Psyllid ID: psy14016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
msdvqwpwqynfppfftlqpneETRKKQLEAWRDLVLEYHKKTKTCIIDIQeadntalffnpaissilyah
Flexible Loop (DISEMBL)
msdvqwpwqynfppfftlqpnEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH
Low Complexity Region (SEG)
MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH
Disordered region (IsUnstruct)
***VQWPWQYNFPPFFTLQPNE*TRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILY**
Disordered Region (DISOPRED)
*SDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSI****
Disordered Region (DISEMBL)
MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH
Disordered Region (DISPRO)
**DVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILY**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q6AX45	174	Vacuolar protein-sorting-	N/A	N/A	0.901	0.367	0.531	1e-13
Q6NWF4	174	Vacuolar protein-sorting-	yes	N/A	0.901	0.367	0.546	1e-13
Q7JXV9	174	Vacuolar protein-sorting-	yes	N/A	0.943	0.385	0.5	3e-13
P0C0A1	176	Vacuolar protein-sorting-	yes	N/A	0.901	0.363	0.5	1e-11
Q9CQ80	176	Vacuolar protein-sorting-	yes	N/A	0.901	0.363	0.5	1e-11
Q9BRG1	176	Vacuolar protein-sorting-	yes	N/A	0.901	0.363	0.5	1e-11
Q5E9A6	176	Vacuolar protein-sorting-	yes	N/A	0.901	0.363	0.5	2e-11
Q8VZC9	179	Vacuolar protein sorting-	yes	N/A	0.929	0.368	0.411	4e-09
Q55GD9	194	Vacuolar protein-sorting-	yes	N/A	0.901	0.329	0.439	1e-06
P47142	202	Vacuolar protein-sorting-	yes	N/A	0.492	0.173	0.457	0.0008

>sp|Q6AX45|VPS25_XENLA Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis GN=vps25 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQYNFPPFFTLQPN +TR+KQL AW  LVL Y ++ K   +++ E   + LF N  I
Sbjct: 4  EWPWQYNFPPFFTLQPNVDTRQKQLSAWSSLVLSYCRQNKLYTMNLMEIQESPLFNNKKI 63

Query: 65 SSIL 68
             L
Sbjct: 64 QRKL 67

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.
Xenopus laevis (taxid: 8355)

>sp|Q6NWF4|VPS25_DANRE Vacuolar protein-sorting-associated protein 25 OS=Danio rerio GN=vps25 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 43/64 (67%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQYNFPPFFTLQPN +TR+KQL AW  LVL Y +  K   +D+ EA  + +F N  I
Sbjct: 4  EWPWQYNFPPFFTLQPNVDTRQKQLAAWCSLVLSYCRHRKLYTLDVLEAQESPVFNNKKI 63

Query: 65 SSIL 68
             L
Sbjct: 64 ERKL 67

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.

Danio rerio (taxid: 7955)

>sp|Q7JXV9|VPS25_DROME Vacuolar protein-sorting-associated protein 25 OS=Drosophila melanogaster GN=Vps25 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++ QWPW+Y FPPFFTLQP+EETR++QL+ W DL L+Y + T    + I +  N+ LF 
Sbjct: 1  MAEFQWPWEYTFPPFFTLQPHEETRQQQLKVWTDLFLKYLRHTNRFTLSIGD-QNSPLFH 59

Query: 61 NPAISSIL 68
          N A+   L
Sbjct: 60 NEALKRRL 67

Component of the ESCRT-II complex (ensodomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex (By similarity). Seems to function as a tumor suppressor by regulating Notch trafficking, hence preventing non-autonomous overproliferation. May be involved in the regulation of autophagy. ESCRT-II interacts with bicoid mRNA, which is required for the anterior localization of bicoid mRNA in the developing egg.

Drosophila melanogaster (taxid: 7227)

>sp|P0C0A1|VPS25_RAT Vacuolar protein-sorting-associated protein 25 OS=Rattus norvegicus GN=Vps25 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N  +
Sbjct: 6  EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65

Query: 65 SSIL 68
             L
Sbjct: 66 QRKL 69

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex (By similarity). The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQ80|VPS25_MOUSE Vacuolar protein-sorting-associated protein 25 OS=Mus musculus GN=Vps25 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N  +
Sbjct: 6  EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65

Query: 65 SSIL 68
             L
Sbjct: 66 QRKL 69

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL.

Mus musculus (taxid: 10090)

>sp|Q9BRG1|VPS25_HUMAN Vacuolar protein-sorting-associated protein 25 OS=Homo sapiens GN=VPS25 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N  +
Sbjct: 6  EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65

Query: 65 SSIL 68
             L
Sbjct: 66 QRKL 69

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL. The ESCRT-II complex may be involved in facilitating the budding of certain RNA viruses.

Homo sapiens (taxid: 9606)

>sp|Q5E9A6|VPS25_BOVIN Vacuolar protein-sorting-associated protein 25 OS=Bos taurus GN=VPS25 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N  +
Sbjct: 6  EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLTFCRLHKQSSMTVMEAQESPLFNNVKL 65

Query: 65 SSIL 68
             L
Sbjct: 66 QRKL 69

Component of the ESCRT-II complex (ensodomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL.

Bos taurus (taxid: 9913)

>sp|Q8VZC9|VPS25_ARATH Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          ++D + P  +N+PP+FTLQP  +TR+KQ++ W++L+L+Y K  K  +I ++E  +  LF 
Sbjct: 4  LADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEE--DFPLFS 61

Query: 61 NPAISSIL 68
          N AI   L
Sbjct: 62 NSAIDRSL 69

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55GD9|VPS25_DICDI Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum GN=vps25 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEA--DNTALFFNP 62
          Q+P  Y+  PFFT+QP   TRKKQ + W+DL+L+Y +  K   +DI E+   N+ LF N 
Sbjct: 7  QFPPYYHKEPFFTIQPILNTRKKQFQMWQDLILQYCRYYKIYELDINESIKSNSVLFNNE 66

Query: 63 AISSIL 68
           I+  L
Sbjct: 67 KINRKL 72

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation.

Dictyostelium discoideum (taxid: 44689)

>sp|P47142|VPS25_YEAST Vacuolar protein-sorting-associated protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS25 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 10 YNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTK 44
          Y+FPP +T QPN  TR++Q+  W D++ +Y K  K
Sbjct: 8  YSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKK 42

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
193613258	172	PREDICTED: vacuolar protein-sorting-asso	0.957	0.395	0.588	3e-17
443690101	175	hypothetical protein CAPTEDRAFT_161891 [	0.957	0.388	0.588	3e-17
357606526	175	putative vacuolar protein sorting 25 [Da	0.957	0.388	0.588	9e-17
307192572	175	Vacuolar protein-sorting-associated prot	0.957	0.388	0.558	1e-16
340713990	175	PREDICTED: vacuolar protein-sorting-asso	0.957	0.388	0.573	1e-16
350418878	175	PREDICTED: vacuolar protein-sorting-asso	0.957	0.388	0.573	1e-16
332375118	177	unknown [Dendroctonus ponderosae]	0.943	0.378	0.582	2e-16
48104740	175	PREDICTED: vacuolar protein-sorting-asso	0.957	0.388	0.558	3e-16
383849443	175	PREDICTED: vacuolar protein-sorting-asso	0.957	0.388	0.573	4e-16
380025024	175	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.957	0.388	0.544	4e-16

>gi|193613258|ref|XP_001952043.1| PREDICTED: vacuolar protein-sorting-associated protein 25-like [Acyrthosiphon pisum]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 51/68 (75%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M DVQWPWQY+FPPFFT+QPN ETR+KQL+AWR L+L+Y +  K  +ID++E D   +F 
Sbjct: 1  MGDVQWPWQYSFPPFFTIQPNAETRQKQLDAWRTLLLDYCRTQKVSVIDVREGDLLPVFN 60

Query: 61 NPAISSIL 68
          N  IS  L
Sbjct: 61 NTTISRKL 68

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443690101|gb|ELT92317.1| hypothetical protein CAPTEDRAFT_161891 [Capitella teleta]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M + ++PWQYNFPPFFTLQPN +TR+KQL+AWR LVL+YH+  K   +DI EA ++ LFF
Sbjct: 1  MGNFEFPWQYNFPPFFTLQPNADTRRKQLDAWRSLVLDYHRHNKQYTLDIAEAQSSDLFF 60

Query: 61 NPAISSIL 68
          N +I+  L
Sbjct: 61 NKSINRKL 68

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|357606526|gb|EHJ65103.1| putative vacuolar protein sorting 25 [Danaus plexippus]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++V WPWQYNFPPFFT+QP+ ETR KQL+AW++L+ EY K TK   ID++E+ N+ LF 
Sbjct: 1  MAEVSWPWQYNFPPFFTIQPHSETRSKQLQAWQELISEYLKVTKQSTIDVRESQNSPLFN 60

Query: 61 NPAISSIL 68
          N AI+  L
Sbjct: 61 NTAINRKL 68

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192572|gb|EFN75760.1| Vacuolar protein-sorting-associated protein 25 [Harpegnathos saltator]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 52/68 (76%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M+++ WPWQY+FPPFFTLQP+ +TR KQ+ AWR LVLEY++ TK  +ID++E D   +F 
Sbjct: 1  MAEIDWPWQYSFPPFFTLQPHADTRSKQIAAWRSLVLEYYRTTKQAVIDVREVDTNPVFN 60

Query: 61 NPAISSIL 68
          N AI+  L
Sbjct: 61 NTAINRKL 68

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713990|ref|XP_003395516.1| PREDICTED: vacuolar protein-sorting-associated protein 25-like [Bombus terrestris]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++++WPWQY+FPPFFTLQP+ +TR KQL AW+ L+LEY++ TK  IIDI+E  ++ LF 
Sbjct: 1  MAEIEWPWQYSFPPFFTLQPHSDTRAKQLAAWKSLILEYYRITKQAIIDIREVHSSPLFN 60

Query: 61 NPAISSIL 68
          N AI+  L
Sbjct: 61 NTAINRKL 68

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418878|ref|XP_003491998.1| PREDICTED: vacuolar protein-sorting-associated protein 25-like [Bombus impatiens]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++++WPWQY+FPPFFTLQP+ +TR KQL AW+ L+LEY++ TK  IIDI+E  ++ LF 
Sbjct: 1  MAEIEWPWQYSFPPFFTLQPHSDTRAKQLAAWKSLILEYYRITKQSIIDIREVHSSPLFN 60

Query: 61 NPAISSIL 68
          N AI+  L
Sbjct: 61 NTAINRKL 68

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375118|gb|AEE62700.1| unknown [Dendroctonus ponderosae]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 53/67 (79%)

Query: 2  SDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
          +++ WPWQYNFPPFFTLQPN ETR KQ++AW+ L+L+Y K++K  +ID +EADN  LF N
Sbjct: 4  TEIAWPWQYNFPPFFTLQPNPETRAKQVQAWKALILDYCKQSKLYLIDAREADNGPLFNN 63

Query: 62 PAISSIL 68
           +I+  L
Sbjct: 64 ASINRKL 70

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48104740|ref|XP_395839.1| PREDICTED: vacuolar protein-sorting-associated protein 25 [Apis mellifera]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 54/68 (79%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++++WPWQY+FPPFFTLQP+ +TR KQL AW+ L+LEY++ TK  IID++E  ++ LF 
Sbjct: 1  MAEIEWPWQYSFPPFFTLQPHSDTRAKQLSAWKSLILEYYRITKQAIIDVREIHSSPLFN 60

Query: 61 NPAISSIL 68
          N AI+  L
Sbjct: 61 NTAINRKL 68

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849443|ref|XP_003700354.1| PREDICTED: vacuolar protein-sorting-associated protein 25-like [Megachile rotundata]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++++WPWQY+FPPFFTLQP+ ETR KQL AW+ L+LEY++ TK  IIDI+E  +  LF 
Sbjct: 1  MAEIEWPWQYSFPPFFTLQPHTETRAKQLAAWKSLILEYYRITKQSIIDIREVHSNPLFN 60

Query: 61 NPAISSIL 68
          N  I+  L
Sbjct: 61 NATINRKL 68

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025024|ref|XP_003696281.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein-sorting-associated protein 25-like [Apis florea]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 54/68 (79%)

Query: 1  MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
          M++++WPWQY+FPPFFTLQP+ +TR KQL AW+ L+LEY++ TK  +ID++E  ++ LF 
Sbjct: 1  MAEIEWPWQYSFPPFFTLQPHSDTRAKQLSAWKSLILEYYRITKQAVIDVREMHSSPLFN 60

Query: 61 NPAISSIL 68
          N AI+  L
Sbjct: 61 NTAINRKL 68

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
ZFIN|ZDB-GENE-050506-30	174	vps25 "vacuolar protein sortin	0.845	0.344	0.566	4.2e-15
FB|FBgn0022027	174	Vps25 "Vacuolar protein sortin	0.887	0.362	0.515	6.9e-15
UNIPROTKB|F1NGT6	176	VPS25 "Uncharacterized protein	0.788	0.318	0.553	1e-13
UNIPROTKB|Q9BRG1	176	VPS25 "Vacuolar protein-sortin	0.802	0.323	0.543	2.7e-13
MGI|MGI:106354	176	Vps25 "vacuolar protein sortin	0.802	0.323	0.543	2.7e-13
RGD|1584685	176	Vps25 "vacuolar protein sortin	0.802	0.323	0.543	2.7e-13
UNIPROTKB|Q5E9A6	176	VPS25 "Vacuolar protein-sortin	0.802	0.323	0.543	3.4e-13
UNIPROTKB|F1S1F4	1555	WNK4 "Uncharacterized protein"	0.802	0.036	0.543	1.1e-11
UNIPROTKB|E2RNW6	1566	WNK4 "Uncharacterized protein"	0.802	0.036	0.543	1.1e-11
TAIR|locus:504955551	179	VPS25 [Arabidopsis thaliana (t	0.929	0.368	0.411	9.4e-11

ZFIN|ZDB-GENE-050506-30 vps25 "vacuolar protein sorting 25 (yeast)" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
             +WPWQYNFPPFFTLQPN +TR+KQL AW  LVL Y +  K   +D+ EA  + +F N  I
Sbjct:     4 EWPWQYNFPPFFTLQPNVDTRQKQLAAWCSLVLSYCRHRKLYTLDVLEAQESPVFNNKKI 63

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0022027 Vps25 "Vacuolar protein sorting 25" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query:     1 MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
             M++ QWPW+Y FPPFFTLQP+EETR++QL+ W DL L+Y + T    + I +  N+ LF 
Sbjct:     1 MAEFQWPWEYTFPPFFTLQPHEETRQQQLKVWTDLFLKYLRHTNRFTLSIGD-QNSPLFH 59

Query:    61 NPAI 64
             N A+
Sbjct:    60 NEAL 63

GO:0010669 "epithelial structure maintenance" evidence=IMP

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IMP

GO:0016197 "endosomal transport" evidence=NAS;IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IEP

GO:0010797 "regulation of multivesicular body size involved in endosome transport" evidence=IDA

GO:0048803 "imaginal disc-derived male genitalia morphogenesis" evidence=IMP

UNIPROTKB|F1NGT6 VPS25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query:     6 WPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             WPWQY+FPPFFTLQPN ETR+KQL AW  L L Y ++ +   + ++EA ++ LF N
Sbjct:     7 WPWQYSFPPFFTLQPNGETRQKQLAAWCALALAYSRRQRLPAMTLREAQDSPLFAN 62

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9BRG1 VPS25 "Vacuolar protein-sorting-associated protein 25" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct:     6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 62

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

MGI|MGI:106354 Vps25 "vacuolar protein sorting 25 (yeast)" [Mus musculus (taxid:10090)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct:     6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 62

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1584685 Vps25 "vacuolar protein sorting 25 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct:     6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 62

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010008 "endosome membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5E9A6 VPS25 "Vacuolar protein-sorting-associated protein 25" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct:     6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLTFCRLHKQSSMTVMEAQESPLFNN 62

GO:0010008 "endosome membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1S1F4 WNK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct:    32 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 88

GO:0090188 "negative regulation of pancreatic juice secretion" evidence=IEA

GO:0050794 "regulation of cellular process" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E2RNW6 WNK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct:    25 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 81

GO:0090188 "negative regulation of pancreatic juice secretion" evidence=IEA

GO:0050794 "regulation of cellular process" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

TAIR|locus:504955551 VPS25 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 28/68 (41%), Positives = 46/68 (67%)

Query:     1 MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
             ++D + P  +N+PP+FTLQP  +TR+KQ++ W++L+L+Y K  K  +I ++E  +  LF 
Sbjct:     4 LADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEE--DFPLFS 61

Query:    61 NPAISSIL 68
             N AI   L
Sbjct:    62 NSAIDRSL 69

GO:0005737 "cytoplasm" evidence=ISM

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000814 "ESCRT II complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NWF4	VPS25_DANRE	No assigned EC number	0.5468	0.9014	0.3678	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
pfam05871	139	pfam05871, ESCRT-II, ESCRT-II complex subunit	1e-21

>gnl|CDD|218787 pfam05871, ESCRT-II, ESCRT-II complex subunit

 Score = 80.8 bits (200), Expect = 1e-21
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 8  WQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
            Y+FPPFFTLQPN ETRK+QL+AW  L+L+Y +  K   + + EA ++ LF N  I
Sbjct: 1  PIYSFPPFFTLQPNSETRKQQLQAWSSLILDYCRHHKIFSLSVLEAQDSPLFNNKKI 57

This family of conserved eukaryotic proteins are subunits of the endosome associated complex ESCRT-II which recruits transport machinery for protein sorting at the multivesicular body (MVB). This protein complex transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG4068|consensus	174		100.0
PF05871	139	ESCRT-II: ESCRT-II complex subunit; InterPro: IPR0	100.0

>KOG4068|consensus

Probab=100.00  E-value=3.4e-35  Score=202.25  Aligned_cols=69  Identities=46%  Similarity=0.897  Sum_probs=67.0

Q ss_pred             CCCCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCCCCCCCccccccCCCC
Q psy14016          3 DVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH   71 (71)
Q Consensus         3 ~f~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~~lF~N~~I~R~L~~e   71 (71)
                      .|+|||+|+||||||+|||.+||++|+++|++||++||||+|++.|+++++.+||||+|++|+|+||.|
T Consensus         1 ~f~wPw~Y~FPPffT~Qpn~~Tr~qQl~aW~~lil~ycr~~k~~smsI~~~~~s~LfnN~~l~R~Ls~~   69 (174)
T KOG4068|consen    1 MFAWPWQYSFPPFFTRQPNSNTRQQQLAAWIDLILQYCRHNKIWSMSIDEAQESPLFNNEKLQRRLSQE   69 (174)
T ss_pred             CCCCCcccCCCCceeecCCchhHHHHHHHHHHHHHHHHHhcCeEEEEecchhcccccchHHHhccCCHH
Confidence            489999999999999999999999999999999999999999999999999999999999999999964

>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II)

Probab=100.00  E-value=2.6e-35  Score=197.44  Aligned_cols=64  Identities=50%  Similarity=0.892  Sum_probs=56.8

Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCCCCCCCccccccCCCC
Q psy14016          8 WQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH   71 (71)
Q Consensus         8 ~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~~lF~N~~I~R~L~~e   71 (71)
                      |+|+||||||+|||++||++|+++|++|||+||||||+++|++.++.++|||+|++|||+|++|
T Consensus         1 ~~y~FPPFfT~Qpn~~Tr~~Ql~~W~~lIl~y~~~~k~~~l~~~e~~~~~lF~N~~I~R~L~~e   64 (139)
T PF05871_consen    1 WIYSFPPFFTLQPNPETREKQLELWSDLILDYCRHHKIFRLSLSEALESPLFNNESINRRLSPE   64 (139)
T ss_dssp             GGGGSGGGGS--SSHHHHHHHHHHHHHHHHHHHHHTT-SEEECHHHHCCCTTEETTTTEE--HH
T ss_pred             CccCCCCcceecCCHHHHHHHHHHHHHHHHHHHHHhceeeeecccccCCCCccCccccCCCCHH
Confidence            6899999999999999999999999999999999999999999988889999999999999864

ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
2zme_C	102	Integrated Structural And Functional Model Of The H		9e-13
3cuq_C	176	Integrated Structural And Functional Model Of The H		9e-13
1u5t_C	202	Structure Of The Escrt-Ii Endosomal Trafficking Com		7e-05

>pdb|2ZME|C Chain C, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 102

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
          +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct: 6  EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 62

>pdb|3CUQ|C Chain C, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 176

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
          +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N  +
Sbjct: 6  EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65
Query: 65 SSIL 68
             L
Sbjct: 66 QRKL 69

>pdb|1U5T|C Chain C, Structure Of The Escrt-Ii Endosomal Trafficking Complex Length = 202

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 10 YNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTK 44
          Y+FPP +T QPN  TR++Q+  W D++ +Y K  K
Sbjct: 8  YSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKK 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
3cuq_C	176	Vacuolar protein-sorting-associated protein 25; ES	4e-24
1xb4_A	202	VPS25, hypothetical 23.6 kDa protein in YUH1-URA8	3e-19

>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C Length = 176

 Score = 87.7 bits (217), Expect = 4e-24
 Identities = 32/67 (47%), Positives = 41/67 (61%)

Query: 2  SDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
             +WPWQY FPPFFTLQPN +TR+KQL AW  LVL + +  K   + + EA  + LF N
Sbjct: 3  MSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 62

Query: 62 PAISSIL 68
            +   L
Sbjct: 63 VKLQRKL 69

>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C Length = 202

 Score = 75.9 bits (186), Expect = 3e-19
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 19/79 (24%)

Query: 5  QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDI-------------- 50
            P  Y+FPP +T QPN  TR++Q+  W D++ +Y K  K   + +              
Sbjct: 3  ALPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGS 62

Query: 51 -----QEADNTALFFNPAI 64
                +  +  LF N  I
Sbjct: 63 TDNDDSKKISKNLFNNEDI 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3cuq_C	176	Vacuolar protein-sorting-associated protein 25; ES	100.0
1xb4_A	202	VPS25, hypothetical 23.6 kDa protein in YUH1-URA8	100.0

>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C

Probab=100.00  E-value=6.9e-39  Score=220.56  Aligned_cols=71  Identities=45%  Similarity=0.850  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCCCCCCCccccccCCCC
Q psy14016          1 MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH   71 (71)
Q Consensus         1 ~~~f~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~~lF~N~~I~R~L~~e   71 (71)
                      |++|+||++|+||||||+|||.+||++|+++|++|||+||||||+++|++.++.++|||+|++|+|+||+|
T Consensus         2 ~~~f~~P~~y~FPPFfTlQpn~~Tr~kQl~~W~~LIl~ycr~~k~~~l~~~~~~~~pLF~N~~I~R~Ls~e   72 (176)
T 3cuq_C            2 AMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVE   72 (176)
T ss_dssp             --CCCCCGGGGSGGGGSCCSSHHHHHHHHHHHHHHHHHHHHHHTCCEEEHHHHHTSTTSEETTTTEECCHH
T ss_pred             CCCCCCCcccCCCCeeeecCCHHHHHHHHHHHHHHHHHHHHHhCeeEeeccccccCCCcCCccccCcCCHH
Confidence            56899999999999999999999999999999999999999999999999988889999999999999964

>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C

Probab=100.00  E-value=5.3e-36  Score=209.79  Aligned_cols=67  Identities=31%  Similarity=0.561  Sum_probs=63.8

Q ss_pred             CCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCC-------------------CCCCCcccc
Q psy14016          5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNT-------------------ALFFNPAIS   65 (71)
Q Consensus         5 ~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~-------------------~lF~N~~I~   65 (71)
                      +||++|+||||||+|||.+||++||++|++|||+||||||+++|+++++.++                   |||+|++||
T Consensus         3 ~~P~~ysFPPFfTlQPn~~Tr~~Ql~~W~~LIL~ycr~~ki~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~   82 (202)
T 1xb4_A            3 ALPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQ   82 (202)
T ss_dssp             CSCSGGGCGGGTSCCSCHHHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTT
T ss_pred             CCCCccCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhCeeEeccccccccccccccccccccccccccCCCcCCcccc
Confidence            6999999999999999999999999999999999999999999999986665                   999999999


Q ss_pred             ccCCCC
Q psy14016         66 SILYAH   71 (71)
Q Consensus        66 R~L~~e   71 (71)
                      |+|++|
T Consensus        83 RrLs~e   88 (202)
T 1xb4_A           83 RSVSQV   88 (202)
T ss_dssp             EECCHH
T ss_pred             CcCCHH
Confidence            999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1xb4a1	124	a.4.5.54 (A:2-125) Vacuolar protein sorting-associ	3e-19

>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS25
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.8 bits (178), Expect = 3e-19
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 6  WPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEA 53
           P  Y+FPP +T QPN  TR++Q+  W D++ +Y K  K   + +   
Sbjct: 3  LPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGT 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1xb4a1	124	Vacuolar protein sorting-associated protein VPS25	100.0

>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS25
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-38  Score=206.03  Aligned_cols=67  Identities=31%  Similarity=0.573  Sum_probs=62.2

Q ss_pred             CCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCc-------------------CCCCCCCCcccc
Q psy14016          5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEA-------------------DNTALFFNPAIS   65 (71)
Q Consensus         5 ~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~-------------------~~~~lF~N~~I~   65 (71)
                      +||++|+||||||+|||++||++||++|++|||+||||||+++|+++++                   .++|||+|++||
T Consensus         2 ~fP~~ysFPPFFTlQPn~~Tr~kQl~~W~~LIL~ycr~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~   81 (124)
T d1xb4a1           2 ALPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQ   81 (124)
T ss_dssp             CSCSGGGCGGGTSCCSCHHHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTT
T ss_pred             CCCcccCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhceeeeeccccccccccccccccccccccccCCCCccCcccC
Confidence            6999999999999999999999999999999999999999999999875                   257899999999


Q ss_pred             ccCCCC
Q psy14016         66 SILYAH   71 (71)
Q Consensus        66 R~L~~e   71 (71)
                      |+|++|
T Consensus        82 R~Ls~e   87 (124)
T d1xb4a1          82 RSVSQV   87 (124)
T ss_dssp             EECCHH
T ss_pred             CcCCHH
Confidence            999964