+++-.+|.+..+.-+-.-                          
T Consensus       377 AaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~--------------------------  429 (885)
T KOG2023|consen  377 AALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV--------------------------  429 (885)
T ss_pred             HHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc--------------------------
Confidence            8898898888764 5667999999988889999999999999877544322111                          


Q ss_pred             ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh---hcCCcHHHHHHHHHHHHHHHhhCC
Q psy14015        192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL---AQDEQDSVRLLAVEACVSIASLLS  268 (318)
Q Consensus       192 ~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l---l~D~~~~VR~aa~~~l~~l~~~l~  268 (318)
                       ..-.+++|.+++++.|..+.||...+..|+.++..+-.+...+.+.|.+..+   +-|.+..|+.+++.++.-+-+--|
T Consensus       430 -p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  430 -PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             -cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence             1225789999999999999999999999999998765443334455655554   459999999999998877764433


Q ss_pred             hhhhhHhhHHHHHHhcc
Q psy14015        269 QSDVEQLVMPTLRQCSV  285 (318)
Q Consensus       269 ~~~~~~~l~p~l~~ll~  285 (318)
                           +.++|.+...|+
T Consensus       509 -----~eLVp~l~~IL~  520 (885)
T KOG2023|consen  509 -----EELVPYLEYILD  520 (885)
T ss_pred             -----chhHHHHHHHHH
Confidence                 334554444443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.14  E-value=2.2e-09  Score=98.93  Aligned_cols=184  Identities=29%  Similarity=0.372  Sum_probs=124.6

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      -+..+.+.+.++++.+|..++..++.+.    .    .+.+|.+..++.|.++ ||..++..|+.+.    .+.    -+
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~----~----~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----~~~----a~  107 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELG----S----EEAVPLLRELLSDEDPRVRDAAADALGELG----DPE----AV  107 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhc----h----HHHHHHHHHHhcCCCHHHHHHHHHHHHccC----Chh----HH
Confidence            4667778888888999999998877752    2    3467888888888777 9999999888663    222    33


Q ss_pred             hHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCC------------chhhhhhhhhhhhhccc
Q psy14015         93 PPLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDW------------FTSRTSACGLFSVCYPR  159 (318)
Q Consensus        93 p~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~------------~~vR~~a~~~l~~~~~~  159 (318)
                      |.+..++. |++..||..|..+|..+...-       .+.|++ .+++|+.            +.+|..++..++.+   
T Consensus       108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---  176 (335)
T COG1413         108 PPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGEL---  176 (335)
T ss_pred             HHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHHc---
Confidence            34444333 889999999999988886542       133333 3334433            23455554444422   


Q ss_pred             cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHH
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP  239 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp  239 (318)
                                                        ......+.+..++.|+...||..++.+++.++...      ..+.+
T Consensus       177 ----------------------------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~  216 (335)
T COG1413         177 ----------------------------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAAD  216 (335)
T ss_pred             ----------------------------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHH
Confidence                                              22445677778888888888888888888777521      24667


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .|...+.|+++.||..++.+++...
T Consensus       217 ~l~~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         217 LLVKALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             HHHHHhcCCCHHHHHHHHHHhcccC
Confidence            7888888888888888877766544

>KOG1242|consensus

Probab=99.10  E-value=7.9e-09  Score=98.27  Aligned_cols=239  Identities=15%  Similarity=0.181  Sum_probs=175.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhcc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCL   91 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~l   91 (318)
                      ++.++....|....+|..+......+...+.+... +.++|-+..-+.+..| -..++++.++-++..-..  ..+.+.+
T Consensus       218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~i  296 (569)
T KOG1242|consen  218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDL  296 (569)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence            56777888889999999999999999888887744 4455555444444488 778888888866542211  3456779


Q ss_pred             chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhh-hhccccCcchHHHHHH
Q psy14015         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS-VCYPRVTAGVKAELRS  170 (318)
Q Consensus        92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~-~~~~~~~~~~~~~l~~  170 (318)
                      +|.+.+-+.|..+.||.++.+++..++......++.. ++|.+..-..|+.-.+..+.-.+.. .++..+..        
T Consensus       297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~-~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~--------  367 (569)
T KOG1242|consen  297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK-IIPTLLDALADPSCYTPECLDSLGATTFVAEVDA--------  367 (569)
T ss_pred             hHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHhcCcccchHHHHHhhcceeeeeeecc--------
Confidence            9999999999999999999999999999887665444 7777777778886443333222111 12222211        


Q ss_pred             HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-hhh---hHhhHHHHHHHhhc
Q psy14015        171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE-VDY---LKTDIIPMFVNLAQ  246 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-~~~---~~~~llp~l~~ll~  246 (318)
                                            ....-++|.+.+-+.+.+...++.++..++.++.-.. +.+   +...++|-++..+.
T Consensus       368 ----------------------psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~  425 (569)
T KOG1242|consen  368 ----------------------PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD  425 (569)
T ss_pred             ----------------------hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc
Confidence                                  1335578888888888888888888888888887763 332   35678888888889


Q ss_pred             CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      |+.++||..++.+++.+.+-.|...+ ..++|.+...+++
T Consensus       426 d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  426 DAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTS  464 (569)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhcc
Confidence            99999999999999888888887766 7788888888876

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.07  E-value=4e-09  Score=91.86  Aligned_cols=193  Identities=17%  Similarity=0.186  Sum_probs=128.7

Q ss_pred             CCchHHHHH-HHhcCccHHHHHHHHHhHHHHHHhhC----hHhHhh---chhhhhhhhcCChHH-HHHHHHHHHcccccC
Q psy14015         11 SLYPIAVLI-DELKNEDVQLRLNSIKKLSTIALALG----QERTRG---ELIPFLTETIYDEDE-VLLALAEQLGTFTPN   81 (318)
Q Consensus        11 ~l~~i~~l~-~~l~~~~~~~R~~~~~~L~~ia~~lg----~~~~~~---~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~   81 (318)
                      .+.++...+ +...+.+|..|.+++..|..+...-.    +..+..   .+++.+...+.|... |-+.++..+..++..
T Consensus         4 ~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~   83 (228)
T PF12348_consen    4 EFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ   83 (228)
T ss_dssp             --GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            344433333 33468899999999999999976531    121222   333566667777666 889999999999887


Q ss_pred             cCccc--chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC-hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         82 VGGPE--YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS-PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        82 ~~~~~--~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                      +|...  +...++|.+...+.|....||..|..++..+++..+ ..   ..+.+.+....+++++.+|..++..+..++.
T Consensus        84 l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~  160 (228)
T PF12348_consen   84 LGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILE  160 (228)
T ss_dssp             HGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred             HhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            77642  346688999999999999999999999999999887 22   2237777888899999999999998887766


Q ss_pred             ccCc---chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh
Q psy14015        159 RVTA---GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD  231 (318)
Q Consensus       159 ~~~~---~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~  231 (318)
                      ..+.   .....                         ...+.+.+.+.+.++|.+++||.++-.++..+...+|..
T Consensus       161 ~~~~~~~~l~~~-------------------------~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  161 KWGSDSSVLQKS-------------------------AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             T-----GGG--H-------------------------HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HccchHhhhccc-------------------------chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            5551   11100                         122678899999999999999999999999999888753

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2259|consensus

Probab=99.06  E-value=1.5e-09  Score=103.21  Aligned_cols=236  Identities=17%  Similarity=0.141  Sum_probs=164.9

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh------
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP------  123 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~------  123 (318)
                      +.+..-+..+..|.+. ||..|++.|-.+.+   +-...+.++.....+++|+++.||.+|+..+...++..+.      
T Consensus       197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e---g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE---GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc---cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            3444446678888777 99999999888866   2234456778888899999999999999999999988722      


Q ss_pred             --hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-hHHHHHHHHHh-hccCCCcccccc-hh-----hcCcc
Q psy14015        124 --HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRN-LCQDDTPMQQGH-VW-----ECGSG  193 (318)
Q Consensus       124 --~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~-l~~~~~~~vR~~-v~-----~~~~~  193 (318)
                        ..........+++...|-+|.||.-|++.||.+-. ++++ ..+++...... +-+..+..-|.| ..     ..|+.
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence              23444577788899999999999999999996532 2322 22333222211 111111111111 00     01110


Q ss_pred             ------------chHHHH-----HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHH
Q psy14015        194 ------------VKAELR-----SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA  256 (318)
Q Consensus       194 ------------~~~~ll-----~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa  256 (318)
                                  ....++     ..|..-+.|+-.+||++|..+++.++..  ...+...-+.++..+++|+...||..+
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA~~aldfLvDMfNDE~~~VRL~a  430 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFAVRALDFLVDMFNDEIEVVRLKA  430 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence                        111233     5677888999999999999999999873  233456788899999999999999999


Q ss_pred             HHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHH
Q psy14015        257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHV  305 (318)
Q Consensus       257 ~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~  305 (318)
                      ..++..++..+.   ..+..++.++..|.|          ..++||.++
T Consensus       431 i~aL~~Is~~l~---i~eeql~~il~~L~D----------~s~dvRe~l  466 (823)
T KOG2259|consen  431 IFALTMISVHLA---IREEQLRQILESLED----------RSVDVREAL  466 (823)
T ss_pred             HHHHHHHHHHhe---ecHHHHHHHHHHHHh----------cCHHHHHHH
Confidence            999999997642   234568899999999          777777654

>PTZ00429 beta-adaptin; Provisional

Probab=99.03  E-value=2.3e-08  Score=100.06  Aligned_cols=113  Identities=16%  Similarity=0.154  Sum_probs=91.8

Q ss_pred             CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015          5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG   83 (318)
Q Consensus         5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~   83 (318)
                      +..||..+.-+..+.+.++|+|+.+|-.+++.++.+.    .....+.+++.+.+.+.|.++ ||++|+-.+.++-..-.
T Consensus        97 ~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p  172 (746)
T PTZ00429         97 RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM  172 (746)
T ss_pred             ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence            4578888899999999999999999999999998863    233677888999999999888 99999999888754222


Q ss_pred             cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhC
Q psy14015         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH  121 (318)
Q Consensus        84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~  121 (318)
                      .-.....+.+.+..++.|.+..|...|+.+|..+.+..
T Consensus       173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence            11112346788989999999999999999999997654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.02  E-value=2.5e-08  Score=107.43  Aligned_cols=254  Identities=14%  Similarity=0.105  Sum_probs=187.2

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH--h-H-hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE--R-T-RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV   88 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~--~-~-~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~   88 (318)
                      -|+.+.+.|++.+..+|..++..|+.++.. +++  . . ....+|.|.+++++.+. ++..++..|..+... +.+.  
T Consensus       489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~--  564 (2102)
T PLN03200        489 GIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAA--  564 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchh--
Confidence            367888889899999999999999998753 211  1 1 23567888888877666 999999999988652 2221  


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh------hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE------AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~------~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                        .++.+..++..+++.++..++..+..+.+....++..      +..+|.+.+|+++++..++..|+..+..++..-.+
T Consensus       565 --~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        565 --TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             --HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence              3345556666677888888888888887765543312      24788889999988889999998888776543221


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDII  238 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~ll  238 (318)
                       ....                         ......+|++..++++.+.++|+.++.+|+.+......+.    +....+
T Consensus       643 -~~~a-------------------------vv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV  696 (2102)
T PLN03200        643 -LCES-------------------------LATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI  696 (2102)
T ss_pred             -HHHH-------------------------HHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence             1111                         1235568999999999999999999999999996433332    234588


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      |.+..++++++..++..++.++..++..-...  ......+|.+..++.+          -.+++|-+++...
T Consensus       697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~----------G~~~~k~~Aa~AL  759 (2102)
T PLN03200        697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE----------GTLEGKRNAARAL  759 (2102)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh----------CChHHHHHHHHHH
Confidence            99999999999999999999999999754222  2334578999999999          8888888887654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.02  E-value=6.5e-09  Score=95.83  Aligned_cols=179  Identities=26%  Similarity=0.242  Sum_probs=134.7

Q ss_pred             chhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhH
Q psy14015         52 ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF  130 (318)
Q Consensus        52 ~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i  130 (318)
                      ...+.+.+++.|.++ +|..++..++.+.        ....+|.+..++.|.+..||..|+.+++.+...   +     .
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~-----a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP---E-----A  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---h-----H
Confidence            356777788888766 9999999988663        244788999999999999999999976666532   1     3


Q ss_pred             HHHHHHhh-cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015        131 VPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-  208 (318)
Q Consensus       131 lp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-  208 (318)
                      +|.+.+++ +|+++.+|..++..|+++-.                                     +..+..++..++| 
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------------------------------~~a~~~l~~~l~~~  149 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGD-------------------------------------ERALDPLLEALQDE  149 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------------------------------hhhhHHHHHHhccc
Confidence            33344433 48999999999998885522                                     1123334444444 


Q ss_pred             -----------CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhH
Q psy14015        209 -----------DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM  277 (318)
Q Consensus       209 -----------~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~  277 (318)
                                 ..+.+|..++..++.+..        ....+.+..++.|+...||.+++.+++.+....      ..+.
T Consensus       150 ~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~  215 (335)
T COG1413         150 DSGSAAAALDAALLDVRAAAAEALGELGD--------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAA  215 (335)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHH
Confidence                       335899999999998875        457788999999999999999999999888532      4677


Q ss_pred             HHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        278 PTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       278 p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      +.+...+.|          +.++||...+.
T Consensus       216 ~~l~~~~~~----------~~~~vr~~~~~  235 (335)
T COG1413         216 DLLVKALSD----------ESLEVRKAALL  235 (335)
T ss_pred             HHHHHHhcC----------CCHHHHHHHHH
Confidence            889999999          77777777764

>TIGR02270 conserved hypothetical protein

Probab=99.00  E-value=2.1e-08  Score=94.11  Aligned_cols=204  Identities=17%  Similarity=0.128  Sum_probs=135.5

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      +..+++.|.+.+..+|..+++.|+++    +..    ...+.+..+++++++ ||.++...++....     +    -.+
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----~~~----~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----~----~~~  150 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWL----GGR----QAEPWLEPLLAASEPPGRAIGLAALGAHRH-----D----PGP  150 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcC----Cch----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----C----hHH
Confidence            67778888888888888888888875    333    244556666677666 88887777765321     1    234


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                      .+..+++|++..||..|+.+++.+...        ..+|.+.....|.+..||..|+..++.+-..       .....+.
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------~A~~~l~  215 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------LAWGVCR  215 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------hHHHHHH
Confidence            566667788888999988888887643        2555566778888888998888777644211       0111111


Q ss_pred             hhccCCCcccccc---hhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015        174 NLCQDDTPMQQGH---VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       174 ~l~~~~~~~vR~~---v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~  250 (318)
                      .+....++-++..   ....+  -....++.+..+++|+.  ||..++.++|.++.        ...+|.+...+.|+. 
T Consensus       216 ~~~~~~g~~~~~~l~~~lal~--~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~-  282 (410)
T TIGR02270       216 RFQVLEGGPHRQRLLVLLAVA--GGPDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP-  282 (410)
T ss_pred             HHHhccCccHHHHHHHHHHhC--CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH-
Confidence            2111222111110   11111  12467888999999876  99999999998865        458888889998887 


Q ss_pred             HHHHHHHHHHHHHH
Q psy14015        251 SVRLLAVEACVSIA  264 (318)
Q Consensus       251 ~VR~aa~~~l~~l~  264 (318)
                       +|+.+.+++..+.
T Consensus       283 -~aR~A~eA~~~It  295 (410)
T TIGR02270       283 -WARLAGEAFSLIT  295 (410)
T ss_pred             -HHHHHHHHHHHhh
Confidence             8898888887776

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0166|consensus

Probab=98.98  E-value=4.6e-08  Score=92.54  Aligned_cols=242  Identities=17%  Similarity=0.182  Sum_probs=178.5

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChH--HHHHHHHHHHcccccCcCc--c-
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGG--P-   85 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~--~VR~~aa~~L~~l~~~~~~--~-   85 (318)
                      ++.++..+.+++..+|..++..|+.|+-. |+.    -.....++-|..++..+.  ...+.++..|..+++.-.+  + 
T Consensus       154 vp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~  232 (514)
T KOG0166|consen  154 VPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF  232 (514)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence            66789999999999999999999999743 221    112223344444444433  3888999999999874321  1 


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      +....++|.+..++.++|..|..-|.-++.++....++.   .+..-++|.+..++..++..++.-|...+|.+..+-..
T Consensus       233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~  312 (514)
T KOG0166|consen  233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE  312 (514)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence            345679999999999999999999999999998776552   12234889999999988888888888888876554322


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchh-----hhHhh
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD-----YLKTD  236 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~-----~~~~~  236 (318)
                      . .+.+                         ....++|.|..++. .+...+|+.|+..++.|+.  |..     .+...
T Consensus       313 Q-Tq~v-------------------------i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~  364 (514)
T KOG0166|consen  313 Q-TQVV-------------------------INSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN  364 (514)
T ss_pred             H-HHHH-------------------------HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc
Confidence            1 1111                         22456899999988 6778899999999999986  432     12345


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhcc
Q psy14015        237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSV  285 (318)
Q Consensus       237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~  285 (318)
                      ++|.+.++++..+...|+.|+.+|.+++..-.++..    ..-+++.++.+|.
T Consensus       365 l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~  417 (514)
T KOG0166|consen  365 LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT  417 (514)
T ss_pred             cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence            999999999999999999999999998866555432    2347788888884

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.98  E-value=9.7e-08  Score=93.24  Aligned_cols=273  Identities=14%  Similarity=0.118  Sum_probs=190.4

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      +..+...+++.++.++.++++.+..+..   .......+++.+.+++.+.++ +|..+...|..++..-  +........
T Consensus       233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~~~~  307 (526)
T PF01602_consen  233 IEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFNQSL  307 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGTHHH
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhhhhh
Confidence            5556667778888888888888886532   222456778888888887777 9999999999887632  112222333


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-CCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                      .+..+..|++..||..+++.+..+++.-+-+    .+++.+.+.+.+ ++..+|..++..++.++...+. ...+..+.+
T Consensus       308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~~~~v~~l  382 (526)
T PF01602_consen  308 ILFFLLYDDDPSIRKKALDLLYKLANESNVK----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DAEWYVDTL  382 (526)
T ss_dssp             HHHHHHCSSSHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SHHHHHHHH
T ss_pred             hhheecCCCChhHHHHHHHHHhhcccccchh----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hHHHHHHHH
Confidence            3444555888999999999988888643332    255556555533 3566888888888877665533 234444555


Q ss_pred             HhhccCCCcccccchh-------hcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhch-hhhHhhHHHHHHH
Q psy14015        173 RNLCQDDTPMQQGHVW-------ECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVN  243 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~-------~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~-~~~~~~llp~l~~  243 (318)
                      .++....++.+...++       .-.+...+..+..+.+++.+ .++.++..+++.+|+.+...+. + ...+++..+..
T Consensus       383 ~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~  461 (526)
T PF01602_consen  383 LKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIE  461 (526)
T ss_dssp             HHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHH
T ss_pred             HHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHH
Confidence            5655554444433211       11234556778888888776 6689999999999999998765 3 45678888888


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc--ccccccccCCCCCCchhhHHhhh
Q psy14015        244 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV--QIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       244 ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~--D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ...+.+..||..+..++..+....+.....+.+.+.+.++.+  +          .+++||..+..-
T Consensus       462 ~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s----------~~~evr~Ra~~y  518 (526)
T PF01602_consen  462 NFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDS----------SDPEVRDRAREY  518 (526)
T ss_dssp             HHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-----------SSHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCC----------CCHHHHHHHHHH
Confidence            888899999999999999999888776666789999999999  8          899999887743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>TIGR02270 conserved hypothetical protein

Probab=98.97  E-value=3.7e-08  Score=92.50  Aligned_cols=200  Identities=17%  Similarity=0.058  Sum_probs=122.8

Q ss_pred             HHHHHHHh-cCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015         15 IAVLIDEL-KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        15 i~~l~~~l-~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      ++.++..+ .++++.+|..++..+....   +     ...+..+.+.+.|.++ ||.+++++|+.+.    .    ....
T Consensus        56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~---~-----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----~----~~a~  119 (410)
T TIGR02270        56 TELLVSALAEADEPGRVACAALALLAQE---D-----ALDLRSVLAVLQAGPEGLCAGIQAALGWLG----G----RQAE  119 (410)
T ss_pred             HHHHHHHHhhCCChhHHHHHHHHHhccC---C-----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----c----hHHH
Confidence            44555666 3555666555444443210   1     1125666677777666 8888888888653    2    2244


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                      +.+..+++++++.||..++.++......         -.+.+..+++|+++.+|..|+..+|++-.              
T Consensus       120 ~~L~~~L~~~~p~vR~aal~al~~r~~~---------~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------------  176 (410)
T TIGR02270       120 PWLEPLLAASEPPGRAIGLAALGAHRHD---------PGPALEAALTHEDALVRAAALRALGELPR--------------  176 (410)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhccC---------hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------
Confidence            5666667778888888877666552211         23345556678888888888888775421              


Q ss_pred             HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH---------h---chhh-------h
Q psy14015        173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV---------V---EVDY-------L  233 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~---------~---~~~~-------~  233 (318)
                                             ....|.+...+.|+++.||..++.+++.++..         .   |...       .
T Consensus       177 -----------------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~l  233 (410)
T TIGR02270       177 -----------------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLL  233 (410)
T ss_pred             -----------------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHH
Confidence                                   23355566667777777777777777665320         0   1000       0


Q ss_pred             ----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        234 ----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       234 ----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                          ....++.+..+++|+.  ||..++.+++.+..        ...+|.++.+++|
T Consensus       234 al~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d  280 (410)
T TIGR02270       234 AVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMRE  280 (410)
T ss_pred             HhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcC
Confidence                1256677777888876  88888888776662        3467788888887

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1243|consensus

Probab=98.94  E-value=4.2e-09  Score=101.41  Aligned_cols=195  Identities=18%  Similarity=0.243  Sum_probs=170.6

Q ss_pred             HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH
Q psy14015         47 ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD  125 (318)
Q Consensus        47 ~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~  125 (318)
                      +.+...++|.+.++..-.+. +|.-+..++.+++..+.++.....|+|.+..-+.|.++.+|+..+.++..++..+++..
T Consensus       325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~  404 (690)
T KOG1243|consen  325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN  404 (690)
T ss_pred             cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence            34677899999999887666 99999999999999998888889999999999999999999999999999999999987


Q ss_pred             HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh
Q psy14015        126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL  205 (318)
Q Consensus       126 ~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l  205 (318)
                      ....++-++.++..|+...+|....-++|++...+...+|+                             .-+.-.|...
T Consensus       405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~-----------------------------~vL~~aftra  455 (690)
T KOG1243|consen  405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK-----------------------------RVLASAFTRA  455 (690)
T ss_pred             hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc-----------------------------cccchhhhhh
Confidence            77778989999989888999999988889887766543322                             2245667778


Q ss_pred             hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        206 CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       206 ~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      +.|+...-|++....+....+.+..+.+...|+|.+.-+..|++..||..+..++.++...+.+.
T Consensus       456 lkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  456 LKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             hcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999988888999999999999999999999999999988766554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.92  E-value=2.6e-08  Score=86.67  Aligned_cols=189  Identities=14%  Similarity=0.129  Sum_probs=125.4

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhc-------cchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHC-------LLPPLESLATVEETVVRDKAVESLRLISAQHS  122 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~-------llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  122 (318)
                      +++.+.+..--.+.+| .|..+...|..++..-......+.       +++.+...+.|....|-..|...+..++..++
T Consensus         6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~   85 (228)
T PF12348_consen    6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG   85 (228)
T ss_dssp             GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4556666554566788 999999999988753211122222       33444555677777888888999999998887


Q ss_pred             hh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHH-H
Q psy14015        123 PH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAEL-R  199 (318)
Q Consensus       123 ~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~l-l  199 (318)
                      ..  ...+.++|.+.+.+.|....+|..|...+..++...+                                ....+ .
T Consensus        86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--------------------------------~~~~~~~  133 (228)
T PF12348_consen   86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--------------------------------YSPKILL  133 (228)
T ss_dssp             GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---------------------------------H--HHHH
T ss_pred             HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--------------------------------cHHHHHH
Confidence            63  3556789999999999877788888766655543322                                01233 7


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--hh-----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VD-----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  271 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~~-----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~  271 (318)
                      +.+...+++.++.+|..++..+..+....+  ..     .....+.+.+..+++|+++.||.++-.++..+.+.+|...
T Consensus       134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            888889999999999999999999998887  11     1236799999999999999999999999999999888764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1824|consensus

Probab=98.90  E-value=2.1e-07  Score=91.99  Aligned_cols=266  Identities=15%  Similarity=0.205  Sum_probs=150.3

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH--------------------------------------------
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT--------------------------------------------   49 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~--------------------------------------------   49 (318)
                      -+.-++..|.|.++.+...|++=|+-+.+.++.+..                                            
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t  127 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT  127 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence            366778999999999999999999987766655421                                            


Q ss_pred             -hhchhhhhhhhc---CChHHHHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh
Q psy14015         50 -RGELIPFLTETI---YDEDEVLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP  123 (318)
Q Consensus        50 -~~~llp~l~~l~---~D~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~  123 (318)
                       .+.+.|.+.+..   .|.+.++..+...++.+...+|.  +++-..++..+..-+..+-.-||.+|+.++..++...+.
T Consensus       128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~  207 (1233)
T KOG1824|consen  128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR  207 (1233)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH
Confidence             111222222111   11111444444444333333332  112222333333333444556666666666666666655


Q ss_pred             hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHH
Q psy14015        124 HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFR  203 (318)
Q Consensus       124 ~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~  203 (318)
                      +.+...+--.++.|.+..+...-..-+..++                   .+|+..+..       . ....+.++|.+.
T Consensus       208 ~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~-------------------~i~r~ag~r-------~-~~h~~~ivp~v~  260 (1233)
T KOG1824|consen  208 DLYVELIEHLLKGLSNRTQMSATRTYIQCLA-------------------AICRQAGHR-------F-GSHLDKIVPLVA  260 (1233)
T ss_pred             HHHHHHHHHHHhccCCCCchHHHHHHHHHHH-------------------HHHHHhcch-------h-hcccchhhHHHH
Confidence            5544433333444444432211112222222                   222222211       0 013467889999


Q ss_pred             Hhh---cCCCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhh---------------------------------
Q psy14015        204 NLC---QDDTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLA---------------------------------  245 (318)
Q Consensus       204 ~l~---~D~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll---------------------------------  245 (318)
                      +++   +.+..+.|+.+.++|+.|......+.  .+.+++......+                                 
T Consensus       261 ~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsD  340 (1233)
T KOG1824|consen  261 DYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSD  340 (1233)
T ss_pred             HHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcccccc
Confidence            999   66779999999999999997654431  1223333222221                                 


Q ss_pred             -cCCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhhcc
Q psy14015        246 -QDEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHV  317 (318)
Q Consensus       246 -~D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~~~  317 (318)
                       .|-+|.||+++++++..+...-..  ..+.+.+-|.++.-.++          -+.+|+.-++.. -..+++|+
T Consensus       341 DeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkE----------REEnVk~dvf~~-yi~ll~qt  404 (1233)
T KOG1824|consen  341 DEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKE----------REENVKADVFHA-YIALLKQT  404 (1233)
T ss_pred             ccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHH----------HhhhHHHHHHHH-HHHHHHcC
Confidence             245899999999998887643322  24667789999999999          888999888853 34556654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.90  E-value=1.3e-07  Score=102.01  Aligned_cols=242  Identities=16%  Similarity=0.104  Sum_probs=175.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC-ChHHHHHHHHHHHcccccCcCcccc------
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY-DEDEVLLALAEQLGTFTPNVGGPEY------   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~-D~~~VR~~aa~~L~~l~~~~~~~~~------   87 (318)
                      |+.+++.|++.++..+..++..|..+... |...    .++.+..++. |+..++..+.+.++.+.......+.      
T Consensus       532 IppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~  606 (2102)
T PLN03200        532 VPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA  606 (2102)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence            56778889988999999999999998653 3222    2244445544 4444767778888887654433221      


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      ...-+|.+..|+...++.+++.|..++..++..-.+   .-+..-.+|.+..++.+....+|..++..++.+........
T Consensus       607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q  686 (2102)
T PLN03200        607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENR  686 (2102)
T ss_pred             ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHH
Confidence            234789999999999999999999999999874332   12333467777778888888899999998887764322221


Q ss_pred             HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHH
Q psy14015        165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFV  242 (318)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~  242 (318)
                      +..+                         .....+|++.+++++++..++..++.+|..++..-+.  +......+|.+.
T Consensus       687 ~~~~-------------------------v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv  741 (2102)
T PLN03200        687 KVSY-------------------------AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLT  741 (2102)
T ss_pred             HHHH-------------------------HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHH
Confidence            1121                         2345689999999999999999999999999874321  122356789999


Q ss_pred             HhhcCCcHHHHHHHHHHHHHHHhhCChhh------hhHhhHHHHHHhccc
Q psy14015        243 NLAQDEQDSVRLLAVEACVSIASLLSQSD------VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       243 ~ll~D~~~~VR~aa~~~l~~l~~~l~~~~------~~~~l~p~l~~ll~D  286 (318)
                      +++++.+..+|+.|+.++.+++..++.++      ...-.+..+..+|+-
T Consensus       742 ~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~  791 (2102)
T PLN03200        742 RVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS  791 (2102)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence            99999999999999999999999887655      223467778888886

>KOG1241|consensus

Probab=98.89  E-value=3.2e-08  Score=95.82  Aligned_cols=269  Identities=15%  Similarity=0.073  Sum_probs=183.0

Q ss_pred             HHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-H-HHHHHHHHHcccccCcCcccch---hc-c
Q psy14015         18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGPEYV---HC-L   91 (318)
Q Consensus        18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~-VR~~aa~~L~~l~~~~~~~~~~---~~-l   91 (318)
                      .+..|.+..+..+..+.+-++.||..-=|...++++++.+..-..+++ . ++.+..+.+|.+++.+..+...   +. +
T Consensus        95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL  174 (859)
T KOG1241|consen   95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL  174 (859)
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence            446778888888889999999998764445578899999988776655 4 9999999999999866543211   22 3


Q ss_pred             chHHhhhcc-CchhHHHHHHHHHHHHHHhh----CChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc----cCc
Q psy14015         92 LPPLESLAT-VEETVVRDKAVESLRLISAQ----HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR----VTA  162 (318)
Q Consensus        92 lp~l~~l~~-d~~~~VR~~a~~~l~~l~~~----~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~----~~~  162 (318)
                      .-++....+ .++..||-+|..+|..=.+.    +..+.-.++|+..+++.-+.++.++|..|-..|.++..-    ...
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~  254 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP  254 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555544 44789999999998875544    333444556777778877888888888887777665421    111


Q ss_pred             chHHHH-HHHHHhhccCCCcccccc-------hh--------hcCc---------------cchHHHHHHHHHhhc----
Q psy14015        163 GVKAEL-RSHFRNLCQDDTPMQQGH-------VW--------ECGS---------------GVKAELRSHFRNLCQ----  207 (318)
Q Consensus       163 ~~~~~l-~~~~~~l~~~~~~~vR~~-------v~--------~~~~---------------~~~~~ll~~l~~l~~----  207 (318)
                      .....+ +-++..+-++ .++|--+       +.        +.++               ..-+.++|.+++++.    
T Consensus       255 yM~~alfaitl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde  333 (859)
T KOG1241|consen  255 YMEQALFAITLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE  333 (859)
T ss_pred             HHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence            111111 1111112111 1111110       00        0010               122478899888763    


Q ss_pred             ---CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh---hHhhHHHHH
Q psy14015        208 ---DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTLR  281 (318)
Q Consensus       208 ---D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l~  281 (318)
                         |++|..-++|..||.-+++..|.+. ...++|+++.-.+.|+|.-|.+++-+++.+...-.+..-   ....+|.++
T Consensus       334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii  412 (859)
T KOG1241|consen  334 DDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII  412 (859)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence               3569999999999999999998765 479999999999999999999999999988876555432   244889999


Q ss_pred             Hhccccc
Q psy14015        282 QCSVQIV  288 (318)
Q Consensus       282 ~ll~D~~  288 (318)
                      .+..|++
T Consensus       413 ~lm~D~s  419 (859)
T KOG1241|consen  413 NLMSDPS  419 (859)
T ss_pred             HHhcCch
Confidence            9999955

>PTZ00429 beta-adaptin; Provisional

Probab=98.84  E-value=6e-07  Score=90.09  Aligned_cols=275  Identities=14%  Similarity=0.065  Sum_probs=166.0

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccchhccc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      .+..+.+.|++.+...|..+++++-... ..|.+  ...+.|-+.+++..++ ++|+-+.-.+..+++.  .++..-..+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~m-t~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI  107 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANM-TMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV  107 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence            4778888999999888888888876543 35754  3557777777776544 4999988888887652  122223345


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch-HHHHHHH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV-KAELRSH  171 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~l~~~  171 (318)
                      ..+..=+.|+++.||..|+.++..+-.    ..+.+.+++.+++.+.|+++.||++|+-.+.+++...++.. ...+.+.
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~  183 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD  183 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence            566777789999999999998877643    34566788888999999999999999999988876544321 1223333


Q ss_pred             HHhhccCCCcccccch-h---hcC---ccchHHHHHHHHHhh---cCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHH
Q psy14015        172 FRNLCQDDTPMQQGHV-W---ECG---SGVKAELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIP  239 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~v-~---~~~---~~~~~~ll~~l~~l~---~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp  239 (318)
                      +.++..|.+|.|.... .   ++.   +...+-..+.+.+++   .+-+.--+-.+...|..    ..+  +.....++.
T Consensus       184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~----y~P~~~~e~~~il~  259 (746)
T PTZ00429        184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA----QRPSDKESAETLLT  259 (746)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh----cCCCCcHHHHHHHH
Confidence            4444555555433310 0   000   000001111111111   11111111112222211    111  112345777


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLR  312 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~  312 (318)
                      .+...++..+..|--++++++..+.....++...   ..+.+.++.+++           ..|++|+-+.+++.+=
T Consensus       260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-----------s~~eiqyvaLr~I~~i  324 (746)
T PTZ00429        260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-----------RDAETQYIVCKNIHAL  324 (746)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-----------CCccHHHHHHHHHHHH
Confidence            7777778888899998888888877655443222   234466666654           5789999888876543

>KOG0166|consensus

Probab=98.82  E-value=2.7e-07  Score=87.36  Aligned_cols=242  Identities=17%  Similarity=0.246  Sum_probs=168.3

Q ss_pred             HHHHHHHhc-CccHHHHHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch-
Q psy14015         15 IAVLIDELK-NEDVQLRLNSIKKLSTIALALGQER---TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV-   88 (318)
Q Consensus        15 i~~l~~~l~-~~~~~~R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~-   88 (318)
                      ++.+.+-|. ++++.++.+++..|..||..-....   .....+|.+..++..++. |+..++.+|+.++..  ++.+. 
T Consensus       111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~Rd  188 (514)
T KOG0166|consen  111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCRD  188 (514)
T ss_pred             HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHHH
Confidence            456667775 6678999999999999985321110   233568888899888776 999999999998742  12222 


Q ss_pred             ----hccc-hHHhhhccCchhHHHHHHHHHHHHHHhhCC---hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015         89 ----HCLL-PPLESLATVEETVVRDKAVESLRLISAQHS---PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        89 ----~~ll-p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~  160 (318)
                          ..++ |++..+..+........++-+|..++..-.   +-+....++|.+..++++.+..+..-||+.+..+...-
T Consensus       189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~  268 (514)
T KOG0166|consen  189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS  268 (514)
T ss_pred             HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence                2233 344444333333455556667888886652   23455569999999999988888888888877554433


Q ss_pred             CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-----hhHh
Q psy14015        161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-----YLKT  235 (318)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-----~~~~  235 (318)
                      .+..+..                          ....+.|.+..++......|+-.|..++|.++.  |.+     -+..
T Consensus       269 ne~iq~v--------------------------i~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~  320 (514)
T KOG0166|consen  269 NEKIQMV--------------------------IDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINS  320 (514)
T ss_pred             hHHHHHH--------------------------HHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhc
Confidence            3222111                          234568999999999999999999999999764  332     2334


Q ss_pred             hHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccc
Q psy14015        236 DIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       236 ~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D  286 (318)
                      ..+|.|..++. .+...+|+.|+..++++...-...   .....++|.++.+++.
T Consensus       321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~  375 (514)
T KOG0166|consen  321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT  375 (514)
T ss_pred             ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence            58999999998 778889999999999999732211   1223599999999998

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.82  E-value=2.8e-08  Score=72.91  Aligned_cols=85  Identities=32%  Similarity=0.404  Sum_probs=67.7

Q ss_pred             HHHHHhh-cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC
Q psy14015        132 PLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT  210 (318)
Q Consensus       132 p~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~  210 (318)
                      |.+.+.+ +|+++.+|..++..++.+                                     ...+.+|.+..+++|++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-------------------------------------~~~~~~~~L~~~l~d~~   44 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGEL-------------------------------------GDPEAIPALIELLKDED   44 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC-------------------------------------THHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHc-------------------------------------CCHhHHHHHHHHHcCCC
Confidence            4555555 889999999998888732                                     22567899999999999


Q ss_pred             HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC-cHHHHHHHHHHHH
Q psy14015        211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACV  261 (318)
Q Consensus       211 ~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~-~~~VR~aa~~~l~  261 (318)
                      +.||..++.+|+.++.        ...+|.+.+++.|+ ++.||.+++.+|+
T Consensus        45 ~~vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   45 PMVRRAAARALGRIGD--------PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHHHHHHCCHH--------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            9999999999999863        45788888877664 6678999998875

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.76  E-value=2e-06  Score=83.61  Aligned_cols=280  Identities=19%  Similarity=0.215  Sum_probs=180.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--H-hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--cch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--E-RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--EYV   88 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~-~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--~~~   88 (318)
                      .+.+...|.++++.+|.-+++.+..++..-+.  + -...+++|.+..++.|++. |...+++.|..+++.-.+-  -+.
T Consensus        79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~  158 (503)
T PF10508_consen   79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD  158 (503)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence            45677889999999999999998887533110  1 1235789999999988776 9999999999998643221  112


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK  165 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~  165 (318)
                      ..+++.+..++...++.+|..+.+.+..++...+..  .+. .-+++.+.+.+.+++.-+|.++++++..+...  ....
T Consensus       159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~--~~g~  236 (503)
T PF10508_consen  159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET--PHGL  236 (503)
T ss_pred             cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC--hhHH
Confidence            223777888887778899999999999998775442  122 12777777777788889999999999987652  2111


Q ss_pred             HHHH--HHHHhhc---c--CCCccccc-------c----hhhcCc----cchHHHHHHHHHhhcCCCHHHHHHHHHhhHH
Q psy14015        166 AELR--SHFRNLC---Q--DDTPMQQG-------H----VWECGS----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGE  223 (318)
Q Consensus       166 ~~l~--~~~~~l~---~--~~~~~vR~-------~----v~~~~~----~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~  223 (318)
                      ..+.  ..+..++   .  ..+|..+.       +    +....+    .....++..+.+..+..+...|..|..++|.
T Consensus       237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~  316 (503)
T PF10508_consen  237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ  316 (503)
T ss_pred             HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            1111  1222221   1  11221111       0    000011    1123455555677788999999999999999


Q ss_pred             HHHHhc-hhh-------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhH--hhHH-------------HH
Q psy14015        224 LAKVVE-VDY-------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQ--LVMP-------------TL  280 (318)
Q Consensus       224 l~~~~~-~~~-------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~--~l~p-------------~l  280 (318)
                      ++.... .+.       ....++..+....+.....+|..+..+++.+...-+.....+  .+..             .+
T Consensus       317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l  396 (503)
T PF10508_consen  317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL  396 (503)
T ss_pred             HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence            995432 211       223456666666777888899999999999875443311111  1222             55


Q ss_pred             HHhccccccccccCCCCCCchhhHHh
Q psy14015        281 RQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       281 ~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ..+++.          +||++|..+-
T Consensus       397 ~~~~~q----------PF~elr~a~~  412 (503)
T PF10508_consen  397 MSLLKQ----------PFPELRCAAY  412 (503)
T ss_pred             HHHhcC----------CchHHHHHHH
Confidence            566666          9999998765

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1241|consensus

Probab=98.76  E-value=7.3e-07  Score=86.60  Aligned_cols=269  Identities=15%  Similarity=0.118  Sum_probs=158.3

Q ss_pred             HHHHHHHhcCccHH-HHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhc-CC-hHH-HHHHHHHHHcccccCcC----
Q psy14015         15 IAVLIDELKNEDVQ-LRLNSIKKLSTIALALGQERT---RGELIPFLTETI-YD-EDE-VLLALAEQLGTFTPNVG----   83 (318)
Q Consensus        15 i~~l~~~l~~~~~~-~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~-~D-~~~-VR~~aa~~L~~l~~~~~----   83 (318)
                      |..+....-++++. ++..+++.++-++..+.|+..   .+.++..+..-. .. .+. ||-++...|..-.++.+    
T Consensus       131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~  210 (859)
T KOG1241|consen  131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN  210 (859)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence            44555555556654 899999999999999888753   334555555433 33 333 99999998876544332    


Q ss_pred             cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhc---
Q psy14015         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCY---  157 (318)
Q Consensus        84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~---  157 (318)
                      .+.-.++|+...-.....++..||.+|..+|..|....=+  +.+. +.+.++-..-.++++..|..-+++--+.++   
T Consensus       211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE  290 (859)
T KOG1241|consen  211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE  290 (859)
T ss_pred             cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            3333455666655566677788888888888877653211  0011 112222222122222222222211111000   


Q ss_pred             -----------c-ccC-------c----chHHHHHHHHHhhcc-CCCcc-----ccc---chhh-----cCccchHHHHH
Q psy14015        158 -----------P-RVT-------A----GVKAELRSHFRNLCQ-DDTPM-----QQG---HVWE-----CGSGVKAELRS  200 (318)
Q Consensus       158 -----------~-~~~-------~----~~~~~l~~~~~~l~~-~~~~~-----vR~---~v~~-----~~~~~~~~ll~  200 (318)
                                 . ...       .    .+...+.   ..|++ +.++.     .-.   .|..     .+++.-.+++|
T Consensus       291 iD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll---~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~  367 (859)
T KOG1241|consen  291 IDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL---ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLP  367 (859)
T ss_pred             HHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH---HHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHH
Confidence                       0 000       0    1111111   12222 11110     000   0110     11234567888


Q ss_pred             HHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh----hhhh
Q psy14015        201 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVE  273 (318)
Q Consensus       201 ~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~----~~~~  273 (318)
                      .+.+-.+.++|+-|.+++.+||.+...-.++.   .....+|.+.++..||+-+||.+++.+++.+++.+..    +...
T Consensus       368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l  447 (859)
T KOG1241|consen  368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL  447 (859)
T ss_pred             HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence            88888999999999999999999987443332   3567899999999999999999999999999988754    3344


Q ss_pred             HhhHHHHHHhccc
Q psy14015        274 QLVMPTLRQCSVQ  286 (318)
Q Consensus       274 ~~l~p~l~~ll~D  286 (318)
                      +.+++++..-|+|
T Consensus       448 ~~~l~~l~~gL~D  460 (859)
T KOG1241|consen  448 QSKLSALLEGLND  460 (859)
T ss_pred             hHHHHHHHHHhhh
Confidence            5678888888888

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.76  E-value=1.4e-06  Score=82.39  Aligned_cols=265  Identities=15%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             HHhcCccHHHHHHHHHhHHHHHHh-hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhh
Q psy14015         20 DELKNEDVQLRLNSIKKLSTIALA-LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLES   97 (318)
Q Consensus        20 ~~l~~~~~~~R~~~~~~L~~ia~~-lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~   97 (318)
                      +++++.-..+-+++++.....+.. +|++ .....+..|..++.-... .|-+|.+.|.+++.  ..++-....-+-+..
T Consensus       271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam--~~P~kv~vcN~evEs  347 (898)
T COG5240         271 SWLSDKFEMVFLEAARAVCALSEENVGSQ-FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM--KYPQKVSVCNKEVES  347 (898)
T ss_pred             HHhcCcchhhhHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh--hCCceeeecChhHHH
Confidence            444443344444555555444433 3444 233334444444444333 55555666555543  112222233345566


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhcc
Q psy14015         98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ  177 (318)
Q Consensus        98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~  177 (318)
                      |..|.+..+-..|+.+|.+-+   +.+.+. .++..+-.+.+|-+-.-+..++..+..++..++..-...+--....||.
T Consensus       348 LIsd~Nr~IstyAITtLLKTG---t~e~id-rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~  423 (898)
T COG5240         348 LISDENRTISTYAITTLLKTG---TEETID-RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ  423 (898)
T ss_pred             HhhcccccchHHHHHHHHHcC---chhhHH-HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence            666666555555544444333   222222 2444455555554444445555555444444433222222111123333


Q ss_pred             CCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh-------------chh----hhHhhHHHH
Q psy14015        178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV-------------EVD----YLKTDIIPM  240 (318)
Q Consensus       178 ~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~-------------~~~----~~~~~llp~  240 (318)
                      -.+-           .+++.++..+..... ..|.-|.-|...|..+.+-+             |.|    ......+-.
T Consensus       424 eGg~-----------eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh  491 (898)
T COG5240         424 EGGL-----------EFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH  491 (898)
T ss_pred             cccc-----------hHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH
Confidence            2222           356666666666653 33444555555555554422             221    000111222


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhh
Q psy14015        241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMR  315 (318)
Q Consensus       241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~  315 (318)
                      +.+-+-=++..||.+|+.++..++-..+.....+.+...+.+|++|          .+.+||-.+.  ..|+.|+
T Consensus       492 IyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD----------~DdeVRdrAs--f~l~~~~  554 (898)
T COG5240         492 IYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND----------QDDEVRDRAS--FLLRNMR  554 (898)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc----------ccHHHHHHHH--HHHHhhh
Confidence            2222233566899999999999998877777788899999999999          8888887765  5555554

>KOG0213|consensus

Probab=98.68  E-value=1.5e-06  Score=84.30  Aligned_cols=234  Identities=16%  Similarity=0.189  Sum_probs=174.5

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHh---hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc---cc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALA---LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP---EY   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~---lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~---~~   87 (318)
                      +...+..|++..+.+|+.+++..+.++..   +|.+.....+--.|-+.+..+++ |--.+..+++.+...+|-.   -.
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP  880 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP  880 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence            45566889999999999998888888754   67766666666566666655554 9888888888887766632   23


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh----hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ...++|-+...+++....|.+.++.-++.|+...++    ..++.+-..++ ++++.-.-.+|.+|...||-|...++. 
T Consensus       881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl-elLkahkK~iRRaa~nTfG~IakaIGP-  958 (1172)
T KOG0213|consen  881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL-ELLKAHKKEIRRAAVNTFGYIAKAIGP-  958 (1172)
T ss_pred             hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHhcCH-
Confidence            456888888888889999999999999999976543    44555433333 344544567888888888765443332 


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  243 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~  243 (318)
                                                      .+++..+++-++-+.-.-|-...-+++-+++.+|+    =.++|++.+
T Consensus       959 --------------------------------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----FtVLPalmn 1002 (1172)
T KOG0213|consen  959 --------------------------------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----FTVLPALMN 1002 (1172)
T ss_pred             --------------------------------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----hhhhHHHHh
Confidence                                            44566666666656666777788888888888886    348999999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015        244 LAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       244 ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D  286 (318)
                      =..-|+..|+...+.++.-+.+.+|..  +..-.+.|.+...+.|
T Consensus      1003 eYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD 1047 (1172)
T KOG0213|consen 1003 EYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD 1047 (1172)
T ss_pred             hccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc
Confidence            999999999999999999999999874  3344589999999999

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.64  E-value=1.4e-07  Score=69.12  Aligned_cols=84  Identities=29%  Similarity=0.351  Sum_probs=67.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhH
Q psy14015        199 RSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM  277 (318)
Q Consensus       199 l~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~  277 (318)
                      +|.+.+.+ +|+++.||..++..|+.+..        ...+|.+..+++|+++.||.+++.+++.+.        .+..+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence            46777777 89999999999999996643        468999999999999999999999999875        24578


Q ss_pred             HHHHHhccccccccccCCCC-CCchhhHHhhh
Q psy14015        278 PTLRQCSVQIVDHKFCPNNE-FHPLELHVISA  308 (318)
Q Consensus       278 p~l~~ll~D~~~~~~~~~~~-~~~Vr~~~i~~  308 (318)
                      |.+.+++.|          + +..||..+++.
T Consensus        65 ~~L~~~l~~----------~~~~~vr~~a~~a   86 (88)
T PF13646_consen   65 PALIKLLQD----------DDDEVVREAAAEA   86 (88)
T ss_dssp             HHHHHHHTC-----------SSHHHHHHHHHH
T ss_pred             HHHHHHHcC----------CCcHHHHHHHHhh
Confidence            889998877          4 34458777654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.61  E-value=4.1e-06  Score=79.90  Aligned_cols=243  Identities=12%  Similarity=0.115  Sum_probs=177.1

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHH---HhhChHhHhhchhhhhhhhcCC-hHHHHHHHHHHHcccccCcCc---ccc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIA---LALGQERTRGELIPFLTETIYD-EDEVLLALAEQLGTFTPNVGG---PEY   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia---~~lg~~~~~~~llp~l~~l~~D-~~~VR~~aa~~L~~l~~~~~~---~~~   87 (318)
                      +...+..|++..+.+|..+++..+.++   +.+|.......+--.|-+-+.. ..||--.+..++..+....+-   +-.
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP  685 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP  685 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence            566778999999999999888777766   4577765555665555555544 445888877777766554331   123


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh----hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ...|+|-+...+.+....|-...+.-++.|+...++    ..++.+-..++ .++++-+-.+|.+|...||.+...++. 
T Consensus       686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~aiGP-  763 (975)
T COG5181         686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV-DSLKSWNKEIRRNATETFGCISRAIGP-  763 (975)
T ss_pred             hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhcCH-
Confidence            455777777777888888888888888888866543    45555444443 344555567999998888865433332 


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  243 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~  243 (318)
                                                      .+++.+++.-++-+.-.-|-..+-+++-+++.+|+    =.++|.+..
T Consensus       764 --------------------------------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----fsVlP~lm~  807 (975)
T COG5181         764 --------------------------------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----FSVLPTLMS  807 (975)
T ss_pred             --------------------------------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----hhhHHHHHh
Confidence                                            45677777777767777888888889999998887    358999999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccccccccccCCCCCCchhhHH
Q psy14015        244 LAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHV  305 (318)
Q Consensus       244 ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~  305 (318)
                      -..-|+..|+.....++.-+.+.+|+..  ..-.+.|.+...+.|          ++|--|...
T Consensus       808 dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD----------rD~vhRqta  861 (975)
T COG5181         808 DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD----------RDPVHRQTA  861 (975)
T ss_pred             cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc----------cchHHHHHH
Confidence            9999999999999999999999998853  334689999999999          777666543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.57  E-value=6.9e-07  Score=66.75  Aligned_cols=69  Identities=23%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh--HhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015        194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL--KTDIIPMFVNLAQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~--~~~llp~l~~ll~D~~~~VR~aa~~~l~~l  263 (318)
                      ..++++|+++..++|++|+||..|+++|..++...+.+..  ..++++.+.+++.|++..||.++ +.+..+
T Consensus        24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence            3477899999999999999999999999999998876532  46789999999999999999987 444433

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.53  E-value=1.4e-05  Score=77.79  Aligned_cols=257  Identities=16%  Similarity=0.138  Sum_probs=161.6

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchh
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVH   89 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~   89 (318)
                      |...+.+.+++.+...=..++..|..+.....+........|++...+..+++ ||.-++++++.++..-.+   .-...
T Consensus        39 ~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   39 PEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             hHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            33346677877766655566777777776666666678889999998888777 999999998887642211   01225


Q ss_pred             ccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh-hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE  167 (318)
Q Consensus        90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~  167 (318)
                      .+++.+..++.|++..|...|..+|..++..... +.+ ...+++.+.++...++..+|..+.+++..+... ++.....
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~  197 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEA  197 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHH
Confidence            5889999999999999999999999999976432 112 223477777777665556676666666554322 1111111


Q ss_pred             HHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh-chh-----hhHhhHHHHH
Q psy14015        168 LRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV-EVD-----YLKTDIIPMF  241 (318)
Q Consensus       168 l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~-~~~-----~~~~~llp~l  241 (318)
                                               ...+.+++.+...+++++..||.+++..++.++..- |.+     .+.+.+...+
T Consensus       198 -------------------------~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l  252 (503)
T PF10508_consen  198 -------------------------VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLL  252 (503)
T ss_pred             -------------------------HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHH
Confidence                                     122458899999999999999999999999999732 222     2233344444


Q ss_pred             HHhhcCC-cHHHH-HHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        242 VNLAQDE-QDSVR-LLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       242 ~~ll~D~-~~~VR-~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      .....|| ...+. -..+...+.++.. ++..+.   ..++..+..++..          .++..+..++.
T Consensus       253 ~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s----------~d~~~~~~A~d  312 (503)
T PF10508_consen  253 QDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLES----------QDPTIREVAFD  312 (503)
T ss_pred             hccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCC----------CChhHHHHHHH
Confidence            4444555 22211 1222333444433 333222   2344455555555          67777766653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0213|consensus

Probab=98.53  E-value=4.4e-06  Score=81.17  Aligned_cols=214  Identities=17%  Similarity=0.225  Sum_probs=156.5

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChH-H-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDED-E-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~-~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      .++=..+.-.+.-|.++++.|.+=+..+|.....+.++|.+-... +|.. + +-+.+-+.|.++-..+  .-+...|+-
T Consensus       367 ~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVhkILv  444 (1172)
T KOG0213|consen  367 RLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVHKILV  444 (1172)
T ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhceeeeEE
Confidence            333344556677899999999999888998888899999997654 4432 3 5566666666664322  224566888


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                      .+..++.|++...|...-+.+..++...+-......+-|=    ..+....||...+..++.+...++            
T Consensus       445 Viepllided~yar~egreIisnLakaaGla~mistmrpD----idn~deYVRnttarafavvasalg------------  508 (1172)
T KOG0213|consen  445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPD----IDNKDEYVRNTTARAFAVVASALG------------  508 (1172)
T ss_pred             EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCC----cccccHHHHHHHHHHHHHHHHHhC------------
Confidence            8999999999999999988888888766543222211111    133456788887777664433222            


Q ss_pred             hhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhchhhh--HhhHHHHHHHhhcCCcH
Q psy14015        174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVEVDYL--KTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~~~~--~~~llp~l~~ll~D~~~  250 (318)
                                           -..++|.+..+|... +|.-|...+++.-+++..+|-...  ...++.++.+.+.|.+.
T Consensus       509 ---------------------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~q  567 (1172)
T KOG0213|consen  509 ---------------------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQ  567 (1172)
T ss_pred             ---------------------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccch
Confidence                                 266889999999987 899999999999999998885422  34577788899999999


Q ss_pred             HHHHHHHHHHHHHHhhCCh
Q psy14015        251 SVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       251 ~VR~aa~~~l~~l~~~l~~  269 (318)
                      -||..++.+++.+++..++
T Consensus       568 kVR~itAlalsalaeaa~P  586 (1172)
T KOG0213|consen  568 KVRTITALALSALAEAATP  586 (1172)
T ss_pred             hhhhHHHHHHHHHHHhcCC
Confidence            9999999999999987766

>KOG0567|consensus

Probab=98.45  E-value=4.3e-06  Score=72.22  Aligned_cols=179  Identities=21%  Similarity=0.175  Sum_probs=109.2

Q ss_pred             hchhhhhhhhcCChH--H-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--
Q psy14015         51 GELIPFLTETIYDED--E-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--  125 (318)
Q Consensus        51 ~~llp~l~~l~~D~~--~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--  125 (318)
                      .+-+|.+...+.|++  + ||..+++.|+.+.        ...+++++..+.+|+-..||+.+..++..+--.-.-..  
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~  137 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIA  137 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccc
Confidence            345777777776633  4 8888888888763        23467788887788888888877666665532211000  


Q ss_pred             --------------HhhhHHHHHHHhhcCCC--chhhhhh------------hhhhhhhccccCcchHHHHHHHHHhhcc
Q psy14015        126 --------------LEAHFVPLVQRLASGDW--FTSRTSA------------CGLFSVCYPRVTAGVKAELRSHFRNLCQ  177 (318)
Q Consensus       126 --------------~~~~ilp~~~~l~~d~~--~~vR~~a------------~~~l~~~~~~~~~~~~~~l~~~~~~l~~  177 (318)
                                    ... =+.-+...+.|..  -.-|+.|            +..|..-...-+..+|.+.+-.|++|.+
T Consensus       138 ~~~p~~SvdPa~p~~~s-sv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s  216 (289)
T KOG0567|consen  138 NSSPYISVDPAPPANLS-SVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS  216 (289)
T ss_pred             ccCccccCCCCCccccc-cHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc
Confidence                          000 0111111122211  1112211            1112111111123355555555555433


Q ss_pred             CCCcccccchhhcCccchHHHHHHHHHhhcC--CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHH
Q psy14015        178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLL  255 (318)
Q Consensus       178 ~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D--~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~a  255 (318)
                                        +..+|.+.+.+.|  +++.||.-|+.+||.++.        ++.+++++..++|+.+.||..
T Consensus       217 ------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~es  270 (289)
T KOG0567|consen  217 ------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRES  270 (289)
T ss_pred             ------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHH
Confidence                              4557888888777  579999999999999986        678999999999999999999


Q ss_pred             HHHHHHHHH
Q psy14015        256 AVEACVSIA  264 (318)
Q Consensus       256 a~~~l~~l~  264 (318)
                      +.-++.-.-
T Consensus       271 c~valdm~e  279 (289)
T KOG0567|consen  271 CEVALDMLE  279 (289)
T ss_pred             HHHHHHHHH
Confidence            988776544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.40  E-value=2.3e-06  Score=63.96  Aligned_cols=83  Identities=18%  Similarity=0.168  Sum_probs=71.6

Q ss_pred             HHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccccc
Q psy14015        213 VRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       213 VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D~~  288 (318)
                      -|+....+|..++..+|.+  ...+.++|.+...+.|++|.||..+++++.++++..+.+.  +...+++.+.+++.|  
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D--   79 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD--   79 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence            4888888999998888764  3457899999999999999999999999999999887764  356799999999999  


Q ss_pred             cccccCCCCCCchhhHH
Q psy14015        289 DHKFCPNNEFHPLELHV  305 (318)
Q Consensus       289 ~~~~~~~~~~~~Vr~~~  305 (318)
                              .+++||...
T Consensus        80 --------~d~~Vr~~a   88 (97)
T PF12755_consen   80 --------PDENVRSAA   88 (97)
T ss_pred             --------CchhHHHHH
Confidence                    999998776

>KOG4224|consensus

Probab=98.37  E-value=2.5e-06  Score=76.81  Aligned_cols=207  Identities=20%  Similarity=0.175  Sum_probs=142.9

Q ss_pred             chhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccchhccc---hHHhhhccCchhHHHHHHHHHHHHHHhhCChh-HH
Q psy14015         52 ELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL---PPLESLATVEETVVRDKAVESLRLISAQHSPH-DL  126 (318)
Q Consensus        52 ~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ll---p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~  126 (318)
                      ..-|.+. +++..+ .+.+++...++.|+-..+.....-.+.   |++.++..| ..+||..|+.++..++..-+-. .+
T Consensus        86 s~epvl~-llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki  163 (550)
T KOG4224|consen   86 SNEPVLA-LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI  163 (550)
T ss_pred             hhhHHHH-HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence            3445544 445444 489999999999987666544433333   477777666 4677888899999998873222 11


Q ss_pred             --hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015        127 --EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN  204 (318)
Q Consensus       127 --~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~  204 (318)
                        ...+.|... |.+.+..++|+.+.+.|-.+-.  +.+.|+.+                         +..--+|.+.+
T Consensus       164 A~sGaL~pltr-LakskdirvqrnatgaLlnmTh--s~EnRr~L-------------------------V~aG~lpvLVs  215 (550)
T KOG4224|consen  164 ARSGALEPLTR-LAKSKDIRVQRNATGALLNMTH--SRENRRVL-------------------------VHAGGLPVLVS  215 (550)
T ss_pred             hhccchhhhHh-hcccchhhHHHHHHHHHHHhhh--hhhhhhhh-------------------------hccCCchhhhh
Confidence              123555554 8888889999999887764422  12233332                         11223799999


Q ss_pred             hhcCCCHHHHHHHHHhhHHHHHHhch-h---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC--hhhhhHhhHH
Q psy14015        205 LCQDDTPMVRRAAAGKLGELAKVVEV-D---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS--QSDVEQLVMP  278 (318)
Q Consensus       205 l~~D~~~~VR~~aa~~L~~l~~~~~~-~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~--~~~~~~~l~p  278 (318)
                      ++...+..||+.|..+++.++-.--. .   ....+++|.+..|+.|++..|+..+..++..++..-.  .+.++.--+|
T Consensus       216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP  295 (550)
T KOG4224|consen  216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLP  295 (550)
T ss_pred             hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCch
Confidence            99999999999999999998842111 1   1234599999999999999999999999999885321  1233344689


Q ss_pred             HHHHhccccc
Q psy14015        279 TLRQCSVQIV  288 (318)
Q Consensus       279 ~l~~ll~D~~  288 (318)
                      .+.+++.|+.
T Consensus       296 ~lv~Llqs~~  305 (550)
T KOG4224|consen  296 LLVELLQSPM  305 (550)
T ss_pred             HHHHHHhCcc
Confidence            9999998876

>KOG1824|consensus

Probab=98.37  E-value=4.8e-05  Score=75.91  Aligned_cols=267  Identities=15%  Similarity=0.101  Sum_probs=151.3

Q ss_pred             CCCCchHHHHHHHhcCcc--HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc
Q psy14015          9 DDSLYPIAVLIDELKNED--VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus         9 ~~~l~~i~~l~~~l~~~~--~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~   85 (318)
                      +++=.-..+++..++++.  ..+|.=+.-.|++++...+.- -..++-..+.+......| |+.+|+-+||.++-  |  
T Consensus       813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s-~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--g--  887 (1233)
T KOG1824|consen  813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS-PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--G--  887 (1233)
T ss_pred             ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC-cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--C--
Confidence            334444566777777444  456677788888887654322 234455566666676666 99999999998863  2  


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                       ..+..+|.+...... ++.=..--+.++.++....+.   ....+.|+.++.+-++......|...++.+|+++-.-++
T Consensus       888 -nl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe  965 (1233)
T KOG1824|consen  888 -NLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE  965 (1233)
T ss_pred             -chHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH
Confidence             234455544333221 111122233334333332211   233445777776666666666777777777776543332


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhc-----------CccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWEC-----------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-  230 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~-----------~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-  230 (318)
                      .    +...+....+...+..|..+...           .+...+.-+.-|+.+++|++.+||+.|...|...+.+-.. 
T Consensus       966 s----LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen  966 S----LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred             H----HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence            2    22233344445555544422210           1123455566788899999999999999988888764221 


Q ss_pred             -hhhHhhHHHHHHHhh------------------cCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        231 -DYLKTDIIPMFVNLA------------------QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       231 -~~~~~~llp~l~~ll------------------~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                       .++..+++|.+..=.                  -|..-++|+++.+++=.+.+.+-....-...+..+..-|+|
T Consensus      1042 IrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~D 1116 (1233)
T KOG1824|consen 1042 IRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLED 1116 (1233)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcch
Confidence             123344555443321                  25566889999988877776553332233344466677777

>KOG0212|consensus

Probab=98.36  E-value=8.3e-06  Score=77.08  Aligned_cols=236  Identities=17%  Similarity=0.169  Sum_probs=168.8

Q ss_pred             cCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc--chhccchHHhh
Q psy14015         23 KNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE--YVHCLLPPLES   97 (318)
Q Consensus        23 ~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~   97 (318)
                      .+.+..-|....-.+..++-.+|.+.  ..+.++|=+.....|.+. ||.-+++.|..+++...+..  +.+.+...+-.
T Consensus        53 ~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k  132 (675)
T KOG0212|consen   53 YSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK  132 (675)
T ss_pred             cCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence            35555556666666666666688764  234455555567788777 99999999999998765532  34667788888


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhCCh-hH---HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         98 LATVEETVVRDKAVESLRLISAQHSP-HD---LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        98 l~~d~~~~VR~~a~~~l~~l~~~~~~-~~---~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                      +..|.+..||..| +.+..+.+-... ++   -...++|.+..-..+.++..|...++++..+...-.   .        
T Consensus       133 lsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~---~--------  200 (675)
T KOG0212|consen  133 LSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD---L--------  200 (675)
T ss_pred             HhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc---H--------
Confidence            8999999998764 455555544322 11   223488888877777778888888777764432211   0        


Q ss_pred             hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--h-hHhhHHHHHHHhhcCCcH
Q psy14015        174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--Y-LKTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~-~~~~llp~l~~ll~D~~~  250 (318)
                      ++++                ...++++-+.+++.|++.+||..+=..++++-..+..+  . ...+.++++..-+..+++
T Consensus       201 ~m~~----------------yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~  264 (675)
T KOG0212|consen  201 EMIS----------------YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP  264 (675)
T ss_pred             HHHh----------------cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcH
Confidence            1111                23678899999999999999999999999888766432  1 245688999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccc
Q psy14015        251 SVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       251 ~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D  286 (318)
                      ..+..|..=|..+.+..|+.-  ....++..+++|+.|
T Consensus       265 ~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~  302 (675)
T KOG0212|consen  265 EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD  302 (675)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC
Confidence            999999999999998888763  345577788888888

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.36  E-value=2.8e-05  Score=68.59  Aligned_cols=209  Identities=15%  Similarity=0.127  Sum_probs=134.0

Q ss_pred             hhcC-ChHH-HHHHHHHHHcccccCcCcccch--hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHH
Q psy14015         59 ETIY-DEDE-VLLALAEQLGTFTPNVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLV  134 (318)
Q Consensus        59 ~l~~-D~~~-VR~~aa~~L~~l~~~~~~~~~~--~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~  134 (318)
                      .+++ ..++ ++..+.-.++..+..-...+..  -..++++..++.++++.||+.|+.++..++.........+.+++.+
T Consensus        19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V   98 (254)
T PF04826_consen   19 CLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV   98 (254)
T ss_pred             HHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            4444 3445 8888888888776432222222  2377899999999999999999999998887654433444567777


Q ss_pred             HHhhcCC--CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH
Q psy14015        135 QRLASGD--WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM  212 (318)
Q Consensus       135 ~~l~~d~--~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~  212 (318)
                      ++...+.  +..+..++..+|..+.  +.......+                           ...+|.|..++...+..
T Consensus        99 c~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l---------------------------~~~i~~ll~LL~~G~~~  149 (254)
T PF04826_consen   99 CEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHML---------------------------ANYIPDLLSLLSSGSEK  149 (254)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhH---------------------------HhhHHHHHHHHHcCChH
Confidence            6644332  3455666666666442  122111111                           22467778888888889


Q ss_pred             HHHHHHHhhHHHHHH--hchhhhHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhCChhhh--------h--------
Q psy14015        213 VRRAAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSDV--------E--------  273 (318)
Q Consensus       213 VR~~aa~~L~~l~~~--~~~~~~~~~llp~l~~ll~D~-~~~VR~aa~~~l~~l~~~l~~~~~--------~--------  273 (318)
                      +|..+.+.|..++..  +..+.+....++.|..+.+.. ...+-..+..-+.++...+.++..        .        
T Consensus       150 ~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~  229 (254)
T PF04826_consen  150 TKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG  229 (254)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence            999999988888864  234444455667777777665 566666677777888777766411        1        


Q ss_pred             --HhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        274 --QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       274 --~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                        +.+..-+..+...          ++++||..||
T Consensus       230 e~~~~~~~l~~l~~h----------~d~ev~~~v~  254 (254)
T PF04826_consen  230 ESSQLAKKLQALANH----------PDPEVKEQVI  254 (254)
T ss_pred             cHHHHHHHHHHHHcC----------CCHHHhhhcC
Confidence              1133344555566          8999998875

>KOG0915|consensus

Probab=98.35  E-value=1.1e-05  Score=83.84  Aligned_cols=223  Identities=17%  Similarity=0.188  Sum_probs=151.0

Q ss_pred             HHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHH
Q psy14015         32 NSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVR  107 (318)
Q Consensus        32 ~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR  107 (318)
                      ..-+.|..+|+.+|+.+..   ..|+ ++... ..| -|+.+|-.++.++..-|.  +-+...++|-|.++--||+..|+
T Consensus       940 sTYKELc~LASdl~qPdLV---YKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen  940 STYKELCNLASDLGQPDLV---YKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred             hHHHHHHHHHhhcCChHHH---HHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence            4555666667777765332   2233 56655 568 999999999999876543  23556699999999999999998


Q ss_pred             HHHHHHHHHHHhhCChhHHhhhHHHHHHHh---hcCCCchhhhhhhhhhhhhccccCcc-hHHHHHHHHHhhccCCCccc
Q psy14015        108 DKAVESLRLISAQHSPHDLEAHFVPLVQRL---ASGDWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLCQDDTPMQ  183 (318)
Q Consensus       108 ~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l---~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~l~~~~~~~v  183 (318)
                      .+-..+-..+..- ++..+.+++-.++.+|   +.+..|+||.++|-.+..++.+-... +..++               
T Consensus      1016 ~aM~sIW~~Li~D-~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--------------- 1079 (1702)
T KOG0915|consen 1016 DAMTSIWNALITD-SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--------------- 1079 (1702)
T ss_pred             HHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH---------------
Confidence            8766555555432 2333444444455554   46788999999999887665542211 11111               


Q ss_pred             ccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhh---HHHHHHhc-------hhhhHhhHHHHHH-HhhcCCcHHH
Q psy14015        184 QGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKL---GELAKVVE-------VDYLKTDIIPMFV-NLAQDEQDSV  252 (318)
Q Consensus       184 R~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L---~~l~~~~~-------~~~~~~~llp~l~-~ll~D~~~~V  252 (318)
                                  .++...+.....|-...||+++-...   ++++-.++       ...+...++|++- .-.-.....|
T Consensus      1080 ------------pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ev 1147 (1702)
T KOG0915|consen 1080 ------------PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEV 1147 (1702)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHH
Confidence                        34556667777788899998765544   44443332       2345677899664 3444778899


Q ss_pred             HHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015        253 RLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       253 R~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D  286 (318)
                      |+.+...+..+++.-|+.  -+...++|.+.....-
T Consensus      1148 r~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred             HHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence            999999999999988885  3556799999988876

>KOG0915|consensus

Probab=98.35  E-value=3.6e-05  Score=80.04  Aligned_cols=263  Identities=16%  Similarity=0.145  Sum_probs=161.7

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhc---hhhhhhhhcCChHH-HHHHHHHHHccccc---CcC----
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGE---LIPFLTETIYDEDE-VLLALAEQLGTFTP---NVG----   83 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~---llp~l~~l~~D~~~-VR~~aa~~L~~l~~---~~~----   83 (318)
                      +..++.++-+..|.+|.+++-+|..+..-=..+...+.   +.-.+-+..+|-.| ||.++-+....+.+   ..+    
T Consensus      1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence            45677889999999999999999998643222222232   22233355677677 99876555443333   222    


Q ss_pred             ---cccchhccchHHhh-hccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhh-hhhhhhhhhh
Q psy14015         84 ---GPEYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSR-TSACGLFSVC  156 (318)
Q Consensus        84 ---~~~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR-~~a~~~l~~~  156 (318)
                         ++.....++|.+.. =....-++||..++..+..++...+.+-  ....++|.+.+....-+..|= +.++.+.+  
T Consensus      1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~-- 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLIN-- 1198 (1702)
T ss_pred             cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhh--
Confidence               34566778887633 2336789999999999999999887743  223367766665443222211 12222110  


Q ss_pred             ccccCcchHHHHHHHHHhhccCCCcccc--cchhh-cCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhh
Q psy14015        157 YPRVTAGVKAELRSHFRNLCQDDTPMQQ--GHVWE-CGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDY  232 (318)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~l~~~~~~~vR--~~v~~-~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~  232 (318)
                             ...+..+..+.-+....|+.-  .+|.. +....-++++|.+.++..-.. -.-|-.|+.=+.-++..+|.|-
T Consensus      1199 -------~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1199 -------IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred             -------hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence                   111111112111111111100  00100 001245678888888877554 4567777777777887777652


Q ss_pred             --hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        233 --LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       233 --~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                        ...+++-++....+|.+..||++++.+++-++..=.++++++.+.-.+...+.+
T Consensus      1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred             CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence              345688888888899999999999999999998877777777777777777776

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.35  E-value=2.4e-05  Score=74.82  Aligned_cols=231  Identities=13%  Similarity=0.135  Sum_probs=155.4

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHh----hChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALA----LGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~----lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      .+.--|++..-++-.+.+.-++.|+.-    +|+..+.--....+..+-.-+.++|++|.+.++-+++.+|.++    ++
T Consensus       692 ~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd----vL  767 (975)
T COG5181         692 SLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD----VL  767 (975)
T ss_pred             cccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH----HH
Confidence            333445566666666888888888743    4444343334444444445577799999999999999888754    55


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                      .+|.+-++-++..-|.-..-++..++++.++-    .++|.+.+=-..++..|.......+.-++.+.++          
T Consensus       768 ~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~----------  833 (975)
T COG5181         768 DILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ----------  833 (975)
T ss_pred             HHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH----------
Confidence            56655566666666766666677777776653    3677765444456666666665555433333222          


Q ss_pred             HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---chhhhHhhHHHHHHHhhcCCc
Q psy14015        173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQ  249 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---~~~~~~~~llp~l~~ll~D~~  249 (318)
                        .+.|               .--.+.|.+...+.|.++--|..++.-+..++-.+   |.+...-+++..+-.-.-+|+
T Consensus       834 --~s~d---------------Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~s  896 (975)
T COG5181         834 --ASLD---------------YVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPS  896 (975)
T ss_pred             --HHHH---------------HHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCC
Confidence              1111               22346788999999999999998887777776543   445555567777777778999


Q ss_pred             HHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       250 ~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      ++|.+++-+++..++..+|+-....+    +.+-|-.
T Consensus       897 Phvi~~~~Eg~e~~~~~lg~g~~m~Y----v~qGLFH  929 (975)
T COG5181         897 PHVIQSFDEGMESFATVLGSGAMMKY----VQQGLFH  929 (975)
T ss_pred             cHHHHHHHHHHHHHHHHhccHHHHHH----HHHhccC
Confidence            99999999999999999988765554    5555666

>KOG2137|consensus

Probab=98.35  E-value=1.5e-05  Score=77.62  Aligned_cols=237  Identities=16%  Similarity=0.215  Sum_probs=162.7

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHH--HHHHHHHcccccCcCcccchhccchH
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL--LALAEQLGTFTPNVGGPEYVHCLLPP   94 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR--~~aa~~L~~l~~~~~~~~~~~~llp~   94 (318)
                      ..+|.+.-.++.......+.|.++-..+...-....++|.+.+.+.++.-|=  .-...   .+++-....++...++|.
T Consensus       277 rfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~---~i~~~~s~~~~~~~~~p~  353 (700)
T KOG2137|consen  277 RFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVL---LIAEGLSQNEFGPKMLPA  353 (700)
T ss_pred             hhcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhh---hhhhccchhhhhhhhhHH
Confidence            3445554456666678888888887777777677888888876664433221  11111   122212234456667777


Q ss_pred             Hhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         95 LESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        95 l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                      +....+ .....++..-++-+.-|.++.+++++.+.++|.+..-.+|....+...+...++.+...+.-           
T Consensus       354 l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~-----------  422 (700)
T KOG2137|consen  354 LKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV-----------  422 (700)
T ss_pred             HHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH-----------
Confidence            777655 44677788888888889999999999999999999989998888887777776654333221           


Q ss_pred             hhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh-hcCCcHH
Q psy14015        174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL-AQDEQDS  251 (318)
Q Consensus       174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l-l~D~~~~  251 (318)
                                        ...++.++|.+..++- ..+..|+-+++.+++.+.+.+..-.+.+.++|++... ..||...
T Consensus       423 ------------------~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv  484 (700)
T KOG2137|consen  423 ------------------PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIV  484 (700)
T ss_pred             ------------------HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHH
Confidence                              1356778999987754 5679999999999999999888777788899988887 5555433


Q ss_pred             HHHHHHHHHHHHHh--hCChhhhhHhhHHHHHHhcccc
Q psy14015        252 VRLLAVEACVSIAS--LLSQSDVEQLVMPTLRQCSVQI  287 (318)
Q Consensus       252 VR~aa~~~l~~l~~--~l~~~~~~~~l~p~l~~ll~D~  287 (318)
                        ..+......+.-  .-|.+...+.++|.+..+..-+
T Consensus       485 --~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  485 --MGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             --HHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence              333343333332  2234666778999888887753

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.34  E-value=3.2e-05  Score=64.72  Aligned_cols=148  Identities=18%  Similarity=0.173  Sum_probs=101.0

Q ss_pred             hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcc
Q psy14015        103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM  182 (318)
Q Consensus       103 ~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~  182 (318)
                      ++.||..++.+++.++...+.  ..+..+|.+...++|+++.||..|...+..++..                  +.-  
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~------------------d~i--   58 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE------------------DMI--   58 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc------------------Cce--
Confidence            468999999999999988763  4455788888889999999999998887654321                  000  


Q ss_pred             cccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH-----HHHHHHH
Q psy14015        183 QQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD-----SVRLLAV  257 (318)
Q Consensus       183 vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~-----~VR~aa~  257 (318)
                                ..+..++..+..++.|++++||..|...|.++...-+++.+.+.+.+.+..+.+-.++     .-+....
T Consensus        59 ----------k~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~  128 (178)
T PF12717_consen   59 ----------KVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRK  128 (178)
T ss_pred             ----------eehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHH
Confidence                      1446677888888999999999999999999999876766666666666666553321     1222333


Q ss_pred             HHHHHHHhhCChhhhhHhhHHHHHH
Q psy14015        258 EACVSIASLLSQSDVEQLVMPTLRQ  282 (318)
Q Consensus       258 ~~l~~l~~~l~~~~~~~~l~p~l~~  282 (318)
                      ..+.-+.+.+.++.....++.-+.+
T Consensus       129 ~I~~fll~~i~~d~~~~~l~~kl~~  153 (178)
T PF12717_consen  129 KIYKFLLDFIDKDKQKESLVEKLCQ  153 (178)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            3445555666644333334443333

>KOG1060|consensus

Probab=98.32  E-value=0.00012  Score=71.90  Aligned_cols=277  Identities=15%  Similarity=0.141  Sum_probs=162.4

Q ss_pred             CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015          5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG   83 (318)
Q Consensus         5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~   83 (318)
                      ..+||..|..|..+.+.|+|+|+.+|-.|++.|+.|--..    ...-++-.+.++..|..+ ||+.+|.+++++=. ++
T Consensus       100 EeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld  174 (968)
T KOG1060|consen  100 EEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LD  174 (968)
T ss_pred             hcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CC
Confidence            3589999999999999999999999999999999983110    122345567788899998 99999999998854 23


Q ss_pred             cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-CCchhhhhhhhhhhhhcc-ccC
Q psy14015         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYP-RVT  161 (318)
Q Consensus        84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~-~~~  161 (318)
                      . +....+..++..|+.|..+.|-.+|+.++-.++..-=  +..+.-.-.+++++.| ++|.- ...+.+|-+.+. .+.
T Consensus       175 ~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerl--dLIHknyrklC~ll~dvdeWgQ-vvlI~mL~RYAR~~l~  250 (968)
T KOG1060|consen  175 P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERL--DLIHKNYRKLCRLLPDVDEWGQ-VVLINMLTRYARHQLP  250 (968)
T ss_pred             h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHH--HHhhHHHHHHHhhccchhhhhH-HHHHHHHHHHHHhcCC
Confidence            3 3344799999999999999999999988888764210  0111111122333333 23321 111111111100 000


Q ss_pred             -------------------------------cchHHHHHHHHHhhccCCCcccccch----hhcCc-cchHHHHHHHHHh
Q psy14015        162 -------------------------------AGVKAELRSHFRNLCQDDTPMQQGHV----WECGS-GVKAELRSHFRNL  205 (318)
Q Consensus       162 -------------------------------~~~~~~l~~~~~~l~~~~~~~vR~~v----~~~~~-~~~~~ll~~l~~l  205 (318)
                                                     +.--..+.+....|.....|.|=..|    +.+++ .....+..++..+
T Consensus       251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL  330 (968)
T KOG1060|consen  251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL  330 (968)
T ss_pred             CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH
Confidence                                           00011111111111111111110000    01111 1123345556666


Q ss_pred             hcCCCHHHHHHHHHhhHHHHHHh----c----------------------------hhhhHhhHHHHHHHhhcCCcHHHH
Q psy14015        206 CQDDTPMVRRAAAGKLGELAKVV----E----------------------------VDYLKTDIIPMFVNLAQDEQDSVR  253 (318)
Q Consensus       206 ~~D~~~~VR~~aa~~L~~l~~~~----~----------------------------~~~~~~~llp~l~~ll~D~~~~VR  253 (318)
                      +. ++.+|+.....++..++..-    .                            .+.-...+++-|....+++...+-
T Consensus       331 Lr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~fa  409 (968)
T KOG1060|consen  331 LR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFA  409 (968)
T ss_pred             Hh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHH
Confidence            64 55667777777777666421    0                            011235677778888888888888


Q ss_pred             HHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccccccc
Q psy14015        254 LLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFC  293 (318)
Q Consensus       254 ~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~  293 (318)
                      .+++.+|+.++..++.  ..+.-+..|+.+++.-+..|.|
T Consensus       410 a~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~  447 (968)
T KOG1060|consen  410 AAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVA  447 (968)
T ss_pred             HHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHH
Confidence            8899999999987765  2345567777888774444433

>KOG2956|consensus

Probab=98.31  E-value=2.9e-05  Score=72.10  Aligned_cols=202  Identities=18%  Similarity=0.252  Sum_probs=127.5

Q ss_pred             CCCCCch---HHHHHHHhc-CccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCC-hHH-HHHHHHHHHcc
Q psy14015          8 PDDSLYP---IAVLIDELK-NEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYD-EDE-VLLALAEQLGT   77 (318)
Q Consensus         8 ~~~~l~~---i~~l~~~l~-~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~   77 (318)
                      .++++..   ++.++..+. ++....|..++..|.++... |..    ....+++-.+.+.+.| .++ .|+-+.+.|.+
T Consensus       278 ~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e-~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~  356 (516)
T KOG2956|consen  278 TPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCE-GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLRE  356 (516)
T ss_pred             CCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence            3444444   566666665 44678899999999998644 322    2344666677788888 566 88999999998


Q ss_pred             cccCcCcc--c-chhccchHHhhhccCchh-HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhh
Q psy14015         78 FTPNVGGP--E-YVHCLLPPLESLATVEET-VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF  153 (318)
Q Consensus        78 l~~~~~~~--~-~~~~llp~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l  153 (318)
                      ++..-...  + ..-.+...|.. ..|.++ .+|.++-.++..++.+.+..-+.. +.|.+..  .|.  ..-..++..+
T Consensus       357 ml~~Q~~~l~DstE~ai~K~Lea-a~ds~~~v~~~Aeed~~~~las~~P~~~I~~-i~~~Ilt--~D~--~~~~~~iKm~  430 (516)
T KOG2956|consen  357 MLTNQPARLFDSTEIAICKVLEA-AKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-ISPLILT--ADE--PRAVAVIKML  430 (516)
T ss_pred             HHHhchHhhhchHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHhhCchhHHHH-HhhHHhc--Ccc--hHHHHHHHHH
Confidence            87632111  1 11123333333 355554 556666666666666666544443 6666654  222  2223444566


Q ss_pred             hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh
Q psy14015        154 SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL  233 (318)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~  233 (318)
                      .+++.+++.+   ++..                       .-..+.|.+++..+..+..||+.+..||..+...+|.   
T Consensus       431 Tkl~e~l~~E---eL~~-----------------------ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~---  481 (516)
T KOG2956|consen  431 TKLFERLSAE---ELLN-----------------------LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM---  481 (516)
T ss_pred             HHHHhhcCHH---HHHH-----------------------hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH---
Confidence            6666666532   1111                       2256789999999999999999999999999999996   


Q ss_pred             HhhHHHHHHHhhc
Q psy14015        234 KTDIIPMFVNLAQ  246 (318)
Q Consensus       234 ~~~llp~l~~ll~  246 (318)
                       +.+.|.|.+|-.
T Consensus       482 -~~mePhL~~Lt~  493 (516)
T KOG2956|consen  482 -EEMEPHLEQLTS  493 (516)
T ss_pred             -HhhhhHhhhccH
Confidence             347777777643

>KOG2259|consensus

Probab=98.29  E-value=3.7e-05  Score=74.08  Aligned_cols=224  Identities=13%  Similarity=0.130  Sum_probs=135.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCc-Ccc-------
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNV-GGP-------   85 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~-~~~-------   85 (318)
                      +.-++....+.+..+|-.+++.|-.+..  |-. ..+.+..-..+++.|+++ ||++|.+.+.-++... +..       
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSE--GFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhcc--ccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            3337777889999999999999877764  322 233455555678899888 9999988776665433 110       


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC-----------------Cch-hhh
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-----------------WFT-SRT  147 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~-----------------~~~-vR~  147 (318)
                      ......+.-+=....|-+..||..|.+.++.+-+. +.+.+.+++-   +++..+.                 .|. -|.
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLd---KKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLD---KKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHH---HHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            11111222223335788899999999999988654 2332222221   2222211                 010 000


Q ss_pred             h-----------------hhhhhhhhccccCcc---hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        148 S-----------------ACGLFSVCYPRVTAG---VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       148 ~-----------------a~~~l~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      .                 .-+..|.++..+.++   +|......+..|+..            .+.+-..-+..+..+++
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s------------sP~FA~~aldfLvDMfN  420 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS------------SPGFAVRALDFLVDMFN  420 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC------------CCCcHHHHHHHHHHHhc
Confidence            0                 000011122222221   222222222222221            12355677899999999


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC  260 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l  260 (318)
                      |+-..||..|+.+|..++..+.   +.++.++.+...+.|.+..||.++-+-+
T Consensus       421 DE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL  470 (823)
T KOG2259|consen  421 DEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELL  470 (823)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999998743   3467899999999999999999875543

>KOG0212|consensus

Probab=98.27  E-value=2e-05  Score=74.57  Aligned_cols=252  Identities=15%  Similarity=0.137  Sum_probs=160.0

Q ss_pred             HHHHhcCccHHHHHHHHHhHHHHHHhh---ChHhHhhchhh-hhhhhcCChHH-HHHHHHHHHcccccCcCccc--chhc
Q psy14015         18 LIDELKNEDVQLRLNSIKKLSTIALAL---GQERTRGELIP-FLTETIYDEDE-VLLALAEQLGTFTPNVGGPE--YVHC   90 (318)
Q Consensus        18 l~~~l~~~~~~~R~~~~~~L~~ia~~l---g~~~~~~~llp-~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~--~~~~   90 (318)
                      ....+.|.-++.|..++..+-.+-+.+   |.......++. ....++..... -|++..-.+...+-.+|.+.  +.+.
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~   84 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK   84 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence            445677777888888888877775542   22222233333 22233333333 55554444444433344332  3455


Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l  168 (318)
                      ++|-....++|.+..||-.|.+++..++.....+.  +.+.+...++++..|....||.+| +++..++.....+     
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte-----  158 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTE-----  158 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccc-----
Confidence            66666677789999999999999999998765543  334577777888888888887554 3333222111100     


Q ss_pred             HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhc
Q psy14015        169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQ  246 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~  246 (318)
                                ..          ....-+.++|.+..-..+-++..|.....-+..+-..-+-+-  ...++++-+.+++.
T Consensus       159 ----------~~----------~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls  218 (675)
T KOG0212|consen  159 ----------SA----------STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS  218 (675)
T ss_pred             ----------cc----------cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc
Confidence                      00          013446788888888888999999998888776655433332  25679999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhhCChh--h-hhHhhHHHHHHhccccccccccCCCCCCchhhHH
Q psy14015        247 DEQDSVRLLAVEACVSIASLLSQS--D-VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHV  305 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~l~~~--~-~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~  305 (318)
                      |++.+||..+=.+++++..-+..+  . .....++.+.+=+.-          .+|..+..+
T Consensus       219 D~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s----------s~~~iq~~a  270 (675)
T KOG0212|consen  219 DSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS----------SEPEIQLKA  270 (675)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC----------CcHHHHHHH
Confidence            999999998888888888655322  2 234466766666665          666666444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.25  E-value=7.6e-05  Score=70.95  Aligned_cols=269  Identities=13%  Similarity=0.051  Sum_probs=171.0

Q ss_pred             HHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH--HHHHHHHHHcccccCcCcccchh----ccc
Q psy14015         19 IDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE--VLLALAEQLGTFTPNVGGPEYVH----CLL   92 (318)
Q Consensus        19 ~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~--VR~~aa~~L~~l~~~~~~~~~~~----~ll   92 (318)
                      +..|++..+..-..+.+.++.||..-=|...++.++..+....-|+++  +++.....++..+....++...+    .+.
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~  179 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF  179 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence            467889999988899999999987743444677788788777766554  88888888888876554422221    133


Q ss_pred             hHHhhhcc-CchhHHHHHHHHHHHHHHhh----CChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc----Ccc
Q psy14015         93 PPLESLAT-VEETVVRDKAVESLRLISAQ----HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV----TAG  163 (318)
Q Consensus        93 p~l~~l~~-d~~~~VR~~a~~~l~~l~~~----~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~----~~~  163 (318)
                      -+...-.+ .++..||-+|+.+|..=+..    +..|.-.++++..+++.-++++..+...|-+.|.++..--    ..-
T Consensus       180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y  259 (858)
T COG5215         180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY  259 (858)
T ss_pred             HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444433 45789999999998873332    3334445567777777777777777777766666543211    100


Q ss_pred             hHHHHHHHHHhhccCCCcccccc---hh---------------hcC----c------cchHHHHHHHHHhhc-------C
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGH---VW---------------ECG----S------GVKAELRSHFRNLCQ-------D  208 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~---v~---------------~~~----~------~~~~~ll~~l~~l~~-------D  208 (318)
                      ..+.++......-+....+|.-+   .|               .+.    +      ..-+.++|.++++++       +
T Consensus       260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~  339 (858)
T COG5215         260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG  339 (858)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            11111111111111111111100   00               000    0      123568888888874       3


Q ss_pred             CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhcc
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSV  285 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~  285 (318)
                      ++|.+-++|..+|--+++..|... .+-++.++++-++.++|.-|.+++-+++.+..-=.+..   .....+|.+...-.
T Consensus       340 DdWn~smaA~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~  418 (858)
T COG5215         340 DDWNPSMAASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS  418 (858)
T ss_pred             cccchhhhHHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence            579999999999999999988654 45588899999999999999999999888775322221   12347788888888


Q ss_pred             ccc
Q psy14015        286 QIV  288 (318)
Q Consensus       286 D~~  288 (318)
                      |+.
T Consensus       419 D~~  421 (858)
T COG5215         419 DSC  421 (858)
T ss_pred             cce
Confidence            833

>KOG1060|consensus

Probab=98.25  E-value=9.2e-05  Score=72.67  Aligned_cols=269  Identities=15%  Similarity=0.181  Sum_probs=171.4

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChHHHHHHHHHHHcccccCcCcccchhccchH
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPP   94 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~   94 (318)
                      ..+...|++......+.|++++-.+-.. |.+  ...+.|.+.+.. ..+.||++-+--.|-++|+.  .++..=--+..
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~-G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt  112 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAK-GKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT  112 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhc-CCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence            3455667777777778888887665432 443  567888887654 55667999999888888862  12221112345


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHh
Q psy14015         95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN  174 (318)
Q Consensus        95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~  174 (318)
                      ++.-++|++..+|..|+..+..|=-.    -+..+++-.+++...|++..||..||..++|++.- ..+.+.++.+.+..
T Consensus       113 fQk~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~~  187 (968)
T KOG1060|consen  113 FQKALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVIKK  187 (968)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHHHH
Confidence            88889999999999999888776211    12233444567788999999999999999998853 44455688888899


Q ss_pred             hccCCCcccccc-hhhcCc---cchHHHHHHHHHhhc---C-CCHHHHHHHHHhhHHHHHH-h-----------------
Q psy14015        175 LCQDDTPMQQGH-VWECGS---GVKAELRSHFRNLCQ---D-DTPMVRRAAAGKLGELAKV-V-----------------  228 (318)
Q Consensus       175 l~~~~~~~vR~~-v~~~~~---~~~~~ll~~l~~l~~---D-~~~~VR~~aa~~L~~l~~~-~-----------------  228 (318)
                      |..|.+|.|-+. |....+   +.-+-+.+.+.++|+   | +.|. .-.++..|...|.. +                 
T Consensus       188 LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~  266 (968)
T KOG1060|consen  188 LLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSC  266 (968)
T ss_pred             HhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh-HHHHHHHHHHHHHhcCCCccccccccccCcccc
Confidence            999988876553 222211   122233444555543   2 2232 11223333333321 0                 


Q ss_pred             ----------ch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCC
Q psy14015        229 ----------EV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPN  295 (318)
Q Consensus       229 ----------~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~  295 (318)
                                ++   +.....++...+.++...++.|=.+++.+.-.++.    ......+...|+++|..         
T Consensus       267 ~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP----~~~~~~i~kaLvrLLrs---------  333 (968)
T KOG1060|consen  267 NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP----KNQVTKIAKALVRLLRS---------  333 (968)
T ss_pred             cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC----HHHHHHHHHHHHHHHhc---------
Confidence                      11   22234577777888888888888888777666663    22344567778888884         


Q ss_pred             CCCCchhhHHhhhhh
Q psy14015        296 NEFHPLELHVISATT  310 (318)
Q Consensus       296 ~~~~~Vr~~~i~~~~  310 (318)
                        .++|+.-+..+++
T Consensus       334 --~~~vqyvvL~nIa  346 (968)
T KOG1060|consen  334 --NREVQYVVLQNIA  346 (968)
T ss_pred             --CCcchhhhHHHHH
Confidence              7777777666654

>KOG1820|consensus

Probab=98.25  E-value=3.5e-05  Score=77.71  Aligned_cols=188  Identities=16%  Similarity=0.148  Sum_probs=143.7

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhC---hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--cchh
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALG---QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--EYVH   89 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg---~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--~~~~   89 (318)
                      ..+...+-|++|+.|.++++.+..+...-+   .+.....+..++.-...|.+- |-..++..|..++..++..  .+..
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~  335 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK  335 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            456678889999999999999999975533   222334555666666778776 7788888888888776643  3455


Q ss_pred             ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR  169 (318)
Q Consensus        90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~  169 (318)
                      .+.|.+..-+.+.-..+|..++.++-.+++..+..    .+.+.+..++++.++..|..+..++...+...+...     
T Consensus       336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~-----  406 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT-----  406 (815)
T ss_pred             hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC-----
Confidence            68888888889999999999999999999865544    366778888899999999887777765544433110     


Q ss_pred             HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh
Q psy14015        170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY  232 (318)
Q Consensus       170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~  232 (318)
                            +.              ....+.+.|.+....+|.+..||.++..+++.+...+|.+-
T Consensus       407 ------~~--------------~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~  449 (815)
T KOG1820|consen  407 ------VE--------------KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV  449 (815)
T ss_pred             ------cc--------------hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence                  00              13457889999999999999999999999999999999754

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.25  E-value=6.1e-06  Score=63.52  Aligned_cols=110  Identities=21%  Similarity=0.106  Sum_probs=82.9

Q ss_pred             hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015        129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD  208 (318)
Q Consensus       129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D  208 (318)
                      .++|.+.+++.++++.+|..++..++.+...... ....+                         .....+|.+.++++|
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~-------------------------~~~~~i~~l~~~l~~   60 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNND-NIQAV-------------------------VEAGGLPALVQLLKS   60 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-HHHHH-------------------------HHCCChHHHHHHHhC
Confidence            4677777777888888888888888776544221 11111                         123568999999999


Q ss_pred             CCHHHHHHHHHhhHHHHHHhch--hh-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEV--DY-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~--~~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      ++++||..++.+|+.++...+.  +. ....++|.+.+++++++..+|..++.++..++
T Consensus        61 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999975422  12 22348999999999999999999999988876

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.22  E-value=2.1e-06  Score=49.95  Aligned_cols=29  Identities=41%  Similarity=0.518  Sum_probs=18.5

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHH
Q psy14015        198 LRSHFRNLCQDDTPMVRRAAAGKLGELAK  226 (318)
Q Consensus       198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~  226 (318)
                      ++|.+.++++|++|+||.+|+.+|+.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            35666666666666666666666666665

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4224|consensus

Probab=98.21  E-value=2e-05  Score=71.08  Aligned_cols=223  Identities=21%  Similarity=0.214  Sum_probs=142.3

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHh------hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--c
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALA------LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--P   85 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~------lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~   85 (318)
                      ++.+...+++.+..+|.-+...++-|+-.      +.+  ....++|.+..+.+|.+. |+..+..+|..++..-..  +
T Consensus       210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq--aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~e  287 (550)
T KOG4224|consen  210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ--AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQRE  287 (550)
T ss_pred             chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh--cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhH
Confidence            56778899999999999999999888621      211  234599999999999888 999999999999763211  1


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC-hhHHhh--hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS-PHDLEA--HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~--~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .....-+|.+..|+.|+.--.-.+.+.++..++-+.. +..+.+  ++-|++.=|-..++..++..|...|..+.... +
T Consensus       288 iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e  366 (550)
T KOG4224|consen  288 IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-E  366 (550)
T ss_pred             HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-h
Confidence            2223367899999988753333445556655654432 222222  35566655555566666666666655443211 1


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhh-HhhHHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYL-KTDIIPM  240 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~-~~~llp~  240 (318)
                      ..++.+                         .....+|.+..++-|..-.||.-+..++..++-.-.. +.+ ..-++|+
T Consensus       367 ~n~~~i-------------------------~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~i  421 (550)
T KOG4224|consen  367 HNVSVI-------------------------RESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPI  421 (550)
T ss_pred             hhhHHH-------------------------hhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcce
Confidence            111111                         2234567777777787777887777777777643221 111 2237777


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        241 FVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       241 l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                      +..+..|.+..||..++.++.+++.
T Consensus       422 LIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  422 LIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             eecccCccchhhcccHHHHHHhhhh
Confidence            7777788888888888888877775

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.21  E-value=8e-05  Score=62.31  Aligned_cols=112  Identities=19%  Similarity=0.185  Sum_probs=88.8

Q ss_pred             cHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchh
Q psy14015         26 DVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEET  104 (318)
Q Consensus        26 ~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~  104 (318)
                      ++.+|..++..++.++...+.  ..+..+|.+...+.|+++ ||+.+...|.++... |.-.....++..+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            578999999999999877653  456678999999999888 999999999998642 2222334455666677899999


Q ss_pred             HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC
Q psy14015        105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG  140 (318)
Q Consensus       105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d  140 (318)
                      .||..|...+..+.....++.+.+.+.+.+..+.+.
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~  113 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC  113 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence            999999999999999877777777777777766553

>KOG0567|consensus

Probab=98.18  E-value=2.9e-05  Score=67.24  Aligned_cols=243  Identities=20%  Similarity=0.217  Sum_probs=152.8

Q ss_pred             HHHHHHHhc--CccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015         15 IAVLIDELK--NEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        15 i~~l~~~l~--~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      +..+.+.|.  +...+.|..+.-+|..++   |+. .    +..+.+...|+++ -...++-.|++...        ..-
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~---~~~-~----i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~A   68 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLL---GPA-A----IKAITKAFIDDSALLKHELAYVLGQMQD--------EDA   68 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccC---ChH-H----HHHHHHhcccchhhhccchhhhhhhhcc--------chh
Confidence            344444453  344556777777777653   333 1    5566666656666 88888888887642        234


Q ss_pred             chHHhhhccCc--hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc----------
Q psy14015         92 LPPLESLATVE--ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR----------  159 (318)
Q Consensus        92 lp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~----------  159 (318)
                      +|.+..-+.|+  ++.||..|.++|..++..        ..++++.++.+|+-..+|.++-..+..+-+.          
T Consensus        69 v~~l~~vl~desq~pmvRhEAaealga~~~~--------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~  140 (289)
T KOG0567|consen   69 VPVLVEVLLDESQEPMVRHEAAEALGAIGDP--------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSS  140 (289)
T ss_pred             hHHHHHHhcccccchHHHHHHHHHHHhhcch--------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccC
Confidence            56666665555  589999999999999832        2777788888888888888653333322110          


Q ss_pred             --cC--cc---hHHHHHHHHHhhccCCC-ccccc--chhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015        160 --VT--AG---VKAELRSHFRNLCQDDT-PMQQG--HVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE  229 (318)
Q Consensus       160 --~~--~~---~~~~l~~~~~~l~~~~~-~~vR~--~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~  229 (318)
                        .+  +.   ..+.+.+ ++....|.+ |...+  ....+.....+.-+..+.+-+.|++...|..++..||++-.   
T Consensus       141 p~~SvdPa~p~~~ssv~~-lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s---  216 (289)
T KOG0567|consen  141 PYISVDPAPPANLSSVHE-LRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS---  216 (289)
T ss_pred             ccccCCCCCccccccHHH-HHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc---
Confidence              00  00   0000000 000000000 00000  01111112346778888888889999999999999998864   


Q ss_pred             hhhhHhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        230 VDYLKTDIIPMFVNLAQDE--QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       230 ~~~~~~~llp~l~~ll~D~--~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                           ..-+|.+.+.+.|.  ++.||--|+++|+.++.        +.-++.|.+.++|          +.+-||...+.
T Consensus       217 -----~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D----------~~~vv~esc~v  273 (289)
T KOG0567|consen  217 -----PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGD----------EERVVRESCEV  273 (289)
T ss_pred             -----hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCC----------cHHHHHHHHHH
Confidence                 34678888777766  66899999999999882        3457889999999          99999887764


Q ss_pred             h
Q psy14015        308 A  308 (318)
Q Consensus       308 ~  308 (318)
                      .
T Consensus       274 a  274 (289)
T KOG0567|consen  274 A  274 (289)
T ss_pred             H
Confidence            3

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.17  E-value=2.5e-06  Score=56.80  Aligned_cols=53  Identities=40%  Similarity=0.476  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015        211 PMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       211 ~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l  263 (318)
                      |.||..++.+||.+++..+.  +.....++|.+..+++|++..||.+++.+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            78999999999987754332  234678999999999999999999999998864

...

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.16  E-value=9.5e-06  Score=72.56  Aligned_cols=273  Identities=13%  Similarity=0.134  Sum_probs=172.5

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhh--ChHh--HhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcc--
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALAL--GQER--TRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGP--   85 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~l--g~~~--~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~--   85 (318)
                      .++.+..+|.|++.+....+.-.+.++.+.-  .|-+  ...-++|-+.+++.. +.. ..-.++.+|..+++--..+  
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            3677888899999999888888888876441  1111  233467777777754 334 7789999999998621111  


Q ss_pred             -cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHhh-hHHHHHHHhhcCCCc--hhhhhhhhhhhhhccc
Q psy14015         86 -EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDLEA-HFVPLVQRLASGDWF--TSRTSACGLFSVCYPR  159 (318)
Q Consensus        86 -~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~-~ilp~~~~l~~d~~~--~vR~~a~~~l~~~~~~  159 (318)
                       .....-+|++.+|+.+.++.||+.++-+|+.++.-.+.  +.+.+ -.+.-+..++.+...  .+-.++.+.|+.++..
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence             11233679999999999999999999999999876543  11111 123333344443322  3334666777777655


Q ss_pred             cC----cchHHHHHHHHHhhccCCCccccc-chhhcC---c--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHH
Q psy14015        160 VT----AGVKAELRSHFRNLCQDDTPMQQG-HVWECG---S--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGE  223 (318)
Q Consensus       160 ~~----~~~~~~l~~~~~~l~~~~~~~vR~-~v~~~~---~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~  223 (318)
                      -.    |..-+....++-+|.-..+++|-- .+|.+.   +        ....-..+.+.+++.+++..|..-+....|.
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN  311 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN  311 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence            43    233333334455555555554332 223211   0        0112234668888889999988888888887


Q ss_pred             HHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccc
Q psy14015        224 LAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       224 l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~  288 (318)
                      +.-  |.+.     +.--.+++|..+++.|...+|+-++..|.++...-...   .....++|.|..++.-..
T Consensus       312 IVT--G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae  382 (526)
T COG5064         312 IVT--GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE  382 (526)
T ss_pred             eee--cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH
Confidence            764  3221     11237899999999999999999999998876433221   123468999999887655

>KOG1820|consensus

Probab=98.14  E-value=9.8e-05  Score=74.54  Aligned_cols=200  Identities=13%  Similarity=0.086  Sum_probs=153.0

Q ss_pred             hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC---cccchhccchHHhhhccCchhHHHHHHHHHHHHHHh
Q psy14015         44 LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG---GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISA  119 (318)
Q Consensus        44 lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~---~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~  119 (318)
                      +.+.+....+-|.+..-+.+..| -|..+++.+....+.-+   .+.+...+...+.....|.+-.|-..|+.+|..++.
T Consensus       245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~  324 (815)
T KOG1820|consen  245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK  324 (815)
T ss_pred             CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence            44556777888888888899999 99999999888776444   123334455666777899999999999999999999


Q ss_pred             hCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHH
Q psy14015        120 QHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAE  197 (318)
Q Consensus       120 ~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~  197 (318)
                      .++...  +...+.|.+..-+++....+|-.+...+-.++.                    ..             .-..
T Consensus       325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--------------------s~-------------~l~~  371 (815)
T KOG1820|consen  325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN--------------------ST-------------PLSK  371 (815)
T ss_pred             hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--------------------cc-------------cHHH
Confidence            887742  333466777766777655666555444332221                    11             1256


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch----hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015        198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  273 (318)
Q Consensus       198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~----~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~  273 (318)
                      +.+....++.+.++.+|..+..-|.......++    ......+.|.+....+|.+..||.++.++++.+...+|...+.
T Consensus       372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~  451 (815)
T KOG1820|consen  372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK  451 (815)
T ss_pred             HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            789999999999999999999999999988872    2346779999999999999999999999999999999998765


Q ss_pred             Hhh
Q psy14015        274 QLV  276 (318)
Q Consensus       274 ~~l  276 (318)
                      .+|
T Consensus       452 k~L  454 (815)
T KOG1820|consen  452 KLL  454 (815)
T ss_pred             HHH
Confidence            543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.11  E-value=6.1e-06  Score=48.01  Aligned_cols=30  Identities=30%  Similarity=0.451  Sum_probs=27.2

Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        237 IIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      ++|.+.++++||+|.||.+++.+++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.00016  Score=68.95  Aligned_cols=243  Identities=16%  Similarity=0.116  Sum_probs=158.5

Q ss_pred             CCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015         11 SLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV   88 (318)
Q Consensus        11 ~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~   88 (318)
                      -+.+ +..+..-|++.....|..+++.|.+++-.- |+ .....-|-+..++.|.+- +---|...|-+-    |.++..
T Consensus       300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~-P~-kv~vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~i  373 (898)
T COG5240         300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY-PQ-KVSVCNKEVESLISDENRTISTYAITTLLKT----GTEETI  373 (898)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC-Cc-eeeecChhHHHHhhcccccchHHHHHHHHHc----CchhhH
Confidence            3444 666777888999999999999999998553 33 234556777888888665 443344333322    456677


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAE  167 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~  167 (318)
                      ..++..+-.+..|-.+.-+..+++++..++..++.++..  ++..+.. |++...+.-+..+++.+..++...++. +..
T Consensus       374 drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s--~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s-kEr  450 (898)
T COG5240         374 DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS--YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS-KER  450 (898)
T ss_pred             HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH-HHH
Confidence            778888888888888888888899999998888775422  3333322 334445677777777777766655432 111


Q ss_pred             HHHHHHhhccCCC---cccccchhhcCc------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHH
Q psy14015        168 LRSHFRNLCQDDT---PMQQGHVWECGS------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII  238 (318)
Q Consensus       168 l~~~~~~l~~~~~---~~vR~~v~~~~~------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~ll  238 (318)
                      +.+.+.....|..   ..||- ...+|+      .-..++..++..+. =++..||.+|..+|.+++-+.......+.+.
T Consensus       451 aLe~LC~fIEDcey~~I~vrI-L~iLG~EgP~a~~P~~yvrhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~  528 (898)
T COG5240         451 ALEVLCTFIEDCEYHQITVRI-LGILGREGPRAKTPGKYVRHIYNRLI-LENNIVRSAAVQALSKFALNISDVVSPQSVE  528 (898)
T ss_pred             HHHHHHHHHhhcchhHHHHHH-HHHhcccCCCCCCcchHHHHHHHHHH-HhhhHHHHHHHHHHHHhccCccccccHHHHH
Confidence            1121111111111   11111 001111      11244555555544 3788999999999999998877666677899


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .++++.++|.+..||..|..++..+-
T Consensus       529 ~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         529 NALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            99999999999999999887776554

>KOG1061|consensus

Probab=98.07  E-value=4.3e-05  Score=74.88  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=92.6

Q ss_pred             CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015          5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG   83 (318)
Q Consensus         5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~   83 (318)
                      -++|++++.-+..+++.-++++|..|-.|++..+.+    +-....+++..=+.+.+.|+++ ||+.++-...++-..-.
T Consensus        78 ~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~  153 (734)
T KOG1061|consen   78 KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP  153 (734)
T ss_pred             ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence            368999999999999999999999999999998886    3233455566666678888888 99999887776644333


Q ss_pred             cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh
Q psy14015         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP  123 (318)
Q Consensus        84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~  123 (318)
                      .......+++.+..++.|.++.|-..|+.++..+.+.-+.
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence            3345566899999999999999999999999999987653

>KOG2062|consensus

Probab=98.06  E-value=0.00015  Score=70.84  Aligned_cols=251  Identities=19%  Similarity=0.168  Sum_probs=139.2

Q ss_pred             HHHHHHhcCc-cHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHH-HHHHHHHcccccCcCcccchhccch
Q psy14015         16 AVLIDELKNE-DVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        16 ~~l~~~l~~~-~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR-~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      .-+...|++. +..+|-.++-.|+-.+  +|..  ..++...+.+++..++.|- .++.-.++-+-  +|.  ..+..+.
T Consensus       416 ~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~m--lGt--~~~eaie  487 (929)
T KOG2062|consen  416 DYLLQQLKTAENEVVRHGACLGLGLAG--MGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLM--LGT--ANQEAIE  487 (929)
T ss_pred             HHHHHHHHhccchhhhhhhhhhccchh--cccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHh--hCc--CcHHHHH
Confidence            3445556533 3456666666666543  3432  2455666666666555533 33333333221  111  1112222


Q ss_pred             HHhhhccCch--hHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015         94 PLESLATVEE--TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (318)
Q Consensus        94 ~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~  171 (318)
                      -+.+...+++  ...|.-++..  .+.-+...+    ..-|++.+|+.|+++..|++....++..+-.-+.  -+.+...
T Consensus       488 dm~~Ya~ETQHeki~RGl~vGi--aL~~ygrqe----~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn--nkair~l  559 (929)
T KOG2062|consen  488 DMLTYAQETQHEKIIRGLAVGI--ALVVYGRQE----DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN--NKAIRRL  559 (929)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhH--HHHHhhhhh----hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc--hhhHHHh
Confidence            2333344443  3334444322  333333222    3667788899999888998775555433322211  1111111


Q ss_pred             HHhhccCCCcccccc-hhhcCc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015        172 FRNLCQDDTPMQQGH-VWECGS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD  247 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~-v~~~~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D  247 (318)
                      +.--.+|.+..||+. |..+|=   ...+.+...+.-|...-|++||..+|.+||-.|..-|.    .+.+..+..+.+|
T Consensus       560 Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D  635 (929)
T KOG2062|consen  560 LHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSD  635 (929)
T ss_pred             hcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcC
Confidence            222245666777774 444442   11233344444455567899999999999988876665    4578889999999


Q ss_pred             CcHHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhccc
Q psy14015        248 EQDSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSVQ  286 (318)
Q Consensus       248 ~~~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~D  286 (318)
                      |..-||+.|+-+++-+.-...+..+  ...+...+.+...|
T Consensus       636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d  676 (929)
T KOG2062|consen  636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND  676 (929)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence            9999999999888777654444322  12355666777777

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.06  E-value=2.3e-05  Score=60.27  Aligned_cols=101  Identities=19%  Similarity=0.090  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---chhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--  270 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--  270 (318)
                      ..+++.+.++++|.++.+|..++.+++.++...   ....+...++|.+..+++|+++.||..++.++.+++...+..  
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            447899999999999999999999999999642   122334479999999999999999999999999999765331  


Q ss_pred             hhh-HhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        271 DVE-QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       271 ~~~-~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ... .-++|.+..++.+          .+..||..+.
T Consensus        86 ~~~~~g~l~~l~~~l~~----------~~~~~~~~a~  112 (120)
T cd00020          86 IVLEAGGVPKLVNLLDS----------SNEDIQKNAT  112 (120)
T ss_pred             HHHHCCChHHHHHHHhc----------CCHHHHHHHH
Confidence            122 3489999999999          7777776665

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1059|consensus

Probab=98.05  E-value=9.7e-05  Score=71.88  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015         49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE  127 (318)
Q Consensus        49 ~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~  127 (318)
                      ..-.|-+-+-.++....+ ||+-+.-.|.++.  +..++....-+|-|.+-+.|+++.|..+|+..+++++..-+.. +.
T Consensus       141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvF--LkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-yL  217 (877)
T KOG1059|consen  141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVF--LKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-YL  217 (877)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc-cc
Confidence            344566666678888888 9988888777663  3456666777788888899999999999999999999876543 22


Q ss_pred             hhHHHHHHHhhcC--CCch
Q psy14015        128 AHFVPLVQRLASG--DWFT  144 (318)
Q Consensus       128 ~~ilp~~~~l~~d--~~~~  144 (318)
                       .+-|.+-+++.+  .+|.
T Consensus       218 -~LAP~ffkllttSsNNWm  235 (877)
T KOG1059|consen  218 -QLAPLFYKLLVTSSNNWV  235 (877)
T ss_pred             -cccHHHHHHHhccCCCee
Confidence             266777776654  3463

>KOG2032|consensus

Probab=97.97  E-value=0.00026  Score=66.36  Aligned_cols=136  Identities=17%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             cCccHHHHHHHHHhHHHHHHhhChHhHh-----hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc---cchhccch
Q psy14015         23 KNEDVQLRLNSIKKLSTIALALGQERTR-----GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP---EYVHCLLP   93 (318)
Q Consensus        23 ~~~~~~~R~~~~~~L~~ia~~lg~~~~~-----~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~---~~~~~llp   93 (318)
                      .++-+..|..-+..+.++.   ++....     ..++-.+..-..|++. +|.-+++.|++.+......   .....+-.
T Consensus       227 ts~~~~~ritd~Af~ael~---~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~lda  303 (533)
T KOG2032|consen  227 TSEKENGRITDIAFFAELK---RPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDA  303 (533)
T ss_pred             chhcccchHHHHHHHHHHh---CcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHH
Confidence            3444566777776666663   222111     1222233344567766 9999999999998753321   12233445


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH---hhcCCCchhhhhhhhhhhhhccccC
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR---LASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~---l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      ++..|..+.+.+|--.++.+|..+.+.....++..+++++..+   +..|....+|.+|..++|.+....+
T Consensus       304 ii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g  374 (533)
T KOG2032|consen  304 IIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG  374 (533)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence            6788888888999999999999999998888888887776654   6777888999999999886654444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.96  E-value=0.00034  Score=66.70  Aligned_cols=223  Identities=19%  Similarity=0.152  Sum_probs=141.4

Q ss_pred             HHHHHHHhcCc-cHHHHHHHHHhHHHHHHhh----ChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC---cc
Q psy14015         15 IAVLIDELKNE-DVQLRLNSIKKLSTIALAL----GQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG---GP   85 (318)
Q Consensus        15 i~~l~~~l~~~-~~~~R~~~~~~L~~ia~~l----g~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~---~~   85 (318)
                      ++..+..++.+ +.-+|+.+.+.|..-+.++    -.|..+++++....+.-+-+++ +..++---|.++-..-.   ..
T Consensus       179 ~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~  258 (858)
T COG5215         179 FAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS  258 (858)
T ss_pred             HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566544 4569999999998865443    3344566666666655555554 77666555544432100   11


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhh----------CCh--h-------HHhhhHHHHHHHhhc-------
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ----------HSP--H-------DLEAHFVPLVQRLAS-------  139 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~----------~~~--~-------~~~~~ilp~~~~l~~-------  139 (318)
                      ...+.+..+.-+..+++++.|...|++--..+++.          +++  .       .....++|-+.+|+.       
T Consensus       259 ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~  338 (858)
T COG5215         259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY  338 (858)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            22233445556667899999998888876555542          110  0       011236777776653       


Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG  219 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~  219 (318)
                      ++.|.+-++|...|                +.|.++++|-              .-..++....+-.+.++|.-|.+++.
T Consensus       339 ~DdWn~smaA~sCL----------------qlfaq~~gd~--------------i~~pVl~FvEqni~~~~w~nreaavm  388 (858)
T COG5215         339 GDDWNPSMAASSCL----------------QLFAQLKGDK--------------IMRPVLGFVEQNIRSESWANREAAVM  388 (858)
T ss_pred             ccccchhhhHHHHH----------------HHHHHHhhhH--------------hHHHHHHHHHHhccCchhhhHHHHHH
Confidence            24576666654433                3455655543              22334555566678999999999999


Q ss_pred             hhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        220 KLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       220 ~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      +||.+...-...   .+....+|.+.++..|+.-+|...++.+++.++..+
T Consensus       389 AfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v  439 (858)
T COG5215         389 AFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV  439 (858)
T ss_pred             HhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence            999988632211   345678999999999999999999999999998655

>KOG4653|consensus

Probab=97.95  E-value=0.00023  Score=70.61  Aligned_cols=210  Identities=14%  Similarity=0.087  Sum_probs=141.1

Q ss_pred             hhhcCChHH-HHHHHHHHHcccccCcC--cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHH
Q psy14015         58 TETIYDEDE-VLLALAEQLGTFTPNVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLV  134 (318)
Q Consensus        58 ~~l~~D~~~-VR~~aa~~L~~l~~~~~--~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~  134 (318)
                      ...++|+.. +|..+...|.++.+.=.  .-...+.++.+....++|++..|--.|+..+..+++..++     .++|.+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il~dL  807 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DILPDL  807 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhHHHH
Confidence            345566665 99999999998876211  1223466888999999999999999999988888877544     366666


Q ss_pred             HH-hhcCC---CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC
Q psy14015        135 QR-LASGD---WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT  210 (318)
Q Consensus       135 ~~-l~~d~---~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~  210 (318)
                      .+ +.+..   ....|.-.-+.+.+++.+.++-+.                           ...+-++..|+....|++
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~---------------------------~y~~~Li~tfl~gvrepd  860 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF---------------------------KYKAVLINTFLSGVREPD  860 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHH---------------------------HHHHHHHHHHHHhcCCch
Confidence            55 33221   123343333444444433332111                           133567889999999999


Q ss_pred             HHHHHHHHHhhHHHHHHhc---hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccc
Q psy14015        211 PMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQI  287 (318)
Q Consensus       211 ~~VR~~aa~~L~~l~~~~~---~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~  287 (318)
                      .+-|..+..+||.+++...   .+++.+.+--++.-.-.|.+.-||++|+..+..+....|     ..++|++...+.|.
T Consensus       861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg-----~dlLpilr~~l~Dl  935 (982)
T KOG4653|consen  861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG-----EDLLPILRLLLIDL  935 (982)
T ss_pred             HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc-----hhhHHHHHHHHHHH
Confidence            9999999999999998653   566655554455555679999999999999999988776     45778777777775


Q ss_pred             cc---ccccCCCCCCchhhHH
Q psy14015        288 VD---HKFCPNNEFHPLELHV  305 (318)
Q Consensus       288 ~~---~~~~~~~~~~~Vr~~~  305 (318)
                      ..   +..|+-. +..+|+.+
T Consensus       936 ~~tl~~~vr~~~-dd~~klha  955 (982)
T KOG4653|consen  936 DETLLSYVRQHD-DDGLKLHA  955 (982)
T ss_pred             HHHHHHHHhcCc-hhHHHHHH
Confidence            52   3344322 33345444

>KOG1062|consensus

Probab=97.95  E-value=0.00043  Score=68.24  Aligned_cols=118  Identities=15%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchH
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPP   94 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~   94 (318)
                      ..+...|++.+-.+=-.|...|+.+   +++| +...|.|-+.++++..++ ||+-|+-...++..  ..++..+.+++-
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i---~s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f~~~  183 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNI---CSPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHFVIA  183 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhcc---CCHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHhhHH
Confidence            3455778888876644444444443   5666 678899999999999888 99998888887765  345667788888


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHhhCCh-----hHHhhhHHHHHHHhhc
Q psy14015         95 LESLATVEETVVRDKAVESLRLISAQHSP-----HDLEAHFVPLVQRLAS  139 (318)
Q Consensus        95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-----~~~~~~ilp~~~~l~~  139 (318)
                      ...++.+.+..|=.+++..+..+++..+.     .+....++-+++++.+
T Consensus       184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~  233 (866)
T KOG1062|consen  184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN  233 (866)
T ss_pred             HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999988888888888876443     2234445555565543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.92  E-value=0.00024  Score=68.70  Aligned_cols=49  Identities=12%  Similarity=0.306  Sum_probs=29.3

Q ss_pred             hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        233 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       233 ~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      +.+.++|.|..+    ....|--.+..+..++.+.|... ...++|.+..+|.+
T Consensus       269 ~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~  317 (556)
T PF05918_consen  269 MCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKK  317 (556)
T ss_dssp             HHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHT
T ss_pred             HHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHH
Confidence            345677766666    33566677888999999988766 45566888887775

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2032|consensus

Probab=97.92  E-value=0.00044  Score=64.81  Aligned_cols=244  Identities=16%  Similarity=0.102  Sum_probs=144.2

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--Hhhchhhhh-hhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFL-TETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l-~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      ..+.....|++...|..+++.|+..+.....+-  -...++..+ ..+.++..+ |...+...|..+.+.....+...++
T Consensus       261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~  340 (533)
T KOG2032|consen  261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL  340 (533)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence            344456678889999999999999987643331  122344444 456666555 9999998888877665555666677


Q ss_pred             chH---HhhhccCchhHHHHHHHHHHHHHHhhCChhH---Hh----hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         92 LPP---LESLATVEETVVRDKAVESLRLISAQHSPHD---LE----AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        92 lp~---l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~---~~----~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      +++   +.++..|+++.+|.+|...++.++..-+...   ..    ..+.|++.. .+|+++.+-.++-..+..+++.+ 
T Consensus       341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~ACr~~~~~c~p~l-  418 (533)
T KOG2032|consen  341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVARACRSELRTCYPNL-  418 (533)
T ss_pred             hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHHHHHHHHHhcCchh-
Confidence            776   5667889999999999999998888765522   11    122233322 36666544433322222222222 


Q ss_pred             cchHHHHHHHHHhhccCCCccccc---c-hhhcCccchH---HHHHHHHHhhcCCCH-HHHHHHHHhhHHHHHHhchhh-
Q psy14015        162 AGVKAELRSHFRNLCQDDTPMQQG---H-VWECGSGVKA---ELRSHFRNLCQDDTP-MVRRAAAGKLGELAKVVEVDY-  232 (318)
Q Consensus       162 ~~~~~~l~~~~~~l~~~~~~~vR~---~-v~~~~~~~~~---~ll~~l~~l~~D~~~-~VR~~aa~~L~~l~~~~~~~~-  232 (318)
                        .+++....|.+......+..+.   . |..+.....+   .+.....-+++ -.| .||.++..-.+.+.....++. 
T Consensus       419 --~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~-sswe~vr~aavl~t~~~vd~l~~~~c  495 (533)
T KOG2032|consen  419 --VRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFS-SSWEQVREAAVLKTTRSVDSLVRAAC  495 (533)
T ss_pred             --HHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhhee-cchHHHHHHHHHHHHHHHHHhHHHHH
Confidence              3445444454332111111000   0 1111100001   01111111222 345 789888888888877665442 


Q ss_pred             ---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        233 ---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       233 ---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                         ....+...+..+.+||-++|+.++.++++-+.
T Consensus       496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence               23457788999999999999999999987665

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.00019  Score=64.42  Aligned_cols=261  Identities=16%  Similarity=0.143  Sum_probs=166.0

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhh------chhhhhhhhcCChH--HHHHHHHHHHcccccCcCcc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG------ELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~------~llp~l~~l~~D~~--~VR~~aa~~L~~l~~~~~~~   85 (318)
                      .++.++..|.+.+..+|-.++..|+.||-.  .+.++.      .|-|.|.-+.+...  .+-+.+...|..++.--..+
T Consensus       158 AVPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~  235 (526)
T COG5064         158 AVPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP  235 (526)
T ss_pred             chHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence            367888899999999999999999998621  111222      23344433333333  25577788889888733322


Q ss_pred             c---chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         86 E---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        86 ~---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                      -   .....+|+|..|+...+++|-.-|.-++.++..-..+.  .+.+ -+-+.+.+++..++..+..-|....|.+...
T Consensus       236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG  315 (526)
T COG5064         236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG  315 (526)
T ss_pred             CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence            2   33457899999988888888777777777776543321  1111 1344566677777666666666666655443


Q ss_pred             cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--h-hhHhh
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--D-YLKTD  236 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~-~~~~~  236 (318)
                      -....+ .                         ...--.++.|..++..+..++|+.++..++.+...-..  + .+...
T Consensus       316 ~D~QTq-v-------------------------iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~n  369 (526)
T COG5064         316 SDDQTQ-V-------------------------IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDAN  369 (526)
T ss_pred             Ccccee-h-------------------------heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcc
Confidence            221100 0                         12233578888899999999999999999988642111  1 12346


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC-ChhhhhHh-----hHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLL-SQSDVEQL-----VMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l-~~~~~~~~-----l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      ++|.+.+++...++..|+-|+.++.+..... +.-+...+     .+..|+.+|.       |+-|..++|.+-.++++
T Consensus       370 liPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~-------~~dNkiiev~LD~~eni  441 (526)
T COG5064         370 LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-------VVDNKIIEVALDAIENI  441 (526)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh-------ccCccchhhhHHHHHHH
Confidence            9999999999999999999999998876432 22222222     3334444443       44556888888777664

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.86  E-value=2.2e-05  Score=52.15  Aligned_cols=55  Identities=29%  Similarity=0.184  Sum_probs=41.5

Q ss_pred             chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhH
Q psy14015        143 FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLG  222 (318)
Q Consensus       143 ~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~  222 (318)
                      |.+|..|+..||.+........+                           ....+++|.+..+++|+++.||.+|+.+||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~---------------------------~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQ---------------------------PYLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHH---------------------------HHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHH---------------------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            67899999988864333222111                           133678999999999999999999999998


Q ss_pred             HH
Q psy14015        223 EL  224 (318)
Q Consensus       223 ~l  224 (318)
                      .+
T Consensus        54 ~l   55 (55)
T PF13513_consen   54 NL   55 (55)
T ss_dssp             CH
T ss_pred             cC
Confidence            64

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0009  Score=66.79  Aligned_cols=167  Identities=18%  Similarity=0.234  Sum_probs=121.3

Q ss_pred             hcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhh-hcCChHHHHHHHHHHHcccccCcCcccchhccchHHhhhcc
Q psy14015         22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLAT  100 (318)
Q Consensus        22 l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~-l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~  100 (318)
                      +.+.+...|..+++++-... ..|.+  ...+.|-+.+ ...++.|+++-+--.|..+++.-  ++-.--.++.++.=+.
T Consensus        28 l~s~n~~~kidAmK~iIa~M-~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQM-SLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence            77888999999999875543 25765  4566666655 44556679999888888887632  2222223455666678


Q ss_pred             CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015        101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT  180 (318)
Q Consensus       101 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~  180 (318)
                      |+++.+|..|+..+..+    ....+...+++.+++.++|+...||..|+-.+.+++..-.            ++     
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~------------~l-----  161 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK------------DL-----  161 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH------------hh-----
Confidence            99999999999887765    3445666789999999999999999999998887763321            11     


Q ss_pred             cccccchhhcCccchHH-HHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015        181 PMQQGHVWECGSGVKAE-LRSHFRNLCQDDTPMVRRAAAGKLGELAKV  227 (318)
Q Consensus       181 ~~vR~~v~~~~~~~~~~-ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~  227 (318)
                                   ..+. +...+..++.|.+|.|-.+|..+|.++-.-
T Consensus       162 -------------~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         162 -------------YHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -------------hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence                         1122 466777888899999998888888887654

>KOG2137|consensus

Probab=97.82  E-value=0.00061  Score=66.71  Aligned_cols=94  Identities=19%  Similarity=0.289  Sum_probs=80.8

Q ss_pred             cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015        193 GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQSD  271 (318)
Q Consensus       193 ~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll-~D~~~~VR~aa~~~l~~l~~~l~~~~  271 (318)
                      +++++++|.+..-.+|....+...+.+.++.+++.+.-..+.+.|+|.+.++. +..+..||..++-+++.+.+.+.+-.
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~  464 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA  464 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999988888899999999885 45577999999999999998888877


Q ss_pred             hhHhhHHHHHHhccc
Q psy14015        272 VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       272 ~~~~l~p~l~~ll~D  286 (318)
                      +.+.+.|++..--.+
T Consensus       465 v~d~~lpi~~~~~~~  479 (700)
T KOG2137|consen  465 VLDELLPILKCIKTR  479 (700)
T ss_pred             hHHHHHHHHHHhcCC
Confidence            777777766655343

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.79  E-value=0.005  Score=58.57  Aligned_cols=179  Identities=17%  Similarity=0.150  Sum_probs=123.3

Q ss_pred             cchHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015         91 LLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (318)
Q Consensus        91 llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l  168 (318)
                      ++.-+..+ ...+++..|..+...+..++++++.++..+.++..+.... .+.....|..+...+.++...+       +
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL-------v  262 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL-------V  262 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH-------H
Confidence            44444444 3444689999999999999999876553344444443333 3333445555555544332211       1


Q ss_pred             HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---------------chhhh
Q psy14015        169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---------------EVDYL  233 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---------------~~~~~  233 (318)
                          .    -..            ....++...+.+++.|  +.+...++++|+-+..-.               -++++
T Consensus       263 ----~----R~~------------~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~  320 (415)
T PF12460_consen  263 ----M----RGH------------PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF  320 (415)
T ss_pred             ----H----cCC------------chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence                0    000            1234567777888877  778888999888887531               13567


Q ss_pred             HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ...++|.+.+..+..+...|.....++..+.+.++++...   ..++|.+++.|.=          ++++|+...+..
T Consensus       321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~----------~~~~v~~s~L~t  388 (415)
T PF12460_consen  321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL----------PDADVLLSSLET  388 (415)
T ss_pred             HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH
Confidence            7889999999999998889999999999999999987654   4599999999987          778888877744

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1078|consensus

Probab=97.74  E-value=0.0015  Score=64.43  Aligned_cols=54  Identities=17%  Similarity=0.113  Sum_probs=38.3

Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ..+..-=.+..||.+++.++.+++  .+.+...+.+.-.+.+|+.|          .+.+||-.+.
T Consensus       471 iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D----------~DdevRdrAt  524 (865)
T KOG1078|consen  471 IYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLND----------SDDEVRDRAT  524 (865)
T ss_pred             HhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcC----------chHHHHHHHH
Confidence            334444456788999999988888  55666666677778888888          7777776553

>KOG4653|consensus

Probab=97.73  E-value=0.0018  Score=64.47  Aligned_cols=204  Identities=19%  Similarity=0.180  Sum_probs=139.3

Q ss_pred             CCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHH--hhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc
Q psy14015          8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIAL--ALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG   84 (318)
Q Consensus         8 ~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~--~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~   84 (318)
                      ......|....+..+.|+.+..|-.++..|..+..  .-.+-...+.++......+.|+++ |--.+.+.+..+++.   
T Consensus       722 ~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---  798 (982)
T KOG4653|consen  722 YSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---  798 (982)
T ss_pred             ccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---
Confidence            34455668888999999999999999999999875  212222445678888889999888 888888877777753   


Q ss_pred             ccchhccchHHhh-hccC---chhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         85 PEYVHCLLPPLES-LATV---EETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        85 ~~~~~~llp~l~~-l~~d---~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                        ..+.++|.+.. ..+.   +..+-|...-++++.+++..++  ..+...++..+.+...|+.-..|.+++..+|.++.
T Consensus       799 --y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq  876 (982)
T KOG4653|consen  799 --YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ  876 (982)
T ss_pred             --cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence              34557776644 3222   1134455555888888888776  33444566677777788877889999999997765


Q ss_pred             ccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh-hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015        159 RVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL-CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI  237 (318)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l-~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l  237 (318)
                      ...-.+..++                           -++...+..+ ..|...-||++|+.-+..+-...|.     ++
T Consensus       877 ~~a~~vsd~~---------------------------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~-----dl  924 (982)
T KOG4653|consen  877 LLAFQVSDFF---------------------------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE-----DL  924 (982)
T ss_pred             HHhhhhhHHH---------------------------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch-----hh
Confidence            5442222221                           2233333333 4599999999999999999988774     46


Q ss_pred             HHHHHHhhcCC
Q psy14015        238 IPMFVNLAQDE  248 (318)
Q Consensus       238 lp~l~~ll~D~  248 (318)
                      +|++...+.|-
T Consensus       925 Lpilr~~l~Dl  935 (982)
T KOG4653|consen  925 LPILRLLLIDL  935 (982)
T ss_pred             HHHHHHHHHHH
Confidence            66665544443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.69  E-value=0.0012  Score=65.85  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=82.5

Q ss_pred             CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc
Q psy14015          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus         7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~   85 (318)
                      .|++.+..+..+++.++|+|+.+|-.+++.++.+    +.......+++-+.++++|..+ ||+.|+-.+.++=+ ++..
T Consensus        86 ~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~  160 (757)
T COG5096          86 KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKD  160 (757)
T ss_pred             CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHh
Confidence            3567777788888899999999999999988885    4444667788888888888887 99988888776632 2333


Q ss_pred             cchhc-cchHHhhhccCchhHHHHHHHHHHHHHHhh
Q psy14015         86 EYVHC-LLPPLESLATVEETVVRDKAVESLRLISAQ  120 (318)
Q Consensus        86 ~~~~~-llp~l~~l~~d~~~~VR~~a~~~l~~l~~~  120 (318)
                      .+.+. ...++..++.|+++.|-..|+.++..+-..
T Consensus       161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         161 LYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            33333 566778888888888888888888887665

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.68  E-value=0.01  Score=54.13  Aligned_cols=209  Identities=17%  Similarity=0.176  Sum_probs=126.9

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHh-hChHh---HhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcC----c
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQER---TRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVG----G   84 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~~~---~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~----~   84 (318)
                      .+...++.+.+.....|..++..+..+... .-++.   ....|++.+.+.++-.. +-+..+++.++-++-.+|    .
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            377888999888999999999999998643 22232   34567788877776533 344556677777776666    2


Q ss_pred             ccchhccchHHhhhccCch--hHHHHHHHHHHHHHHhhCC--hhHHhhhHHHHHH-----Hhhc-CC---------Cchh
Q psy14015         85 PEYVHCLLPPLESLATVEE--TVVRDKAVESLRLISAQHS--PHDLEAHFVPLVQ-----RLAS-GD---------WFTS  145 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~--~~~~~~~ilp~~~-----~l~~-d~---------~~~v  145 (318)
                      ......+.|.|...+.|..  ..+|.+++.+|..++=...  .+.+.. .+..+.     ...+ |.         +..+
T Consensus       124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE-LMESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            4456678899999988875  3567788777766543322  222221 112211     1111 11         1223


Q ss_pred             hhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015        146 RTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA  225 (318)
Q Consensus       146 R~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~  225 (318)
                      ..+|...-+-++..++..   .+    .                   ...+..+|.|..+++.++.+||.+|..+++-+.
T Consensus       203 ~~aAL~aW~lLlt~~~~~---~~----~-------------------~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDS---KL----E-------------------DLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHhcCCHH---HH----H-------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            334433333333222211   00    0                   122556899999999999999999999999887


Q ss_pred             HHhch---h---hhHhhHHHHHHHhhcCCc
Q psy14015        226 KVVEV---D---YLKTDIIPMFVNLAQDEQ  249 (318)
Q Consensus       226 ~~~~~---~---~~~~~llp~l~~ll~D~~  249 (318)
                      +....   +   .-.+.++..+..|.+|.+
T Consensus       257 E~~~~~~~~~~~~~~~~l~~~l~~La~dS~  286 (309)
T PF05004_consen  257 ELARDHEEDFLYEDMEELLEQLRELATDSS  286 (309)
T ss_pred             HHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence            65432   1   123456666677766653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1949|consensus

Probab=97.61  E-value=0.001  Score=64.89  Aligned_cols=146  Identities=18%  Similarity=0.145  Sum_probs=92.9

Q ss_pred             hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh
Q psy14015        127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC  206 (318)
Q Consensus       127 ~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~  206 (318)
                      ...+-|.+-+-++-++..||.+|+.+|-.+++-..+..-.+..+.+                      -+.=...+.+++
T Consensus       172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i----------------------~~kQf~~l~~LL  229 (1005)
T KOG1949|consen  172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSI----------------------IQKQFEELYSLL  229 (1005)
T ss_pred             HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHH----------------------HHHHHHHHHHHh
Confidence            3345566666667788899999999988777665543322211111                      112235567788


Q ss_pred             cCCCHHHHHHHHHhhHHHHHH----hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHH
Q psy14015        207 QDDTPMVRRAAAGKLGELAKV----VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ  282 (318)
Q Consensus       207 ~D~~~~VR~~aa~~L~~l~~~----~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~  282 (318)
                      .|+.+.||..|+..+.++...    +.+..+.+-+-.++..+..|+...||.+..+++..++..=-.-...+.++|.+-.
T Consensus       230 ~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~  309 (1005)
T KOG1949|consen  230 EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRY  309 (1005)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcch
Confidence            888888888888777766643    2333333333346677888888888888888888777432223345678888888


Q ss_pred             hccccccccccC
Q psy14015        283 CSVQIVDHKFCP  294 (318)
Q Consensus       283 ll~D~~~~~~~~  294 (318)
                      ++.|.+.+||.+
T Consensus       310 ~l~D~se~VRvA  321 (1005)
T KOG1949|consen  310 SLHDNSEKVRVA  321 (1005)
T ss_pred             hhhccchhHHHH
Confidence            888844444443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.60  E-value=0.0084  Score=54.61  Aligned_cols=178  Identities=16%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             cCchhHHHHHHHHHHHHHHhh-CChhHHh---hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015        100 TVEETVVRDKAVESLRLISAQ-HSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL  175 (318)
Q Consensus       100 ~d~~~~VR~~a~~~l~~l~~~-~~~~~~~---~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l  175 (318)
                      .+.....|+.|++.+..+... +..+.+.   ..++..+.+-++-....-+.-|+.+++.++-.++..            
T Consensus        53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g------------  120 (309)
T PF05004_consen   53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG------------  120 (309)
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC------------
Confidence            445578899999998888744 3344332   335555555444332233344545554433222200            


Q ss_pred             ccCCCcccccchhhcCccchHHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHh------hc
Q psy14015        176 CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT--PMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNL------AQ  246 (318)
Q Consensus       176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~l------l~  246 (318)
                        ..           .+.+.+.+.|.+.+.++|..  ..+|.+|+.+|+.++-+.|.+ .....++..+...      -.
T Consensus       121 --~~-----------~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~  187 (309)
T PF05004_consen  121 --ED-----------SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKS  187 (309)
T ss_pred             --cc-----------HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCc
Confidence              00           01245678899999999865  578999999999877665543 1223233444411      11


Q ss_pred             C---------CcHHHHHHHHHHHHHHHhhCChhhh---hHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhh
Q psy14015        247 D---------EQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLR  312 (318)
Q Consensus       247 D---------~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~  312 (318)
                      |         ++..|..+|+.+-+-+...++....   .+..+|.|..+|.-          .+.+||+.+-+++-|=
T Consensus       188 ~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s----------~d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  188 DGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDS----------DDVDVRIAAGEAIALL  255 (309)
T ss_pred             CCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHH
Confidence            2         2467899999999989888877433   34588999999999          8999999999888763

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2025|consensus

Probab=97.56  E-value=0.0017  Score=63.38  Aligned_cols=206  Identities=14%  Similarity=0.103  Sum_probs=128.3

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG--QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      +-.++....+.+..||...++-|..+....+  ++...+.++..+..-+.|-.+ ||..|...|..+..--+.+  .-.+
T Consensus        87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v  164 (892)
T KOG2025|consen   87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPV  164 (892)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccH
Confidence            5566677778888888888888888765322  343555566666656667666 9999988888886422222  2234


Q ss_pred             chHHhhhc-cCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhh-hhhhhccccCcchHHHHH
Q psy14015         92 LPPLESLA-TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG-LFSVCYPRVTAGVKAELR  169 (318)
Q Consensus        92 lp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~-~l~~~~~~~~~~~~~~l~  169 (318)
                      ..++..++ .|++++||.+|+..+..          .+.-+|.+..-+.|.+..+|..+-. .++++             
T Consensus       165 ~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-------------  221 (892)
T KOG2025|consen  165 VNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-------------  221 (892)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-------------
Confidence            45555553 57888998887754322          1235677777778877667765422 12221             


Q ss_pred             HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHH-HHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015        170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE-LAKVVEVDYLKTDIIPMFVNLAQDE  248 (318)
Q Consensus       170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~-l~~~~~~~~~~~~llp~l~~ll~D~  248 (318)
                          .++.               ...+.-...+-+.++|....||.++...+.. +..+.     .-.++..+.++=-.-
T Consensus       222 ----d~r~---------------lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsn  277 (892)
T KOG2025|consen  222 ----DLRS---------------LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSN  277 (892)
T ss_pred             ----hhhh---------------hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhcccc
Confidence                0000               0123345667788899999999999887754 22211     123666777776666


Q ss_pred             cHHHHHHHHHHHHH-HHhhCCh
Q psy14015        249 QDSVRLLAVEACVS-IASLLSQ  269 (318)
Q Consensus       249 ~~~VR~aa~~~l~~-l~~~l~~  269 (318)
                      +..|+..+.+++-+ +.+.+|.
T Consensus       278 ss~vavk~lealf~~v~e~v~~  299 (892)
T KOG2025|consen  278 SSEVAVKALEALFSGVREDVGS  299 (892)
T ss_pred             chHHHHHHHHHHHHHHHHHhhh
Confidence            66888888888777 5555544

>KOG1943|consensus

Probab=97.54  E-value=0.0061  Score=62.20  Aligned_cols=237  Identities=19%  Similarity=0.175  Sum_probs=147.7

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHHHHHHHHHHHcccccC-cCcccchhcc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTPN-VGGPEYVHCL   91 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~VR~~aa~~L~~l~~~-~~~~~~~~~l   91 (318)
                      |..++..++|.+-.+|=++++.++.+...+.++ ...+++.-+..+...  ++.....++-.|.+++.. +--+.....+
T Consensus       343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV  421 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV  421 (1133)
T ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            667778899999999999999999999888765 445555555554433  233777888898888752 1123345567


Q ss_pred             chHHhh-hccCch-------hHHHHHHHHHHHHHHhhCChhHHhh---hHHH-HHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         92 LPPLES-LATVEE-------TVVRDKAVESLRLISAQHSPHDLEA---HFVP-LVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        92 lp~l~~-l~~d~~-------~~VR~~a~~~l~~l~~~~~~~~~~~---~ilp-~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                      +|++.. +.-|+.       ..||.+|...+-.++...++.....   .+.+ ++...+-|++..+|++|...|.+.+++
T Consensus       422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR  501 (1133)
T KOG1943|consen  422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence            887654 333333       5899999999999999888765444   1222 233456788999999999998888777


Q ss_pred             cCcc-hHHHHHH------------HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc----CCCHHHHHHHHHhhH
Q psy14015        160 VTAG-VKAELRS------------HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ----DDTPMVRRAAAGKLG  222 (318)
Q Consensus       160 ~~~~-~~~~l~~------------~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~----D~~~~VR~~aa~~L~  222 (318)
                      .+.- .+-++..            .+..+|....            ....+.-|.|-.+.+    +=+..+|..++.+|.
T Consensus       502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia------------~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~  569 (1133)
T KOG1943|consen  502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIA------------EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH  569 (1133)
T ss_pred             CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHH------------hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            5532 2323221            1222221110            122333444444444    445689999999999


Q ss_pred             HHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        223 ELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       223 ~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                      ++...- ++......+|-+....-.++..-|-.+..+.+.+..
T Consensus       570 ~Ls~~~-pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  570 KLSLTE-PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHhh-HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            987653 333333444433333334445566666555555543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.53  E-value=0.0067  Score=53.57  Aligned_cols=214  Identities=14%  Similarity=0.155  Sum_probs=132.4

Q ss_pred             HHHHHHHhc-CccHHHHHHHHHhHHHHHHh-hChHhHhh-chhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchh-
Q psy14015         15 IAVLIDELK-NEDVQLRLNSIKKLSTIALA-LGQERTRG-ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVH-   89 (318)
Q Consensus        15 i~~l~~~l~-~~~~~~R~~~~~~L~~ia~~-lg~~~~~~-~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~-   89 (318)
                      +..++..|+ ++++.++..+.-.++..+.. ...+..++ ..++.+..++.++++ ||..+...|..++.........+ 
T Consensus        14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~   93 (254)
T PF04826_consen   14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM   93 (254)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence            778888888 56899999999999987654 22332322 578999999999887 99999999998876433322222 


Q ss_pred             ccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015         90 CLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (318)
Q Consensus        90 ~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l  168 (318)
                      ++-.++.....++ +..+..+++..|..+.-.-.-.......+|.+.+++...+...|..+.+.|..+...  +...+++
T Consensus        94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~L  171 (254)
T PF04826_consen   94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTREL  171 (254)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHH
Confidence            3333455554444 678888999888888633222233334677777888777777887777766543211  1111221


Q ss_pred             HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhchhh--------h------
Q psy14015        169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVEVDY--------L------  233 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~~~--------~------  233 (318)
                                               ...+.++.|..+++.. ..++-..+..-+..+...+.++.        .      
T Consensus       172 -------------------------l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~  226 (254)
T PF04826_consen  172 -------------------------LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFS  226 (254)
T ss_pred             -------------------------HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHH
Confidence                                     1123456677777654 45666666666666666554320        0      


Q ss_pred             ----HhhHHHHHHHhhcCCcHHHHHH
Q psy14015        234 ----KTDIIPMFVNLAQDEQDSVRLL  255 (318)
Q Consensus       234 ----~~~llp~l~~ll~D~~~~VR~a  255 (318)
                          .+.+-.-+..+..+|+++||..
T Consensus       227 ~~~e~~~~~~~l~~l~~h~d~ev~~~  252 (254)
T PF04826_consen  227 LFGESSQLAKKLQALANHPDPEVKEQ  252 (254)
T ss_pred             HHccHHHHHHHHHHHHcCCCHHHhhh
Confidence                1123334455566777777653

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.52  E-value=0.011  Score=52.47  Aligned_cols=136  Identities=19%  Similarity=0.122  Sum_probs=81.6

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcCChHHHHHHHHHHHcccccC--cCcccchhc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIYDEDEVLLALAEQLGTFTPN--VGGPEYVHC   90 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~--~~~~~~~~~   90 (318)
                      .+-+.|.++++.+|..++.-|+.+...+.++.    ..+-+..|+..-++|...+..+ .+.+..+.+.  ++.+.    
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~~~----   77 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSPES----   77 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCChhh----
Confidence            45578999999999999999999988777542    3456778887777655545444 6666666531  22211    


Q ss_pred             cchHHhhhccC-----chhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCC-Cchhhhhhhhhhhhhc
Q psy14015         91 LLPPLESLATV-----EETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGD-WFTSRTSACGLFSVCY  157 (318)
Q Consensus        91 llp~l~~l~~d-----~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~  157 (318)
                      ...++..+.+.     ---..|..+.+.+..+.+....+.  ....++..+.+.+.++ +++.=..+-.++..+.
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~  152 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL  152 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            22333333322     225778888888888887754321  2234555566665553 3443334444444443

>KOG1949|consensus

Probab=97.50  E-value=0.00061  Score=66.38  Aligned_cols=145  Identities=15%  Similarity=0.068  Sum_probs=90.8

Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhH-------HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-h
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHD-------LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-V  164 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-------~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~  164 (318)
                      |++-.-++-++..||..|+..+..+...-+++.       ..+.=...+.+|+.|+.+.+|..|+.-+.++...+ |+ .
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-We~i  255 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-WEMI  255 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHc
Confidence            666666788899999999999988877665532       11112234567899999999999977666543221 11 0


Q ss_pred             HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh
Q psy14015        165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL  244 (318)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l  244 (318)
                      .+.                         ...+-+-.++-.+..|.+..||.+....++.+..+--.-...+.++|.+..+
T Consensus       256 P~~-------------------------i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~  310 (1005)
T KOG1949|consen  256 PPT-------------------------ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYS  310 (1005)
T ss_pred             CHH-------------------------HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchh
Confidence            000                         1112222334455666677777777777777765433333456677777777


Q ss_pred             hcCCcHHHHHHHHHHHHHH
Q psy14015        245 AQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       245 l~D~~~~VR~aa~~~l~~l  263 (318)
                      +.|.+..||-+++.-+..+
T Consensus       311 l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  311 LHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             hhccchhHHHHHHHHHHHH
Confidence            7777777777776655443

>KOG2062|consensus

Probab=97.47  E-value=0.0034  Score=61.64  Aligned_cols=161  Identities=16%  Similarity=0.131  Sum_probs=102.4

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH  129 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  129 (318)
                      ++.-|++.+++.|.++ .|...+-.+. ++ .+|. .....+-.+|---.+|.+++||++|+.+++-++-. .++     
T Consensus       518 e~Ad~lI~el~~dkdpilR~~Gm~t~a-lA-y~GT-gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~-----  588 (929)
T KOG2062|consen  518 EDADPLIKELLRDKDPILRYGGMYTLA-LA-YVGT-GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE-----  588 (929)
T ss_pred             hhhHHHHHHHhcCCchhhhhhhHHHHH-HH-Hhcc-CchhhHHHhhcccccccchHHHHHHHHHheeeEec-Chh-----
Confidence            4567888899988888 7876554433 11 1221 11121222233336788999999999888776543 223     


Q ss_pred             HHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015        130 FVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD  208 (318)
Q Consensus       130 ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D  208 (318)
                      .+|.+.++ .++-+++||+.++..||..|..-+.                                 ++-+..+-.+..|
T Consensus       589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~---------------------------------~eAi~lLepl~~D  635 (929)
T KOG2062|consen  589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL---------------------------------KEAINLLEPLTSD  635 (929)
T ss_pred             hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc---------------------------------HHHHHHHhhhhcC
Confidence            23333344 4455789999999999877665432                                 4456777778889


Q ss_pred             CCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhcCCcHHHH
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVR  253 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~D~~~~VR  253 (318)
                      ++.-||+.|.-+++.+.-....+.  -...+...|.+...|-...+-
T Consensus       636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHH
Confidence            999999999999998876543321  123455566667777665543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.0027  Score=60.73  Aligned_cols=86  Identities=19%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHh
Q psy14015        198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQL  275 (318)
Q Consensus       198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~  275 (318)
                      ++..+--+....++.||...|.+||-.+..-|.    +..+.++..|..|+..-||++|+-+.+-+.-...++-  ....
T Consensus       587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~  662 (926)
T COG5116         587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR  662 (926)
T ss_pred             hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence            334444445567899999999999988876665    3467788999999999999999999888887666542  2345


Q ss_pred             hHHHHHHhcccc
Q psy14015        276 VMPTLRQCSVQI  287 (318)
Q Consensus       276 l~p~l~~ll~D~  287 (318)
                      +...+.++..|+
T Consensus       663 I~k~f~~vI~~K  674 (926)
T COG5116         663 IIKKFNRVIVDK  674 (926)
T ss_pred             HHHHHHHHHhhh
Confidence            777778888773

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.40  E-value=0.0054  Score=58.36  Aligned_cols=215  Identities=16%  Similarity=0.147  Sum_probs=131.6

Q ss_pred             hhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhhC--ChhHHh
Q psy14015         53 LIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQH--SPHDLE  127 (318)
Q Consensus        53 llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~--~~~~~~  127 (318)
                      ++.-+..++.. +++ .|.++++.+..++.-....+....++..+..-. ...+...|..+++.+.-+..-+  ......
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~  269 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA  269 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence            44455444433 335 899999888877754433333333444333333 4556777888888877766543  112223


Q ss_pred             hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      ..++..+.+++.|  ..+...|+..|+.+.........+           .....||-   -..+.+..+++|.+.+..+
T Consensus       270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~-----------~~~a~vkl---LykQR~F~~~~p~L~~~~~  333 (415)
T PF12460_consen  270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNK-----------ENHANVKL---LYKQRFFTQVLPKLLEGFK  333 (415)
T ss_pred             HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCc-----------cccchhhh---HHhHHHHHHHHHHHHHHHh
Confidence            3466666677776  345566666666554332110000           00000110   0001244678899999988


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhh---HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHH
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYL---KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQ  282 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~  282 (318)
                      +.+...|.+...+|+.+...+..+.+   ...++|.+.+.+.-++..+|.++.+++..+..--++-  .+.+.++|.+++
T Consensus       334 ~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  334 EADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK  413 (415)
T ss_pred             hcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            88888999999999999998876543   4579999999999999999999999999888655221  123457776665


Q ss_pred             h
Q psy14015        283 C  283 (318)
Q Consensus       283 l  283 (318)
                      +
T Consensus       414 l  414 (415)
T PF12460_consen  414 L  414 (415)
T ss_pred             c
Confidence            4

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1248|consensus

Probab=97.36  E-value=0.024  Score=58.67  Aligned_cols=243  Identities=12%  Similarity=0.146  Sum_probs=151.8

Q ss_pred             CCCCCCchHHHHHHHh-cCccHHHHHHHHHhHHHHHHhhChHhH----hhchhhhhhhhcCChHH-HHHHHHHHHccccc
Q psy14015          7 APDDSLYPIAVLIDEL-KNEDVQLRLNSIKKLSTIALALGQERT----RGELIPFLTETIYDEDE-VLLALAEQLGTFTP   80 (318)
Q Consensus         7 ~~~~~l~~i~~l~~~l-~~~~~~~R~~~~~~L~~ia~~lg~~~~----~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~   80 (318)
                      +++..+..+-.+.... ++.+..++..+-+-|.++...-.-+..    ...+...+..-.++... ++......|..+.+
T Consensus       647 ~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~  726 (1176)
T KOG1248|consen  647 QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK  726 (1176)
T ss_pred             ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            3344444433333333 455778888888888888655111111    22233333333344344 88888888888877


Q ss_pred             CcCcc--cchhccchHHhhhccCchhHHHHHHHHHHHHHH--hhCCh------hHHhhhHHHHHHHhhcCCCchhhhhhh
Q psy14015         81 NVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRLIS--AQHSP------HDLEAHFVPLVQRLASGDWFTSRTSAC  150 (318)
Q Consensus        81 ~~~~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~--~~~~~------~~~~~~ilp~~~~l~~d~~~~vR~~a~  150 (318)
                      ..+..  ++....+|-+.=+.++.+..-|..|..+|..++  .....      +...+.+++.+...+.+++.+++.+.+
T Consensus       727 ~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~I  806 (1176)
T KOG1248|consen  727 LLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDI  806 (1176)
T ss_pred             hccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            66522  233444453333338888888999999998888  33211      234444666665555555554444322


Q ss_pred             hhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch
Q psy14015        151 GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV  230 (318)
Q Consensus       151 ~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~  230 (318)
                      -.+..++..            |..+.+              ......++..+-..+...++++|++|+.-+..++..+..
T Consensus       807 vai~~il~e------------~~~~ld--------------~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe  860 (1176)
T KOG1248|consen  807 VAITHILQE------------FKNILD--------------DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE  860 (1176)
T ss_pred             HHHHHHHHH------------Hhcccc--------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence            222222111            111111              124466777778888899999999999999999988875


Q ss_pred             hhh---HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHh
Q psy14015        231 DYL---KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL  275 (318)
Q Consensus       231 ~~~---~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~  275 (318)
                      ..+   .+.++|.+..+++|....+|..+-.-+..+..-||.+..+.+
T Consensus       861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~  908 (1176)
T KOG1248|consen  861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF  908 (1176)
T ss_pred             HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence            533   456999999999999999999999999999999988765543

>KOG1061|consensus

Probab=97.33  E-value=0.01  Score=58.70  Aligned_cols=234  Identities=14%  Similarity=0.167  Sum_probs=149.0

Q ss_pred             CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccchhc
Q psy14015         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHC   90 (318)
Q Consensus        12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~   90 (318)
                      ...++.+..++.+.-...|..+++++-.- -.+|.+  ...+.|-+....+-.+ +.++-+-..+...++  +.++-.-.
T Consensus        12 k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~~   86 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAIL   86 (734)
T ss_pred             hhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHHh
Confidence            44567777888777777788888776332 237755  4567777777665544 588887778887765  22333333


Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS  170 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~  170 (318)
                      .++.+..=+.|+++.+|.-|+..++.+    +-..+.+++..-+.+.++|+...+|..|+-...+++..-.         
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---------  153 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---------  153 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---------
Confidence            445566667899999999998776554    3344556666667788899999999988777665543211         


Q ss_pred             HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcC
Q psy14015        171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQD  247 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D  247 (318)
                         +++                 ...-+++.+..+..|+++.|=.+|..+|.++.+.-...   .....++..+...++.
T Consensus       154 ---~~~-----------------~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e  213 (734)
T KOG1061|consen  154 ---DLV-----------------EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE  213 (734)
T ss_pred             ---hhc-----------------cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH
Confidence               111                 22457888999999999999999999999998753211   1122333444444444


Q ss_pred             CcHHHHHHHHHHHHHHHhhCChhh-hhHhhHHHHHHhccc
Q psy14015        248 EQDSVRLLAVEACVSIASLLSQSD-VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       248 ~~~~VR~aa~~~l~~l~~~l~~~~-~~~~l~p~l~~ll~D  286 (318)
                      -+.|-|.   ..+..++..+.++. -.+.++..+.+.|..
T Consensus       214 c~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh  250 (734)
T KOG1061|consen  214 CTEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQH  250 (734)
T ss_pred             hhhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhcc
Confidence            4444444   34455566665543 223455566666665

>KOG2956|consensus

Probab=97.30  E-value=0.0097  Score=55.77  Aligned_cols=175  Identities=15%  Similarity=0.104  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcccccCcCc----ccchhccchHHhhhccC-chhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhc
Q psy14015         67 VLLALAEQLGTFTPNVGG----PEYVHCLLPPLESLATV-EETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLAS  139 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~----~~~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~  139 (318)
                      -|..+...|..+.- .|.    +++...|+-.+.+.+.| .++.+|.-|+..|..++..-+.  .+..+..+-.+.+-.+
T Consensus       303 ~~k~alsel~~m~~-e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~  381 (516)
T KOG2956|consen  303 ERKEALSELPKMLC-EGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK  381 (516)
T ss_pred             HHHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence            56666666665532 122    22223455555566666 7888999999999999987554  2344445555556666


Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG  219 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~  219 (318)
                      |....+=..|.+-....                  ++ ...|.          .--..+.|.+..    .+...--++++
T Consensus       382 ds~~~v~~~Aeed~~~~------------------la-s~~P~----------~~I~~i~~~Ilt----~D~~~~~~~iK  428 (516)
T KOG2956|consen  382 DSQDEVMRVAEEDCLTT------------------LA-SHLPL----------QCIVNISPLILT----ADEPRAVAVIK  428 (516)
T ss_pred             CCchhHHHHHHHHHHHH------------------HH-hhCch----------hHHHHHhhHHhc----CcchHHHHHHH
Confidence            65433222222211110                  11 11111          011233344433    34444456777


Q ss_pred             hhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHh
Q psy14015        220 KLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL  275 (318)
Q Consensus       220 ~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~  275 (318)
                      .+.++++-+..|.   +..++.|.+.+....++..||++++.++..+-..+|.+..+.+
T Consensus       429 m~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh  487 (516)
T KOG2956|consen  429 MLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH  487 (516)
T ss_pred             HHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence            8888988887764   4678999999999999999999999999999999997665544

>KOG1517|consensus

Probab=97.29  E-value=0.012  Score=60.11  Aligned_cols=215  Identities=17%  Similarity=0.093  Sum_probs=128.7

Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH---HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK  165 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~  165 (318)
                      ..-+|+..+.+-+.  .-|..|+.-|..+...-+=..   ..--|.|++.+|++++-...|-..+-+-.+|++-- ..-+
T Consensus       471 PeQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ  547 (1387)
T KOG1517|consen  471 PEQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQ  547 (1387)
T ss_pred             hHhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhH
Confidence            33566665554443  335566777777776532211   11238999999999987777776655555554322 1122


Q ss_pred             HHHHH-----HHHhhccC---CCcccccc---hh-------hcCc--cchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHH
Q psy14015        166 AELRS-----HFRNLCQD---DTPMQQGH---VW-------ECGS--GVKAELRSHFRNLCQDD-TPMVRRAAAGKLGEL  224 (318)
Q Consensus       166 ~~l~~-----~~~~l~~~---~~~~vR~~---v~-------~~~~--~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l  224 (318)
                      .++.+     +|.+...+   .+++-|..   |.       .+|+  ....+++.+.+..++|+ .|..|.=++-+||.+
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            22221     11111111   11222220   00       1121  34567888889999985 799999999999999


Q ss_pred             HHHhchh-hh--HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC----Chh--------------hhhHhhHH----H
Q psy14015        225 AKVVEVD-YL--KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL----SQS--------------DVEQLVMP----T  279 (318)
Q Consensus       225 ~~~~~~~-~~--~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l----~~~--------------~~~~~l~p----~  279 (318)
                      =+.+... |.  ....-..+..+++|+.++||.+++.+++-+....    ...              ...+.+++    .
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            8765321 11  1123334557889999999999999999998763    111              11233444    6


Q ss_pred             HHHhccccccccccCCCCCCchhhHHhhhhhhhhhhc
Q psy14015        280 LRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRH  316 (318)
Q Consensus       280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~~  316 (318)
                      +..+++|          -.|-||-.++...+=.-.+|
T Consensus       708 ll~~vsd----------gsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  708 LLALVSD----------GSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             HHHHHhc----------cchHHHHHHHHHHHHHHHhh
Confidence            7888999          88888888876665444444

>KOG1059|consensus

Probab=97.28  E-value=0.019  Score=56.42  Aligned_cols=220  Identities=17%  Similarity=0.169  Sum_probs=133.8

Q ss_pred             CCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc
Q psy14015          8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE   86 (318)
Q Consensus         8 ~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~   86 (318)
                      ||-.=+-..-++..|++.-+.+|-.++..+..+..... + ......|-|.+-++|+++ |..+|..++.++++.-  +.
T Consensus       139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-e-Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--Pk  214 (877)
T KOG1059|consen  139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-E-ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQ  214 (877)
T ss_pred             chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-H-hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--Cc
Confidence            34444445677889999999999999999999964432 2 122345677777889888 9999999999998632  22


Q ss_pred             chhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015         87 YVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK  165 (318)
Q Consensus        87 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~  165 (318)
                      ..=.+-|.|..++. ..+..+=.+-++.++.+...-+.  ....++|-+.++.++.      +|-.++-+++..+-..  
T Consensus       215 nyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT------~AmSLlYECvNTVVa~--  284 (877)
T KOG1059|consen  215 NYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMEST------VAMSLLYECVNTVVAV--  284 (877)
T ss_pred             ccccccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhh------HHHHHHHHHHHHheee--
Confidence            22237788877754 34555555555555555433221  2223677777776654      2322322222111000  


Q ss_pred             HHHHHHHHhhccCCCcccccchhhcCccchH---HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHH
Q psy14015        166 AELRSHFRNLCQDDTPMQQGHVWECGSGVKA---ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFV  242 (318)
Q Consensus       166 ~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~---~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~  242 (318)
                              .+....            ++-..   --+.-+..++.|.+++.|+-..-++++++..-  .+..+....++.
T Consensus       285 --------s~s~g~------------~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~kdlIl  342 (877)
T KOG1059|consen  285 --------SMSSGM------------SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAHKDLIL  342 (877)
T ss_pred             --------hhccCC------------CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHhHHHHH
Confidence                    000000            00111   12344566788999999999999999988753  223455666777


Q ss_pred             HhhcCCcHHHHHHHHHHHHHH
Q psy14015        243 NLAQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       243 ~ll~D~~~~VR~aa~~~l~~l  263 (318)
                      +.+.|.+..+|-.|..-+..+
T Consensus       343 rcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  343 RCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             HHhccCCchhHHHHHHHHHHH
Confidence            888999999998766554443

>KOG1062|consensus

Probab=97.17  E-value=0.018  Score=57.24  Aligned_cols=192  Identities=17%  Similarity=0.166  Sum_probs=116.4

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhh
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSR  146 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR  146 (318)
                      |-..|.-+|+.++    .++....+.|....+++..++.||.+|+-+...+....+.  ..+++++-..+++++....|=
T Consensus       123 vVglAL~alg~i~----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hGVL  196 (866)
T KOG1062|consen  123 VVGLALCALGNIC----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHGVL  196 (866)
T ss_pred             ehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCcee
Confidence            4455555666554    4667788999999999999999999999999999988764  355688888888888877777


Q ss_pred             hhhhhhhhhhccccCcc---hHH---HHHHHHHhhc-cCCCcc--ccc--------ch----hhcCc---cchHH-----
Q psy14015        147 TSACGLFSVCYPRVTAG---VKA---ELRSHFRNLC-QDDTPM--QQG--------HV----WECGS---GVKAE-----  197 (318)
Q Consensus       147 ~~a~~~l~~~~~~~~~~---~~~---~l~~~~~~l~-~~~~~~--vR~--------~v----~~~~~---~~~~~-----  197 (318)
                      .++..++-.++..-.+.   ++.   .+...++++. +-+.|+  |.+        +.    ..+|+   +..+.     
T Consensus       197 ~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiL  276 (866)
T KOG1062|consen  197 IAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDIL  276 (866)
T ss_pred             eeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            77766666665542221   111   2222233332 122222  111        00    01221   11111     


Q ss_pred             -----------------HHHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhc-----------------hhhhHhhHHHHHH
Q psy14015        198 -----------------LRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVE-----------------VDYLKTDIIPMFV  242 (318)
Q Consensus       198 -----------------ll~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~-----------------~~~~~~~llp~l~  242 (318)
                                       |-.++...+ =+++...|..|+..||+|...-.                 .+...+..-..+.
T Consensus       277 aqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIl  356 (866)
T KOG1062|consen  277 AQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTIL  356 (866)
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHH
Confidence                             222222222 24566677777777777764311                 1223456677888


Q ss_pred             HhhcCCcHHHHHHHHHHHHHHH
Q psy14015        243 NLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       243 ~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      ..++||+..+|+.+.+-.-.+.
T Consensus       357 eCL~DpD~SIkrralELs~~lv  378 (866)
T KOG1062|consen  357 ECLKDPDVSIKRRALELSYALV  378 (866)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHh
Confidence            8999999999998887654444

>KOG1078|consensus

Probab=97.13  E-value=0.013  Score=58.15  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      ....+..-=++..||.+|..+|.+|+  .+.+.....+...+++.+.|++..||..|-.++..+.
T Consensus       469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            33334444478999999999999999  4555566778889999999999999999988777666

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.11  E-value=0.011  Score=57.49  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015        194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  273 (318)
Q Consensus       194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~  273 (318)
                      ..+..+..++.||.|++..||..|++.|+.+|..  .......+..+|.+|++..+...+.++-.++..+...    +..
T Consensus        56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~----d~k  129 (556)
T PF05918_consen   56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ----DPK  129 (556)
T ss_dssp             GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----HH
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc----CcH
Confidence            4567789999999999999999999999999973  2223578889999999988888888888888877743    222


Q ss_pred             HhhHHHHHHhcc--ccccccccCCCCCCchhhHHhhhhhhhh
Q psy14015        274 QLVMPTLRQCSV--QIVDHKFCPNNEFHPLELHVISATTLRL  313 (318)
Q Consensus       274 ~~l~p~l~~ll~--D~~~~~~~~~~~~~~Vr~~~i~~~~~~~  313 (318)
                      ..|-..+-+++.  .          .+..||..+++-+...+
T Consensus       130 ~tL~~lf~~i~~~~~----------~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen  130 GTLTGLFSQIESSKS----------GDEQVRERALKFLREKL  161 (556)
T ss_dssp             HHHHHHHHHHH---H----------S-HHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhccc----------CchHHHHHHHHHHHHHH
Confidence            334444444441  2          45678888887665443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1967|consensus

Probab=97.05  E-value=0.008  Score=60.47  Aligned_cols=153  Identities=16%  Similarity=0.148  Sum_probs=113.9

Q ss_pred             ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh---hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~---~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      +.+...+.|++.+........+|.--+..|..+.+..+.+.+.   ..++|.+.+-+.=++..+|.++...++......+
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            4455668899988888666788888888888888888875533   3488888877776778888888777765443322


Q ss_pred             cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC---HHHHHHHHHhhHHHHHHhchhh---hHh
Q psy14015        162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT---PMVRRAAAGKLGELAKVVEVDY---LKT  235 (318)
Q Consensus       162 ~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~---~~VR~~aa~~L~~l~~~~~~~~---~~~  235 (318)
                      .-..                           ..-+.++|.+..+..|++   --||..|.++|+.+........   ...
T Consensus       942 tL~t---------------------------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~  994 (1030)
T KOG1967|consen  942 TLQT---------------------------EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP  994 (1030)
T ss_pred             ccch---------------------------HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH
Confidence            2111                           122668899999988877   5699999999999999665432   346


Q ss_pred             hHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        236 DIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       236 ~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .++..+..-+.|+..-||.-|+.+=+...
T Consensus       995 ~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  995 LVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            78888889999999999999987755443

>KOG2933|consensus

Probab=96.93  E-value=0.032  Score=49.78  Aligned_cols=142  Identities=16%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      +.+.++.|.|++|..-...+..+..++.+-..  .....+++.++.+-+.+... |-++++..+..+....+.. ..+.+
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~l  168 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQEL  168 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            44567788899999888777777776654221  11345667777777787766 8889998888887655432 22222


Q ss_pred             chHHhhh---ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         92 LPPLESL---ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        92 lp~l~~l---~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      -+.+..|   ..+++..||+.|-.+|..+..+..+......++|..    ...+.++|..++..++.+..+++
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~----~~~n~r~r~~a~~~~~~~v~rl~  237 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL----QHSNPRVRAKAALCFSRCVIRLG  237 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH----hhhchhhhhhhhccccccceecc
Confidence            2333333   356678999999999999999999887666666664    44567888888888776666554

>KOG1248|consensus

Probab=96.91  E-value=0.17  Score=52.58  Aligned_cols=204  Identities=11%  Similarity=0.057  Sum_probs=128.5

Q ss_pred             cCChHH-HHHHHHHHHcccccCcCcccc----hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH---HhhhHHH
Q psy14015         61 IYDEDE-VLLALAEQLGTFTPNVGGPEY----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP  132 (318)
Q Consensus        61 ~~D~~~-VR~~aa~~L~~l~~~~~~~~~----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~ilp  132 (318)
                      .+.+.. +++-+-+.|..+...-.++.+    ...+...+..=..+.....|..+..++..+.+.++.+.   +...|-.
T Consensus       663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            333344 999999999988775222222    23333333333455567888999999999999888432   2333444


Q ss_pred             HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH
Q psy14015        133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM  212 (318)
Q Consensus       133 ~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~  212 (318)
                      .+..+ ++.+...|.+|-.+|-.+...          ..+.....+. +          +..-+..++.+...+-.+..+
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i----------~~~~d~g~e~-~----------~~~lnefl~~Isagl~gd~~~  800 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGAI----------QSSLDDGNEP-A----------SAILNEFLSIISAGLVGDSTR  800 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHHH----------Hhhhcccccc-h----------HHHHHHHHHHHHhhhcccHHH
Confidence            44445 777788888887766544320          0000111000 0          012234455555444455566


Q ss_pred             HHHHHHHhhHHHHHHh---chhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccc
Q psy14015        213 VRRAAAGKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQ  286 (318)
Q Consensus       213 VR~~aa~~L~~l~~~~---~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D  286 (318)
                      ++..-+-+++.+...+   ..+.....++..+...+...++.+|.+|+..+.-+...++..-..   +.|+|.++.+++|
T Consensus       801 ~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d  880 (1176)
T KOG1248|consen  801 VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD  880 (1176)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence            6655455555555433   234456889999999999999999999999999999888886543   4589999999999

>KOG0168|consensus

Probab=96.89  E-value=0.027  Score=56.46  Aligned_cols=187  Identities=18%  Similarity=0.174  Sum_probs=123.9

Q ss_pred             hHHHHHHHhcCc-cHHHHHHHHHhHHHHHHhhChHh-----HhhchhhhhhhhcCChH-H-HHHHHHHHHcccccCcCcc
Q psy14015         14 PIAVLIDELKNE-DVQLRLNSIKKLSTIALALGQER-----TRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus        14 ~i~~l~~~l~~~-~~~~R~~~~~~L~~ia~~lg~~~-----~~~~llp~l~~l~~D~~-~-VR~~aa~~L~~l~~~~~~~   85 (318)
                      .+.+++..|+.+ ++...++++..|.++... |.+.     -.+.++|.|..+++++. . +.--|++.|..+++.+...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            688899999877 787778888888887643 4332     35679999999998854 3 9999999999998866432


Q ss_pred             ---cchhccchHH-hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         86 ---EYVHCLLPPL-ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        86 ---~~~~~llp~l-~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                         .+-+..+|+| ..|+.=+.-+|-+.++++|-+|....+..-...--+..+..++.==+..+...|+.+...+|..+.
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               1223466765 556677788999999999999998776642221111111111110112344445444444444433


Q ss_pred             cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015        162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV  228 (318)
Q Consensus       162 ~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~  228 (318)
                      ..--                           .+--+.+|.+..+++..+..+=..++-+|..++..+
T Consensus       327 sd~f---------------------------~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  327 SDEF---------------------------HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             Cccc---------------------------hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence            2100                           123457899999999888888888888888888765

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.82  E-value=0.0076  Score=57.98  Aligned_cols=131  Identities=15%  Similarity=0.164  Sum_probs=88.0

Q ss_pred             CCCCCCCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccC
Q psy14015          6 SAPDDSLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPN   81 (318)
Q Consensus         6 ~~~~~~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~   81 (318)
                      .++.+-..| +-.++..+.+.+..+|...++-|..+...+|+  +...+-|+..+.+-+-|-+. ||..|...|..+...
T Consensus        83 peg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~  162 (885)
T COG5218          83 PEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM  162 (885)
T ss_pred             hhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence            333344444 55677888899999999999999999888886  44556666666665666555 999999999998764


Q ss_pred             cCcccchhccchHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhh
Q psy14015         82 VGGPEYVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTS  148 (318)
Q Consensus        82 ~~~~~~~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~  148 (318)
                      -+.++  ..+..++..+ -.||.++||..|+-.+.  .        .+.-.|.+.+-+.|.+-..|..
T Consensus       163 ~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~--v--------dnsT~p~IlERarDv~~anRr~  218 (885)
T COG5218         163 ELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNIS--V--------DNSTYPCILERARDVSGANRRM  218 (885)
T ss_pred             cCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHee--e--------CCCcchhHHHHhhhhhHHHHHH
Confidence            44432  2344455544 46889999998763321  1        1235666777777766555543

>KOG2025|consensus

Probab=96.78  E-value=0.12  Score=50.97  Aligned_cols=220  Identities=14%  Similarity=0.026  Sum_probs=127.8

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhC--ChhHHhhhHHHHHHHhhcCCCch
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH--SPHDLEAHFVPLVQRLASGDWFT  144 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~ilp~~~~l~~d~~~~  144 (318)
                      |-..+++-...+-..-...+..+.++..+......++..||......+..+....  -++++.+.+...+..-+.|..+.
T Consensus        62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~  141 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN  141 (892)
T ss_pred             HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch
Confidence            4444444444433211223444555555555567778999999999888888733  34667777777777778999999


Q ss_pred             hhhhhhhhhhhhccccC-cc--hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH-h
Q psy14015        145 SRTSACGLFSVCYPRVT-AG--VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG-K  220 (318)
Q Consensus       145 vR~~a~~~l~~~~~~~~-~~--~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~-~  220 (318)
                      ||.-|+..|..+=..-. ++  ++..++.   .+-.|.+++||+.+..-. .....-+|....-+.|-+..+|+.+.. .
T Consensus       142 VRiqAv~aLsrlQ~d~~dee~~v~n~l~~---liqnDpS~EVRRaaLsnI-~vdnsTlp~IveRarDV~~anRrlvY~r~  217 (892)
T KOG2025|consen  142 VRIQAVLALSRLQGDPKDEECPVVNLLKD---LIQNDPSDEVRRAALSNI-SVDNSTLPCIVERARDVSGANRRLVYERC  217 (892)
T ss_pred             HHHHHHHHHHHHhcCCCCCcccHHHHHHH---HHhcCCcHHHHHHHHHhh-ccCcccchhHHHHhhhhhHHHHHHHHHHh
Confidence            99999888876532211 11  2222222   233566677777533211 011223577777777777776665544 3


Q ss_pred             hHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH-HHhhCChhhhhHhhHHHHHHhccccccccccCCCCCC
Q psy14015        221 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS-IASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFH  299 (318)
Q Consensus       221 L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~-l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~  299 (318)
                      ++++ .. .... ...-+-.++..++|.+..||+++..+|.. +..+.     ...++..+ +.|+=         ....
T Consensus       218 lpki-d~-r~ls-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL-~~ldv---------snss  279 (892)
T KOG2025|consen  218 LPKI-DL-RSLS-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELL-ERLDV---------SNSS  279 (892)
T ss_pred             hhhh-hh-hhhh-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHH-HHhcc---------ccch
Confidence            3333 21 1111 23455677888899999999999886543 33221     12233333 33332         1344


Q ss_pred             chhhHHhhh
Q psy14015        300 PLELHVISA  308 (318)
Q Consensus       300 ~Vr~~~i~~  308 (318)
                      +|+..++++
T Consensus       280 ~vavk~lea  288 (892)
T KOG2025|consen  280 EVAVKALEA  288 (892)
T ss_pred             HHHHHHHHH
Confidence            888888765

>KOG1967|consensus

Probab=96.74  E-value=0.017  Score=58.29  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCc---HHHHHHHHHHHHHHHhhCCh
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQ---DSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~---~~VR~aa~~~l~~l~~~l~~  269 (318)
                      ...++|.+++.+.=++..||-.+...++.+....+.  ......++|.+..+.+|++   ..||..|..+++.+...++.
T Consensus       907 ~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~  986 (1030)
T KOG1967|consen  907 FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT  986 (1030)
T ss_pred             hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC
Confidence            367899999999989999999999999888765442  1224679999999999998   68999999999999998877


Q ss_pred             hh---hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015        270 SD---VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATT  310 (318)
Q Consensus       270 ~~---~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~  310 (318)
                      ..   +...++..+.+.|.|          +-.-||-.++.+-+
T Consensus       987 ~~l~~fr~~Vl~al~k~LdD----------kKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  987 KSLLSFRPLVLRALIKILDD----------KKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             cccccccHHHHHHhhhccCc----------HHHHHHHHHHHHhh
Confidence            64   345699999999999          77777777776544

>KOG1058|consensus

Probab=96.73  E-value=0.14  Score=50.91  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=25.7

Q ss_pred             CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHH
Q psy14015          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTI   40 (318)
Q Consensus         7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~i   40 (318)
                      .|+-....=..+++.|.+.+.+++..+++++-.+
T Consensus        14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~   47 (948)
T KOG1058|consen   14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIAL   47 (948)
T ss_pred             CCcccccchHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3444445556788899999999999999887655

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.72  E-value=0.078  Score=48.09  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhc
Q psy14015         97 SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLC  176 (318)
Q Consensus        97 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~  176 (318)
                      .-...++..||+.|+++++..+-. +++. ....++.+.+.++.+...+|..|+..+..++..-+...       +....
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Ll-d~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~-------~~~~~  104 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLL-DKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI-------FDSES  104 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHh-ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh-------ccchh
Confidence            344556678888888887766643 3322 23345555554444466777777666543322111100       00000


Q ss_pred             cCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHH--Hhch-hhhHhhHHHHHHHhhcCCcHHHH
Q psy14015        177 QDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK--VVEV-DYLKTDIIPMFVNLAQDEQDSVR  253 (318)
Q Consensus       177 ~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~--~~~~-~~~~~~llp~l~~ll~D~~~~VR  253 (318)
                      ...           .+.....+...+.+.+.++++++|..+++.+.++.-  .+.. +.+...++-.+.+=...++..+|
T Consensus       105 ~~~-----------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen  105 DND-----------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             ccC-----------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHH
Confidence            000           012346788999999999999999999999999774  3334 33444444433333344455666


Q ss_pred             HHHHHHHHHHHhhCC--hhhhhHhhHHHHHHhccc
Q psy14015        254 LLAVEACVSIASLLS--QSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       254 ~aa~~~l~~l~~~l~--~~~~~~~l~p~l~~ll~D  286 (318)
                      +...--+..++..-.  ++...+..+|.+..+.+.
T Consensus       174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            665544444443211  223344566666666655

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.63  E-value=0.027  Score=56.32  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC---cHHHHHHHHHHHHHHHhhCChh
Q psy14015        194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE---QDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~---~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      ..+.+...+....+..+...+..++++||.++.        ...+|.+...+.+.   ...+|.+|+.++..+....   
T Consensus       487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~---  555 (618)
T PF01347_consen  487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC---  555 (618)
T ss_dssp             GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC---
Confidence            344555555555666777888888888887764        34666666666666   6688888887777664332   


Q ss_pred             hhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        271 DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       271 ~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                        -..+.+.+++...|        ..++++||+.+.
T Consensus       556 --~~~v~~~l~~I~~n--------~~e~~EvRiaA~  581 (618)
T PF01347_consen  556 --PEKVREILLPIFMN--------TTEDPEVRIAAY  581 (618)
T ss_dssp             --HHHHHHHHHHHHH---------TTS-HHHHHHHH
T ss_pred             --cHHHHHHHHHHhcC--------CCCChhHHHHHH
Confidence              23455566666666        335666776654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1517|consensus

Probab=96.60  E-value=0.1  Score=53.67  Aligned_cols=188  Identities=14%  Similarity=0.087  Sum_probs=117.5

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccC---cCcccchhccchHHhhhccC-c--hhHHHHHHHHHHHHHHhhCCh
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPN---VGGPEYVHCLLPPLESLATV-E--ETVVRDKAVESLRLISAQHSP  123 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~---~~~~~~~~~llp~l~~l~~d-~--~~~VR~~a~~~l~~l~~~~~~  123 (318)
                      --+.|++.+|++.+.. .|-.++-...++...   ...+-+++.....+.+.+.+ +  +++-|.-|+-.|..|+..+..
T Consensus       511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l  590 (1387)
T KOG1517|consen  511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL  590 (1387)
T ss_pred             cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence            3478999999988654 777766655544321   00000111111122222222 1  358899999999999987654


Q ss_pred             hH--H-hhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015        124 HD--L-EAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR  199 (318)
Q Consensus       124 ~~--~-~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll  199 (318)
                      .+  . ...++.+....++|+ .+-.|.=+|-.||++-......          ..+                -.+....
T Consensus       591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A----------rw~----------------G~r~~Ah  644 (1387)
T KOG1517|consen  591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA----------RWS----------------GRRDNAH  644 (1387)
T ss_pred             hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh----------hhc----------------cccccHH
Confidence            33  2 234777777888885 5667766666666553332211          000                1224456


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHh----ch-------------h-hhHhhHHH----HHHHhhcCCcHHHHHHHH
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVV----EV-------------D-YLKTDIIP----MFVNLAQDEQDSVRLLAV  257 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~----~~-------------~-~~~~~llp----~l~~ll~D~~~~VR~aa~  257 (318)
                      ..+..++.|+.++||.+|..+||.+..+.    ..             + ...+++++    .+..+.+|.++-||...+
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            77888899999999999999999998752    11             0 11233444    566778999999999988


Q ss_pred             HHHHHHH
Q psy14015        258 EACVSIA  264 (318)
Q Consensus       258 ~~l~~l~  264 (318)
                      .++..+.
T Consensus       725 v~ls~~~  731 (1387)
T KOG1517|consen  725 VALSHFV  731 (1387)
T ss_pred             HHHHHHH
Confidence            8887766

>KOG1943|consensus

Probab=96.55  E-value=0.2  Score=51.66  Aligned_cols=143  Identities=18%  Similarity=0.123  Sum_probs=91.4

Q ss_pred             HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh
Q psy14015        126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL  205 (318)
Q Consensus       126 ~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l  205 (318)
                      +.+.++..+.+.++|....+|++||+.+|++..+++++.-..                          +-+..+..|...
T Consensus       338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~--------------------------vi~svid~~~p~  391 (1133)
T KOG1943|consen  338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ--------------------------VIGSVIDLFNPA  391 (1133)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH--------------------------HHHHHHHhcCcC
Confidence            334567777778899999999999999999988887532111                          122333322222


Q ss_pred             hcCCCHHHHHHHHHhhHHHHHH-hchhhhHhhHHHHHHHhhcCCc--------HHHHHHHHHHHHHHHhhCChhhhh---
Q psy14015        206 CQDDTPMVRRAAAGKLGELAKV-VEVDYLKTDIIPMFVNLAQDEQ--------DSVRLLAVEACVSIASLLSQSDVE---  273 (318)
Q Consensus       206 ~~D~~~~VR~~aa~~L~~l~~~-~~~~~~~~~llp~l~~ll~D~~--------~~VR~aa~~~l~~l~~~l~~~~~~---  273 (318)
                      -.|..|+   .++-+|++++.- +-......+++|++.+.+.-..        .+||-+++-.+=.++..-.+....   
T Consensus       392 e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l  468 (1133)
T KOG1943|consen  392 EDDSAWH---GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL  468 (1133)
T ss_pred             CchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH
Confidence            2344565   888899999852 1122235788997776664333        379999999988888877766433   


Q ss_pred             HhhHH-HHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        274 QLVMP-TLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       274 ~~l~p-~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      +.+.+ .+...+-|          .+-++|-.+..
T Consensus       469 ~~L~s~LL~~AlFD----------revncRRAAsA  493 (1133)
T KOG1943|consen  469 QSLASALLIVALFD----------REVNCRRAASA  493 (1133)
T ss_pred             HHHHHHHHHHHhcC----------chhhHhHHHHH
Confidence            33444 34456777          66666655543

>KOG1077|consensus

Probab=96.51  E-value=0.32  Score=48.14  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC
Q psy14015        195 KAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS  268 (318)
Q Consensus       195 ~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~  268 (318)
                      +.+ ....+..++ +.+..||+-++.-|-.++..=..+.+.++++.++..    .++.+|.-.+--+.-+++.+-
T Consensus       367 K~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~t----Ad~sireeivlKvAILaEKyA  436 (938)
T KOG1077|consen  367 KKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET----ADYSIREEIVLKVAILAEKYA  436 (938)
T ss_pred             HHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHhc
Confidence            444 445555555 788888888888888888654444455555555444    566777776666666665543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.023  Score=54.63  Aligned_cols=80  Identities=19%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             HHHHHHHh-hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhh
Q psy14015        198 LRSHFRNL-CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV  276 (318)
Q Consensus       198 ll~~l~~l-~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l  276 (318)
                      ++..++.. .+|.+..||++|.-+||-++..   +  ...++..+.-|.+..+.+||...+-+++-.|..-|...+    
T Consensus       552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D--~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a----  622 (926)
T COG5116         552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D--RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA----  622 (926)
T ss_pred             hHhhhheeecccCchHHHHHHHHheeeeEec---C--cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH----
Confidence            34444444 6799999999999999988752   1  233555777777888999999999999999987777654    


Q ss_pred             HHHHHHhccc
Q psy14015        277 MPTLRQCSVQ  286 (318)
Q Consensus       277 ~p~l~~ll~D  286 (318)
                      +..+.++..|
T Consensus       623 ~diL~~L~~D  632 (926)
T COG5116         623 TDILEALMYD  632 (926)
T ss_pred             HHHHHHHhhC
Confidence            4557778888

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.46  E-value=0.026  Score=54.47  Aligned_cols=85  Identities=19%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCCc
Q psy14015         67 VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWF  143 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~~  143 (318)
                      ||.-....|..+...++.  +...+.++--+..-+-|.++-||..|+.+|.++.+.-..+.  +.+..+++. +.+||+-
T Consensus       107 VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~  184 (885)
T COG5218         107 VRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSD  184 (885)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHH
Confidence            676666666666555553  23333344445555678889999999999988876543321  122223332 4578888


Q ss_pred             hhhhhhhhhh
Q psy14015        144 TSRTSACGLF  153 (318)
Q Consensus       144 ~vR~~a~~~l  153 (318)
                      .||..|...+
T Consensus       185 EVRr~allni  194 (885)
T COG5218         185 EVRRLALLNI  194 (885)
T ss_pred             HHHHHHHHHe
Confidence            8888875443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.30  E-value=0.17  Score=50.68  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=54.0

Q ss_pred             HHHHHHHHhhcCC---CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015        197 ELRSHFRNLCQDD---TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  273 (318)
Q Consensus       197 ~ll~~l~~l~~D~---~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~  273 (318)
                      ..++.+..++.+.   ...+|.+|+++|..++... ++.+.+.++|+|.+-..|+  .||.+|...+...-.   +   .
T Consensus       521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~--EvRiaA~~~lm~~~P---~---~  591 (618)
T PF01347_consen  521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDP--EVRIAAYLILMRCNP---S---P  591 (618)
T ss_dssp             GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-H--HHHHHHHHHHHHT---------H
T ss_pred             hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCCh--hHHHHHHHHHHhcCC---C---H
Confidence            3567777777766   6899999999999885443 3345566666666655544  499999877665421   1   1


Q ss_pred             HhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        274 QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       274 ~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ..+..+...+-.|          ++++|+-.+.
T Consensus       592 ~~l~~i~~~l~~E----------~~~QV~sfv~  614 (618)
T PF01347_consen  592 SVLQRIAQSLWNE----------PSNQVASFVY  614 (618)
T ss_dssp             HHHHHHHHHHTT-----------S-HHHHHHHH
T ss_pred             HHHHHHHHHHhhC----------chHHHHHHHH
Confidence            2223333334466          6677776665

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG4413|consensus

Probab=96.27  E-value=0.24  Score=44.86  Aligned_cols=200  Identities=15%  Similarity=0.164  Sum_probs=111.3

Q ss_pred             hHhhchhhhhhh-hcCChHHHHHHHHHHHcccccCcCcccc-------hhccchHHhhhccCchhHHHHHHHHHHHHHHh
Q psy14015         48 RTRGELIPFLTE-TIYDEDEVLLALAEQLGTFTPNVGGPEY-------VHCLLPPLESLATVEETVVRDKAVESLRLISA  119 (318)
Q Consensus        48 ~~~~~llp~l~~-l~~D~~~VR~~aa~~L~~l~~~~~~~~~-------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~  119 (318)
                      ....+++|-+.. +..|+..|+.-++++++-+.+....+..       ...++|.+......++++|-.+|.+++..++-
T Consensus        78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial  157 (524)
T KOG4413|consen   78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL  157 (524)
T ss_pred             hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            355668888875 5566666999999998888765443222       24477888888888999999999999999875


Q ss_pred             hCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015        120 QHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR  199 (318)
Q Consensus       120 ~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll  199 (318)
                      .-..      +--++.+-..|+ .+.|.-|+..        ++-.|....+.+.++.+-. |++      ..+..++-++
T Consensus       158 fpaa------leaiFeSellDd-lhlrnlaakc--------ndiaRvRVleLIieifSiS-pes------aneckkSGLl  215 (524)
T KOG4413|consen  158 FPAA------LEAIFESELLDD-LHLRNLAAKC--------NDIARVRVLELIIEIFSIS-PES------ANECKKSGLL  215 (524)
T ss_pred             cHHH------HHHhcccccCCh-HHHhHHHhhh--------hhHHHHHHHHHHHHHHhcC-HHH------HhHhhhhhHH
Confidence            4221      111111111222 1222211110        1111211112222221111 110      0012345567


Q ss_pred             HHHHHhhcC-CCHHHHHHHHHhhHHHHHHh-chhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015        200 SHFRNLCQD-DTPMVRRAAAGKLGELAKVV-EVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV  272 (318)
Q Consensus       200 ~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~-~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~  272 (318)
                      ..+..=++- ++-.||.+++.-..+++..- |.+.     +.+.+-.+....-.||-...|     +++.+.++||++..
T Consensus       216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr-----almgfgkffgkeai  290 (524)
T KOG4413|consen  216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR-----ALMGFGKFFGKEAI  290 (524)
T ss_pred             HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH-----HHHHHHHHhcchHH
Confidence            666544444 78899999999999988653 3332     223333344444567765554     46778888888765


Q ss_pred             hH
Q psy14015        273 EQ  274 (318)
Q Consensus       273 ~~  274 (318)
                      .+
T Consensus       291 md  292 (524)
T KOG4413|consen  291 MD  292 (524)
T ss_pred             hh
Confidence            43

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.21  E-value=0.17  Score=45.92  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=71.4

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH-----------HhhhHHHHHH
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD-----------LEAHFVPLVQ  135 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-----------~~~~ilp~~~  135 (318)
                      ||..+.+-||-++- +.. ......++++.+.+..+++.||..|+.++..+.-..+.+.           ....++..+.
T Consensus        43 vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~  120 (298)
T PF12719_consen   43 VRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILT  120 (298)
T ss_pred             HHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHH
Confidence            55555555554432 222 2222233333333333355555555555555554443211           1123555555


Q ss_pred             HhhcCCCchhhhhhhhhhhhhc--cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHH
Q psy14015        136 RLASGDWFTSRTSACGLFSVCY--PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMV  213 (318)
Q Consensus       136 ~l~~d~~~~vR~~a~~~l~~~~--~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~V  213 (318)
                      +.+.+.+..+|..|++.+.|++  .++.+  ...                          .-+.++-.+..-.+.++.++
T Consensus       121 ~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--~~~--------------------------vL~~Lll~yF~p~t~~~~~L  172 (298)
T PF12719_consen  121 KFLDSENPELQAIAVEGLCKLLLSGRISD--PPK--------------------------VLSRLLLLYFNPSTEDNQRL  172 (298)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHhcCCCCc--HHH--------------------------HHHHHHHHHcCcccCCcHHH
Confidence            5566656667777777776642  12221  000                          11122222222233445677


Q ss_pred             HHHHHHhhHHHHHHhc--hhhhHhhHHHHHHHhhcCCc
Q psy14015        214 RRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQ  249 (318)
Q Consensus       214 R~~aa~~L~~l~~~~~--~~~~~~~llp~l~~ll~D~~  249 (318)
                      |+....-|+.++..-.  ++.+.+..+|++..+.+.+.
T Consensus       173 rQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  173 RQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence            7766666666664221  23344556677776665443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=96.19  E-value=0.33  Score=49.03  Aligned_cols=257  Identities=17%  Similarity=0.190  Sum_probs=132.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-h-HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC--cccchh
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG-Q-ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG--GPEYVH   89 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~-~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~--~~~~~~   89 (318)
                      +.-+.+.|++++......++.-|..++-.-. . .-....++|-+.++++.+.+ ++..+.+.|.++.-.-.  ..-...
T Consensus       292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~  371 (708)
T PF05804_consen  292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL  371 (708)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence            4456677888888888877777777753211 1 11244678888888876655 88888888888863111  122234


Q ss_pred             ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhcccc------
Q psy14015         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRV------  160 (318)
Q Consensus        90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~------  160 (318)
                      .++|-+..++.|+  ..|..++..|..++..-...  ......+|.+.+++ ..+...+...++.++-.+...-      
T Consensus       372 GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm  449 (708)
T PF05804_consen  372 GLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLM  449 (708)
T ss_pred             CCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHH
Confidence            4788888888875  45566776666665421111  11123567776643 4344444443333322221100      


Q ss_pred             -------------CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHH
Q psy14015        161 -------------TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAK  226 (318)
Q Consensus       161 -------------~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~  226 (318)
                                   -...-..+...++.++...++..        ..+.+++.+ +...+.. +++   ...+.++|-+++
T Consensus       450 ~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k--------~~f~~~i~~-L~~~v~~~~~e---e~~vE~LGiLaN  517 (708)
T PF05804_consen  450 CEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLK--------ELFVDFIGD-LAKIVSSGDSE---EFVVECLGILAN  517 (708)
T ss_pred             HhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHH--------HHHHHHHHH-HHHHhhcCCcH---HHHHHHHHHHHh
Confidence                         00000111233333433332210        011222222 2333333 333   456666666665


Q ss_pred             Hh--chhh--hH--hhHHHHHHHhhcCCc--HHHHHHHHHHHHHHHhhCChhhh-----hHhhHHHHHHhccccc
Q psy14015        227 VV--EVDY--LK--TDIIPMFVNLAQDEQ--DSVRLLAVEACVSIASLLSQSDV-----EQLVMPTLRQCSVQIV  288 (318)
Q Consensus       227 ~~--~~~~--~~--~~llp~l~~ll~D~~--~~VR~aa~~~l~~l~~~l~~~~~-----~~~l~p~l~~ll~D~~  288 (318)
                      .-  +.+|  +.  ..++|.+.+++....  ..+.-.++-.++.++.   .+.+     ..-+++.+..+++.+.
T Consensus       518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~---d~~~A~lL~~sgli~~Li~LL~~kq  589 (708)
T PF05804_consen  518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS---DPECAPLLAKSGLIPTLIELLNAKQ  589 (708)
T ss_pred             cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC---CHHHHHHHHhCChHHHHHHHHHhhC
Confidence            32  2122  22  259999999986552  2454444445554442   2222     2346788888887755

>KOG0414|consensus

Probab=96.16  E-value=0.14  Score=53.24  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=96.6

Q ss_pred             ccchhccchHHhhhccC----chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhccc
Q psy14015         85 PEYVHCLLPPLESLATV----EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d----~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~  159 (318)
                      ......+.|++...+..    .++..+.+|.-+|+.+--. +.+.+.. -+|.+...+ +.+++.+|.+++-.+|.+.-+
T Consensus       914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces-~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHH-HHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            44556688888888743    3588999999888887654 2333333 566666544 588999999987777654333


Q ss_pred             cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhH-hhHH
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK-TDII  238 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~-~~ll  238 (318)
                      ++.                               .-+.--+.+..-+.|+++.||+.|..-++.+.-.   +-+. .--+
T Consensus       992 fpn-------------------------------lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql 1037 (1251)
T KOG0414|consen  992 FPN-------------------------------LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQL 1037 (1251)
T ss_pred             ccc-------------------------------ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccH
Confidence            321                               1122346778888999999999999998887642   1111 1245


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      +-....+.||+..+|..|-.-+..++
T Consensus      1038 ~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1038 SEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            66677889999999988764444433

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=95.95  E-value=0.1  Score=50.88  Aligned_cols=194  Identities=16%  Similarity=0.155  Sum_probs=107.3

Q ss_pred             hchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccchHHh--hhccC-----chhHHHHHHHHHHHHHHhhCCh
Q psy14015         51 GELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLE--SLATV-----EETVVRDKAVESLRLISAQHSP  123 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~--~l~~d-----~~~~VR~~a~~~l~~l~~~~~~  123 (318)
                      +.++|++..-++..++|-..+-..|+++...+.++...+.++.++.  ....+     -...+|.+-+..|..   ....
T Consensus       237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~A  313 (501)
T PF13001_consen  237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIA  313 (501)
T ss_pred             hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHH
Confidence            4567777766666666988888899988776767677777777766  21111     124555553333322   1111


Q ss_pred             hHHhhhHHHHHHHhhcCC--Cchhhhhhhhhh---hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHH
Q psy14015        124 HDLEAHFVPLVQRLASGD--WFTSRTSACGLF---SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAEL  198 (318)
Q Consensus       124 ~~~~~~ilp~~~~l~~d~--~~~vR~~a~~~l---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~l  198 (318)
                      ......++.++..-+.++  ..+.|..+..-+   .......+...-..+..                      .....+
T Consensus       314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~----------------------~i~~~g  371 (501)
T PF13001_consen  314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRP----------------------VILSQG  371 (501)
T ss_pred             HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHH----------------------HHHhcC
Confidence            112223444444444444  345555554444   32222222211111110                      011112


Q ss_pred             HHHHH-H---hhcCCCHHHHHHHHHhhHHHHHHhchhhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015        199 RSHFR-N---LCQDDTPMVRRAAAGKLGELAKVVEVDYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       199 l~~l~-~---l~~D~~~~VR~~aa~~L~~l~~~~~~~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      .|..- .   -....+...|..+..++|.++.....-.. .-.++..+...+.++..++|.++-++++.++..+..
T Consensus       372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~  447 (501)
T PF13001_consen  372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD  447 (501)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence            22220 0   01124678999999999999986543211 123666566666999999999999999999988854

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG0946|consensus

Probab=95.82  E-value=0.15  Score=51.00  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             HHHHHHHhcCcc-HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHHHHHHHHHHHcccccCcCcccchhcc
Q psy14015         15 IAVLIDELKNED-VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        15 i~~l~~~l~~~~-~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      |+++-+...+.. ...|+.|++.|...++..-.+--..-+-|++..+-.|  +.+.-..+...+..+..   ..+.    
T Consensus        24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~---~dd~----   96 (970)
T KOG0946|consen   24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS---HDDS----   96 (970)
T ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh---cCcc----
Confidence            777777777666 4679999999988876633332233466777666666  33444555555544432   1110    


Q ss_pred             chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (318)
Q Consensus        92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l  168 (318)
                       |    ...|+..    .+...-..|++.+-.   .+..+..+..+....+++||..++.++..++...+.+++..+
T Consensus        97 -~----~v~dds~----qsdd~g~~iae~fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l  161 (970)
T KOG0946|consen   97 -P----EVMDDST----QSDDLGLWIAEQFIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL  161 (970)
T ss_pred             -h----hhcccch----hhhHHHHHHHHHHHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence             0    0011111    111112222222211   122566666777777899999999999988877776666554

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.78  E-value=0.43  Score=47.40  Aligned_cols=29  Identities=17%  Similarity=-0.003  Sum_probs=17.0

Q ss_pred             HHHHHHHhhcCC----Cchhhhhhhhhhhhhcc
Q psy14015        130 FVPLVQRLASGD----WFTSRTSACGLFSVCYP  158 (318)
Q Consensus       130 ilp~~~~l~~d~----~~~vR~~a~~~l~~~~~  158 (318)
                      ++..+..|++++    ....|.+|.-.++.+..
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~  426 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVR  426 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence            444455566653    34577777777765543

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=95.77  E-value=0.039  Score=40.72  Aligned_cols=72  Identities=21%  Similarity=0.290  Sum_probs=53.5

Q ss_pred             cCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHH
Q psy14015        207 QDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL  280 (318)
Q Consensus       207 ~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l  280 (318)
                      .|+.|.+|..|+..++.++..++..  .....+.-.+.+.+.||+... ..--.++..+... |++.+...++|.+
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~-~t~YGAi~gL~~l-G~~~vr~~ilP~l   89 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL-GTHYGAIVGLSAL-GPEAVRALILPNL   89 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHH-HHHHHHHhhccCc
Confidence            5778999999999999999999853  356678888888899886522 2223444455544 7888888888865

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG0414|consensus

Probab=95.77  E-value=0.062  Score=55.71  Aligned_cols=129  Identities=15%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             ChhHHhhhHHHHHHHhhcCCC----chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHH
Q psy14015        122 SPHDLEAHFVPLVQRLASGDW----FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAE  197 (318)
Q Consensus       122 ~~~~~~~~ilp~~~~l~~d~~----~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~  197 (318)
                      ++..+...+.|++.+.+..+.    +..+.+|.-.|++++.--+                               .+.+.
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-------------------------------~fces  960 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-------------------------------EFCES  960 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-------------------------------HHHHH
Confidence            445566668899988886653    3455666555555432110                               12244


Q ss_pred             HHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh-Hh
Q psy14015        198 LRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE-QL  275 (318)
Q Consensus       198 ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~-~~  275 (318)
                      -+|.|+..++ .+++.||.++.-++|.++-.+..  +.+..-+.+..-+.|++..||+.|.-.+..+.-   .+..+ .=
T Consensus       961 ~l~llftimeksp~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL---ndmiKVKG 1035 (1251)
T KOG0414|consen  961 HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL---NDMIKVKG 1035 (1251)
T ss_pred             HHHHHHHHHhcCCCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH---hhhhHhcc
Confidence            4677776665 89999999999999999976642  334555778889999999999999887766542   11111 12


Q ss_pred             hHHHHHHhccc
Q psy14015        276 VMPTLRQCSVQ  286 (318)
Q Consensus       276 l~p~l~~ll~D  286 (318)
                      -++-+..|+.|
T Consensus      1036 ql~eMA~cl~D 1046 (1251)
T KOG0414|consen 1036 QLSEMALCLED 1046 (1251)
T ss_pred             cHHHHHHHhcC
Confidence            45667788888

>KOG1058|consensus

Probab=95.63  E-value=0.74  Score=46.03  Aligned_cols=275  Identities=14%  Similarity=0.109  Sum_probs=155.4

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch--
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP--   93 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp--   93 (318)
                      .+-..|+++|..+|=..++-|.++    ......+.++|.+.+.++.... ||+.|.-.+..+=+..      ..++|  
T Consensus       103 a~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~------~~L~pDa  172 (948)
T KOG1058|consen  103 AYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF------EHLIPDA  172 (948)
T ss_pred             HHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh------hhhcCCh
Confidence            344789999999999999988885    3333677789999999999888 9999887766553321      11221  


Q ss_pred             --HHhhh-ccCchhHHHHHHHHH------------HHHHHhhCC---hhH-----------------HhhhHHHHHHHhh
Q psy14015         94 --PLESL-ATVEETVVRDKAVES------------LRLISAQHS---PHD-----------------LEAHFVPLVQRLA  138 (318)
Q Consensus        94 --~l~~l-~~d~~~~VR~~a~~~------------l~~l~~~~~---~~~-----------------~~~~ilp~~~~l~  138 (318)
                        ++..+ ..+.++.-++.|.-.            +..-....+   +..                 ....++..+..++
T Consensus       173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL  252 (948)
T KOG1058|consen  173 PELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLL  252 (948)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHH
Confidence              22222 233333333322211            111111111   100                 0011333444466


Q ss_pred             cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcc-ccc----chhhcC---ccchHHHHHHHHHhhcCCC
Q psy14015        139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM-QQG----HVWECG---SGVKAELRSHFRNLCQDDT  210 (318)
Q Consensus       139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-vR~----~v~~~~---~~~~~~ll~~l~~l~~D~~  210 (318)
                      ...+..+++.|++.+..+..  .+..-+..++.+.++.-+.+.. |..    ...++.   +..-+.++--++..+..++
T Consensus       253 ~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~d  330 (948)
T KOG1058|consen  253 SSTSSAVIFEAAGTLVTLSN--DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPD  330 (948)
T ss_pred             hcCCchhhhhhcceEEEccC--CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccc
Confidence            66677888888776654321  1223334445555555443321 111    001111   1223445555677788899


Q ss_pred             HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHh
Q psy14015        211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA-------QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC  283 (318)
Q Consensus       211 ~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll-------~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~l  283 (318)
                      -+||+-+..-.-.++..-..    ++++..|++=.       +|.+..-|+...+++..++..|+.-  ...++|.++..
T Consensus       331 ldvr~Ktldi~ldLvssrNv----ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~--aatvV~~ll~f  404 (948)
T KOG1058|consen  331 LDVRSKTLDIALDLVSSRNV----EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV--AATVVSLLLDF  404 (948)
T ss_pred             ccHHHHHHHHHHhhhhhccH----HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH--HHHHHHHHHHH
Confidence            99998777665556543222    33444444332       4556677999999999999888653  45688999999


Q ss_pred             cccccccc--------ccCCCCCCchhhHHhhhh
Q psy14015        284 SVQIVDHK--------FCPNNEFHPLELHVISAT  309 (318)
Q Consensus       284 l~D~~~~~--------~~~~~~~~~Vr~~~i~~~  309 (318)
                      +.|.+..-        |-.--.+|+.|..+|.+.
T Consensus       405 isD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l  438 (948)
T KOG1058|consen  405 ISDSNEAAASDVLMFVREAIEKFPNLRASIIEKL  438 (948)
T ss_pred             hccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            99966321        111235677777777543

>KOG1077|consensus

Probab=95.59  E-value=2.1  Score=42.63  Aligned_cols=168  Identities=13%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhh----hhhccccCcchHHHHH
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGVKAELR  169 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l----~~~~~~~~~~~~~~l~  169 (318)
                      ++..|=.+.|-.||..|++-|..++...+.+++...++.++    ...++.+|.-.+--.    .+.....+|-+--.+ 
T Consensus       373 Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL----~tAd~sireeivlKvAILaEKyAtDy~WyVdviL-  447 (938)
T KOG1077|consen  373 IINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL----ETADYSIREEIVLKVAILAEKYATDYSWYVDVIL-  447 (938)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH----hhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHH-
Confidence            34444447788999999999999998877776555555544    334556665332222    223333344321111 


Q ss_pred             HHHHhhccCCCc-ccccchhhc---CccchHHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHHhchh--hhHhhHHHHH
Q psy14015        170 SHFRNLCQDDTP-MQQGHVWEC---GSGVKAELRSHFRNLCQDDT--PMVRRAAAGKLGELAKVVEVD--YLKTDIIPMF  241 (318)
Q Consensus       170 ~~~~~l~~~~~~-~vR~~v~~~---~~~~~~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l  241 (318)
                      + +..+++++.. +|-..|..+   .++...+.-..+.++++-+.  ...=++.++-||+++..+..+  .........+
T Consensus       448 q-Liriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsll  526 (938)
T KOG1077|consen  448 Q-LIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLL  526 (938)
T ss_pred             H-HHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHH
Confidence            1 1122333321 111111110   12233333344455555433  345567777778877765432  1122344455


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        242 VNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       242 ~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      -.-+.-.+...|.....+...+...+
T Consensus       527 h~K~~~~s~~tr~lLLtTyiKl~nl~  552 (938)
T KOG1077|consen  527 HEKLHLCSPVTRALLLTTYIKLINLF  552 (938)
T ss_pred             HHHhccCChhHHHHHHHHHHHHHhhC
Confidence            55555556666777777777766655

>KOG4535|consensus

Probab=95.53  E-value=0.13  Score=48.66  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHH-----HHHHhhcCCcHHHHHHHHHHHHHHHhh----CChhhhhHhh
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIP-----MFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLV  276 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp-----~l~~ll~D~~~~VR~aa~~~l~~l~~~----l~~~~~~~~l  276 (318)
                      -.+.+||.++..+||.+.+++.+  +....+++.     ....-......-||..++.+++++.+.    +....-...+
T Consensus       495 Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~  574 (728)
T KOG4535|consen  495 ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQA  574 (728)
T ss_pred             hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHH
Confidence            34567777777777777776531  001111111     111112223446777777777777642    2222234567


Q ss_pred             HHHHHHhccc
Q psy14015        277 MPTLRQCSVQ  286 (318)
Q Consensus       277 ~p~l~~ll~D  286 (318)
                      +|.+..++.|
T Consensus       575 F~~L~~Lv~~  584 (728)
T KOG4535|consen  575 FNALTSLVTS  584 (728)
T ss_pred             HHHHHHHHHH
Confidence            7777777777

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.44  E-value=1.4  Score=43.78  Aligned_cols=112  Identities=16%  Similarity=0.183  Sum_probs=80.8

Q ss_pred             HHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCH
Q psy14015        132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP  211 (318)
Q Consensus       132 p~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~  211 (318)
                      ..+.+|+.+.++..|.+.++..+.+...+....  ...+.+.                   ..-..++..+.+-++|..|
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~--qm~e~~~-------------------~~~~~Lv~ll~ERl~D~~p  360 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDG--QMVEHYK-------------------QKLNDLVGLLVERLSDTYP  360 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhcch--hhHhhHH-------------------HHHHHHHHHHHHHhhccch
Confidence            456678899999999999888876654443211  0101110                   1235678888999999999


Q ss_pred             HHHHHHHHhhHHHHHHhc-hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        212 MVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       212 ~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      -+|.-|.+-+.++...-. -....+++...+.+-++|.+..||+.+..-+..+.
T Consensus       361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL  414 (1128)
T COG5098         361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL  414 (1128)
T ss_pred             HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999998888885311 11124678888889999999999999998888765

>KOG0413|consensus

Probab=95.35  E-value=0.15  Score=52.00  Aligned_cols=169  Identities=17%  Similarity=0.099  Sum_probs=98.2

Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH-HHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK-AELR  169 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~l~  169 (318)
                      ++.++..-+-|.-.-||..|+.++..+.+..+...- ..|+-...+-..|+-+.+|.++.+++.....-.+...+ .+..
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l  551 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL  551 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence            566677778899999999999999999876543221 22333333334455588888776665433222221110 1110


Q ss_pred             HHHHhhccCCCcccccchhhcCc-cchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015        170 SHFRNLCQDDTPMQQGHVWECGS-GVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD  247 (318)
Q Consensus       170 ~~~~~l~~~~~~~vR~~v~~~~~-~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D  247 (318)
                      .--+++..|..-    +...-++ .+.+.++..+..... |+-..||+++...+...-..+......+..+-++..+++|
T Consensus       552 ~~~~~ii~d~~~----~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd  627 (1529)
T KOG0413|consen  552 LDEQQIIQDFKL----KLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRD  627 (1529)
T ss_pred             Ccchhhhhhcch----hhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcC
Confidence            000111111100    1111111 123445555554444 7888888888888877776665554456667788888888


Q ss_pred             CcHHHHHHHHHHHHHHH
Q psy14015        248 EQDSVRLLAVEACVSIA  264 (318)
Q Consensus       248 ~~~~VR~aa~~~l~~l~  264 (318)
                      +...||..++.+++.+.
T Consensus       628 ~~vsvrk~~~~Sltel~  644 (1529)
T KOG0413|consen  628 RMVSVRKTGADSLTELM  644 (1529)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            88888888888777654

>KOG0946|consensus

Probab=95.33  E-value=0.28  Score=49.16  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=127.1

Q ss_pred             hchhhhhhhhcCChH--HHHHHHHHHHcccccCcCcccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015         51 GELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHDLE  127 (318)
Q Consensus        51 ~~llp~l~~l~~D~~--~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~~  127 (318)
                      .+-+|.|..-+....  +=|+.|++.|+.|++...-..-.+.+-|++.-|-.|. ++++-..+++++..+..+-..    
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~----   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS----   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc----
Confidence            344444443333333  2688899999988763221222344667777776665 466667777777776544221    


Q ss_pred             hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                          |.    ..|++.                -++.++.++++.|.                    -.+..+..++.++.
T Consensus        97 ----~~----v~dds~----------------qsdd~g~~iae~fi--------------------k~qd~I~lll~~~e  132 (970)
T KOG0946|consen   97 ----PE----VMDDST----------------QSDDLGLWIAEQFI--------------------KNQDNITLLLQSLE  132 (970)
T ss_pred             ----hh----hcccch----------------hhhHHHHHHHHHHH--------------------cCchhHHHHHHHHH
Confidence                00    111110                12334555655553                    23667899999999


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHH
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPT  279 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~  279 (318)
                      ..+.+||..+++-|..+...-|.+.     +...-+..+..++.|...-+|..++--+..+.+..+.-   ...+.++..
T Consensus       133 ~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer  212 (970)
T KOG0946|consen  133 EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFER  212 (970)
T ss_pred             hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            9999999999999999998877652     12234556778899999999999988888887665543   234556666


Q ss_pred             HHHhccccccccccCCCCCCchhhHHhhhhhhhhh
Q psy14015        280 LRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLM  314 (318)
Q Consensus       280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~  314 (318)
                      |+..+.           +.+.++=.+|-.--|-+|
T Consensus       213 LfsIIe-----------eEGg~dGgIVveDCL~ll  236 (970)
T KOG0946|consen  213 LFSIIE-----------EEGGLDGGIVVEDCLILL  236 (970)
T ss_pred             HHHHHH-----------hcCCCCCcchHHHHHHHH
Confidence            666666           355555544444433333

>KOG0392|consensus

Probab=95.33  E-value=0.69  Score=48.76  Aligned_cols=160  Identities=14%  Similarity=0.110  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccchH
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPP   94 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~   94 (318)
                      .+.+.+.+-+++|..|-.+.-.+.++.+.-|..... ++       ++|. -.|.-..-.|..+.+.+            
T Consensus        79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~-~~-------led~-~~rll~v~~Ldrf~dfi------------  137 (1549)
T KOG0392|consen   79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSY-EL-------LEDL-LIRLLCVLALDRFGDFI------------  137 (1549)
T ss_pred             HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhH-HH-------HHHH-HHHHHHHHHHHHhcccc------------
Confidence            556667777888888888888888877665544211 11       1111 13333333333333222            


Q ss_pred             HhhhccCc-hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         95 LESLATVE-ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        95 l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                           .|+ -.-||++++.+|..+..+.....+.. .+.++.+++..+.|.+|.+....+.....     .+.+...   
T Consensus       138 -----sd~vvapVre~caq~L~~~l~~~~~s~~~~-~~~il~q~~~q~~w~ir~Ggll~iky~~a-----ir~d~l~---  203 (1549)
T KOG0392|consen  138 -----SDNVVAPVREACAQALGAYLKHMDESLIKE-TLDILLQMLRQPNWEIRHGGLLGIKYNVA-----IRQDLLF---  203 (1549)
T ss_pred             -----cccchhhhHHHHHHHHHHHHHhhhhHhhHH-HHHHHHHHHcCcchhheechHHHHHHHHH-----HHHHHHH---
Confidence                 222 25789999999999999887765554 67777888888899999875433221111     1222111   


Q ss_pred             hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015        174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV  228 (318)
Q Consensus       174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~  228 (318)
                                         ......++.+...++|.+..||..+++.+.-++...
T Consensus       204 -------------------~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~  239 (1549)
T KOG0392|consen  204 -------------------QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ  239 (1549)
T ss_pred             -------------------HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence                               123567888899999999999999999988887665

>KOG2933|consensus

Probab=95.26  E-value=0.28  Score=43.99  Aligned_cols=140  Identities=15%  Similarity=0.166  Sum_probs=78.4

Q ss_pred             hccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015         98 LATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL  175 (318)
Q Consensus        98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l  175 (318)
                      .+.++++....-++..+..++.+..+.-  ....++..+.+-++++.-.|=.+||..++.++..+....-.++       
T Consensus        96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l-------  168 (334)
T KOG2933|consen   96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL-------  168 (334)
T ss_pred             HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            3466688888888888888887766421  1112333344444555445555666666655544443322222       


Q ss_pred             ccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHH
Q psy14015        176 CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLL  255 (318)
Q Consensus       176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~a  255 (318)
                                          +.++-.++.-..+.+-=||..+-++|-.+.....+..    +++.+...++..++.+|..
T Consensus       169 --------------------d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~  224 (334)
T KOG2933|consen  169 --------------------DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAK  224 (334)
T ss_pred             --------------------HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhh
Confidence                                2223333333445556677777777777777665533    4444444456666777776


Q ss_pred             HHHHHHHHHhhCC
Q psy14015        256 AVEACVSIASLLS  268 (318)
Q Consensus       256 a~~~l~~l~~~l~  268 (318)
                      ++..+...-.-+|
T Consensus       225 a~~~~~~~v~rl~  237 (334)
T KOG2933|consen  225 AALCFSRCVIRLG  237 (334)
T ss_pred             hhccccccceecc
Confidence            6655554444443

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.22  E-value=2  Score=38.24  Aligned_cols=48  Identities=8%  Similarity=0.090  Sum_probs=36.9

Q ss_pred             hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHH
Q psy14015        233 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL  280 (318)
Q Consensus       233 ~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l  280 (318)
                      +....+|.+..-+..+...++.-+..++...+..+|.+....++.+++
T Consensus       205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw  252 (262)
T PF14500_consen  205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW  252 (262)
T ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            345688877777788888899888899888888888877666655544

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.15  E-value=2.6  Score=41.88  Aligned_cols=133  Identities=16%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             cchHHhhhccCc----hhHHHHHHHHHHHHHHhhCCh------hHHhhhHHHHHHHhhc----CCCchhhhhhhhhhhhh
Q psy14015         91 LLPPLESLATVE----ETVVRDKAVESLRLISAQHSP------HDLEAHFVPLVQRLAS----GDWFTSRTSACGLFSVC  156 (318)
Q Consensus        91 llp~l~~l~~d~----~~~VR~~a~~~l~~l~~~~~~------~~~~~~ilp~~~~l~~----d~~~~vR~~a~~~l~~~  156 (318)
                      ++..+..|+.++    +..+|..|+-++..++...-.      ..+.+.++|.+.+.++    ..+...+..++..||.+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            444455555543    467788888888877763211      1122345555554332    22333344454444432


Q ss_pred             ccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc---CCCHHHHHHHHHhhHHHHHHhchhhh
Q psy14015        157 YPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ---DDTPMVRRAAAGKLGELAKVVEVDYL  233 (318)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~---D~~~~VR~~aa~~L~~l~~~~~~~~~  233 (318)
                      .                                     ....++.+..++.   +....+|.+|+.+|..++... ++.+
T Consensus       474 g-------------------------------------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~-p~~v  515 (574)
T smart00638      474 G-------------------------------------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD-PRKV  515 (574)
T ss_pred             C-------------------------------------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC-chHH
Confidence            1                                     1223344443333   345789999999999887644 3334


Q ss_pred             HhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015        234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l  263 (318)
                      .+.++|+|.+-..  ..+||.+|+..+...
T Consensus       516 ~~~l~~i~~n~~e--~~EvRiaA~~~lm~t  543 (574)
T smart00638      516 QEVLLPIYLNRAE--PPEVRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHcCCCC--ChHHHHHHHHHHHhc
Confidence            5566766654433  446999998776654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.13  E-value=0.95  Score=39.50  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhh
Q psy14015         98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS  154 (318)
Q Consensus        98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~  154 (318)
                      +.+..++......+++|..++.+-.  .....++..+..|.+.+....+..+..++.
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~   63 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLT   63 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            4455556666666666666665432  222334444445555554444444444443

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=95.00  E-value=1  Score=40.96  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHHhhCChhHHhhh---HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015        104 TVVRDKAVESLRLISAQHSPHDLEAH---FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT  180 (318)
Q Consensus       104 ~~VR~~a~~~l~~l~~~~~~~~~~~~---ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~  180 (318)
                      ..|-.+|++....+.+..+++...+.   +.|-+..++.-.+..||-....++.+.+-.++...+..             
T Consensus        69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~-------------  135 (307)
T PF04118_consen   69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPC-------------  135 (307)
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHH-------------
Confidence            68899999999999999988765543   44555555555555666555555544332222211111             


Q ss_pred             cccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q psy14015        181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC  260 (318)
Q Consensus       181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l  260 (318)
                                    .+-++..++.-+.|+..++-..+..-+-.+...+|.+.+++.+.-   .+.  .++.+|..+..-+
T Consensus       136 --------------l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl---~ii--~sp~~Rl~al~~l  196 (307)
T PF04118_consen  136 --------------LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWL---CII--TSPSRRLGALNYL  196 (307)
T ss_pred             --------------HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHH---HHh--cCcchhHHHHHHH
Confidence                          133444455557789999999999999999999998765555443   333  4455888877765


Q ss_pred             HHHHhhCC------h-hh---h----hHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhh
Q psy14015        261 VSIASLLS------Q-SD---V----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMR  315 (318)
Q Consensus       261 ~~l~~~l~------~-~~---~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~  315 (318)
                      ..-...+.      . +.   +    ...++..+..++.|          +     --.++.+.||+|-
T Consensus       197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D----------~-----~iLVqR~~LDlLl  250 (307)
T PF04118_consen  197 LRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLED----------E-----NILVQRGFLDLLL  250 (307)
T ss_pred             HHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCC----------c-----hHHHHHHHHHHHH
Confidence            55443333      0 00   1    13478889999999          5     4567777777764

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.98  E-value=2.2  Score=37.24  Aligned_cols=182  Identities=18%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             hhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHh
Q psy14015         59 ETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRL  137 (318)
Q Consensus        59 ~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l  137 (318)
                      .+.+..++ +...+.+.|+.++..- . .....++..+..+...+....+..+...+..+-..-+.      ..|.+..+
T Consensus         8 ~l~~~~~~~~~~~~L~~L~~l~~~~-~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r------~f~~L~~~   79 (234)
T PF12530_consen    8 KLGKISDPELQLPLLEALPSLACHK-N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR------HFPFLQPL   79 (234)
T ss_pred             HhcCCCChHHHHHHHHHHHHHhccC-c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence            35555555 7778888888876521 1 33444666667776666666655666666666544322      11333322


Q ss_pred             hcC-------------CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015        138 ASG-------------DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN  204 (318)
Q Consensus       138 ~~d-------------~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~  204 (318)
                      +.+             ..|...++.                   +..+.++|...+            ....++++.+..
T Consensus        80 L~~~~~r~~~~~~~~~~~~~~~i~~-------------------a~s~~~ic~~~p------------~~g~~ll~~ls~  128 (234)
T PF12530_consen   80 LLLLILRIPSSFSSKDEFWECLISI-------------------AASIRDICCSRP------------DHGVDLLPLLSG  128 (234)
T ss_pred             HHHHHhhcccccCCCcchHHHHHHH-------------------HHHHHHHHHhCh------------hhHHHHHHHHHH
Confidence            221             223333332                   233444444332            133678888888


Q ss_pred             hh-cCCCHHHHHHHHHhhHHHHHH--hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh--------hhhh
Q psy14015        205 LC-QDDTPMVRRAAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--------SDVE  273 (318)
Q Consensus       205 l~-~D~~~~VR~~aa~~L~~l~~~--~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~--------~~~~  273 (318)
                      .+ ++.++.++..+.+.+..++..  ++--..+..+.|   ++-.|..    -.....+..+...++.        +...
T Consensus       129 ~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~---~l~~~~r----p~v~~~l~~l~~l~~~~~~~~e~~~~~~  201 (234)
T PF12530_consen  129 CLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK---KLSLDYR----PLVLKSLCSLFALVPQGAVDSEEYEELK  201 (234)
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hcCCccc----hHHHHHHHHHHHHhccccCChhhhhHHH
Confidence            88 788899999999999999942  222122222332   2233334    4444444444443322        2244


Q ss_pred             HhhHHHHHHhccc
Q psy14015        274 QLVMPTLRQCSVQ  286 (318)
Q Consensus       274 ~~l~p~l~~ll~D  286 (318)
                      ..++..+......
T Consensus       202 ~~~l~~lW~~~~~  214 (234)
T PF12530_consen  202 RQILQLLWEYTSS  214 (234)
T ss_pred             HHHHHHHHhhccc
Confidence            5688888888877

>KOG1293|consensus

Probab=94.96  E-value=0.55  Score=46.11  Aligned_cols=137  Identities=11%  Similarity=-0.004  Sum_probs=91.1

Q ss_pred             hhHHHHHHHHHHHHHHhhCC---hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCC
Q psy14015        103 ETVVRDKAVESLRLISAQHS---PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD  179 (318)
Q Consensus       103 ~~~VR~~a~~~l~~l~~~~~---~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~  179 (318)
                      +..++.+|..++..+.....   .+.-...+...+.++.+||+.++..++.+.+..++-.++.. +..            
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-ksk------------  456 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-KSK------------  456 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-HHH------------
Confidence            46777888777777665432   11112223333444559999999999888887776655542 222            


Q ss_pred             CcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhh-HHHHHHHhhcCCcHHHHHH
Q psy14015        180 TPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTD-IIPMFVNLAQDEQDSVRLL  255 (318)
Q Consensus       180 ~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~-llp~l~~ll~D~~~~VR~a  255 (318)
                                   +.....+..+.++..|+.+.+|+.+...|-.+.-....+.   ...+ -...+..+.+||+|.|...
T Consensus       457 -------------fl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq  523 (678)
T KOG1293|consen  457 -------------FLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ  523 (678)
T ss_pred             -------------HHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence                         1334567899999999999999999988888775433221   1112 2335567889999999999


Q ss_pred             HHHHHHHHHh
Q psy14015        256 AVEACVSIAS  265 (318)
Q Consensus       256 a~~~l~~l~~  265 (318)
                      +...+.++.-
T Consensus       524 ~fqllRNl~c  533 (678)
T KOG1293|consen  524 CFQLLRNLTC  533 (678)
T ss_pred             HHHHHHHhhc
Confidence            8888777763

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.85  E-value=1.6  Score=40.18  Aligned_cols=86  Identities=15%  Similarity=0.070  Sum_probs=54.4

Q ss_pred             HHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHH
Q psy14015         29 LRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVV  106 (318)
Q Consensus        29 ~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~V  106 (318)
                      .|...++.|..+..    ......+...+..++ ++.+| ....+...|..-...+ +......++..+..-++|....+
T Consensus         3 ~r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~v   77 (339)
T PF12074_consen    3 QRVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPV   77 (339)
T ss_pred             HHHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcH
Confidence            35555565555432    113334455554444 34456 7777777777666555 33445667777877778887779


Q ss_pred             HHHHHHHHHHHHh
Q psy14015        107 RDKAVESLRLISA  119 (318)
Q Consensus       107 R~~a~~~l~~l~~  119 (318)
                      |......++....
T Consensus        78 R~~w~~~~~~~~~   90 (339)
T PF12074_consen   78 RRAWLLCLGEALW   90 (339)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988888875

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1822|consensus

Probab=94.82  E-value=1.5  Score=48.16  Aligned_cols=224  Identities=15%  Similarity=0.163  Sum_probs=122.8

Q ss_pred             hhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchH-HhhhccCchhHHHHHHHHHHHHHHhh
Q psy14015         43 ALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPP-LESLATVEETVVRDKAVESLRLISAQ  120 (318)
Q Consensus        43 ~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~  120 (318)
                      .+|++..+.--+.++...+....+ .|..+++.+..++..+|...+...+... ++.+.+-.+..-|..-.-+++-+-.+
T Consensus       867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky  946 (2067)
T KOG1822|consen  867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY  946 (2067)
T ss_pred             ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence            367776555555555566666667 8999999999999888876655555544 45554433444454433334434333


Q ss_pred             ---CChhHHhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhccccCcchHH----HHHHHHHhhccCCCc--ccccc---h
Q psy14015        121 ---HSPHDLEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPRVTAGVKA----ELRSHFRNLCQDDTP--MQQGH---V  187 (318)
Q Consensus       121 ---~~~~~~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~~~~~~~~----~l~~~~~~l~~~~~~--~vR~~---v  187 (318)
                         ...++....-+.++..+..|+. +.|+..+...+..+...-....+.    .+.....-+.+..+-  +|++.   +
T Consensus       947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen  947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred             ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence               3444444445567788888864 477777666665544433332222    121112222222221  12221   1


Q ss_pred             h-----------hcCcc--------chHHHHHHH---HHhhcC-CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh
Q psy14015        188 W-----------ECGSG--------VKAELRSHF---RNLCQD-DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL  244 (318)
Q Consensus       188 ~-----------~~~~~--------~~~~ll~~l---~~l~~D-~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l  244 (318)
                      .           .+|+.        ....+....   -.++.+ +++.+--.++++|-.+.-+-....-.+.+++.+..+
T Consensus      1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSL 1106 (2067)
T ss_pred             cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHH
Confidence            1           12221        111111111   122233 467777777777777766655544456688888888


Q ss_pred             hcCCcHHHHHHHHHHHHHHHhh
Q psy14015        245 AQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       245 l~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      +..+.-..|.+.+.++.++..-
T Consensus      1107 l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             hcchhhhhhhhHHhhhhHHhHH
Confidence            8888888888777777777653

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.80  E-value=0.15  Score=42.60  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHhhCChhHHhh---hHHH------------HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015        106 VRDKAVESLRLISAQHSPHDLEA---HFVP------------LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS  170 (318)
Q Consensus       106 VR~~a~~~l~~l~~~~~~~~~~~---~ilp------------~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~  170 (318)
                      ||..|+.++..+++..++.....   .++|            ++.-+..|++..+|..|+..+..+..+...-    +  
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~----L--   75 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF----L--   75 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH----H--
Confidence            67777777777776644322111   1222            2223567888888888888887776553211    1  


Q ss_pred             HHHhhccCCCcccccchh----hcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhc----hhhhHhhHHHHH
Q psy14015        171 HFRNLCQDDTPMQQGHVW----ECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVE----VDYLKTDIIPMF  241 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~v~----~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~----~~~~~~~llp~l  241 (318)
                         ..+.+.... +....    .++ ..-.++...+...++.+ +..+=-.+.+++..+.....    +......++..+
T Consensus        76 ---~~Ae~~~~~-~~sFtslS~tLa-~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v  150 (182)
T PF13251_consen   76 ---AQAEESKGP-SGSFTSLSSTLA-SMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQV  150 (182)
T ss_pred             ---HHHHhcCCC-CCCcccHHHHHH-HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHH
Confidence               111111000 00000    000 11234556666666655 56777788899988887543    223456677777


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        242 VNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       242 ~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      ..++.+.+..||.++..+++.+....
T Consensus       151 ~~~l~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  151 RPLLRHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            78888888889999998888887543

>KOG1525|consensus

Probab=94.75  E-value=0.2  Score=53.47  Aligned_cols=137  Identities=17%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK  165 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~  165 (318)
                      ...++|.|..-+..++..+|..|+..++.+.......  .....+...+..-++|.+..||..+++....++..-+... 
T Consensus       257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~-  335 (1266)
T KOG1525|consen  257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA-  335 (1266)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh-
Confidence            3445666655555556666666666666655443221  1122244444555566666666666666555443322211 


Q ss_pred             HHHHHHHHhhc-cCCCccccc--chhh--c--Cc----cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015        166 AELRSHFRNLC-QDDTPMQQG--HVWE--C--GS----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV  227 (318)
Q Consensus       166 ~~l~~~~~~l~-~~~~~~vR~--~v~~--~--~~----~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~  227 (318)
                      ... ...-.++ .+.++.+|.  .|..  .  .+    .... ++..+...+.|..|.||+.|...|.++-+.
T Consensus       336 ~~~-~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  336 KAS-TILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hHH-HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            110 1111222 233333332  1110  0  00    1223 667777888999999999999999999874

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.74  E-value=0.44  Score=44.56  Aligned_cols=136  Identities=14%  Similarity=0.194  Sum_probs=84.7

Q ss_pred             chHHHHHHHhcCccHH-HHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC----C--hHH-HHHHHHHHHcccccCc--
Q psy14015         13 YPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGQERTRGELIPFLTETIY----D--EDE-VLLALAEQLGTFTPNV--   82 (318)
Q Consensus        13 ~~i~~l~~~l~~~~~~-~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~----D--~~~-VR~~aa~~L~~l~~~~--   82 (318)
                      +|.+-+-..+..++.. -|.+|+.-|..+++..+.. ..+-+..++..+++    +  .+| -+.+|...++.++...  
T Consensus       210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t  288 (370)
T PF08506_consen  210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST  288 (370)
T ss_dssp             SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred             CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence            3555555666655655 4667777777777665543 33344445555443    3  445 6677777766665432  


Q ss_pred             ---Cc----------ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhh
Q psy14015         83 ---GG----------PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSA  149 (318)
Q Consensus        83 ---~~----------~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a  149 (318)
                         |.          +.+.+.++|.|. -..+..+.+|..|++-+..+-+.++++...+ ++|.+.+.+++++.-|+..|
T Consensus       289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-~~~~l~~~L~~~~~vv~tyA  366 (370)
T PF08506_consen  289 TKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-IFPLLVNHLQSSSYVVHTYA  366 (370)
T ss_dssp             BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-HHHHHHHHTTSS-HHHHHHH
T ss_pred             ccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHhCCCCcchhhhh
Confidence               11          223566778777 2334568899999999999999999877666 89999999999888888777


Q ss_pred             hh
Q psy14015        150 CG  151 (318)
Q Consensus       150 ~~  151 (318)
                      |.
T Consensus       367 A~  368 (370)
T PF08506_consen  367 AI  368 (370)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.71  E-value=0.49  Score=34.86  Aligned_cols=83  Identities=20%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhH
Q psy14015        199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM  277 (318)
Q Consensus       199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~  277 (318)
                      +....+.++|+.+-||-.+...|.++...-. .......++..+...++|++..|=-+|+.++..++...+.     .++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl   79 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVL   79 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHH
Confidence            4455666789999999999999999987654 3333567999999999999999999999999999987644     356


Q ss_pred             HHHHHhccc
Q psy14015        278 PTLRQCSVQ  286 (318)
Q Consensus       278 p~l~~ll~D  286 (318)
                      |.++..-.|
T Consensus        80 ~~L~~~y~~   88 (92)
T PF10363_consen   80 PILLDEYAD   88 (92)
T ss_pred             HHHHHHHhC
Confidence            667666555

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.65  E-value=1.6  Score=43.56  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--------hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--------YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--------~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      +..|.++++.++.-.|.+.....+.+...+..+        ...+.++..+..-+.|.++.+|-.+...+..+++.-.+.
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            467789999999999999999999998765332        134678888888899999999999999988888654443


Q ss_pred             h-hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhhc
Q psy14015        271 D-VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRH  316 (318)
Q Consensus       271 ~-~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~~  316 (318)
                      . ..+.+.......+.|          ...-||-+.||--+==+|+|
T Consensus       381 ~~~r~ev~~lv~r~lqD----------rss~VRrnaikl~SkLL~~H  417 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQD----------RSSVVRRNAIKLCSKLLMRH  417 (1128)
T ss_pred             cchHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHhcC
Confidence            2 235688889999999          88999999998887778888

>KOG1020|consensus

Probab=94.57  E-value=0.88  Score=48.83  Aligned_cols=128  Identities=13%  Similarity=0.077  Sum_probs=89.8

Q ss_pred             hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      ..++..+...+..+...+|.-|...+..+...-+                    .|         -..+.+...+..-+.
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--------------------~v---------L~~~dvq~~Vh~R~~  865 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADP--------------------SV---------LSRPDVQEAVHGRLN  865 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--------------------Hh---------hcCHHHHHHHHHhhc
Confidence            3455556666666777888888777765533211                    10         123667778888899


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      |....||.+|..-+|.+.-..  +.........+..-..|+.-.||+.+.+.+-.++.-.+.-.....++--++.-.+|
T Consensus       866 DssasVREAaldLvGrfvl~~--~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~D  942 (1692)
T KOG1020|consen  866 DSSASVREAALDLVGRFVLSI--PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVND  942 (1692)
T ss_pred             cchhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcc
Confidence            999999999999999887643  22344555666677799999999999999999987665544445566666777777

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.54  E-value=0.19  Score=37.07  Aligned_cols=60  Identities=12%  Similarity=-0.058  Sum_probs=48.9

Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhCC-hhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015        241 FVNLAQDEQDSVRLLAVEACVSIASLLS-QSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATT  310 (318)
Q Consensus       241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~-~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~  310 (318)
                      ....++||..-||......+..+...-. .....+.++..+...++|          +++.|.+++|+...
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d----------~DsyVYL~aI~~L~   68 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKD----------EDSYVYLNAIKGLA   68 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCC----------CCchHHHHHHHHHH
Confidence            3456699999999988888888776655 444556799999999999          99999999998753

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.51  E-value=2.1  Score=47.82  Aligned_cols=257  Identities=12%  Similarity=0.112  Sum_probs=141.7

Q ss_pred             cCccHHHHHHHHHhHHHHHHh-hChH-----hHhhc-hhhhhhhhcCChH-HHHHHHHHHHcccccCcCc--ccchhccc
Q psy14015         23 KNEDVQLRLNSIKKLSTIALA-LGQE-----RTRGE-LIPFLTETIYDED-EVLLALAEQLGTFTPNVGG--PEYVHCLL   92 (318)
Q Consensus        23 ~~~~~~~R~~~~~~L~~ia~~-lg~~-----~~~~~-llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~--~~~~~~ll   92 (318)
                      -+.+..++.-++..|..++.. +..+     .++++ |.||..-+..... +||.-+.+-+.++...-+.  ..=|..++
T Consensus      1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076       1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence            355677888999998888765 2222     23444 4555543433333 4888888888877543222  11367788


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhh-CC---h--hHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQ-HS---P--HDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVK  165 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~-~~---~--~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~  165 (318)
                      .++..-..++++.+-..|.+++..+... ++   .  ......++.-+.++++.. ...+=..|+..|..+...+.+.. 
T Consensus      1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~- 1305 (1780)
T PLN03076       1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD- 1305 (1780)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc-
Confidence            8888877888887778888888776543 21   1  122233444444555433 23333455555544332221100 


Q ss_pred             HHHHHHHHhhccCCC-------cccc----cchhhc--Cc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015        166 AELRSHFRNLCQDDT-------PMQQ----GHVWEC--GS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE  229 (318)
Q Consensus       166 ~~l~~~~~~l~~~~~-------~~vR----~~v~~~--~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~  229 (318)
                            +........       +...    .....+  .+   ..+-.++..|.+++.|+..+||..|...|-.+....|
T Consensus      1306 ------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1306 ------LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             ------ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence                  000000000       0000    000000  00   1223344555666889999999999999988887776


Q ss_pred             hh--------hhHhhHHHHHHHhhc----------------------CCcHHHHHHHHHHHHHHHhhCChhh-hhHhhHH
Q psy14015        230 VD--------YLKTDIIPMFVNLAQ----------------------DEQDSVRLLAVEACVSIASLLSQSD-VEQLVMP  278 (318)
Q Consensus       230 ~~--------~~~~~llp~l~~ll~----------------------D~~~~VR~aa~~~l~~l~~~l~~~~-~~~~l~p  278 (318)
                      ..        .+...+.|+|..+-.                      |-..|...++..++..+...|.+-. ....++|
T Consensus      1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43        133468888876531                      1123567888888888887776532 2334666


Q ss_pred             HHHHhccc
Q psy14015        279 TLRQCSVQ  286 (318)
Q Consensus       279 ~l~~ll~D  286 (318)
                      -++.+|..
T Consensus      1460 ~~l~ll~~ 1467 (1780)
T PLN03076       1460 KVLMLLVS 1467 (1780)
T ss_pred             HHHHHHHH
Confidence            66666654

>KOG1822|consensus

Probab=94.45  E-value=0.96  Score=49.58  Aligned_cols=108  Identities=22%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhh-hhcCChHH-HHHHHHHHHcccccCcCcccchhccc-
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLT-ETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL-   92 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~-~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll-   92 (318)
                      .-....+-..++..|..+...++.++...|+..+...+..+.. ++.+-.++ -|....-.++.+-+.+|+-...+.+. 
T Consensus       879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t  958 (2067)
T KOG1822|consen  879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT  958 (2067)
T ss_pred             HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence            3445677889999999999999999988887765555555544 44444556 77777788887777666543344444 


Q ss_pred             --hHHhhhccCchh-HHHHHHHHHHHHHHhhCCh
Q psy14015         93 --PPLESLATVEET-VVRDKAVESLRLISAQHSP  123 (318)
Q Consensus        93 --p~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~  123 (318)
                        .++..+..|..+ .|+..++.++..+....++
T Consensus       959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p  992 (2067)
T KOG1822|consen  959 SVSILLALATDSTSPVVQTWSLHALALILDSSGP  992 (2067)
T ss_pred             HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence              478888888865 9999999999999988766

>KOG1525|consensus

Probab=94.35  E-value=0.68  Score=49.59  Aligned_cols=157  Identities=13%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc----chHHHHHHHHHhhccCC
Q psy14015        104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKAELRSHFRNLCQDD  179 (318)
Q Consensus       104 ~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~----~~~~~l~~~~~~l~~~~  179 (318)
                      ..++...-+.+.++-...+.  ....++|.+..=+..++..+|..|..++|.++.....    ...... ..|-.=+.|.
T Consensus       236 ~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~-~~fl~r~~D~  312 (1266)
T KOG1525|consen  236 SSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLW-SAFLGRFNDI  312 (1266)
T ss_pred             cchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHH-HHHHHHhccC
Confidence            33444444555555443322  2334888887666666788999999999998766432    222232 3343445566


Q ss_pred             CcccccchhhcCc-------cchH--HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015        180 TPMQQGHVWECGS-------GVKA--ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       180 ~~~vR~~v~~~~~-------~~~~--~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~  250 (318)
                      .+.||.+++..++       ...+  ...-.+.....|++.++|..++.....+..+. -..+.. ++..+...+.|-.|
T Consensus       313 ~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~-l~~~~~-ll~~~~eR~rDKk~  390 (1266)
T KOG1525|consen  313 SVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFK-LVYIPL-LLKLVAERLRDKKI  390 (1266)
T ss_pred             ChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh-hhhhHH-HHHHHHHHHhhhhH
Confidence            7788886554332       1111  12222333445666667665444443333321 111223 78888899999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy14015        251 SVRLLAVEACVSIAS  265 (318)
Q Consensus       251 ~VR~aa~~~l~~l~~  265 (318)
                      .||.-|+..+.++.+
T Consensus       391 ~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  391 KVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999887

>KOG2213|consensus

Probab=94.31  E-value=3.3  Score=38.52  Aligned_cols=87  Identities=16%  Similarity=0.163  Sum_probs=56.0

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccC------------chhHHHHHHHHHHHHH
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATV------------EETVVRDKAVESLRLI  117 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d------------~~~~VR~~a~~~l~~l  117 (318)
                      .+-+..-..+++|++- ||+.|.+.|+.||+-    +....+.|.+.+|++.            -++.+|++++.-+..=
T Consensus        60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tK  135 (460)
T KOG2213|consen   60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTK  135 (460)
T ss_pred             hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            3445666678888877 999999999999872    4556666666665531            2567777766555442


Q ss_pred             HhhCCh----hHHhhhHHHHHHHhhcCC
Q psy14015        118 SAQHSP----HDLEAHFVPLVQRLASGD  141 (318)
Q Consensus       118 ~~~~~~----~~~~~~ilp~~~~l~~d~  141 (318)
                      .-.+..    +.+..+++..+++.+.|.
T Consensus       136 l~~l~~e~L~kevE~~iv~eikkal~dV  163 (460)
T KOG2213|consen  136 LITLKGEVLTKEVERHIVDEIKKALEDV  163 (460)
T ss_pred             hhcccHHHhhhHHHHHHHHHHHHHHHhc
Confidence            222222    345666777777666653

>KOG0392|consensus

Probab=94.30  E-value=0.29  Score=51.42  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=87.3

Q ss_pred             HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH--HhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF--RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~--~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      ++..+....-++.|.+|..++-.+..+...-........++.+  +.+|                   -..+..|-++..
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~-------------------v~~Ldrf~dfis  138 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLC-------------------VLALDRFGDFIS  138 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHH-------------------HHHHHHhccccc
Confidence            4444555556688999988877666554433333222222111  1111                   122444555555


Q ss_pred             CCC-HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhc
Q psy14015        208 DDT-PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCS  284 (318)
Q Consensus       208 D~~-~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll  284 (318)
                      |.. ..||.++++.|+.+...+.... ..+.+.++.+++.-|.|.+|..=+.++.........  ......+++.+..-|
T Consensus       139 d~vvapVre~caq~L~~~l~~~~~s~-~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L  217 (1549)
T KOG0392|consen  139 DNVVAPVREACAQALGAYLKHMDESL-IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGL  217 (1549)
T ss_pred             ccchhhhHHHHHHHHHHHHHhhhhHh-hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            554 6899999999999998776543 366778888999999999998766665554432111  133456788889999


Q ss_pred             cccc
Q psy14015        285 VQIV  288 (318)
Q Consensus       285 ~D~~  288 (318)
                      .|++
T Consensus       218 ~ds~  221 (1549)
T KOG0392|consen  218 EDSD  221 (1549)
T ss_pred             hhcc
Confidence            9944

>KOG1020|consensus

Probab=94.30  E-value=0.49  Score=50.64  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             CCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015         11 SLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV   88 (318)
Q Consensus        11 ~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~   88 (318)
                      ++++ +..++..+..+.+.+|-.|++-|+.|..+=..--+.+.+.-.+..-+.|+.. ||.+|.+-+|.+.-  ..++..
T Consensus       813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl--~~~e~~  890 (1692)
T KOG1020|consen  813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL--SIPELI  890 (1692)
T ss_pred             hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--ccHHHH
Confidence            4455 3445567777778899999999999975522222345566677777777776 99999999998853  345555


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhh
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC  156 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~  156 (318)
                      ...+..+.+-..|+.-.||..++..+..++...+.=.....+..-+..-.+|+.-.+..-+.+.|-++
T Consensus       891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            55667777778899999999999999999987665221112333333345666555666666655543

>KOG1991|consensus

Probab=94.22  E-value=1.4  Score=45.31  Aligned_cols=173  Identities=16%  Similarity=0.093  Sum_probs=100.5

Q ss_pred             ccchhccchHHhhhcc------CchhHHHH--HHHHHHHHHHhhCCh-----hHHhhhHHHHHHHhhcCCCchhhhhhhh
Q psy14015         85 PEYVHCLLPPLESLAT------VEETVVRD--KAVESLRLISAQHSP-----HDLEAHFVPLVQRLASGDWFTSRTSACG  151 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~------d~~~~VR~--~a~~~l~~l~~~~~~-----~~~~~~ilp~~~~l~~d~~~~vR~~a~~  151 (318)
                      ++..+.+++.+.+.+.      .+++..|.  .|+..++.++..+.+     ......+++++.-.++++.=..|.-||+
T Consensus       405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~  484 (1010)
T KOG1991|consen  405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW  484 (1010)
T ss_pred             hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence            3445556666655554      55555554  588888888877654     3344457777777778888788888988


Q ss_pred             hhhhhc-cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhc
Q psy14015        152 LFSVCY-PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVE  229 (318)
Q Consensus       152 ~l~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~  229 (318)
                      .++.+. -.++..                             ....+.+....+.+. |.+--||-.||-+|-.+.....
T Consensus       485 vl~~~~~~df~d~-----------------------------~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~  535 (1010)
T KOG1991|consen  485 VLSQFSSIDFKDP-----------------------------NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE  535 (1010)
T ss_pred             HHHHHHhccCCCh-----------------------------HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence            887654 222211                             112344555555554 8888999999999998886543


Q ss_pred             h--hhhHhhHHHHHH---HhhcCCcHHHHHHHHH-HHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015        230 V--DYLKTDIIPMFV---NLAQDEQDSVRLLAVE-ACVSIASLLSQS--DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       230 ~--~~~~~~llp~l~---~ll~D~~~~VR~aa~~-~l~~l~~~l~~~--~~~~~l~p~l~~ll~D  286 (318)
                      .  +.+...+-|.+.   ++.++.+-..=..+++ -+..+++-+.+-  .-.++|...+.+++.+
T Consensus       536 ~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~  600 (1010)
T KOG1991|consen  536 QADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT  600 (1010)
T ss_pred             hhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence            2  223344444444   4445444333222222 222333333332  2346677778888874

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=94.06  E-value=5.5  Score=40.47  Aligned_cols=135  Identities=15%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             HHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhccc
Q psy14015         18 LIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLL   92 (318)
Q Consensus        18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~ll   92 (318)
                      +...++.++...|. +..-|..++....-  .-....+++.|.++++.++. +...+..-|.++.-.-..  .-....++
T Consensus       255 ~~~l~~kQeqLlrv-~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV  333 (708)
T PF05804_consen  255 LQTLIRKQEQLLRV-AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV  333 (708)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence            33444555555553 33445555533221  22355788888888876554 878788888877532111  12234578


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhh
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSV  155 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~  155 (318)
                      |-+..++..++...+..++..|..++-.-.-  .-+..-++|.+..+++++.  .|..+..+|..
T Consensus       334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~  396 (708)
T PF05804_consen  334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYN  396 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHH
Confidence            8888888888888899999988888743221  2233347888889998874  34455555443

>KOG1293|consensus

Probab=93.96  E-value=4.3  Score=40.13  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             HHHHHHHHHcccccCcC----cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhc
Q psy14015         67 VLLALAEQLGTFTPNVG----GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLAS  139 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~----~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~  139 (318)
                      ++.+++.-+..+...+.    +... ..+..-+.+++.|++..|...++.++..++=.++.   ..+..-.+..+.++..
T Consensus       393 ~~aaa~l~~~s~srsV~aL~tg~~~-~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~  471 (678)
T KOG1293|consen  393 FVAAALLCLKSFSRSVSALRTGLKR-NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLT  471 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcc-chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhc
Confidence            66777776666654321    1111 22333344555999999999999999998866544   3344558889999999


Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG  219 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~  219 (318)
                      ++.+.+|..+.+.|.-..-...+..+..+                         .++--...+..+++|++|.|...|.+
T Consensus       472 ~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-------------------------~~ki~a~~i~~l~nd~d~~Vqeq~fq  526 (678)
T KOG1293|consen  472 DPDFNSRANSLWVLRHLMFNCDEEEKFQL-------------------------LAKIPANLILDLINDPDWAVQEQCFQ  526 (678)
T ss_pred             CCCchHHHHHHHHHHHHHhcchHHHHHHH-------------------------HHHhhHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999888877644333222222221                         11112344567778888888877776


Q ss_pred             hhHHHH
Q psy14015        220 KLGELA  225 (318)
Q Consensus       220 ~L~~l~  225 (318)
                      -|-.+.
T Consensus       527 llRNl~  532 (678)
T KOG1293|consen  527 LLRNLT  532 (678)
T ss_pred             HHHHhh
Confidence            666554

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.78  E-value=0.33  Score=38.55  Aligned_cols=123  Identities=12%  Similarity=0.066  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCc------------------ccch
Q psy14015         27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG------------------PEYV   88 (318)
Q Consensus        27 ~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~------------------~~~~   88 (318)
                      +.+|...+..+..++...-|+ .++++++.+.++++.+..-.....+.|..+.+.+..                  ....
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~   80 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence            467888888899988776555 467788888777766433333333333333221110                  1123


Q ss_pred             hccchHHhhhccCch----hHHHHHHHHHHHHHHhhCChhHHhh-hHHHHHHHhhcCCCchhhhhhhhh
Q psy14015         89 HCLLPPLESLATVEE----TVVRDKAVESLRLISAQHSPHDLEA-HFVPLVQRLASGDWFTSRTSACGL  152 (318)
Q Consensus        89 ~~llp~l~~l~~d~~----~~VR~~a~~~l~~l~~~~~~~~~~~-~ilp~~~~l~~d~~~~vR~~a~~~  152 (318)
                      +.++.++.+.+....    ..+...+++++.....-.+.+.+.+ .+++.+.++++++..  |..|++.
T Consensus        81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c  147 (148)
T PF08389_consen   81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC  147 (148)
T ss_dssp             HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence            446666666554433    7888899999999998888777665 488999888877654  5566543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG1993|consensus

Probab=93.77  E-value=1.2  Score=44.87  Aligned_cols=209  Identities=19%  Similarity=0.197  Sum_probs=121.0

Q ss_pred             HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhC--Chh
Q psy14015         49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQH--SPH  124 (318)
Q Consensus        49 ~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~--~~~  124 (318)
                      ..+.++|-+. .-.+..- .|+-++--+++....--..+....++-.+-+++.|. |..||-+++.++..+..-.  +++
T Consensus       485 l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d  563 (978)
T KOG1993|consen  485 LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED  563 (978)
T ss_pred             HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence            4566777665 2222333 999999999988763333455566777788999998 6788999999998887653  232


Q ss_pred             HHhh---hHHHHHHHhhcC-CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHH
Q psy14015        125 DLEA---HFVPLVQRLASG-DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRS  200 (318)
Q Consensus       125 ~~~~---~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~  200 (318)
                      ....   .+.-.+.++++. .....|.....+++.++.+.++.+....                           ..++.
T Consensus       564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~---------------------------~~ivq  616 (978)
T KOG1993|consen  564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA---------------------------STIVQ  616 (978)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH---------------------------HHHHH
Confidence            2111   122222333433 2355677777777776666554332111                           23334


Q ss_pred             HHHHhhc--CCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhCChhh----
Q psy14015        201 HFRNLCQ--DDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSD----  271 (318)
Q Consensus       201 ~l~~l~~--D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~-~~~VR~aa~~~l~~l~~~l~~~~----  271 (318)
                      .+-.+..  .+.+..|.+....|..+...+|.+  .....++|++. +..|| ++..-.-...++.-....++-..    
T Consensus       617 ~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe-l~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p  695 (978)
T KOG1993|consen  617 YLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE-LSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTP  695 (978)
T ss_pred             HHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH-HhcCCCCCceeehhhhHHHHHHHHHhcccccCH
Confidence            4433432  267889999999999999999965  34455666654 55555 33333333333333332222111    


Q ss_pred             hhHhhHHHHHHhccc
Q psy14015        272 VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       272 ~~~~l~p~l~~ll~D  286 (318)
                      ..-.++|.+...+.-
T Consensus       696 ~ll~L~p~l~~~iE~  710 (978)
T KOG1993|consen  696 ELLLLFPHLLYIIEQ  710 (978)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            112366666666554

>KOG1991|consensus

Probab=93.75  E-value=2  Score=44.34  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=101.7

Q ss_pred             cCchhHHHH-------------HHHHHHHHHHhhCChhHHhhhHHHHHHHhhc----C----CCchhhhhhhhhhhhhcc
Q psy14015        100 TVEETVVRD-------------KAVESLRLISAQHSPHDLEAHFVPLVQRLAS----G----DWFTSRTSACGLFSVCYP  158 (318)
Q Consensus       100 ~d~~~~VR~-------------~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~----d----~~~~vR~~a~~~l~~~~~  158 (318)
                      .|+.+-+|.             +|...+..++.+-+++.... +++.+.+.++    +    ++++-..+|..++|.++.
T Consensus       369 ~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k-~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~  447 (1010)
T KOG1991|consen  369 EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPK-ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLAS  447 (1010)
T ss_pred             cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHH
Confidence            456666665             57777777777766654333 4444433333    2    234555677777776554


Q ss_pred             ccCcc--hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHH-HHhchhhhHh
Q psy14015        159 RVTAG--VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA-KVVEVDYLKT  235 (318)
Q Consensus       159 ~~~~~--~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~-~~~~~~~~~~  235 (318)
                      .+...  .+..                          ....+.+.+.-.++++.-..|.-|+.-++.++ ..+..+....
T Consensus       448 ~L~K~s~~~~~--------------------------mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~  501 (1010)
T KOG1991|consen  448 ILLKKSPYKSQ--------------------------MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS  501 (1010)
T ss_pred             HHccCCchHHH--------------------------HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH
Confidence            33321  1111                          12345667777888999999999999999999 4455555566


Q ss_pred             hHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhcc
Q psy14015        236 DIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSV  285 (318)
Q Consensus       236 ~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll~  285 (318)
                      .++....+.+. |.+--||--++-|+..+......  +....++-|.+..+|+
T Consensus       502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~  554 (1010)
T KOG1991|consen  502 EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK  554 (1010)
T ss_pred             HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH
Confidence            67776666555 99999999999999998866543  3345555555555543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.45  E-value=0.76  Score=37.60  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=77.9

Q ss_pred             ChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCcccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhh-
Q psy14015         45 GQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQ-  120 (318)
Q Consensus        45 g~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~-  120 (318)
                      .|.....+|++.+.+++..+ ++ +|+++.+.||.++-.  ++..-+.+..-...-. .+.++.....   .+...... 
T Consensus         3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~   77 (160)
T PF11865_consen    3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSNDESTDI---SLPMMGISP   77 (160)
T ss_pred             chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccccchhh---HHhhccCCC
Confidence            34445678889988888654 35 999999999977421  1111010111010000 1111111111   11111111 


Q ss_pred             CChhHHhhhHHHHHHHhhcCCCch-hhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015        121 HSPHDLEAHFVPLVQRLASGDWFT-SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR  199 (318)
Q Consensus       121 ~~~~~~~~~ilp~~~~l~~d~~~~-vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll  199 (318)
                      ..++.+....+..+.+.++|++.. ....++..+-.++..++..               .-            ..-..++
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~---------------cv------------~~L~~vi  130 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK---------------CV------------PYLPQVI  130 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC---------------ch------------hHHHHHh
Confidence            233444455666677777887532 2334444433333222211               10            1336788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKV  227 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~  227 (318)
                      |.++..+.......|+...+.|+.+...
T Consensus       131 P~~l~~i~~~~~~~~e~~~~qL~~lv~i  158 (160)
T PF11865_consen  131 PIFLRVIRTCPDSLREFYFQQLADLVSI  158 (160)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            8888888877778888888888877654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=93.44  E-value=0.8  Score=41.16  Aligned_cols=40  Identities=10%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD  125 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~  125 (318)
                      ..+..++|.+..++.|.+..+|..++..+..+.+..+...
T Consensus       115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~  154 (282)
T PF10521_consen  115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE  154 (282)
T ss_pred             HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence            3456689999999999999999999999999999887655

>KOG0413|consensus

Probab=93.43  E-value=5.3  Score=41.44  Aligned_cols=182  Identities=18%  Similarity=0.133  Sum_probs=99.8

Q ss_pred             hhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--------
Q psy14015         53 LIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--------  123 (318)
Q Consensus        53 llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--------  123 (318)
                      +..++..-|-|..+ ||..++..+.++.+..++.. ...|+-.+.+-..|+--.+++++...+..-...++.        
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l  551 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL  551 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence            34444444555555 77777777776666554432 233444444445555555555554444432222211        


Q ss_pred             -------------------hHHhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCccc
Q psy14015        124 -------------------HDLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQ  183 (318)
Q Consensus       124 -------------------~~~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~v  183 (318)
                                         ..+...++..+.+-.+ |+-..+|..|+.++.....+...                .    
T Consensus       552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~----------------~----  611 (1529)
T KOG0413|consen  552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE----------------A----  611 (1529)
T ss_pred             CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch----------------h----
Confidence                               1122233444433333 55455666666655432221111                0    


Q ss_pred             ccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14015        184 QGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVS  262 (318)
Q Consensus       184 R~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~  262 (318)
                               ...+..+-++-.+|.|+...||+.++.+|+++...-..= .+...-+-.+...++|.+..|...+..-|++
T Consensus       612 ---------~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k  682 (1529)
T KOG0413|consen  612 ---------SKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMK  682 (1529)
T ss_pred             ---------hcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence                     122445788889999999999999999999987521100 1112233456667788888888888886766


Q ss_pred             HH
Q psy14015        263 IA  264 (318)
Q Consensus       263 l~  264 (318)
                      +.
T Consensus       683 ~l  684 (1529)
T KOG0413|consen  683 VL  684 (1529)
T ss_pred             HH
Confidence            55

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.30  E-value=1.1  Score=42.03  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh----cCC--CchhhhhhhhhhhhhccccCcc-hHHHHHHHHHhhc
Q psy14015        104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA----SGD--WFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLC  176 (318)
Q Consensus       104 ~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~----~d~--~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~l~  176 (318)
                      +..|.+|.+-+..++++.++ .+...+..++.+++    +++  +|+.+-+|+.+++.+..+.... .+-.         
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~-~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt---------  294 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEK-QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVT---------  294 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S---------
T ss_pred             CCcHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcc---------
Confidence            46677899999999887543 33333334444433    343  5888888888888765443211 0000         


Q ss_pred             cCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHH
Q psy14015        177 QDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA  256 (318)
Q Consensus       177 ~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa  256 (318)
                       +..+     .....+....+++|-+. --.+..+-+|..|++.+..+-..+.++. ...++|.+.+.+++++..|+.=|
T Consensus       295 -~~~~-----~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyA  366 (370)
T PF08506_consen  295 -QTNE-----LVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYA  366 (370)
T ss_dssp             --B-T-----TS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHH
T ss_pred             -cccc-----cccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhh
Confidence             0000     00001123455556555 2335668899999999999988887654 46799999999999999999888


Q ss_pred             HHHH
Q psy14015        257 VEAC  260 (318)
Q Consensus       257 ~~~l  260 (318)
                      +.++
T Consensus       367 A~~i  370 (370)
T PF08506_consen  367 AIAI  370 (370)
T ss_dssp             HHHH
T ss_pred             hhhC
Confidence            7664

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.05  E-value=0.48  Score=38.63  Aligned_cols=141  Identities=18%  Similarity=0.207  Sum_probs=85.5

Q ss_pred             HHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         94 PLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        94 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                      ++..+.. ...+++|..+.-++..+.+ ..++...+.+..++..+..+........+...+..+++...+ +...+    
T Consensus         8 lL~~L~~~~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d-v~~~l----   81 (157)
T PF11701_consen    8 LLTSLDMLRQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPD-VGSEL----   81 (157)
T ss_dssp             HHHHHHCTTTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH-HHHHH----
T ss_pred             HHHHhcccCCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH-HHHHH----
Confidence            3444443 5568899998888888852 233445566777777777665455556666666666554432 22222    


Q ss_pred             HhhccCCCcccccchhhcCccchHHHHHHHHHhhc--CCCHHHHHHHHHhhHHHHHHh-chhhhHhhHHHHHHHhhc-CC
Q psy14015        173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ--DDTPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMFVNLAQ-DE  248 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~--D~~~~VR~~aa~~L~~l~~~~-~~~~~~~~llp~l~~ll~-D~  248 (318)
                                          ...+.+++.+..++.  .++..+-.++++.|..=+..- ..+.+....++.++.+.+ ++
T Consensus        82 --------------------~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~  141 (157)
T PF11701_consen   82 --------------------FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK  141 (157)
T ss_dssp             --------------------CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred             --------------------HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Confidence                                234566777777777  667778888887776554211 123455678899999995 55


Q ss_pred             cHH-HHHHHHHHH
Q psy14015        249 QDS-VRLLAVEAC  260 (318)
Q Consensus       249 ~~~-VR~aa~~~l  260 (318)
                      +.. +|..++-++
T Consensus       142 ~~~~ir~~A~v~L  154 (157)
T PF11701_consen  142 DDSEIRVLAAVGL  154 (157)
T ss_dssp             -HH-CHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            455 666665444

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4413|consensus

Probab=92.93  E-value=4.2  Score=37.11  Aligned_cols=182  Identities=18%  Similarity=0.185  Sum_probs=110.9

Q ss_pred             hHHHHH---HHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015        104 TVVRDK---AVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT  180 (318)
Q Consensus       104 ~~VR~~---a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~  180 (318)
                      ++-|++   ++.++-.+.+...+..+...+.|-+..-+.-++-.|+.-+++.++.+..........++..          
T Consensus        54 enhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseill----------  123 (524)
T KOG4413|consen   54 ENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILL----------  123 (524)
T ss_pred             ccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHH----------
Confidence            445565   7777777777665555566677777766666667888888888887765544322222200          


Q ss_pred             cccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhh-HhhHHH--HHHHhhcCCcHHHHHHH
Q psy14015        181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYL-KTDIIP--MFVNLAQDEQDSVRLLA  256 (318)
Q Consensus       181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~-~~~llp--~l~~ll~D~~~~VR~aa  256 (318)
                                  .....+++.++...-.++.+|-++|.+.+..++.+-.. +.+ ..+++.  .+.++..-.+..+|-..
T Consensus       124 ------------vvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRV  191 (524)
T KOG4413|consen  124 ------------VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRV  191 (524)
T ss_pred             ------------HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHH
Confidence                        23567888888888899999999999999999874211 000 001110  23344444455667777


Q ss_pred             HHHHHHHHhhCChh--hh-hHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh-hhhhhhc
Q psy14015        257 VEACVSIASLLSQS--DV-EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT-TLRLMRH  316 (318)
Q Consensus       257 ~~~l~~l~~~l~~~--~~-~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~-~~~~~~~  316 (318)
                      .+-|..+..+-...  .+ ++-++..+..=++-         .++.-|+.+.|+.- .|-|..|
T Consensus       192 leLIieifSiSpesaneckkSGLldlLeaElkG---------teDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  192 LELIIEIFSISPESANECKKSGLLDLLEAELKG---------TEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             HHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC---------CcceeehhhHHHHHHHHHHHhh
Confidence            77666666433221  12 23366666655553         37788888888753 3444444

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=92.75  E-value=0.12  Score=29.33  Aligned_cols=30  Identities=37%  Similarity=0.677  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015        211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE  248 (318)
Q Consensus       211 ~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~  248 (318)
                      |.||..++.+||.++.        +..+|.+..+++|+
T Consensus         1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d~   30 (30)
T smart00567        1 PLVRHEAAFALGQLGD--------EEAVPALIKALEDE   30 (30)
T ss_pred             CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcCC
Confidence            5689999999998743        34667777777764

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=92.70  E-value=0.26  Score=30.07  Aligned_cols=30  Identities=33%  Similarity=0.310  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELA  225 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~  225 (318)
                      ...+|.+.+++.+++..||+.|+.+|+.++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            457899999999999999999999999876

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4535|consensus

Probab=92.63  E-value=0.3  Score=46.36  Aligned_cols=187  Identities=16%  Similarity=0.116  Sum_probs=106.0

Q ss_pred             HHHHHhc-CccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCc--Cccc---
Q psy14015         17 VLIDELK-NEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNV--GGPE---   86 (318)
Q Consensus        17 ~l~~~l~-~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~--~~~~---   86 (318)
                      .++...+ +++-.+|.++++.+.-.-.+-|.   -.+....-..+...+.|..- +|..++..++.+...+  |-+.   
T Consensus       394 ~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s  473 (728)
T KOG4535|consen  394 TFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS  473 (728)
T ss_pred             HHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH
Confidence            3444443 44455677777766543211111   11333444455566677665 8888888888775432  2111   


Q ss_pred             chhccch-----HH--hhhccCchhHHHHHHHHHHHHHHhhCCh-------hHHhhhHHHHHHHhhcCCCchhhhhhhhh
Q psy14015         87 YVHCLLP-----PL--ESLATVEETVVRDKAVESLRLISAQHSP-------HDLEAHFVPLVQRLASGDWFTSRTSACGL  152 (318)
Q Consensus        87 ~~~~llp-----~l--~~l~~d~~~~VR~~a~~~l~~l~~~~~~-------~~~~~~ilp~~~~l~~d~~~~vR~~a~~~  152 (318)
                      ..+.+..     .+  ...+.-+.+.||..|+++|..+.+.+.+       +.....+...+-.-.......||++||..
T Consensus       474 ~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya  553 (728)
T KOG4535|consen  474 FQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYA  553 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHH
Confidence            1122221     12  1223344689999999999999887753       11111222222111222357799999999


Q ss_pred             hhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHh
Q psy14015        153 FSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVV  228 (318)
Q Consensus       153 l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~  228 (318)
                      +|.++..-.-.           +. +.             .+-..+++.+..+..| .|..||-.||.+|...+.-.
T Consensus       554 ~gNLfkn~a~~-----------lq-~~-------------~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re  605 (728)
T KOG4535|consen  554 MGNLFKNPALP-----------LQ-TA-------------PWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE  605 (728)
T ss_pred             HHHhhcCcccc-----------cc-CC-------------CchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence            98775442210           00 00             2456788999988876 67999999999998777543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=92.56  E-value=1.2  Score=37.17  Aligned_cols=88  Identities=10%  Similarity=0.071  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH---HhhCC
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSI---ASLLS  268 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l---~~~l~  268 (318)
                      ...++|.|.+-+.....--|..|.+.+.++...-|.+.   +...+++-+++.++..+..|..+++.++..+   ++.+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            46789999999998888899999999999988744443   3456777888899999999999999999999   67776


Q ss_pred             hh--hhhHhhHHHHHH
Q psy14015        269 QS--DVEQLVMPTLRQ  282 (318)
Q Consensus       269 ~~--~~~~~l~p~l~~  282 (318)
                      +.  -+...++|.+--
T Consensus       116 ~aLvPyyrqLLp~ln~  131 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNL  131 (183)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            54  223445555443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG0168|consensus

Probab=92.43  E-value=2.8  Score=42.75  Aligned_cols=192  Identities=11%  Similarity=0.048  Sum_probs=118.7

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHH----hhhHHHHHHHhhcCC-
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL----EAHFVPLVQRLASGD-  141 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~ilp~~~~l~~d~-  141 (318)
                      +++...+.+.-+-...|.. ....+-.+|+.+-...++.....|+.-++++....+++.+    .+.++|.+..+++++ 
T Consensus       146 ~g~lgprv~~ll~rt~~~s-asSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~  224 (1051)
T KOG0168|consen  146 FGRLGPRVLQLLHRTIGSS-ASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH  224 (1051)
T ss_pred             ccccchhHHHHhhhccccc-chHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc
Confidence            4444444444443333332 2234556677775555666666666666666655555432    345899999999886 


Q ss_pred             CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh-hcCCCHHHHHHHHHh
Q psy14015        142 WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL-CQDDTPMVRRAAAGK  220 (318)
Q Consensus       142 ~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l-~~D~~~~VR~~aa~~  220 (318)
                      ++.+-..||..+..++.-++...                          +-.+..+.+|+|... ..=+--.|-+.+.++
T Consensus       225 n~DIMl~AcRaltyl~evlP~S~--------------------------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqA  278 (1051)
T KOG0168|consen  225 NFDIMLLACRALTYLCEVLPRSS--------------------------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQA  278 (1051)
T ss_pred             cHHHHHHHHHHHHHHHhhccchh--------------------------heeecccchHHHHHhhhhhhhhHHHHHHHHH
Confidence            57777788777765544433210                          002345568888644 445667888888888


Q ss_pred             hHHHHHHhchhhh----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhcccccc
Q psy14015        221 LGELAKVVEVDYL----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSVQIVD  289 (318)
Q Consensus       221 L~~l~~~~~~~~~----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~D~~~  289 (318)
                      |-.|.+.-+....    ...++.+|..+    +-.+++.|.....++|+.+.++.+  .-..+|.|.++|....+
T Consensus       279 LE~iSR~H~~AiL~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~  349 (1051)
T KOG0168|consen  279 LEKISRRHPKAILQAGALSAVLSYLDFF----SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK  349 (1051)
T ss_pred             HHHHHhhccHHHHhcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc
Confidence            8888875544322    22344444444    335677777788889998877753  34589999999998554

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=92.28  E-value=0.23  Score=30.76  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=19.9

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHH
Q psy14015        235 TDIIPMFVNLAQDEQDSVRLLAVEA  259 (318)
Q Consensus       235 ~~llp~l~~ll~D~~~~VR~aa~~~  259 (318)
                      ..+...+..-+.|+++.||.++++.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4677888888888888888888754

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.85  E-value=2.3  Score=34.81  Aligned_cols=72  Identities=14%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        196 AELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      .-.+..+.+.++|+. ..-..++++++..+.+.+|...  ....++|.|.+.++......|......++.+..++
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv  159 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV  159 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            446677888888887 5566678888888888777653  46789999999999888899999888887776543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.67  E-value=3.5  Score=34.58  Aligned_cols=70  Identities=16%  Similarity=0.124  Sum_probs=42.1

Q ss_pred             hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      +.+++.+.+++-+++..+|..|...+..+...                 +-..|              .+-+|.++.+..
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-----------------GLvnP--------------~~cvp~lIAL~t   55 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-----------------GLVNP--------------KQCVPTLIALET   55 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----------------CCCCh--------------HHHHhHhhhhhC
Confidence            34666666666666667777776665533210                 00011              345677777777


Q ss_pred             CCCHHHHHHHHHhhHHHHHHh
Q psy14015        208 DDTPMVRRAAAGKLGELAKVV  228 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~  228 (318)
                      |+++.+|..|...+..+.+..
T Consensus        56 s~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen   56 SPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             CCChHHHHHHHHHHHHHHHHh
Confidence            777777777777777766543

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=91.43  E-value=11  Score=36.31  Aligned_cols=245  Identities=14%  Similarity=0.141  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhHHHHHHhhChHhHhhchh-hhhhhhcCChHH-HHHHHHHHHcccccCcCcccc---hhccchHHhhhccC
Q psy14015         27 VQLRLNSIKKLSTIALALGQERTRGELI-PFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY---VHCLLPPLESLATV  101 (318)
Q Consensus        27 ~~~R~~~~~~L~~ia~~lg~~~~~~~ll-p~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~l~~d  101 (318)
                      ...|..+++.|+.++..+... ....+. |.|...++.... =|..++-.+.+++........   .+.+.+.|...+.+
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~-~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~  179 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPES-SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN  179 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence            457999999999999887554 333333 356677777776 777788888888765432211   13455555555553


Q ss_pred             chh-----------HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-hHHHHH
Q psy14015        102 EET-----------VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-VKAELR  169 (318)
Q Consensus       102 ~~~-----------~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~  169 (318)
                      +..           .+|..+..-+..+.+.--   +...-+|.+........ .   .-.+       .++-+ ..+-..
T Consensus       180 ~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~---~~~~klp~l~~~v~~~~-~---~~p~-------~fsi~~A~~v~~  245 (441)
T PF12054_consen  180 PEPPYYDELVPSLKRLRTECQQLLATFRDVGK---VPPSKLPSLPVVVQGEP-E---AGPE-------AFSIEQAEKVVG  245 (441)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChhhcccccccccccc-c---cCCc-------cCCHHHHHHHHH
Confidence            332           122222222222211100   00001111110001000 0   0000       00000 011111


Q ss_pred             HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC---CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015        170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD---DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ  246 (318)
Q Consensus       170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D---~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~  246 (318)
                      ..|..+....++.-|......-++.+..+....-.+-..   -+-.|..++|.++-.+...  +++...-|-|.....=+
T Consensus       246 ~~~~~l~~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l--P~KLnPiIrpLMdSIK~  323 (441)
T PF12054_consen  246 EDFEKLKKSLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL--PKKLNPIIRPLMDSIKR  323 (441)
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCccHHHHHHHHHhhc
Confidence            233444444433211100000011223333333222222   2334555555555555432  34444556677777778


Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhccccc
Q psy14015        247 DEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll~D~~  288 (318)
                      .++...+..++.++..+.+.+..  ..-.+.|+..|+.+|+.+.
T Consensus       324 Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~  367 (441)
T PF12054_consen  324 EENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT  367 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence            88999999999999999987742  2334678888888886533

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG2011|consensus

Probab=91.41  E-value=5.3  Score=41.93  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=61.1

Q ss_pred             HhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh---CCh-hhhhHhhHHH
Q psy14015        204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL---LSQ-SDVEQLVMPT  279 (318)
Q Consensus       204 ~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~---l~~-~~~~~~l~p~  279 (318)
                      .--.|-.+.+|..|+..||..+.....-.+....+-++-=.+.|-+..||..++.+|..+.+.   .++ +.+.+..-.-
T Consensus       294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R  373 (1048)
T KOG2011|consen  294 HRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR  373 (1048)
T ss_pred             eecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            334789999999999999999998876666666788888889999999999999999998865   222 2233333344


Q ss_pred             HHHhc
Q psy14015        280 LRQCS  284 (318)
Q Consensus       280 l~~ll  284 (318)
                      ++.+.
T Consensus       374 IVeMa  378 (1048)
T KOG2011|consen  374 IVEMA  378 (1048)
T ss_pred             HHHHH
Confidence            55555

>KOG2274|consensus

Probab=91.25  E-value=3.2  Score=42.55  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=58.9

Q ss_pred             chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      .+..+...+.+++-|++..+|.+++++...++...=++. +.+++|.+.+++.+.+..-=..+..++..+..-+
T Consensus        87 ~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~-WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev  159 (1005)
T KOG2274|consen   87 VKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDE-WPELVPFILKLLSSGNENSIHGAMRVLAELSDEV  159 (1005)
T ss_pred             HHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchh-hHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence            456677788888889999999999999999998765543 5889999999999887776677778888777544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=91.15  E-value=7.1  Score=35.04  Aligned_cols=153  Identities=19%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             HHHHHHh-hCChhHHh---hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchh
Q psy14015        113 SLRLISA-QHSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW  188 (318)
Q Consensus       113 ~l~~l~~-~~~~~~~~---~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~  188 (318)
                      ++.-+.. ..+...+.   ..++|.+..++.|.+..+|.-++.++..++..+.......+    .   + .+        
T Consensus        99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L----~---~-tG--------  162 (282)
T PF10521_consen   99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDIL----R---R-TG--------  162 (282)
T ss_pred             HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHH----H---H-cC--------
Confidence            3444444 55443333   45899999999999999999999999888776654320000    0   0 00        


Q ss_pred             hcCccchHHHHHHHHHhhc--------CCCHHHHHHHHHhhHHHHHHhch---h--------hhHhhHHHHHHHhhcCCc
Q psy14015        189 ECGSGVKAELRSHFRNLCQ--------DDTPMVRRAAAGKLGELAKVVEV---D--------YLKTDIIPMFVNLAQDEQ  249 (318)
Q Consensus       189 ~~~~~~~~~ll~~l~~l~~--------D~~~~VR~~aa~~L~~l~~~~~~---~--------~~~~~llp~l~~ll~D~~  249 (318)
                           ..+-+.+.+...+.        |+...+=..+..++-.++.....   +        .+.+.++..+....+-+.
T Consensus       163 -----l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~  237 (282)
T PF10521_consen  163 -----LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSY  237 (282)
T ss_pred             -----hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCc
Confidence                 01111222222222        45555555666666666543210   0        111223333333334445


Q ss_pred             HHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhccc
Q psy14015        250 DSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSVQ  286 (318)
Q Consensus       250 ~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~D  286 (318)
                      ..+|...+..+..+...+|...+  .+.++|.+.+.+.|
T Consensus       238 ~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n  276 (282)
T PF10521_consen  238 PRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN  276 (282)
T ss_pred             hhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence            88999999999999999988754  46799999999988

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.06  E-value=0.61  Score=28.41  Aligned_cols=30  Identities=27%  Similarity=0.195  Sum_probs=27.7

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .-.+|.+.+++++++..||..++.++.+++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            458999999999999999999999999886

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.52  E-value=13  Score=33.73  Aligned_cols=66  Identities=15%  Similarity=0.060  Sum_probs=36.9

Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh--hhHHHHHHHhhcC----CCchhhhhhhhhhhhhc
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE--AHFVPLVQRLASG----DWFTSRTSACGLFSVCY  157 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~ilp~~~~l~~d----~~~~vR~~a~~~l~~~~  157 (318)
                      .-|++. ++..+|..+...|...+..+....+.....  ..+++.+.+.+++    +.......++..++.++
T Consensus       107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL  178 (312)
T PF03224_consen  107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL  178 (312)
T ss_dssp             HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence            344454 777779999999999999999887653322  2344444443332    33334466666666554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.47  E-value=6.2  Score=31.53  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      ++.+..+.+-++..+++|-..|..-|-.+..++|..    .....++..+.++++ .+...||..++..+...+..|+.+
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            677888888889999999999999999999888753    334457777777776 578899999999999999988765


Q ss_pred             hhhHhhHHH
Q psy14015        271 DVEQLVMPT  279 (318)
Q Consensus       271 ~~~~~l~p~  279 (318)
                      .....+...
T Consensus       120 ~~l~~i~~~  128 (142)
T cd03569         120 PQLKYVVDT  128 (142)
T ss_pred             cccHHHHHH
Confidence            433333333

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2160|consensus

Probab=90.44  E-value=5.2  Score=36.68  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHHHhhCChh-HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015        103 ETVVRDKAVESLRLISAQHSPH-DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT  180 (318)
Q Consensus       103 ~~~VR~~a~~~l~~l~~~~~~~-~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~  180 (318)
                      +..=|+.|+.-|.++++...-. ++.. -.++.+..++++....+|..|+..+|.+...-+.. +..+            
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~-Qe~v------------  162 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS-QEQV------------  162 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH-HHHH------------
Confidence            3556788899999988877542 2222 23334444889999999999999999876543321 1111            


Q ss_pred             cccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhh-HhhHHHHHHHhhcC--CcHHHHHH
Q psy14015        181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYL-KTDIIPMFVNLAQD--EQDSVRLL  255 (318)
Q Consensus       181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~-~~~llp~l~~ll~D--~~~~VR~a  255 (318)
                             .+.     ..+-..+..+..|..-.+|..|..+++.+.....+  ..+ .-.=+..+...+++  .+...++.
T Consensus       163 -------~E~-----~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK  230 (342)
T KOG2160|consen  163 -------IEL-----GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRK  230 (342)
T ss_pred             -------HHc-----ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence                   110     11223333444678889999999999999976532  211 11123455566666  45556666


Q ss_pred             HHHHHHHHHh
Q psy14015        256 AVEACVSIAS  265 (318)
Q Consensus       256 a~~~l~~l~~  265 (318)
                      ++.-++.+.+
T Consensus       231 ~~~Ll~~Ll~  240 (342)
T KOG2160|consen  231 ALFLLSLLLQ  240 (342)
T ss_pred             HHHHHHHHHH
Confidence            6666776664

>KOG2160|consensus

Probab=90.30  E-value=3.5  Score=37.78  Aligned_cols=99  Identities=15%  Similarity=0.117  Sum_probs=66.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--hhhhHh--hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh-
Q psy14015        199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKT--DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE-  273 (318)
Q Consensus       199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~~~~~~--~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~-  273 (318)
                      ++.++.++++.+..+|..|+.-+|.++++=.  ++.+.+  .+-..+..+.+|....+|..+..++..+...+.+-... 
T Consensus       126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f  205 (342)
T KOG2160|consen  126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF  205 (342)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4555559999999999999999999997532  222222  23345566668888999999999999988766443211 


Q ss_pred             -H-hhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        274 -Q-LVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       274 -~-~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                       . +=...|..++.+          ...+||+..-.
T Consensus       206 l~~~G~~~L~~vl~~----------~~~~~~lkrK~  231 (342)
T KOG2160|consen  206 LKLNGYQVLRDVLQS----------NNTSVKLKRKA  231 (342)
T ss_pred             HhcCCHHHHHHHHHc----------CCcchHHHHHH
Confidence             1 123456677777          55666665543

>KOG1992|consensus

Probab=90.28  E-value=12  Score=38.11  Aligned_cols=143  Identities=16%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             hHHHHHHHhcCccHHH-HHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCChH--HHHHHHHHHH-cccccC-----
Q psy14015         14 PIAVLIDELKNEDVQL-RLNSIKKLSTIALALGQER---TRGELIPFLTETIYDED--EVLLALAEQL-GTFTPN-----   81 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~-R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~~--~VR~~aa~~L-~~l~~~-----   81 (318)
                      |+.-....++..|... |+.++.-+..+++.+...-   +..++-..+.+...+++  |..+-.+-.| ..++..     
T Consensus       362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~  441 (960)
T KOG1992|consen  362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK  441 (960)
T ss_pred             HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence            6777778888888876 5577777788877653211   22344444555555533  3222222221 112210     


Q ss_pred             ---------cCc-ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhh
Q psy14015         82 ---------VGG-PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG  151 (318)
Q Consensus        82 ---------~~~-~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~  151 (318)
                               ++- ..+...++|-|.+--..+.+.+|..+++-+..+=++++++.... ++|.+.+.++.++..+-..||.
T Consensus       442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~-~~p~li~~L~a~s~vvhsYAA~  520 (960)
T KOG1992|consen  442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMA-LLPRLIRFLEAESRVVHSYAAI  520 (960)
T ss_pred             cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHH-HHHHHHHhccCcchHHHHHHHH
Confidence                     111 23345566665554345567788888887777778888877666 7888888888777666666666


Q ss_pred             hhhhhc
Q psy14015        152 LFSVCY  157 (318)
Q Consensus       152 ~l~~~~  157 (318)
                      .+.++.
T Consensus       521 aiEkil  526 (960)
T KOG1992|consen  521 AIEKLL  526 (960)
T ss_pred             HHHhcc
Confidence            555543

>KOG2274|consensus

Probab=90.18  E-value=25  Score=36.38  Aligned_cols=133  Identities=16%  Similarity=0.161  Sum_probs=76.5

Q ss_pred             CCCCCchHHHHHHHh-c-CccHHHHHHHHHhHHHHHHh--hChHhHhhchhhhhh-hhcCChHH-HHHHHHHHHcccccC
Q psy14015          8 PDDSLYPIAVLIDEL-K-NEDVQLRLNSIKKLSTIALA--LGQERTRGELIPFLT-ETIYDEDE-VLLALAEQLGTFTPN   81 (318)
Q Consensus         8 ~~~~l~~i~~l~~~l-~-~~~~~~R~~~~~~L~~ia~~--lg~~~~~~~llp~l~-~l~~D~~~-VR~~aa~~L~~l~~~   81 (318)
                      -++.+.++..+++.. . ++-|..-..+...++.-+..  ..+. .....+.... .+..|..+ +|..+++.+..+++.
T Consensus       443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~  521 (1005)
T KOG2274|consen  443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQ-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV  521 (1005)
T ss_pred             hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchh-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc
Confidence            456677766555443 3 44455433444444433322  2233 2233333333 34455555 999999998877631


Q ss_pred             cCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHH----HHHHhhcCC
Q psy14015         82 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVP----LVQRLASGD  141 (318)
Q Consensus        82 ~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp----~~~~l~~d~  141 (318)
                      ---....+.++..+.++..+.+++|-..-+++|...+..=++..  ....+.|    ++.++.+|+
T Consensus       522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP  587 (1005)
T KOG2274|consen  522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP  587 (1005)
T ss_pred             eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc
Confidence            11122335566778888888899999999999998887654421  2233445    445556666

>KOG1848|consensus

Probab=89.76  E-value=8.1  Score=41.61  Aligned_cols=107  Identities=20%  Similarity=0.185  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc----hh----hhHhhHHHHHHHhhc--CCc-------HHHHHHHH
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE----VD----YLKTDIIPMFVNLAQ--DEQ-------DSVRLLAV  257 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~----~~----~~~~~llp~l~~ll~--D~~-------~~VR~aa~  257 (318)
                      +=.++-.+.+++.|+.++||..|++.|-.+...-|    +.    .++..++|.+..--.  -.+       ..--..++
T Consensus       995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen  995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred             HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence            44577788899999999999999999999987654    22    235556666651110  011       12235677


Q ss_pred             HHHHHHHhhCChh-----------hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhh
Q psy14015        258 EACVSIASLLSQS-----------DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTL  311 (318)
Q Consensus       258 ~~l~~l~~~l~~~-----------~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~  311 (318)
                      -.|+.+++.|+..           +.-+.++..+..+..|          ..+++.+.+|++-.=
T Consensus      1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~----------~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD----------ISPEISLSAIKALQE 1129 (1610)
T ss_pred             hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc----------CChHhHHHHHHHHHH
Confidence            7888888877553           1235688899999999          999999999987543

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=89.74  E-value=2.1  Score=39.69  Aligned_cols=133  Identities=19%  Similarity=0.198  Sum_probs=74.3

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH--HH--HHHHHHHcccccC------cCccc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE--VL--LALAEQLGTFTPN------VGGPE   86 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~--VR--~~aa~~L~~l~~~------~~~~~   86 (318)
                      .+.+.+-+++...|..+...|..       +.-...|+|++..++.+.--  +.  -.....+..++..      +.-+.
T Consensus       182 ~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~  254 (343)
T cd08050         182 EITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP  254 (343)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence            33455556666667776666554       22346788998887755321  22  2222333333221      11122


Q ss_pred             chhccchHHhhhc----------cCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCC--Cchhhhhhhhh
Q psy14015         87 YVHCLLPPLESLA----------TVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGD--WFTSRTSACGL  152 (318)
Q Consensus        87 ~~~~llp~l~~l~----------~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~--~~~vR~~a~~~  152 (318)
                      +...++|.+..++          .++.+..|..|+..+..++..++..  .+...+.-.+.+.+.|+  .....++|+..
T Consensus       255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G  334 (343)
T cd08050         255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG  334 (343)
T ss_pred             hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence            3444666655443          3456899999999999999988764  23333444444444544  34457777665


Q ss_pred             hhhh
Q psy14015        153 FSVC  156 (318)
Q Consensus       153 l~~~  156 (318)
                      |..+
T Consensus       335 L~~l  338 (343)
T cd08050         335 LSAL  338 (343)
T ss_pred             HHHh
Confidence            5543

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=89.73  E-value=0.2  Score=27.72  Aligned_cols=27  Identities=41%  Similarity=0.674  Sum_probs=16.9

Q ss_pred             HHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015        213 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD  247 (318)
Q Consensus       213 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D  247 (318)
                      ||..++.+||.++.        +..+|.+.+.++|
T Consensus         1 VR~~Aa~aLg~igd--------~~ai~~L~~~L~d   27 (27)
T PF03130_consen    1 VRRAAARALGQIGD--------PRAIPALIEALED   27 (27)
T ss_dssp             HHHHHHHHHGGG-S--------HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC--------HHHHHHHHHHhcC
Confidence            67888888887764        3455666555543

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.57  E-value=2.8  Score=33.03  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhcCCC----HHHHHHHHHhhHHHHHHhchhhhHh-hHHHHHHHhhcCCcHHHHHHHHHHH
Q psy14015        196 AELRSHFRNLCQDDT----PMVRRAAAGKLGELAKVVEVDYLKT-DIIPMFVNLAQDEQDSVRLLAVEAC  260 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~----~~VR~~aa~~L~~l~~~~~~~~~~~-~llp~l~~ll~D~~~~VR~aa~~~l  260 (318)
                      ..++..+.+.++...    .++...+.+++..+...+..+.+.+ .+++.+.+++.+++-  |.+|+++|
T Consensus        81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen   81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence            345555555554322    7888888888888887666555444 488888888877664  67776653

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=89.34  E-value=3.9  Score=39.99  Aligned_cols=68  Identities=21%  Similarity=0.167  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       197 ~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .++.-+...+.++.+++|-++-.+|+.++..+....      ....+.-.+.....+....+|-++++-...+.
T Consensus       414 ~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f  487 (501)
T PF13001_consen  414 SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF  487 (501)
T ss_pred             HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence            455555555689999999999999999998775311      11122223444556777888888887655544

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=89.33  E-value=8.3  Score=32.20  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHH---HHHhchhh--hHhhHHHHHHHhhc-----------CCcHHHHHHHHHH
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGEL---AKVVEVDY--LKTDIIPMFVNLAQ-----------DEQDSVRLLAVEA  259 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l---~~~~~~~~--~~~~llp~l~~ll~-----------D~~~~VR~aa~~~  259 (318)
                      .++++.+...++-.+++|..++..+|-.+   ...+|+..  ....++|.+.-+.+           .....++....++
T Consensus        79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~et  158 (183)
T PF10274_consen   79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQET  158 (183)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHH
Confidence            56788888999999999999999999999   55556432  13345555542221           1234566777777


Q ss_pred             HHHHHhhCChhhh
Q psy14015        260 CVSIASLLSQSDV  272 (318)
Q Consensus       260 l~~l~~~l~~~~~  272 (318)
                      +..+-..-|++.+
T Consensus       159 L~~lE~~GG~dA~  171 (183)
T PF10274_consen  159 LELLERNGGPDAF  171 (183)
T ss_pred             HHHHHHhcChhHH
Confidence            7777777777654

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=89.24  E-value=1.7  Score=36.89  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=45.5

Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                      +...+.+...+.+++..+|.++...+......    ...+.++..+..+.+|+.+.+|++....|..+..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~  184 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK  184 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            44667788888888888888887666555544    2223466777777788888888888777765543

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.16  E-value=7.6  Score=31.13  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhCCh
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D-~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      -++.+..+.+-+++.+++|-..|..-|..++.++|..    .....++..+.+++.+ ....||..+...+...+..|..
T Consensus        35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            3677888888889999999999999999999999863    3345688888889988 7889999999999999998875


Q ss_pred             hh
Q psy14015        270 SD  271 (318)
Q Consensus       270 ~~  271 (318)
                      +.
T Consensus       115 ~~  116 (144)
T cd03568         115 DP  116 (144)
T ss_pred             Cc
Confidence            43

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.03  E-value=2.1  Score=35.94  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                      ...++.+++++.+++..||..|..-+..+.+. |=- --...+|.+..|..||+..+|..|...+..+.+
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e   74 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHE   74 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence            34567778899999999999999999877752 200 014699999999999999999999888888764

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=88.81  E-value=13  Score=31.42  Aligned_cols=67  Identities=21%  Similarity=0.118  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      +.+.+.+.+.+++++.-+|++++..+......    ...+.++..+..++.|+++.||.+...+|..++..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            34678888999999988888887776555443    23467888999999999999999999998888854

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=88.60  E-value=1.2  Score=32.69  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC--HHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT--PMVRRAA  217 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~--~~VR~~a  217 (318)
                      ++.|..|..|+.+++.++.+.+...                           +..+..+...+.+.+.|+.  ...+.-|
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~---------------------------~~L~~Ri~~tl~k~l~d~~~~~~t~YGA   69 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSY---------------------------PTLQPRITRTLLKALLDPKKPLGTHYGA   69 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhcccc---------------------------chHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3468888888888776665544321                           0234567788888888765  6688888


Q ss_pred             HHhhHHHHHHhchhhhHhhHHHHH
Q psy14015        218 AGKLGELAKVVEVDYLKTDIIPMF  241 (318)
Q Consensus       218 a~~L~~l~~~~~~~~~~~~llp~l  241 (318)
                      +..|.+++    ++.+..-++|-+
T Consensus        70 i~gL~~lG----~~~vr~~ilP~l   89 (92)
T PF07571_consen   70 IVGLSALG----PEAVRALILPNL   89 (92)
T ss_pred             HHHHHHHH----HHHHHHhhccCc
Confidence            88888874    455555566644

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=88.52  E-value=4  Score=37.77  Aligned_cols=132  Identities=13%  Similarity=0.090  Sum_probs=75.2

Q ss_pred             hcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCch-hHHH--HHHHHHHHHHHhh------CChhHHhhh
Q psy14015         60 TIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEE-TVVR--DKAVESLRLISAQ------HSPHDLEAH  129 (318)
Q Consensus        60 l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~-~~VR--~~a~~~l~~l~~~------~~~~~~~~~  129 (318)
                      .+.++++ -|..+...|..       ..-.+.++|.|..++.+.- ..+.  ...+..+..++..      +.-+.+...
T Consensus       186 a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~  258 (343)
T cd08050         186 ALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ  258 (343)
T ss_pred             HHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence            3333344 67776666552       2234668888888766541 2222  2223333333332      223556666


Q ss_pred             HHHHHHHh------hc----CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015        130 FVPLVQRL------AS----GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR  199 (318)
Q Consensus       130 ilp~~~~l------~~----d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll  199 (318)
                      ++|.+...      +.    ++.|..|..|+.+++.++.+++....                           .....+.
T Consensus       259 Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~---------------------------~l~~ri~  311 (343)
T cd08050         259 LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN---------------------------TLQPRIT  311 (343)
T ss_pred             HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC---------------------------cHHHHHH
Confidence            88877653      22    34588999998888877666554211                           1345566


Q ss_pred             HHHHHhhcCCC--HHHHHHHHHhhHHHH
Q psy14015        200 SHFRNLCQDDT--PMVRRAAAGKLGELA  225 (318)
Q Consensus       200 ~~l~~l~~D~~--~~VR~~aa~~L~~l~  225 (318)
                      ..+.+.+.|+.  ......|+..|+.++
T Consensus       312 ~tl~k~l~d~~~~~~~~YGAi~GL~~lG  339 (343)
T cd08050         312 RTLLKALLDPKKPLTTHYGAIVGLSALG  339 (343)
T ss_pred             HHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence            67777777665  334777777777665

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG2149|consensus

Probab=88.41  E-value=5.4  Score=37.22  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=81.3

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc---c
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT---RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE---Y   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~---~   87 (318)
                      +..++..+++-+..+|..+...|-.+-+.- +...   ...+++.+..+..|++. ||.+....+..+....+.+.   .
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~  138 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM  138 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence            567788999999999999999999986552 2222   34566666677777766 99999988887665443322   2


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE  127 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~  127 (318)
                      ...++|.+......--+.||.-++.-+.-++..+++....
T Consensus       139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~  178 (393)
T KOG2149|consen  139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR  178 (393)
T ss_pred             HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence            2335555555556667899999999999999999885433

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.64  E-value=5.9  Score=36.06  Aligned_cols=131  Identities=9%  Similarity=0.089  Sum_probs=58.5

Q ss_pred             HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-  208 (318)
Q Consensus       130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-  208 (318)
                      +-|++. +++.+++.+...|+.++..++..-+.....                           ..+..++.+.+.+.+ 
T Consensus       107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~---------------------------~~~~~l~~ll~~L~~~  158 (312)
T PF03224_consen  107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEK---------------------------LVKEALPKLLQWLSSQ  158 (312)
T ss_dssp             HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HH---------------------------HHHHHHHHHHHHHH-T
T ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccc---------------------------hHHHHHHHHHHHHHHh
Confidence            455554 666678888888888888765544332111                           002334444444332 


Q ss_pred             ---CCHHHHHHHHHhhHHHHHHhc--hhhhHhhHHHHHHHhh-----cCCcHHHHHHHHHHHHHHHhhCChhhh----hH
Q psy14015        209 ---DTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLA-----QDEQDSVRLLAVEACVSIASLLSQSDV----EQ  274 (318)
Q Consensus       209 ---~~~~VR~~aa~~L~~l~~~~~--~~~~~~~llp~l~~ll-----~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~  274 (318)
                         ++.++...++.+|+.+...-.  .-......++.+..++     .+..-.++-..-..+--..-.|.++..    ..
T Consensus       159 l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~  238 (312)
T PF03224_consen  159 LSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK  238 (312)
T ss_dssp             T-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred             hcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc
Confidence               445566777777777764211  1111234555555555     233333333222222223333444321    23


Q ss_pred             hhHHHHHHhccccc
Q psy14015        275 LVMPTLRQCSVQIV  288 (318)
Q Consensus       275 ~l~p~l~~ll~D~~  288 (318)
                      .++|.+...+++..
T Consensus       239 ~~i~~L~~i~~~~~  252 (312)
T PF03224_consen  239 YLIPLLADILKDSI  252 (312)
T ss_dssp             SHHHHHHHHHHH--
T ss_pred             chHHHHHHHHHhcc
Confidence            47777777777644

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2973|consensus

Probab=87.30  E-value=4.3  Score=36.67  Aligned_cols=20  Identities=35%  Similarity=0.247  Sum_probs=8.7

Q ss_pred             hhhccCchhHHHHHHHHHHH
Q psy14015         96 ESLATVEETVVRDKAVESLR  115 (318)
Q Consensus        96 ~~l~~d~~~~VR~~a~~~l~  115 (318)
                      ..|+.+.++.||.+|+.++.
T Consensus         9 v~ll~~~sP~v~~~AV~~l~   28 (353)
T KOG2973|consen    9 VELLHSLSPPVRKAAVEHLL   28 (353)
T ss_pred             HHHhccCChHHHHHHHHHHh
Confidence            33444444444444444433

>KOG2081|consensus

Probab=87.17  E-value=16  Score=35.59  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=64.2

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC--CCch
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG--DWFT  144 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d--~~~~  144 (318)
                      -|..+...+...+-.+|+....+.++-.+..  ..+.+..-++++..+-.+++...++.  +.++|-+.++..+  ....
T Consensus       368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~  443 (559)
T KOG2081|consen  368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQAP  443 (559)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccchh
Confidence            7999999999999999987665544444444  45568888999999999999887642  4567777665443  2355


Q ss_pred             hhhhhhhhhhhhc
Q psy14015        145 SRTSACGLFSVCY  157 (318)
Q Consensus       145 vR~~a~~~l~~~~  157 (318)
                      +|+.++.++|.+.
T Consensus       444 ~~~ts~ll~g~~~  456 (559)
T KOG2081|consen  444 LRYTSILLLGEYS  456 (559)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=86.71  E-value=4.3  Score=31.38  Aligned_cols=69  Identities=20%  Similarity=0.255  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhch--hhhHh-hHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        196 AELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKT-DIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       196 ~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~--~~~~~-~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      -+++..+.+++. ..++.+-..|+.-+|+++.....  ..+.. ..-..+..|++++++.||.-|+.++..+.
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            467888888884 44677888899999999987632  22211 25567789999999999999998887764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=86.42  E-value=0.8  Score=25.73  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       250 ~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      |.||..++.+|+++.    .    +..+|.|.++++|
T Consensus         1 ~~vR~~aa~aLg~~~----~----~~a~~~L~~~l~d   29 (30)
T smart00567        1 PLVRHEAAFALGQLG----D----EEAVPALIKALED   29 (30)
T ss_pred             CHHHHHHHHHHHHcC----C----HhHHHHHHHHhcC
Confidence            579999999999874    2    3456788888887

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG3036|consensus

Probab=86.29  E-value=3.2  Score=36.22  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             cchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhH----HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc-
Q psy14015         86 EYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHD----LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR-  159 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~----~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~-  159 (318)
                      ...-+++|.+..-.++. .+..|..++..++.+.+.-..+.    ....++|...+.....+...+..|+.++++|+.. 
T Consensus       120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD  199 (293)
T KOG3036|consen  120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDD  199 (293)
T ss_pred             cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhcc
Confidence            34566888887765544 68889999999999998776653    2234899998888888888888999999887532 


Q ss_pred             cCcchH-------HHHHHHHH----hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q psy14015        160 VTAGVK-------AELRSHFR----NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL  224 (318)
Q Consensus       160 ~~~~~~-------~~l~~~~~----~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l  224 (318)
                      .+-..-       +.....++    ++.+..++           ..-++.+.++..++  ++++.|.+...+++.-
T Consensus       200 ~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~-----------RllKhviRcYlrLs--dnprar~aL~~clPd~  262 (293)
T KOG3036|consen  200 VGLYYICQTAERFSAVALVLGKMVFQLVSMPSP-----------RLLKHVIRCYLRLS--DNPRARAALRSCLPDQ  262 (293)
T ss_pred             ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHhc--CCHHHHHHHHhhCcch
Confidence            111100       01111121    22222222           24466777777775  4567777766666644

>KOG1851|consensus

Probab=86.28  E-value=19  Score=39.41  Aligned_cols=162  Identities=12%  Similarity=0.018  Sum_probs=87.0

Q ss_pred             HhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccc--cCcC-cccchhccchHHhhhccCchhHHHHHHHHHHHH
Q psy14015         42 LALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFT--PNVG-GPEYVHCLLPPLESLATVEETVVRDKAVESLRL  116 (318)
Q Consensus        42 ~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~--~~~~-~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~  116 (318)
                      ...|+. ...+++-.+..+..| ..| ||.++.+-+-.+.  ..++ .+...+.|--++..++.|.+-.||+.|+++|..
T Consensus      1517 ~~~~~~-l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1517 SWIGHH-LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred             hccchh-hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence            345555 445556666544444 567 9988666554432  1222 233445677788999999988999999999988


Q ss_pred             HHhhCChhHHhhhHHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccch
Q psy14015        117 ISAQHSPHDLEAHFVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK  195 (318)
Q Consensus       117 l~~~~~~~~~~~~ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~  195 (318)
                      +..-.-........-+..... .+.....-+..|+..+|.++..++-.+..++                           
T Consensus      1596 l~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wi--------------------------- 1648 (1710)
T KOG1851|consen 1596 LLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWI--------------------------- 1648 (1710)
T ss_pred             HHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhh---------------------------
Confidence            875322111111111111111 1222233344555555554433332211111                           


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY  232 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~  232 (318)
                      .+.+..+.....|+ ..+++++-+.+.++-.....+|
T Consensus      1649 p~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D~W 1684 (1710)
T KOG1851|consen 1649 PKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHADTW 1684 (1710)
T ss_pred             HHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhhhh
Confidence            22233333444444 7888888888888877655444

>KOG1837|consensus

Probab=86.10  E-value=1.6  Score=47.16  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=58.3

Q ss_pred             CCCCCCCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHcccccC
Q psy14015          6 SAPDDSLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPN   81 (318)
Q Consensus         6 ~~~~~~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~   81 (318)
                      .++++.+.| +.+.+....++.+..|..++..+..+...+|...  ...+++||+.++++|+++ |-+.+.+....+-..
T Consensus      1533 ~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~ 1612 (1621)
T KOG1837|consen 1533 VADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEV 1612 (1621)
T ss_pred             cCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            344444777 5667778889999999999999999988888764  356789999999998776 876666655555444


Q ss_pred             cCc
Q psy14015         82 VGG   84 (318)
Q Consensus        82 ~~~   84 (318)
                      +|.
T Consensus      1613 lGE 1615 (1621)
T KOG1837|consen 1613 LGE 1615 (1621)
T ss_pred             hch
Confidence            443

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=85.06  E-value=20  Score=30.53  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=76.4

Q ss_pred             hcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHH-HHHcccccCcCcccchhccchHHhhh
Q psy14015         22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALA-EQLGTFTPNVGGPEYVHCLLPPLESL   98 (318)
Q Consensus        22 l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa-~~L~~l~~~~~~~~~~~~llp~l~~l   98 (318)
                      .++...+.|..++..|..--..+.++     -++.+..++.+ +.| +=...+ ..++.+..  .    .+...+.+..+
T Consensus        55 w~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~--~----~~~~~~~l~~W  123 (208)
T cd07064          55 WQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLA--D----YPEFEPVMDEW  123 (208)
T ss_pred             HcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHh--C----ChhHHHHHHHH
Confidence            34554567777777666643333333     25666666665 445 333333 33344321  1    12236788999


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                      ..|++--.|.+|+-+...+.+....    +.+..++..+++|+.+.++++....|..+...
T Consensus       124 ~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         124 STDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            9999988888888776666655333    34666677888999999999987777655443

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=84.50  E-value=14  Score=30.31  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=63.3

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhch---hhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc-ccc-
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGEL---IPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG-PEY-   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~l---lp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~-~~~-   87 (318)
                      ...+-..++|.++..|-..+.-+..+....|.+.+...-   +..+...++.+ .. ++..+...|..+....++ +.. 
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~  106 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT  106 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence            455667889999999999888888888777666543333   33334444443 33 888888888877654432 111 


Q ss_pred             -------hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015         88 -------VHCLLPPLESLATVEETVVRDKAVESLRLISAQHS  122 (318)
Q Consensus        88 -------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  122 (318)
                             ...+++.+.+++++  ..+...+++++..+....+
T Consensus       107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence                   12233333333333  4555566666666665543

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=83.83  E-value=1.9  Score=26.67  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHh
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGK  220 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~  220 (318)
                      .+.++..+.+.+.|+++.||+++...
T Consensus        16 ~~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   16 SSDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            36788999999999999999998764

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=83.80  E-value=15  Score=29.41  Aligned_cols=76  Identities=12%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-  208 (318)
Q Consensus       130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-  208 (318)
                      .+..+.+-++..+..+-..|..++..+....+..+..++                         ..+.++..+.+++++ 
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev-------------------------ask~Fl~eL~kl~~~~   92 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV-------------------------ASRDFTQELKKLINDR   92 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH-------------------------hhHHHHHHHHHHhccc
Confidence            444455555666777777788887777766666555443                         346677888888888 


Q ss_pred             CCHHHHHHHHHhhHHHHHHhch
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEV  230 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~  230 (318)
                      ....||.-+..-+...+..+..
T Consensus        93 ~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          93 VHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCC
Confidence            6789999999999999887764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=83.55  E-value=36  Score=31.25  Aligned_cols=198  Identities=11%  Similarity=0.038  Sum_probs=106.3

Q ss_pred             chhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc----ccC
Q psy14015         87 YVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP----RVT  161 (318)
Q Consensus        87 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~----~~~  161 (318)
                      ....++..+..++. +.++......+.++..=+..+ ...+...++..+.+-++|+...+|..-...++.++.    ...
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~   97 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS   97 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence            34445555555544 457777888888888877766 233445577888888899877799888888777664    111


Q ss_pred             ----cchHHHHHHHHHhhccCCCccccc-----c-hhhc------Cc-------------cchHH-H-HHHHH-HhhcCC
Q psy14015        162 ----AGVKAELRSHFRNLCQDDTPMQQG-----H-VWEC------GS-------------GVKAE-L-RSHFR-NLCQDD  209 (318)
Q Consensus       162 ----~~~~~~l~~~~~~l~~~~~~~vR~-----~-v~~~------~~-------------~~~~~-l-l~~l~-~l~~D~  209 (318)
                          ..+-..+.+.+.+......+....     . +...      ..             .-+.. + -+-+. +++.++
T Consensus        98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~  177 (339)
T PF12074_consen   98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE  177 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence                112223333344433433332110     0 0000      00             00011 1 12222 223322


Q ss_pred             C--HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc
Q psy14015        210 T--PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE--QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV  285 (318)
Q Consensus       210 ~--~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~--~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~  285 (318)
                      +  |-+|... .-+.........+. ...+-.++..++..+  .|.||+.+...+..+...-+.. ....++..+...+.
T Consensus       178 d~~w~~~al~-~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~  254 (339)
T PF12074_consen  178 DLCWLLRALE-ALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS  254 (339)
T ss_pred             HHHHHHHHHH-HHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence            2  4444322 11122222112222 244566777888888  9999999999998887665544 45567777777776


Q ss_pred             ccc
Q psy14015        286 QIV  288 (318)
Q Consensus       286 D~~  288 (318)
                      +..
T Consensus       255 ~~~  257 (339)
T PF12074_consen  255 SSE  257 (339)
T ss_pred             hcc
Confidence            533

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=83.22  E-value=21  Score=28.30  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcCCcH--H--HHHHHHHHHHHHHhhC
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQDEQD--S--VRLLAVEACVSIASLL  267 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D~~~--~--VR~aa~~~l~~l~~~l  267 (318)
                      ++.+..+.+-++..++.|...|..-|..+..++|...    ....++..+..++.++..  .  ||..+...+...+..|
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            6778889999999999999999999999999888643    223467777776665433  2  9999999999999999


Q ss_pred             Chhhh
Q psy14015        268 SQSDV  272 (318)
Q Consensus       268 ~~~~~  272 (318)
                      +....
T Consensus       121 ~~~~~  125 (140)
T PF00790_consen  121 KSDPE  125 (140)
T ss_dssp             TTSTT
T ss_pred             CCCCC
Confidence            55433

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=83.07  E-value=2.3  Score=25.26  Aligned_cols=28  Identities=21%  Similarity=0.163  Sum_probs=24.2

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015        198 LRSHFRNLCQDDTPMVRRAAAGKLGELA  225 (318)
Q Consensus       198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~  225 (318)
                      .++.+.++++.+++.+++.++.+|..++
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            5788888888889999999999998775

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=82.81  E-value=6.1  Score=37.96  Aligned_cols=79  Identities=23%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhc
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCS  284 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll  284 (318)
                      |...+.|-.++++||.++..+..+......-|.+...++.++..-|..++-.+..++.........   +.+.+.|..+|
T Consensus        98 d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L  177 (441)
T PF12054_consen   98 DVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL  177 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence            455788999999999999998665443334457899999999999999999999999877654333   47888899999


Q ss_pred             cc
Q psy14015        285 VQ  286 (318)
Q Consensus       285 ~D  286 (318)
                      .+
T Consensus       178 ~~  179 (441)
T PF12054_consen  178 EN  179 (441)
T ss_pred             cC
Confidence            87

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG2549|consensus

Probab=82.76  E-value=16  Score=35.56  Aligned_cols=163  Identities=18%  Similarity=0.181  Sum_probs=90.8

Q ss_pred             ChHHHHHHHHHHHcccccCcCcccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHh---hC--C----hhHHhhhHHH
Q psy14015         63 DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISA---QH--S----PHDLEAHFVP  132 (318)
Q Consensus        63 D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~---~~--~----~~~~~~~ilp  132 (318)
                      +++.-|.+|...|..=.       =.+.++|.|..++.+. .-.|-..-++-|.++..   .+  +    -+-+...++|
T Consensus       219 ~~~~~r~eAL~sL~TDs-------GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~P  291 (576)
T KOG2549|consen  219 SDEPLRQEALQSLETDS-------GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVP  291 (576)
T ss_pred             CCHHHHHHHHHhhccCc-------cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhh
Confidence            34447887777765321       1355777777765543 12211122222222222   11  1    1445566777


Q ss_pred             HHHH------hhc----CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015        133 LVQR------LAS----GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF  202 (318)
Q Consensus       133 ~~~~------l~~----d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l  202 (318)
                      .+..      |+.    |..|..|-.|+.++..++..++..+..                           ....+...+
T Consensus       292 SvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~---------------------------L~~Rit~tl  344 (576)
T KOG2549|consen  292 SVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN---------------------------LQPRITRTL  344 (576)
T ss_pred             HHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH---------------------------HHHHHHHHH
Confidence            6654      332    345888888888887776665543221                           235677788


Q ss_pred             HHhhcCC--CHHHHHHHHHhhHHHHHHhchhhhHhhHHHH----------------HHH-hhcCCcHHHHHHHHHHHHHH
Q psy14015        203 RNLCQDD--TPMVRRAAAGKLGELAKVVEVDYLKTDIIPM----------------FVN-LAQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       203 ~~l~~D~--~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~----------------l~~-ll~D~~~~VR~aa~~~l~~l  263 (318)
                      .+.+.|+  .+...+-++..|.+++...    +..-++|-                ..+ +-....+.++.+...++..+
T Consensus       345 ~k~l~D~~~~~st~YGai~gL~~lg~~~----I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~i  420 (576)
T KOG2549|consen  345 SKALLDNKKPLSTHYGAIAGLSELGHEV----IRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPI  420 (576)
T ss_pred             HHHhcCCCCCchhhhhHHHHHHHhhhhh----hhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHH
Confidence            8888886  4788999999998888621    11112221                111 22455667777777777764

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=82.67  E-value=9.2  Score=31.89  Aligned_cols=64  Identities=20%  Similarity=0.093  Sum_probs=52.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      +.+.....|++.-+|+++...+......   +...+.++.....+..|++..||.+...+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            6778888899977777777776665553   223577999999999999999999999999999976

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=82.22  E-value=26  Score=28.64  Aligned_cols=113  Identities=18%  Similarity=0.154  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh
Q psy14015        127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC  206 (318)
Q Consensus       127 ~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~  206 (318)
                      .+.+...+.+++++++...|..++.+++..+...+++.       |.   +                .....+..+.+.+
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~-------l~---~----------------~~~~W~~~Ll~~L   76 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEI-------LL---S----------------HGSQWLRALLSIL   76 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHH-------HH---H----------------HHHHHHHHHHHHH
Confidence            34467778889999999999999888887665543321       10   0                0123344455555


Q ss_pred             cC-CCHHHHHHHHHhhHHHHHHhch------hh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        207 QD-DTPMVRRAAAGKLGELAKVVEV------DY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       207 ~D-~~~~VR~~aa~~L~~l~~~~~~------~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      +. +...+++.++..+..+....+.      |.   ....+++.+.+++++  ..+...++.++..+....
T Consensus        77 ~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen   77 EKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            44 4467788888888888876542      11   123355555666665  445667777777776544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=82.18  E-value=1.9  Score=36.03  Aligned_cols=55  Identities=24%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhHHHHHHhchhh---hHhhHH------------HHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        212 MVRRAAAGKLGELAKVVEVDY---LKTDII------------PMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       212 ~VR~~aa~~L~~l~~~~~~~~---~~~~ll------------p~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      .||.+|..+|..+++..++..   .+..++            +.+.-++.||+..||.+++.++..+.+.
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g   70 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG   70 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence            489999999999999854321   122333            3456778999999999999999988753

>KOG1848|consensus

Probab=82.08  E-value=50  Score=36.01  Aligned_cols=222  Identities=12%  Similarity=0.113  Sum_probs=110.2

Q ss_pred             cCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH----HHHHHHHHHcccccC-cC--cccchhccch
Q psy14015         23 KNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE----VLLALAEQLGTFTPN-VG--GPEYVHCLLP   93 (318)
Q Consensus        23 ~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~----VR~~aa~~L~~l~~~-~~--~~~~~~~llp   93 (318)
                      .++-.++|+..++.+-.+....|.--  .+..++..+..+.+-..+    +-+..-..|.-+..- +.  +......++.
T Consensus       852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid  931 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID  931 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence            36667899999999999877766421  255566555544433322    212222222222111 10  1122233344


Q ss_pred             HHhhhcc-CchhHHHHHHHHHHHHHHhhCCh------hH-----------------------HhhhHHHHHHHhhcCCCc
Q psy14015         94 PLESLAT-VEETVVRDKAVESLRLISAQHSP------HD-----------------------LEAHFVPLVQRLASGDWF  143 (318)
Q Consensus        94 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~------~~-----------------------~~~~ilp~~~~l~~d~~~  143 (318)
                      .+..+.. .+|-+|--.|+..+-.+..++..      ++                       .--.++..+.++++|+..
T Consensus       932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen  932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred             HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence            4444432 33445555555555544443321      11                       111234455667788888


Q ss_pred             hhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh---cCC--CHHH----H
Q psy14015        144 TSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC---QDD--TPMV----R  214 (318)
Q Consensus       144 ~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~---~D~--~~~V----R  214 (318)
                      .||.+|+..|-.++..=+.               ..++.    .|.  ...+..++|.+-+.-   .++  ..++    -
T Consensus      1012 eVRngAvqtlfri~~Shg~---------------~l~~~----aW~--s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwt 1070 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGS---------------KLGTN----AWA--SCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWT 1070 (1610)
T ss_pred             HHhhhHHHHHHHHHhhhcc---------------cCChh----HHH--HHHHHHHHHHhccccccchhhhcchhHhhhhh
Confidence            8888888876544332221               11110    000  001122223322000   000  0111    1


Q ss_pred             HHHHHhhHHHHHHhch-----------hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        215 RAAAGKLGELAKVVEV-----------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       215 ~~aa~~L~~l~~~~~~-----------~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                      ..+.-.++.++..+..           -.+++.++.+++++..|.++.+-.++..++..+..
T Consensus      1071 et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence            2344444444444321           13578999999999999999999999998888763

>KOG2149|consensus

Probab=81.98  E-value=19  Score=33.68  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV  272 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~  272 (318)
                      ..+++....+..|++..||....+.+-.++...+++.   ...-++|++...+..-.+.+|.-+..-+.-+...+++.-+
T Consensus        98 ~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~  177 (393)
T KOG2149|consen   98 YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS  177 (393)
T ss_pred             HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence            3466777888899999999999998888887766554   2445888999999999999999999999999999888654


Q ss_pred             hH--hhHHHHHHhc
Q psy14015        273 EQ--LVMPTLRQCS  284 (318)
Q Consensus       273 ~~--~l~p~l~~ll  284 (318)
                      ..  .+++.+...+
T Consensus       178 ~~~~~il~n~~d~i  191 (393)
T KOG2149|consen  178 RYASKILENFKDVI  191 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            32  2455444443

>KOG2213|consensus

Probab=80.55  E-value=6.9  Score=36.47  Aligned_cols=47  Identities=26%  Similarity=0.269  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ  246 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~  246 (318)
                      .+.+.+-+.+|.|++-.||..|++.|+.+|.-    +....+.|.+.++++
T Consensus        60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            45578889999999999999999999999973    334556666666665

>KOG2005|consensus

Probab=80.29  E-value=69  Score=32.33  Aligned_cols=58  Identities=16%  Similarity=0.079  Sum_probs=40.8

Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      +..+-.|.+++.--++.+|++.--+++-++..=+    +-.++..+.++.+|          .+++|-.+.|
T Consensus       639 eM~lR~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd----------~D~eva~naI  696 (878)
T KOG2005|consen  639 EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHD----------GDLEVAMNAI  696 (878)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccC----------cchHHHHHHH
Confidence            4566678888888888888888777776663322    23567778888888          6777766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		1e-116
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-116
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		1e-115
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		1e-115
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-114
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-113
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-112
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		2e-16

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)
Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208
Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)
Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
                                         PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208
Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/276 (75%), Positives = 225/276 (81%), Gaps = 30/276 (10%)
Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188
           HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT        
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT-------- 177
Query: 189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248
                                 PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DE
Sbjct: 178 ----------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           QDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 251

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/276 (75%), Positives = 225/276 (81%), Gaps = 30/276 (10%)
Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188
           HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT        
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT-------- 177
Query: 189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248
                                 PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DE
Sbjct: 178 ----------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           QDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 251

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/274 (75%), Positives = 223/274 (81%), Gaps = 30/274 (10%)
Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLA
Sbjct: 2   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA 61
Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
           LAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHF
Sbjct: 62  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWEC 190
           VPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT          
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT---------- 171
Query: 191 GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250
                               PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQD
Sbjct: 172 --------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD 211
Query: 251 SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           SVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 212 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 245

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/273 (75%), Positives = 222/273 (81%), Gaps = 30/273 (10%)
Query: 12  LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLAL 71
           LYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLAL
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 72  AEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
           AEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHFV
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG 191
           PLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT           
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT----------- 169
Query: 192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251
                              PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDS
Sbjct: 170 -------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 210
Query: 252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           VRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 211 VRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 243

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/275 (74%), Positives = 221/275 (80%), Gaps = 30/275 (10%)
Query: 10  DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLL 69
           DSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 70  ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
           ALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAH
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWE 189
           FVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC D           
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD----------- 169
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ 249
                              DTP VRRAAA KLGE AKV+E+D +K++IIP F NLA DEQ
Sbjct: 170 -------------------DTPXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQ 210
Query: 250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
           DSVRLLAVEACV+IA LL Q D+E LV PTLRQ +
Sbjct: 211 DSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAA 245

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 115/256 (44%), Gaps = 42/256 (16%)
Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLL 69
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ER    L+P + E   D    V L
Sbjct: 5   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRL 64
Query: 70  ALAEQLGTFTPNVGGPEYVHCLLPPLESLATV----EETVVRDKAVESLRLISAQHSPHD 125
           A+ E    + P + G   V      L SL           +R+ A  +L+ +  +     
Sbjct: 65  AIIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 120
Query: 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQG 185
             A  +P V  ++    +  R +   LF +        V +E+                 
Sbjct: 121 AHATIIPKVLAMSGDPNYLHRMTT--LFCI-------NVLSEV----------------- 154
Query: 186 HVWECGSGV--KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243
               CG  +  K  L +  R +  D    VR   A  L ++  +++   L++++ P+   
Sbjct: 155 ----CGQDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 209
Query: 244 LAQDEQDSVRLLAVEA 259
           L QD+   V+  A EA
Sbjct: 210 LTQDQDVDVKYFAQEA 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-78
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-26
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-22
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-19
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-15
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-05
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  248 bits (634), Expect = 4e-78
 Identities = 173/288 (60%), Positives = 205/288 (71%), Gaps = 9/288 (3%)

Query: 4   SDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD 63
           + +  DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYD
Sbjct: 1   AAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD 60

Query: 64  EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
           EDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP
Sbjct: 61  EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120

Query: 124 HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQ 183
            DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPM 
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180

Query: 184 QGHVWECGSG---------VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK 234
           +                  VK+E+   F NL  D+   VR  A      +A+++  + L+
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE 240

Query: 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
             ++P     A+D+   VR +  +    +   +     +  ++P  + 
Sbjct: 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  108 bits (271), Expect = 1e-26
 Identities = 61/295 (20%), Positives = 109/295 (36%), Gaps = 15/295 (5%)

Query: 3   SSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY 62
           S + +P D       L+  L   D      S   L ++         + EL  +      
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCS 174

Query: 63  DED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
           D+   V  A A +LG F   +        ++P   +LA+ E+  VR  AVE+   I+   
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234

Query: 122 SPHDLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
              DLEA  +P +++ A    W      A     +         K +L   F+NL +D  
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294

Query: 181 PMQQGH----VWECGSGVKAELR---------SHFRNLCQDDTPMVRRAAAGKLGELAKV 227
              +      V E    + A+ R            + L  D    V+ A A  +  L+ +
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354

Query: 228 VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
           +  D     ++P+F+   +DE   VRL  +     +  ++    + Q ++P + +
Sbjct: 355 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 96.2 bits (239), Expect = 3e-22
 Identities = 41/261 (15%), Positives = 90/261 (34%), Gaps = 11/261 (4%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
           +  + + + + +  ++      +  ++  LG++ T   L+P     + DE  EV L +  
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            L      +G  +    LLP +  LA   +  VR   +E + L++ Q      +     L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRV-TAGVKAELRSHFRNLCQDDTPMQ-QGHVWECG 191
                    +  R +A         +       A +      +  D   +     ++   
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 192 --------SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243
                         +      +  D    VR   A  L ++  +++   L++++ P+   
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

Query: 244 LAQDEQDSVRLLAVEACVSIA 264
           L QD+   V+  A EA   ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 86.2 bits (213), Expect = 7e-19
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 15/297 (5%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           +A      D     +  L    +++  ++R     K + +  A+G E T+ +L+P     
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289

Query: 61  IYDED-EVLLALAEQLGTFTPNVG----GPEYVHCLLPPLESLATVEETVVRDKAVESLR 115
           + D + EV  A + ++  F  N+         +  +LP ++ L +     V+      + 
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM 349

Query: 116 LISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG-LFSVCYPRVTAGVKAELRSHFRN 174
            +S      +   H +PL       +    R +    L  V        +   L      
Sbjct: 350 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409

Query: 175 LCQDDTPMQQ-------GHVWECGSG--VKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 225
           L +D     +         +           +L S       D    +R AA   L +L 
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469

Query: 226 KVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
           +    ++    IIP  + ++ D     R+  +     ++ +  Q    + ++PT+ +
Sbjct: 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR 526

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 11/223 (4%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
           + + + +LK+E  ++RLN I  L  +   +G  +    L+P + E   D    V LA+ E
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            +      +G   +   L     +        +R+ A  +L+ +  +       A  +P 
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRNLCQDDTPMQQGHVWEC-- 190
           V  ++    +  R +     +V             +      +  D     + +V +   
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544

Query: 191 -------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK 226
                   S +++E++     L QD    V+  A   L  L+ 
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 32/229 (13%)

Query: 41  ALALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESLA 99
           +          E +    + + D+   +  A A  LG     +G    V     PL    
Sbjct: 4   SHHHHHHTDP-EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAV----EPLIKAL 54

Query: 100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159
             E+  VR  A ++L  I         E    PL++ L   D +  +++A  L  +   R
Sbjct: 55  KDEDAWVRRAAADALGQIGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER 107

Query: 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219
               +   L+        +D  ++    +  G               +D+   VR++AA 
Sbjct: 108 AVEPLIKALKD-------EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160

Query: 220 KLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 268
            LGE+            +      LA+      R +AV    +  SL+S
Sbjct: 161 ALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 38/264 (14%), Positives = 84/264 (31%), Gaps = 42/264 (15%)

Query: 22  LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTP 80
           ++ E+  +R  ++     +   L   +    ++  L E + D+   V+      +     
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 81  NVGGPEYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS 139
                +    +L  L S L   E   +  +  ++   + A+  P  +++    L      
Sbjct: 62  TR--EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQM-AKEKPELVKSMIPVLFANYRI 118

Query: 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR 199
           GD  T    +  L  +            + S  R+                         
Sbjct: 119 GDEKTKINVSYALEEIA-----KANPMLMASIVRDF------------------------ 149

Query: 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
               ++        +  A   +  + +     Y+    +P  +NL  D  + VR  AVEA
Sbjct: 150 ---MSMLSSKNREDKLTALNFIEAMGEN-SFKYVN-PFLPRIINLLHDGDEIVRASAVEA 204

Query: 260 CVSIASLLSQSDVEQLVMPTLRQC 283
            V +A+L     + ++V+  L + 
Sbjct: 205 LVHLATL--NDKLRKVVIKRLEEL 226

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE----VLLA 70
           I VL    +  D + ++N    L  IA           ++      +  ++       L 
Sbjct: 109 IPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLMASIVRDFMSMLSSKNREDKLTALN 166

Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
             E +G         +YV+  LP + +L    + +VR  AVE+L  ++  +    L    
Sbjct: 167 FIEAMGE-----NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVV 219

Query: 131 VPLVQRLASGDWFTSRTSACGL 152
           +  ++ L       ++T   G+
Sbjct: 220 IKRLEELNDTSSLVNKTVKEGI 241

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 31/218 (14%)

Query: 43  ALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESLATV 101
           A    R   E +    + + D+   +  A A  LG     +G    V     PL      
Sbjct: 10  AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAV----EPLIKALKD 61

Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161
           E+  VR  A ++L  I         E    PL++ L   D +  +++A  L  +   R  
Sbjct: 62  EDAWVRRAAADALGQIGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 114

Query: 162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKL 221
             +   L+        +D  ++    +  G               +D+   VR++AA  L
Sbjct: 115 EPLIKALKD-------EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167

Query: 222 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
           GE+            +      LA+      R +AV  
Sbjct: 168 GEIG--------GERVRAAMEKLAETGTGFARKVAVNY 197

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 46/211 (21%), Positives = 74/211 (35%), Gaps = 31/211 (14%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
           + + I  L+++   +R  +       A ALG+       +  L + + DED  V  A A+
Sbjct: 21  VEMYIKNLQDDSYYVRRAA-------AYALGKIGDE-RAVEPLIKALKDEDAWVRRAAAD 72

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            LG     +G    V     PL      E+  VR  A  +L  I         E    PL
Sbjct: 73  ALG----QIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPL 117

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSG 193
           ++ L   DWF    +A  L  +   R    +   L+        +D  ++Q      G  
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKD-------EDGWVRQSAADALGEI 170

Query: 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 224
               +R+    L +  T   R+ A   L   
Sbjct: 171 GGERVRAAMEKLAETGTGFARKVAVNYLETH 201

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 34/265 (12%), Positives = 76/265 (28%), Gaps = 31/265 (11%)

Query: 15  IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
              L   L + +   R++S + L       G +      I F +    D++       A 
Sbjct: 25  DDELFRLLDDHNSLKRISSARVLQLR----GGQDAVRLAIEFCS----DKNYIRRDIGAF 76

Query: 74  QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
            LG         + V  +L         +   VR  A+ES      ++  +  +      
Sbjct: 77  ILGQIKICKKCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCKKNPIYSPKI-VEQS 133

Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSG 193
                       R +A  +  +        +   L+         +  ++    +     
Sbjct: 134 QITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD-------PNGDVRNWAAFAININ 186

Query: 194 VK--AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251
               +++R  F  + QD    VR  A   L        +  L            + ++++
Sbjct: 187 KYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL----------CDELKKNT 236

Query: 252 VRLLAVEACVSIASLLSQSDVEQLV 276
           V    +EA   +        ++ ++
Sbjct: 237 VYDDIIEAAGELGDKTLLPVLDTML 261

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 30/221 (13%), Positives = 54/221 (24%), Gaps = 51/221 (23%)

Query: 41  ALALGQERTRGEL-IPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESL 98
           +   G      +L    L   + D + +  ++ A  L       GG + V          
Sbjct: 11  SKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQ----LRGGQDAV----RLAIEF 62

Query: 99  ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158
            + +  + RD     L  I       D   + +     L         T+          
Sbjct: 63  CSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL-NNMALNDKSACVRATAIEST------ 115

Query: 159 RVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAA 218
                                         +       ++    +    D +  VRRA A
Sbjct: 116 --------------------------AQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATA 149

Query: 219 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
             +  +     +  L        +NL +D    VR  A  A
Sbjct: 150 FAISVINDKATIPLL--------INLLKDPNGDVRNWAAFA 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 51/345 (14%), Positives = 102/345 (29%), Gaps = 103/345 (29%)

Query: 17  VL-IDELKNEDVQLRLNSIKKLSTIA-LALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
            + +D   +  VQ +++       I  L L    +   ++  L + +Y  D    + ++ 
Sbjct: 165 WVALDVCLSYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 75  LGTFTPNVG-----------GPEYVHCLLPPLESLATVEE------------TVV--RDK 109
                  +               Y +CLL     L  V+              ++  R K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 110 AVESLRLISAQHSPH-DLEAHFVPLVQR-----LASGDWFTSRTS-----ACGLFSVCYP 158
            V     +SA  + H  L+ H + L        L    +   R                P
Sbjct: 276 QV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLT----TNP 327

Query: 159 RVTAGVKAELR---SHFRNLCQDDTPMQQGHVWECGSGVK----AELRSHFRNLC--QDD 209
           R  + +   +R   + + N    +   +   + E  S +     AE R  F  L      
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 210 TPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVN-------LAQDEQDSVRLLAVEAC 260
             +              ++ +    +    + + VN       + +  ++S         
Sbjct: 385 AHIP-----------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------- 425

Query: 261 VSIASLLSQSDVEQLVMPTLRQCSVQIVDH-----KFCPNNEFHP 300
           +SI S+  +  V+      L +    IVDH      F  ++   P
Sbjct: 426 ISIPSIYLELKVKLENEYALHR---SIVDHYNIPKTFDSDDLIPP 467

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 36/308 (11%), Positives = 76/308 (24%), Gaps = 55/308 (17%)

Query: 8   PDDSLYPIA-VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGE--------LIPFLT 58
            +  +  I   L   + ++  QLR  S   L T+   L    +           +   LT
Sbjct: 80  KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 139

Query: 59  ETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE 112
             I  ++      E L  +A+ L      +    +   +L  L    T     VR + + 
Sbjct: 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLTSPRLAVRKRTII 197

Query: 113 SLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172
           +L  +               L+  L+  D  ++  +     +             +  + 
Sbjct: 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR----QAGHRIGEYL 253

Query: 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD- 231
             +                              C  D   +R           +    + 
Sbjct: 254 EKIIP-----------------------LVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290

Query: 232 --YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP--------TLR 281
             ++ T I      L  D   +      +     A      D                +R
Sbjct: 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 350

Query: 282 QCSVQIVD 289
           + + + +D
Sbjct: 351 RAAAKCLD 358

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 17/202 (8%)

Query: 91  LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA---SGDW-FTSR 146
           +          ++  +R +++E L  +     P      +  LV  L    + D      
Sbjct: 16  MPKDFYDKLEEKKWTLRKESLEVLEKL-LTDHPKLENGEYGALVSALKKVITKDSNVVLV 74

Query: 147 TSACGLFSVCYPRVTAGVKAELR---SHFRNLCQDDTPMQQGHVWEC-----GSGVKAEL 198
             A    ++    +                   ++  P     + E       S      
Sbjct: 75  AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ 134

Query: 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRL 254
           +        +  P V+   A  +       +       L   +    V    +   +VR 
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194

Query: 255 LAVEACVSIASLLSQSDVEQLV 276
            + EA  ++  L+    V  L+
Sbjct: 195 SSAEALGTLIKLMGDKAVTPLL 216

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 44/286 (15%), Positives = 88/286 (30%), Gaps = 46/286 (16%)

Query: 1   MASSDSAPDDSLYPIAV--LIDELKNEDVQLRLNSIKKLSTIALALGQERT-----RGEL 53
            A +D   +      +V  ++  + + +++ +L + +    + L+  ++       R  L
Sbjct: 43  KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL-LSREKQPPIDNIIRAGL 101

Query: 54  IPFLTETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR 107
           IP     +   D      E   AL   + + T            +P   SL       + 
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 108 DKAVESLRLISAQHSPHD----LEAHFV-PLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162
           ++AV +L  I A          ++   + PL+  LA  D  T                  
Sbjct: 161 EQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-------------- 205

Query: 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLG 222
                L     NLC++  P               ++      L   + P V   +   + 
Sbjct: 206 -YLRNLTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257

Query: 223 ELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
            L           +K  ++P  V L    +  +   A+ A  +I +
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.97
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.95
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.76
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.75
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.74
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.72
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.72
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.69
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.68
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.68
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.67
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.66
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.66
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.66
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.66
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.65
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.65
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.64
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.62
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.62
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.62
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.55
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.53
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.51
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.5
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.49
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.48
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.42
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.41
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.41
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.41
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.38
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.34
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.3
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.3
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.29
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.24
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.23
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.21
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.16
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.14
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.13
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.12
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.1
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.09
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.97
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.95
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.92
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.91
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.89
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.83
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.82
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.78
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.78
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.75
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.75
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.69
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.69
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.62
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.57
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.54
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.52
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.52
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.5
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.42
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.4
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.4
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.39
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.34
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.31
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.25
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.25
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.24
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.19
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.18
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.09
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.09
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.01
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.9
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.79
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.77
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.65
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.39
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.25
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.14
3grl_A	651	General vesicular transport factor P115; vesicle t	96.64
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.63
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	96.63
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	96.56
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.4
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.38
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	96.29
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.28
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	96.08
3grl_A	651	General vesicular transport factor P115; vesicle t	95.86
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.73
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	95.61
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	95.57
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	94.35
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	94.19
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.98
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.57
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	93.03
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	92.26
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	91.79
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.07
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.13
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	89.29
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	88.69
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	85.42
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	83.11
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	83.02

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.97  E-value=1.8e-30  Score=252.86  Aligned_cols=292  Identities=60%  Similarity=0.869  Sum_probs=262.3

Q ss_pred             CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCccc
Q psy14015          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPE   86 (318)
Q Consensus         7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~   86 (318)
                      ++|+++.||..+++.++++++.+|..+++.|..++..+|++..+++++|++....+++.+||..+++.|+.+.+.+|++.
T Consensus         4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~   83 (588)
T 1b3u_A            4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence            56899999999999999999999999999999999989998888999999998885555599999999999998888877


Q ss_pred             chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (318)
Q Consensus        87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~  166 (318)
                      ....++|.+..+..|++..||..|.+++..++..++++.....++|.+.++.+++++.+|..++.+++.++...+...+.
T Consensus        84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~  163 (588)
T 1b3u_A           84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            78889999999999999999999999999999999988888889999999999999999999999999999888877778


Q ss_pred             HHHHHHHhhccCCCcccccchh----hc----Cc-cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015        167 ELRSHFRNLCQDDTPMQQGHVW----EC----GS-GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI  237 (318)
Q Consensus       167 ~l~~~~~~l~~~~~~~vR~~v~----~~----~~-~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l  237 (318)
                      .+...+..++.|..+.||....    .+    ++ .....++|.+..+++|+++.||..++.+|+.++..++.+...+.+
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  243 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            8888888999999999997422    11    11 234678999999999999999999999999999999887777889


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      +|.+..+++|++|.||.+++.+++.++..+|++.....++|.+..+++|          ++++||..++++
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------~~~~vr~~a~~~  304 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD----------CEAEVRAAASHK  304 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC----------SSHHHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC----------CcHHHHHHHHHH
Confidence            9999999999999999999999999999999887778899999999999          888888876653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.95  E-value=3.1e-26  Score=222.89  Aligned_cols=281  Identities=18%  Similarity=0.214  Sum_probs=185.9

Q ss_pred             HHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHh
Q psy14015         18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLE   96 (318)
Q Consensus        18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~   96 (318)
                      +...++|+++.+|..+++.|+.++..+|++.....++|.+..+++|+++ ||..++..|+.++..++.....+.++|.+.
T Consensus       169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  248 (588)
T 1b3u_A          169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR  248 (588)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3345566777777777777777776666655556677777766666655 777777777766665554444555667776


Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-----hHHHHHHH
Q psy14015         97 SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-----VKAELRSH  171 (318)
Q Consensus        97 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-----~~~~l~~~  171 (318)
                      .++.|+++.||..|++++..++...+++.....++|.+.++++|+++.+|..|+..++.+...++..     ....+...
T Consensus       249 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~  328 (588)
T 1b3u_A          249 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC  328 (588)
T ss_dssp             HHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHH
Confidence            7667767777777777777776666555555556677767777766777777777666666555432     12333444


Q ss_pred             HHhhccCCCcccccchh-hc-------Cc-cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHH
Q psy14015        172 FRNLCQDDTPMQQGHVW-EC-------GS-GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFV  242 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~v~-~~-------~~-~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~  242 (318)
                      +..+.++..+.||.... .+       ++ ....+++|.+..+++|+++.||..++.+++.++..+|.+...+.++|.+.
T Consensus       329 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~  408 (588)
T 1b3u_A          329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV  408 (588)
T ss_dssp             HHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            55556666666665311 11       11 12345677777777777777888777777777777776655567778777


Q ss_pred             HhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        243 NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       243 ~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      .+++|++|.||.+++.+++.++..+|++.....++|.+..+++|          ++++||..++.+
T Consensus       409 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------~~~~Vr~~a~~~  464 (588)
T 1b3u_A          409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD----------HVYAIREAATSN  464 (588)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC----------SSHHHHHHHHHH
T ss_pred             HHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHH
Confidence            77888888888888888888887777766666777888888888          666666655543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=3.6e-18  Score=174.07  Aligned_cols=280  Identities=15%  Similarity=0.092  Sum_probs=216.9

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc-------cch
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP-------EYV   88 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~-------~~~   88 (318)
                      .++..+.++++.+|..++..++.++...++. .+.+++|.+.+.+++.++ +|..+...|+.+++..+..       ...
T Consensus        94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~  172 (852)
T 4fdd_A           94 ECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL  172 (852)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence            4556678899999999999999999876554 688999999999988777 9999999999887654432       124


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc---
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG---  163 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~---  163 (318)
                      ..++|.+.+++.|++..||..|+.++..+....+...  ....++|.+.++.+|+++.+|..|+..|+.+....+..   
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~  252 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP  252 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5688888889999999999999999988876554321  22357888888889999999999999998876654332   


Q ss_pred             hHHHHHHHHHhhccCCCcccccchh----hcCc---------cchHHHHHHHHHhh-----------cC-----------
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVW----ECGS---------GVKAELRSHFRNLC-----------QD-----------  208 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~----~~~~---------~~~~~ll~~l~~l~-----------~D-----------  208 (318)
                      .-..+...+..+.++..+.||....    .+.+         .....++|.+.+.+           +|           
T Consensus       253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~  332 (852)
T 4fdd_A          253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI  332 (852)
T ss_dssp             GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence            2234445555666777777776321    1211         23347788888776           45           


Q ss_pred             CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D  286 (318)
                      .+|.||++++.+++.++..+|. .+...++|.+..+++|++|.+|.+++.+++.+++..++.  .....++|.+..+++|
T Consensus       333 ~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d  411 (852)
T 4fdd_A          333 SDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD  411 (852)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999984 466789999999999999999999999999999877653  2346699999999999


Q ss_pred             cccccccCCCCCCchhhHHhhh
Q psy14015        287 IVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       287 ~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                                +.+.||..+...
T Consensus       412 ----------~~~~Vr~~a~~~  423 (852)
T 4fdd_A          412 ----------KKALVRSITCWT  423 (852)
T ss_dssp             ----------SSHHHHHHHHHH
T ss_pred             ----------CCHHHHHHHHHH
Confidence                      888888866644

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.76  E-value=6.6e-17  Score=164.75  Aligned_cols=291  Identities=13%  Similarity=0.070  Sum_probs=214.5

Q ss_pred             CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH-------hhchhhhhhhhcCChHH-HHHHHHHHHccccc
Q psy14015          9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT-------RGELIPFLTETIYDEDE-VLLALAEQLGTFTP   80 (318)
Q Consensus         9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~-------~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~   80 (318)
                      +.--.-++.+...++++++.+|..++..|..++...++...       .+.++|.+.+++.|+++ ||.++++.|..+..
T Consensus       124 ~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~  203 (852)
T 4fdd_A          124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII  203 (852)
T ss_dssp             TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            33334577888999999999999999999999987765421       35688888888888777 99999999998875


Q ss_pred             CcCcc--cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhh
Q psy14015         81 NVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVC  156 (318)
Q Consensus        81 ~~~~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~  156 (318)
                      ..+..  .....+++.+..++.|+++.||..|..++..+++..+..  .....+++.+.+..+|++..+|..|++.+..+
T Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL  283 (852)
T ss_dssp             TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            43221  123457777888889999999999999999999876542  22345788888888999899999999888776


Q ss_pred             ccccC-----cchHHHHHHHH-Hhhc----------cC-----------CCcccccc----hh----hcCccchHHHHHH
Q psy14015        157 YPRVT-----AGVKAELRSHF-RNLC----------QD-----------DTPMQQGH----VW----ECGSGVKAELRSH  201 (318)
Q Consensus       157 ~~~~~-----~~~~~~l~~~~-~~l~----------~~-----------~~~~vR~~----v~----~~~~~~~~~ll~~  201 (318)
                      +....     ...-..+...+ ..++          .+           ....+|..    +.    ..++.....++|.
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~  363 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL  363 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            54311     11111222222 1221          22           22334531    11    1233455678899


Q ss_pred             HHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhh
Q psy14015        202 FRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLV  276 (318)
Q Consensus       202 l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l  276 (318)
                      +.++++|++|.+|.+++.+||.++...+..  .....++|.+..+++|+++.||.+++.+++.++..+++.   .....+
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l  443 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL  443 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            999999999999999999999999766532  245779999999999999999999999999999887653   344568


Q ss_pred             HHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        277 MPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       277 ~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +|.+...+.|          .++.||.++..+.
T Consensus       444 l~~L~~~L~d----------~~~~vr~~a~~aL  466 (852)
T 4fdd_A          444 MTELLKRILD----------SNKRVQEAACSAF  466 (852)
T ss_dssp             HHHHHHHHTC----------SSHHHHHHHHHHH
T ss_pred             HHHHHHHHhC----------CCHHHHHHHHHHH
Confidence            9999999999          7888888876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=5e-17  Score=144.17  Aligned_cols=235  Identities=17%  Similarity=0.119  Sum_probs=168.3

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      .++.+++.|+++++.+|..++..|+.++   +     ...+|.+.++++|+++ ||..++..|+.+..   .......++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~---~-----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG---G-----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC---C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC---C-----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence            4778999999999999999999999874   2     2367888888888777 99999999998753   222334466


Q ss_pred             hHHh-hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015         93 PPLE-SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (318)
Q Consensus        93 p~l~-~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~  171 (318)
                      +.+. .++.|+++.||..|+.+|..++...+.  ....++|.+.++++|+++.+|..|+..++.+...   .    ....
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~---~----~~~~  163 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK---A----TIPL  163 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------C----CHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---H----HHHH
Confidence            7776 457899999999999999999854321  1234788888899999999999999999865321   1    1223


Q ss_pred             HHhhccCCCcccccc-hhhcCcc--chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015        172 FRNLCQDDTPMQQGH-VWECGSG--VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE  248 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~-v~~~~~~--~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~  248 (318)
                      +..+..+..+.||.. +..++..  .....++.+..+++|+++.||..++.+|+.++.        ...+|.+..+++|+
T Consensus       164 L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~~~l~d~  235 (280)
T 1oyz_A          164 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCDELKKN  235 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHHHHHTSS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHHHHhcCc
Confidence            344555666666653 2222211  245677888888888888888888888887752        34667777777776


Q ss_pred             cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       249 ~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      +  ||..++.+++.+..        ...+|.+..+++|
T Consensus       236 ~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~  263 (280)
T 1oyz_A          236 T--VYDDIIEAAGELGD--------KTLLPVLDTMLYK  263 (280)
T ss_dssp             S--CCHHHHHHHHHHCC--------GGGHHHHHHHHTT
T ss_pred             c--HHHHHHHHHHhcCc--------hhhhHHHHHHHhc
Confidence            5  78888877777642        2467888888765

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.75  E-value=1.1e-16  Score=150.77  Aligned_cols=277  Identities=16%  Similarity=0.095  Sum_probs=201.0

Q ss_pred             hHHHHHHHhcCc--cHHHHHHHHHhHHHHHHhhChH---hHhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCcc
Q psy14015         14 PIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus        14 ~i~~l~~~l~~~--~~~~R~~~~~~L~~ia~~lg~~---~~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~~   85 (318)
                      -++.++..++++  ++.+|..++..|..++....++   .....++|.+..++.|+  ++ ||..+++.+..+...++..
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~  208 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            467888899888  9999999999999998765322   23456888888888886  56 9999999999877654421


Q ss_pred             ----cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         86 ----EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        86 ----~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                          .....+++.+..++.+++..||..+.+++..++...+..  .... .+++.+....+|.+..+|..|++.+..+..
T Consensus       209 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence                123456888888888999999999999999999877542  2334 688888888888888999999887765543


Q ss_pred             ccCcchHHHHHHHHHhh-ccCCCcccccchhhcCccchHHHHHHHHHhhc-------CCCHHHHHHHHHhhHHHHHHhch
Q psy14015        159 RVTAGVKAELRSHFRNL-CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVVEV  230 (318)
Q Consensus       159 ~~~~~~~~~l~~~~~~l-~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-------D~~~~VR~~aa~~L~~l~~~~~~  230 (318)
                      ...     .. ..+..- ..+..+..+. .....+.....++|.+.+.+.       |++|.+|.+++.+|+.++..+| 
T Consensus       289 ~~~-----~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-  360 (462)
T 1ibr_B          289 EEM-----DL-AIEASEAAEQGRPPEHT-SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-  360 (462)
T ss_dssp             HHH-----HH-HHHHCCTTCSSSCSSCC-CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-
T ss_pred             HHH-----HH-HHhcccccccCCCccch-hHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-
Confidence            210     00 001100 0000000000 000000012567888877664       3468999999999999999999 


Q ss_pred             hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        231 DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       231 ~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      +.+...++|.+...++|++|.+|.+++.+++.++...+++   .....++|.+.++++|          +.+.||..++.
T Consensus       361 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d----------~~~~Vr~~a~~  430 (462)
T 1ibr_B          361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD----------PSVVVRDTAAW  430 (462)
T ss_dssp             TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC----------SCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHH
Confidence            5667889999999999999999999999999999866533   2335699999999999          88999987765


Q ss_pred             h
Q psy14015        308 A  308 (318)
Q Consensus       308 ~  308 (318)
                      .
T Consensus       431 ~  431 (462)
T 1ibr_B          431 T  431 (462)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.74  E-value=1.2e-16  Score=162.13  Aligned_cols=281  Identities=13%  Similarity=0.029  Sum_probs=214.8

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCcc-----cch
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGGP-----EYV   88 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~~-----~~~   88 (318)
                      ..+++.+.+++..+|..++..++.++...++...+.+++|.+.+.+.++ ++ +|..+...|+.+++.++..     ...
T Consensus        98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  177 (861)
T 2bpt_A           98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence            4567888899999999999999999988766546789999999999886 66 9999999999888765532     345


Q ss_pred             hccchHHhhhccCc--hhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         89 HCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        89 ~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      ..+++.+...+.|+  +..||..|++++..+...+...    .....+++.+.+++++++|.+|..++..++.+....+.
T Consensus       178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~  257 (861)
T 2bpt_A          178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            66888888888887  7899999999999987665432    11245888888888999999999999999888765544


Q ss_pred             chHH----HHHHHHHhhccCCCcccccchhh----cCc------------------------cchHHHHHHHHHhhcC--
Q psy14015        163 GVKA----ELRSHFRNLCQDDTPMQQGHVWE----CGS------------------------GVKAELRSHFRNLCQD--  208 (318)
Q Consensus       163 ~~~~----~l~~~~~~l~~~~~~~vR~~v~~----~~~------------------------~~~~~ll~~l~~l~~D--  208 (318)
                      ....    .+...+.....+..+.||.....    +.+                        .....++|.++..+.+  
T Consensus       258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3332    33333444455666666653110    000                        0125677888777763  


Q ss_pred             -----CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh---hHhhHHHH
Q psy14015        209 -----DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTL  280 (318)
Q Consensus       209 -----~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l  280 (318)
                           ++|.+|++++..|+.++..+|. .+...++|.+...++|++|.+|.+++.+++.+++..+++..   ...++|.+
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l  416 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                 4689999999999999999984 45678999999999999999999999999999987764433   34589999


Q ss_pred             HHhccccccccccCCCCCCchhhHHhh
Q psy14015        281 RQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       281 ~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      ...++|          +.+.||..+..
T Consensus       417 ~~~l~d----------~~~~vr~~a~~  433 (861)
T 2bpt_A          417 LNLMND----------QSLQVKETTAW  433 (861)
T ss_dssp             HHGGGC----------SCHHHHHHHHH
T ss_pred             HHHcCC----------CcHHHHHHHHH
Confidence            999999          78888876653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.72  E-value=1.1e-16  Score=135.95  Aligned_cols=189  Identities=21%  Similarity=0.216  Sum_probs=153.3

Q ss_pred             CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhc
Q psy14015         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHC   90 (318)
Q Consensus        12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~   90 (318)
                      -..++.+++.|+++++.+|..++..|+.+    |.    ...+|.+.+++.|+++ ||..++..|+.+..        ..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKI----GD----ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            34578899999999999999999999986    32    2467888888888777 99999999998742        23


Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS  170 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~  170 (318)
                      .+|.+..++.|+++.||..|+.+|..+...        ..+|.+.++++|+++.+|..|+..|+.+..            
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------  141 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDEDWFVRIAAAFALGEIGD------------  141 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------
Confidence            567888888999999999999999988642        367788888999999999999998875521            


Q ss_pred             HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015        171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~  250 (318)
                                               ...++.+..+++|+++.||..++.+|+.+..        ...+|.+..+++|+++
T Consensus       142 -------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~  188 (211)
T 3ltm_A          142 -------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTG  188 (211)
T ss_dssp             -------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCH
T ss_pred             -------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCH
Confidence                                     2347889999999999999999999999853        4688899999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCh
Q psy14015        251 SVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       251 ~VR~aa~~~l~~l~~~l~~  269 (318)
                      .||..+..+|..+...-+.
T Consensus       189 ~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          189 FARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhcCCCCCC
Confidence            9999999999888765443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.72  E-value=2e-16  Score=133.38  Aligned_cols=184  Identities=21%  Similarity=0.215  Sum_probs=152.5

Q ss_pred             chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      ...+.+++.|+++++.+|..++..|+.+.    .    ...+|.+.+++.|+++ ||..++..|+.+..        ...
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~   77 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG----D----ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA   77 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHC----C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGG
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcC----C----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence            34788999999999999999999999863    2    2356777788888777 99999999998742        235


Q ss_pred             chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (318)
Q Consensus        92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~  171 (318)
                      +|.+..++.|+++.||..|+.+|..+...        ..+|.+.++++|+++.+|..|+..++.+..             
T Consensus        78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------  136 (201)
T 3ltj_A           78 VEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------------  136 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCcH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------------
Confidence            67888888999999999999999988642        367778888899999999999998875421             


Q ss_pred             HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015        172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS  251 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~  251 (318)
                                              ...++.+..+++|+++.||..++.+|+.++.        ...+|.+..+++|+++.
T Consensus       137 ------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~  184 (201)
T 3ltj_A          137 ------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGF  184 (201)
T ss_dssp             ------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHH
T ss_pred             ------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHH
Confidence                                    2357889999999999999999999999842        45888999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14015        252 VRLLAVEACVSIAS  265 (318)
Q Consensus       252 VR~aa~~~l~~l~~  265 (318)
                      ||.++..++..+..
T Consensus       185 vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          185 ARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.69  E-value=6.2e-16  Score=163.34  Aligned_cols=283  Identities=12%  Similarity=0.114  Sum_probs=213.0

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--------
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--------   85 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--------   85 (318)
                      +..+++.+.++++.+|..++..|+.++..+++. ....+++.+...+.|+++ ||.+++..|+.++..++..        
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~  128 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  128 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence            567888999999999999999999999888774 677889999888877666 9999999999998877654        


Q ss_pred             cchhccchHHhhhccC-chhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATV-EETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      ..++.++|.+...+.| ++..+|..|+.++..+++..+..  .+...+++.+...+.+++..+|..|+..++.+....++
T Consensus       129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence            2577899999888884 78999999999999999765441  23455788888888898899999999999988776654


Q ss_pred             chHHHHH-HHHHhhccCCCcccccchh--------hcCc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch
Q psy14015        163 GVKAELR-SHFRNLCQDDTPMQQGHVW--------ECGS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV  230 (318)
Q Consensus       163 ~~~~~l~-~~~~~l~~~~~~~vR~~v~--------~~~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~  230 (318)
                      ..-..+. ..+..+....++.+|....        ..++   ..-..++|.+.+.++|+++.||..++.+++.++..+|.
T Consensus       209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            3222211 2223333333345665311        1122   23367999999999999999999999999999998876


Q ss_pred             hh--hHhhHHHHHHHhhc-------------------------------------CCcHHHHHHHHHHHHHHHhhCCh--
Q psy14015        231 DY--LKTDIIPMFVNLAQ-------------------------------------DEQDSVRLLAVEACVSIASLLSQ--  269 (318)
Q Consensus       231 ~~--~~~~llp~l~~ll~-------------------------------------D~~~~VR~aa~~~l~~l~~~l~~--  269 (318)
                      +.  ....++|.+.+.++                                     |..|.||.+++.++..++...+.  
T Consensus       289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~  368 (1230)
T 1u6g_C          289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  368 (1230)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence            42  45667776655442                                     23588999999999999987765  


Q ss_pred             hhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        270 SDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       270 ~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ......++|.+...+.|          ..++||..+++.
T Consensus       369 ~~~~~~l~~~l~~~l~d----------~~~~Vr~~a~~~  397 (1230)
T 1u6g_C          369 PEFYKTVSPALISRFKE----------REENVKADVFHA  397 (1230)
T ss_dssp             HHHHTTTHHHHHSTTSC----------SSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC----------CchHHHHHHHHH
Confidence            34556789999999999          889999777754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.68  E-value=3.7e-16  Score=158.79  Aligned_cols=278  Identities=15%  Similarity=0.024  Sum_probs=205.8

Q ss_pred             HHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCc---ccchhcc
Q psy14015         18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGG---PEYVHCL   91 (318)
Q Consensus        18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~---~~~~~~l   91 (318)
                      +++.+.++++.+ ..++..++.++...++...+.+++|.+.+.++++  ++ +|..+.+.|+.+++.+++   ......+
T Consensus        95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l  173 (876)
T 1qgr_A           95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI  173 (876)
T ss_dssp             HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred             HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence            677788888888 8999999999887666556889999999988776  66 999999999998875532   2344557


Q ss_pred             chHHhhhccCc--hhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015         92 LPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK  165 (318)
Q Consensus        92 lp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~  165 (318)
                      ++.+...+.++  +..||..|++++..++..++..    .....+++.+.++.+++++.+|..+++.++.++........
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~  253 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            78788877776  6899999999999988765432    12235788888888888899999999998877654443322


Q ss_pred             H----HHHHHHHhhccCCCcccccchh-------hc-------------------Cc---c---chHHHHHHHHHhhc--
Q psy14015        166 A----ELRSHFRNLCQDDTPMQQGHVW-------EC-------------------GS---G---VKAELRSHFRNLCQ--  207 (318)
Q Consensus       166 ~----~l~~~~~~l~~~~~~~vR~~v~-------~~-------------------~~---~---~~~~ll~~l~~l~~--  207 (318)
                      .    .+...+.....+..+.||....       ..                   ..   .   ..+.++|.+.+.+.  
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~  333 (876)
T 1qgr_A          254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence            2    2222222233444445554210       00                   00   0   12567787777764  


Q ss_pred             -----CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHH
Q psy14015        208 -----DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPT  279 (318)
Q Consensus       208 -----D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~  279 (318)
                           |++|.+|++++.+++.++..+|. .+...++|.+...++|++|.+|.+++.+++.++..++++.   ....++|.
T Consensus       334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~  412 (876)
T 1qgr_A          334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT  412 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                 46799999999999999999984 4567899999999999999999999999999998887442   34568999


Q ss_pred             HHHhccccccccccCCCCCCchhhHHhh
Q psy14015        280 LRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      +..+++|          +.+.||..++.
T Consensus       413 l~~~l~d----------~~~~vr~~a~~  430 (876)
T 1qgr_A          413 LIELMKD----------PSVVVRDTAAW  430 (876)
T ss_dssp             HHHHHTC----------SSHHHHHHHHH
T ss_pred             HHHHhCC----------CCHHHHHHHHH
Confidence            9999999          77888866654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.68  E-value=6.9e-16  Score=131.05  Aligned_cols=179  Identities=20%  Similarity=0.144  Sum_probs=149.2

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH  129 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  129 (318)
                      .+.+|.+.++++|+++ +|..++..|+.+..        ...+|.+..++.|+++.||..|+.+|..+...        .
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--------~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--------R   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------G
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------H
Confidence            3467788888888777 99999999998743        24677888888999999999999999988642        3


Q ss_pred             HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD  209 (318)
Q Consensus       130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~  209 (318)
                      .+|.+.++++|+++.+|..|+..++.+..                                     ...++.+.++++|+
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------------------------------~~~~~~L~~~l~d~  124 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------------------------ERAVEPLIKALKDE  124 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------------------------GGGHHHHHHHTTCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHhCC
Confidence            67778888999999999999998875421                                     23468888999999


Q ss_pred             CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccc
Q psy14015        210 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVD  289 (318)
Q Consensus       210 ~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~  289 (318)
                      ++.||..++.+|+.++.        ...+|.+..+++|+++.||..++.+++.+..        ...+|.+..+++|   
T Consensus       125 ~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d---  185 (211)
T 3ltm_A          125 DWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAET---  185 (211)
T ss_dssp             SHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhC---
Confidence            99999999999998843        3578889999999999999999999998852        4578899999999   


Q ss_pred             ccccCCCCCCchhhHHhhh
Q psy14015        290 HKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       290 ~~~~~~~~~~~Vr~~~i~~  308 (318)
                             +++.||..+++.
T Consensus       186 -------~~~~vr~~A~~a  197 (211)
T 3ltm_A          186 -------GTGFARKVAVNY  197 (211)
T ss_dssp             -------CCHHHHHHHHHH
T ss_pred             -------CCHHHHHHHHHH
Confidence                   999999998854

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.67  E-value=6.4e-15  Score=138.49  Aligned_cols=259  Identities=13%  Similarity=0.058  Sum_probs=196.0

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC---hHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCc---c
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG---QERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGG---P   85 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg---~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~---~   85 (318)
                      -++.+...++++++.+|..++..|..++....   .......++|.+.+++.+ .++ +|..++..|+.++..-+.   .
T Consensus       108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  187 (450)
T 2jdq_A          108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF  187 (450)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence            47788899999999999999999999975321   111234678889888875 455 999999999999853311   2


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .....++|.+..++.++++.+|..+..++..++...++   ......++|.+.+++.++++.+|..|+..++.+......
T Consensus       188 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  267 (450)
T 2jdq_A          188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI  267 (450)
T ss_dssp             GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence            23366889999999999999999999999999875432   112234788888999999999999999999877543221


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIP  239 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp  239 (318)
                       ....+                         ....++|.+.++++++++.+|+.++.+|+.++.....   ......++|
T Consensus       268 -~~~~~-------------------------~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~  321 (450)
T 2jdq_A          268 -QTQVI-------------------------LNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP  321 (450)
T ss_dssp             -HHHHH-------------------------HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             -HHHHH-------------------------HHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence             11111                         1234789999999999999999999999999852111   112246899


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      .+..+++|+++.||..++.++++++...+++...    ..++|.|..++++          +++.||..++..
T Consensus       322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~----------~~~~v~~~a~~a  384 (450)
T 2jdq_A          322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV----------MDSKIVQVALNG  384 (450)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS----------SCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC----------CCHHHHHHHHHH
Confidence            9999999999999999999999999765554322    3599999999999          778888777644

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.67  E-value=6.9e-15  Score=149.16  Aligned_cols=257  Identities=16%  Similarity=0.119  Sum_probs=192.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--Hhh-chhhhhhhhcCChHH-HHHHHHHHHcccccCcCc------
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRG-ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG------   84 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~-~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~------   84 (318)
                      +..+.+.++++++.+|..+++.|..++...+...  ... .+++++...+.|.++ ||..+.+.+..+++....      
T Consensus       226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~  305 (861)
T 2bpt_A          226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA  305 (861)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3445567788999999999999999987654321  123 677777777888666 999999998887653210      


Q ss_pred             -------------ccchhccchHHhhhccC-------chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCch
Q psy14015         85 -------------PEYVHCLLPPLESLATV-------EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFT  144 (318)
Q Consensus        85 -------------~~~~~~llp~l~~l~~d-------~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~  144 (318)
                                   ......++|.+...+.+       +++.+|..|..++..++..++. .+...++|.+.+.+++++|.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~  384 (861)
T 2bpt_A          306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWR  384 (861)
T ss_dssp             HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHH
T ss_pred             hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChh
Confidence                         11224577777655543       3468999999999999988773 44556889999999999999


Q ss_pred             hhhhhhhhhhhhccccC-cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHH
Q psy14015        145 SRTSACGLFSVCYPRVT-AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE  223 (318)
Q Consensus       145 vR~~a~~~l~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~  223 (318)
                      +|..|+..++.+..... .....                           ....++|.+...++|+++.||..++.+++.
T Consensus       385 ~r~~a~~~l~~i~~~~~~~~~~~---------------------------~l~~il~~l~~~l~d~~~~vr~~a~~~l~~  437 (861)
T 2bpt_A          385 NREAAVMAFGSIMDGPDKVQRTY---------------------------YVHQALPSILNLMNDQSLQVKETTAWCIGR  437 (861)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHH---------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHH---------------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            99999999998875543 11111                           125678999999999999999999999999


Q ss_pred             HHHHhch----hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh---h---hhhHhhHHHHHHhcccccccccc
Q psy14015        224 LAKVVEV----DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---S---DVEQLVMPTLRQCSVQIVDHKFC  293 (318)
Q Consensus       224 l~~~~~~----~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~---~---~~~~~l~p~l~~ll~D~~~~~~~  293 (318)
                      ++..++.    ......++|.+...++|+ +.||.+++.++..+++.+++   +   .....++|.+.+++++.+     
T Consensus       438 l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d-----  511 (861)
T 2bpt_A          438 IADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID-----  511 (861)
T ss_dssp             HHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC-----
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC-----
Confidence            9998865    345678999999999997 99999999999999998762   2   234567888899998400     


Q ss_pred             CCCCCCchhhHHhhh
Q psy14015        294 PNNEFHPLELHVISA  308 (318)
Q Consensus       294 ~~~~~~~Vr~~~i~~  308 (318)
                         .+++||..+++.
T Consensus       512 ---~~~~vr~~a~~a  523 (861)
T 2bpt_A          512 ---NEFNARASAFSA  523 (861)
T ss_dssp             ---CGGGHHHHHHHH
T ss_pred             ---cchHHHHHHHHH
Confidence               346788766543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.66  E-value=6.3e-15  Score=149.74  Aligned_cols=283  Identities=16%  Similarity=0.117  Sum_probs=206.1

Q ss_pred             hHHHHHHHhcCc--cHHHHHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCcc
Q psy14015         14 PIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQER---TRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus        14 ~i~~l~~~l~~~--~~~~R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~~   85 (318)
                      -++.++..++++  ++.+|..+++.|..++..++++.   ....++|.+.+.+.++  ++ ||..+.+.|..++..++..
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~  208 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888888  89999999999999988766432   3456788888877775  45 9999999999887765432


Q ss_pred             c----chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         86 E----YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        86 ~----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                      .    ....+++.+..++.|+++.||..+.+++..++...+..  .... .+++.+.+..++++..+|..|++.+..+..
T Consensus       209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~  288 (876)
T 1qgr_A          209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            1    11347888888888889999999999999999876542  2233 678888888888888999998877766543


Q ss_pred             cc--------------------Ccc-hH---HHHHH-HHHhhcc------CCCcccccch----h----hcCccchHHHH
Q psy14015        159 RV--------------------TAG-VK---AELRS-HFRNLCQ------DDTPMQQGHV----W----ECGSGVKAELR  199 (318)
Q Consensus       159 ~~--------------------~~~-~~---~~l~~-~~~~l~~------~~~~~vR~~v----~----~~~~~~~~~ll  199 (318)
                      ..                    ... .+   ..+.. .+..++.      +..+.+|...    .    ..++.....++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l  368 (876)
T 1qgr_A          289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHH
Confidence            21                    001 11   12222 2222332      2234455421    0    12234456788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh----hh
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS----DV  272 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~----~~  272 (318)
                      |.+...++|++|.+|.+++.+++.++..++++   .....++|.+...++|+++.||.+++.+++.++..+++.    ..
T Consensus       369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            88888999999999999999999999766633   234678999999999999999999999999999988753    44


Q ss_pred             hHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        273 EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       273 ~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      ...++|.++..++|          . +.||.++..
T Consensus       449 l~~~l~~l~~~l~~----------~-~~v~~~a~~  472 (876)
T 1qgr_A          449 LAPLLQCLIEGLSA----------E-PRVASNVCW  472 (876)
T ss_dssp             HHHHHHHHHHHTTS----------C-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC----------C-HHHHHHHHH
Confidence            56799999999998          4 677766554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.66  E-value=1.7e-15  Score=131.75  Aligned_cols=192  Identities=12%  Similarity=0.079  Sum_probs=145.4

Q ss_pred             HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhhCChh
Q psy14015         49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQHSPH  124 (318)
Q Consensus        49 ~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~  124 (318)
                      ....+-|.+.+.++|.+| +|++++..|..++...+.  ......+++.+..++ +|.+..||..|+.++..++..+++.
T Consensus        12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~   91 (242)
T 2qk2_A           12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR   91 (242)
T ss_dssp             CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            344555556667777788 888888888877653111  112245677777777 4888899999999999999877653


Q ss_pred             --HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015        125 --DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF  202 (318)
Q Consensus       125 --~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l  202 (318)
                        .+...++|.+.+.++|+...+|..|+..+..++...+                                 -+.++|.+
T Consensus        92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------------------------------~~~ll~~l  138 (242)
T 2qk2_A           92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---------------------------------LEAQQESI  138 (242)
T ss_dssp             GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------------------------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------------------------------HHHHHHHH
Confidence              3445688888888899888899888887765543221                                 15678888


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015        203 RNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  273 (318)
Q Consensus       203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~  273 (318)
                      ...++|.+|.||..++..++.+....+++    .....++|.+..+++|+++.||.++..+++.++..+|.+...
T Consensus       139 ~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~  213 (242)
T 2qk2_A          139 VESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVT  213 (242)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHH
Confidence            99999999999999999999987666543    234679999999999999999999999999999999876543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.66  E-value=1.6e-15  Score=127.78  Aligned_cols=180  Identities=20%  Similarity=0.141  Sum_probs=148.8

Q ss_pred             hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhh
Q psy14015         50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA  128 (318)
Q Consensus        50 ~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~  128 (318)
                      .....|.+.++++|+++ ||..++..|+.+..        ...++.+..++.|+++.||..|+.++..+...        
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~--------   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--------   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------
Confidence            34567788888998887 99999999998742        23567777888899999999999999888632        


Q ss_pred             hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015        129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD  208 (318)
Q Consensus       129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D  208 (318)
                      ..+|.+.++++|+++.+|..|+..++.+..                                     ...++.+..+++|
T Consensus        76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------------------~~~~~~L~~~l~d  118 (201)
T 3ltj_A           76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------------------------ERAVEPLIKALKD  118 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------------------------GGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHcC
Confidence            367778888999999999999998875421                                     2346888889999


Q ss_pred             CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccc
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~  288 (318)
                      +++.||..++.+|+.+..        ...+|.+..+++|+++.||..++.+++.+.        ....+|.+..+++|  
T Consensus       119 ~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--------~~~~~~~L~~~l~d--  180 (201)
T 3ltj_A          119 EDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG--------GERVRAAMEKLAET--  180 (201)
T ss_dssp             SSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------SHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHhC--
Confidence            999999999999998853        457888999999999999999999999884        24578899999999  


Q ss_pred             cccccCCCCCCchhhHHhhh
Q psy14015        289 DHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       289 ~~~~~~~~~~~~Vr~~~i~~  308 (318)
                              ++++||..+++.
T Consensus       181 --------~~~~vr~~A~~a  192 (201)
T 3ltj_A          181 --------GTGFARKVAVNY  192 (201)
T ss_dssp             --------CCHHHHHHHHHH
T ss_pred             --------CCHHHHHHHHHH
Confidence                    999999998854

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.66  E-value=1.3e-15  Score=143.41  Aligned_cols=245  Identities=13%  Similarity=0.048  Sum_probs=185.6

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCc---ccchhc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGG---PEYVHC   90 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~---~~~~~~   90 (318)
                      .++..+.+++..+ ..++..++.++...+++..+.+++|.+.+.++++  ++ +|..++..|+.+++...+   ......
T Consensus        94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  172 (462)
T 1ibr_B           94 YVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (462)
T ss_dssp             HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHH
T ss_pred             HHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHH
Confidence            3567778888888 8899999999988777556789999999988776  66 999999999998864422   233456


Q ss_pred             cchHHhhhccCc--hhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015         91 LLPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        91 llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      +++.+..++.|+  +..||..|+.++..+...+...    .....+++.+.++..++++.+|..++..|+.+........
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  252 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888  6899999999999987655321    1234568888888888889999999988876654332210


Q ss_pred             HHHHHHHHHhhccCCCcccccchhhcCccchH-HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---------------
Q psy14015        165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKA-ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---------------  228 (318)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~-~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---------------  228 (318)
                      +                           .... .+++.+...++|.++.||..++..++.++...               
T Consensus       253 ~---------------------------~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (462)
T 1ibr_B          253 E---------------------------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR  305 (462)
T ss_dssp             T---------------------------TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred             H---------------------------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            0                           0113 67888888889999999999999999988753               


Q ss_pred             ---c--hhh---hHhhHHHHHHHhhc-------CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccc
Q psy14015        229 ---E--VDY---LKTDIIPMFVNLAQ-------DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDH  290 (318)
Q Consensus       229 ---~--~~~---~~~~llp~l~~ll~-------D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~  290 (318)
                         .  ...   ....++|.+...+.       |.+|.+|.+++.+++.++..+| +.....++|.+...++|++|.
T Consensus       306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHH
T ss_pred             CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChH
Confidence               0  001   12568887776664       4578999999999999999999 456678999999999994443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.65  E-value=1.9e-15  Score=133.92  Aligned_cols=219  Identities=15%  Similarity=0.159  Sum_probs=159.7

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhh-hcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL   91 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~-l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l   91 (318)
                      .++.+++.++++++.+|..++..|+.++.   .......+++.+.. +.+|+++ ||..++..|+.+....  +.....+
T Consensus        55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~--~~~~~~~  129 (280)
T 1oyz_A           55 AVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN--PIYSPKI  129 (280)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CcccHHH
Confidence            36778889999999999999999988631   22233456777763 5677766 9999999999886311  2234557


Q ss_pred             chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015         92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (318)
Q Consensus        92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~  171 (318)
                      +|.+..++.|+++.||..|+.++..+...        ..+|.+.++++|+++.+|..|+..++.+...     .......
T Consensus       130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~  196 (280)
T 1oyz_A          130 VEQSQITAFDKSTNVRRATAFAISVINDK--------ATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDC  196 (280)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHH
Confidence            88888899999999999999998877542        2677888889999999999999999876311     1223344


Q ss_pred             HHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC-Cc
Q psy14015        172 FRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD-EQ  249 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D-~~  249 (318)
                      +..+..+..+.||.. +..++.......+|.+..+++|++  ||..++.+|+.++.        ...+|.+..++++ ++
T Consensus       197 L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~  266 (280)
T 1oyz_A          197 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDD  266 (280)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCC
Confidence            556667777888874 333333335677899999999865  99999999998753        3578888888865 45


Q ss_pred             HHHHHHHHHHH
Q psy14015        250 DSVRLLAVEAC  260 (318)
Q Consensus       250 ~~VR~aa~~~l  260 (318)
                      ..++..++.++
T Consensus       267 ~~~~~~~~~~l  277 (280)
T 1oyz_A          267 NEIITSAIDKL  277 (280)
T ss_dssp             CHHHHHHHHHH
T ss_pred             cHHHHHHHHHh
Confidence            66777666654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.65  E-value=4.2e-15  Score=156.97  Aligned_cols=258  Identities=13%  Similarity=0.083  Sum_probs=201.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcC------------------------------
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIY------------------------------   62 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~------------------------------   62 (318)
                      ++.++..++++++.+|..++..+..++..+|.+.  ....++|.+.+.+.                              
T Consensus       257 ~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~  336 (1230)
T 1u6g_C          257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSD  336 (1230)
T ss_dssp             HHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcc
Confidence            5677788889999999999999999998877541  34566777655442                              


Q ss_pred             -------ChHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---------
Q psy14015         63 -------DEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---------  123 (318)
Q Consensus        63 -------D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---------  123 (318)
                             |..| ||.+++..|..++...+.  ..+.+.++|.+...+.|.++.||..++.++..++...+.         
T Consensus       337 ~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~  416 (1230)
T 1u6g_C          337 DEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPD  416 (1230)
T ss_dssp             --------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcc
Confidence                   1125 899999999999875553  345566888888888999999999999999988875432         


Q ss_pred             ------------hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcC
Q psy14015        124 ------------HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG  191 (318)
Q Consensus       124 ------------~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~  191 (318)
                                  +.....++|.+.+.++|++|.+|..++..++.++........                          
T Consensus       417 ~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~--------------------------  470 (1230)
T 1u6g_C          417 AMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT--------------------------  470 (1230)
T ss_dssp             ----CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG--------------------------
T ss_pred             ccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH--------------------------
Confidence                        234445788888889999999999999888876544322110                          


Q ss_pred             ccchHHHHHHHHHhhcCCCH--HHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        192 SGVKAELRSHFRNLCQDDTP--MVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       192 ~~~~~~ll~~l~~l~~D~~~--~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                       .....++|.+.+.++|+++  .+|..++..++.+....|++.   ....++|.+...++|+++.||..++.+++.+++.
T Consensus       471 -~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~  549 (1230)
T 1u6g_C          471 -QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV  549 (1230)
T ss_dssp             -GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence             1336789999999999875  999999999999998877764   4567999999999999999999999999999998


Q ss_pred             CCh---------hhhhHhhHHHHHHhc--cccccccccCCCCCCchhhHHhhhh
Q psy14015        267 LSQ---------SDVEQLVMPTLRQCS--VQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       267 l~~---------~~~~~~l~p~l~~ll--~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +|+         ....+.++|.++..+  .|          ++++||.+++.+.
T Consensus       550 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d----------~~~~vr~~a~~~l  593 (1230)
T 1u6g_C          550 IRPLDQPSSFDATPYIKDLFTCTIKRLKAAD----------IDQEVKERAISCM  593 (1230)
T ss_dssp             HCCSSSCCCCCCHHHHHHHHHHHHHHHSCSS----------SCHHHHHHHHHHH
T ss_pred             hcCcccccccchHHHHHHHHHHHHHHHhccC----------CCHHHHHHHHHHH
Confidence            876         134567999999999  77          7888888777543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.64  E-value=3.4e-15  Score=140.43  Aligned_cols=282  Identities=12%  Similarity=0.092  Sum_probs=202.7

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHh-hCh--Hh-Hhh-chhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc---
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQ--ER-TRG-ELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG---   84 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~--~~-~~~-~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~---   84 (318)
                      ++.+++.++++++.+|..++..|..+... -.+  .. ... .++|.+.+++.++ ++ +|..++..|..++..-..   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            66788899999999999999999998652 121  11 223 6899998888776 56 999999999998752110   


Q ss_pred             ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcC-CCchhhhhhhhhhhhhcccc
Q psy14015         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~~~  160 (318)
                      ......++|.+..++.++++.||..|+.+|..++...+.  + .....++|.+.+++++ +++.+|..|+..++.+....
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            011245889999999999999999999999999975432  1 1223478888888885 68999999999999887543


Q ss_pred             -C---cchHHHHHHHHHhhccCCCcccccc-hhh---cCc--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q psy14015        161 -T---AGVKAELRSHFRNLCQDDTPMQQGH-VWE---CGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL  224 (318)
Q Consensus       161 -~---~~~~~~l~~~~~~l~~~~~~~vR~~-v~~---~~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l  224 (318)
                       .   ......+...+..+..+.++.+|.. ++.   +..        .....++|.+.+++.++++.||..++.+|+.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             1   1111233344555566666666642 111   111        11235789999999999999999999999999


Q ss_pred             HHHhch--h-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCC
Q psy14015        225 AKVVEV--D-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEF  298 (318)
Q Consensus       225 ~~~~~~--~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~  298 (318)
                      +...+.  + .....++|.+..+++++++.+|..++.++++++..-...   .....++|.+..+++|          ++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----------~~  331 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT----------AE  331 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH----------SC
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc----------CC
Confidence            863221  1 112358999999999999999999999999998532111   1124689999999999          78


Q ss_pred             CchhhHHh
Q psy14015        299 HPLELHVI  306 (318)
Q Consensus       299 ~~Vr~~~i  306 (318)
                      +.||..++
T Consensus       332 ~~v~~~a~  339 (450)
T 2jdq_A          332 FRTRKEAA  339 (450)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.62  E-value=5.4e-15  Score=128.55  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=150.4

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCcc--cchhc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGGP--EYVHC   90 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~~--~~~~~   90 (318)
                      .+.+.++|.+|..|.+++..|..+....+.  .....++++.+..++. |.+. ||.+++..++.++..+|..  .+...
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~   98 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA   98 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            477888999999999999999999765321  1123578889988884 8777 9999999999999877653  24455


Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc--hHHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--VKAEL  168 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~l  168 (318)
                      ++|.+...+.|....||.+|..++..++...+-    ..++|.+...+++++|.+|..++..++.++...+..  ...  
T Consensus        99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~--  172 (242)
T 2qk2_A           99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK--  172 (242)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH--
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH--
Confidence            889999999999999999999999999987753    347888888889999999999999998866554321  111  


Q ss_pred             HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh
Q psy14015        169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD  231 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~  231 (318)
                                               ....++|.+..+++|++++||.+|..+++.++..+|.+
T Consensus       173 -------------------------~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          173 -------------------------LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             -------------------------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             -------------------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence                                     22578999999999999999999999999999999964

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.62  E-value=5.2e-15  Score=142.93  Aligned_cols=284  Identities=13%  Similarity=0.127  Sum_probs=206.6

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-h---HhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc---
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG-Q---ERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG---   84 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~---~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~---   84 (318)
                      .++.+++.|+++++.+|..++..|..++...+ +   .-....++|.+.+++.++ ++ +|..++..|..++..-..   
T Consensus        88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~  167 (530)
T 1wa5_B           88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  167 (530)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            38899999999999999999999999864321 1   112456899999999875 56 999999999999762110   


Q ss_pred             ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      .......+|.+..++.+++..||..|+.+|..++...+.   ......++|.+.+++.+++..+|..|+..|+.++....
T Consensus       168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  247 (530)
T 1wa5_B          168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  247 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence            011245788999999999999999999999999865322   11233578999999999889999999999998875431


Q ss_pred             c----chHHHHHHHHHhhccCCCcccccc-hhhc---Cc--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015        162 A----GVKAELRSHFRNLCQDDTPMQQGH-VWEC---GS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA  225 (318)
Q Consensus       162 ~----~~~~~l~~~~~~l~~~~~~~vR~~-v~~~---~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~  225 (318)
                      .    .....+...+..+..+.++.+|.. ++.+   ..        .....++|.+..++.++++.||..++.+|+.++
T Consensus       248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence            1    112233355556666666766653 1111   11        112357899999999999999999999999998


Q ss_pred             HHhc---hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHHHHHhccccccccccCCCCC
Q psy14015        226 KVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPTLRQCSVQIVDHKFCPNNEF  298 (318)
Q Consensus       226 ~~~~---~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D~~~~~~~~~~~~  298 (318)
                      ..-+   .......++|.+..+++++++.||..++.+|+.++..- ++.    ....++|.|..++.+          ++
T Consensus       328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~----------~~  396 (530)
T 1wa5_B          328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEV----------AE  396 (530)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHH----------SC
T ss_pred             cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhc----------CC
Confidence            4221   11123468999999999999999999999999998632 222    124589999999999          67


Q ss_pred             CchhhHHhhh
Q psy14015        299 HPLELHVISA  308 (318)
Q Consensus       299 ~~Vr~~~i~~  308 (318)
                      +.||..++..
T Consensus       397 ~~v~~~a~~a  406 (530)
T 1wa5_B          397 YKTKKEACWA  406 (530)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.62  E-value=2.3e-14  Score=138.37  Aligned_cols=258  Identities=13%  Similarity=0.059  Sum_probs=195.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhh---ChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALAL---GQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEY   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~l---g~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~   87 (318)
                      ++.++..++++++.+|..++..|..++..-   ........++|.+..++.+.++ ||..++..|..++..-+.   ...
T Consensus       175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  254 (530)
T 1wa5_B          175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV  254 (530)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence            678888899999999999999999997431   1111234678889888887666 999999999999853211   123


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      ...++|.+..++.++++.||..|+.+|..++...+.  +. +...++|.+.+++.++++.+|..|+..++.+...-.. .
T Consensus       255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-~  333 (530)
T 1wa5_B          255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-Q  333 (530)
T ss_dssp             HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-H
T ss_pred             HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH-H
Confidence            356889999999999999999999999999865332  11 2235789999999999999999999999877543211 1


Q ss_pred             HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHH
Q psy14015        165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMF  241 (318)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l  241 (318)
                      ...+                         ....++|.+..+++++++.+|+.|+.+|+.++..-..   ..+...++|.+
T Consensus       334 ~~~~-------------------------~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L  388 (530)
T 1wa5_B          334 TQVV-------------------------INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL  388 (530)
T ss_dssp             HHHH-------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             HHHH-------------------------HHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            1111                         1235789999999999999999999999999852111   11224588999


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhCCh--hhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        242 VNLAQDEQDSVRLLAVEACVSIASLLSQ--SDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       242 ~~ll~D~~~~VR~aa~~~l~~l~~~l~~--~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ..+++++++.||..++.+|++++...++  +..    ...++|.|..++.+          +++.||..+...
T Consensus       389 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~----------~~~~v~~~al~a  451 (530)
T 1wa5_B          389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI----------ADNRIIEVTLDA  451 (530)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT----------CCHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHH
Confidence            9999999999999999999999987554  322    23489999999999          788888776643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.55  E-value=2e-13  Score=131.62  Aligned_cols=255  Identities=15%  Similarity=0.115  Sum_probs=188.4

Q ss_pred             chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC----hHhHhhchhhhhhhhcCChH-H-HHHHHHHHHcccccCcCccc
Q psy14015         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALG----QERTRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGPE   86 (318)
Q Consensus        13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg----~~~~~~~llp~l~~l~~D~~-~-VR~~aa~~L~~l~~~~~~~~   86 (318)
                      ..++.+++.|+++++.+|..++..|..++..-+    .......++|.|.+++.+++ + +|..++..|..++..  .+.
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~--~~~  151 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG--TSE  151 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS--CHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC--CHH
Confidence            348899999999999999999999999875432    11134578999999888765 5 999999999999862  111


Q ss_pred             c-----hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhc
Q psy14015         87 Y-----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCY  157 (318)
Q Consensus        87 ~-----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~  157 (318)
                      .     ....+|.+..++.++++.||..|+.+|..++...+.  .. .....+|.+.+++ +++++.+|..|+..|..++
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1     124788899999999999999999999999865332  11 2223677777877 6678899999988888665


Q ss_pred             cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH
Q psy14015        158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK  234 (318)
Q Consensus       158 ~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~  234 (318)
                      ........                           .....++|.+..++.++++.||..++.+|+.++..-..   ..+.
T Consensus       232 ~~~~~~~~---------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~  284 (528)
T 4b8j_A          232 RGKPQPSF---------------------------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (528)
T ss_dssp             CSSSCCCH---------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             cCCCCCcH---------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44321100                           12245789999999999999999999999999853211   1123


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCC-CCchhhHHh
Q psy14015        235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNE-FHPLELHVI  306 (318)
Q Consensus       235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~-~~~Vr~~~i  306 (318)
                      ..++|.+..+++++++.||..++.+|+.++..-...   .....++|.+..++.+          + .+.||..++
T Consensus       285 ~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~A~  350 (528)
T 4b8j_A          285 AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ----------NLKKSIKKEAC  350 (528)
T ss_dssp             TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS----------CCCHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC----------CCcHHHHHHHH
Confidence            357899999999999999999999999998632211   1123478999999998          5 666665554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.53  E-value=7.1e-13  Score=127.72  Aligned_cols=258  Identities=14%  Similarity=0.084  Sum_probs=193.8

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhc-CChHH-HHHHHHHHHcccccCcCc--c
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETI-YDEDE-VLLALAEQLGTFTPNVGG--P   85 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~-~D~~~-VR~~aa~~L~~l~~~~~~--~   85 (318)
                      -++.++..++++++.+|..++..|+.++.. ++.    -.....+|.+..++ ++.++ ++..++..|..++..-..  .
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~  239 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF  239 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence            467888999999999999999999999743 221    12235678888888 55555 999999999999864211  1


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .....++|.+..++.++++.||..|+.+|..++...+..  . +...++|.+.+++.++++.+|..|+..++.+......
T Consensus       240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~  319 (528)
T 4b8j_A          240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA  319 (528)
T ss_dssp             HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence            233558899999999999999999999999998654321  1 2234789999999999999999999999877643211


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhch---hhhHhhHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVEV---DYLKTDII  238 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~---~~~~~~ll  238 (318)
                       ....+                         ....++|.+..+++++ ++.+|+.|+.+|+.++..-..   ..+...++
T Consensus       320 -~~~~~-------------------------~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i  373 (528)
T 4b8j_A          320 -QTQCI-------------------------IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII  373 (528)
T ss_dssp             -HHHHH-------------------------HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred             -HHHHH-------------------------HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence             11111                         2245789999999998 999999999999999852111   11233678


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      |.+..+++++++.+|..++.+|+.++..-+++...    ..++|.|..++.+          ++++|+..++..
T Consensus       374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----------~d~~v~~~al~~  437 (528)
T 4b8j_A          374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----------PDIRIVTVCLEG  437 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC----------CCHHHHHHHHHH
Confidence            99999999999999999999999999774444322    3589999999999          788887766543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.53  E-value=5.7e-13  Score=115.15  Aligned_cols=231  Identities=16%  Similarity=0.089  Sum_probs=174.5

Q ss_pred             chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---c
Q psy14015         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---P   85 (318)
Q Consensus        13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~   85 (318)
                      ..|+.+++.++++++.+|..++..|..++..-..   .......+|.+.++++++++ +|..++..|..++..-..   .
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            3578899999999999999999999999754221   11234678999999988766 999999999999752110   0


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      ......+|.+..++.++++.+|..|+.+|..++...+.  . ......+|.+.++++++++.+|..++..++.+...-. 
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence            11234688899999999999999999999999964322  1 1223478999999999999999999999987754321 


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIP  239 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp  239 (318)
                      ..+..+                         .....+|.+.++++++++.+|..++.+|+.++..-..   ......++|
T Consensus       161 ~~~~~~-------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  215 (252)
T 4hxt_A          161 EAIKAI-------------------------VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE  215 (252)
T ss_dssp             HHHHHH-------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH
T ss_pred             HHHHHH-------------------------HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            111111                         2245789999999999999999999999999852111   112345889


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      .+..+++++++.+|..++.++.+++..-+.
T Consensus       216 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          216 VLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999999975543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.51  E-value=2.7e-15  Score=130.31  Aligned_cols=183  Identities=22%  Similarity=0.212  Sum_probs=137.5

Q ss_pred             HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh
Q psy14015         20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL   98 (318)
Q Consensus        20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l   98 (318)
                      ..++|+++.+|..+++.|       ++        ..+..+++|+++ ||..++..|+       .        +.+..+
T Consensus        57 ~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~l  106 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL  106 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred             HHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHH
Confidence            345899999999999965       21        346788899888 9999997643       1        467888


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccC
Q psy14015         99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD  178 (318)
Q Consensus        99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~  178 (318)
                      ++|+++.||..++..+       +.+        .+..+++|+++.||..++..++       .       ..+..+.+|
T Consensus       107 l~D~d~~VR~~aA~~l-------~~~--------~L~~L~~D~d~~VR~~aA~~l~-------~-------~~l~~l~~D  157 (244)
T 1lrv_A          107 MFDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRIP-------P-------GRLFRFMRD  157 (244)
T ss_dssp             TTCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHSC-------G-------GGGGGTTTC
T ss_pred             HcCCCHHHHHHHHHhC-------CHH--------HHHHHHcCCCHHHHHHHHHhcC-------H-------HHHHHHHcC
Confidence            9999999999988853       221        2456789999999999987532       1       235577888


Q ss_pred             CCcccccchhh-cCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHH
Q psy14015        179 DTPMQQGHVWE-CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAV  257 (318)
Q Consensus       179 ~~~~vR~~v~~-~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~  257 (318)
                      ..+.||..+.. ++       .+.+..+++|++|.||.+++.++       +.        +.+..+++|++|.||.+++
T Consensus       158 ~d~~VR~~aa~~l~-------~~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~VR~~aa  215 (244)
T 1lrv_A          158 EDRQVRKLVAKRLP-------EESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTVRLAAV  215 (244)
T ss_dssp             SCHHHHHHHHHHSC-------GGGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHcCC-------HHHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHH
Confidence            88888874321 21       14566889999999999999874       21        3567889999999999999


Q ss_pred             HHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        258 EACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       258 ~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      .+++               .+.+..| +|          +++.||..++++.
T Consensus       216 ~~l~---------------~~~L~~L-~D----------~~~~VR~aa~~~L  241 (244)
T 1lrv_A          216 EHAS---------------LEALREL-DE----------PDPEVRLAIAGRL  241 (244)
T ss_dssp             HHSC---------------HHHHHHC-CC----------CCHHHHHHHHCCC
T ss_pred             HcCC---------------HHHHHHc-cC----------CCHHHHHHHHHHh
Confidence            8854               2566667 99          9999999988653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.50  E-value=4.2e-13  Score=116.55  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=170.4

Q ss_pred             CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc-
Q psy14015         11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG-   84 (318)
Q Consensus        11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~-   84 (318)
                      .-.....+.+.|+++++.+|..++..|..+... .++    ......+|.+.++++++++ +|..++..|..++..-.. 
T Consensus        10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (252)
T 4db8_A           10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (252)
T ss_dssp             TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            334477899999999999999999999776543 211    1234678999999988666 999999999999752110 


Q ss_pred             --ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         85 --PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        85 --~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                        .......+|.+..++.++++.||..|+.+|..++......   ......+|.+.++++++++.+|..|+..++.+...
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence              0112337888999999999999999999999998764332   12334899999999999999999999999877543


Q ss_pred             cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--h-hhhHhh
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--V-DYLKTD  236 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~-~~~~~~  236 (318)
                      -. .....+                         .....+|.+.++++++++.+|..++.+|+.++..-.  . ......
T Consensus       169 ~~-~~~~~~-------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  222 (252)
T 4db8_A          169 GN-EQIQAV-------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG  222 (252)
T ss_dssp             CH-HHHHHH-------------------------HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             Ch-HHHHHH-------------------------HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            21 111111                         123468999999999999999999999999984211  1 112335


Q ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        237 IIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       237 llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      ++|.+..+++++++.+|..++.+|.+++
T Consensus       223 ~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          223 ALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            8999999999999999999999988765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.49  E-value=8.9e-13  Score=129.20  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=85.2

Q ss_pred             CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc
Q psy14015          9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY   87 (318)
Q Consensus         9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~   87 (318)
                      |..+.-+..+.+.++|+|+.+|..+++.|+.+.   +++ ..+.+.|.+.+++.|.++ ||+.|+..+.++.+.  .++.
T Consensus        82 e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~-~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~--~p~~  155 (591)
T 2vgl_B           82 DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQM  155 (591)
T ss_dssp             HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGG-GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS--SCCC
T ss_pred             hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh--Chhh
Confidence            333445667778899999999999988887753   333 667788889999999888 999999999998762  2233


Q ss_pred             hh--ccchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015         88 VH--CLLPPLESLATVEETVVRDKAVESLRLISAQHS  122 (318)
Q Consensus        88 ~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  122 (318)
                      ..  .++|.+..++.|+++.||..|+.++..++..-+
T Consensus       156 ~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          156 VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence            33  478899999999999999999999999987643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.48  E-value=2.5e-13  Score=133.80  Aligned_cols=251  Identities=12%  Similarity=0.082  Sum_probs=148.9

Q ss_pred             CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015          5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG   83 (318)
Q Consensus         5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~   83 (318)
                      +..||..+.-+..+.+.++|+|+.+|..+++.|+.++   +++ ..+.++|.+.+++.|.++ ||++|+..+.++...  
T Consensus        99 ~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~--  172 (618)
T 1w63_A           99 DERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSE-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK--  172 (618)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH--
T ss_pred             CCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--
Confidence            3445545667888999999999999999999999974   333 667889999999999888 999999999998762  


Q ss_pred             cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh-hHHhhhHHHHHHHhhcC---------------CCchhhh
Q psy14015         84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDLEAHFVPLVQRLASG---------------DWFTSRT  147 (318)
Q Consensus        84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~ilp~~~~l~~d---------------~~~~vR~  147 (318)
                      .++..+.+++.+..++.|.+..|+..|+.++..++..-+. ......++|.+.+++++               .+.-.+.
T Consensus       173 ~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~  252 (618)
T 1w63_A          173 VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV  252 (618)
T ss_dssp             CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence            3455567899999999999999999999999999865321 01122345544443321               1223344


Q ss_pred             hhhhhhhhhccccCcchHHHHHHHHHhhccCC------Ccccccc----hhhcCc--cchHHHHHHHHHhhcCCCHHHHH
Q psy14015        148 SACGLFSVCYPRVTAGVKAELRSHFRNLCQDD------TPMQQGH----VWECGS--GVKAELRSHFRNLCQDDTPMVRR  215 (318)
Q Consensus       148 ~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~------~~~vR~~----v~~~~~--~~~~~ll~~l~~l~~D~~~~VR~  215 (318)
                      .++.+++.+...- ......+.+.+..+++..      ++.|...    +..+..  .......+.+..++.++++++|.
T Consensus       253 ~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~  331 (618)
T 1w63_A          253 RILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY  331 (618)
T ss_dssp             HHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence            4555555543321 111112222222222110      0011100    000110  11123455566666666667777


Q ss_pred             HHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        216 AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       216 ~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .+..+|+.++..-+  .......+.+...++|++..||..+++.+..++
T Consensus       332 ~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~  378 (618)
T 1w63_A          332 VALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALV  378 (618)
T ss_dssp             HHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence            77777777665421  112333444455555555555555555444443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.42  E-value=6e-12  Score=108.65  Aligned_cols=218  Identities=16%  Similarity=0.097  Sum_probs=162.8

Q ss_pred             hhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HH
Q psy14015         54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DL  126 (318)
Q Consensus        54 lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~  126 (318)
                      +|.+.++++++++ +|..++..|..++..-..   .......+|.+..++.+++..+|..|+.+|..++...+.  . ..
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            5777777776556 999999999999753210   011234788899999999999999999999999865322  1 12


Q ss_pred             hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh
Q psy14015        127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC  206 (318)
Q Consensus       127 ~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~  206 (318)
                      ....+|.+.+++++++..+|..|+..++.+...-. ..+..+                         .....+|.+.+++
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~-------------------------~~~~~i~~L~~~l  137 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAIKAI-------------------------VDAGGVEVLVKLL  137 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHH-------------------------HHTTHHHHHHHHT
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHH-------------------------HHCCCHHHHHHHH
Confidence            23478999999999999999999999987754221 122221                         2245789999999


Q ss_pred             cCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHH
Q psy14015        207 QDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPT  279 (318)
Q Consensus       207 ~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~  279 (318)
                      +++++.+|..++.+|+.++..-+.   .......+|.+..+++++++.+|..++.++..++.. .++.    ....++|.
T Consensus       138 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~  216 (252)
T 4hxt_A          138 TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEV  216 (252)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHH
Confidence            999999999999999999863211   112345899999999999999999999999999862 2221    12347899


Q ss_pred             HHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        280 LRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      +..++++          ++++||..+...
T Consensus       217 L~~ll~~----------~~~~v~~~a~~~  235 (252)
T 4hxt_A          217 LQKLLTS----------TDSEVQKEAQRA  235 (252)
T ss_dssp             HHHGGGC----------SCHHHHHHHHHH
T ss_pred             HHHHHCC----------CcHHHHHHHHHH
Confidence            9999999          888888887744

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.41  E-value=3.4e-12  Score=125.03  Aligned_cols=245  Identities=14%  Similarity=0.154  Sum_probs=179.0

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      .+..+.+.|++.+...|..+++++--+ ..+|.+  ...+.+.+.+++++++. +|+.+...+..+++.  .++....+.
T Consensus        14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~   88 (591)
T 2vgl_B           14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV   88 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence            478889999999999999888888754 346765  24567777788887666 999988888887652  233334456


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                      +.+..-++|+++.+|..|+.+++.+.    .....+.++|.+.++++|+++.||..|+..+++++...++..        
T Consensus        89 n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~--------  156 (591)
T 2vgl_B           89 NSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV--------  156 (591)
T ss_dssp             HHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH--------
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc--------
Confidence            67777789999999999988877764    234556688889999999999999999999887765332211        


Q ss_pred             HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCc
Q psy14015        173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQ  249 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~  249 (318)
                                           ....+++.+.++++|+++.||.+|+.+|++++..-+..   ......++.+.+.+.|.+
T Consensus       157 ---------------------~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~  215 (591)
T 2vgl_B          157 ---------------------EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT  215 (591)
T ss_dssp             ---------------------HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC
T ss_pred             ---------------------ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC
Confidence                                 11357899999999999999999999999998643211   112234555556667888


Q ss_pred             HHHHHHHHHHHHHHHhhCChh-hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        250 DSVRLLAVEACVSIASLLSQS-DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       250 ~~VR~aa~~~l~~l~~~l~~~-~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      ++.+..+++.++.++   +.+ .....+++.+..++++          .++.|++.+++..
T Consensus       216 ~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~----------~~~~V~~ea~~~i  263 (591)
T 2vgl_B          216 EWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSH----------ANSAVVLSAVKVL  263 (591)
T ss_dssp             HHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCS----------STTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcC----------CChHHHHHHHHHH
Confidence            888887777654433   222 2345689999999999          7777877777553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.41  E-value=7.2e-12  Score=109.45  Aligned_cols=192  Identities=11%  Similarity=0.112  Sum_probs=139.4

Q ss_pred             hhhhhhcCChHH-HHHHHHHHHcc-cccC----cC-cccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhhCC-hh-
Q psy14015         55 PFLTETIYDEDE-VLLALAEQLGT-FTPN----VG-GPEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQHS-PH-  124 (318)
Q Consensus        55 p~l~~l~~D~~~-VR~~aa~~L~~-l~~~----~~-~~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~-~~-  124 (318)
                      +.+.+.+++.+| -|+++...|.. ++..    .. ..++ ..++..+...+ +|.+..||..|+.++..+++.++ +. 
T Consensus        19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f   97 (249)
T 2qk1_A           19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF   97 (249)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            334445566777 78888877777 6531    10 1111 23566666666 78888899999999999998776 42 


Q ss_pred             --HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015        125 --DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF  202 (318)
Q Consensus       125 --~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l  202 (318)
                        .+...++|.+...++|....||..+...+-.++...+..                .+.          ..-+.+++.+
T Consensus        98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----------------~~~----------~~l~~ll~~l  151 (249)
T 2qk1_A           98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----------------ASS----------GRNEDMLKDI  151 (249)
T ss_dssp             CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----------------CTT----------CTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----------------ccC----------CcHHHHHHHH
Confidence              445568888888888887778876655554433322110                000          0135788999


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHHHhch--h---hhH-hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015        203 RNLCQDDTPMVRRAAAGKLGELAKVVEV--D---YLK-TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE  273 (318)
Q Consensus       203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~---~~~-~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~  273 (318)
                      ...+++.+|.+|..++..++.++...+.  +   ... ..++|.+.+++.|++..||.++.++++.++..+|.+...
T Consensus       152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~  228 (249)
T 2qk1_A          152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFV  228 (249)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9999999999999999999999988763  2   235 789999999999999999999999999999999987643

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.8e-12  Score=113.28  Aligned_cols=200  Identities=13%  Similarity=0.177  Sum_probs=152.0

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHH-HHHhhCh----HhHhhchhhhhhhhc-CChHH-HHHHHHHHHcccccCcC-cc---
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLST-IALALGQ----ERTRGELIPFLTETI-YDEDE-VLLALAEQLGTFTPNVG-GP---   85 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~-ia~~lg~----~~~~~~llp~l~~l~-~D~~~-VR~~aa~~L~~l~~~~~-~~---   85 (318)
                      .+.+.++|.+|..|.+++..|.. +......    ..-..+++..+.+.+ .|.+. ||..++..++.++..++ ..   
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34577899999999999999999 7632111    111246788888888 78777 99999999999998776 32   


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHH---hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL---EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .+...++|.+...++|....||.++..++..+++..++...   .+.+++.+...+++++|.+|..++..++.++.....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            23455888888888999999999999999999998854221   335777788888888999999999998877654332


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF  241 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l  241 (318)
                      .. ..+..                       .- +.++|.+.++++|.++.||.+|..+++.++..+|.+    .+.|++
T Consensus       180 ~~-~~l~~-----------------------~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l  231 (249)
T 2qk1_A          180 GY-STLQR-----------------------YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTL  231 (249)
T ss_dssp             CS-HHHHH-----------------------HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHH
T ss_pred             cc-hhHHH-----------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHH
Confidence            10 11101                       12 567999999999999999999999999999999974    366667


Q ss_pred             HHh
Q psy14015        242 VNL  244 (318)
Q Consensus       242 ~~l  244 (318)
                      ..+
T Consensus       232 ~~L  234 (249)
T 2qk1_A          232 EHL  234 (249)
T ss_dssp             HHS
T ss_pred             HHH
Confidence            666

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.38  E-value=5e-11  Score=115.12  Aligned_cols=257  Identities=14%  Similarity=0.127  Sum_probs=187.4

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChH------HHHHHHHHHHcccccCcC
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDED------EVLLALAEQLGTFTPNVG   83 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~------~VR~~aa~~L~~l~~~~~   83 (318)
                      .|+.++..+++++..+|..++..|+.++.. +++    -.....+|.+..++.+.+      .+.+.++..|..++..-.
T Consensus       163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  241 (529)
T 3tpo_A          163 AIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  241 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence            377888999999999999999999999743 222    122345677777765421      256777788887765322


Q ss_pred             c---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015         84 G---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCY  157 (318)
Q Consensus        84 ~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~  157 (318)
                      .   ......++|.|..++.++++.|+..|..+|..++......  . ...-++|.+.+++.+++..++..++..++.+.
T Consensus       242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  321 (529)
T 3tpo_A          242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  321 (529)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            1   1223558899999999999999999999999998754321  1 22347889999999999999999999888775


Q ss_pred             cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH
Q psy14015        158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK  234 (318)
Q Consensus       158 ~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~  234 (318)
                      ..- +..+..+                         .....++.+..+++++++.+|+.++.+|+.++..-..   ....
T Consensus       322 ~~~-~~~~~~i-------------------------~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~  375 (529)
T 3tpo_A          322 TGT-DEQTQKV-------------------------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN  375 (529)
T ss_dssp             TSC-HHHHHHH-------------------------HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             ccc-hHHHHHH-------------------------hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            432 1111111                         1234578899999999999999999999999852111   1123


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015        235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      ..++|.+..++++++..||..++.+|.+++..-..+..    ..-++|.|+.+|+.          .+++++..+..
T Consensus       376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~----------~d~~i~~~~L~  442 (529)
T 3tpo_A          376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA----------KDTKIIQVILD  442 (529)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC----------CCHHHHHHHHH
Confidence            45899999999999999999999999999876555432    23479999999998          77777766554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.36  E-value=2.5e-11  Score=116.75  Aligned_cols=258  Identities=14%  Similarity=0.124  Sum_probs=186.5

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChH------HHHHHHHHHHcccccCcC
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDED------EVLLALAEQLGTFTPNVG   83 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~------~VR~~aa~~L~~l~~~~~   83 (318)
                      .|+.++..|++++..+|..++..|+.++.. +++    -.....+|.+..++...+      .+.+.++..|..++..-.
T Consensus       144 aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  222 (510)
T 3ul1_B          144 AIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  222 (510)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence            377899999999999999999999999743 111    123345677777765421      256777788887765322


Q ss_pred             c---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015         84 G---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCY  157 (318)
Q Consensus        84 ~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~  157 (318)
                      .   -.....++|.+..++.++++.|+..|..+|..++......  . ...-++|.+.+++.+++..++..++..++.+.
T Consensus       223 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~  302 (510)
T 3ul1_B          223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  302 (510)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh
Confidence            1   1223558899999999999999999999999998654321  1 22347888999999999999999999888775


Q ss_pred             cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH
Q psy14015        158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK  234 (318)
Q Consensus       158 ~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~  234 (318)
                      ..-. ..+..+                         .....++.+..++++++..+|+.++.+|+.++..-..   ....
T Consensus       303 ~~~~-~~~~~i-------------------------~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~  356 (510)
T 3ul1_B          303 TGTD-EQTQKV-------------------------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN  356 (510)
T ss_dssp             TSCH-HHHHHH-------------------------HHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCH-HHHHHH-------------------------hhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHh
Confidence            4321 111111                         1233567888899999999999999999999752111   1123


Q ss_pred             hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ..++|.+..++++++..||..++.+|.+++..-..+..    ..-.+|.|+.+|+.          .+++++..+...
T Consensus       357 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~----------~d~~i~~~~L~a  424 (510)
T 3ul1_B          357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA----------KDTKIIQVILDA  424 (510)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----------CCHHHHHHHHHH
Confidence            45899999999999999999999999999976555432    23479999999999          777777666543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.34  E-value=1e-11  Score=107.76  Aligned_cols=217  Identities=17%  Similarity=0.148  Sum_probs=159.7

Q ss_pred             hhhhhhhhcCChHH-HHHHHHHHHcccccCcCc----ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH
Q psy14015         53 LIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD  125 (318)
Q Consensus        53 llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~  125 (318)
                      -.|.+...++++++ +|..++..|..+... ..    .......+|.+..++.++++.+|..|+.+|..++...+.  ..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            35666666666555 999999999665432 11    112234778899999999999999999999999864322  12


Q ss_pred             -HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH-HHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHH
Q psy14015        126 -LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK-AELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFR  203 (318)
Q Consensus       126 -~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~  203 (318)
                       ...-.+|.+.++++++++.+|..|+..++.+...-.  .+ ..+                         .....+|.+.
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~-------------------------~~~~~i~~L~  144 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAV-------------------------IDAGALPALV  144 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHH-------------------------HHTTHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--hHHHHH-------------------------HHCCCHHHHH
Confidence             223489999999999999999999999987743211  11 111                         2245789999


Q ss_pred             HhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhh
Q psy14015        204 NLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLV  276 (318)
Q Consensus       204 ~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l  276 (318)
                      ++++++++.||..++.+|+.++..-...   .....++|.+..+++++++.||..++.++..++.. +++.    ...-+
T Consensus       145 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~  223 (252)
T 4db8_A          145 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGA  223 (252)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCc
Confidence            9999999999999999999998532111   12345789999999999999999999999999842 2221    22348


Q ss_pred             HHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        277 MPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       277 ~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      +|.+..++.+          .+++||..+...
T Consensus       224 i~~L~~ll~~----------~~~~v~~~A~~~  245 (252)
T 4db8_A          224 LEKLEQLQSH----------ENEKIQKEAQEA  245 (252)
T ss_dssp             HHHHHTTTTC----------SSSHHHHTHHHH
T ss_pred             HHHHHHHhCC----------CCHHHHHHHHHH
Confidence            8999999999          889999887744

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.30  E-value=3.2e-11  Score=115.99  Aligned_cols=282  Identities=12%  Similarity=0.119  Sum_probs=194.1

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--h-Hh-HhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccc
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG--Q-ER-TRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEY   87 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~-~~-~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~   87 (318)
                      .|+.+++.++|+|...+..+++.+.++.+.-.  | +. ...-++|.|.++++. +.+ ++..++..|..++.  |.++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e~  135 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQ  135 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHHH
Confidence            38899999999999999999999998864421  1 12 234579999998864 445 99999999999975  22221


Q ss_pred             -----hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCc-----hhhhhhhhhhh
Q psy14015         88 -----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWF-----TSRTSACGLFS  154 (318)
Q Consensus        88 -----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~-----~vR~~a~~~l~  154 (318)
                           ....+|.|..++.+++..||+.|+.+|..++...+.  .. ...-.++.+..++.++..     .....++..+.
T Consensus       136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  215 (510)
T 3ul1_B          136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  215 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence                 223678999999999999999999999999865432  11 223367777777766432     23445666666


Q ss_pred             hhccccCcc----hHHHHHHHHHhhccCCCcccccc-hhh---cCc--------cchHHHHHHHHHhhcCCCHHHHHHHH
Q psy14015        155 VCYPRVTAG----VKAELRSHFRNLCQDDTPMQQGH-VWE---CGS--------GVKAELRSHFRNLCQDDTPMVRRAAA  218 (318)
Q Consensus       155 ~~~~~~~~~----~~~~l~~~~~~l~~~~~~~vR~~-v~~---~~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa  218 (318)
                      .++......    ....+...+..+..+.++.++.. ++.   +..        .....++|.+.+++.++++.|+..++
T Consensus       216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al  295 (510)
T 3ul1_B          216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  295 (510)
T ss_dssp             HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence            554432211    12334455666777777776652 221   111        12234679999999999999999999


Q ss_pred             HhhHHHHHHhch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccc
Q psy14015        219 GKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKF  292 (318)
Q Consensus       219 ~~L~~l~~~~~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~  292 (318)
                      .+++.++..-..   ..+....+|.+..++++++..+|..++.++.+++..-...   .....++|.+..++.+      
T Consensus       296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~------  369 (510)
T 3ul1_B          296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK------  369 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS------
T ss_pred             HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC------
Confidence            999998642111   1122347788889999999999999999999997532111   1223589999999999      


Q ss_pred             cCCCCCCchhhHHhh
Q psy14015        293 CPNNEFHPLELHVIS  307 (318)
Q Consensus       293 ~~~~~~~~Vr~~~i~  307 (318)
                          .+++||..++.
T Consensus       370 ----~~~~v~~~Aa~  380 (510)
T 3ul1_B          370 ----ADFKTQKEAAW  380 (510)
T ss_dssp             ----SCHHHHHHHHH
T ss_pred             ----CCHHHHHHHHH
Confidence                77777766553

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.30  E-value=5.4e-11  Score=100.25  Aligned_cols=190  Identities=15%  Similarity=0.114  Sum_probs=137.2

Q ss_pred             hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--
Q psy14015         50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--  123 (318)
Q Consensus        50 ~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--  123 (318)
                      .....|.+..+++++++ +|..++..|..++..-..   .......+|.+..++.++++.+|..|+.+|..++...+.  
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            34456777788877666 999999998888742110   011224678888888888999999999999998754322  


Q ss_pred             h-HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015        124 H-DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF  202 (318)
Q Consensus       124 ~-~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l  202 (318)
                      . ......+|.+.+++++++..+|..|+..++.+...-. .....+                         .....+|.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~-------------------------~~~~~i~~L  143 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV-------------------------IDAGALPAL  143 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHH-------------------------HHTTHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH-HHHHHH-------------------------HHcCcHHHH
Confidence            1 1223478899999999999999999999887754211 111111                         224578999


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        203 RNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                      .++++++++.+|..++.+|+.++..-..   .......+|.+.+++++++..||..++.++..++.
T Consensus       144 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999863111   11233589999999999999999999999988763

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.29  E-value=1.1e-10  Score=114.89  Aligned_cols=286  Identities=11%  Similarity=0.073  Sum_probs=186.1

Q ss_pred             CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc--CChHH-HHHHHHHHHcccccC
Q psy14015          5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI--YDEDE-VLLALAEQLGTFTPN   81 (318)
Q Consensus         5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~--~D~~~-VR~~aa~~L~~l~~~   81 (318)
                      +..||..+.-+..+.+.++|+|+.+|-.|++.|+.+.   .++ ..+.+.|.+.+++  .|.++ ||+.|+-.+.++.+.
T Consensus       103 ~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e-~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~  178 (621)
T 2vgl_A          103 NSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SRE-MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT  178 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHH-HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            4455666667888999999999999999999999973   344 7788999999998  89888 999999999988763


Q ss_pred             cCcccchh--ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCC-------------Cch
Q psy14015         82 VGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGD-------------WFT  144 (318)
Q Consensus        82 ~~~~~~~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~-------------~~~  144 (318)
                      -  ++...  .+++.+..++.|.+..|+..|+..+..++..-+..  .....++..+.+++.+.             ++-
T Consensus       179 ~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w  256 (621)
T 2vgl_A          179 S--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW  256 (621)
T ss_dssp             C--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH
T ss_pred             C--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch
Confidence            2  23334  68889999999999999999999999998764321  12223444455554321             222


Q ss_pred             hhhhhhhhhhhhccccCcchHHHHHHHHHhhccC--CCc------------cccc-c---hhhcC--ccchHHHHHHHHH
Q psy14015        145 SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD--DTP------------MQQG-H---VWECG--SGVKAELRSHFRN  204 (318)
Q Consensus       145 vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~--~~~------------~vR~-~---v~~~~--~~~~~~ll~~l~~  204 (318)
                      .+....++++.+...-....+..+.+.+..+...  ..|            .|.- .   +..+.  +.........+..
T Consensus       257 ~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~  336 (621)
T 2vgl_A          257 LSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ  336 (621)
T ss_dssp             HHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            4444555555443211112233232222222210  011            1000 0   00111  1223456677788


Q ss_pred             hhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHh
Q psy14015        205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC  283 (318)
Q Consensus       205 l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~l  283 (318)
                      ++.+.++++|..+..++..++...+.........+.+...++ |++..||..++..+..++   .+ ...+.++.-+...
T Consensus       337 ~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~-~Nv~~Iv~eL~~y  412 (621)
T 2vgl_A          337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DR-SNAQQIVAEMLSY  412 (621)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CH-HHHHHHHHHHHHH
T ss_pred             HhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---Ch-hhHHHHHHHHHHH
Confidence            888889999999999999998654322233556666767677 999999998887766554   33 3455677777777


Q ss_pred             ccccccccccCCCCCCchhhHHhhhhh
Q psy14015        284 SVQIVDHKFCPNNEFHPLELHVISATT  310 (318)
Q Consensus       284 l~D~~~~~~~~~~~~~~Vr~~~i~~~~  310 (318)
                      +.+          .+++.|..++.++.
T Consensus       413 l~~----------~d~~~~~~~v~~I~  429 (621)
T 2vgl_A          413 LET----------ADYSIREEIVLKVA  429 (621)
T ss_dssp             HHH----------CCHHHHHHHHHHHH
T ss_pred             HHh----------cCHHHHHHHHHHHH
Confidence            777          66677766666554

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.29  E-value=1.8e-11  Score=117.37  Aligned_cols=253  Identities=15%  Similarity=0.110  Sum_probs=172.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-----h
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-----V   88 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-----~   88 (318)
                      ++.+++.+++.+..+|..++..|..++...........++|.+.+++.++++ +|..++..|..++..  .+..     .
T Consensus       229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~  306 (529)
T 1jdh_A          229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQ  306 (529)
T ss_dssp             HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence            5667778888889999999999999876533322345678999999888766 999999999999752  1111     1


Q ss_pred             hccchHHhhhccC--chhHHHHHHHHHHHHHHhhCChh-----H-HhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhccc
Q psy14015         89 HCLLPPLESLATV--EETVVRDKAVESLRLISAQHSPH-----D-LEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPR  159 (318)
Q Consensus        89 ~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~-----~-~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~  159 (318)
                      ...+|.+..++.+  +++.+|..|+.+|..++...+..     . .....+|.+.++++++. +.+|..+++.++.+...
T Consensus       307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence            2356677777654  33799999999999997654331     1 22246888889988876 68999999998877642


Q ss_pred             cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHH----------------
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE----------------  223 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~----------------  223 (318)
                        ...+..+                         ....++|.+.++++++++.+|+.++++++.                
T Consensus       387 --~~~~~~~-------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~  439 (529)
T 1jdh_A          387 --PANHAPL-------------------------REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC  439 (529)
T ss_dssp             --GGGHHHH-------------------------HHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred             --hhhhHHH-------------------------HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence              2222222                         224578888888888888888876655543                


Q ss_pred             ------HHHHhc--hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHHHHHhcccccccc
Q psy14015        224 ------LAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPTLRQCSVQIVDHK  291 (318)
Q Consensus       224 ------l~~~~~--~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D~~~~~  291 (318)
                            ++....  ........+|.+..++.|++..||..++.++..++..  ++.    .....++.+..+++|     
T Consensus       440 ~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~-----  512 (529)
T 1jdh_A          440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS-----  512 (529)
T ss_dssp             HHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGC-----
T ss_pred             HHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcC-----
Confidence                  221100  0012234779999999999999999999999887732  211    123478999999999     


Q ss_pred             ccCCCCCCchhhHHhhh
Q psy14015        292 FCPNNEFHPLELHVISA  308 (318)
Q Consensus       292 ~~~~~~~~~Vr~~~i~~  308 (318)
                           ++++||..+...
T Consensus       513 -----~~~~v~~~a~~a  524 (529)
T 1jdh_A          513 -----RNEGVATYAAAV  524 (529)
T ss_dssp             -----SSHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHH
Confidence                 999999887643

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.29  E-value=1.8e-12  Score=112.50  Aligned_cols=163  Identities=21%  Similarity=0.238  Sum_probs=120.1

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHH
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPL   95 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l   95 (318)
                      .+...++|+++.||..++..|       ++        +.+..+++|+++ ||..++..+.               .+.+
T Consensus        78 ~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l~---------------~~~L  127 (244)
T 1lrv_A           78 ALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSALMFDEDREVRITVADRLP---------------LEQL  127 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHSC---------------TGGG
T ss_pred             HHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC---------------HHHH
Confidence            345567899999999999864       22        456788999888 9999998642               1346


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015         96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL  175 (318)
Q Consensus        96 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l  175 (318)
                      ..+++|++..||..++..       ++.+        .+..+.+|++|.||..++..++.              ..+..+
T Consensus       128 ~~L~~D~d~~VR~~aA~~-------l~~~--------~l~~l~~D~d~~VR~~aa~~l~~--------------~ll~~l  178 (244)
T 1lrv_A          128 EQMAADRDYLVRAYVVQR-------IPPG--------RLFRFMRDEDRQVRKLVAKRLPE--------------ESLGLM  178 (244)
T ss_dssp             GGGTTCSSHHHHHHHHHH-------SCGG--------GGGGTTTCSCHHHHHHHHHHSCG--------------GGGGGS
T ss_pred             HHHHcCCCHHHHHHHHHh-------cCHH--------HHHHHHcCCCHHHHHHHHHcCCH--------------HHHHHH
Confidence            777899999999998873       2221        24467899999999998876431              234466


Q ss_pred             ccCCCcccccchhh-cCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHH
Q psy14015        176 CQDDTPMQQGHVWE-CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRL  254 (318)
Q Consensus       176 ~~~~~~~vR~~v~~-~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~  254 (318)
                      .+|..+.||..+.. +.       .+.+..+++|++|.||+.++.+++               .+.+..| +|++|.||.
T Consensus       179 l~D~d~~VR~aaa~~l~-------~~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~  235 (244)
T 1lrv_A          179 TQDPEPEVRRIVASRLR-------GDDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRL  235 (244)
T ss_dssp             TTCSSHHHHHHHHHHCC-------GGGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHH
T ss_pred             HcCCCHHHHHHHHHhCC-------HHHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHH
Confidence            77777777763221 11       256788899999999999999976               2556678 999999999


Q ss_pred             HHHHHHH
Q psy14015        255 LAVEACV  261 (318)
Q Consensus       255 aa~~~l~  261 (318)
                      +++..++
T Consensus       236 aa~~~L~  242 (244)
T 1lrv_A          236 AIAGRLG  242 (244)
T ss_dssp             HHHCCC-
T ss_pred             HHHHHhC
Confidence            9987653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.27  E-value=2e-10  Score=110.08  Aligned_cols=260  Identities=10%  Similarity=0.008  Sum_probs=168.3

Q ss_pred             CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH-hH--hhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCc-
Q psy14015         11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE-RT--RGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGG-   84 (318)
Q Consensus        11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~-~~--~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~-   84 (318)
                      ...-++.+.+.|+++++.+|..++..|..++..-... ..  ....+|.+.+++. ++++ +|..++..|..++..-.. 
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~   94 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence            3345889999999999999999999999997431111 11  1246777777664 3344 999999999998652110 


Q ss_pred             -ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015         85 -PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        85 -~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~  160 (318)
                       .......+|.+..++.++++.+|..|+.+|..++...+.  ..+ ....+|.+.+++.++++.+|..++..+..+... 
T Consensus        95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-  173 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-  173 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence             011234778889999999999999999999999987433  222 345899999999999999999888877755331 


Q ss_pred             CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhc--hhhhHhhH
Q psy14015        161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVE--VDYLKTDI  237 (318)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~--~~~~~~~l  237 (318)
                      .+..+..+                         .....++.+.+++.+.+ ..++..++..|..++..-+  ........
T Consensus       174 ~~~~~~~i-------------------------~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~  228 (529)
T 1jdh_A          174 NQESKLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG  228 (529)
T ss_dssp             CHHHHHHH-------------------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH
T ss_pred             CHHHHHHH-------------------------HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence            11222221                         11234566666666544 3445555666655553111  01112346


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      +|.+..++++++..+|..++.++..++...++......++|.+.+++.+          ++++||..+.
T Consensus       229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~  287 (529)
T 1jdh_A          229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----------DDINVVTCAA  287 (529)
T ss_dssp             HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcC----------CCHHHHHHHH
Confidence            7777777777777777777777777776554433344577777777777          5666665544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.26  E-value=3.6e-10  Score=111.64  Aligned_cols=258  Identities=10%  Similarity=0.009  Sum_probs=173.4

Q ss_pred             chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh-H--hhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcc--
Q psy14015         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-T--RGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGP--   85 (318)
Q Consensus        13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~-~--~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~--   85 (318)
                      --|+.+...|+++++.+|..++..|..++..-.... .  ....+|.+.+++.+ +++ +|..++..|..++..-...  
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~   93 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   93 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence            347889999999999999999999999986533221 1  12467777776654 344 9999999999876531110  


Q ss_pred             cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      ......+|.+..++.++++.+|..|+.+|..++...+..  .+ ..-.+|.+.++++++++.++..++..|..+... ..
T Consensus        94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~  172 (644)
T 2z6h_A           94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQ  172 (644)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc-Cc
Confidence            112347788999999999999999999999999775331  22 345899999999998888888887777765432 11


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhch-h-hhHhhHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEV-D-YLKTDIIP  239 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~-~-~~~~~llp  239 (318)
                      ..+..+                         .....++.+.+++++.+ ..++..++..|..++..-.. + .+....+|
T Consensus       173 ~~~~~i-------------------------~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~  227 (644)
T 2z6h_A          173 ESKLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ  227 (644)
T ss_dssp             HHHHHH-------------------------HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHH
T ss_pred             HHHHHH-------------------------HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH
Confidence            222222                         11234677777776654 56677777777766632110 1 12234677


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      .+..++++++..+|..++.++..++..-.+......++|.+..++++          ++++||..+.
T Consensus       228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~----------~d~~v~~~a~  284 (644)
T 2z6h_A          228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----------DDINVVTCAA  284 (644)
T ss_dssp             HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcC----------CCHHHHHHHH
Confidence            77777788788888888888888776544333334577888888887          5666665544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.24  E-value=1.8e-10  Score=97.08  Aligned_cols=187  Identities=16%  Similarity=0.072  Sum_probs=139.3

Q ss_pred             chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ......|.+..++.++++.+|..|+.+|..++..-+..   ......+|.+.+++++++..+|..|+..++.+...-. .
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-E   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-H
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-H
Confidence            34557788999999999999999999999998543221   1223478999999999999999999999987753211 1


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPM  240 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~  240 (318)
                      .+..+                         .....+|.+.++++++++.+|..++.+|+.++..-..   .......+|.
T Consensus        88 ~~~~i-------------------------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  142 (210)
T 4db6_A           88 QIQAV-------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA  142 (210)
T ss_dssp             HHHHH-------------------------HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             HHHHH-------------------------HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence            11111                         1234689999999999999999999999999852111   1123458999


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        241 FVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +..++++++..+|..++.++.+++..-...   -...-.+|.+.+++.+          +++.||..+....
T Consensus       143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~v~~~a~~aL  204 (210)
T 4db6_A          143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH----------ENEKIQKEAQEAL  204 (210)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC----------SCHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHHH
Confidence            999999999999999999999998642211   1123488999999999          8999998887543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.23  E-value=8.3e-10  Score=106.57  Aligned_cols=255  Identities=13%  Similarity=0.144  Sum_probs=176.5

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--h--HhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCccc-
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG--Q--ERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPE-   86 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~--~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~-   86 (318)
                      .++.+++.++++++..+..+++.+..+...-.  +  .-....++|.|.+++.. +.+ ++..++..|..++..  .+. 
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~--~~~~  154 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG--TSEQ  154 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS--CHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence            37889999999999999999999988754311  1  11345689999988854 445 999999999999852  211 


Q ss_pred             ----chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCch-----hhhhhhhhhh
Q psy14015         87 ----YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWFT-----SRTSACGLFS  154 (318)
Q Consensus        87 ----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~~-----vR~~a~~~l~  154 (318)
                          .....+|.|..++.+++..||+.|+.+|..++...+.  .. ...-.+|.+..++.++...     ....++..+ 
T Consensus       155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L-  233 (529)
T 3tpo_A          155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL-  233 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH-
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH-
Confidence                1233678999999999999999999999999865322  11 2223677777777665322     122233333 


Q ss_pred             hhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--h-
Q psy14015        155 VCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--D-  231 (318)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~-  231 (318)
                                        ..+|....+...       -.....++|.+.+++++++++|+..++.+|..++..-..  + 
T Consensus       234 ------------------~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  288 (529)
T 3tpo_A          234 ------------------SNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM  288 (529)
T ss_dssp             ------------------HHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             ------------------HHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHH
Confidence                              333433322100       012356899999999999999999999999998853211  1 


Q ss_pred             hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       232 ~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      .....++|.+..++.++++.|+..++.+++.++..-...   ....-.+|.+..++++          +.++||..++
T Consensus       289 v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~----------~~~~i~~~a~  356 (529)
T 3tpo_A          289 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN----------PKTNIQKEAT  356 (529)
T ss_dssp             HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC----------SSHHHHHHHH
T ss_pred             HHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC----------CCHHHHHHHH
Confidence            123457899999999999999999999999987432111   1123478899999999          6666665544

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.21  E-value=5.2e-10  Score=112.96  Aligned_cols=246  Identities=10%  Similarity=0.022  Sum_probs=149.5

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh-H--hhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCc--ccc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-T--RGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGG--PEY   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~-~--~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~--~~~   87 (318)
                      |+.++..|+++++.+|..++..|..++...+... .  ....+|.|.+++. ++++ +|..++..|..++..-..  ...
T Consensus       152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~  231 (780)
T 2z6g_A          152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF  231 (780)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            5667777778888888888888888764321111 1  1246677666654 3244 888888888877542110  011


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      ....+|.+..++.++++.||..|+.+|..++...+.  ..+ ..-.+|.+.++++++++.+|..++..+..+... ..+.
T Consensus       232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~e~  310 (780)
T 2z6g_A          232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQES  310 (780)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHH
Confidence            234677788888888888888888888888876433  122 234778888888887777887777766544321 1112


Q ss_pred             HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH-HHHHHHHhhHHHHHHhc--hhhhHhhHHHHH
Q psy14015        165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM-VRRAAAGKLGELAKVVE--VDYLKTDIIPMF  241 (318)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~-VR~~aa~~L~~l~~~~~--~~~~~~~llp~l  241 (318)
                      +..+                         .....++.+.+++.+.+.+ ++..++..|..++..-.  ...+...++|.+
T Consensus       311 ~~~i-------------------------~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L  365 (780)
T 2z6g_A          311 KLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL  365 (780)
T ss_dssp             HHHH-------------------------HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHH
T ss_pred             HHHH-------------------------HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHH
Confidence            2111                         1123466667777665543 44456666666653211  111123356777


Q ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        242 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       242 ~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      ..++++++..++..++.++..++....+......++|.|..++++
T Consensus       366 l~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~  410 (780)
T 2z6g_A          366 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS  410 (780)
T ss_dssp             GGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC
T ss_pred             HHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC
Confidence            777777777777777777777776554433334577777777777

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.16  E-value=1.6e-10  Score=98.07  Aligned_cols=139  Identities=12%  Similarity=0.028  Sum_probs=109.5

Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~  166 (318)
                      .+.+++++..|..++.+.||..|+..+..+ .  .    ...++|.+.. +..|++|+||..++..++.++.        
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~----~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~--------  133 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K----DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK--------  133 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T----SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C----cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH--------
Confidence            566889999999999999999999977766 3  1    1348999988 8899999999998887764432        


Q ss_pred             HHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015        167 ELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ  246 (318)
Q Consensus       167 ~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~  246 (318)
                                 ..+|              +.+++.+...++|++..||+.|+..+--.+.........+.++|.+..+..
T Consensus       134 -----------~~~p--------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~  188 (240)
T 3l9t_A          134 -----------KIEY--------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKE  188 (240)
T ss_dssp             -----------HHCT--------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTT
T ss_pred             -----------hcCH--------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcC
Confidence                       1111              235788999999999999999999875444322222334679999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhh
Q psy14015        247 DEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~  266 (318)
                      |++..||++++.+|..+++.
T Consensus       189 D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          189 DVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             CSCHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999964

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.16  E-value=2.3e-09  Score=108.23  Aligned_cols=270  Identities=13%  Similarity=0.068  Sum_probs=170.5

Q ss_pred             HHHHHHHhcC-ccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccc-
Q psy14015         15 IAVLIDELKN-EDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEY-   87 (318)
Q Consensus        15 i~~l~~~l~~-~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~-   87 (318)
                      |+.+++.|++ +++.+|..++..|..++..-..  .......+|.|.+++++.++ +|..++..|..++..-..  ... 
T Consensus       194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~  273 (780)
T 2z6g_A          194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR  273 (780)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            6677778864 4899999999999997643111  11234678999999988776 999999999999753211  011 


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCch-hhhhhhhhhhhhccccCcc
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFT-SRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~-vR~~a~~~l~~~~~~~~~~  163 (318)
                      ....+|.+..++.+++..+|..+..++..++.....   .......++.+.+++.+.+.. .+..++.++..+..  ...
T Consensus       274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~--~~~  351 (780)
T 2z6g_A          274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSS  351 (780)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT--STT
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--ChH
Confidence            245788899999988899999999998877742211   112223567677777765543 33344444443322  111


Q ss_pred             hHHHH-----HHHHHhhccCCCcccccch-hh---c-----CccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015        164 VKAEL-----RSHFRNLCQDDTPMQQGHV-WE---C-----GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE  229 (318)
Q Consensus       164 ~~~~l-----~~~~~~l~~~~~~~vR~~v-~~---~-----~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~  229 (318)
                      .+..+     ...+..+..+..+.++..+ +.   +     .......++|.+.+++.++++.||..++.+|+.++..-.
T Consensus       352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            12211     1222222233222222210 00   0     012346799999999999999999999999999875311


Q ss_pred             h--hh-hHhhHHHHHHHhhcCC-c-HHHHHHHHHHHHHHHhhCChh-----h-hhHhhHHHHHHhccc
Q psy14015        230 V--DY-LKTDIIPMFVNLAQDE-Q-DSVRLLAVEACVSIASLLSQS-----D-VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       230 ~--~~-~~~~llp~l~~ll~D~-~-~~VR~aa~~~l~~l~~~l~~~-----~-~~~~l~p~l~~ll~D  286 (318)
                      .  .. .....+|.+..++.++ + ..||..++.+|+.++...+..     . .....+|.|..+|.+
T Consensus       432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~  499 (780)
T 2z6g_A          432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP  499 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence            1  11 1234778888887763 3 389999999999997543331     1 123578999999998

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.14  E-value=8.7e-10  Score=111.04  Aligned_cols=137  Identities=17%  Similarity=0.168  Sum_probs=87.3

Q ss_pred             hHHHHHHHhcCcc--------HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc
Q psy14015         14 PIAVLIDELKNED--------VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG   84 (318)
Q Consensus        14 ~i~~l~~~l~~~~--------~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~   84 (318)
                      .++.+.+.+.+++        ..+|..++-.|+.+.  +|..  .+++++.|..++.|++. +|..++-.|+.+----|.
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~--~GS~--~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn  505 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA--MGSA--NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK  505 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS--TTCC--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh--cCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC
Confidence            3556677787665        678999999998864  3432  23456666666655555 888888888865211122


Q ss_pred             ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      ....+   .++..+..+.++.||+.++.+|+.+.  ++.+..   +-+++..|..+.++.+|++++..++..+...+.
T Consensus       506 ~~ai~---~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~---~~~li~~L~~~~dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          506 PEAIH---DMFTYSQETQHGNITRGLAVGLALIN--YGRQEL---ADDLITKMLASDESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HHHHH---HHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGG---GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHH---HHHHHHhccCcHHHHHHHHHHHHhhh--CCChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence            33333   34444445667889999888888763  222221   223344556788899999999888866655544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.13  E-value=7.4e-09  Score=103.77  Aligned_cols=266  Identities=10%  Similarity=0.046  Sum_probs=182.0

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc----c---
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG-QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----P---   85 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~---   85 (318)
                      ++.++..+++++..++..++..+..++..-. .+...+.-+|.|..+++..+. +|..++..|.+++...+.    +   
T Consensus       292 v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~  371 (810)
T 3now_A          292 LQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG  371 (810)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh
Confidence            6788899999999999999999999753310 111222224899998877655 999999999988743221    1   


Q ss_pred             -cchhccchHHhhhccCc--hhHHHHHHHHHHHHHHhhCCh-hHHh--hhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         86 -EYVHCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSP-HDLE--AHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        86 -~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~-~~~~--~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                       .....+++.+..++.++  +.++|..|+++|.+++..... +.+.  .-++|.+.++++++...+.+.|+..|+.+...
T Consensus       372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~  451 (810)
T 3now_A          372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA  451 (810)
T ss_dssp             TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence             12345788898888877  889999999999999865332 2222  24788888998888888999999999887653


Q ss_pred             cCcchHHHHHHHHHhhccCCCcc------------cccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPM------------QQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV  227 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~------------vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~  227 (318)
                      -...-+  + ..+.++++.....            ++..+.   .......+|.|.+++..+++.+|+.|+.+|+.++..
T Consensus       452 ~d~q~~--~-~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~---~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d  525 (810)
T 3now_A          452 YEKQEM--L-PEMIELAKFAKQHIPEEHELDDVDFINKRIT---VLANEGITTALCALAKTESHNSQELIARVLNAVCGL  525 (810)
T ss_dssp             SCCCCC--C-CSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH---HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred             chhhhh--h-HHHHHHHHHhhccCccccccccHHHHHHHHH---HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            211000  0 0011222221110            000000   011234789999999999999999999999999852


Q ss_pred             hc-hh-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh-----hHhhHHHHHHhccc
Q psy14015        228 VE-VD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV-----EQLVMPTLRQCSVQ  286 (318)
Q Consensus       228 ~~-~~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~-----~~~l~p~l~~ll~D  286 (318)
                      -. .. .+..-.+|.+..++++.+..+|..++.+|..++..-.++..     ....+|.|..+|..
T Consensus       526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~  591 (810)
T 3now_A          526 KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ  591 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred             HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence            11 11 22334899999999999999999999999999876554432     12378999999984

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.13  E-value=3.3e-09  Score=106.32  Aligned_cols=245  Identities=11%  Similarity=0.082  Sum_probs=175.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc-----
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG--QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE-----   86 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~-----   86 (318)
                      ++.+...+++.++.+|..+++.|..++..-.  ..-.....+|.|..++.+.+. +|..++..|.+++.......     
T Consensus       497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~  576 (810)
T 3now_A          497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ  576 (810)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence            7788899999999999999999999973210  011233467888888877655 99999999999874211111     


Q ss_pred             chhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         87 YVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        87 ~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .....+|.|..++..+ +...+..|+.+|..++...+.   .-+....+|.+..++.+++..+|..|+..++.+...  .
T Consensus       577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~  654 (810)
T 3now_A          577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--E  654 (810)
T ss_dssp             HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--H
T ss_pred             hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--h
Confidence            1123677777787654 345566788899998875322   123334788999998888899999999999987642  2


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--hhhhH--hhHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLK--TDII  238 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~~~~~--~~ll  238 (318)
                      ..+..+    .   .                 ....++.+..+++.++..+|+.|+.+|+.++..-.  .+.+.  ...+
T Consensus       655 ~~~~~~----v---~-----------------~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I  710 (810)
T 3now_A          655 DVIKMF----E---G-----------------NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL  710 (810)
T ss_dssp             HHHHHH----H---S-----------------SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHH
T ss_pred             HHHHHH----H---h-----------------ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCH
Confidence            222221    1   0                 02358999999999999999999999999997321  12233  4588


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHHHHHhccc
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D  286 (318)
                      |.+..++++++..+|..++.++.+++.. +++.    ...-.+|.|..++++
T Consensus       711 ~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~  761 (810)
T 3now_A          711 DILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQL  761 (810)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhC
Confidence            9999999999999999999999999863 3332    223488999999987

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.12  E-value=6.8e-11  Score=92.68  Aligned_cols=117  Identities=12%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015        129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD  208 (318)
Q Consensus       129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D  208 (318)
                      ...+.+..+++|+++.+|..|+..|+.+.    .                                 .. ++.+.++++|
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---------------------------------~~-~~~L~~~L~d   53 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMG----D---------------------------------EA-FEPLLESLSN   53 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCS----S---------------------------------TT-HHHHHHGGGC
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---------------------------------hH-HHHHHHHHcC
Confidence            35667778889999999999988876431    1                                 11 4888899999


Q ss_pred             CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccc
Q psy14015        209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~  288 (318)
                      +++.||..++.+|+.++.        ...+|.+..+++|+++.||..++.+++.+.        ....+|.|..+++|  
T Consensus        54 ~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d--  115 (131)
T 1te4_A           54 EDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAET--  115 (131)
T ss_dssp             SCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTS--
T ss_pred             CCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhC--
Confidence            999999999999998753        346788888999999999999999999875        13468889999999  


Q ss_pred             cccccCCCCCCchhhHHhhhh
Q psy14015        289 DHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       289 ~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                              +++.||..++...
T Consensus       116 --------~~~~vr~~A~~aL  128 (131)
T 1te4_A          116 --------GTGFARKVAVNYL  128 (131)
T ss_dssp             --------CCTHHHHHHHHHG
T ss_pred             --------CCHHHHHHHHHHH
Confidence                    9999999988653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.12  E-value=2.3e-09  Score=105.83  Aligned_cols=245  Identities=11%  Similarity=0.039  Sum_probs=172.7

Q ss_pred             HHHHHHHhcCc-cHHHHHHHHHhHHHHHHhhCh-Hh-HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--c-c
Q psy14015         15 IAVLIDELKNE-DVQLRLNSIKKLSTIALALGQ-ER-TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--E-Y   87 (318)
Q Consensus        15 i~~l~~~l~~~-~~~~R~~~~~~L~~ia~~lg~-~~-~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--~-~   87 (318)
                      ++.+++.|++. ++.+|..++..|..++..-.. .. .....+|.+.++++++++ ++..++..|..++..-...  . .
T Consensus        58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~  137 (644)
T 2z6h_A           58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR  137 (644)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence            67788888754 889999999999987532111 11 223578899999988776 9999999999997532111  1 1


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhccccCcc
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ....+|.+..++.+++..++..++.+|..++...+.  . ....-.+|.+.+++.+.. ...+..++..+..+..  ...
T Consensus       138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~  215 (644)
T 2z6h_A          138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSS  215 (644)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTT
T ss_pred             HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--Ccc
Confidence            245788999999988889999999999998853221  1 122346777778877654 4556666666655432  122


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  243 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~  243 (318)
                      .+..+                         .....++.+.+++++.+..+|..++..|..++...........++|.+..
T Consensus       216 ~~~~l-------------------------~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~  270 (644)
T 2z6h_A          216 NKPAI-------------------------VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ  270 (644)
T ss_dssp             HHHHH-------------------------HHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHH
T ss_pred             cHHHH-------------------------HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH
Confidence            22222                         22346899999999999999999999999998654332233579999999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhCCh--h-hhhHhhHHHHHHhccc
Q psy14015        244 LAQDEQDSVRLLAVEACVSIASLLSQ--S-DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       244 ll~D~~~~VR~aa~~~l~~l~~~l~~--~-~~~~~l~p~l~~ll~D  286 (318)
                      +++++++.||..++.++..++..-..  . -.....+|.++.++.+
T Consensus       271 lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~  316 (644)
T 2z6h_A          271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR  316 (644)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999863111  1 1123478899999886

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.10  E-value=4.6e-09  Score=103.29  Aligned_cols=276  Identities=8%  Similarity=0.018  Sum_probs=174.8

Q ss_pred             hHHHHHHH---hcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchh
Q psy14015         14 PIAVLIDE---LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVH   89 (318)
Q Consensus        14 ~i~~l~~~---l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~   89 (318)
                      .+..++..   +++.+..+..++++.+..+..  .+ .......+.+..++.+.+. +|..+...|..++..  .+...+
T Consensus       275 ~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~-~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~  349 (618)
T 1w63_A          275 ILAQVATNTETSKNVGNAILYETVLTIMDIKS--ES-GLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQ  349 (618)
T ss_dssp             HHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CH-HHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHG
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHhcCC--CH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHH
Confidence            35555543   345566778888888776521  12 1233455566666665554 888888888888652  223334


Q ss_pred             ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR  169 (318)
Q Consensus        90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~  169 (318)
                      ...+.+...+.|++..||..|++.+..+++.-+-+.    +++.+.+++.+.+..+|..++..++.++.+.+... .+..
T Consensus       350 ~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-~~~v  424 (618)
T 1w63_A          350 RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-RWHI  424 (618)
T ss_dssp             GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-HHHH
T ss_pred             HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-HHHH
Confidence            445566666778888888888888888877544332    44555555556667788888888888877664332 3333


Q ss_pred             HHHHhhccCCCcccccchh-------hcCccchHHHHHHHHHhhcC--CCHHHHHHHHHhhHHHHHHhchh---------
Q psy14015        170 SHFRNLCQDDTPMQQGHVW-------ECGSGVKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEVD---------  231 (318)
Q Consensus       170 ~~~~~l~~~~~~~vR~~v~-------~~~~~~~~~ll~~l~~l~~D--~~~~VR~~aa~~L~~l~~~~~~~---------  231 (318)
                      ..+.++.++.+..|+..++       .-.+..+...++.+..++.+  ....+.+.+++.+|+++..+...         
T Consensus       425 ~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~  504 (618)
T 1w63_A          425 DTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQ  504 (618)
T ss_dssp             HHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccC
Confidence            4444444444433333211       11234556667777766664  23445557999999999865320         


Q ss_pred             hhHhhHHHHHHHhhc--CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        232 YLKTDIIPMFVNLAQ--DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       232 ~~~~~llp~l~~ll~--D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      .....+++.+..+++  +.+..||..++.++..++..++..  .+.+...+..+..|          .+++||-.+..-.
T Consensus       505 ~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~----------~d~evrdRA~~y~  572 (618)
T 1w63_A          505 VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSS----------IDVELQQRAVEYN  572 (618)
T ss_dssp             CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTC----------SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCC----------CCHHHHHHHHHHH
Confidence            112357777888776  678999999999999999877542  45566667777777          8999999888654


Q ss_pred             hh
Q psy14015        310 TL  311 (318)
Q Consensus       310 ~~  311 (318)
                      .|
T Consensus       573 ~l  574 (618)
T 1w63_A          573 AL  574 (618)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.09  E-value=8.6e-12  Score=97.87  Aligned_cols=120  Identities=19%  Similarity=0.164  Sum_probs=82.9

Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL  168 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l  168 (318)
                      ..-.+.+..+++|+++.||..|+.+|..+...        . +|.+.++++|+++.+|..|+..++.+.           
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~-----------   70 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQ-----------   70 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGC-----------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcC-----------
Confidence            33556677777888888888888777655321        1 366777788888888888888877542           


Q ss_pred             HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015        169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE  248 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~  248 (318)
                                                ....++.+..+++|+++.||..++.+|+.++.        ...+|.+..+++|+
T Consensus        71 --------------------------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~  116 (131)
T 1te4_A           71 --------------------------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETG  116 (131)
T ss_dssp             --------------------------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSC
T ss_pred             --------------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCC
Confidence                                      13346778888889999999999999988752        34678888888899


Q ss_pred             cHHHHHHHHHHHHH
Q psy14015        249 QDSVRLLAVEACVS  262 (318)
Q Consensus       249 ~~~VR~aa~~~l~~  262 (318)
                      ++.||..++.+|+.
T Consensus       117 ~~~vr~~A~~aL~~  130 (131)
T 1te4_A          117 TGFARKVAVNYLET  130 (131)
T ss_dssp             CTHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999988887653

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.03  E-value=2.5e-09  Score=90.82  Aligned_cols=129  Identities=15%  Similarity=0.098  Sum_probs=104.6

Q ss_pred             hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH-hh
Q psy14015        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN-LC  206 (318)
Q Consensus       128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~-l~  206 (318)
                      +.+++....|.+++...+|..|+.+++.. .  .                                 ...+++.+.. +.
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~---------------------------------~~~~L~~ir~~va  113 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K---------------------------------DKEILIFMRDEVS  113 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T---------------------------------SHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C---------------------------------cHHHHHHHHHHhC
Confidence            34888899999999999999999988754 1  0                                 1456888887 89


Q ss_pred             cCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       207 ~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      +|++|.||..++.+++.++...+++    ..++.+...++|++.+||+++.+.+-..+.........+.++|.+..+..|
T Consensus       114 ~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D  189 (240)
T 3l9t_A          114 KDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKED  189 (240)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTC
T ss_pred             CCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCC
Confidence            9999999999999999999866664    377889999999999999999988765554322233446699999999999


Q ss_pred             cccccccCCCCCCchhhHHh
Q psy14015        287 IVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       287 ~~~~~~~~~~~~~~Vr~~~i  306 (318)
                                +...||-.|.
T Consensus       190 ----------~s~yVrKSVa  199 (240)
T 3l9t_A          190 ----------VSEYVRKSVG  199 (240)
T ss_dssp             ----------SCHHHHHHHH
T ss_pred             ----------hHHHHHHHHH
Confidence                      8888887776

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.98  E-value=1.3e-08  Score=103.68  Aligned_cols=260  Identities=12%  Similarity=0.139  Sum_probs=183.6

Q ss_pred             CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHh-hChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcc-cch
Q psy14015         11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGP-EYV   88 (318)
Q Consensus        11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~-~~~   88 (318)
                      ++..+..++..+...+...|..++..+...... .+.......++..+.+.+.|...- ..++..+..++...|.. ...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTH
T ss_pred             hHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcc
Confidence            445566677777765667788888888887442 111112235777777777775433 77778888888766542 222


Q ss_pred             hc---cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcch
Q psy14015         89 HC---LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        89 ~~---llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      .+   ++|.+.....|....||.+|..+...++..++++.+ ..++|.+.+.+.+. .|..+..|..+++.+....+..+
T Consensus        91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            22   567777788899999999999999999999999877 55888887766544 59999999999988765443222


Q ss_pred             HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-------------
Q psy14015        165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-------------  231 (318)
Q Consensus       165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-------------  231 (318)
                      ...+                           .+++|.+...+.|-.++|.+++..++.+++..++..             
T Consensus       170 ~~~~---------------------------~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~  222 (986)
T 2iw3_A          170 ALRM---------------------------PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI  222 (986)
T ss_dssp             HHHH---------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH
T ss_pred             HHhc---------------------------cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh
Confidence            2222                           667899999999999999999999888888766431             


Q ss_pred             ------------------------hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHh
Q psy14015        232 ------------------------YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQC  283 (318)
Q Consensus       232 ------------------------~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~l  283 (318)
                                              ....-+.|.+.+.+++++-.+++.++-.+.++++.+......    ..|+|.+.+.
T Consensus       223 ~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~  302 (986)
T 2iw3_A          223 ADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN  302 (986)
T ss_dssp             HCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH
T ss_pred             cChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH
Confidence                                    123467888888888888888888888888999888664433    3345544443


Q ss_pred             ccccccccccCCCCCCchhhHHhhh
Q psy14015        284 SVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       284 l~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ..         ...+|+||-..-++
T Consensus       303 ~~---------~~~~pe~r~~~~~a  318 (986)
T 2iw3_A          303 FA---------TIADPEAREVTLRA  318 (986)
T ss_dssp             TT---------TCCSHHHHHHHHHH
T ss_pred             hh---------ccCCHHHHHHHHHH
Confidence            33         34688888766543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.97  E-value=2.7e-08  Score=91.09  Aligned_cols=218  Identities=12%  Similarity=0.088  Sum_probs=150.1

Q ss_pred             cHHHHHHHHHhHHHHHHhhChHh----H--hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-----hhccch
Q psy14015         26 DVQLRLNSIKKLSTIALALGQER----T--RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-----VHCLLP   93 (318)
Q Consensus        26 ~~~~R~~~~~~L~~ia~~lg~~~----~--~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-----~~~llp   93 (318)
                      ++.++..++..|..++.  +.+.    .  ..-.+|.|.+++..+++ ++..++..|..++..- .+..     ....+|
T Consensus        97 ~~~~q~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~k~~i~~~G~Ip  173 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSVK  173 (354)
T ss_dssp             HHHHHHHHHHHHHHHTS--SCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC-CHHHHHHHHHCCCHH
Confidence            45678888888888863  2221    1  12458999998877655 9999999999987521 1111     123567


Q ss_pred             HHhhh-ccCchhHHHHHHHHHHHHHHhhCCh--hHH--hhhHHHHHHHhhcCCCc----hhhhhhhhhhhhhcccc--Cc
Q psy14015         94 PLESL-ATVEETVVRDKAVESLRLISAQHSP--HDL--EAHFVPLVQRLASGDWF----TSRTSACGLFSVCYPRV--TA  162 (318)
Q Consensus        94 ~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~--~~~--~~~ilp~~~~l~~d~~~----~vR~~a~~~l~~~~~~~--~~  162 (318)
                      .|..+ ....+..+++.|+.+|..++...+.  ..+  ..-.+|.+.+++.++..    .++..|+..|..+...+  .+
T Consensus       174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~  253 (354)
T 3nmw_A          174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE  253 (354)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence            77775 5666788999999999999874422  222  23478888888876533    47777877776554321  12


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH-hc-hhh-hHhhHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV-VE-VDY-LKTDIIP  239 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~-~~-~~~-~~~~llp  239 (318)
                      ..+..+                         .....+|.+.+++.+.+..+++.|+.+|..++.. -. ... ...-.+|
T Consensus       254 ~~~~~i-------------------------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~  308 (354)
T 3nmw_A          254 DHRQIL-------------------------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS  308 (354)
T ss_dssp             HHHHHH-------------------------HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHH
T ss_pred             HHHHHH-------------------------HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH
Confidence            222221                         2234689999999999999999999999999831 11 111 2234799


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  271 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~  271 (318)
                      .+..++++++..+|..++.+|.+++..-+...
T Consensus       309 ~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999998754443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.95  E-value=4e-08  Score=99.07  Aligned_cols=204  Identities=17%  Similarity=0.116  Sum_probs=135.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      +..++..+.+++...|..++-.|+.+-.--|.....+.|+.++.   ++.++ +|+.++..|+.+.  +|.++.   +-+
T Consensus       474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e~---~~~  545 (963)
T 4ady_A          474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQEL---ADD  545 (963)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGGG---GHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChHH---HHH
Confidence            45667777778877887888887776322233334445554443   45455 9999999999763  455443   334


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                      ++..|..++++.+|..++.++.--.--.+....   +-.++..+.+|.+..+|..|+..+|.+..+-.            
T Consensus       546 li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------  610 (963)
T 4ady_A          546 LITKMLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------  610 (963)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------
Confidence            455566688999999988776532222222221   22234445567778899999888886532211            


Q ss_pred             hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHH
Q psy14015        174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR  253 (318)
Q Consensus       174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR  253 (318)
                                            +...+.+..+.++.++.||+.++.+||.++..-|.    ..++..+..+++|++..||
T Consensus       611 ----------------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vr  664 (963)
T 4ady_A          611 ----------------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVR  664 (963)
T ss_dssp             ----------------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHH
T ss_pred             ----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHH
Confidence                                  11223333466789999999999999988743232    4688899999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q psy14015        254 LLAVEACVSIASLL  267 (318)
Q Consensus       254 ~aa~~~l~~l~~~l  267 (318)
                      ++|+.+++.+...-
T Consensus       665 q~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          665 QAAMIALSMILIQQ  678 (963)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999888543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.92  E-value=2.5e-08  Score=98.13  Aligned_cols=235  Identities=11%  Similarity=0.074  Sum_probs=150.2

Q ss_pred             hhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhc--cCchhHHHHHHHHHHHHHHhhCChhHHh-hh
Q psy14015         54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA--TVEETVVRDKAVESLRLISAQHSPHDLE-AH  129 (318)
Q Consensus        54 lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~--~d~~~~VR~~a~~~l~~l~~~~~~~~~~-~~  129 (318)
                      +..+.+=++|+++ +|..|.+.|+.+.    .++..+.+.|.+..++  .|.++.||.+|+.++..+....+ +.+. +.
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~  187 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVG----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGD  187 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCS
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchh
Confidence            3444444456667 9999999999874    3667788999999998  99999999999999999998643 3333 25


Q ss_pred             HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc---hHHHHHHHHHhhccC--C-----------Ccccccchh----h
Q psy14015        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG---VKAELRSHFRNLCQD--D-----------TPMQQGHVW----E  189 (318)
Q Consensus       130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~l~~~~~~l~~~--~-----------~~~vR~~v~----~  189 (318)
                      +.+.+.++++|++..|+.+|+.++..++..-...   .-..+...+..+...  .           +|+.+-++.    .
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~  267 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC  267 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence            8888999999999999999999988776532221   111122223333211  1           222221111    1


Q ss_pred             cCc----cchHHHHHHHHHhh---cC-C--------CH--HHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015        190 CGS----GVKAELRSHFRNLC---QD-D--------TP--MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS  251 (318)
Q Consensus       190 ~~~----~~~~~ll~~l~~l~---~D-~--------~~--~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~  251 (318)
                      +++    ...+.+.+.+..++   .| +        +.  .|-..|+..+..+.   ............+..++.+++..
T Consensus       268 ~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~n  344 (621)
T 2vgl_A          268 YPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETN  344 (621)
T ss_dssp             SSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcc
Confidence            111    12233333333322   22 1        22  45555555554442   12233456778888999999999


Q ss_pred             HHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc-ccccccccCCCCCCchhhHHh
Q psy14015        252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV-QIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       252 VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~-D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      +|-.++.++..++..-+.....+...+.++.+++ |          +++.||...+
T Consensus       345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d----------~d~~Ir~~aL  390 (621)
T 2vgl_A          345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTE----------RDVSVRQRAV  390 (621)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTC----------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccC----------CCHhHHHHHH
Confidence            9999999999998665422333455778888888 8          7888876655

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.91  E-value=5e-08  Score=92.43  Aligned_cols=254  Identities=12%  Similarity=0.058  Sum_probs=161.0

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc--
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY--   87 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~--   87 (318)
                      -|+.+...|+++++.++..++..|..++..-.+   .-.....+|.|.+++..+++ ++..++..|..++..  .+..  
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHH
Confidence            367888999999999999999999998732111   11234568999999887666 999999999999862  1222  


Q ss_pred             ---hhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCCh-hHHhhhHHHHHHHhh--------cCCC--------chhh
Q psy14015         88 ---VHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSP-HDLEAHFVPLVQRLA--------SGDW--------FTSR  146 (318)
Q Consensus        88 ---~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~ilp~~~~l~--------~d~~--------~~vR  146 (318)
                         ....+|.|.+++. +.+..+++.|+.+|..++..-.. ..+.+-.+|.+.+++        .++.        ..+.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence               2336788888888 77899999999999999976221 223336788888877        2222        2333


Q ss_pred             hhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccch-HHHHHHHHHhhcC------CCHHHHHHHHH
Q psy14015        147 TSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK-AELRSHFRNLCQD------DTPMVRRAAAG  219 (318)
Q Consensus       147 ~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~-~~ll~~l~~l~~D------~~~~VR~~aa~  219 (318)
                      ..|++.|..+...  +..+..+                         .. +..+|.+..++++      .+..+...++.
T Consensus       161 ~~a~~aL~nLs~~--~~~~~~i-------------------------~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~  213 (457)
T 1xm9_A          161 FNATGCLRNLSSA--DAGRQTM-------------------------RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC  213 (457)
T ss_dssp             HHHHHHHHHHTTS--HHHHHHH-------------------------TTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHccC--HHHHHHH-------------------------HHcCCCHHHHHHHHHhhccccCCchHHHHHHHH
Confidence            4666666655433  2222221                         11 1355666655542      33344444444


Q ss_pred             hhHHHHH----------------------------Hh------------------------chhhh-HhhHHHHHHHhhc
Q psy14015        220 KLGELAK----------------------------VV------------------------EVDYL-KTDIIPMFVNLAQ  246 (318)
Q Consensus       220 ~L~~l~~----------------------------~~------------------------~~~~~-~~~llp~l~~ll~  246 (318)
                      .|..++.                            .+                        |.+.+ ....+|.+..+++
T Consensus       214 ~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~  293 (457)
T 1xm9_A          214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG  293 (457)
T ss_dssp             HHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred             HHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence            3433320                            00                        11222 2346777777776


Q ss_pred             CC-cHHHHHHHHHHHHHHHhhCChh-------hh-hHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        247 DE-QDSVRLLAVEACVSIASLLSQS-------DV-EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       247 D~-~~~VR~aa~~~l~~l~~~l~~~-------~~-~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ++ +..++..++.+|.+++..-++.       .+ ....+|.+.++|.+          .+.+|+..++
T Consensus       294 ~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~----------~~~~v~~~A~  352 (457)
T 1xm9_A          294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS----------GNSDVVRSGA  352 (457)
T ss_dssp             HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC----------SCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC----------CCHhHHHHHH
Confidence            54 6899999999999998543321       11 23588999999999          6777776665

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.3e-08  Score=90.03  Aligned_cols=193  Identities=13%  Similarity=0.066  Sum_probs=130.5

Q ss_pred             CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh----Hh---HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCc
Q psy14015         11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ----ER---TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNV   82 (318)
Q Consensus        11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~----~~---~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~   82 (318)
                      .+..++ +.+.+.|.+|+.|..+++.|..+......    +.   ....+.+.+...+.|.+. |...++..+..++..+
T Consensus         8 d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~   86 (278)
T 4ffb_C            8 DYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAF   86 (278)
T ss_dssp             ---CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence            344444 56899999999999999999887543221    11   123456778888889887 8888889998888766


Q ss_pred             Cccc--------chhccchHHh-hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhh
Q psy14015         83 GGPE--------YVHCLLPPLE-SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF  153 (318)
Q Consensus        83 ~~~~--------~~~~llp~l~-~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l  153 (318)
                      |...        ....++|.+. ..+.|....+|..|.+++..++......   ..+++.+...++..++.+|..++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C           87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            5321        2244566554 4578889999999999999998765431   12445556677889999999988888


Q ss_pred             hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh
Q psy14015        154 SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD  231 (318)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~  231 (318)
                      ..++..++...              .++.          ...+.+++.+..++.|.++.||.+|...++.+-..+|+.
T Consensus       164 ~~~l~~fg~~~--------------~~~k----------~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          164 YELMAAFGLTN--------------VNVQ----------TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHHHHHHTTTT--------------CCHH----------HHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHhCCCc--------------CCch----------hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            76654332110              0000          012446677888899999999999999999999888853

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.3e-07  Score=83.41  Aligned_cols=184  Identities=16%  Similarity=0.141  Sum_probs=130.3

Q ss_pred             hhhhhhhcCChHH-HHHHHHHHHcccccCcCc----cc---chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh-
Q psy14015         54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----PE---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH-  124 (318)
Q Consensus        54 lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~~---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-  124 (318)
                      +| +.+-+.+..| .|..+.+.|..+......    ..   ....+.+.+...+.|.+..|...+++++..++..++.. 
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            67 4567778999 999999998876543211    11   12346678888889999999999999999999876542 


Q ss_pred             -------HHhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchH
Q psy14015        125 -------DLEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKA  196 (318)
Q Consensus       125 -------~~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~  196 (318)
                             .....++|.+.. .+.|....+|..+...+-.++.                   ...             ...
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~-------------------~~~-------------~~~  138 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG-------------------LDT-------------SIT  138 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-------------------TSS-------------SSH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-------------------hcC-------------cHH
Confidence                   123346666654 3566666677666554432221                   111             124


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       197 ~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      .+++.+...++..+|.+|..++..|..+...+|...     ....+++.+..++.|++..||.++...+..+...+|+.
T Consensus       139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            567788888999999999999999999999888643     23457778888999999999999999999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.82  E-value=1.3e-07  Score=84.36  Aligned_cols=168  Identities=16%  Similarity=0.146  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHHHHHhhCChh-HH-hhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015        104 TVVRDKAVESLRLISAQHSPH-DL-EAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT  180 (318)
Q Consensus       104 ~~VR~~a~~~l~~l~~~~~~~-~~-~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~  180 (318)
                      ..-|..|+..|..+++..... .+ ..-.+|.+.. ++++++..+|..|+..++.+...- +..+..+            
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~v------------  120 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQV------------  120 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHH------------
Confidence            356777888888888754321 11 2236777777 899999999999999999876432 1122222            


Q ss_pred             cccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhc--hhhh-HhhHHHHHHHhhcCCcHHHHHHH
Q psy14015        181 PMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVE--VDYL-KTDIIPMFVNLAQDEQDSVRLLA  256 (318)
Q Consensus       181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~--~~~~-~~~llp~l~~ll~D~~~~VR~aa  256 (318)
                                   .....+|.++++++ +++..+|+.|+++|+.++....  .+.+ ....+|.+..++++++..||..+
T Consensus       121 -------------v~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A  187 (296)
T 1xqr_A          121 -------------LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS  187 (296)
T ss_dssp             -------------HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             -------------HHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence                         22356899999988 5689999999999999985432  2222 34689999999999999999999


Q ss_pred             HHHHHHHHhhCChhh----hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        257 VEACVSIASLLSQSD----VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       257 ~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      +.+|..++.. +++.    ...-++|.|..+|..          +++.|+..+...
T Consensus       188 ~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~----------~d~~v~~~al~a  232 (296)
T 1xqr_A          188 AFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRT----------EHSPFHEHVLGA  232 (296)
T ss_dssp             HHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTS----------CCSTHHHHHHHH
T ss_pred             HHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcC----------CChhHHHHHHHH
Confidence            9999999876 3332    234589999999999          777777766643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.78  E-value=2.7e-07  Score=87.19  Aligned_cols=214  Identities=12%  Similarity=0.097  Sum_probs=146.7

Q ss_pred             cHHHHHHHHHhHHHHHHhhChHh----H--hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-----hhccch
Q psy14015         26 DVQLRLNSIKKLSTIALALGQER----T--RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-----VHCLLP   93 (318)
Q Consensus        26 ~~~~R~~~~~~L~~ia~~lg~~~----~--~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-----~~~llp   93 (318)
                      ++.++..++..|..++.  +.+.    .  ....+|.|.+++..+++ ++..++..|..++..- .+..     ....+|
T Consensus       213 ~~~l~~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~k~~I~~~GaI~  289 (458)
T 3nmz_A          213 SITLRRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSVK  289 (458)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHhC--CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CHHHHHHHHHcCCHH
Confidence            35567777777777763  2221    1  13458999998877555 9999999999886421 1111     123567


Q ss_pred             HHhhh-ccCchhHHHHHHHHHHHHHHhhCCh--hHH--hhhHHHHHHHhhcCCCc----hhhhhhhhhhhhhcccc--Cc
Q psy14015         94 PLESL-ATVEETVVRDKAVESLRLISAQHSP--HDL--EAHFVPLVQRLASGDWF----TSRTSACGLFSVCYPRV--TA  162 (318)
Q Consensus        94 ~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~--~~~--~~~ilp~~~~l~~d~~~----~vR~~a~~~l~~~~~~~--~~  162 (318)
                      .|..+ ....+..+++.|+.++..++.....  ..+  ..-.+|.+.+++.++..    .++..|+..|..+...+  .+
T Consensus       290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~  369 (458)
T 3nmz_A          290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE  369 (458)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence            77775 5556788999999999999875432  222  23478888888876532    47777877776654321  12


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH-hc-hh-hhHhhHHH
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV-VE-VD-YLKTDIIP  239 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~-~~-~~-~~~~~llp  239 (318)
                      ..+..+                         .....+|.+.+++.+.+..+++.|+.+|+.++.. -. .. ....-.+|
T Consensus       370 ~~~~~i-------------------------~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~  424 (458)
T 3nmz_A          370 DHRQIL-------------------------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS  424 (458)
T ss_dssp             HHHHHH-------------------------HHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHH
T ss_pred             HHHHHH-------------------------HHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            222222                         2234689999999999999999999999999831 11 11 12334799


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      .+..+++..+..+|..++.+|.+++..-
T Consensus       425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          425 MLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.78  E-value=3.2e-07  Score=83.91  Aligned_cols=240  Identities=10%  Similarity=0.055  Sum_probs=156.5

Q ss_pred             HHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcC----------C-hHH-HHHHHHHHHcccccCcCcc-c-c--h
Q psy14015         29 LRLNSIKKLSTIALALGQER----TRGELIPFLTETIY----------D-EDE-VLLALAEQLGTFTPNVGGP-E-Y--V   88 (318)
Q Consensus        29 ~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~----------D-~~~-VR~~aa~~L~~l~~~~~~~-~-~--~   88 (318)
                      ....++..|..++-.  ++.    .....+|.|..++.          + ... ++..++..|..++..-... . .  .
T Consensus        48 ~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           48 QICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             THHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            344667777776522  110    11234555555552          2 234 9999999999998521111 1 1  1


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHh-hhHHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLE-AHFVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~-~~ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ...+|.|..++.++++.+++.|+.+|..++..-+.   ..+. .-.+|.+.++ ..+.+..++..|+..+..+.... +.
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~~  204 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-TE  204 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-hh
Confidence            23589999999999999999999999999864222   2222 2367777775 56666778888777776553311 11


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCH----HHHHHHHHhhHHHHHHh--chh---hh-
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP----MVRRAAAGKLGELAKVV--EVD---YL-  233 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~----~VR~~aa~~L~~l~~~~--~~~---~~-  233 (318)
                      .+..+       +                 .....+|.+.+++.++..    .+++.++.+|..++..+  +++   .+ 
T Consensus       205 nk~~i-------~-----------------~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~  260 (354)
T 3nmw_A          205 NKADI-------C-----------------AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR  260 (354)
T ss_dssp             HHHHH-------H-----------------HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHH-------H-----------------HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            22221       0                 024568999999987654    69999999999988632  122   12 


Q ss_pred             HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ....+|.+..++++++..++..++.+|.+++.. .++..    ..-.+|.|..++.+          .++.+|.++.
T Consensus       261 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s----------~~~~i~~~A~  326 (354)
T 3nmw_A          261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHS----------KHKMIAMGSA  326 (354)
T ss_dssp             TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTC----------SSHHHHHHHH
T ss_pred             HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHH
Confidence            224789999999999999999999999999742 22221    12378999999998          6777776554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.75  E-value=1.4e-07  Score=84.26  Aligned_cols=173  Identities=14%  Similarity=0.037  Sum_probs=124.6

Q ss_pred             HHHHHHHHHcccccCcCcc--cchhccchHHhh-hccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhc-
Q psy14015         67 VLLALAEQLGTFTPNVGGP--EYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLAS-  139 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~-  139 (318)
                      -|..++..|..++......  ......+|.+.. ++.++++.||..|+.++..++..-+.  .. +..-.+|.+.++++ 
T Consensus        56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~  135 (296)
T 1xqr_A           56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  135 (296)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            5566666666666532110  111224566767 88999999999999999999875432  12 22347788888877 


Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG  219 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~  219 (318)
                      +++..+|..|++.++.++..... ....+                         .....+|.+..++++++..+|+.++.
T Consensus       136 ~~~~~v~~~A~~ALsnl~~~~~~-~~~~~-------------------------~~~ggi~~L~~lL~~~d~~v~~~A~~  189 (296)
T 1xqr_A          136 DACDTVRVKALFAISCLVREQEA-GLLQF-------------------------LRLDGFSVLMRAMQQQVQKLKVKSAF  189 (296)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHH-HHHHH-------------------------HHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcH-HHHHH-------------------------HHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence            45778999999999877643221 11111                         12346899999999999999999999


Q ss_pred             hhHHHHHHhchh----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        220 KLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       220 ~L~~l~~~~~~~----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      +|+.++.. +++    .+...++|.+..++++++..||..++.+++.++..
T Consensus       190 aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          190 LLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999875 222    22345899999999999999999999999999976

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=98.75  E-value=6.7e-07  Score=86.71  Aligned_cols=257  Identities=12%  Similarity=0.123  Sum_probs=163.1

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--Hh-HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc--
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ER-TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY--   87 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~-~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~--   87 (318)
                      .|+.++..|++.+..++..++..|..++..-.+  .. ...-.+|.|.+++...++ |+..++..|..++..-+ +..  
T Consensus        49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~-~~nk~  127 (584)
T 3l6x_A           49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD-QDNKI  127 (584)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC-HHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC-HHHHH
Confidence            388999999999999999999999888742111  11 223468999999887666 99999999999975211 111  


Q ss_pred             ---hhccchHHhhhccC-chhHHHHHHHHHHHHHHhhCC-hhHHhhhHHHHHHHhhc------------------CCCch
Q psy14015         88 ---VHCLLPPLESLATV-EETVVRDKAVESLRLISAQHS-PHDLEAHFVPLVQRLAS------------------GDWFT  144 (318)
Q Consensus        88 ---~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~-~~~~~~~ilp~~~~l~~------------------d~~~~  144 (318)
                         ....+|.|..++.+ .+..+++.|+.+|..++..-. +..+....+|.+.+++-                  .++..
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~  207 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES  207 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence               12356778888775 577899999999999987321 12233334666666541                  12346


Q ss_pred             hhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc------CCCHHHHHHHH
Q psy14015        145 SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ------DDTPMVRRAAA  218 (318)
Q Consensus       145 vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~------D~~~~VR~~aa  218 (318)
                      ++..|+..|..+... .+..+..+.+                        ..-+++.+..+++      +.+....+.|+
T Consensus       208 V~~nAa~~L~NLs~~-~~~~R~~i~~------------------------~~Gli~~LV~~L~~~~~~~~~~~~~~enav  262 (584)
T 3l6x_A          208 VLTNTAGCLRNVSSE-RSEARRKLRE------------------------CDGLVDALIFIVQAEIGQKDSDSKLVENCV  262 (584)
T ss_dssp             HHHHHHHHHHHHTSS-CHHHHHHHHH------------------------STTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHH------------------------cCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence            777777777655321 1112222210                        0223455555443      34566777777


Q ss_pred             HhhHHHHHHh---------------------------chhhhH-hhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCCh
Q psy14015        219 GKLGELAKVV---------------------------EVDYLK-TDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       219 ~~L~~l~~~~---------------------------~~~~~~-~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      ..|..++...                           |.++++ ...++.+..+++ ..++.++..++.+|..++..-++
T Consensus       263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~  342 (584)
T 3l6x_A          263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT  342 (584)
T ss_dssp             HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence            7776665332                           112222 246777777775 45789999999999999853222


Q ss_pred             hh-------hhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        270 SD-------VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       270 ~~-------~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      ..       .....+|.|..+|..          +++.|+..++
T Consensus       343 ~~~~~~~~v~~~~glp~Lv~LL~s----------~~~~v~~~A~  376 (584)
T 3l6x_A          343 YGRYIRSALRQEKALSAIADLLTN----------EHERVVKAAS  376 (584)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHGGGC----------SCHHHHHHHH
T ss_pred             ccHHHHHHHHHcCcHHHHHHHHcC----------CCHHHHHHHH
Confidence            11       124579999999999          6666666655

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.69  E-value=4.5e-08  Score=89.15  Aligned_cols=241  Identities=12%  Similarity=0.115  Sum_probs=125.2

Q ss_pred             CCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc
Q psy14015          8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE   86 (318)
Q Consensus         8 ~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~   86 (318)
                      ++|-+.-+..+.+.++++|+.+|-.+++.|+.|.   .++ ..+.+.+.+.+.+.|.++ ||++|+-...++.+.  .++
T Consensus        99 ~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~---~~~-m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe  172 (355)
T 3tjz_B           99 AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT---DST-MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD  172 (355)
T ss_dssp             SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC---CTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH
T ss_pred             HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC---CHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH
Confidence            7888999999999999999999999999999983   333 667889999999999988 999999988887653  345


Q ss_pred             chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (318)
Q Consensus        87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~  166 (318)
                      ..+.++..+..++.|.++.|-..|+..+..+.+.- .. ....+++.   +..+. ...-++-+.++             
T Consensus       173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~-a~~kLv~~---l~~~~-l~~~~~q~~ll-------------  233 (355)
T 3tjz_B          173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RL-AVSKMISK---FTRHG-LKSPFAYCMMI-------------  233 (355)
T ss_dssp             HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HH-HHHHHHHH---HHSSC-CSCHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hH-HHHHHHHH---HhcCC-CcChHHHHHHH-------------
Confidence            56778889999999999999888888888887542 11 12223333   32221 00001111111             


Q ss_pred             HHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015        167 ELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ  246 (318)
Q Consensus       167 ~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~  246 (318)
                         .....++....+           ...+.+++.+...++..++.|-..|++.+..+... +.. ......+.+..+++
T Consensus       234 ---r~l~~~~~~d~~-----------~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~~fLs  297 (355)
T 3tjz_B          234 ---RVASRQLEDEDG-----------SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQLFCS  297 (355)
T ss_dssp             ---HHHTCC----------------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHH
T ss_pred             ---HHHHHhccccch-----------hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHc
Confidence               111122222111           12244555566666666666666666666665442 111 12333445555555


Q ss_pred             CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccccc
Q psy14015        247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHK  291 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~  291 (318)
                      .+++.+|-+++..+..+...-+.. .. ..-..+..+++|++...
T Consensus       298 s~d~niryvaLr~L~~l~~~~P~~-v~-~~n~~ie~li~d~n~sI  340 (355)
T 3tjz_B          298 SPKAALRYAAVRTLNKVAMKHPSA-VT-ACNLDLENLVTDANRSI  340 (355)
T ss_dssp             SSSSSSHHHHHHCC-------------------------------
T ss_pred             CCCchHHHHHHHHHHHHHHHCcHH-HH-HHHHHHHHHccCCcHhH
Confidence            566666666666666666543332 11 12233556666655443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.69  E-value=8e-07  Score=77.50  Aligned_cols=74  Identities=8%  Similarity=0.034  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHH---HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII---PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  271 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~ll---p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~  271 (318)
                      ..+.+.+.+.+++.+|++|..++..++.+.+..|...  ...+   |.+.+++.|++..||.+|..++..+-...|...
T Consensus       166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            3455666666677777777777777777777777542  3455   777777777777777777777777777666653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.62  E-value=1.1e-06  Score=83.09  Aligned_cols=270  Identities=15%  Similarity=0.110  Sum_probs=162.9

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCc-ccc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGG-PEY   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~-~~~   87 (318)
                      |+.+.+.|+++++.++..++..|..++.. .++.    ...-.+|.|.+++. ..++ ++..++..|..++..-.. ...
T Consensus        46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i  124 (457)
T 1xm9_A           46 ICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL  124 (457)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence            78899999999999999999999999752 1221    12345889989887 5455 999999999999864111 112


Q ss_pred             hhccchHHhhhc--------cCc--------hhHHHHHHHHHHHHHHhhCCh--hHHhh--hHHHHHHHhhcC------C
Q psy14015         88 VHCLLPPLESLA--------TVE--------ETVVRDKAVESLRLISAQHSP--HDLEA--HFVPLVQRLASG------D  141 (318)
Q Consensus        88 ~~~llp~l~~l~--------~d~--------~~~VR~~a~~~l~~l~~~~~~--~~~~~--~ilp~~~~l~~d------~  141 (318)
                      .+..+|.|..++        .++        +..|...|+.+|..++.. +.  ..+.+  -.+|.+..++++      .
T Consensus       125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  203 (457)
T 1xm9_A          125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRC  203 (457)
T ss_dssp             HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred             HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence            225677777777        222        345566899999999875 22  12222  366767666553      2


Q ss_pred             CchhhhhhhhhhhhhccccCcc--hHHH--------------HHHHHHhhcc------CCCcc---cccchhhcCccchH
Q psy14015        142 WFTSRTSACGLFSVCYPRVTAG--VKAE--------------LRSHFRNLCQ------DDTPM---QQGHVWECGSGVKA  196 (318)
Q Consensus       142 ~~~vR~~a~~~l~~~~~~~~~~--~~~~--------------l~~~~~~l~~------~~~~~---vR~~v~~~~~~~~~  196 (318)
                      +..+...++..+..+..+....  ....              ....|.....      ...|.   ++. .......+..
T Consensus       204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~  282 (457)
T 1xm9_A          204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN-PKGSGWLYHS  282 (457)
T ss_dssp             TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSS-CCGGGGGGSH
T ss_pred             chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccC-chHHHHHhCc
Confidence            3344444544444432111000  0000              0000100000      00000   000 0000012346


Q ss_pred             HHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhch-------hhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        197 ELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV-------DYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       197 ~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~-------~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      ..++.+..++++ +++.++..++.+|+.++..-++       ..+ ....+|.+.+++++++..||..++.++..++..-
T Consensus       283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence            678888888875 4699999999999999752211       112 1357899999999999999999999999998632


Q ss_pred             Ch-hhhhHhhHHHHHHhcccc
Q psy14015        268 SQ-SDVEQLVMPTLRQCSVQI  287 (318)
Q Consensus       268 ~~-~~~~~~l~p~l~~ll~D~  287 (318)
                      .- .......+|.|+.+|...
T Consensus       363 ~~~~~i~~~~i~~Lv~lL~~~  383 (457)
T 1xm9_A          363 LLHRVMGNQVFPEVTRLLTSH  383 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSC
T ss_pred             HHHHHHHHhhhHHHHHhccCC
Confidence            11 122356899999999984

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.57  E-value=1.1e-06  Score=82.91  Aligned_cols=220  Identities=10%  Similarity=0.014  Sum_probs=142.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      -..+...|-++.|++|=.|+-.|.++.+..|...-+.       . ..+.+- +|....-.|.+|+..++++..      
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~-~~N~DLAvRLLCVLALDRFGDYVSDqVV------  241 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------I-RVDSKLFSKIYEILVTDKFNDFVDDRTV------  241 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------C-CCCTTHHHHHHHHHHHBCCBBCSSSSCB------
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------c-cccHHHHHHHHHHHHhccccccccCeee------
Confidence            4577788999999999999999999988766432111       1 112244 888888888888877765433      


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR  173 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~  173 (318)
                                .-||+.|..+|+.+ .+++++  . .++-.+......+.|.+|.++.-.+.-+                .
T Consensus       242 ----------APVRETaAQtLGaL-~hLp~e--~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL----------------~  291 (800)
T 3oc3_A          242 ----------APVRDAAAYLLSRI-YPLIGP--N-DIIEQLVGFLDSGDWQVQFSGLIALGYL----------------K  291 (800)
T ss_dssp             ----------CHHHHHHHHHHHHH-TTTSCS--C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT----------------G
T ss_pred             ----------eehHHHHHHHHHHH-HhCChh--H-HHHHHHHhhcCCCCeeehhhhHHHHHHH----------------H
Confidence                      46899999999999 888776  2 2333333445777899998874333211                0


Q ss_pred             hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcH
Q psy14015        174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~  250 (318)
                      ++..                ....+++.++..++|.+..||..||.+|--++   .++.   +.+.+...+.++ .|=+.
T Consensus       292 DLL~----------------~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~L-DDLSA  351 (800)
T 3oc3_A          292 EFVE----------------DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESE-ELISV  351 (800)
T ss_dssp             GGCC----------------CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTC-CSCCT
T ss_pred             HHHH----------------HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhh-cccch
Confidence            1111                12667899999999999999999999999888   3222   223344444443 33332


Q ss_pred             HHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        251 SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       251 ~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      . =.+.+.-++.++..=........++|.+.+++.-          ..+.||..+.++.
T Consensus       352 S-TgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRH----------tITSVR~AVL~TL  399 (800)
T 3oc3_A          352 S-KTSNLSLLTKIYRENPELSIPPERLKDIFPCFTS----------PVPEVRTSILNMV  399 (800)
T ss_dssp             T-HHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTC----------SSHHHHHHHHHHT
T ss_pred             h-hHHHHHHHHHHHcCCcccccChHHHHHHHhhhcC----------CcHHHHHHHHHHH
Confidence            2 2333344444443221111223789999999999          8899999888653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.54  E-value=4.4e-06  Score=78.90  Aligned_cols=203  Identities=10%  Similarity=0.065  Sum_probs=140.5

Q ss_pred             HHHHHHHHHcccccCcCccc----c--hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHh-hhHHHHHHH
Q psy14015         67 VLLALAEQLGTFTPNVGGPE----Y--VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLE-AHFVPLVQR  136 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~----~--~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~-~~ilp~~~~  136 (318)
                      ++..++..|..++.  +.+.    .  ....+|.|..++.++++.|++.|+.+|..++..-+.   ..+. .-.+|.+.+
T Consensus       216 l~~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~  293 (458)
T 3nmz_A          216 LRRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  293 (458)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence            99999999999985  2221    1  123588999999999999999999999999764222   2222 236777777


Q ss_pred             h-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCH----
Q psy14015        137 L-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP----  211 (318)
Q Consensus       137 l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~----  211 (318)
                      + ..+.+..++..|+..+..+.... +..+..+       +                 .....+|.+.+++.+...    
T Consensus       294 lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~~I-------~-----------------~~~Gal~~Lv~LL~~~~~~~~~  348 (458)
T 3nmz_A          294 CALEVKKESTLKSVLSALWNLSAHC-TENKADI-------C-----------------AVDGALAFLVGTLTYRSQTNTL  348 (458)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHHHHHC-HHHHHHH-------H-----------------HSTTHHHHHHHHTTCCCSSSTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHccCC-HHHHHHH-------H-----------------HhcCcHHHHHHHhcCCCCcchH
Confidence            5 55566778888777776553311 1122221       1                 023468999999886553    


Q ss_pred             HHHHHHHHhhHHHHHHh--chh---h-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHH
Q psy14015        212 MVRRAAAGKLGELAKVV--EVD---Y-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLR  281 (318)
Q Consensus       212 ~VR~~aa~~L~~l~~~~--~~~---~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~  281 (318)
                      .+++.++.+|..++..+  +++   . .....+|.+..++++++..++..++.+|.+++.. +++..    ..-.+|.|.
T Consensus       349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv  427 (458)
T 3nmz_A          349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLK  427 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHH
Confidence            59999999999988631  222   1 1234789999999999999999999999999842 23221    234789999


Q ss_pred             HhccccccccccCCCCCCchhhHHhh
Q psy14015        282 QCSVQIVDHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       282 ~ll~D~~~~~~~~~~~~~~Vr~~~i~  307 (318)
                      .++..          .++.+|..+..
T Consensus       428 ~LL~s----------~~~~v~~~Aa~  443 (458)
T 3nmz_A          428 NLIHS----------KHKMIAMGSAA  443 (458)
T ss_dssp             TTTTC----------SSHHHHHHHHH
T ss_pred             HHHhC----------CCHHHHHHHHH
Confidence            99998          77777766653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.52  E-value=4.4e-06  Score=86.12  Aligned_cols=245  Identities=9%  Similarity=0.036  Sum_probs=153.3

Q ss_pred             CccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC------ChHH-HHHHHHHHHcccccCcC-cc-cchh-----
Q psy14015         24 NEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY------DEDE-VLLALAEQLGTFTPNVG-GP-EYVH-----   89 (318)
Q Consensus        24 ~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~------D~~~-VR~~aa~~L~~l~~~~~-~~-~~~~-----   89 (318)
                      ++....|..+..-|..++...| +.....+++++.+.+.      +++| .|.++...++.++.... .. ....     
T Consensus       372 ~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~  450 (960)
T 1wa5_C          372 SDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (960)
T ss_dssp             ----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             ccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence            3345689999999999998888 4466778888877665      5668 99999999998875321 11 0000     


Q ss_pred             ccchH----HhhhccCc---hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         90 CLLPP----LESLATVE---ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        90 ~llp~----l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .+.+.    +...+.|+   ++.||..|..+++.+++.++++ ....++|.+.+.+.|++..||..|+..|..++.....
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~  529 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence            23232    22234566   8899999999999999988665 3455888888878888899999999988866542210


Q ss_pred             chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC---HH--HHHHHHHhhHHHHHHhchhh-----
Q psy14015        163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT---PM--VRRAAAGKLGELAKVVEVDY-----  232 (318)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~---~~--VR~~aa~~L~~l~~~~~~~~-----  232 (318)
                      .             .+..+..-..  .+ ...-..+++.+..+++...   ..  ....+..+++.++..++.+.     
T Consensus       530 ~-------------~~~~~~~~~~--~l-~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~  593 (960)
T 1wa5_C          530 N-------------TSPAFIFHKE--DI-SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP  593 (960)
T ss_dssp             S-------------SSCCBSSCGG--GT-TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH
T ss_pred             c-------------ccccccccHH--Hh-hhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH
Confidence            0             0000000000  00 0133567777777776531   11  34578888888888776431     


Q ss_pred             -hHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhccc
Q psy14015        233 -LKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       233 -~~~~llp~l~~ll~D~-~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~D  286 (318)
                       +...++..+....+++ ++..+..+.++++.++...+++.   ..+.++|.+...+..
T Consensus       594 ~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~  652 (960)
T 1wa5_C          594 QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE  652 (960)
T ss_dssp             HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Confidence             2223334444444444 55778788999999998866653   345688888887765

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.52  E-value=2.4e-06  Score=88.00  Aligned_cols=240  Identities=8%  Similarity=0.070  Sum_probs=142.0

Q ss_pred             HHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcC-----ChHH-HHHHHHHHHcccccC------cCcccchhccc
Q psy14015         27 VQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIY-----DEDE-VLLALAEQLGTFTPN------VGGPEYVHCLL   92 (318)
Q Consensus        27 ~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~-----D~~~-VR~~aa~~L~~l~~~------~~~~~~~~~ll   92 (318)
                      +.+|..+++.|..+....+...  ....+++++.+++.     ..++ ++..+.+-+..+++.      +..+.+...++
T Consensus       260 ~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li  339 (960)
T 1wa5_C          260 IKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT  339 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHH
Confidence            3466777777777764433221  12334444444332     2233 777777777766542      11111222222


Q ss_pred             -hHHhhhc-----------c------------CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhc------CCC
Q psy14015         93 -PPLESLA-----------T------------VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS------GDW  142 (318)
Q Consensus        93 -p~l~~l~-----------~------------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~------d~~  142 (318)
                       +++...+           .            ++.+.+|.+|...+..++...+ +.+...+++.+.+.++      +++
T Consensus       340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~  418 (960)
T 1wa5_C          340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKN  418 (960)
T ss_dssp             HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----C
T ss_pred             HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchh
Confidence             2221111           1            1123689999999999999887 5566667777776655      567


Q ss_pred             chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC---CHHHHHHHHH
Q psy14015        143 FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD---TPMVRRAAAG  219 (318)
Q Consensus       143 ~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~---~~~VR~~aa~  219 (318)
                      |+.|.+|..+++.+..+......        .. ....+.         -.....+...+...++|+   .+.||..++.
T Consensus       419 w~~reaal~algaia~~~~~~~~--------~~-~~~~~~---------~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~  480 (960)
T 1wa5_C          419 WKFKDLYIYLFTALAINGNITNA--------GV-SSTNNL---------LNVVDFFTKEIAPDLTSNNIPHIILRVDAIK  480 (960)
T ss_dssp             HHHHHHHHHHHHHHHBSSCCBTT--------BC-CCBCTT---------CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccC--------Cc-cccccc---------ccHHHHHHHHhHHHhcCCCCCCceehHHHHH
Confidence            99999999988877543211000        00 000000         011122223334445676   8999999999


Q ss_pred             hhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC----------hhhhh---HhhHHHHHHhccc
Q psy14015        220 KLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS----------QSDVE---QLVMPTLRQCSVQ  286 (318)
Q Consensus       220 ~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~----------~~~~~---~~l~p~l~~ll~D  286 (318)
                      .+|.++..+.++ ....++|.+.+.+.|++..||..|+.++..+++...          ++...   ..+++.+..+++.
T Consensus       481 ~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~  559 (960)
T 1wa5_C          481 YIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK  559 (960)
T ss_dssp             HHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence            999999887544 467889988888999999999999999999987532          33232   3355566666665

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.50  E-value=1.4e-07  Score=85.89  Aligned_cols=236  Identities=12%  Similarity=0.073  Sum_probs=114.8

Q ss_pred             HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh
Q psy14015         20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL   98 (318)
Q Consensus        20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l   98 (318)
                      +.++++|...|+..--.+-..+.. .++ .. -....+.+=++++++ +|..+.+.|+.+..    +...+.+.+.+.+.
T Consensus        75 kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~  147 (355)
T 3tjz_B           75 KLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQA  147 (355)
T ss_dssp             GGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHH
Confidence            455566665555444444333322 111 11 112222222333445 77777777666643    44556666667777


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccC
Q psy14015         99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD  178 (318)
Q Consensus        99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~  178 (318)
                      +.|.++.||.+|+-+...+.... ++.+ +.+++.+.+++.|.+..|-+.|..++..+...-    +..           
T Consensus       148 L~d~~pyVRk~A~l~~~kL~~~~-pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d----~~a-----------  210 (355)
T 3tjz_B          148 IVDKVPSVSSSALVSSLHLLKCS-FDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND----RLA-----------  210 (355)
T ss_dssp             HTCSSHHHHHHHHHHHHHHTTTC-HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC----HHH-----------
T ss_pred             cCCCCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc----hHH-----------
Confidence            77777777777776666665443 2222 335666666666666666666655555442210    111           


Q ss_pred             CCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHH
Q psy14015        179 DTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVE  258 (318)
Q Consensus       179 ~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~  258 (318)
                                      ...+++.+.+- .-.++-.--..+..+..++..-. +.....+++.+...++..+..|--.|+.
T Consensus       211 ----------------~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~~~aVvyEa~k  272 (355)
T 3tjz_B          211 ----------------VSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNKHEMVVYEAAS  272 (355)
T ss_dssp             ----------------HHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHH
T ss_pred             ----------------HHHHHHHHhcC-CCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence                            12233333221 11112111123444444443210 1223568888889999999999999999


Q ss_pred             HHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        259 ACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       259 ~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +|..+.. .+.. ......+.+..++..          .++++|+.++.+.
T Consensus       273 ~I~~l~~-~~~~-~~~~a~~~L~~fLss----------~d~niryvaLr~L  311 (355)
T 3tjz_B          273 AIVNLPG-CSAK-ELAPAVSVLQLFCSS----------PKAALRYAAVRTL  311 (355)
T ss_dssp             HHTC-------------CCCTHHHHHHS----------SSSSSHHHHHHCC
T ss_pred             HHHhccC-CCHH-HHHHHHHHHHHHHcC----------CCchHHHHHHHHH
Confidence            9988876 3222 223456677788888          8899999887654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.42  E-value=1e-05  Score=70.44  Aligned_cols=176  Identities=12%  Similarity=0.028  Sum_probs=122.2

Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh---HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015         95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAH---FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH  171 (318)
Q Consensus        95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~---ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~  171 (318)
                      +...+-+.+..-|.+|++.|....+..+.+ +...   +++.+.-.+.|.+..+=..+.+.+..++..            
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~-~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~------------  117 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRS-LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL------------  117 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHH-HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------
Confidence            334444456788889999988877654332 2221   344433223466665555555554433222            


Q ss_pred             HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015        172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS  251 (318)
Q Consensus       172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~  251 (318)
                         +.......        .+.....++|.++..+-|....||..+-..+..+....++    ..+.+.+...+++-+|.
T Consensus       118 ---l~~~~y~~--------~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R  182 (266)
T 2of3_A          118 ---IRDTETPM--------SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNAR  182 (266)
T ss_dssp             ---HHHTTCCC--------CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHH
T ss_pred             ---HHhccccc--------hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHH
Confidence               22211110        0011256889999999999999999999999998887766    45777777888999999


Q ss_pred             HHHHHHHHHHHHHhhCChhhhhHhhH---HHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015        252 VRLLAVEACVSIASLLSQSDVEQLVM---PTLRQCSVQIVDHKFCPNNEFHPLELHVISATT  310 (318)
Q Consensus       252 VR~aa~~~l~~l~~~l~~~~~~~~l~---p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~  310 (318)
                      +|..++..+..+.+..|...  ...+   |.+..++.|          .+++||-.++.+..
T Consensus       183 ~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D----------~d~~VR~aAl~~lv  232 (266)
T 2of3_A          183 QRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGD----------KDVNVRNAAINVLV  232 (266)
T ss_dssp             HHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGC----------SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcC----------CCHHHHHHHHHHHH
Confidence            99999999999999888863  3467   999999999          99999999886654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.40  E-value=7e-06  Score=81.34  Aligned_cols=210  Identities=12%  Similarity=0.055  Sum_probs=135.7

Q ss_pred             chhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchh---HHHHHHHHHHHHHHhhCChhH
Q psy14015         52 ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEET---VVRDKAVESLRLISAQHSPHD  125 (318)
Q Consensus        52 ~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~---~VR~~a~~~l~~l~~~~~~~~  125 (318)
                      .++|.|..++..+++ +|..+++.|..++..-..  .-..+..++.+.+++.+..+   .+|..|+.+|..+....+++.
T Consensus       457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~  536 (778)
T 3opb_A          457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL  536 (778)
T ss_dssp             THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence            478888888876666 999999999999753211  11234456666666655543   389999999999997666544


Q ss_pred             Hhh-----hHHHHHHHhhcC-CCch-------------hhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCc---cc
Q psy14015        126 LEA-----HFVPLVQRLASG-DWFT-------------SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP---MQ  183 (318)
Q Consensus       126 ~~~-----~ilp~~~~l~~d-~~~~-------------vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~v  183 (318)
                      ...     ..+|.+.+|+.. +...             .+..|+..|..+                   ++..+.   .+
T Consensus       537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNL-------------------As~~~n~~E~~  597 (778)
T 3opb_A          537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL-------------------ASSETSDGEEV  597 (778)
T ss_dssp             HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHH-------------------HHCCSHHHHHH
T ss_pred             HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHH-------------------hcCCcccchHH
Confidence            321     366777777762 2211             133444444443                   333211   11


Q ss_pred             ccchhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhH-------hhHHHHHHHhhcCCcHHHH
Q psy14015        184 QGHVWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLK-------TDIIPMFVNLAQDEQDSVR  253 (318)
Q Consensus       184 R~~v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~-------~~llp~l~~ll~D~~~~VR  253 (318)
                      |++      ..+ ...+|.+..++.+++..||++|+..+..++..-..  ..+.       ..-++.+..++...+..+|
T Consensus       598 r~~------Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r  671 (778)
T 3opb_A          598 CKH------IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQ  671 (778)
T ss_dssp             HHH------HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHH
T ss_pred             HHH------HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHH
Confidence            111      122 25789999999999999999999999999963321  1111       1137889999999999999


Q ss_pred             HHHHHHHHHHHhhCCh---hhhh-HhhHHHHHHhccc
Q psy14015        254 LLAVEACVSIASLLSQ---SDVE-QLVMPTLRQCSVQ  286 (318)
Q Consensus       254 ~aa~~~l~~l~~~l~~---~~~~-~~l~p~l~~ll~D  286 (318)
                      ++|+.++..+....+.   .-.. ...++.+..++.|
T Consensus       672 ~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~  708 (778)
T 3opb_A          672 RAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD  708 (778)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence            9999999998643322   1112 2466777777777

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.40  E-value=6.1e-05  Score=61.30  Aligned_cols=211  Identities=17%  Similarity=0.163  Sum_probs=135.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChH-HHHHHHHHHHcccccCcCcccchhccc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDED-EVLLALAEQLGTFTPNVGGPEYVHCLL   92 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ll   92 (318)
                      +..++..|.|+=|.+|-++++-+..++.....  ..+-++..+..++ .++. +.-.++++.+|.++..  .++....++
T Consensus        34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--~Pe~v~~vV  109 (253)
T 2db0_A           34 LKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMI  109 (253)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--CHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--CHHHHHhhH
Confidence            34677888888899999999999998765332  2222333333333 3333 3668888999988752  345566677


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                      |++..-..--++.+|..-.++|..+....+. .... +..-+..|+.+++..-|..|..-++.+    +...-.      
T Consensus       110 p~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~-v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~------  177 (253)
T 2db0_A          110 PVLFANYRIGDEKTKINVSYALEEIAKANPM-LMAS-IVRDFMSMLSSKNREDKLTALNFIEAM----GENSFK------  177 (253)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHH-HHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHH------
T ss_pred             HHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHH-HHHHHHHHhcCCChHHHHHHHHHHHHH----hccCcc------
Confidence            8664432323678888888888888865432 2122 333455677888766666554433322    221110      


Q ss_pred             HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHH
Q psy14015        173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSV  252 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~V  252 (318)
                                           +-.-.+|-+..++.|.+.-||..+..+|+.++..=  +.+...+...+. =++|++..|
T Consensus       178 ---------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n--pklRkii~~kl~-e~~D~S~lv  233 (253)
T 2db0_A          178 ---------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN--DKLRKVVIKRLE-ELNDTSSLV  233 (253)
T ss_dssp             ---------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHH-HCCCSCHHH
T ss_pred             ---------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC--HHHHHHHHHHHH-HhcCcHHHH
Confidence                                 11224788899999999999999999999999731  222222333333 358999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14015        253 RLLAVEACVSIAS  265 (318)
Q Consensus       253 R~aa~~~l~~l~~  265 (318)
                      .....++++.+.-
T Consensus       234 ~~~V~egL~rl~l  246 (253)
T 2db0_A          234 NKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988874

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=98.39  E-value=3.3e-05  Score=74.89  Aligned_cols=249  Identities=15%  Similarity=0.112  Sum_probs=155.3

Q ss_pred             HHHHHHHhcC-ccHHHHHHHHHhHHHHHHhhC-hHhHhhchhhhhhhhc-----------------CC-hHH-HHHHHHH
Q psy14015         15 IAVLIDELKN-EDVQLRLNSIKKLSTIALALG-QERTRGELIPFLTETI-----------------YD-EDE-VLLALAE   73 (318)
Q Consensus        15 i~~l~~~l~~-~~~~~R~~~~~~L~~ia~~lg-~~~~~~~llp~l~~l~-----------------~D-~~~-VR~~aa~   73 (318)
                      |+.+++.|++ .+..++..++..|..++..-. .......-+|.|.+++                 .+ +++ |+..++.
T Consensus       135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~  214 (584)
T 3l6x_A          135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG  214 (584)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHH
Confidence            7788888886 577888898888888865211 1112234567776654                 12 234 9999999


Q ss_pred             HHcccccCcC--cccch--hccchHHhhhcc------CchhHHHHHHHHHHHHHHhhCChh-------------------
Q psy14015         74 QLGTFTPNVG--GPEYV--HCLLPPLESLAT------VEETVVRDKAVESLRLISAQHSPH-------------------  124 (318)
Q Consensus        74 ~L~~l~~~~~--~~~~~--~~llp~l~~l~~------d~~~~VR~~a~~~l~~l~~~~~~~-------------------  124 (318)
                      .|..++..-.  .....  ..+++.|..++.      +.+....+.|+.+|..++-....+                   
T Consensus       215 ~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~  294 (584)
T 3l6x_A          215 CLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTG  294 (584)
T ss_dssp             HHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------------
T ss_pred             HHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccccc
Confidence            9999875210  00000  123344444433      345677788888888877542111                   


Q ss_pred             -----H----HhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccc
Q psy14015        125 -----D----LEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGV  194 (318)
Q Consensus       125 -----~----~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~  194 (318)
                           .    +....++.+..+++ .....++..|+..|..++..-... ...+    +..                 ..
T Consensus       295 ~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-~~~~----~~~-----------------v~  352 (584)
T 3l6x_A          295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-GRYI----RSA-----------------LR  352 (584)
T ss_dssp             -CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-HHHH----HHH-----------------HT
T ss_pred             ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-cHHH----HHH-----------------HH
Confidence                 0    11123455555553 345677777777776654321110 0000    000                 12


Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhhHhhHHHHHHHhhcCC--------cHHHHHHHHHHHHHHHh
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVNLAQDE--------QDSVRLLAVEACVSIAS  265 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~~~~llp~l~~ll~D~--------~~~VR~aa~~~l~~l~~  265 (318)
                      ....+|.+.+++..++..|++.++.+|+.++..-.. +.+....+|-|..++.++        +..++..++.+++++..
T Consensus       353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a  432 (584)
T 3l6x_A          353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA  432 (584)
T ss_dssp             SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence            256799999999999999999999999999864332 234556899999999876        46788888888888763


Q ss_pred             hCChhhh----hHhhHHHHHHhccc
Q psy14015        266 LLSQSDV----EQLVMPTLRQCSVQ  286 (318)
Q Consensus       266 ~l~~~~~----~~~l~p~l~~ll~D  286 (318)
                      . +++..    ..-.+|.|..++.+
T Consensus       433 ~-~~~~~~~I~~~g~I~~Lv~LL~s  456 (584)
T 3l6x_A          433 E-NLEAAKKLRETQGIEKLVLINKS  456 (584)
T ss_dssp             T-CHHHHHHHHHTTHHHHHHHHHTC
T ss_pred             C-CHHHHHHHHHCCChHHHHHHHhC
Confidence            2 22222    23489999999998

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.34  E-value=4e-05  Score=64.74  Aligned_cols=211  Identities=15%  Similarity=0.170  Sum_probs=149.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC-cccchh
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG-GPEYVH   89 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~-~~~~~~   89 (318)
                      +..++..+.++|..++..+...|.++-+....   ....++++|-+.+++.++++ |-.-+.+.|+.+...+. +++...
T Consensus        35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~  114 (265)
T 3b2a_A           35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL  114 (265)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            55677888999999999999999998766421   12467889999999988888 88888999998876433 233445


Q ss_pred             ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR  169 (318)
Q Consensus        90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~  169 (318)
                      .+...+..+.++.++-.+..|++.+..+ .....   ...+..++.++.++++.+++.++..+|-.+..+-++.      
T Consensus       115 Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~------  184 (265)
T 3b2a_A          115 KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS------  184 (265)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC------
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH------
Confidence            5778888888988999999999999888 33221   2236667777888888888888877776665443321      


Q ss_pred             HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh---HhhHHHHHHHhh-
Q psy14015        170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL---KTDIIPMFVNLA-  245 (318)
Q Consensus       170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~ll-  245 (318)
                                             ...+.++.-+..+++.+++.++.-|...+-.+...-=.+.+   ...+...+.++. 
T Consensus       185 -----------------------~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~  241 (265)
T 3b2a_A          185 -----------------------GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVY  241 (265)
T ss_dssp             -----------------------CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGG
T ss_pred             -----------------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHH
Confidence                                   13344555667788889999999999888887753211211   234555666776 


Q ss_pred             cCCcHHHHHHHHH
Q psy14015        246 QDEQDSVRLLAVE  258 (318)
Q Consensus       246 ~D~~~~VR~aa~~  258 (318)
                      .-..+.+|..|-.
T Consensus       242 ~~~~~~~~~ka~~  254 (265)
T 3b2a_A          242 REGAPIIRLKAKK  254 (265)
T ss_dssp             CSSCHHHHHHHHH
T ss_pred             hcCChhHHHHHHH
Confidence            6667777776543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.31  E-value=3.4e-05  Score=76.46  Aligned_cols=252  Identities=12%  Similarity=0.113  Sum_probs=164.2

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--hHhHhhchhhhhhhhcCCh-HH---HHHHHHHHHcccccC------
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG--QERTRGELIPFLTETIYDE-DE---VLLALAEQLGTFTPN------   81 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~~~~~~~llp~l~~l~~D~-~~---VR~~aa~~L~~l~~~------   81 (318)
                      -|+.+...++++++.+|..+++.|..++..-.  ..-..+-.+|.|..++... ..   +|..|+.+|.++...      
T Consensus       458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~  537 (778)
T 3opb_A          458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI  537 (778)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence            36677888899999999999999999974311  1112334466666666543 22   799999999988632      


Q ss_pred             cCcccchhccchHHhhhcc-Cchh-------------HHHHHHHHHHHHHHhhCCh------hHHhh--hHHHHHHHhhc
Q psy14015         82 VGGPEYVHCLLPPLESLAT-VEET-------------VVRDKAVESLRLISAQHSP------HDLEA--HFVPLVQRLAS  139 (318)
Q Consensus        82 ~~~~~~~~~llp~l~~l~~-d~~~-------------~VR~~a~~~l~~l~~~~~~------~~~~~--~ilp~~~~l~~  139 (318)
                      +++... ...+|-|..|+. +++.             .-+..|+.+|..++..-+.      ..+..  ..+|.+.+++.
T Consensus       538 f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~  616 (778)
T 3opb_A          538 FKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML  616 (778)
T ss_dssp             SSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred             cCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence            222111 245566777766 2221             2266788899999987532      22333  47899999999


Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG  219 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~  219 (318)
                      +++..+|.+|++++..+...... ....       +.....|            ....=++.+..+++.++.++|++|+.
T Consensus       617 s~n~~VrrAA~elI~NL~~~~e~-i~~k-------~~~~~~~------------~~~~rL~lLV~Ll~s~D~~~r~AAag  676 (778)
T 3opb_A          617 DENVPLQRSTLELISNMMSHPLT-IAAK-------FFNLENP------------QSLRNFNILVKLLQLSDVESQRAVAA  676 (778)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSGGG-TGGG-------TSCCSSH------------HHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCcHH-HHHH-------HHhhcCc------------hhhccHHHHHHHHcCCCHHHHHHHHH
Confidence            98999999999999877542110 0000       0000000            01123789999999999999999999


Q ss_pred             hhHHHHHHhch--hh-hH-hhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhC----Chhh-----hhHhhHHHHHHhc
Q psy14015        220 KLGELAKVVEV--DY-LK-TDIIPMFVNLAQD--EQDSVRLLAVEACVSIASLL----SQSD-----VEQLVMPTLRQCS  284 (318)
Q Consensus       220 ~L~~l~~~~~~--~~-~~-~~llp~l~~ll~D--~~~~VR~aa~~~l~~l~~~l----~~~~-----~~~~l~p~l~~ll  284 (318)
                      +|+.+....+.  +. +. ...++.+..++++  ++..+|..++..+.+++...    +.+.     ..+.+...+...+
T Consensus       677 ALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l  756 (778)
T 3opb_A          677 IFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSL  756 (778)
T ss_dssp             HHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             HHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHH
Confidence            99998643221  11 12 2477778888888  88999999999999999743    2111     1244677788888


Q ss_pred             cc
Q psy14015        285 VQ  286 (318)
Q Consensus       285 ~D  286 (318)
                      +.
T Consensus       757 k~  758 (778)
T 3opb_A          757 KR  758 (778)
T ss_dssp             SS
T ss_pred             hC
Confidence            77

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.25  E-value=3.8e-05  Score=64.88  Aligned_cols=179  Identities=13%  Similarity=0.028  Sum_probs=112.5

Q ss_pred             hhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh-hHHh
Q psy14015         53 LIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDLE  127 (318)
Q Consensus        53 llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~  127 (318)
                      -+..+..++.|.++ |+..+...|+++.+...+   ....+.++|-+..++.++++.|-..|+.++..+.+..+. +...
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            45666677776665 777777777777664432   123355667777777777777777777777777766654 3444


Q ss_pred             hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      ..+...+..+.++++.-.+..|++.+|++  ...                               .....++..+.+++.
T Consensus       114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~-------------------------------~~~~~V~~~l~sLl~  160 (265)
T 3b2a_A          114 LKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL-------------------------------EDSKLVRTYINELVV  160 (265)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS-------------------------------CCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc-------------------------------cchHHHHHHHHHHHh
Confidence            55666666666666666666666666654  111                               112456666677777


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      ..+.+|..++...|-+++..-+.......++.=+..+++.+++.++..+..++-.+.
T Consensus       161 Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il  217 (265)
T 3b2a_A          161 SPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL  217 (265)
T ss_dssp             CSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             CCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            777777777777777777655554555666666667777777777776655554444

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.25  E-value=2e-05  Score=81.09  Aligned_cols=151  Identities=7%  Similarity=0.006  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-----CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCC
Q psy14015        105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-----DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD  179 (318)
Q Consensus       105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-----~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~  179 (318)
                      .-|..+.+.+..++..++ +.+...+++.+.+.++.     .+|..|.+++..++.+..++......             
T Consensus       436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~-------------  501 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKR-------------  501 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------C-------------
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhH-------------
Confidence            568888889988888777 45555667776655433     68999999999998876655432111             


Q ss_pred             CcccccchhhcCccchHHHHHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHHH
Q psy14015        180 TPMQQGHVWECGSGVKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAV  257 (318)
Q Consensus       180 ~~~vR~~v~~~~~~~~~~ll~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa~  257 (318)
                                    .-..+++.+..+. +|+++.||..++..+|.++..++.+ .....++|.+...+ |  +.|+..|+
T Consensus       502 --------------~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~  564 (971)
T 2x1g_F          502 --------------QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQAT  564 (971)
T ss_dssp             --------------HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHH
T ss_pred             --------------HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHH
Confidence                          1244566555555 3679999999999999999988743 34567888777777 4  67999999


Q ss_pred             HHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015        258 EACVSIASLLSQS--DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       258 ~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D  286 (318)
                      .++..+++.+++.  ...+.++..+..++..
T Consensus       565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~  595 (971)
T 2x1g_F          565 LGLKELCRDCQLQLKPYADPLLNACHASLNT  595 (971)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence            9999999877543  1223355555555554

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.24  E-value=1.1e-05  Score=83.06  Aligned_cols=174  Identities=7%  Similarity=0.019  Sum_probs=121.0

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhccC-----chhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhh-
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATV-----EETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLA-  138 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d-----~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~-  138 (318)
                      .|++++..|..++..+| ....+.+++.+.+.+..     +++..|++|+.++..+++.+..+.  ....+++.+..+. 
T Consensus       437 ~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~  515 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY  515 (971)
T ss_dssp             HHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence            78889999988888776 45666777777766544     578899999999999998876532  2233566555555 


Q ss_pred             cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHH
Q psy14015        139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAA  218 (318)
Q Consensus       139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa  218 (318)
                      +|+...+|..++..++.+...+...                 +           ..-..+++.+...+ |  +.|+..|+
T Consensus       516 ~d~~~~vr~~a~~~l~~~~~~l~~~-----------------~-----------~~l~~vl~~l~~~l-~--~~v~~~A~  564 (971)
T 2x1g_F          516 EKLNVKLLGTALETMGSYCNWLMEN-----------------P-----------AYIPPAINLLVRGL-N--SSMSAQAT  564 (971)
T ss_dssp             TTSCHHHHHHHHHHHHHTHHHHC--------------------------------CHHHHHHHHHHHH-H--SSCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHhcC-----------------H-----------HHHHHHHHHHHHHh-C--hHHHHHHH
Confidence            3567889999999888654332211                 0           13356677777777 4  78999999


Q ss_pred             HhhHHHHHHhchh--hhHhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015        219 GKLGELAKVVEVD--YLKTDIIPMFVNLAQD--EQDSVRLLAVEACVSIASLLSQSDV  272 (318)
Q Consensus       219 ~~L~~l~~~~~~~--~~~~~llp~l~~ll~D--~~~~VR~aa~~~l~~l~~~l~~~~~  272 (318)
                      .+|..+++.++.+  ...+.++..+..++..  ....+|..+.++++.++..++.+..
T Consensus       565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~  622 (971)
T 2x1g_F          565 LGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI  622 (971)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999876543  1234566666666666  3578999999999999988774443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.19  E-value=5.8e-06  Score=78.08  Aligned_cols=189  Identities=18%  Similarity=0.125  Sum_probs=126.6

Q ss_pred             HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhH
Q psy14015         27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV  105 (318)
Q Consensus        27 ~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~  105 (318)
                      +.||-.+++.|+.+ ..+.++   ..++-.+...+....| ||.+..-.|+-+.+.+..   ...++|.+...+.|.+++
T Consensus       242 APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDD  314 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDED  314 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHH
T ss_pred             eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccH
Confidence            46899999999998 777765   2233333334466778 999999888877544432   566788888888999999


Q ss_pred             HHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCccccc
Q psy14015        106 VRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQG  185 (318)
Q Consensus       106 VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~  185 (318)
                      ||..|+++|..++..-.-..+...++..+.++  |+--..-.+...+|++++                   +.....   
T Consensus       315 VRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~-------------------s~p~~a---  370 (800)
T 3oc3_A          315 IKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIY-------------------RENPEL---  370 (800)
T ss_dssp             HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHH-------------------HHCTTC---
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHH-------------------cCCccc---
Confidence            99999999999982111133334444444444  332222223333343332                   221100   


Q ss_pred             chhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHH-HHHHhhcCCcHHHHHHHHHHHH
Q psy14015        186 HVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP-MFVNLAQDEQDSVRLLAVEACV  261 (318)
Q Consensus       186 ~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp-~l~~ll~D~~~~VR~aa~~~l~  261 (318)
                             .....++|.+..++.+.-..||+++..++..+..        ..++. +|.+++-+++..||..+.+...
T Consensus       371 -------~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~--------~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          371 -------SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE--------ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             -------CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC--------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             -------ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence                   1123788999999999999999999999988761        23344 7889999999999998887664

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.18  E-value=9.1e-05  Score=77.02  Aligned_cols=155  Identities=10%  Similarity=0.137  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcc
Q psy14015        105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM  182 (318)
Q Consensus       105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~  182 (318)
                      ..|..+.+.|..++.. .+..+...+.+.+.+..++  .+|+.|.+++..+|.+...........               
T Consensus       428 ~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~---------------  491 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKR---------------  491 (1049)
T ss_dssp             HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHH---------------
Confidence            4466777777777744 4556677788888877754  579999999999997765544321111               


Q ss_pred             cccchhhcCccchHHHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHH
Q psy14015        183 QQGHVWECGSGVKAELRSHFRNLCQ-----DDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLA  256 (318)
Q Consensus       183 vR~~v~~~~~~~~~~ll~~l~~l~~-----D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa  256 (318)
                                 ....+++.+..++.     |+.+.||..++..+|.++..+..+ .....+++.+...+.|+++.||..|
T Consensus       492 -----------~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A  560 (1049)
T 3m1i_C          492 -----------FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMA  560 (1049)
T ss_dssp             -----------HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence                       12445666666543     566788878999999999876543 3456678877788899999999999


Q ss_pred             HHHHHHHHhhCChhh----------hhHhhHHHHHHhccc
Q psy14015        257 VEACVSIASLLSQSD----------VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       257 ~~~l~~l~~~l~~~~----------~~~~l~p~l~~ll~D  286 (318)
                      +.++..+++.+++.-          ..+.++..+..++.+
T Consensus       561 ~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~  600 (1049)
T 3m1i_C          561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD  600 (1049)
T ss_dssp             HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh
Confidence            999999998766542          133455555555554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.12  E-value=0.0001  Score=75.62  Aligned_cols=208  Identities=14%  Similarity=0.093  Sum_probs=134.6

Q ss_pred             HHHHHHhHHHHHHhhChHhHhhchhhhhhhhc----CChHH-HHHHHHHHHcccccCcCcc--cchhccchHHhhhccCc
Q psy14015         30 RLNSIKKLSTIALALGQERTRGELIPFLTETI----YDEDE-VLLALAEQLGTFTPNVGGP--EYVHCLLPPLESLATVE  102 (318)
Q Consensus        30 R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~----~D~~~-VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~l~~d~  102 (318)
                      |..+...|..++...|.+ +...+++++.+.+    .+.+| .|.++...++.+++.+...  .....+++.+.++.. +
T Consensus       424 r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~  501 (963)
T 2x19_B          424 RVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-S  501 (963)
T ss_dssp             HHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-C
T ss_pred             HHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-C
Confidence            667777777777777754 5566777776666    55678 8999999999998765432  233445665555544 4


Q ss_pred             hhHHHHHHHHHHHHHHhhCCh-hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCc
Q psy14015        103 ETVVRDKAVESLRLISAQHSP-HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP  181 (318)
Q Consensus       103 ~~~VR~~a~~~l~~l~~~~~~-~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~  181 (318)
                      ++.||..+...++.+++.+.. ......+++.+.+.+++  ..+|..|+..|..++......               ..|
T Consensus       502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~---------------l~p  564 (963)
T 2x19_B          502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD---------------LPP  564 (963)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG---------------CTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH---------------HHh
Confidence            678999999999999887643 23445577777766665  678888888887665432211               111


Q ss_pred             ccccchhhcCccchHHHHHHHHHhhcC--CCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHH----HHhhcCC-cHH
Q psy14015        182 MQQGHVWECGSGVKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMF----VNLAQDE-QDS  251 (318)
Q Consensus       182 ~vR~~v~~~~~~~~~~ll~~l~~l~~D--~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l----~~ll~D~-~~~  251 (318)
                                  ..+.++..+.++++.  -....|..+..+++.++...+.+   ...+.+++.+    ....+.+ +..
T Consensus       565 ------------~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~  632 (963)
T 2x19_B          565 ------------YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPS  632 (963)
T ss_dssp             ------------THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHH
T ss_pred             ------------hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence                        235667777776663  46789999999999998766522   1223344333    3333222 444


Q ss_pred             HHH---HHHHHHHHHHhhCC
Q psy14015        252 VRL---LAVEACVSIASLLS  268 (318)
Q Consensus       252 VR~---aa~~~l~~l~~~l~  268 (318)
                      .|.   .+.+.++.++..++
T Consensus       633 ~~~~~~~~l~~l~~i~~~~~  652 (963)
T 2x19_B          633 NKLAIVHILGLLSNLFTTLD  652 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            444   45566777777775

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.09  E-value=0.00015  Score=59.07  Aligned_cols=205  Identities=14%  Similarity=0.120  Sum_probs=128.2

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh----ccCchhHHHHHHHHHHHHHHhhCChhH
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL----ATVEETVVRDKAVESLRLISAQHSPHD  125 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l----~~d~~~~VR~~a~~~l~~l~~~~~~~~  125 (318)
                      ++++..+..+++|+-| |++.+...+..+++.     ..+.+-|.+..|    -+++.-..-..-..+++.++.. .++.
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~  104 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL  104 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH
Confidence            4567777789999999 999999999988752     222233443333    2344322323444566666654 3333


Q ss_pred             HhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015        126 LEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN  204 (318)
Q Consensus       126 ~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~  204 (318)
                       ...++|.+.. +.-+ ....|.+..+.|+.+...-+.                               .-..+..-+..
T Consensus       105 -v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~-------------------------------l~~~v~rdi~s  151 (253)
T 2db0_A          105 -VKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPM-------------------------------LMASIVRDFMS  151 (253)
T ss_dssp             -HHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHH-------------------------------HHHHHHHHHHH
T ss_pred             -HHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChH-------------------------------HHHHHHHHHHH
Confidence             3336777643 3222 456777777776655321110                               12334455677


Q ss_pred             hhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhc
Q psy14015        205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS  284 (318)
Q Consensus       205 l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll  284 (318)
                      +++|++..-|.++..-++.++.+ +. ....-.+|-+..|+.|.+..||.+++++++.++..-++   ...++-..++-+
T Consensus       152 mltskd~~Dkl~aLnFi~alGen-~~-~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~  226 (253)
T 2db0_A          152 MLSSKNREDKLTALNFIEAMGEN-SF-KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEEL  226 (253)
T ss_dssp             HTSCSSHHHHHHHHHHHHTCCTT-TH-HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHC
T ss_pred             HhcCCChHHHHHHHHHHHHHhcc-Cc-cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHh
Confidence            88899988888777666655532 11 12355789999999999999999999999999965332   334445556667


Q ss_pred             cccccccccCCCCCCchhhHHhhhh
Q psy14015        285 VQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       285 ~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +|          ....|...|....
T Consensus       227 ~D----------~S~lv~~~V~egL  241 (253)
T 2db0_A          227 ND----------TSSLVNKTVKEGI  241 (253)
T ss_dssp             CC----------SCHHHHHHHHHHH
T ss_pred             cC----------cHHHHHHHHHHHH
Confidence            88          6666666665543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.09  E-value=0.00036  Score=71.59  Aligned_cols=220  Identities=11%  Similarity=0.106  Sum_probs=135.9

Q ss_pred             cCccHHHHHHHHHhHHHHHHhhChH--hHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCc-ccchhccchHHhhhc
Q psy14015         23 KNEDVQLRLNSIKKLSTIALALGQE--RTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG-PEYVHCLLPPLESLA   99 (318)
Q Consensus        23 ~~~~~~~R~~~~~~L~~ia~~lg~~--~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~-~~~~~~llp~l~~l~   99 (318)
                      ++.+|..|..++..++.++..+..+  .....+++.+..+.++...||..++..++.+++.++. +.....+++.+...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l  538 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL  538 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence            5778999999999999988665432  2345677777666664334999999999999887653 345566777666666


Q ss_pred             cCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015        100 TVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL  175 (318)
Q Consensus       100 ~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l  175 (318)
                      .+  +.||..|..++..+++..+..-  +.+.++..+.++++.  -....|..+.+.++.++...+.....   ..+   
T Consensus       539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~---~~~---  610 (963)
T 2x19_B          539 GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL---KNL---  610 (963)
T ss_dssp             TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH---HHH---
T ss_pred             CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH---HHH---
Confidence            55  7899999999999998764421  122344444444443  23467777777777666544311111   111   


Q ss_pred             ccCCCcccccchhhcCccchHHHHHHH----HHhhcC-CCHHHHH---HHHHhhHHHHHHhchh----------------
Q psy14015        176 CQDDTPMQQGHVWECGSGVKAELRSHF----RNLCQD-DTPMVRR---AAAGKLGELAKVVEVD----------------  231 (318)
Q Consensus       176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l----~~l~~D-~~~~VR~---~aa~~L~~l~~~~~~~----------------  231 (318)
                                          ..+++.+    ....+. .+++.|.   .+..+++.++..++..                
T Consensus       611 --------------------~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  670 (963)
T 2x19_B          611 --------------------HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV  670 (963)
T ss_dssp             --------------------HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------------
T ss_pred             --------------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCC
Confidence                                2223332    222322 3555555   4555566666665420                


Q ss_pred             --------hhHhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhCChh
Q psy14015        232 --------YLKTDIIPMFVNLAQD--EQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       232 --------~~~~~llp~l~~ll~D--~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                              .+.+.++|.+..+++.  .+..++..++..+..+...+|+.
T Consensus       671 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~  719 (963)
T 2x19_B          671 PQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD  719 (963)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence                    1345677766665531  23478888888888888777754

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.03  E-value=0.00019  Score=74.54  Aligned_cols=174  Identities=11%  Similarity=-0.026  Sum_probs=119.1

Q ss_pred             HHHHHHHHHcccccCcCcccchhccchHHhhhcc--CchhHHHHHHHHHHHHHHhhCChhH---HhhhHHHHHHHhhc--
Q psy14015         67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRLISAQHSPHD---LEAHFVPLVQRLAS--  139 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~ilp~~~~l~~--  139 (318)
                      .|+++...|..++... +....+.+++.+.+.+.  ..++..|++|+.+++.+++.+....   ....+++.+..+..  
T Consensus       429 ~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence            6778888888777533 44556667777777765  3578889999999999988776542   23345555555432  


Q ss_pred             ---CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHH
Q psy14015        140 ---GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRA  216 (318)
Q Consensus       140 ---d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~  216 (318)
                         |+.+.+|..++.++|.+...+...                 |           ..-..+++.++..+.|+++.||..
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~~~-----------------~-----------~~l~~vl~~ll~~l~~~~~~V~~~  559 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAH-----------------W-----------NFLRTVILKLFEFMHETHEGVQDM  559 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHC-----------------H-----------HHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhH-----------------H-----------HHHHHHHHHHHHHhcCCCHHHHHH
Confidence               234555656777766442211100                 0           123556777788889999999999


Q ss_pred             HHHhhHHHHHHhchhh----------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015        217 AAGKLGELAKVVEVDY----------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       217 aa~~L~~l~~~~~~~~----------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      |+.+|..++..++...          ..+.++..+..++.+....-+..+.++++.+....+.
T Consensus       560 A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~  622 (1049)
T 3m1i_C          560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1049)
T ss_dssp             HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999776432          2456666666777777776778889999999988873

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.01  E-value=0.00016  Score=73.87  Aligned_cols=218  Identities=14%  Similarity=0.170  Sum_probs=159.8

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc--ccchhc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG--PEYVHC   90 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~--~~~~~~   90 (318)
                      ++.+++...|....+|..+......+...+.++.. ..++|.+...++.. .| .+.++...+..+++....  ......
T Consensus        97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~  175 (986)
T 2iw3_A           97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE  175 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence            67888999999999999999999999999999865 88899998777554 68 999999999998864321  123466


Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhh--hccccCcchHHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSV--CYPRVTAGVKAEL  168 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~--~~~~~~~~~~~~l  168 (318)
                      ++|++....-|.-++|..+|.+++..++..++..++.. ++|.+.+-..+|+. +-.+ +..|+.  +...+.   .   
T Consensus       176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~-~~~~~~~~~~~p~~-~~~~-~~~l~~~tfv~~v~---~---  246 (986)
T 2iw3_A          176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCIADPTE-VPET-VHLLGATTFVAEVT---P---  246 (986)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG-GHHHHHHHHHCTTH-HHHH-HHHHTTCCCCSCCC---H---
T ss_pred             hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh-hHHHHHHHhcChhh-hHHH-HHHhhcCeeEeeec---c---
Confidence            89999999999999999999999999999988877766 67777666666632 2211 222220  111111   1   


Q ss_pred             HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHh
Q psy14015        169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNL  244 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~l  244 (318)
                                              .+-.-+.|.+..-+++....+++.++--...++.-....    .+...++|-+++.
T Consensus       247 ------------------------~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~  302 (986)
T 2iw3_A          247 ------------------------ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN  302 (986)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH
T ss_pred             ------------------------hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH
Confidence                                    122457899999999998888887877777777655433    3456788877775


Q ss_pred             h-cCCcHHHHHHHHHHHHHHHhh
Q psy14015        245 A-QDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       245 l-~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      . .=..+++|..+-.++..+-..
T Consensus       303 ~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          303 FATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             TTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHHHHHHh
Confidence            4 345778999998888887654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.90  E-value=7.1e-05  Score=69.64  Aligned_cols=258  Identities=13%  Similarity=0.123  Sum_probs=136.1

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHH
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPL   95 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l   95 (318)
                      ..++.-+. +.+..+-+++.++.--+.+..  ..++-+..+..|++|++. ||+.+.+.|+.+|+.    +....+..+|
T Consensus        33 ~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL  105 (507)
T 3u0r_A           33 VILDGVKG-GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADIL  105 (507)
T ss_dssp             HHHHGGGS-CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHH
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHH
Confidence            44455544 366666666776665544432  344556666677877776 888888888888763    4566677777


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc-----CcchHHHHHH
Q psy14015         96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV-----TAGVKAELRS  170 (318)
Q Consensus        96 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~-----~~~~~~~l~~  170 (318)
                      .+|+..++..-+...-.+|..+...-+...    +-.++.++.+++ ..+|.-+..-+..-+..+     +.+....+..
T Consensus       106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~~~-e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~  180 (507)
T 3u0r_A          106 TQLLQTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQGE-DIVRERAIKFLSTKLKTLPDEVLTKEVEELILT  180 (507)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHSC-HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcccc-hHHHHHHHHHHHHHHhhcchhhccHHHHHHHHH
Confidence            777776666666666666666665543332    222233333332 455555544443211111     1122222222


Q ss_pred             HHHhhccCCCcccccc---hh---hcCc--cchHHHHHHHHHhhc--------CCC--HHHHHHHHHhhHHHHHHhch--
Q psy14015        171 HFRNLCQDDTPMQQGH---VW---ECGS--GVKAELRSHFRNLCQ--------DDT--PMVRRAAAGKLGELAKVVEV--  230 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~---v~---~~~~--~~~~~ll~~l~~l~~--------D~~--~~VR~~aa~~L~~l~~~~~~--  230 (318)
                      .+.++..|.+-.-..-   +.   .+.+  ....+|++.+...+.        |..  .+...++-.+++-+......  
T Consensus       181 ~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~Stk  260 (507)
T 3u0r_A          181 ESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTR  260 (507)
T ss_dssp             HHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHH
Confidence            2333333332210000   00   0000  123456666655422        111  22333444444444433322  


Q ss_pred             --hhhHhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        231 --DYLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       231 --~~~~~~llp~l~~ll~D-~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                        +.+.+.++|.+..+... +....+--.+..+..++.+.|........+|.+..+|..
T Consensus       261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~  319 (507)
T 3u0r_A          261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLE  319 (507)
T ss_dssp             HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHH
Confidence              23456688877766442 333467778999999999999665566677777777765

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.79  E-value=0.00017  Score=74.69  Aligned_cols=153  Identities=10%  Similarity=-0.010  Sum_probs=97.2

Q ss_pred             cchHHhhhccC--chhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhc-----CCCchhhhhhhhhhhhhcccc
Q psy14015         91 LLPPLESLATV--EETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLAS-----GDWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        91 llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~-----d~~~~vR~~a~~~l~~~~~~~  160 (318)
                      +++.+.+.+..  .++..|++++-+++.+++...++   .....++|.+.++..     |+...+|.+++..+|....-+
T Consensus       452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl  531 (1023)
T 4hat_C          452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL  531 (1023)
T ss_dssp             HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence            44444433332  35666777777777777666543   223345555555554     234455666666666432211


Q ss_pred             CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh--------
Q psy14015        161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY--------  232 (318)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~--------  232 (318)
                      ..                 .|           ..-+.++..+.+.+.|+++.|..+|+.+|..+++.++..-        
T Consensus       532 ~~-----------------~~-----------~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~  583 (1023)
T 4hat_C          532 KA-----------------HW-----------NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1023)
T ss_dssp             HH-----------------CH-----------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             hc-----------------cH-----------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence            10                 00           1224456666777789999999999999999999876532        


Q ss_pred             --hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015        233 --LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  271 (318)
Q Consensus       233 --~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~  271 (318)
                        ....++..+.....+-+..-+..+.++++.+....+.+.
T Consensus       584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~  624 (1023)
T 4hat_C          584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA  624 (1023)
T ss_dssp             SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence              345566666776667777888899999999999998654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.77  E-value=0.00032  Score=72.55  Aligned_cols=132  Identities=11%  Similarity=0.184  Sum_probs=98.0

Q ss_pred             HHHHHHHhhCChhHHhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhh
Q psy14015        112 ESLRLISAQHSPHDLEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWE  189 (318)
Q Consensus       112 ~~l~~l~~~~~~~~~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~  189 (318)
                      ++|..+....+ .+....+++.+.+.+.+  .+|+.|.+++..+|.+.....+..-..                      
T Consensus       435 d~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~----------------------  491 (1023)
T 4hat_C          435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKR----------------------  491 (1023)
T ss_dssp             HHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHH----------------------
T ss_pred             HHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHH----------------------
Confidence            55655555444 46667788888776654  579999999999998877665431111                      


Q ss_pred             cCccchHHHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015        190 CGSGVKAELRSHFRNLCQ-----DDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI  263 (318)
Q Consensus       190 ~~~~~~~~ll~~l~~l~~-----D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l  263 (318)
                          .-..++|.+.+++.     |+...||..++..+|..+..+... .....+++.+...+.|+++.|..+|+.++..+
T Consensus       492 ----~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l  567 (1023)
T 4hat_C          492 ----FVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI  567 (1023)
T ss_dssp             ----HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence                12456788888886     577889999999999999987533 23455666777777899999999999999999


Q ss_pred             HhhCChh
Q psy14015        264 ASLLSQS  270 (318)
Q Consensus       264 ~~~l~~~  270 (318)
                      ++.+++.
T Consensus       568 ~~~c~~~  574 (1023)
T 4hat_C          568 VQKCKYH  574 (1023)
T ss_dssp             HHHHTHH
T ss_pred             HHHHHHH
Confidence            9877654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.65  E-value=0.00036  Score=71.94  Aligned_cols=100  Identities=10%  Similarity=0.009  Sum_probs=69.0

Q ss_pred             HHHHHHHHhh---cCCCHHHHHHHHHhhHHHHHHhchh--------hhHhhHHHHHHHhhc-----CCcHHHHHHHHHHH
Q psy14015        197 ELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVEVD--------YLKTDIIPMFVNLAQ-----DEQDSVRLLAVEAC  260 (318)
Q Consensus       197 ~ll~~l~~l~---~D~~~~VR~~aa~~L~~l~~~~~~~--------~~~~~llp~l~~ll~-----D~~~~VR~aa~~~l  260 (318)
                      .+.+.+.+.+   ...+|..++++..+|+.+++.+...        .....+++.+..+++     ++.+.||.+++..+
T Consensus       440 ~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l  519 (980)
T 3ibv_A          440 AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEIL  519 (980)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            3444444444   2456999999999999999876431        123468888888876     99999999999999


Q ss_pred             HHHHhhCChhh-hhHhhHHHHHH--hccccccccccCCCCCCchhhHHh
Q psy14015        261 VSIASLLSQSD-VEQLVMPTLRQ--CSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       261 ~~l~~~l~~~~-~~~~l~p~l~~--ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      +..++++.... ....+++.++.  .+.|          +.+.||..+.
T Consensus       520 ~rys~~~~~~~~~l~~~L~~ll~~~gl~~----------~~~~V~~~a~  558 (980)
T 3ibv_A          520 VRYASFFDYESAAIPALIEYFVGPRGIHN----------TNERVRPRAW  558 (980)
T ss_dssp             HHTGGGGGTCCTTHHHHHHHHTSTTTTTC----------CCTTTHHHHH
T ss_pred             HHHHHHHhcCchhHHHHHHHHhccccccC----------CChhHHHHHH
Confidence            99999996432 22334444555  5556          4555655544

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.39  E-value=0.0011  Score=56.63  Aligned_cols=171  Identities=9%  Similarity=0.031  Sum_probs=114.8

Q ss_pred             hccchHHhhhccCchh--HHHHHHHHHHHHHHhhCCh--hHHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         89 HCLLPPLESLATVEET--VVRDKAVESLRLISAQHSP--HDLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~--~VR~~a~~~l~~l~~~~~~--~~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ..-+|.+.+++..+++  .++..|+..+..++..-++  ..+. .-.+|.+.+++.+++..++..|++.|..+... .+.
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~   85 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DND   85 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHH
Confidence            4466777777776666  8888888888888754322  2232 23689999999988899999999988876432 122


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhc-hhhhHhhHHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVE-VDYLKTDIIPMF  241 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l  241 (318)
                      .+..+                         .....+|.+.+++. .+++++|+.++.+|-.++..-. ...+.+.-+|.+
T Consensus        86 nk~~I-------------------------~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~L  140 (233)
T 3tt9_A           86 NKLEV-------------------------AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTL  140 (233)
T ss_dssp             HHHHH-------------------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred             HHHHH-------------------------HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHH
Confidence            23222                         22346899999997 4789999999988888875322 223334456666


Q ss_pred             HHhhc-------C---------CcHHHHHHHHHHHHHHHhhCChhh---hh--HhhHHHHHHhccc
Q psy14015        242 VNLAQ-------D---------EQDSVRLLAVEACVSIASLLSQSD---VE--QLVMPTLRQCSVQ  286 (318)
Q Consensus       242 ~~ll~-------D---------~~~~VR~aa~~~l~~l~~~l~~~~---~~--~~l~p~l~~ll~D  286 (318)
                      ..++.       |         .+..|+..+..+|.+++.. +++.   ..  .-+++.|..+++.
T Consensus       141 v~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~  205 (233)
T 3tt9_A          141 TENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRG  205 (233)
T ss_dssp             CCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred             HHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHh
Confidence            65442       1         2458999999999998753 2221   11  2378888888775

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.25  E-value=0.015  Score=60.02  Aligned_cols=257  Identities=9%  Similarity=0.035  Sum_probs=134.4

Q ss_pred             ccHHHHHHHHHhHHHHHHhhChHhH-hhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhcc------chHHhh
Q psy14015         25 EDVQLRLNSIKKLSTIALALGQERT-RGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCL------LPPLES   97 (318)
Q Consensus        25 ~~~~~R~~~~~~L~~ia~~lg~~~~-~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~l------lp~l~~   97 (318)
                      .++..+..+++.|......+..... ...+++.+-+++.+ +++|.++++.|..+...-..+.....+      -+.+..
T Consensus       205 ~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~-~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~  283 (980)
T 3ibv_A          205 KNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI-EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK  283 (980)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC-hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence            4555555566655555444443322 34678877777776 458999999988876532222211111      123333


Q ss_pred             hcc-CchhHHHHHHHHHHHHHHh------hCC----hh------HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015         98 LAT-VEETVVRDKAVESLRLISA------QHS----PH------DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        98 l~~-d~~~~VR~~a~~~l~~l~~------~~~----~~------~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~  160 (318)
                      +.. ++|.++++.-.+.+..+++      ..+    .+      .....++|.+.....+++..+-..+..-+...+.  
T Consensus       284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~--  361 (980)
T 3ibv_A          284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV--  361 (980)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH--
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH--
Confidence            332 3344454433333333222      222    11      2233478888888777766554444333222111  


Q ss_pred             CcchHHHHHHHHHhhccCC-CcccccchhhcCccchHHHHHHHHHhhc---C---------CC----HHHHHHHHHhhHH
Q psy14015        161 TAGVKAELRSHFRNLCQDD-TPMQQGHVWECGSGVKAELRSHFRNLCQ---D---------DT----PMVRRAAAGKLGE  223 (318)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~-~~~vR~~v~~~~~~~~~~ll~~l~~l~~---D---------~~----~~VR~~aa~~L~~  223 (318)
                                .+....... .+...       ...-..+++.+.+-++   |         ++    -+.|+... .+-.
T Consensus       362 ----------~~~~~~~~~~~~~~~-------~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d  423 (980)
T 3ibv_A          362 ----------SLRKESSSKELSASL-------KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQD  423 (980)
T ss_dssp             ----------HHHHHTTSCCCCHHH-------HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHH
T ss_pred             ----------HHHhccccccccHHH-------HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHH
Confidence                      111000000 00000       0011223333332221   1         11    25788888 7778


Q ss_pred             HHHHhchhhhHh----hHHHHHHHhh---cCCcHHHHHHHHHHHHHHHhhCChh--------hhhHhhHHHHHHhccccc
Q psy14015        224 LAKVVEVDYLKT----DIIPMFVNLA---QDEQDSVRLLAVEACVSIASLLSQS--------DVEQLVMPTLRQCSVQIV  288 (318)
Q Consensus       224 l~~~~~~~~~~~----~llp~l~~ll---~D~~~~VR~aa~~~l~~l~~~l~~~--------~~~~~l~p~l~~ll~D~~  288 (318)
                      ....+|++.+..    .+.+.+.+.+   ..++|..+.+++.+++.+++.+...        .....+++.+..+++.. 
T Consensus       424 ~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~-  502 (980)
T 3ibv_A          424 TINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ-  502 (980)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS-
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC-
Confidence            888888887767    6777777665   3578999999999999999987642        12345788888887610 


Q ss_pred             cccccCCCCCCchhhHHhh
Q psy14015        289 DHKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       289 ~~~~~~~~~~~~Vr~~~i~  307 (318)
                          -...+.|-||.....
T Consensus       503 ----i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          503 ----VCRHPHPLVQLLYME  517 (980)
T ss_dssp             ----TTTCCCHHHHHHHHH
T ss_pred             ----CCCCCCHHHHHHHHH
Confidence                001167777776654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.14  E-value=0.0029  Score=54.05  Aligned_cols=130  Identities=10%  Similarity=0.037  Sum_probs=84.4

Q ss_pred             HHHHHHHhhcCCCc--hhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015        130 FVPLVQRLASGDWF--TSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       130 ilp~~~~l~~d~~~--~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      -+|.+.+++++++.  .++..|+..+..+...- ...+..+                         .....+|.|.+++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I-------------------------~~~G~Ip~LV~lL~   62 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRV-------------------------NQLRGILKLLQLLK   62 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHH-------------------------HHTTHHHHHHHGGG
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHH-------------------------HHcCCHHHHHHHHc
Confidence            45666677776665  67766766655433211 1122221                         12345899999999


Q ss_pred             CCCHHHHHHHHHhhHHHHHH-hc-hhhh-HhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhC-ChhhhhHhhHHHHHH
Q psy14015        208 DDTPMVRRAAAGKLGELAKV-VE-VDYL-KTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLL-SQSDVEQLVMPTLRQ  282 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~-~~-~~~~-~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l-~~~~~~~~l~p~l~~  282 (318)
                      .++..+++.|+.+|..++.. -. ...+ ..-.+|.+.++++ .+++.+|..++.+|-.++..- .+....+.-+|.|..
T Consensus        63 s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~  142 (233)
T 3tt9_A           63 VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTE  142 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHH
Confidence            99999999999999999852 11 1112 2348899999997 578999999999999998532 122222334666666


Q ss_pred             hcc
Q psy14015        283 CSV  285 (318)
Q Consensus       283 ll~  285 (318)
                      ++.
T Consensus       143 ll~  145 (233)
T 3tt9_A          143 NII  145 (233)
T ss_dssp             CCC
T ss_pred             HHh
Confidence            554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.64  E-value=0.02  Score=55.58  Aligned_cols=133  Identities=12%  Similarity=0.053  Sum_probs=82.2

Q ss_pred             HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015        130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD  209 (318)
Q Consensus       130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~  209 (318)
                      .++.+..+++..++.+|..++.+|..++..-+..++..+..                        ...-++.+..+++|+
T Consensus       123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~------------------------~p~gi~~Lv~lL~d~  178 (651)
T 3grl_A          123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV------------------------SPMGVSRLMDLLADS  178 (651)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH------------------------STTHHHHHHGGGGCS
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh------------------------CcccHHHHHHHHhCc
Confidence            67888889999999999999999987765544333333311                        123478899999999


Q ss_pred             CHHHHHHHHHhhHHHHHHhc-hhh--hHhhHHHHHHHhhcCCcH----HHHHHHHHHHHHHHhhCC--hhhhh-HhhHHH
Q psy14015        210 TPMVRRAAAGKLGELAKVVE-VDY--LKTDIIPMFVNLAQDEQD----SVRLLAVEACVSIASLLS--QSDVE-QLVMPT  279 (318)
Q Consensus       210 ~~~VR~~aa~~L~~l~~~~~-~~~--~~~~llp~l~~ll~D~~~----~VR~aa~~~l~~l~~~l~--~~~~~-~~l~p~  279 (318)
                      ...+|..++.-|..++..=. -++  ..+-.++.+.++++.+..    .|=.-++..+.+++..=.  +..+. ...+|.
T Consensus       179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~  258 (651)
T 3grl_A          179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR  258 (651)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence            99999999988888885211 001  122345555555555444    333334455666665421  12222 236677


Q ss_pred             HHHhccc
Q psy14015        280 LRQCSVQ  286 (318)
Q Consensus       280 l~~ll~D  286 (318)
                      +.++++.
T Consensus       259 L~~LL~~  265 (651)
T 3grl_A          259 MKPWFEV  265 (651)
T ss_dssp             GGGGGCC
T ss_pred             HHHHhCC
Confidence            7777764

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.63  E-value=0.39  Score=43.78  Aligned_cols=255  Identities=12%  Similarity=0.071  Sum_probs=144.1

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      +..++...+.....+++...+.+-++...-.|. ...+++|.+.++..|.+. ||+.++.-+.+.+.  ...+....+++
T Consensus        27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~~~~l~  103 (386)
T 3o2t_A           27 VVDLLNQAALITNDSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELLLKLIA  103 (386)
T ss_dssp             HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred             HHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            334443333222247889999999986554554 678899999999998665 99999999888764  34556677888


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHhhC--------Ch----hH---HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         94 PLESLATVEETVVRDKAVESLRLISAQH--------SP----HD---LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~--------~~----~~---~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                      .|..|+.|++..|-..++.+...+....        +.    +.   ....+-..+.++..+.+..+|..+++.+..++-
T Consensus       104 ~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl  183 (386)
T 3o2t_A          104 NLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV  183 (386)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            9999999999888887777766655321        10    11   111233444455666677888888776665432


Q ss_pred             ccCcc------hHHHHHHHHHhhccCCCc-cccc-c-hhhcC--ccchHHHHHHHHHhhcCC--CHHHHHHHHHhhHHHH
Q psy14015        159 RVTAG------VKAELRSHFRNLCQDDTP-MQQG-H-VWECG--SGVKAELRSHFRNLCQDD--TPMVRRAAAGKLGELA  225 (318)
Q Consensus       159 ~~~~~------~~~~l~~~~~~l~~~~~~-~vR~-~-v~~~~--~~~~~~ll~~l~~l~~D~--~~~VR~~aa~~L~~l~  225 (318)
                      ..+..      .+..      .  .+.+- .|.. + +....  +..-..++..+++.+.++  ++-.=-++..+|+.++
T Consensus       184 ~qS~~~~d~~~p~~~------~--~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia  255 (386)
T 3o2t_A          184 TLSPRMADSEIPRRQ------E--HDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA  255 (386)
T ss_dssp             HTSCCCTTCCCCGGG------T--TSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCccccccc------C--CCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence            21110      0000      0  00000 0000 0 00000  012346777778777753  2333345667777776


Q ss_pred             HHhchhhhHhhHHHHHHHhhcCC--------cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHH
Q psy14015        226 KVVEVDYLKTDIIPMFVNLAQDE--------QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ  282 (318)
Q Consensus       226 ~~~~~~~~~~~llp~l~~ll~D~--------~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~  282 (318)
                      ..  ...+...++|++..+--..        ...||++.-..+..+.+.=+.......+...|..
T Consensus       256 k~--RP~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~  318 (386)
T 3o2t_A          256 RQ--RPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVD  318 (386)
T ss_dssp             HH--SGGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHH
T ss_pred             Hh--cHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHH
Confidence            63  2334567888877653221        2357777777777777633222333334444333

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=96.63  E-value=0.0024  Score=65.64  Aligned_cols=170  Identities=14%  Similarity=-0.002  Sum_probs=101.7

Q ss_pred             ccchHHhhhccCchh-HHHHH-HHHHHHHHHhhCChhHHhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHH
Q psy14015         90 CLLPPLESLATVEET-VVRDK-AVESLRLISAQHSPHDLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKA  166 (318)
Q Consensus        90 ~llp~l~~l~~d~~~-~VR~~-a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~  166 (318)
                      .++|.+..+..+.++ +.... |..++..++...-.......++..+.+..+ +++| .|.++...+..++         
T Consensus       760 ~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~---------  829 (997)
T 1vsy_5          760 YVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL---------  829 (997)
T ss_dssp             TTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH---------
Confidence            377878777666654 55555 555566665544333333335555555555 6789 9998877655432         


Q ss_pred             HHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh
Q psy14015        167 ELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA  245 (318)
Q Consensus       167 ~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll  245 (318)
                           |..+.-            +.+..+..+...+..++.|++ .+||..|+..|+.+....+.....+.++..|...+
T Consensus       830 -----f~n~f~------------l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~  892 (997)
T 1vsy_5          830 -----SAELLQ------------LTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL  892 (997)
T ss_dssp             -----HHHTTT------------SCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred             -----HHHHHH------------cCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence                 222111            111234567889999999999 99999999999999876523122235655555544


Q ss_pred             cC---C---------cHHHHHHHHHHHHHHHhhCChh----hhhHhhHHHHHHhccc
Q psy14015        246 QD---E---------QDSVRLLAVEACVSIASLLSQS----DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       246 ~D---~---------~~~VR~aa~~~l~~l~~~l~~~----~~~~~l~p~l~~ll~D  286 (318)
                      ..   .         +-..|-+++-+|+.+...++=.    .-...++..|...+.|
T Consensus       893 ~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~  949 (997)
T 1vsy_5          893 DVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART  949 (997)
T ss_dssp             TTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS
T ss_pred             hhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC
Confidence            22   1         1156777777888888766332    2333444455555555

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=96.56  E-value=0.0031  Score=62.45  Aligned_cols=69  Identities=12%  Similarity=0.148  Sum_probs=35.2

Q ss_pred             hchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhc------cchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015         51 GELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHC------LLPPLESLATVEETVVRDKAVESLRLISAQHS  122 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~------llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  122 (318)
                      +.++|.+..+-+.+...|..++.+|..++.   ++.....      +.+++..++.|++..||.+|+.+|..++...+
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            456666655433222266666666666653   1111111      22345555666666666666666666655433

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.40  E-value=0.21  Score=46.64  Aligned_cols=142  Identities=13%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             hhcCChHHHHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh
Q psy14015         59 ETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA  138 (318)
Q Consensus        59 ~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~  138 (318)
                      ...+-+...++-++..++++-+.+  +...+.-+..+..|+.|++..||..|+..|..++..   +. ...+..++.+|+
T Consensus        36 ~~~kg~~k~K~LaaQ~I~kffk~F--P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~-i~kiaDvL~QlL  109 (507)
T 3u0r_A           36 DGVKGGTKEKRLAAQFIPKFFKHF--PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---EN-LPRVADILTQLL  109 (507)
T ss_dssp             HGGGSCHHHHHHHHHHHHHHGGGC--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TC-HHHHHHHHHHHT
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hh-hhhHHHHHHHHH
Confidence            444444448888888888887655  345556777889999999999999999999999875   22 334667777777


Q ss_pred             cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchh--------hcC-----ccchHHHHHHHHHh
Q psy14015        139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW--------ECG-----SGVKAELRSHFRNL  205 (318)
Q Consensus       139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~--------~~~-----~~~~~~ll~~l~~l  205 (318)
                      +.++..-+..+-..|-.++   ....+..+...|.++... ...+|.++.        .++     ++....+.....+.
T Consensus       110 qtdd~~E~~~V~~sL~sll---k~Dpk~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~  185 (507)
T 3u0r_A          110 QTDDSAEFNLVNNALLSIF---KMDAKGTLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKV  185 (507)
T ss_dssp             TCCCHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHH---hcChHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHH
Confidence            7655433332222222222   122344444455555543 244554321        222     23455677777788


Q ss_pred             hcCCC
Q psy14015        206 CQDDT  210 (318)
Q Consensus       206 ~~D~~  210 (318)
                      ++|-.
T Consensus       186 L~DVT  190 (507)
T 3u0r_A          186 LEDVT  190 (507)
T ss_dssp             TTSCC
T ss_pred             hcccc
Confidence            87755

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.38  E-value=0.028  Score=58.34  Aligned_cols=161  Identities=9%  Similarity=-0.027  Sum_probs=97.9

Q ss_pred             cccchhccchHHhhhccC--chhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCC-----Cchhhhhhhhhh
Q psy14015         84 GPEYVHCLLPPLESLATV--EETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGD-----WFTSRTSACGLF  153 (318)
Q Consensus        84 ~~~~~~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~-----~~~vR~~a~~~l  153 (318)
                      +.+..+.+++.+...+..  .++..++++.-+++.++....++   .+...+++.+..+...+     ...+|.+.+.++
T Consensus       471 ~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vl  550 (1073)
T 3gjx_A          471 YVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIV  550 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHH
Confidence            334444455555443332  34777888888888887766642   23334566666665433     233444444555


Q ss_pred             hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh-
Q psy14015        154 SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-  232 (318)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~-  232 (318)
                      |....        ++..         .|           ..-+.++..+++.+.|.++.|..+|+.+|..++..++... 
T Consensus       551 grY~~--------wl~~---------h~-----------~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv  602 (1073)
T 3gjx_A          551 GQYPR--------FLRA---------HW-----------KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV  602 (1073)
T ss_dssp             HHCHH--------HHHH---------CH-----------HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGT
T ss_pred             hhhHH--------HHHh---------CH-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43211        1100         00           1224456666777889999999999999999999887542 


Q ss_pred             ---------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015        233 ---------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV  272 (318)
Q Consensus       233 ---------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~  272 (318)
                               ..+.++..+.....+=...-.....++++.+....+.+..
T Consensus       603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~  651 (1073)
T 3gjx_A          603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV  651 (1073)
T ss_dssp             SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence                     2344555555555555566667778899999998887653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=96.29  E-value=0.12  Score=54.53  Aligned_cols=218  Identities=8%  Similarity=-0.024  Sum_probs=129.3

Q ss_pred             ccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCc---C---c----------ccch
Q psy14015         25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNV---G---G----------PEYV   88 (318)
Q Consensus        25 ~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~---~---~----------~~~~   88 (318)
                      .+..+|..++..+..|++.-.|+ .|.++++.+.++++.+...+..+...|..+.+.+   .   .          ....
T Consensus       108 ~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~  186 (1204)
T 3a6p_A          108 EENHIKDALSRIVVEMIKREWPQ-HWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNM  186 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence            46889999999999999886664 5789999998887654345555666666554321   0   0          0011


Q ss_pred             hccchHHhhhccC-------------------chhHHHHHHHHHHHHHHhhCChhHHhh---hHHHHHHHhhcCCCchhh
Q psy14015         89 HCLLPPLESLATV-------------------EETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSR  146 (318)
Q Consensus        89 ~~llp~l~~l~~d-------------------~~~~VR~~a~~~l~~l~~~~~~~~~~~---~ilp~~~~l~~d~~~~vR  146 (318)
                      +.+++.+.+++.+                   ++..++..+++++.....-.+...+.+   .+++.+..+++++  .+|
T Consensus       187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~--~lr  264 (1204)
T 3a6p_A          187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQ--ELQ  264 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCT--TTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCH--HHH
Confidence            2355555544433                   234577778887776666555544333   3788888777754  678


Q ss_pred             hhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh--------cCCCHHHHHHHH
Q psy14015        147 TSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC--------QDDTPMVRRAAA  218 (318)
Q Consensus       147 ~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~--------~D~~~~VR~~aa  218 (318)
                      ..|++.|..++.+-...  .+    +..+...               .....+..+....        .|++.++++..+
T Consensus       265 ~~A~ecL~~i~s~~~~~--~~----~~~li~~---------------l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~  323 (1204)
T 3a6p_A          265 LGAAECLLIAVSRKGKL--ED----RKPLMVL---------------FGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC  323 (1204)
T ss_dssp             HHHHHHHHHHHTCCSCH--HH----HGGGGGG---------------GSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCh--hh----HHHHHHH---------------HhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence            89988888776543210  11    1111110               1111122222222        333467777777


Q ss_pred             HhhHHHHHHhc----------hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        219 GKLGELAKVVE----------VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       219 ~~L~~l~~~~~----------~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      +.+..++..+-          .......+++.+..+.++++..|-..+...-..+.+.
T Consensus       324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            77776663321          1122457899999999999888777776655555544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.28  E-value=0.029  Score=58.17  Aligned_cols=126  Identities=10%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             hhCChhHHhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchH
Q psy14015        119 AQHSPHDLEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKA  196 (318)
Q Consensus       119 ~~~~~~~~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~  196 (318)
                      ..+..++....+.+.+.+..++  .+|..+.+++..+|.+.+...+..-+.                          .-.
T Consensus       467 t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~--------------------------~Lp  520 (1073)
T 3gjx_A          467 THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKR--------------------------FLV  520 (1073)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHH--------------------------HHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccc--------------------------hHH
Confidence            3555566677788887765544  359999999999998866555321111                          124


Q ss_pred             HHHHHHHHhhcCC-----CHHHHHHHHHhhHHHHHHhchhh-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        197 ELRSHFRNLCQDD-----TPMVRRAAAGKLGELAKVVEVDY-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       197 ~ll~~l~~l~~D~-----~~~VR~~aa~~L~~l~~~~~~~~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      .+++.+..+++.+     .+.+|..+...+|+..+.+...+ ....++..+...+.|+++.|+.+|+.++..+++.+++.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778877544     46678878889999888775432 34556666667778999999999999999999877664

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=96.08  E-value=0.0092  Score=59.06  Aligned_cols=90  Identities=11%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhh-HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTD-IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV  272 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~-llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~  272 (318)
                      +.++|.+ +.++++++..|..|+.+++.++..-...  ...+. +.+++..++.|++..||.+++.+|.+++..-|.+.+
T Consensus        34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            4456655 5578999999999999999998632211  12333 446788999999999999999999999988887654


Q ss_pred             hH----hhHHHHHHhccc
Q psy14015        273 EQ----LVMPTLRQCSVQ  286 (318)
Q Consensus       273 ~~----~l~p~l~~ll~D  286 (318)
                      ..    .++|.|..+++.
T Consensus       113 ~~l~~~~il~~L~~~l~~  130 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKA  130 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHh
Confidence            33    488888888764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=95.86  E-value=0.32  Score=47.17  Aligned_cols=91  Identities=13%  Similarity=0.039  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC---
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK--TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL---  267 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~--~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l---  267 (318)
                      .+-++.++.+++.++..+|..+.+.|..++..-+.   +.+.  ..-+|.+..+++|+...+|..++..|..++..=   
T Consensus       121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i  200 (651)
T 3grl_A          121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI  200 (651)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence            46689999999999999999999999999976443   2222  246789999999999999999998888888532   


Q ss_pred             ChhhhhHhhHHHHHHhccc
Q psy14015        268 SQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       268 ~~~~~~~~l~p~l~~ll~D  286 (318)
                      .+-...+..++.++.++..
T Consensus       201 QklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          201 QKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHh
Confidence            1112234567888888876

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.73  E-value=0.084  Score=55.63  Aligned_cols=225  Identities=11%  Similarity=0.047  Sum_probs=128.1

Q ss_pred             CchHHHHHHHhcCc--cHHHHHHHHHhHHHHHHhhChHhHhhchhhhhh-hhc-CChHH-HHHHHHHHHcccccC----c
Q psy14015         12 LYPIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQERTRGELIPFLT-ETI-YDEDE-VLLALAEQLGTFTPN----V   82 (318)
Q Consensus        12 l~~i~~l~~~l~~~--~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~-~l~-~D~~~-VR~~aa~~L~~l~~~----~   82 (318)
                      +..+...+....+.  +...|..|-+.|...-..  |+     -.+.+. .+. ...+. ||..++..|.+....    +
T Consensus        10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-----~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l   82 (1204)
T 3a6p_A           10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-----ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM   82 (1204)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-----THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence            33466666666555  667899998888876322  11     112222 233 33344 999999999877632    2


Q ss_pred             Cc---ccchhccchHHhhhcc---CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhh
Q psy14015         83 GG---PEYVHCLLPPLESLAT---VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC  156 (318)
Q Consensus        83 ~~---~~~~~~llp~l~~l~~---d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~  156 (318)
                      ..   ....+.++..+.+...   ++...||.+...++..++..--++.+.+ +++.+.++++. +...+..+..+|..+
T Consensus        83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~-ll~~L~~~~~~-~~~~~e~~L~iL~~L  160 (1204)
T 3a6p_A           83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD-MLIELDTLSKQ-GETQTELVMFILLRL  160 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT-HHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH-HHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence            21   1223445555443321   2468999999999999998743344443 66777777665 334566666666655


Q ss_pred             cccc------CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-------------------CCH
Q psy14015        157 YPRV------TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-------------------DTP  211 (318)
Q Consensus       157 ~~~~------~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-------------------~~~  211 (318)
                      ...+      ....+..+.+.+..                   .-..+++.+.+.+++                   ++.
T Consensus       161 ~Eev~~~~~~~~~r~~~l~~~l~~-------------------~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~  221 (1204)
T 3a6p_A          161 AEDVVTFQTLPPQRRRDIQQTLTQ-------------------NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC  221 (1204)
T ss_dssp             HHHHHTSCCSCHHHHHHHHHHHHH-------------------THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred             HHHHccccchHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence            4321      11111111111110                   112344444444432                   234


Q ss_pred             HHHHHHHHhhHHHHHHhchhhhHh---hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        212 MVRRAAAGKLGELAKVVEVDYLKT---DIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       212 ~VR~~aa~~L~~l~~~~~~~~~~~---~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      .++..+.+++..+...+....+.+   .+++.+..++.++  .+|.+|+++|..+...
T Consensus       222 ~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~--~lr~~A~ecL~~i~s~  277 (1204)
T 3a6p_A          222 RVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQ--ELQLGAAECLLIAVSR  277 (1204)
T ss_dssp             HHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCT--TTHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCH--HHHHHHHHHHHHHHhC
Confidence            577777777776655444333322   4888888888875  4899999999998863

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=95.61  E-value=0.61  Score=40.07  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=58.1

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchH
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPP   94 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~   94 (318)
                      ..++...+......++...++.-+++-.-.|. ...+++|.+..+..|.+. ||+.++.-+.+.+.  ..++....+++.
T Consensus        18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~--~k~~l~~~~l~~   94 (257)
T 3gs3_A           18 VDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK--VKVELLPHVINV   94 (257)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred             HHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            34444444322246667777777765443343 556666666666666544 77777777766553  234455556667


Q ss_pred             HhhhccCchhHHHHHHHHHHHHH
Q psy14015         95 LESLATVEETVVRDKAVESLRLI  117 (318)
Q Consensus        95 l~~l~~d~~~~VR~~a~~~l~~l  117 (318)
                      +..++.|++..|-..++.+...+
T Consensus        95 L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           95 VSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHH
Confidence            77777777776666666555444

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=95.57  E-value=0.19  Score=43.28  Aligned_cols=70  Identities=23%  Similarity=0.270  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                      ...++++-++.+..|++.+||+.++.-+.+.+..  .......+++.+..+++|++..|-+.+..+...+-.
T Consensus        50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~  119 (257)
T 3gs3_A           50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK  119 (257)
T ss_dssp             GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            5577788888899999999999999999888853  234567899999999999999998888877766553

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=94.35  E-value=0.17  Score=51.99  Aligned_cols=191  Identities=9%  Similarity=0.033  Sum_probs=116.3

Q ss_pred             hhhhhhhhcCCh-H-HHHHH-HHHHHcccccCcCcccchhccchHHhhhcc-CchhHHHHHHHHHHHHHHh--h--CChh
Q psy14015         53 LIPFLTETIYDE-D-EVLLA-LAEQLGTFTPNVGGPEYVHCLLPPLESLAT-VEETVVRDKAVESLRLISA--Q--HSPH  124 (318)
Q Consensus        53 llp~l~~l~~D~-~-~VR~~-aa~~L~~l~~~~~~~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~--~--~~~~  124 (318)
                      ++|++..+.++. + +.... +...+..++...-.+.....++..+.+... ++++ +|..++.-+-.+.-  .  ++.+
T Consensus       761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~  839 (997)
T 1vsy_5          761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE  839 (997)
T ss_dssp             TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence            777777666553 2 33333 334455554433344445556666666665 5678 99988776544432  2  2334


Q ss_pred             HHhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhcccc-CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015        125 DLEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPRV-TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF  202 (318)
Q Consensus       125 ~~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l  202 (318)
                      +. ..+...+.+++.|+. ..||..|+..|+-++... ......++...|.+.+....            .. ..+....
T Consensus       840 ~~-~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~------------~~-~~~~~~~  905 (997)
T 1vsy_5          840 EK-NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNK------------YT-SKERQKL  905 (997)
T ss_dssp             HH-HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTS------------SC-HHHHHHH
T ss_pred             HH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcc------------cc-ccccccc
Confidence            33 457888999999999 999999999998776554 21223344344443321100            00 1111100


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHHHhc-----hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        203 RNLCQDDTPMVRRAAAGKLGELAKVVE-----VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~-----~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                           +..-..|.+++-.|+++...+.     |+|+ .+++..+...+.||.+ |+.++-++++.+-.
T Consensus       906 -----~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~-P~~l~~La~~~~~~~~-i~~tvk~tlseFkr  966 (997)
T 1vsy_5          906 -----SKTDIKIHGNVLGLGAIISAFPYVFPLPPWI-PKNLSNLSSWARTSGM-TGNAAKNTISEFKK  966 (997)
T ss_dssp             -----HHHCHHHHHHHHHHHHHHTTCSCCSSCCTHH-HHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred             -----chHHHHHHHHHHHHHHHHhhCCCCCCCCccc-HHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence                 1112678899999999998653     3454 5677778878889877 99998888888764

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=94.19  E-value=0.28  Score=41.13  Aligned_cols=126  Identities=7%  Similarity=-0.061  Sum_probs=82.3

Q ss_pred             HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccchhccchHHhh
Q psy14015         20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLES   97 (318)
Q Consensus        20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~   97 (318)
                      +..+++..+.|.-++.-+......+.     .+-++.+..++.+ +.| +=...+..++.+..     .....+.+.+..
T Consensus        62 ~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~-----~~~~~~~~~i~~  131 (220)
T 2b6c_A           62 AYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVA-----LHLTELPTIFAL  131 (220)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHH-----HSGGGHHHHHHH
T ss_pred             HHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----HChHHHHHHHHH
Confidence            33455667777777777665432222     2346677777755 556 55655555555542     123446678899


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                      .+.|++..+|+.|+..+.....    +.-...+++++..+.+|+.+.||++.+..|..+...
T Consensus       132 W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          132 FYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            9999999999998876543222    222344788888899999999999998888766443

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.98  E-value=0.81  Score=38.24  Aligned_cols=67  Identities=12%  Similarity=-0.051  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~  266 (318)
                      +.+.+.+...++|++.-+|+.++..+-..    ..+...+.+++++..++.|+++.||++.+.+|..+++.
T Consensus       123 ~~~~~~i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          123 TELPTIFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             GGHHHHHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            34567788889999877777666654212    22223466889999999999999999999999988865

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.88  E-value=0.63  Score=42.39  Aligned_cols=69  Identities=19%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015        194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA  264 (318)
Q Consensus       194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~  264 (318)
                      .-.++++.++++..|++.+||+.++.-+.+.+..  .......+++.+..+++|++..|-+.++.+...+-
T Consensus        60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A           60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999988863  22335789999999999999999888887777655

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.57  E-value=1.2  Score=46.28  Aligned_cols=68  Identities=9%  Similarity=-0.041  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhh--cCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015        196 AELRSHFRNLC--QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       196 ~~ll~~l~~l~--~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      +.+.+.+.++.  .++..+||-+|+..|-+...   .   ...+-.+...+-.|++..|+......|..+++.-.+
T Consensus       511 ~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P---~---~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          511 RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKP---S---VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC---C---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCc---C---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            45667777877  45779999999888764321   1   123444555667889999999999999999987655

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=93.03  E-value=0.88  Score=38.35  Aligned_cols=131  Identities=10%  Similarity=0.063  Sum_probs=76.8

Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhc-CCCchh-hhhhhhhhhhhccccCcchHHHHHH
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS-GDWFTS-RTSACGLFSVCYPRVTAGVKAELRS  170 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~-d~~~~v-R~~a~~~l~~~~~~~~~~~~~~l~~  170 (318)
                      .++..|..++..+.|..|+..+......+.++.     ++.+..++. .++|.+ -..|...+|.++..           
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----------  127 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----------  127 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----------
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----------
Confidence            466777777777888888877765544454432     233334433 345542 33333333322111           


Q ss_pred             HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015        171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD  250 (318)
Q Consensus       171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~  250 (318)
                                             ..+.+.+.+...+.|++.-+|+.++..+-..  ..  +.....+++.+..++.|+++
T Consensus       128 -----------------------~p~~~~~~l~~W~~s~~~w~rR~ai~~~l~~--~~--~~d~~~~~~~i~~~~~d~~~  180 (232)
T 3jxy_A          128 -----------------------HPELISAYIPKWIASDNIWLQRAAILFQLKY--KQ--KMDEELLFWIIGQLHSSKEF  180 (232)
T ss_dssp             -----------------------CGGGGGGTHHHHHHSSCHHHHHHHHHTTTTC--GG--GCCHHHHHHHHHHHTTCCCH
T ss_pred             -----------------------CHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--Hh--CCCHHHHHHHHHHhcCCHHH
Confidence                                   0012345667777888866666555544212  11  11234677788889999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14015        251 SVRLLAVEACVSIASL  266 (318)
Q Consensus       251 ~VR~aa~~~l~~l~~~  266 (318)
                      .||++...+|..+++.
T Consensus       181 yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          181 FIQKAIGWVLREYAKT  196 (232)
T ss_dssp             HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998888854

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=92.26  E-value=0.48  Score=40.00  Aligned_cols=127  Identities=11%  Similarity=0.072  Sum_probs=76.8

Q ss_pred             HHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC-ChHH-HHHHH-HHHHcccccCcCcccchhccchHH
Q psy14015         19 IDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY-DEDE-VLLAL-AEQLGTFTPNVGGPEYVHCLLPPL   95 (318)
Q Consensus        19 ~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~-D~~~-VR~~a-a~~L~~l~~~~~~~~~~~~llp~l   95 (318)
                      .+..+++..+.|..++..+....+.+.++     .++.+..++. .+.| +-... ...++.+..     .....+.+.+
T Consensus        67 ~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~-----~~p~~~~~~l  136 (232)
T 3jxy_A           67 RELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFL-----KHPELISAYI  136 (232)
T ss_dssp             HHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHH-----HCGGGGGGTH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHH-----HCHHHHHHHH
Confidence            34446666677877777776432223332     3344444443 3556 43443 344444432     1223367888


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015         96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        96 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~  159 (318)
                      ..++.|++..+|..|+..+......   .+ ...+.+++..+.+|+.+.||++.+..|..+..+
T Consensus       137 ~~W~~s~~~w~rR~ai~~~l~~~~~---~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          137 PKWIASDNIWLQRAAILFQLKYKQK---MD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             HHHHHSSCHHHHHHHHHTTTTCGGG---CC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHhC---CC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988665332211   11 224667777888999999999998887765443

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=91.79  E-value=4.6  Score=33.00  Aligned_cols=71  Identities=13%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCcH--HHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015        212 MVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQD--SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       212 ~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~~--~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D  286 (318)
                      .+|..||..++.++..+|.  ......+.-.+.+.+.||..  ..+-.|+   ..+. .+|++.+...++|.+....++
T Consensus       105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi---~GL~-~lG~~~vr~~llP~l~~~~~~  179 (196)
T 4atg_A          105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGAL---YCLS-ILSKNVVNTVIREHAEEYKRT  179 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHH---HHHH-HHCHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHH---HHHH-HhHHHHHHHhhhcCHHHHHHH
Confidence            8999999999999999986  34566788888888888854  3344333   3333 567788888899999988887

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.07  E-value=1.8  Score=44.91  Aligned_cols=131  Identities=16%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             HHHHHhcC----ccHHHHHHHHHhHHHHHHh-hCh-----HhHhhchhhhhhhhcCC-hHHHHHHHHHHHcccccCcCcc
Q psy14015         17 VLIDELKN----EDVQLRLNSIKKLSTIALA-LGQ-----ERTRGELIPFLTETIYD-EDEVLLALAEQLGTFTPNVGGP   85 (318)
Q Consensus        17 ~l~~~l~~----~~~~~R~~~~~~L~~ia~~-lg~-----~~~~~~llp~l~~l~~D-~~~VR~~aa~~L~~l~~~~~~~   85 (318)
                      .+.+.+++    .++.+|..++-.++.+... +..     ......+...+.+.++. +.+.+..+.++|++++.    +
T Consensus       395 ~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p  470 (1056)
T 1lsh_A          395 YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P  470 (1056)
T ss_dssp             HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G
T ss_pred             HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h
Confidence            34445544    3466788888888888643 221     11233344444433333 33367788888988753    3


Q ss_pred             cchhccchHHhhh---ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhh
Q psy14015         86 EYVHCLLPPLESL---ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS  154 (318)
Q Consensus        86 ~~~~~llp~l~~l---~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~  154 (318)
                      .....+.+++...   ..+....||.+|+.+|..+.... ++.+.+.+++++.+  .+....+|..|+..+-
T Consensus       471 ~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm  539 (1056)
T 1lsh_A          471 NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF  539 (1056)
T ss_dssp             GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence            3444444544332   12223578999999999888543 33344444444432  2235689999977764

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.13  E-value=4.4  Score=32.01  Aligned_cols=76  Identities=11%  Similarity=0.034  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhCChh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D-~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      ++.+..+.+.++..++.|...|..-|-.+..++|...    ...+++.-+.++++. ++..||..+...+...+..|+.+
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5677888888899999999999999999999988632    123455555566654 67799999999999999988765


Q ss_pred             h
Q psy14015        271 D  271 (318)
Q Consensus       271 ~  271 (318)
                      .
T Consensus       131 ~  131 (163)
T 1x5b_A          131 P  131 (163)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=89.29  E-value=3.9  Score=31.45  Aligned_cols=76  Identities=12%  Similarity=0.038  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD  271 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~  271 (318)
                      ++.+..+.+.++..++.+-..|..-|-.+..++|....    ..+++.-+..+++.++..||..+...+...+..|+.+.
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP  120 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            56788888888999999999999999999898886421    23466666666667888999999999999998886653

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=88.69  E-value=2.5  Score=32.27  Aligned_cols=84  Identities=11%  Similarity=0.041  Sum_probs=59.7

Q ss_pred             hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015         44 LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS  122 (318)
Q Consensus        44 lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  122 (318)
                      +|.+ ....++|.|...++|-+| +...++..|..+.         +.+.|.+...+..+|+...-.   .+..+...++
T Consensus        24 ~~~~-~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~   90 (134)
T 3ut4_A           24 LIDN-EIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYW---VIKLMIPYLI   90 (134)
T ss_dssp             CCHH-HHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCC
T ss_pred             CCHH-HHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHH---HHHHHHHcCC
Confidence            4555 456788999999999998 9999999988652         346777777766666655443   3445666776


Q ss_pred             hhHHhhhHHHHHHHhhcCC
Q psy14015        123 PHDLEAHFVPLVQRLASGD  141 (318)
Q Consensus       123 ~~~~~~~ilp~~~~l~~d~  141 (318)
                      .+. ...+.|-+.++++.+
T Consensus        91 ~~~-~~~l~~eL~rl~~~p  108 (134)
T 3ut4_A           91 YPN-KQLVKSELERLSSLE  108 (134)
T ss_dssp             HHH-HHHHHHHHHHHHTCC
T ss_pred             HHH-HHHHHHHHHHHHhCC
Confidence            653 444888889998876

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=85.42  E-value=6.8  Score=32.69  Aligned_cols=78  Identities=12%  Similarity=0.052  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCCh
Q psy14015        195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ  269 (318)
Q Consensus       195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~  269 (318)
                      -++.+..+.+-++..++.|...|..-|..+..+.|...    ...+++..+..+++ .+...||..++..+...+..|..
T Consensus        43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            36778889888999999999999999999999888631    22345555555543 46779999999999999998866


Q ss_pred             hhh
Q psy14015        270 SDV  272 (318)
Q Consensus       270 ~~~  272 (318)
                      +..
T Consensus       123 ~~~  125 (226)
T 3zyq_A          123 EPK  125 (226)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=83.11  E-value=6.6  Score=33.48  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=55.4

Q ss_pred             cchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhH----HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015         86 EYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHD----LEAHFVPLVQRLASGDWFTSRTSACGLFSVCY  157 (318)
Q Consensus        86 ~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~----~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~  157 (318)
                      +..-+++|++..-.++. .+..|-+++..++.+++.-.++-    ....++|...+..+-.+.-.+..|..++.+++
T Consensus        97 ~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           97 HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            45567889988876655 48899999999999997654442    22248999998888788888888888888775

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=83.02  E-value=2.7  Score=32.05  Aligned_cols=93  Identities=11%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             Cch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHHHHHHHHHHHcccccCcCcccch
Q psy14015         12 LYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTPNVGGPEYV   88 (318)
Q Consensus        12 l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~VR~~aa~~L~~l~~~~~~~~~~   88 (318)
                      +.| ++.+++.|||-||.+...++..|...         .+.++|.+.+.+..  +.|.--.+....+++-     ....
T Consensus        29 i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~ywil~~lv~~~~-----~~~~   94 (134)
T 3ut4_A           29 IEPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKYWVIKLMIPYLI-----YPNK   94 (134)
T ss_dssp             HHHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHHHHHHHHGGGCC-----HHHH
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHHHHHHHHHHcCC-----HHHH
Confidence            444 78899999999999988888888773         23577888776643  3343222222223331     2345


Q ss_pred             hccchHHhhhccCc-----hhHHHHHHHHHHHHHH
Q psy14015         89 HCLLPPLESLATVE-----ETVVRDKAVESLRLIS  118 (318)
Q Consensus        89 ~~llp~l~~l~~d~-----~~~VR~~a~~~l~~l~  118 (318)
                      ..+.|.+.+++..+     .++|.+.|-+.|..+.
T Consensus        95 ~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~  129 (134)
T 3ut4_A           95 QLVKSELERLSSLEIINEDIREIVNLSKDYLHFYY  129 (134)
T ss_dssp             HHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHc
Confidence            66778888887653     4677777777776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-70
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-11
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-09
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-08
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-05
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.003
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.004

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  226 bits (576), Expect = 3e-70
 Identities = 211/282 (74%), Positives = 226/282 (80%), Gaps = 32/282 (11%)

Query: 2   ASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI 61
           A++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TI
Sbjct: 1   AAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI 58

Query: 62  YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
           YDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +H
Sbjct: 59  YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118

Query: 122 SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181
           SP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPR                      
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR---------------------- 156

Query: 182 MQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 241
                     S VKAELR +FRNLC DDTPMVRRAAA KLGE AKV+E+D +K++IIPMF
Sbjct: 157 --------VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208

Query: 242 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
            NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ 
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 10/231 (4%)

Query: 62  YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
                V  ALA  +   +P +G    +  LLP   +    E   VR   + +L  ++   
Sbjct: 335 DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394

Query: 122 SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRNLCQDDT 180
               L    +P +  LA    +  R +      +   ++       +L S       D  
Sbjct: 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV 454

Query: 181 PMQQGHVWEC---------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
              +                    A +      +  D   + R      +  L++V   D
Sbjct: 455 YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514

Query: 232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
                ++P  + +A D   +VR    ++   I  +L  S ++  V P L +
Sbjct: 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 6e-09
 Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 29/199 (14%)

Query: 66  EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125
            V LA+ E +      +G   +   L     +        +R+ A  +L+ +  +     
Sbjct: 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476

Query: 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQG 185
             A  +P V  ++    +  R +     +V                   +C  D      
Sbjct: 477 AHATIIPKVLAMSGDPNYLHRMTTLFCINV----------------LSEVCGQDI----- 515

Query: 186 HVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA 245
                       +      +  D    VR   A  L ++  +++   L++++ P+   L 
Sbjct: 516 --------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 567

Query: 246 QDEQDSVRLLAVEACVSIA 264
           QD+   V+  A EA   ++
Sbjct: 568 QDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 87  YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSR 146
            +  +LP ++ L +     V+      +  +S      +   H +PL       +    R
Sbjct: 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVR 380

Query: 147 TSACGLFS-VCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGV---------KA 196
            +       V        +   L      L +D     +  + E    +           
Sbjct: 381 LNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE 440

Query: 197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
           +L S       D    +R AA   L +L +    ++    IIP  + ++ D     R+  
Sbjct: 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTT 500

Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCS 284
           +     ++ +  Q    + ++PT+ + +
Sbjct: 501 LFCINVLSEVCGQDITTKHMLPTVLRMA 528

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 23  KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPN 81
            +    +R  +   L  +    G+E     +IP +     D +    +     +   +  
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510

Query: 82  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS 139
            G       +LP +  +A      VR    +SL+ I        L++   P++++L  
Sbjct: 511 CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 568

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 39/283 (13%), Positives = 76/283 (26%), Gaps = 29/283 (10%)

Query: 1    MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
            +  + +     +  + +L   + ++   L            +A        E    + + 
Sbjct: 759  LVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF 818

Query: 61   IYDEDE----------VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKA 110
            I D              LL+L E +G      G  E    +L    S        V+  A
Sbjct: 819  IQDVKNSRSTDSIRLLALLSLGE-VGHHIDLSGQLELKSVILEAFSS----PSEEVKSAA 873

Query: 111  VESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSV---CYPRVTAGVKAE 167
              +L  IS  + P      ++P V +  +            L  +               
Sbjct: 874  SYALGSISVGNLPE-----YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928

Query: 168  LRSHFRNLCQDDTPMQQGHVWEC----GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 223
            + +     C+      +  V EC           L    +      +   R +    +  
Sbjct: 929  IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKF 988

Query: 224  LAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
                       L  + I  F+   +D   +VR +A+    S A
Sbjct: 989  TISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKT---DIIPMFVNLAQ 246
           C   +   +    +   ++     R AA    G + +  E   LK      +P  + L +
Sbjct: 358 CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 417

Query: 247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
           D    VR  A      I  LL ++ +  + +  L QC
Sbjct: 418 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 454

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 16/221 (7%)

Query: 53  LIPFLTETIYDEDEVLLALAEQLGTFTPNVGG----PEYVHCLLPPLESLATV--EETVV 106
           L   +      + + LL L + +GT   +VG     PEY+  L+PPL     +  +E   
Sbjct: 521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD 580

Query: 107 RDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTS-ACGLFSVCYPRVTAGVK 165
               +E L  + A         +  P+ QR  +    T   +         Y        
Sbjct: 581 LFPLLECLSSV-ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM 639

Query: 166 AELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 225
                    L +      +  V          + +      QD  P VR+++   LG+L 
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARS------NILTLMYQCMQDKMPEVRQSSFALLGDLT 693

Query: 226 KVVEVDYLK--TDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
           K           D +P+       E  SV   A  A   I+
Sbjct: 694 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS 734

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 8/57 (14%)

Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
            L  D   + R ++A  L              D + + +    D+    R +     
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFIL 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.93
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.63
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.49
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.44
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.43
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.37
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.37
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.36
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.36
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.35
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.33
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.32
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.28
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.25
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.24
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.13
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.12
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.11
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.11
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.73
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.63
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.58
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.43
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.57
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.56
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.37
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	93.65
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	93.14
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	92.3

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=281.41  Aligned_cols=293  Identities=59%  Similarity=0.869  Sum_probs=270.5

Q ss_pred             CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCccc
Q psy14015          7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPE   86 (318)
Q Consensus         7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~   86 (318)
                      .+|++|.||+.+++.|+++++.+|..+++.|+.++..+|++.++++++|++.++++|+++|+.+++++|+.++..+|+++
T Consensus         4 ~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~   83 (588)
T d1b3ua_           4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             CcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Confidence            57899999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA  166 (318)
Q Consensus        87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~  166 (318)
                      ..+.++|.+..++.+++..||.+|++++..++...+++.+...+.|++.++.+++++..|.+|+.+++.++.+.+...+.
T Consensus        84 ~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~  163 (588)
T d1b3ua_          84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999999999988888888


Q ss_pred             HHHHHHHhhccCCCcccccchh----hc----C-ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015        167 ELRSHFRNLCQDDTPMQQGHVW----EC----G-SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI  237 (318)
Q Consensus       167 ~l~~~~~~l~~~~~~~vR~~v~----~~----~-~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l  237 (318)
                      ++...+..+++|..|.||+...    .+    + +.....++|.+..+++|+++.||..++.+++.++..++.+.....+
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i  243 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHH
Confidence            8888999999999999998421    11    1 1345678999999999999999999999999999999988777889


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      +|.+..+++|++|.||.+++.+++.++..++++...+.++|.+..+++|          ++++||..+++..
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d----------~~~~vr~~a~~~l  305 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD----------CEAEVRAAASHKV  305 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC----------SSHHHHHHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhc----------cchHHHHHHHHHH
Confidence            9999999999999999999999999999999988778899999999999          8999998887654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-25  Score=213.61  Aligned_cols=285  Identities=16%  Similarity=0.215  Sum_probs=206.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchh
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVH   89 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~   89 (318)
                      ++.+...++++++.+|..+++.++.++..++...    ..++++|.+....+|.++ ||..++..+..++..+|.....+
T Consensus       283 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~  362 (588)
T d1b3ua_         283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE  362 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHH
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHH
Confidence            4456677788888888888888888887766432    356788999888888877 99999999998888888777778


Q ss_pred             ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-hHHHH
Q psy14015         90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-VKAEL  168 (318)
Q Consensus        90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l  168 (318)
                      .++|.+..++.|+++.||..++.++..+....+.....+.++|.+.++.+|++|++|..++..++.+...++.. ....+
T Consensus       363 ~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l  442 (588)
T d1b3ua_         363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL  442 (588)
T ss_dssp             HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHH
Confidence            88999999999999999999999999999888887778889999999999999999999998888776555432 22333


Q ss_pred             HHHHHhhccCCCcccccc-hh-------hcCc-cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHH
Q psy14015        169 RSHFRNLCQDDTPMQQGH-VW-------ECGS-GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP  239 (318)
Q Consensus       169 ~~~~~~l~~~~~~~vR~~-v~-------~~~~-~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp  239 (318)
                      ...+..+..|....||.. +.       ..++ ...+.++|.+..+.+|++|.+|.+++.+++.++..++.+.+.+.++|
T Consensus       443 ~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp  522 (588)
T d1b3ua_         443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP  522 (588)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            344445555555556642 11       1121 12345666666666677777777777777777766666666666777


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      .+.++++|+.+.||.+++.++..+...++++...+.+.|.+.++++|          ++++||..+-++.
T Consensus       523 ~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D----------~d~dVr~~A~~al  582 (588)
T d1b3ua_         523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQD----------QDVDVKYFAQEAL  582 (588)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTC----------SSHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCC----------CCHHHHHHHHHHH
Confidence            77777777777777777777777766666666666667777777777          7777776655543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4.3e-15  Score=128.01  Aligned_cols=248  Identities=16%  Similarity=0.092  Sum_probs=177.3

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP   93 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp   93 (318)
                      ...+++.|+|+++.+|..+++.|..+    |.+    ..+|.+.++++|+++ ||..++..|+.+....+   .....++
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~----~~~----~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~   89 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLR----GGQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---CEDNVFN   89 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHH----CCH----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---THHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhh----CCH----hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cccchHH
Confidence            45788999999999999999999886    433    467888899999888 99999999998854222   2233344


Q ss_pred             -HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015         94 -PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF  172 (318)
Q Consensus        94 -~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~  172 (318)
                       ++..+++|+++.||..|+.++..++...+.  ....+++.+....+|+.+.+|..++..++.+.....       ...+
T Consensus        90 ~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~-------~~~l  160 (276)
T d1oyza_          90 ILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT-------IPLL  160 (276)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CC-------HHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHccccch--hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHH-------HHHH
Confidence             445568899999999999999998865422  234578888888999999999999888876533211       1223


Q ss_pred             HhhccCCCcccccchh---hcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCc
Q psy14015        173 RNLCQDDTPMQQGHVW---ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ  249 (318)
Q Consensus       173 ~~l~~~~~~~vR~~v~---~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~  249 (318)
                      ..+..+..+.+|....   ...........+.+...+.|+++.+|..++.+++.+..        ...+|.+...++|++
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L~~~l~d~~  232 (276)
T d1oyza_         161 INLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCDELKKNT  232 (276)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHHHHHTSSS
T ss_pred             HHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHHHHHhCChH
Confidence            3444444444333111   01112235567788889999999999999999887642        346777778888875


Q ss_pred             HHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       250 ~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                        ||..++.+++.++    .    ...+|.+..++.+         .++++||..++++.
T Consensus       233 --vr~~a~~aL~~ig----~----~~~~~~L~~~l~~---------~~d~~vr~~A~~~L  273 (276)
T d1oyza_         233 --VYDDIIEAAGELG----D----KTLLPVLDTMLYK---------FDDNEIITSAIDKL  273 (276)
T ss_dssp             --CCHHHHHHHHHHC----C----GGGHHHHHHHHTT---------SSCCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcC----C----HHHHHHHHHHHcc---------CCCHHHHHHHHHHH
Confidence              8999999998875    2    3478889887776         04678999888653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.6e-13  Score=120.82  Aligned_cols=271  Identities=15%  Similarity=0.128  Sum_probs=180.1

Q ss_pred             hHHHHHHHhcC--ccHHHHHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCC--hHH-HHHHHHHHHcccccCcCc-
Q psy14015         14 PIAVLIDELKN--EDVQLRLNSIKKLSTIALALGQER---TRGELIPFLTETIYD--EDE-VLLALAEQLGTFTPNVGG-   84 (318)
Q Consensus        14 ~i~~l~~~l~~--~~~~~R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D--~~~-VR~~aa~~L~~l~~~~~~-   84 (318)
                      .+..+...+.+  .++..|..++..+..+....++..   ....+++.+.+.+.+  .+. ||..+.+.+..+...... 
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  207 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  207 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence            35666777754  445678888899988876655432   345567777766643  334 999999999888764432 


Q ss_pred             ---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         85 ---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        85 ---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                         ......+.+.+..++.++++.+|..+.+++..+++..+..   .+...+.+.+....+++...+|..++..+..+..
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence               2233457778888899999999999999999999876542   2233355555666677777888888777665432


Q ss_pred             cc--------------------CcchH----HHHHHHHHhhcc-------CCCcccccc--------hhhcCccchHHHH
Q psy14015        159 RV--------------------TAGVK----AELRSHFRNLCQ-------DDTPMQQGH--------VWECGSGVKAELR  199 (318)
Q Consensus       159 ~~--------------------~~~~~----~~l~~~~~~l~~-------~~~~~vR~~--------v~~~~~~~~~~ll  199 (318)
                      ..                    .....    ..+...+.+...       +....+|..        ....++.....++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~  367 (458)
T d1ibrb_         288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL  367 (458)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHH
Confidence            10                    00011    111111111111       111123321        0123344566788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh-Hh
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE-QL  275 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~-~~  275 (318)
                      +.+.+.++|++|.+|.+++.+|+.++...+.+   .....++|.+..+++|+++.||.+|+.+++++++.++..... .+
T Consensus       368 ~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~  447 (458)
T d1ibrb_         368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  447 (458)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhH
Confidence            88889999999999999999999998755433   235679999999999999999999999999999998765433 34


Q ss_pred             hHHHHHHhc
Q psy14015        276 VMPTLRQCS  284 (318)
Q Consensus       276 l~p~l~~ll  284 (318)
                      +.|.+..++
T Consensus       448 l~~ll~~ll  456 (458)
T d1ibrb_         448 LAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555554444

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=125.34  Aligned_cols=281  Identities=16%  Similarity=0.046  Sum_probs=191.1

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHH-HHHHHHHHHcccccCcCc---ccchhc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDE-VLLALAEQLGTFTPNVGG---PEYVHC   90 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~-VR~~aa~~L~~l~~~~~~---~~~~~~   90 (318)
                      .++..+.+++.. |..++..+..++....+...+.+++|.+.+.+.+  ..+ ++..+...++.+......   ......
T Consensus        93 ~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  171 (458)
T d1ibrb_          93 YVLQTLGTETYR-PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  171 (458)
T ss_dssp             HHHHHTTCCCSS-SCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHH
T ss_pred             HHHhccCCCcHH-HHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHH
Confidence            355666666654 4456777888877655555678899999877654  334 888888888877654433   223455


Q ss_pred             cchHHhhhccC--chhHHHHHHHHHHHHHHhhCCh----hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015         91 LLPPLESLATV--EETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        91 llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~----~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      +++.+...+.+  .+..||..|+.++..+......    +.....+.+.+..+.+++++.+|..++..++.++.......
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            67777666543  4578999999999999876644    23334577788888999999999999888887654432211


Q ss_pred             H----HHHHHHHHhhccCCCcccccchh------------------h----------cC----ccchHHHHHHHHHhhc-
Q psy14015        165 K----AELRSHFRNLCQDDTPMQQGHVW------------------E----------CG----SGVKAELRSHFRNLCQ-  207 (318)
Q Consensus       165 ~----~~l~~~~~~l~~~~~~~vR~~v~------------------~----------~~----~~~~~~ll~~l~~l~~-  207 (318)
                      .    ..+...+.....+..+.+|....                  .          ..    ....+.+.|.+.+... 
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            1    10111111112222222222000                  0          00    0123455666665542 


Q ss_pred             ------CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHH
Q psy14015        208 ------DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMP  278 (318)
Q Consensus       208 ------D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p  278 (318)
                            |.++.+|.++...+..++..+|.+ +...++|.+...++|++|.+|.+++.+++.+++..+++.   ....++|
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~  410 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP  410 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHH
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Confidence                  456789999999999999999865 457899999999999999999999999999997665543   3456999


Q ss_pred             HHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        279 TLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       279 ~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      .+.++++|          +.+.||..+....
T Consensus       411 ~l~~~l~d----------~~~~VR~~a~~~l  431 (458)
T d1ibrb_         411 TLIELMKD----------PSVVVRDTAAWTV  431 (458)
T ss_dssp             HHHHGGGC----------SCHHHHHHHHHHH
T ss_pred             HHHHHhCC----------CCHHHHHHHHHHH
Confidence            99999999          9999998887553

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.3e-13  Score=136.62  Aligned_cols=258  Identities=13%  Similarity=0.146  Sum_probs=190.1

Q ss_pred             chHHHHHHHhcCccHHHHHHHHHhHHHHHHh--h-ChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015         13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALA--L-GQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV   88 (318)
Q Consensus        13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~--l-g~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~   88 (318)
                      +.|..+++.++|.|+..|.+++..|......  + ..+.....+++.+.++++|.++ ||..|++.|+.++..++.+ ..
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~-~~   81 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QV   81 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh-hH
Confidence            3578899999999999999999888776432  1 1223456789999999999877 9999999999998876643 34


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--------HHhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccc
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--------DLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPR  159 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--------~~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~  159 (318)
                      ..+++.+...+.+++..+|..+..++..+...++..        .+...+++.+..... .+++.+|..++..++.+...
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            556676666667778889999988888887766431        233345555555443 45678888888877765544


Q ss_pred             cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHH
Q psy14015        160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP  239 (318)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp  239 (318)
                      .+...               .            .....+++.+...++|+++.||+.|+.+++.++..++.+.....+-.
T Consensus       162 ~g~~l---------------~------------~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~  214 (1207)
T d1u6gc_         162 QGGLL---------------V------------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH  214 (1207)
T ss_dssp             TCSSC---------------T------------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHH
T ss_pred             hhHhh---------------H------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            33211               0            13466888999999999999999999999999998887655344444


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      .+..+.++.++.+|..++.+++.++...|...  ....++|.+...+++          +++++|..+.+.
T Consensus       215 ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~----------~~~~~r~~al~~  275 (1207)
T d1u6gc_         215 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV----------DDDELREYCIQA  275 (1207)
T ss_dssp             HHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS----------CCTTTHHHHHHH
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcC----------ccHHHHHHHHHH
Confidence            66677788899999999999999999887753  235699999999999          888888776643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.43  E-value=9.1e-15  Score=123.97  Aligned_cols=182  Identities=21%  Similarity=0.176  Sum_probs=130.8

Q ss_pred             HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh
Q psy14015         20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL   98 (318)
Q Consensus        20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l   98 (318)
                      ++|.++.+++|..+++.       .+        +..|..+++|+++ ||.+++..|+               .+.+..+
T Consensus        49 ~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp---------------~~~L~~L   98 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRLP---------------REQLSAL   98 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGGT
T ss_pred             HHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHcC---------------HHHHHHH
Confidence            46778888998665432       11        3455678999888 9999997754               1457888


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccC
Q psy14015         99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD  178 (318)
Q Consensus        99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~  178 (318)
                      +.|++..||..++..+       +.+        .+..+++|++|.||..++..++.              ..+..+..|
T Consensus        99 ~~D~d~~VR~~aa~~l-------~~~--------~L~~Ll~D~d~~VR~~aa~~~~~--------------~~L~~L~~D  149 (233)
T d1lrva_          99 MFDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRIPP--------------GRLFRFMRD  149 (233)
T ss_dssp             TTCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHSCG--------------GGGGGTTTC
T ss_pred             hcCCChhHHHHHHhcc-------CHH--------HHHHHhcCCCHHHHHHHHhccch--------------hHHHHHhcC
Confidence            8999999999987653       222        24457899999999998775431              123456667


Q ss_pred             CCcccccchhh-cCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHH
Q psy14015        179 DTPMQQGHVWE-CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAV  257 (318)
Q Consensus       179 ~~~~vR~~v~~-~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~  257 (318)
                      ..+.||..+.. ++       .+.+..+++|+++.||..++.+++       .        |.+..+++|++|.||.+++
T Consensus       150 ~d~~VR~~aA~~~~-------~~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~d~~VR~aaa  207 (233)
T d1lrva_         150 EDRQVRKLVAKRLP-------EESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDPDWTVRLAAV  207 (233)
T ss_dssp             SCHHHHHHHHHHSC-------GGGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHhcC-------HHHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCCCHHHHHHHH
Confidence            77777764321 11       255778899999999999988764       2        3466789999999999987


Q ss_pred             HHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        258 EACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       258 ~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      +.+                .+.+++.|.|          ++++||..++++
T Consensus       208 e~~----------------~~~ll~~L~D----------~d~~VR~aA~~~  232 (233)
T d1lrva_         208 EHA----------------SLEALRELDE----------PDPEVRLAIAGR  232 (233)
T ss_dssp             HHS----------------CHHHHHHCCC----------CCHHHHHHHHCC
T ss_pred             Hhc----------------cHHHHHHhCC----------CCHHHHHHHHHh
Confidence            532                2446778899          999999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-12  Score=131.47  Aligned_cols=284  Identities=12%  Similarity=0.105  Sum_probs=198.4

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc----cc---
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----PE---   86 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~~---   86 (318)
                      +..++..|+|+++.+|..+++.|+.+...++++ ....+++.+...+.++++ +|..++..|..+...++.    ..   
T Consensus        47 ~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~-~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~  125 (1207)
T d1u6gc_          47 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  125 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh-hHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHH
Confidence            778889999999999999999999998888766 557788888766655544 888888887766543321    11   


Q ss_pred             -chhccchHHhhh-ccCchhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         87 -YVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        87 -~~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                       ....+++.+... ...++..+|..|+..+..+...++.  ......+++.+...++++.+.+|..|+..++.+....+.
T Consensus       126 ~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~  205 (1207)
T d1u6gc_         126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  205 (1207)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH
Confidence             123344444433 3455788999999999999887764  334456888888888999999999999999988887765


Q ss_pred             chHH-HHHHHHHhhccCCCcccccchh--------hcCc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch
Q psy14015        163 GVKA-ELRSHFRNLCQDDTPMQQGHVW--------ECGS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV  230 (318)
Q Consensus       163 ~~~~-~l~~~~~~l~~~~~~~vR~~v~--------~~~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~  230 (318)
                      ..-. -+...+..+..+....+|+...        ..+.   .....++|.+.+.+++++.++|..+..++..++..++.
T Consensus       206 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         206 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            4322 2223344555555555554211        1111   23367899999999999999999999999999887654


Q ss_pred             hh--hHhhHHHHHHH-------------------------------------hhcCCcHHHHHHHHHHHHHHHhhCChh-
Q psy14015        231 DY--LKTDIIPMFVN-------------------------------------LAQDEQDSVRLLAVEACVSIASLLSQS-  270 (318)
Q Consensus       231 ~~--~~~~llp~l~~-------------------------------------ll~D~~~~VR~aa~~~l~~l~~~l~~~-  270 (318)
                      +.  ....+++.+..                                     ...|.+|.+|.+++..+..+....+.. 
T Consensus       286 ~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l  365 (1207)
T d1u6gc_         286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  365 (1207)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            31  12223332211                                     235778999999999999998776653 


Q ss_pred             -hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        271 -DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       271 -~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                       ...+.++|.+...++|          ..++||..+++..
T Consensus       366 ~~~~~~~~~~L~~~l~d----------~~~~vr~~~~~~l  395 (1207)
T d1u6gc_         366 PEFYKTVSPALISRFKE----------REENVKADVFHAY  395 (1207)
T ss_dssp             HHHHTTTHHHHHSTTSC----------SSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC----------CchHHHHHHHHHH
Confidence             3445699999999999          8889998887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=3.4e-12  Score=109.40  Aligned_cols=220  Identities=15%  Similarity=0.025  Sum_probs=154.6

Q ss_pred             hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015         51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH  129 (318)
Q Consensus        51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  129 (318)
                      +-..+.|.++++|+++ ||..++..|+.+..        +..+|.+..+++|+++.||..|+.+|..+......+   ..
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~   86 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DN   86 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cc
Confidence            3445666788899887 99999999998742        346789999999999999999999998876543322   22


Q ss_pred             HHH-HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhc
Q psy14015        130 FVP-LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQ  207 (318)
Q Consensus       130 ilp-~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~  207 (318)
                      ..+ ++..+++|+++.+|..++..++.+....+. ....+...+.....|..+.||.. +..++.......++.+..++.
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~  165 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK  165 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch-hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhcc
Confidence            233 345567899999999999999887654332 22344455666677777777753 222333333455678888888


Q ss_pred             CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccc
Q psy14015        208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQI  287 (318)
Q Consensus       208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~  287 (318)
                      +.++.+|..+...++.+...      .....+.+...+.|+++.+|..+..+++.+.    .    ...+|.+...+.| 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~----~~~~~~L~~~l~d-  230 (276)
T d1oyza_         166 DPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVLCDELKK-  230 (276)
T ss_dssp             CSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHHHHHHTS-
T ss_pred             cccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhh----h----hhhHHHHHHHhCC-
Confidence            89999998888777654321      1346677778889999999999888876543    2    3467888888887 


Q ss_pred             ccccccCCCCCCchhhHHhhh
Q psy14015        288 VDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       288 ~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                               +  +||..++..
T Consensus       231 ---------~--~vr~~a~~a  240 (276)
T d1oyza_         231 ---------N--TVYDDIIEA  240 (276)
T ss_dssp             ---------S--SCCHHHHHH
T ss_pred             ---------h--HHHHHHHHH
Confidence                     4  478777654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.8e-13  Score=134.08  Aligned_cols=243  Identities=16%  Similarity=0.159  Sum_probs=172.6

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChH--hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc----cch
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQE--RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP----EYV   88 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~--~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~----~~~   88 (318)
                      ..+....+++++.+|..+++.|..+.......  .....+++++....+|+++ ||..+++.+..+++.-...    ...
T Consensus       216 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l  295 (888)
T d1qbkb_         216 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL  295 (888)
T ss_dssp             HHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTST
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34555667888999999999988875433221  0234577777777777766 9999998887776421000    011


Q ss_pred             hccchHHhhhc------------------------------------------------------------cCchhHHHH
Q psy14015         89 HCLLPPLESLA------------------------------------------------------------TVEETVVRD  108 (318)
Q Consensus        89 ~~llp~l~~l~------------------------------------------------------------~d~~~~VR~  108 (318)
                      ..++|.+....                                                            .+.++.+|.
T Consensus       296 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  375 (888)
T d1qbkb_         296 PKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRK  375 (888)
T ss_dssp             TTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHH
T ss_pred             HHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHH
Confidence            11222111100                                                            001235789


Q ss_pred             HHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchh
Q psy14015        109 KAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW  188 (318)
Q Consensus       109 ~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~  188 (318)
                      .|..++..+++.++.+ +...++|.+.+.+++++|..|.+|+..||.+.....+...                       
T Consensus       376 ~a~~~L~~l~~~~~~~-il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~-----------------------  431 (888)
T d1qbkb_         376 CSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-----------------------  431 (888)
T ss_dssp             HHHHHSTTTTTTCCSS-SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHT-----------------------
T ss_pred             HHHHHHhhHhhhhHHH-HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhc-----------------------
Confidence            9998888888777654 4566899999999999999999999998876544322111                       


Q ss_pred             hcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015        189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS  265 (318)
Q Consensus       189 ~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~  265 (318)
                          ..-.+++|.+.+.++|+++.||..++.++|+++..+..+   .....+++.+...+.|+++.||.+++.++..+.+
T Consensus       432 ----~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         432 ----PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             ----TTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             ----ccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                123678999999999999999999999999999876543   2345688888899999999999999999999998


Q ss_pred             hCChh--hhhHhhHHHHHHhccc
Q psy14015        266 LLSQS--DVEQLVMPTLRQCSVQ  286 (318)
Q Consensus       266 ~l~~~--~~~~~l~p~l~~ll~D  286 (318)
                      ..++.  .....+++.+..++++
T Consensus       508 ~~~~~l~p~~~~il~~l~~~l~~  530 (888)
T d1qbkb_         508 EACTELVPYLAYILDTLVFAFSK  530 (888)
T ss_dssp             HHTTSSGGGHHHHHHHHHHHTTT
T ss_pred             HhhhhhhhHHHHHHHHHHHHHhh
Confidence            77664  2345688888888887

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.6e-11  Score=121.20  Aligned_cols=272  Identities=17%  Similarity=0.090  Sum_probs=180.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH--hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc---ch
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE--RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE---YV   88 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~--~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~---~~   88 (318)
                      ++.+.+.+++++|..|..++..|+.++..+...  ....+++|++...++|+++ ||..++..|++++..+....   +.
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~  476 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL  476 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHT
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            455567788999999999999999886432211  1346788999999999888 99999999999987554322   33


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc---
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG---  163 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~---  163 (318)
                      +.+++.+...+.|+++.||.+|..++..+.+..+..  .+...+++.+...+++.....+..+...++.+.......   
T Consensus       477 ~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~  556 (888)
T d1qbkb_         477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK  556 (888)
T ss_dssp             TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCS
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccc
Confidence            456666667778889999999999999998766542  233345555555555554444444433333322211110   


Q ss_pred             --hHHH---------------------HHHHHHhhccCCCccccc-----------------------------------
Q psy14015        164 --VKAE---------------------LRSHFRNLCQDDTPMQQG-----------------------------------  185 (318)
Q Consensus       164 --~~~~---------------------l~~~~~~l~~~~~~~vR~-----------------------------------  185 (318)
                        .-..                     +.+.+..++...+..+..                                   
T Consensus       557 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  636 (888)
T d1qbkb_         557 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK  636 (888)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT
T ss_pred             hHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhH
Confidence              0000                     001111111100000000                                   


Q ss_pred             ----c-------hh-hcCccc-----hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhc
Q psy14015        186 ----H-------VW-ECGSGV-----KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQ  246 (318)
Q Consensus       186 ----~-------v~-~~~~~~-----~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~  246 (318)
                          .       +. .+++..     ...+++.+...++|.++.||..+...+|.++..++..  ...+.++|.+...++
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~  716 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN  716 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence                0       00 011111     1236778888899999999999999999999887764  245679999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccc
Q psy14015        247 DEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D  286 (318)
                      ++.+.|+..++.+++.++...|++.  ....+++.+.+.+++
T Consensus       717 ~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~  758 (888)
T d1qbkb_         717 PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR  758 (888)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcC
Confidence            9999999999999999999887652  335688899999987

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.7e-11  Score=118.70  Aligned_cols=282  Identities=12%  Similarity=0.033  Sum_probs=199.1

Q ss_pred             HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcc--cchhcc
Q psy14015         16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGP--EYVHCL   91 (318)
Q Consensus        16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~--~~~~~l   91 (318)
                      ..++..+.+++..+|..++..++.++....|+..|++++|.+.+.+.+ +.+ +|.++...|..+++..+..  .....+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            345678889999999999999999988766655678999999887765 345 8889999999887655431  112222


Q ss_pred             ch----HHhhhc-cCchhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015         92 LP----PLESLA-TVEETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA  162 (318)
Q Consensus        92 lp----~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~  162 (318)
                      .+    ++..+. .+.+..||..|+.++..+...++..    .....+++.+.+..+++++.+|..++..+..++....+
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22    233332 4557899999999999998877542    23445777788888999999999999998887665544


Q ss_pred             chHHHHHHHH----HhhccCCCcccccchh------------------hcCc----------cchHHHHHHHHHhhc---
Q psy14015        163 GVKAELRSHF----RNLCQDDTPMQQGHVW------------------ECGS----------GVKAELRSHFRNLCQ---  207 (318)
Q Consensus       163 ~~~~~l~~~~----~~l~~~~~~~vR~~v~------------------~~~~----------~~~~~ll~~l~~l~~---  207 (318)
                      .....+...+    .....+..+.+|....                  ....          ....+++|.+...+.   
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~  337 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333222211    2222334444443100                  0000          112345666665543   


Q ss_pred             ----CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHH
Q psy14015        208 ----DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTL  280 (318)
Q Consensus       208 ----D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l  280 (318)
                          |+.+.+|..+..++..++...|.+. ...+.+.+.....+++|..|.++..+++.+....++..   ..+.++|.+
T Consensus       338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  416 (861)
T d2bpta1         338 EDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence                3567899999999999999988654 57788899999999999999999999999988777654   335689999


Q ss_pred             HHhccccccccccCCCCCCchhhHHhhh
Q psy14015        281 RQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       281 ~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ..++.|          +.+.||..+...
T Consensus       417 ~~~l~d----------~~~~vr~~a~~~  434 (861)
T d2bpta1         417 LNLMND----------QSLQVKETTAWC  434 (861)
T ss_dssp             HHGGGC----------SCHHHHHHHHHH
T ss_pred             HHHhcC----------cchhhhhHHHHH
Confidence            999999          888888776643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.33  E-value=5.9e-14  Score=118.87  Aligned_cols=168  Identities=14%  Similarity=0.114  Sum_probs=119.5

Q ss_pred             hhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH
Q psy14015         58 TETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR  136 (318)
Q Consensus        58 ~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~  136 (318)
                      ..++.|+++ ||..+++...               ...+..|++|+++.||..|+..|       +.        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~a~---------------~~~L~~Ll~D~d~~VR~~AA~~L-------p~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHhcCC---------------HHHHHHHhcCCCHHHHHHHHHHc-------CH--------HHHHH
Confidence            357788887 9987774311               23567889999999999997643       32        23556


Q ss_pred             hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHH
Q psy14015        137 LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRA  216 (318)
Q Consensus       137 l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~  216 (318)
                      |.+|+++.||..++..++.              ..+..+..|.++.||..+..-      .-.+.+..+++|+++.||+.
T Consensus        98 L~~D~d~~VR~~aa~~l~~--------------~~L~~Ll~D~d~~VR~~aa~~------~~~~~L~~L~~D~d~~VR~~  157 (233)
T d1lrva_          98 LMFDEDREVRITVADRLPL--------------EQLEQMAADRDYLVRAYVVQR------IPPGRLFRFMRDEDRQVRKL  157 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSCT--------------GGGGGGTTCSSHHHHHHHHHH------SCGGGGGGTTTCSCHHHHHH
T ss_pred             HhcCCChhHHHHHHhccCH--------------HHHHHHhcCCCHHHHHHHHhc------cchhHHHHHhcCCCHHHHHH
Confidence            7899999999999876531              224456677777777643210      01244667889999999998


Q ss_pred             HHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCC
Q psy14015        217 AAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNN  296 (318)
Q Consensus       217 aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~  296 (318)
                      ++.+++       .        +.+..+++|+++.||..++..+       +.        |.+..+++|          
T Consensus       158 aA~~~~-------~--------~~L~~l~~D~d~~VR~~aa~~L-------~~--------~~L~~l~~D----------  197 (233)
T d1lrva_         158 VAKRLP-------E--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD----------  197 (233)
T ss_dssp             HHHHSC-------G--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC----------
T ss_pred             HHHhcC-------H--------HHHHHHccCCCHHHHHHHHHhc-------Cc--------HHHHHHHhC----------
Confidence            886543       2        3466888999999999988654       22        567889999          


Q ss_pred             CCCchhhHHhhhhhhhhhh
Q psy14015        297 EFHPLELHVISATTLRLMR  315 (318)
Q Consensus       297 ~~~~Vr~~~i~~~~~~~~~  315 (318)
                      +++.||..+++++...++.
T Consensus       198 ~d~~VR~aaae~~~~~ll~  216 (233)
T d1lrva_         198 PDWTVRLAAVEHASLEALR  216 (233)
T ss_dssp             SSHHHHHHHHHHSCHHHHH
T ss_pred             CCHHHHHHHHHhccHHHHH
Confidence            9999999999887655543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.7e-10  Score=104.89  Aligned_cols=297  Identities=12%  Similarity=0.089  Sum_probs=187.2

Q ss_pred             CCCCCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---Hh-HhhchhhhhhhhcCC-hHH-HHHHHHHHH
Q psy14015          2 ASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ER-TRGELIPFLTETIYD-EDE-VLLALAEQL   75 (318)
Q Consensus         2 ~~~~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~-~~~~llp~l~~l~~D-~~~-VR~~aa~~L   75 (318)
                      |.--|..|..-.-|..+++.++++++..+..++..|..+.+.-..   +. ....++|.|.+++.+ +++ ||..++..|
T Consensus         2 ~~~~~~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L   81 (434)
T d1q1sc_           2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL   81 (434)
T ss_dssp             CCCCSTTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CccccccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHH
Confidence            333455555566689999999999999999999999987643221   22 244689999999865 344 999999999


Q ss_pred             cccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhH-------------------
Q psy14015         76 GTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHF-------------------  130 (318)
Q Consensus        76 ~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~i-------------------  130 (318)
                      ..++..-..   .......+|.+..++.+++..+++.|+.+|..++...+.  .. .....                   
T Consensus        82 ~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~  161 (434)
T d1q1sc_          82 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG  161 (434)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred             HHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH
Confidence            998752111   112345788888899999999999999999988753211  10 11112                   


Q ss_pred             ----------------------------HHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHH-----HHHHHHhhcc
Q psy14015        131 ----------------------------VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE-----LRSHFRNLCQ  177 (318)
Q Consensus       131 ----------------------------lp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~-----l~~~~~~l~~  177 (318)
                                                  +|.+..++++++..++..++..+..+..... .....     +...+.++..
T Consensus       162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~Lv~ll~  240 (434)
T d1q1sc_         162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLG  240 (434)
T ss_dssp             HHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhh-hhHHHHhhcccchhcccccc
Confidence                                        3333333333344444444444433322110 00000     0112222333


Q ss_pred             CCCcccccchh----hcCc--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--h-hhHhhHHHHHH
Q psy14015        178 DDTPMQQGHVW----ECGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--D-YLKTDIIPMFV  242 (318)
Q Consensus       178 ~~~~~vR~~v~----~~~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~-~~~~~llp~l~  242 (318)
                      ...+.++..+.    .+..        ......++.+.+++++++.+||..++..++.++..-..  . .....++|.+.
T Consensus       241 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li  320 (434)
T d1q1sc_         241 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  320 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHH
Confidence            33333322110    0110        11223456788899999999999999999999753211  1 12345889999


Q ss_pred             HhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015        243 NLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT  309 (318)
Q Consensus       243 ~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~  309 (318)
                      .++.++++.+|..++.++..++...+.+...    ..+++.|..++++          .+++++..+++..
T Consensus       321 ~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~----------~d~~~~~~~l~~l  381 (434)
T d1q1sc_         321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA----------KDTKIIQVILDAI  381 (434)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTS----------SCHHHHHHHHHHH
T ss_pred             HHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcC----------CCHHHHHHHHHHH
Confidence            9999999999999999999999887665432    3368999999999          7777777766543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.28  E-value=2e-12  Score=96.66  Aligned_cols=108  Identities=14%  Similarity=0.059  Sum_probs=88.0

Q ss_pred             hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHH
Q psy14015        138 ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAA  217 (318)
Q Consensus       138 ~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~a  217 (318)
                      ++|+++.+|..|+..|+.+.                                      ...++.+.++++|+++.||..+
T Consensus         1 L~D~~~~VR~~A~~aL~~~~--------------------------------------~~~~~~L~~~l~d~~~~vR~~a   42 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG--------------------------------------DEAFEPLLESLSNEDWRIRGAA   42 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS--------------------------------------STTHHHHHHGGGCSCHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC--------------------------------------HHHHHHHHHHHcCCCHHHHHHH
Confidence            36788899999988877431                                      1125677889999999999999


Q ss_pred             HHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCC
Q psy14015        218 AGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNE  297 (318)
Q Consensus       218 a~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~  297 (318)
                      +.+||.+..        ...+|.+..+++|+++.||.+++.+|+.+.    .    ....|.+..+++|          +
T Consensus        43 ~~~L~~~~~--------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~----~----~~~~~~L~~ll~d----------~   96 (111)
T d1te4a_          43 AWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----G----ERVRAAMEKLAET----------G   96 (111)
T ss_dssp             HHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----S----HHHHHHHHHHTTS----------C
T ss_pred             HHHHHhcch--------hhhHHHHHhhhccchhHHHHHHHHHHHHhC----c----cchHHHHHHHHcC----------C
Confidence            999987642        357888999999999999999999998874    2    3467889999999          9


Q ss_pred             CCchhhHHhhhh
Q psy14015        298 FHPLELHVISAT  309 (318)
Q Consensus       298 ~~~Vr~~~i~~~  309 (318)
                      +++||..+++..
T Consensus        97 ~~~vr~~A~~aL  108 (111)
T d1te4a_          97 TGFARKVAVNYL  108 (111)
T ss_dssp             CTHHHHHHHHHG
T ss_pred             CHHHHHHHHHHH
Confidence            999999988653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.25  E-value=3.9e-13  Score=100.63  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=86.6

Q ss_pred             ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccC
Q psy14015         99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD  178 (318)
Q Consensus        99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~  178 (318)
                      ++|+++.||..|+.+|..+..    +     .++.+.++++|+++.+|..|+..++.+.                     
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~----~-----~~~~L~~~l~d~~~~vR~~a~~~L~~~~---------------------   50 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD----E-----AFEPLLESLSNEDWRIRGAAAWIIGNFQ---------------------   50 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS----T-----THHHHHHGGGCSCHHHHHHHHHHHGGGC---------------------
T ss_pred             CCCcCHHHHHHHHHHHHHhCH----H-----HHHHHHHHHcCCCHHHHHHHHHHHHhcc---------------------
Confidence            468888999998888765432    1     3345567888999999999988887542                     


Q ss_pred             CCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHH
Q psy14015        179 DTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVE  258 (318)
Q Consensus       179 ~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~  258 (318)
                                      ....+|.+..+++|+++.||..++.+|++++.        ...+|.+..+++|+++.||.+++.
T Consensus        51 ----------------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~  106 (111)
T d1te4a_          51 ----------------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVN  106 (111)
T ss_dssp             ----------------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHH
T ss_pred             ----------------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHH
Confidence                            14467889999999999999999999998742        457888999999999999999988


Q ss_pred             HHH
Q psy14015        259 ACV  261 (318)
Q Consensus       259 ~l~  261 (318)
                      +|.
T Consensus       107 aL~  109 (111)
T d1te4a_         107 YLE  109 (111)
T ss_dssp             HGG
T ss_pred             HHH
Confidence            763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.5e-10  Score=111.07  Aligned_cols=280  Identities=16%  Similarity=0.056  Sum_probs=189.7

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHH-HHHHHHHHHcccccCcCcc---cchhc
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDE-VLLALAEQLGTFTPNVGGP---EYVHC   90 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~-VR~~aa~~L~~l~~~~~~~---~~~~~   90 (318)
                      .++..+.+++ ..|..++..++.++..--|...|++++|.+.+.+.+  ..+ +|.++...|..+++.++..   .....
T Consensus        94 ~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~  172 (876)
T d1qgra_          94 YVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (876)
T ss_dssp             HHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             HHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            4556666665 456678888888877633433578999999887643  335 8989999998887655432   23344


Q ss_pred             cchHHhhhcc--CchhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015         91 LLPPLESLAT--VEETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV  164 (318)
Q Consensus        91 llp~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~  164 (318)
                      +++.+.+.+.  +++..+|..|+.++..........    .....+++.+....+++++.+|..++..+..++....+..
T Consensus       173 il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            6666655553  445789999999999888776542    2334577777888889999999999998887765544332


Q ss_pred             HHH----HHHHHHhhccCCCcccccc---hh--------------------h-----cC----ccchHHHHHHHHHhhc-
Q psy14015        165 KAE----LRSHFRNLCQDDTPMQQGH---VW--------------------E-----CG----SGVKAELRSHFRNLCQ-  207 (318)
Q Consensus       165 ~~~----l~~~~~~l~~~~~~~vR~~---v~--------------------~-----~~----~~~~~~ll~~l~~l~~-  207 (318)
                      ...    +...+.....+..+.++..   .+                    .     ..    ......++|.+..... 
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            221    1111222222222222210   00                    0     00    0123455666665542 


Q ss_pred             ------CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh---hHhhHH
Q psy14015        208 ------DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV---EQLVMP  278 (318)
Q Consensus       208 ------D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p  278 (318)
                            |+.+.+|.++...+..++...+.+ ....++|.+...+.+++|..|.+++..++.+....+.+..   ...++|
T Consensus       333 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~  411 (876)
T d1qgra_         333 QDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP  411 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence                  356789999999999999988765 4578999999999999999999999999888877766543   346889


Q ss_pred             HHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        279 TLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       279 ~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      .+.+.+.|          +.+.||..+...
T Consensus       412 ~l~~~l~d----------~~~~vr~~a~~~  431 (876)
T d1qgra_         412 TLIELMKD----------PSVVVRDTAAWT  431 (876)
T ss_dssp             HHHHHHTC----------SSHHHHHHHHHH
T ss_pred             HHHHhhcC----------CccHHHHHHHHH
Confidence            99999999          788888766543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.5e-09  Score=101.11  Aligned_cols=245  Identities=14%  Similarity=0.068  Sum_probs=179.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---cc
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PE   86 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~   86 (318)
                      ++.+...+++++..++..++..|+.++.. +++    -.....+|.+..++.+.+. +++.++..|..++.....   ..
T Consensus       164 i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~  242 (503)
T d1wa5b_         164 VPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS  242 (503)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred             hHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHH
Confidence            56778889999999999999999998743 222    1233567888888877665 888899999988753322   12


Q ss_pred             chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015         87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ....++|.+..++..+++.++..+..++..++......   .+...++|.+..++.+++..++..++..++.+...-. .
T Consensus       243 ~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~-~  321 (503)
T d1wa5b_         243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-L  321 (503)
T ss_dssp             HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-H
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH-H
Confidence            34568899999999999999999999999998754321   1233478888888888888999998888887653321 1


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc---hhhhHhhHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPM  240 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~---~~~~~~~llp~  240 (318)
                      ....+                         ....+++.+..+++++++.+|+.++.+++.++..-.   .......++|.
T Consensus       322 ~~~~~-------------------------~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~  376 (503)
T d1wa5b_         322 QTQVV-------------------------INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP  376 (503)
T ss_dssp             HHHHH-------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             HHHhh-------------------------hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccch
Confidence            11111                         123468999999999999999999999999874211   11123458899


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhCCh--hh----hhHhhHHHHHHhccc
Q psy14015        241 FVNLAQDEQDSVRLLAVEACVSIASLLSQ--SD----VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~--~~----~~~~l~p~l~~ll~D  286 (318)
                      +..++.+++..||..++.++..++.....  +.    ....+++.+..+|+.
T Consensus       377 li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~  428 (503)
T d1wa5b_         377 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI  428 (503)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred             hHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcC
Confidence            99999999999999999999999875432  21    123478889999987

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.5e-09  Score=104.42  Aligned_cols=283  Identities=14%  Similarity=0.117  Sum_probs=183.9

Q ss_pred             HHHHHhcCccHHHHHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc----ch
Q psy14015         17 VLIDELKNEDVQLRLNSIKKLSTIALALGQER---TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE----YV   88 (318)
Q Consensus        17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~----~~   88 (318)
                      .....+.++++..|..++..++.++...+...   ..+.++|.+.+.+.|+.+ ||.+++..++.+++.++...    ..
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  452 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL  452 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhh
Confidence            34456679999999999999999876555432   345788999899999887 99999999999887655422    22


Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhh---HHHHHHHhhc--CCCchhhhhhhhhhhhhcccc
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAH---FVPLVQRLAS--GDWFTSRTSACGLFSVCYPRV  160 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~---ilp~~~~l~~--d~~~~vR~~a~~~l~~~~~~~  160 (318)
                      ..+++.+.....+ +..++..+..++..+...+.+   ......   +++.+.....  +....+|..+...++.+....
T Consensus       453 ~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~  531 (861)
T d2bpta1         453 PGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            3344444444434 456667777777777665433   122222   3333333332  345678888877777776655


Q ss_pred             CcchHHHHH-------HHHHhhccCCCccc-----------ccchh--------hcCc---cchHHHHHHHHHhhcC-CC
Q psy14015        161 TAGVKAELR-------SHFRNLCQDDTPMQ-----------QGHVW--------ECGS---GVKAELRSHFRNLCQD-DT  210 (318)
Q Consensus       161 ~~~~~~~l~-------~~~~~l~~~~~~~v-----------R~~v~--------~~~~---~~~~~ll~~l~~l~~D-~~  210 (318)
                      ++.......       ..+..........+           +..+.        ..++   .....+++.+.+.+++ ++
T Consensus       532 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  611 (861)
T d2bpta1         532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDS  611 (861)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCc
Confidence            544332221       11222111111110           00000        0111   2345677887777765 45


Q ss_pred             HHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccc
Q psy14015        211 PMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       211 ~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D  286 (318)
                      +.+|..+..+++.++..+|.+.  ....++|.+...++|+++.||..++..++.++..++...  ....+++.+...+.+
T Consensus       612 ~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~  691 (861)
T d2bpta1         612 AFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN  691 (861)
T ss_dssp             GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCC
Confidence            7899999999999999998753  356799999999999999999999999999999887753  345688889999987


Q ss_pred             cccccccCCCCCCchhhHHhhh
Q psy14015        287 IVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       287 ~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                              .+.+++||..++..
T Consensus       692 --------~~~~~~~k~~~~~~  705 (861)
T d2bpta1         692 --------PNARRELKPAVLSV  705 (861)
T ss_dssp             --------TTCCTTHHHHHHHH
T ss_pred             --------CCCCHHHHHHHHHH
Confidence                    22356777666544

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=2.5e-09  Score=99.61  Aligned_cols=247  Identities=15%  Similarity=0.107  Sum_probs=176.8

Q ss_pred             hHHHHHHHhcCccHHHHHHHHHhHHHHHHh--hCh--HhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCc---
Q psy14015         14 PIAVLIDELKNEDVQLRLNSIKKLSTIALA--LGQ--ERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGG---   84 (318)
Q Consensus        14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~--lg~--~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~---   84 (318)
                      .+..++..+++++...+..++..+.++...  -.+  .-....++|.+.++++. .++ ++..++..|..++..-..   
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~  156 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  156 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            478888999999999999999998887532  111  11345688999888864 445 999999999988752111   


Q ss_pred             ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      ......++|.+..++.+++..++..|+.++..++...+.  +. ....+++.+..++++....++..++..+..++....
T Consensus       157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~  236 (503)
T d1wa5b_         157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  236 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence            112244788999999988999999999999999865432  12 233477888888888877777777777765543222


Q ss_pred             cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHH
Q psy14015        162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDII  238 (318)
Q Consensus       162 ~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~ll  238 (318)
                      .....                          .....++|.+..++.+.++.++..++.+++.++..-..   ..+...++
T Consensus       237 ~~~~~--------------------------~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  290 (503)
T d1wa5b_         237 PQPDW--------------------------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP  290 (503)
T ss_dssp             SCCCH--------------------------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred             cchHH--------------------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhh
Confidence            11000                          12245789999999999999999999999998752211   12234578


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhccc
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~D  286 (318)
                      |.+..++.++++.++..++.+++.++..-+...   ....++|.+..++++
T Consensus       291 ~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~  341 (503)
T d1wa5b_         291 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS  341 (503)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             hhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC
Confidence            889999999999999999999999885432211   122478999999998

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2.7e-09  Score=96.73  Aligned_cols=282  Identities=14%  Similarity=0.128  Sum_probs=177.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCCh--H----HHHHHHHHHHccccc---C
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDE--D----EVLLALAEQLGTFTP---N   81 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~--~----~VR~~aa~~L~~l~~---~   81 (318)
                      ++.++..+++++..+|..++..|..++.. +++    -.....++.+..++...  .    .....++..+..++.   .
T Consensus       101 i~~l~~~L~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (434)
T d1q1sc_         101 IPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  179 (434)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTT
T ss_pred             hhhhhhccccCCHHHHHHHHHHHHHHhcc-chHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccc
Confidence            67788899999999999999999888632 111    11234455555544321  1    112233333433322   2


Q ss_pred             cCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         82 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        82 ~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                      .........++|.+..++.++++.++..++.++..++.....  . .....++|.+.++++++++.++..++..++.+..
T Consensus       180 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         180 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHh
Confidence            333334455778888888777788888888888888765432  2 2333477777777777778888877777776654


Q ss_pred             ccCc---c-hHHHHHHHHHhhccCCCcccccc-hhh---cC---c-----cchHHHHHHHHHhhcCCCHHHHHHHHHhhH
Q psy14015        159 RVTA---G-VKAELRSHFRNLCQDDTPMQQGH-VWE---CG---S-----GVKAELRSHFRNLCQDDTPMVRRAAAGKLG  222 (318)
Q Consensus       159 ~~~~---~-~~~~l~~~~~~l~~~~~~~vR~~-v~~---~~---~-----~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~  222 (318)
                      .-..   . ......+.+..+.+...+.+|.. ++.   +.   +     .....++|.+.+++.++++.+|..++.+++
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~  339 (434)
T d1q1sc_         260 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT  339 (434)
T ss_dssp             SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHH
Confidence            2211   1 11122233344444555555442 110   11   0     122347899999999999999999999999


Q ss_pred             HHHHHhchhhh----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC---hh-hhh----H-hhHHHHHHhcccccc
Q psy14015        223 ELAKVVEVDYL----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS---QS-DVE----Q-LVMPTLRQCSVQIVD  289 (318)
Q Consensus       223 ~l~~~~~~~~~----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~---~~-~~~----~-~l~p~l~~ll~D~~~  289 (318)
                      .++...+.+..    ...+++.+..+++++++.++..++.++..+.+...   .. ...    + ..++.+..+..+   
T Consensus       340 nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~---  416 (434)
T d1q1sc_         340 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH---  416 (434)
T ss_dssp             HHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTC---
T ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcC---
Confidence            99887554432    23468999999999999999999999988876432   21 111    1 256677778777   


Q ss_pred             ccccCCCCCCchhhHHhh
Q psy14015        290 HKFCPNNEFHPLELHVIS  307 (318)
Q Consensus       290 ~~~~~~~~~~~Vr~~~i~  307 (318)
                             ++++|+....+
T Consensus       417 -------~n~~i~~~a~~  427 (434)
T d1q1sc_         417 -------ENESVYKASLN  427 (434)
T ss_dssp             -------SSHHHHHHHHH
T ss_pred             -------CCHHHHHHHHH
Confidence                   88888876553

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-09  Score=101.08  Aligned_cols=259  Identities=10%  Similarity=-0.003  Sum_probs=178.4

Q ss_pred             CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh-H--hhchhhhhhhhcCC-h-HHHHHHHHHHHcccccCcCc--
Q psy14015         12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-T--RGELIPFLTETIYD-E-DEVLLALAEQLGTFTPNVGG--   84 (318)
Q Consensus        12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~-~--~~~llp~l~~l~~D-~-~~VR~~aa~~L~~l~~~~~~--   84 (318)
                      ...|+.+.+.|++++..+|..++..+..++..-.... .  ...++|.+..++.+ + .+++..++..|..++..-..  
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            3458899999999999999999999999974311111 1  13468888877753 3 34999999999988642110  


Q ss_pred             ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015         85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT  161 (318)
Q Consensus        85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~  161 (318)
                      .......+|.+..++.++++.++..|+.+|..++...+..  . ...-.+|.+..++++++..++..++..++.+... .
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~  174 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-N  174 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh-h
Confidence            1122335788888999999999999999999998765432  2 2334788889999999899999998888766432 1


Q ss_pred             cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhch--hhhHhhHH
Q psy14015        162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDII  238 (318)
Q Consensus       162 ~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~ll  238 (318)
                      ...+..+                         .....++.+..++. .+...++..++..+..++..-+.  .......+
T Consensus       175 ~~~~~~~-------------------------~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~  229 (529)
T d1jdha_         175 QESKLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM  229 (529)
T ss_dssp             HHHHHHH-------------------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHH
T ss_pred             hHHHHHH-------------------------HhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhh
Confidence            1111111                         11234566666654 45578888888888877642211  12233577


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015        239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI  306 (318)
Q Consensus       239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i  306 (318)
                      +.+..++++++..++..++.++..++............+|.+.+++++          ++++|+..+.
T Consensus       230 ~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~----------~~~~~~~~a~  287 (529)
T d1jdha_         230 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----------DDINVVTCAA  287 (529)
T ss_dssp             HHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred             hhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhccc----------ccHHHHHHHH
Confidence            888888899999999988888888886655544455678888888887          5666665443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=8.7e-09  Score=100.89  Aligned_cols=273  Identities=14%  Similarity=0.100  Sum_probs=178.2

Q ss_pred             hHHHHHHHhcCcc--HHHHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhcCC--hHH-HHHHHHHHHcccccCcCc-
Q psy14015         14 PIAVLIDELKNED--VQLRLNSIKKLSTIALALGQERT---RGELIPFLTETIYD--EDE-VLLALAEQLGTFTPNVGG-   84 (318)
Q Consensus        14 ~i~~l~~~l~~~~--~~~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~~D--~~~-VR~~aa~~L~~l~~~~~~-   84 (318)
                      -++.++..+.+++  ...|..++..|..++..++++..   .+.++|.+.+.+.+  .+. +|..+...+..+...... 
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            3667777776544  67888999999999877776532   34567777665543  334 999999988877654432 


Q ss_pred             ---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         85 ---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        85 ---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                         ......++..+...+.++++.+|..+.+++..+.+.....   .....+.+.+.....+....++..+...+..++.
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence               2233457777888888999999999999999999877542   2223455566666666666777766655443322


Q ss_pred             cc--------------------CcchHH----HHHHHHHhhccCC-------Ccccccc---h-----hhcCccchHHHH
Q psy14015        159 RV--------------------TAGVKA----ELRSHFRNLCQDD-------TPMQQGH---V-----WECGSGVKAELR  199 (318)
Q Consensus       159 ~~--------------------~~~~~~----~l~~~~~~l~~~~-------~~~vR~~---v-----~~~~~~~~~~ll  199 (318)
                      ..                    ......    .+...+.......       ...+|..   +     ...++.....++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  368 (876)
T d1qgra_         289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            10                    000111    1111111111111       0112210   0     011223345677


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----h
Q psy14015        200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----V  272 (318)
Q Consensus       200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~  272 (318)
                      +.+.+.+++++|..|.+++..++.+....+.+   .....++|.+...++|+++.||.+++.+++.+++.+++..    .
T Consensus       369 ~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T d1qgra_         369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHH
Confidence            88888899999999999999999887655433   2345788999999999999999999999999998876532    3


Q ss_pred             hHhhHHHHHHhccc
Q psy14015        273 EQLVMPTLRQCSVQ  286 (318)
Q Consensus       273 ~~~l~p~l~~ll~D  286 (318)
                      ...+++.+...+.|
T Consensus       449 ~~~~~~~l~~~l~~  462 (876)
T d1qgra_         449 LAPLLQCLIEGLSA  462 (876)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             hhhHHHHHHHHhcC
Confidence            45577777777776

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.8e-08  Score=83.33  Aligned_cols=175  Identities=14%  Similarity=0.047  Sum_probs=122.8

Q ss_pred             HHHHHHHHHcccccCcCccc-c--hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhc-
Q psy14015         67 VLLALAEQLGTFTPNVGGPE-Y--VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLAS-  139 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~~~~~-~--~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~-  139 (318)
                      +|..+...|..+++...... +  ...+.+++..++.++++.||..|+.++..++..-+.   .......+|.+.+++. 
T Consensus        33 ~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~  112 (264)
T d1xqra1          33 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  112 (264)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhc
Confidence            66666666666654211000 0  011445566788889999999999999999976433   1233457888888774 


Q ss_pred             CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015        140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG  219 (318)
Q Consensus       140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~  219 (318)
                      +....+|..++..+..++..... .+..+                         .....++.+.+++++++..++..++.
T Consensus       113 ~~~~~v~~~a~~aL~~l~~~~~~-~~~~~-------------------------~~~~gi~~L~~lL~~~~~~~~~~a~~  166 (264)
T d1xqra1         113 DACDTVRVKALFAISCLVREQEA-GLLQF-------------------------LRLDGFSVLMRAMQQQVQKLKVKSAF  166 (264)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHH-HHHHH-------------------------HHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccchh-hHHHH-------------------------HHhhhhhHHHHHHhcCchHHHHHHHH
Confidence            56788999998888876543221 11111                         22345789999999999999999999


Q ss_pred             hhHHHHHHhch--h-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        220 KLGELAKVVEV--D-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       220 ~L~~l~~~~~~--~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      .++.++..-+.  . ......+|.+..++++++..+|..++.++..++...
T Consensus       167 ~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         167 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            99999865322  1 123357999999999999999999999999998544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.7e-07  Score=85.91  Aligned_cols=244  Identities=11%  Similarity=0.061  Sum_probs=164.2

Q ss_pred             HHHHHHHhcC-ccHHHHHHHHHhHHHHHHhh-ChH-hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccc
Q psy14015         15 IAVLIDELKN-EDVQLRLNSIKKLSTIALAL-GQE-RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEY   87 (318)
Q Consensus        15 i~~l~~~l~~-~~~~~R~~~~~~L~~ia~~l-g~~-~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~   87 (318)
                      ++.+.+.|++ +++..|..++..|..++..- +.. -.....+|.+..++.++++ ++..++..|..++..-..   ...
T Consensus        61 v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  140 (529)
T d1jdha_          61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR  140 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHH
Confidence            6677788864 56888999999998886321 111 1234568899998888766 999999999988752221   111


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhccccCcc
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAG  163 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~  163 (318)
                      ....+|.+..++++++..++..+..++..++..-...   ......++.+.+++ +.+...++..++..+..+..  ...
T Consensus       141 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~--~~~  218 (529)
T d1jdha_         141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSS  218 (529)
T ss_dssp             HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--STT
T ss_pred             hcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc--ccc
Confidence            2346788888999999999999999999997543221   12222455555555 44456677777777665432  122


Q ss_pred             hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015        164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN  243 (318)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~  243 (318)
                      .+..+                         .....++.+..++++++..++..++.++..+.............+|.+.+
T Consensus       219 ~~~~~-------------------------~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~  273 (529)
T d1jdha_         219 NKPAI-------------------------VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ  273 (529)
T ss_dssp             HHHHH-------------------------HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH
T ss_pred             ccchh-------------------------hhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhh
Confidence            22221                         22346788999999999999999999999887543333333568999999


Q ss_pred             hhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhcc
Q psy14015        244 LAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSV  285 (318)
Q Consensus       244 ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~  285 (318)
                      ++++++..+|..++.++..++..-.+.   ......++.+..++.
T Consensus       274 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~  318 (529)
T d1jdha_         274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL  318 (529)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999998887321111   112345666666653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.6e-07  Score=77.74  Aligned_cols=174  Identities=17%  Similarity=0.173  Sum_probs=123.9

Q ss_pred             ccCchhHHHHHHHHHHHHHHhhCCh-hHHhh--hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015         99 ATVEETVVRDKAVESLRLISAQHSP-HDLEA--HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL  175 (318)
Q Consensus        99 ~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~--~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l  175 (318)
                      ....+...|..|++.|..+++.... ..+..  -+.+++..++++++..+|..|+..++.+...-. ..+..+       
T Consensus        26 ~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~-~~~~~~-------   97 (264)
T d1xqra1          26 EQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQV-------   97 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHH-------
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH-------
Confidence            3445678899999999999865322 11111  244555667888889999999999987764322 122221       


Q ss_pred             ccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHH
Q psy14015        176 CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDS  251 (318)
Q Consensus       176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~  251 (318)
                                        .....+|.+.++++ +.++.+|..++.+++.++......   ......++.+.+++++++..
T Consensus        98 ------------------~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~  159 (264)
T d1xqra1          98 ------------------LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK  159 (264)
T ss_dssp             ------------------HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred             ------------------HHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchH
Confidence                              22456888888885 778999999999999998643321   12345789999999999999


Q ss_pred             HHHHHHHHHHHHHhhCChh--h-hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015        252 VRLLAVEACVSIASLLSQS--D-VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA  308 (318)
Q Consensus       252 VR~aa~~~l~~l~~~l~~~--~-~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~  308 (318)
                      ++..++.++..++..-+..  . .....+|.+..++++          ++++||..+...
T Consensus       160 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~----------~~~~~~~~a~~a  209 (264)
T d1xqra1         160 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT----------EHSPFHEHVLGA  209 (264)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS----------CCSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcC----------CCHHHHHHHHHH
Confidence            9999999999988653221  1 223479999999999          888888877643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.9e-05  Score=67.64  Aligned_cols=269  Identities=13%  Similarity=0.044  Sum_probs=158.4

Q ss_pred             HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh-----HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-
Q psy14015         15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-----TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-   87 (318)
Q Consensus        15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~-----~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-   87 (318)
                      |+.+++.|+++++.++..++..|..++.  +.+.     ...-.+|.|.++++++++ +|..++..|..++..  .+.. 
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~   79 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNK   79 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHH
Confidence            7899999999999999999999999973  2221     233457889999988776 999999999999741  1111 


Q ss_pred             ----hhccchHHhhh-ccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhh---------------cCCCchh
Q psy14015         88 ----VHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLA---------------SGDWFTS  145 (318)
Q Consensus        88 ----~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~---------------~d~~~~v  145 (318)
                          ....++.+..+ ..+.++.+|..|..++..++......  .....+.+.+..+.               ...+..+
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence                12235555554 45667889999999999998764331  12222333333221               2223455


Q ss_pred             hhhhhhhhhhhccccC--------cchHHHHHHHHHhh-cc-CCCc---------------cccc---------------
Q psy14015        146 RTSACGLFSVCYPRVT--------AGVKAELRSHFRNL-CQ-DDTP---------------MQQG---------------  185 (318)
Q Consensus       146 R~~a~~~l~~~~~~~~--------~~~~~~l~~~~~~l-~~-~~~~---------------~vR~---------------  185 (318)
                      +..++..+..+...-.        ......+...+..- .. ....               .++.               
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            6656555543321100        00000111111000 00 0000               0000               


Q ss_pred             -----chh-----------------hc---C-------ccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhch--
Q psy14015        186 -----HVW-----------------EC---G-------SGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--  230 (318)
Q Consensus       186 -----~v~-----------------~~---~-------~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~--  230 (318)
                           ...                 .+   .       .......++.+..++. ..++.++..+...+..++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                 000                 00   0       0123456777766654 46688888888888887643211  


Q ss_pred             -----h-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC-hhhhhHhhHHHHHHhcccc
Q psy14015        231 -----D-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS-QSDVEQLVMPTLRQCSVQI  287 (318)
Q Consensus       231 -----~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~-~~~~~~~l~p~l~~ll~D~  287 (318)
                           . ......+|.+..+++++++.||..++.++..++..-. .+...+..+|.+..++.+.
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~  383 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSH  383 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSC
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhcc
Confidence                 1 1123478999999999999999999999999985432 2223456788888888763

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00025  Score=62.18  Aligned_cols=170  Identities=10%  Similarity=0.024  Sum_probs=106.3

Q ss_pred             cchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015         91 LLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE  167 (318)
Q Consensus        91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~  167 (318)
                      .+|.+.+++.+.++.|+..|+.+|..++..-++  +. ...-.+|.+.+++++++..+|..|+..|+.+...- +..+..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence            468888888888999999999999998843222  22 22346888889999888999999988888764321 112222


Q ss_pred             HHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHh
Q psy14015        168 LRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNL  244 (318)
Q Consensus       168 l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~l  244 (318)
                      +                         .....++.+.+++ ++.++.+|..++..+..++......  .....+.+.+..+
T Consensus        82 i-------------------------~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~  136 (457)
T d1xm9a1          82 T-------------------------RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV  136 (457)
T ss_dssp             H-------------------------HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred             H-------------------------HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHH
Confidence            2                         1122356777665 4677899999999999998643221  1112233333332


Q ss_pred             ---------------hcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhccc
Q psy14015        245 ---------------AQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSVQ  286 (318)
Q Consensus       245 ---------------l~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~D  286 (318)
                                     ....+..++..++.++..++..-....   ...-++|.+..+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             THHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence                           244567888888888777663321111   112367777777765

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.012  Score=57.16  Aligned_cols=255  Identities=11%  Similarity=0.066  Sum_probs=144.0

Q ss_pred             hHHHHHHHhcCcc-HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc----C--ChHH-HHHHHHHHHcccccCcCc-
Q psy14015         14 PIAVLIDELKNED-VQLRLNSIKKLSTIALALGQERTRGELIPFLTETI----Y--DEDE-VLLALAEQLGTFTPNVGG-   84 (318)
Q Consensus        14 ~i~~l~~~l~~~~-~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~----~--D~~~-VR~~aa~~L~~l~~~~~~-   84 (318)
                      |-....+....++ ...|..+...+..++...+.. ....+++++.+.+    .  +.++ .|.++...++.+....+. 
T Consensus       361 p~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~  439 (959)
T d1wa5c_         361 PIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNIT  439 (959)
T ss_dssp             HHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCB
T ss_pred             hHHHHHHHhhhcccccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhh
Confidence            3333344444333 345667777777777655433 4455555555443    2  2345 677777777665432110 


Q ss_pred             ----------ccchhccchHHhhhc---cCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhh
Q psy14015         85 ----------PEYVHCLLPPLESLA---TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG  151 (318)
Q Consensus        85 ----------~~~~~~llp~l~~l~---~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~  151 (318)
                                ....+.+.+.+...+   .++...+|..+...+..+.+...++... .+++.+.+.++|++..+|..|+.
T Consensus       440 ~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~V~~~a~~  518 (959)
T d1wa5c_         440 NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-ELMPILATFLQTDEYVVYTYAAI  518 (959)
T ss_dssp             TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHhCCCchhHHHHHHH
Confidence                      011222222222222   3445789999999999999888766544 48888888999999999999998


Q ss_pred             hhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH-----HHHHHHHhhHHHHH
Q psy14015        152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM-----VRRAAAGKLGELAK  226 (318)
Q Consensus       152 ~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~-----VR~~aa~~L~~l~~  226 (318)
                      .+..++...........         ....+      .+. ..-..++..+...+.+....     ++..+..+++.+..
T Consensus       519 al~~~~~~~~~~~~~~~---------~~~~~------~l~-p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~  582 (959)
T d1wa5c_         519 TIEKILTIRESNTSPAF---------IFHKE------DIS-NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQ  582 (959)
T ss_dssp             HHHHHTTCBSCSSSCCB---------SSCGG------GTT-TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccchh---------hccHH------HHH-hhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHH
Confidence            88766543322100000         00000      000 12234455555554433221     23457788888887


Q ss_pred             Hhchh------hhHhhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHhhCChhhh---hHhhHHHHHHhccc
Q psy14015        227 VVEVD------YLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLSQSDV---EQLVMPTLRQCSVQ  286 (318)
Q Consensus       227 ~~~~~------~~~~~llp~l~~ll~D~~-~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l~~ll~D  286 (318)
                      .++..      .+.+.+.+.+....+++. ...+..+.++++.+....+++..   .+.++|.+...+..
T Consensus       583 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~  652 (959)
T d1wa5c_         583 TSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE  652 (959)
T ss_dssp             HHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhc
Confidence            77643      223445555556666654 46677778889998888877643   34578888877765

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.57  E-value=0.14  Score=43.84  Aligned_cols=50  Identities=18%  Similarity=0.241  Sum_probs=27.3

Q ss_pred             CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14015        210 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS  262 (318)
Q Consensus       210 ~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~  262 (318)
                      ...+|.+|+++|..++... +..+.+.++|+|.+  .+.+.+||.+|...+..
T Consensus       223 ~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         223 STRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             CHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence            4567777777777665432 22333445555554  23334577776665544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.56  E-value=0.029  Score=48.29  Aligned_cols=158  Identities=13%  Similarity=0.024  Sum_probs=89.5

Q ss_pred             HHHHHHHHHcccccCc--Cc----ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC
Q psy14015         67 VLLALAEQLGTFTPNV--GG----PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG  140 (318)
Q Consensus        67 VR~~aa~~L~~l~~~~--~~----~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d  140 (318)
                      +|..+.-.++.++...  ..    +...+.+...+.+.....+..-+..++.+|+.++.   +     ..++.+..++.+
T Consensus       143 l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p-----~~i~~l~~~l~~  214 (336)
T d1lsha1         143 LRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---P-----NSIKKIQRFLPG  214 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---G-----GGHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC---H-----hHHHHHHHHhcc
Confidence            7777777777665421  11    12223333334333444445555666777776652   1     144445544433


Q ss_pred             C-------CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHH
Q psy14015        141 D-------WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMV  213 (318)
Q Consensus       141 ~-------~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~V  213 (318)
                      .       ...+|..|+..|..+....+.                              ...+.++++|.+  .+++.+|
T Consensus       215 ~~~~~~~~~~~vR~aAi~Alr~~~~~~p~------------------------------~v~~~l~~i~~n--~~e~~Ev  262 (336)
T d1lsha1         215 QGKSLDEYSTRVQAEAIMALRNIAKRDPR------------------------------KVQEIVLPIFLN--VAIKSEL  262 (336)
T ss_dssp             SSSCCCCSCHHHHHHHHHTTTTGGGTCHH------------------------------HHHHHHHHHHHC--TTSCHHH
T ss_pred             cccccccccHHHHHHHHHHHHHhhhcCcH------------------------------HHHHHHHHHHcC--CCCChHH
Confidence            2       346777777776644221111                              122334455544  3567999


Q ss_pred             HHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        214 RRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       214 R~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      |-+|...|.+..    +.  ...+--+...+-.|++..|+..+...|..+++.-.+.
T Consensus       263 RiaA~~~lm~t~----P~--~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         263 RIRSCIVFFESK----PS--VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             HHHHHHHHHHTC----CC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHhcC----CC--HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            999988886541    11  1223344555668999999999999998888765554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.095  Score=50.43  Aligned_cols=219  Identities=12%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             CccHHHHHHHHHhHHHHHHhhCh---------------HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc
Q psy14015         24 NEDVQLRLNSIKKLSTIALALGQ---------------ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY   87 (318)
Q Consensus        24 ~~~~~~R~~~~~~L~~ia~~lg~---------------~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~   87 (318)
                      +.+|..|-.++..++.++...+.               +.....+.|.+. ...+... +|..++..++.+++....+ .
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~-~~~~~~~~lr~~~~~~i~~~~~~~~~~-~  493 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-SNNIPHIILRVDAIKYIYTFRNQLTKA-Q  493 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-CSSCSCHHHHHHHHHHHHHTGGGSCHH-H
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHc-cCCCchHHHHHHHHHHHHHHHhhccHH-H
Confidence            46777888888877777532110               001122223222 2234445 9999999999998765543 4


Q ss_pred             hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh----------hHHhhhHHHH---HHHhhcCCC--chh---hhhh
Q psy14015         88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP----------HDLEAHFVPL---VQRLASGDW--FTS---RTSA  149 (318)
Q Consensus        88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----------~~~~~~ilp~---~~~l~~d~~--~~v---R~~a  149 (318)
                      ...+++.+..++.|++..||..|..++..+......          +....++-+.   +.....+..  ...   ...+
T Consensus       494 ~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~l  573 (959)
T d1wa5c_         494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL  573 (959)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence            466888888899999999999999999999875432          2222222222   222222221  111   1112


Q ss_pred             hhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHh
Q psy14015        150 CGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVV  228 (318)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~  228 (318)
                      ...+..++...++.               ..|.        .+.....+.+.+....+++ ++..+..+..+++.+....
T Consensus       574 l~~l~~ii~~~~~~---------------~~~~--------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~  630 (959)
T d1wa5c_         574 MRSIFRVLQTSEDS---------------IQPL--------FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT  630 (959)
T ss_dssp             HHHHHHHHHHHTTT---------------TGGG--------HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHH---------------HHHH--------HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhc
Confidence            22222222111111               1110        0011233444444555554 4778888889999988877


Q ss_pred             chhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015        229 EVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL  267 (318)
Q Consensus       229 ~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l  267 (318)
                      |++.   ..+.++|.+...++.........+..-+..+....
T Consensus       631 ~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         631 QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            6543   44668999988887666666666666666555544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.65  E-value=0.25  Score=36.61  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015        196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQS  270 (318)
Q Consensus       196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll-~D~~~~VR~aa~~~l~~l~~~l~~~  270 (318)
                      ++.+..+.+.+++++++|...|..-|-.+..++|...    ...+++..+.+++ +.+...||..+...+...+..|+.+
T Consensus        41 k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            5678888888999999999999999999999887642    1234555555555 4457789999999999999988765


Q ss_pred             hhhHhhHHHHHHhccccccccccCCCCCCchh
Q psy14015        271 DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLE  302 (318)
Q Consensus       271 ~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr  302 (318)
                      .....+......+-+.        +.+||+++
T Consensus       121 ~~~~~i~~~y~~Lk~~--------G~~FP~l~  144 (145)
T d1dvpa1         121 DKYQAIKDTMTILKAK--------GHTFPELR  144 (145)
T ss_dssp             SSCCHHHHHHHHHHHT--------TCCCCCCC
T ss_pred             ccchHHHHHHHHHHHC--------CCCCcCCC
Confidence            4444444444444444        55677765

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.14  E-value=0.43  Score=37.70  Aligned_cols=134  Identities=12%  Similarity=0.015  Sum_probs=78.4

Q ss_pred             hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchHHH
Q psy14015         89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVKAE  167 (318)
Q Consensus        89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~  167 (318)
                      ..+..++..+...+..+.|..|+..+.......+.+     .++.+..+.... +|.    .|..++             
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~-----~l~~~~~~~~~~~~Wd----~vD~~~-------------  106 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLE-----EVVAFKAYVPQKAWWD----SVDAWR-------------  106 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH-----HHHHGGGGTTTTCSHH----HHHHHH-------------
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHccCccHH----HHHHHH-------------
Confidence            345556667777777788888887776666555443     234444444442 342    222221             


Q ss_pred             HHHHH-HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015        168 LRSHF-RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ  246 (318)
Q Consensus       168 l~~~~-~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~  246 (318)
                        ..+ +.+..                ...++.+.+.....|++.-+|++++-.+-...    .+...+.+++....++.
T Consensus       107 --~~i~~~~~~----------------~~~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~----~~~~~~~~~~~~~~~~~  164 (213)
T d2b6ca1         107 --KFFGSWVAL----------------HLTELPTIFALFYGAENFWNRRVALNLQLMLK----EKTNQDLLKKAIIYDRT  164 (213)
T ss_dssp             --HHHHHHHHH----------------SGGGHHHHHHHHTTCSSHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHTTT
T ss_pred             --HHHHHHHHH----------------hhhhHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HcccHHHHHHHHHHhCC
Confidence              111 11111                11345677888888888544444433332121    12223567888889999


Q ss_pred             CCcHHHHHHHHHHHHHHHhh
Q psy14015        247 DEQDSVRLLAVEACVSIASL  266 (318)
Q Consensus       247 D~~~~VR~aa~~~l~~l~~~  266 (318)
                      |++..||++...+|..+++.
T Consensus       165 d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         165 TEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888754

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.30  E-value=0.39  Score=37.97  Aligned_cols=127  Identities=8%  Similarity=-0.042  Sum_probs=79.4

Q ss_pred             HHHHHh-cCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcc-cccCcCcccchhccc
Q psy14015         17 VLIDEL-KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGT-FTPNVGGPEYVHCLL   92 (318)
Q Consensus        17 ~l~~~l-~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~-l~~~~~~~~~~~~ll   92 (318)
                      .+++.| +++..+.|..++.-+........     ++.++++..++.+ +.| +=...+..++. +..      ..+...
T Consensus        53 ~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~-----~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~------~~~~~~  121 (213)
T d2b6ca1          53 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL------HLTELP  121 (213)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH------SGGGHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH------hhhhHH
Confidence            344333 55566777777776655433322     3346777777765 456 54566655433 321      123356


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015         93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP  158 (318)
Q Consensus        93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~  158 (318)
                      +.+..+..|++.-+|.+|+-+.......-.    .+.++.++..+.+|+.+.||++....|..+..
T Consensus       122 ~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~----~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k  183 (213)
T d2b6ca1         122 TIFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  183 (213)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHccc----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            788889999998888887655433322222    23467778888999999999999888776543