Psyllid ID: psy14017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MAHIRPRYGDYLRVGISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG
Secondary Structure (PSIPRED)
cccccccccccHHHcEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEccccccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcc
Coil and Loop (DISEMBL)
mahirprygdylrvgisvrdlgglgrfglgltsedesiesaeirripqkyssqiaeacgptvtanflLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKpaldklng
Flexible Loop (DISEMBL)
mahirprygdylrvgisvrdlgGLGRFGlgltsedesiesAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGpiletnviqsqvkpaldklng
Low Complexity Region (SEG)
MAHIRPRYGDYLRVGISVRDlgglgrfglglTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG
Disordered region (IsUnstruct)
******RYGDYLRVGISVRDLGGLGRFGLGLT*************IPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ************
Disordered Region (DISOPRED)
***IRPRYGDYLRVGISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL**
Disordered Region (DISEMBL)
MAHIRPRYGDYLRVGISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG
Disordered Region (DISPRO)
**HIRPRYGDYLRVGISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHIRPRYGDYLRVGISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q7TNP2	601	Serine/threonine-protein	yes	N/A	0.521	0.099	0.666	2e-17
P30154	601	Serine/threonine-protein	yes	N/A	0.460	0.088	0.666	2e-17
Q4QQT4	601	Serine/threonine-protein	yes	N/A	0.460	0.088	0.666	2e-17
Q32PI5	589	Serine/threonine-protein	yes	N/A	0.469	0.091	0.639	4e-17
P54612	589	Serine/threonine-protein	yes	N/A	0.469	0.091	0.639	6e-17
Q76MZ3	589	Serine/threonine-protein	no	N/A	0.469	0.091	0.639	6e-17
P30153	589	Serine/threonine-protein	no	N/A	0.469	0.091	0.639	6e-17
P54613	602	Serine/threonine-protein	no	N/A	0.460	0.088	0.65	7e-17
P36179	591	Serine/threonine-protein	yes	N/A	0.530	0.103	0.688	2e-12
Q54QR9	584	Serine/threonine-protein	yes	N/A	0.547	0.107	0.428	8e-09

>sp|Q7TNP2|2AAB_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL
Sbjct: 520 LSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKL 579

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.
Mus musculus (taxid: 10090)

>sp|P30154|2AAB_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL
Sbjct: 520 LSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKL 579

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Homo sapiens (taxid: 9606)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL
Sbjct: 520 LSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKL 579

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPVLEKL 567

Query: 114 N 114
            
Sbjct: 568 T 568

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

Query: 114 N 114
            
Sbjct: 568 T 568

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

Query: 114 N 114
            
Sbjct: 568 T 568

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

Query: 114 N 114
            
Sbjct: 568 T 568

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+T+ +Q +VKP L KL
Sbjct: 521 LSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTDALQEEVKPVLQKL 580

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|P36179|2AAA_DROME Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster GN=Pp2A-29B PE=2 SV=4

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 47/61 (77%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CG  +T   LLPTVL +A D VANVRFNVAKTLQKI P LE +VI +QVKP LDKL
Sbjct: 510 LAEVCGTDITTKLLLPTVLLLAADPVANVRFNVAKTLQKISPFLEASVIDAQVKPTLDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q54QR9|2AAA_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%)

Query: 52  SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
           S ++   G  V ++ ++P +  M  D V N+RFNVAKT Q I P+L++ ++QS+VKP L 
Sbjct: 504 STLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLV 563

Query: 112 KLN 114
           KL+
Sbjct: 564 KLH 566

Scaffolding molecule which may coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
383860430	602	PREDICTED: serine/threonine-protein phos	0.530	0.101	0.721	2e-18
332020375	603	Serine/threonine-protein phosphatase 2A	0.530	0.101	0.704	3e-18
322787434	589	hypothetical protein SINV_04974 [Solenop	0.530	0.103	0.704	3e-18
328782568	590	PREDICTED: serine/threonine-protein phos	0.530	0.103	0.721	4e-18
156547500	590	PREDICTED: serine/threonine-protein phos	0.530	0.103	0.704	6e-18
307189141	601	Serine/threonine-protein phosphatase 2A	0.530	0.101	0.688	6e-18
307201783	590	Serine/threonine-protein phosphatase 2A	0.530	0.103	0.704	7e-18
156362396	586	predicted protein [Nematostella vectensi	0.556	0.109	0.640	3e-17
350402824	590	PREDICTED: serine/threonine-protein phos	0.530	0.103	0.704	4e-17
340728831	590	PREDICTED: serine/threonine-protein phos	0.530	0.103	0.704	4e-17

>gi|383860430|ref|XP_003705692.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Megachile rotundata]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE + +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTKVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPSAVQTQVKPVLDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020375|gb|EGI60796.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Acromyrmex echinatior]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP LE + +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTKVMLPTVLTMATDNVANVRFNVAKTLQRIGPFLEPSAVQTQVKPILDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787434|gb|EFZ13522.1| hypothetical protein SINV_04974 [Solenopsis invicta]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP LE + +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTKVMLPTVLTMATDNVANVRFNVAKTLQRIGPFLEPSAVQTQVKPILDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782568|ref|XP_001120202.2| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis mellifera] gi|380013196|ref|XP_003690652.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis florea]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 49/61 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE   +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTRVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPCAVQAQVKPVLDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547500|ref|XP_001600229.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Nasonia vitripennis]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP L+ N +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTEVMLPTVLAMANDNVANVRFNVAKTLQRIGPHLKPNAVQTQVKPVLDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189141|gb|EFN73589.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Camponotus floridanus]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 49/61 (80%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKT Q+IGP LE + +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTKVMLPTVLTMATDNVANVRFNVAKTFQRIGPFLEPSAVQTQVKPILDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201783|gb|EFN81456.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Harpegnathos saltator]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CGP +T   +LPTVL MA DNVANVRFNVAKTLQ+IGP LE + +Q+QVKP LDKL
Sbjct: 510 LAEVCGPEITTKVMLPTVLIMATDNVANVRFNVAKTLQRIGPFLEPSAVQTQVKPILDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156362396|ref|XP_001625764.1| predicted protein [Nematostella vectensis] gi|156212612|gb|EDO33664.1| predicted protein [Nematostella vectensis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 52  SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
           S +A+ CGP   +  +LP VLN+A DNVANVRFNVAKTLQKIGP+L+ + IQ+Q+KP LD
Sbjct: 506 SVLADVCGPENISKLMLPVVLNLATDNVANVRFNVAKTLQKIGPLLDASTIQAQIKPCLD 565

Query: 112 KLNG 115
           KLN 
Sbjct: 566 KLNA 569

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|350402824|ref|XP_003486616.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Bombus impatiens]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 48/61 (78%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CG  +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE   +Q+QVKP LDKL
Sbjct: 510 LAEVCGQEITTRVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPCAVQAQVKPVLDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728831|ref|XP_003402717.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Bombus terrestris]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 48/61 (78%)

Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +AE CG  +T   +LPTVL MA DNVANVRFNVAKTLQKIGP LE   +Q+QVKP LDKL
Sbjct: 510 LAEVCGQEITTRVMLPTVLGMATDNVANVRFNVAKTLQKIGPYLEPCAVQAQVKPVLDKL 569

Query: 114 N 114
           N
Sbjct: 570 N 570

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
UNIPROTKB|B3KQV6	410	PPP2R1A "Serine/threonine-prot	0.521	0.146	0.65	3.3e-16
FB|FBgn0260439	591	Pp2A-29B "Protein phosphatase	0.530	0.103	0.688	3.8e-16
UNIPROTKB|P30154	601	PPP2R1B "Serine/threonine-prot	0.521	0.099	0.666	3.9e-16
MGI|MGI:1920949	601	Ppp2r1b "protein phosphatase 2	0.521	0.099	0.666	3.9e-16
RGD|1304764	601	Ppp2r1b "protein phosphatase 2	0.521	0.099	0.666	3.9e-16
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.521	0.101	0.65	6.2e-16
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.521	0.101	0.65	6.2e-16
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.521	0.101	0.65	7.9e-16
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.521	0.101	0.65	7.9e-16
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.521	0.101	0.65	7.9e-16

UNIPROTKB|B3KQV6 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 207 (77.9 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct:   329 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 388

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

FB|FBgn0260439 Pp2A-29B "Protein phosphatase 2A at 29B" [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 42/61 (68%), Positives = 47/61 (77%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             +AE CG  +T   LLPTVL +A D VANVRFNVAKTLQKI P LE +VI +QVKP LDKL
Sbjct:   510 LAEVCGTDITTKLLLPTVLLLAADPVANVRFNVAKTLQKISPFLEASVIDAQVKPTLDKL 569

Query:   114 N 114
             N
Sbjct:   570 N 570

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0006470 "protein dephosphorylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0008287 "protein serine/threonine phosphatase complex" evidence=ISS;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

GO:0007098 "centrosome cycle" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0005814 "centriole" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P30154 PPP2R1B "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL
Sbjct:   520 LSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKL 579

GO:2001241 "positive regulation of extrinsic apoptotic signaling pathway in absence of ligand" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1920949 Ppp2r1b "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform" [Mus musculus (taxid:10090)]

 Score = 210 (79.0 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL
Sbjct:   520 LSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKL 579

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:2001241 "positive regulation of extrinsic apoptotic signaling pathway in absence of ligand" evidence=ISO

RGD|1304764 Ppp2r1b "protein phosphatase 2, regulatory subunit A, beta" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++EACG  +T   +LP VL MAGD VANVRFNVAK+LQKIGPIL+TN +Q +VKP L KL
Sbjct:   520 LSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTNALQGEVKPVLQKL 579

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:2001241 "positive regulation of extrinsic apoptotic signaling pathway in absence of ligand" evidence=IEA;ISO

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct:   508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPVLEKL 567

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct:   508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPVLEKL 567

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct:   508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 207 (77.9 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct:   508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query:    54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
             ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct:   508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32PI5	2AAA_BOVIN	No assigned EC number	0.6393	0.4695	0.0916	yes	N/A
P30154	2AAB_HUMAN	No assigned EC number	0.6666	0.4608	0.0881	yes	N/A
P36179	2AAA_DROME	No assigned EC number	0.6885	0.5304	0.1032	yes	N/A
Q7TNP2	2AAB_MOUSE	No assigned EC number	0.6666	0.5217	0.0998	yes	N/A
P54612	2AAA_PIG	No assigned EC number	0.6393	0.4695	0.0916	yes	N/A
Q4QQT4	2AAB_RAT	No assigned EC number	0.6666	0.4608	0.0881	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.002

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 33.3 bits (77), Expect = 0.002
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 67 LLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97
          LLP +L +  D    VR   A+ L  +  +L
Sbjct: 1  LLPLLLELLNDPDPEVREAAAEALGALAEVL 31

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG0211|consensus	759		99.37
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.71
KOG0211|consensus	759		97.37
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.35
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.91
KOG1243|consensus	690		96.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.16
KOG2171|consensus	1075		95.85
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.67
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.23
KOG1240|consensus	1431		95.07
KOG1240|consensus	1431		94.95
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.55
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.29
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.07
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	92.95
PRK09687	280	putative lyase; Provisional	92.68
KOG2137|consensus	700		92.23
PTZ00429	746	beta-adaptin; Provisional	91.99
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.86
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	91.33
PRK09687	280	putative lyase; Provisional	91.15
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.05
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.51
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	88.4
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.88
KOG2023|consensus	885		87.81
PTZ00429	746	beta-adaptin; Provisional	87.79
KOG2137|consensus	700		86.77
KOG1242|consensus	569		86.06
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	83.95
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	83.65
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	82.47
KOG1243|consensus	690		82.24
KOG1820|consensus	815		81.99
KOG2259|consensus	823		81.97
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	81.59
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	80.05

>KOG0211|consensus

Probab=99.37  E-value=9.6e-13  Score=117.75  Aligned_cols=75  Identities=37%  Similarity=0.484  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      +-.+|+|++++|..+++++|++++.++++|++..+.+|++||||||+||.|..+.+.+.....++.|+|+++.|.
T Consensus       570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~  644 (759)
T KOG0211|consen  570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS  644 (759)
T ss_pred             ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999875

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.09  E-value=2.5e-06  Score=47.25  Aligned_cols=30  Identities=33%  Similarity=0.449  Sum_probs=27.3

Q ss_pred             HHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         67 LLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        67 ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      |+|.++++++|+.|+||.+++++|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.71  E-value=5.9e-05  Score=45.68  Aligned_cols=53  Identities=25%  Similarity=0.323  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         41 AEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      +.||.+.+.++..++...+..  .....++|.+..+++|+-+.||-+++.+|..|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            579999999998877555432  36789999999999999999999999999864

...

>KOG0211|consensus

Probab=97.37  E-value=6.9e-05  Score=67.91  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHH---HHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVA---KTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVA---K~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      -+++|||.+.++.++.+++.++++.+.+.++|.++.+++|..|.||.|..   ..++..-...+...+++..+|++.+|+
T Consensus       409 d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~  488 (759)
T KOG0211|consen  409 DNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA  488 (759)
T ss_pred             cccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc
Confidence            36789999999999999999999999999999999999999999999999   556666777777899999999998875

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.35  E-value=0.00078  Score=46.59  Aligned_cols=59  Identities=22%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh
Q psy14017         43 IRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV  101 (115)
Q Consensus        43 VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~  101 (115)
                      +|.+-+.++...+-.++++.  -.++|+|.|++.+.|+.+.||+.++.+|-.+++......
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~   62 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI   62 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888888888888764  458999999999999999999999999999998776543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.23  E-value=0.00075  Score=43.24  Aligned_cols=49  Identities=18%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      -.++.+|..++.++..+.        ....+|.+..+++|+.|+||..++.+|..++
T Consensus        11 ~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen   11 DPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG   59 (88)
T ss_dssp             SSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred             CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            356889998888877433        2377999999999999999999999999885

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.91  E-value=0.0037  Score=41.07  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017         41 AEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL  113 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL  113 (115)
                      ..+|...+.++..++..   .....+...++|.++++++|+.++||.+++.+|..++......   ..+..+.|.|.++
T Consensus        21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~   99 (120)
T cd00020          21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNL   99 (120)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHH
Confidence            78999999999999853   4455566699999999999999999999999999998765321   2334466666554

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1243|consensus

Probab=96.34  E-value=0.01  Score=53.56  Aligned_cols=78  Identities=17%  Similarity=0.222  Sum_probs=72.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         37 SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        37 ~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      +....++|+-++.-+.+..+.+.++++.++|+|.+...+.|..|-+|-...|++..+++.+...+++.++.-++.+++
T Consensus       340 ~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q  417 (690)
T KOG1243|consen  340 KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQ  417 (690)
T ss_pred             cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhC
Confidence            345669999999999999999999999999999999999999999999999999999999999888888888887764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.16  E-value=0.019  Score=42.60  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      ++.||.+++.+++.|... +.--+..+++.-++.++.|+.|+||-.+...+.++....+++.+.+.+..++..|.
T Consensus        38 ~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~  111 (178)
T PF12717_consen   38 DPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN  111 (178)
T ss_pred             CHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence            588999999999888754 33445577778888899999999999999999999888767767666666665553

>KOG2171|consensus

Probab=95.85  E-value=0.021  Score=53.79  Aligned_cols=72  Identities=25%  Similarity=0.311  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHH
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALD  111 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~  111 (115)
                      +...|-+.+.||..+++-+++-.  ...+|+|+|++.++||.|.||..+..++.+++..+.+.   .-.+.+.|.|.
T Consensus       361 ~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~  437 (1075)
T KOG2171|consen  361 EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALI  437 (1075)
T ss_pred             CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHH
Confidence            45789999999999999887544  44889999999999999999999999999998887654   33355555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.67  E-value=0.027  Score=42.27  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhC--h-----hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         38 IESAEIRRIPQKYSSQIAEACG--P-----TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~--~-----eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      --|+.+|..++.++..+....+  .     ....+.+.|.+.+++.|+-|+||-..-+++..+.+..+..
T Consensus       142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            3578999999999999888777  2     2234679999999999999999999999999998777653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.23  E-value=0.046  Score=45.39  Aligned_cols=71  Identities=27%  Similarity=0.340  Sum_probs=49.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      -+++.+|...+.++..++   .+ .+.+.++|.|.+++.|+.|.||-+++-++.++.+.- ++.+...+.|.+.+|
T Consensus        90 ~~n~~~~~lAL~~l~~i~---~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~l  160 (526)
T PF01602_consen   90 SPNPYIRGLALRTLSNIR---TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQL  160 (526)
T ss_dssp             SSSHHHHHHHHHHHHHH----SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhhhc---cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhh
Confidence            356778876666666555   33 466788999999999999999999999988887663 344333255655554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1240|consensus

Probab=95.07  E-value=0.037  Score=52.97  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=66.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc------cchhhhhcHHH
Q psy14017         35 DESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL------ETNVIQSQVKP  108 (115)
Q Consensus        35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l------~~~~v~s~IkP  108 (115)
                      -..+...+-|...+.-+..+|..++.|...+.+||.+..++.|+.+.||-.+..+|.++-..+      +...+.+-+.|
T Consensus       431 IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP  510 (1431)
T KOG1240|consen  431 IRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP  510 (1431)
T ss_pred             HHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence            334555677778888889999999999999999999999999999999999999888774433      44577888999


Q ss_pred             HHHhhh
Q psy14017        109 ALDKLN  114 (115)
Q Consensus       109 ~L~kL~  114 (115)
                      .|+.|.
T Consensus       511 ~L~~l~  516 (1431)
T KOG1240|consen  511 HLNHLL  516 (1431)
T ss_pred             hhHhhh
Confidence            988764

>KOG1240|consensus

Probab=94.95  E-value=0.038  Score=52.94  Aligned_cols=74  Identities=9%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK  112 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k  112 (115)
                      +.+.||++++++|..|+...|++.....||+.++..++|..++-|-....++--++-.++...+++-++|.|++
T Consensus       590 ~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q  663 (1431)
T KOG1240|consen  590 SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ  663 (1431)
T ss_pred             CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence            34799999999999999999999999999999999999999999988888887777888888889999999875

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.55  E-value=0.18  Score=34.46  Aligned_cols=60  Identities=17%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhC-hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACG-PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~-~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      -+.+|.--+.-+..|...-+ .......++.+++.+++|+-|=|=+|+.|+|..++.....
T Consensus        16 ~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen   16 LPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             CcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            36799888888888887777 6667789999999999999999999999999999977653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.29  E-value=0.15  Score=37.78  Aligned_cols=54  Identities=13%  Similarity=0.038  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      .|.+|..+.-++..|+-..+  .+.+..+|.+.++++|+.|.||-++..+|..+..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~   54 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL   54 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            36799999999999998776  6778999999999999999999999999998854

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.07  E-value=0.13  Score=35.46  Aligned_cols=54  Identities=15%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      +..-||-..+.|+-.++.+...+.+  -.+|.+.+.+++.|+.||||-.+ ..|..+
T Consensus        39 ~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   39 QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence            3467999999999999999887775  47899999999999999999654 555443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.95  E-value=0.27  Score=40.85  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      +++.||.+++.|+..+... .++.+...++|.+.++++|+.|.|+.++...+..+
T Consensus       126 ~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  126 PSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            4679999999999999977 44544433899999999999999999999999999

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=92.68  E-value=0.22  Score=39.89  Aligned_cols=46  Identities=24%  Similarity=0.182  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      ++.||..++.++..+.        .+..+|.++.+++|+.++||-.++.+|..+
T Consensus       141 ~~~VR~~a~~aLg~~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        141 STNVRFAVAFALSVIN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             CHHHHHHHHHHHhccC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence            5679988888885443        134567777777777777777777777766

>KOG2137|consensus

Probab=92.23  E-value=0.32  Score=44.26  Aligned_cols=66  Identities=14%  Similarity=0.244  Sum_probs=56.6

Q ss_pred             HHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         49 KYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        49 ~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      .-...|.+.+.+|.+.++|||++....+|...+|-=.+.+.+-.+++.+|-..+.+.|.|.|..|+
T Consensus       372 e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~  437 (700)
T KOG2137|consen  372 ENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLA  437 (700)
T ss_pred             hhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcch
Confidence            334457888899999999999999999999999999999999999999998888899999887763

>PTZ00429 beta-adaptin; Provisional

Probab=91.99  E-value=0.32  Score=44.41  Aligned_cols=58  Identities=10%  Similarity=0.041  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      .+++||.+.+.|+-++-..-+.-.....+++.+.+|+.|+.|.|..|+..+|..+.+.
T Consensus       152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            5699999999999999765443323467889999999999999999999999999654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.86  E-value=0.34  Score=27.50  Aligned_cols=34  Identities=12%  Similarity=0.155  Sum_probs=30.2

Q ss_pred             hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         61 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        61 eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      .++....+|.+++|++++.+.|+.+++-+|..|+
T Consensus         7 ~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    7 AIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4566779999999999999999999999998775

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=91.33  E-value=0.25  Score=32.14  Aligned_cols=53  Identities=23%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc---cchhhhhcHHHHHHhh
Q psy14017         61 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL---ETNVIQSQVKPALDKL  113 (115)
Q Consensus        61 eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l---~~~~v~s~IkP~L~kL  113 (115)
                      +.+...++|.++++++|+.+++|.+++.++..++...   ....++..+.|.|.++
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~   57 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL   57 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH
Confidence            3456679999999999999999999999999998652   2224444566665543

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=91.15  E-value=0.58  Score=37.50  Aligned_cols=46  Identities=11%  Similarity=0.018  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      ..||.+.++++..+..        +.+++.+.++++|+.|.||...+.+|.+++
T Consensus        37 ~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg   82 (280)
T PRK09687         37 SLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLG   82 (280)
T ss_pred             HHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            3455555555544432        244444455555555555555555555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=91.05  E-value=1.3  Score=33.16  Aligned_cols=58  Identities=21%  Similarity=0.165  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      ++..+|.++..|+..+...++  ...+-+.+.+....++..|.||..+++.+..+....+
T Consensus       106 ~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen  106 SKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             ccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            456899999999999999877  1222348888899999999999999999999987776

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.99  E-value=1.1  Score=37.32  Aligned_cols=70  Identities=24%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhhhChhHHh---HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh---cHHHHHHhh
Q psy14017         43 IRRIPQKYSSQIAEACGPTVTA---NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS---QVKPALDKL  113 (115)
Q Consensus        43 VR~t~l~aI~~La~~l~~eii~---~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s---~IkP~L~kL  113 (115)
                      .|...+.|+..+-..++++++.   .+++|++++.++=+.++|+..+..+|..+...- ++.+++   .+.|.|.+|
T Consensus       339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~l  414 (415)
T PF12460_consen  339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLKL  414 (415)
T ss_pred             hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhc
Confidence            7788889999999999999877   679999999998888899999999999887654 344444   456666554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=90.51  E-value=0.55  Score=29.67  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCC-CcchhHHHHHHHH
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDN-VANVRFNVAKTLQ   91 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~-VPNVRfNVAK~L~   91 (115)
                      +++.||.+++.++..+.        .+..+|.+.++++|+ ...||..++++|.
T Consensus        43 ~~~~vr~~a~~aL~~i~--------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   43 EDPMVRRAAARALGRIG--------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             SSHHHHHHHHHHHHCCH--------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            56789999999999885        356888888877664 5557999988874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=88.40  E-value=0.75  Score=42.26  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      ++.||.+.+.++..+..        +.-+|.+..+++|+.++||..++.+|..+
T Consensus       820 d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        820 AWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             ChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            46777777777765432        24458888888899999999998888876

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=87.88  E-value=0.63  Score=25.17  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=17.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEAC   58 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l   58 (115)
                      +++.||.+.++|+..+++.+
T Consensus        12 ~~~~VR~~a~~~l~~i~~~~   31 (31)
T PF02985_consen   12 PSPEVRQAAAECLGAIAEHC   31 (31)
T ss_dssp             SSHHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHhhC
Confidence            47899999999999998764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2023|consensus

Probab=87.81  E-value=0.74  Score=42.41  Aligned_cols=58  Identities=21%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      .||-.|.-...|+++....-.+..  -..+++-.+-.+++|+.|+||-||+.+|--+-+.
T Consensus       186 ~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  186 PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence            488899999999999887666544  3478899999999999999999999999766543

>PTZ00429 beta-adaptin; Provisional

Probab=87.79  E-value=1.3  Score=40.56  Aligned_cols=75  Identities=19%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         35 DESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      |-.-.+|.+|...+.++..   ... ..+.+.+++.+.+.++|+.|-||-++|-++.++-..-..-..+..+.+.|.+|
T Consensus       113 Dl~d~Np~IRaLALRtLs~---Ir~-~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L  187 (746)
T PTZ00429        113 DTTNSSPVVRALAVRTMMC---IRV-SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL  187 (746)
T ss_pred             HcCCCCHHHHHHHHHHHHc---CCc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH
Confidence            3344678999766655444   333 35788899999999999999999999999999865432211233445555544

>KOG2137|consensus

Probab=86.77  E-value=1.9  Score=39.45  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhhhChhHHhHhHHHHHhhh-cCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017         43 IRRIPQKYSSQIAEACGPTVTANFLLPTVLNM-AGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK  112 (115)
Q Consensus        43 VR~t~l~aI~~La~~l~~eii~~~ILPivl~L-~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k  112 (115)
                      +-..++..+...++.++-..+.+.|+|-+-.+ .+-...-|+.||+-|++.+++.+|.-.+-+++.|.+++
T Consensus       405 iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~  475 (700)
T KOG2137|consen  405 IQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC  475 (700)
T ss_pred             hHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33456677777788888777888888888775 56667778888888888888888777777777777664

>KOG1242|consensus

Probab=86.06  E-value=1.9  Score=38.60  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhhh-Chh---HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         44 RRIPQKYSSQIAEAC-GPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        44 R~t~l~aI~~La~~l-~~e---ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      |+++. .+--++.-+ ++.   .....++|-+-..+.|++|+||=..+|+|..+.+.++.+.. ....|.|.+.
T Consensus       390 r~t~~-IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~  461 (569)
T KOG1242|consen  390 RKTAI-IIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSET  461 (569)
T ss_pred             hhHHH-HHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHh
Confidence            55544 344444433 332   34578889999999999999999999999999998887766 6677777653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=83.95  E-value=1.8  Score=39.87  Aligned_cols=49  Identities=20%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      .+.||...+.++..+.        ....+|.+.++++|+.++||..++++|..+.+.
T Consensus       634 d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~  682 (897)
T PRK13800        634 DPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEV  682 (897)
T ss_pred             CHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            3456655555554443        245678888888999999999999999888543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=83.65  E-value=4.7  Score=32.16  Aligned_cols=63  Identities=13%  Similarity=0.033  Sum_probs=49.1

Q ss_pred             chhHHHHHHHHHHHHHHHhh-hChhHHhH-hHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         38 IESAEIRRIPQKYSSQIAEA-CGPTVTAN-FLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~-l~~eii~~-~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      ..-|..+..+++++...+.. ..++.+.+ -.+|++.++++||.|.||-.+..++.-++...+++
T Consensus        24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            34466777777888777663 44565554 78999999999999999999999999888766554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=82.47  E-value=3.8  Score=35.33  Aligned_cols=75  Identities=25%  Similarity=0.298  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--hhhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--~v~s~IkP~L~kL  113 (115)
                      +++.||.-++.++..++..-+   .-.....++|.++.++.|+..+|.-.+++.|..+++.-..-  .+.+...+.|.++
T Consensus        89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l  168 (503)
T PF10508_consen   89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSL  168 (503)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHH
Confidence            467999999999888764321   22345889999999999999999999999999998754321  2233335555554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1243|consensus

Probab=82.24  E-value=1.6  Score=39.92  Aligned_cols=58  Identities=12%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             HhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017         55 AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK  112 (115)
Q Consensus        55 a~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k  112 (115)
                      +..++.+...+.++|.+++|.+-+.--||+-....+.+.++.+..+.++++|.|.+..
T Consensus       319 ~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~  376 (690)
T KOG1243|consen  319 GKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVAL  376 (690)
T ss_pred             hhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHh
Confidence            3345556677889999999999999999999999999999999999999999998754

>KOG1820|consensus

Probab=81.99  E-value=3.5  Score=38.34  Aligned_cols=66  Identities=14%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS  104 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s  104 (115)
                      -+|..|+-|.......-..++    ...+.+.+.|.+++..+|..++||-+...++..+...++...++.
T Consensus       383 knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k  452 (815)
T KOG1820|consen  383 KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKK  452 (815)
T ss_pred             CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            578899988766665555444    666889999999999999999999999999999999988765543

>KOG2259|consensus

Probab=81.97  E-value=2.9  Score=38.59  Aligned_cols=73  Identities=27%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             eecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         19 RDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      ---|.-|-|=-||  |||   .-.||.+.-.++..||..-  -.+...-+.++.+|.+|++..||+.+.++|..|+..+.
T Consensus       370 I~sGACGA~VhGl--EDE---f~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~  442 (823)
T KOG2259|consen  370 IPSGACGALVHGL--EDE---FYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA  442 (823)
T ss_pred             ccccccceeeeec--hHH---HHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence            3345566666666  443   5789999999999998542  24677889999999999999999999999999998764

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=81.59  E-value=1.5  Score=33.58  Aligned_cols=55  Identities=18%  Similarity=0.145  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhhhChhHHh---HhHHHHH------------hhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017         43 IRRIPQKYSSQIAEACGPTVTA---NFLLPTV------------LNMAGDNVANVRFNVAKTLQKIGPIL   97 (115)
Q Consensus        43 VR~t~l~aI~~La~~l~~eii~---~~ILPiv------------l~L~kD~VPNVRfNVAK~L~~Ia~~l   97 (115)
                      +|++.+.|+..++..+++..+.   ..++|..            .-+.+||.|.||..++..+..+-+..
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs   71 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS   71 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence            7999999999999997766542   4444443            33679999999999999999886544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=80.05  E-value=5.7  Score=28.68  Aligned_cols=49  Identities=10%  Similarity=0.106  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhhhC--hhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         46 IPQKYSSQIAEACG--PTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        46 t~l~aI~~La~~l~--~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      .+++=|..++...+  ..++. -..-..|..|+.++.|+||+++.++++++.
T Consensus        63 Vac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   63 VACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            33444444444332  33332 345678899999999999999999999874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		4e-18
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		4e-18
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		4e-18
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		4e-18
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		4e-18
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		5e-18
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		5e-18
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		2e-16

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 151 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 210
Query: 114 N 114
Sbjct: 211 T 211

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 501 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560
Query: 114 N 114
Sbjct: 561 T 561

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 499 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 558
Query: 114 N 114
Sbjct: 559 T 559

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 114 N 114
Sbjct: 568 T 568

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 114 N 114
Sbjct: 567 T 567

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 114 N 114
Sbjct: 568 T 568

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 114 N 114
Sbjct: 567 T 567

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 54  IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           ++E CG  +T    LPTVL  AGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 501 LSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-15
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query: 52  SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
           + ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+
Sbjct: 505 NVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE 564

Query: 112 KL 113
           KL
Sbjct: 565 KL 566

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 53  QIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112
            IA+          ++PT+   A D    VR+ VA    ++   +   + ++ + PA   
Sbjct: 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288

Query: 113 L 113
           L
Sbjct: 289 L 289

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 39  ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98
           ++  +RR       + A+        + ++P   N+A D   +VR    +    I  +L 
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235

Query: 99  TNVIQSQVKPALDKL 113
              +++ V P L + 
Sbjct: 236 QEDLEALVMPTLRQA 250

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 52  SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
             ++   G   T   LLP  L    D    VR N+   L  +  ++    +   + PA+ 
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408

Query: 112 KL 113
           +L
Sbjct: 409 EL 410

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 12/75 (16%), Positives = 26/75 (34%)

Query: 39  ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98
               IR        ++ E  G       ++P VL M+GD     R      +  +  +  
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512

Query: 99  TNVIQSQVKPALDKL 113
            ++    + P + ++
Sbjct: 513 QDITTKHMLPTVLRM 527

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.75
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.72
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.12
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.01
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.82
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.82
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.74
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.6
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.48
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.43
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.37
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.15
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.01
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.96
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	95.96
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.86
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.84
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	95.84
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.8
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.75
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.73
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.7
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.67
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.63
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.55
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	95.52
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	95.5
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.44
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.32
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	94.81
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	93.99
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	93.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	93.38
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.34
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	92.8
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	92.55
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	92.35
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	91.59
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	91.41
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	90.93
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.78
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	90.67
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	90.38
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	90.09
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	89.61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	89.42
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	89.34
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	88.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	88.76
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	88.13
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	87.61
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	87.5
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	86.53
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	86.43
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	85.93
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	85.84
2x1g_F	971	Cadmus; transport protein, developmental protein,	85.28
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	84.33
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	83.16
2x1g_F	971	Cadmus; transport protein, developmental protein,	81.29
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	80.77
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	80.09

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.75  E-value=2e-08  Score=80.19  Aligned_cols=76  Identities=53%  Similarity=0.782  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      .+..+|.+.+.++..++..++.+...+.++|.++++++|+.||||.+++++|..+...++.+...+.+.|.|.+|.
T Consensus       492 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~  567 (588)
T 1b3u_A          492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT  567 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999999999999999999999999999988877788999998864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.04  E-value=7e-06  Score=65.42  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      +++.||.+++.++..++..++.+...+.++|.+..+++|+.++||..++++|..+++.++.....+.+.|.+.++
T Consensus       176 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  250 (588)
T 1b3u_A          176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA  250 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            367889999999999988888888888889998888888888999888888888888776655666777777665

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.72  E-value=4e-05  Score=59.24  Aligned_cols=75  Identities=21%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh-hhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV-IQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~-v~s~IkP~L~kL  113 (115)
                      ++..+|.++++++..++..+..+.   ....++|.++++++|+.|+||..++.++..++..++... ..+.+.|.+..|
T Consensus       378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~L  456 (462)
T 1ibr_B          378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  456 (462)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            357899999999999998766432   347899999999999999999999999999999887643 234555555443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.12  E-value=0.0013  Score=48.06  Aligned_cols=60  Identities=13%  Similarity=0.131  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      .+..||...+.++..|+..++.+  ...+.++|.++..++|+.+.||-.+..+|..+.+...
T Consensus        69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~  130 (242)
T 2qk2_A           69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS  130 (242)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence            46789999999999999988875  3457789999999999999999999999998887654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.01  E-value=0.0014  Score=48.00  Aligned_cols=63  Identities=11%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhChh----HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPT----VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI  102 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~e----ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v  102 (115)
                      ++.+|..++..+..+....+++    .....++|.+..+++|+.++||-.+.+++..++..++.+.+
T Consensus       146 ~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          146 NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence            6899999999999987665543    24468999999999999999999999999999999886543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.82  E-value=0.0024  Score=53.22  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChh----HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPT----VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~e----ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      +++.||.+++.++..++..++.+    ...+.++|.+++.++|+ |+||.++++++..+++.++
T Consensus       423 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  485 (861)
T 2bpt_A          423 QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence            36899999999999999998753    46789999999999998 9999999999999987765

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.82  E-value=0.0031  Score=48.51  Aligned_cols=74  Identities=15%  Similarity=0.060  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh---hhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI---QSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v---~s~IkP~L~kL  113 (115)
                      .+..+|.+.+.++..++..++ +.+...++|.+..+++|+.+++|..+..++..++...+.+.+   -.++.|.|.++
T Consensus       340 ~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~  416 (462)
T 1ibr_B          340 DDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL  416 (462)
T ss_dssp             TCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred             ccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999 567789999999999999999999999999999976553221   25567766553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0036  Score=47.26  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhCh--hH---Hh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGP--TV---TA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~--ei---i~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      ++++|+.++.+|..++...+.  +.   .. +.++|.+.+++.|+.+.||=...+++..++..++...    +.|.+.+|
T Consensus       159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~----~~p~l~~L  234 (249)
T 2qk1_A          159 TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT----FVKTLEHL  234 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG----GHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHH
Confidence            689999999999999988774  32   34 8899999999999999999999999999999998754    44444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.74  E-value=0.0017  Score=55.46  Aligned_cols=61  Identities=20%  Similarity=0.147  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      ++..+|.+.+.++..+++.++..  .....++|.++++++|+.|.||-.++.++..+++.+..
T Consensus       371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  433 (852)
T 4fdd_A          371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS  433 (852)
T ss_dssp             SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            36899999999999999877643  24578999999999999999999999999999987654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.60  E-value=0.0038  Score=53.29  Aligned_cols=62  Identities=16%  Similarity=0.043  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhCh---hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~---eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      +++.||.+++.++..++..++.   +.....++|.+++.++|+.|.||-+++.++..+++..+..
T Consensus       412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            4689999999999999998764   3456789999999999999999999999999998777653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.48  E-value=0.0028  Score=42.54  Aligned_cols=49  Identities=20%  Similarity=0.291  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      +++.||...+.++..+..        +..+|.++++++|+.|.||..++.+|..+..
T Consensus        54 ~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~  102 (131)
T 1te4_A           54 EDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG  102 (131)
T ss_dssp             SCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            457899998888776652        3458888999999999999999999999873

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.48  E-value=0.0065  Score=50.74  Aligned_cols=73  Identities=14%  Similarity=0.039  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh---hhcHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI---QSQVKPALDK  112 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v---~s~IkP~L~k  112 (115)
                      .+..+|.+.+.++..++..++. .+...++|.+...++|+.+++|..++.++..++.....+.+   -.++.|.+.+
T Consensus       340 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~  415 (876)
T 1qgr_A          340 DDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE  415 (876)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999985 56779999999999999999999999999999987763322   2345555543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.43  E-value=0.0079  Score=42.45  Aligned_cols=45  Identities=20%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      +.||...+.++..+..        ...+|.+.++++|+.|.||..++.+|..+
T Consensus        95 ~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           95 GWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            4455555555444432        12344444444444444444444444444

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.37  E-value=0.0057  Score=51.10  Aligned_cols=61  Identities=21%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      .+..+|.+.+.++..++..++++.   ....++|.++++++|+.|.||-.++.++..++..+..
T Consensus       378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence            357899999999999998887443   3467999999999999999999999999999987754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.15  E-value=0.0084  Score=49.86  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=33.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      +++.+|...+.++..+   .. ..+.+.++|.+.++++|+.|.||..++.++..+..
T Consensus        98 ~n~~ir~~AL~~L~~i---~~-~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~  150 (591)
T 2vgl_B           98 PNPLIRALAVRTMGCI---RV-DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD  150 (591)
T ss_dssp             SSHHHHHHHHHHHHTC---CS-GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcC---Ch-HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            4567775554444333   23 33556677777777777777777777777777765

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.11  E-value=0.017  Score=40.45  Aligned_cols=46  Identities=22%  Similarity=0.203  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      +.||...+.++..+..        ...+|.+.++++|+.|.||..++.+|..+.
T Consensus        90 ~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           90 GWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4455555555444322        124444444455555555555555554443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.04  E-value=0.019  Score=40.42  Aligned_cols=47  Identities=26%  Similarity=0.283  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      ++.||...+.++..+..        ...+|.+.++++|+.|.||..++.+|..+.
T Consensus        63 ~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~  109 (211)
T 3ltm_A           63 DAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGWVRQSAAVALGQIG  109 (211)
T ss_dssp             CHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            34555555555544431        234455555555555555555555555554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.01  E-value=0.0087  Score=53.08  Aligned_cols=73  Identities=12%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhChh------------------------------------------HHhHhHHHHHhhhcCC
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPT------------------------------------------VTANFLLPTVLNMAGD   77 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~e------------------------------------------ii~~~ILPivl~L~kD   77 (115)
                      ++.+|.++++|+..++...|.+                                          .+.+.++|.+.+.++|
T Consensus       582 ~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~  661 (1230)
T 1u6g_C          582 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK  661 (1230)
T ss_dssp             CHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh
Confidence            4578888888888888776543                                          2336677777778888


Q ss_pred             CCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017         78 NVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK  112 (115)
Q Consensus        78 ~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k  112 (115)
                      +.+++|.|+++++..++...+.....+.+.|.+..
T Consensus       662 ~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~  696 (1230)
T 1u6g_C          662 NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDE  696 (1230)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence            89999999999999998877654444566666644

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.96  E-value=0.029  Score=39.11  Aligned_cols=74  Identities=20%  Similarity=0.144  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|...+.++..++..   .-...+....+|.++++++++.++||-.++.+|..++..-+.   ..++....|.|.++
T Consensus        25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  104 (210)
T 4db6_A           25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  104 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence            468999999999999842   223345567899999999999999999999999999843221   23444556666554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=95.96  E-value=0.023  Score=39.74  Aligned_cols=46  Identities=26%  Similarity=0.286  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      +.+|...+.++..+..        ...+|.+.++++|+.|.||..++++|..+.
T Consensus        59 ~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  104 (201)
T 3ltj_A           59 AWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGWVRQSAAVALGQIG  104 (201)
T ss_dssp             HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4555555555444321        134455555555555555555555555544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.86  E-value=0.03  Score=39.06  Aligned_cols=74  Identities=20%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|..++.++..++..   .-...+....+|.++++++++.+++|.+++.+|..++..-..   ..++....|.|.++
T Consensus        67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  146 (210)
T 4db6_A           67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  146 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH
Confidence            578999999999988742   223345567899999999999999999999999999864322   13345566766654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=95.84  E-value=0.023  Score=50.37  Aligned_cols=74  Identities=9%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--------hhhhcHHHHH
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--------VIQSQVKPAL  110 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--------~v~s~IkP~L  110 (115)
                      .++.+|.+.+.++..++..++. ...+.++|.++..+.|+.++||-.+++++..++..++..        ...+++.|.|
T Consensus        60 ~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L  138 (1230)
T 1u6g_C           60 KNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL  138 (1230)
T ss_dssp             SSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHH
Confidence            4689999999999999998876 466889999999999999999999999999999887754        1346777777


Q ss_pred             Hhh
Q psy14017        111 DKL  113 (115)
Q Consensus       111 ~kL  113 (115)
                      .+.
T Consensus       139 ~~~  141 (1230)
T 1u6g_C          139 TSA  141 (1230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=95.84  E-value=0.022  Score=41.81  Aligned_cols=55  Identities=20%  Similarity=0.120  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      +++.||..++.++..++...+  .....++|.+.++++|+.|.||..++.+|..+..
T Consensus       103 ~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A          103 KSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            457899999999888874322  1245678888888888888888888888887653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.80  E-value=0.038  Score=38.95  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDK  112 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~k  112 (115)
                      +++.+|..++.++..++..   .-........+|.++++++|+.+++|.+++.+|..++..-+.   ..++..+.|.|.+
T Consensus        98 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  177 (252)
T 4hxt_A           98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK  177 (252)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHH
Confidence            3578999999999999842   223344557899999999999999999999999999864332   2344556677665


Q ss_pred             h
Q psy14017        113 L  113 (115)
Q Consensus       113 L  113 (115)
                      +
T Consensus       178 l  178 (252)
T 4hxt_A          178 L  178 (252)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.0086  Score=44.98  Aligned_cols=74  Identities=22%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHH-----hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh------hhhcHH
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV------IQSQVK  107 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii-----~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~------v~s~Ik  107 (115)
                      -+|.+|..++..+..+-...|...+     .+.+++.+.+++.|+.|+||=...+.+..+..+++...      +-+.++
T Consensus       151 Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk  230 (278)
T 4ffb_C          151 KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK  230 (278)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSC
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC
Confidence            4789999999999998877765443     35567778889999999999999999999998887532      224566


Q ss_pred             HHHHh
Q psy14017        108 PALDK  112 (115)
Q Consensus       108 P~L~k  112 (115)
                      |.+.+
T Consensus       231 p~~~k  235 (278)
T 4ffb_C          231 PIQVK  235 (278)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.73  E-value=0.0091  Score=39.94  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I   93 (115)
                      .++.||...+.++..+..        ...+|.+.++++|+.+.||..++.+|.+|
T Consensus        85 ~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           85 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             CCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            456899999999887762        45789999999999999999999988654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.70  E-value=0.044  Score=38.59  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|..++.++..++..   .-...+....+|.++++++|+.+.+|.+++.+|..++..-+.   ...+....|.|.++
T Consensus        57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  136 (252)
T 4hxt_A           57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL  136 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            378999999999999853   333445567899999999999999999999999999853221   13344556666554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.67  E-value=0.035  Score=46.27  Aligned_cols=59  Identities=12%  Similarity=0.018  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      +...+|.+.+.++..++..++ +.+...++|.+..+++|+.+.+|-.++.++..++...+
T Consensus       343 ~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~  401 (861)
T 2bpt_A          343 DDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD  401 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             ccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence            345899999999999999998 55678999999999999999999999999999997665

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.027  Score=42.40  Aligned_cols=60  Identities=12%  Similarity=0.181  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhC-hhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACG-PTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~-~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      .+..||...++|+..|+..++ ++.   -...++|.++..++|.-++||=.+..++..+.+.++
T Consensus        73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~  136 (249)
T 2qk1_A           73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD  136 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence            467899999999999999998 553   346789999999999999999999999999988774

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.55  E-value=0.039  Score=48.12  Aligned_cols=73  Identities=21%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc----------chhhhhcHHHH
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE----------TNVIQSQVKPA  109 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~----------~~~v~s~IkP~  109 (115)
                      ++.+|.+++.++.+.++.+.++ ..+.++|.+++.+.|+.+-||..++.++..+.+..+          .+.+...+.+.
T Consensus       471 ~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l  549 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL  549 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred             CceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence            8899999999999999998765 578899999999999989999999999999987543          33455555555


Q ss_pred             HHhh
Q psy14017        110 LDKL  113 (115)
Q Consensus       110 L~kL  113 (115)
                      +.+|
T Consensus       550 l~~L  553 (960)
T 1wa5_C          550 LKNL  553 (960)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=95.52  E-value=0.029  Score=41.15  Aligned_cols=48  Identities=13%  Similarity=0.035  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      +.||...+.++..+..      -....+|.+.++++|+.++||..++.+|..+.
T Consensus       173 ~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          173 GDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            3455555555544421      12345566666666666666666666666554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=95.50  E-value=0.034  Score=42.70  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc---chhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~---~~~v~s~IkP~L~kL  113 (115)
                      ++.+|...+.++..++..   .....+....+|.+.++++|+.|+||..++.+|..++....   ...++..+.|.|.++
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  157 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL  157 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence            578999999999998852   22234457899999999999999999999999999986432   113344556666554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=95.44  E-value=0.024  Score=47.11  Aligned_cols=58  Identities=14%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL   97 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l   97 (115)
                      .++.||.+.+.|+..+... +++.+. ..++|.+.++++|+.|.||.+++.+|..+++.-
T Consensus       133 ~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          133 EDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             SCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence            5789999999999999984 455544 378999999999999999999999999998753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.32  E-value=0.039  Score=39.45  Aligned_cols=75  Identities=20%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDK  112 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~k  112 (115)
                      .++.+|..++.++..++..-.   ........+|.++++++|+.++||.+++.+|..++..-+..   .++..+.|.|.+
T Consensus       108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  187 (252)
T 4db8_A          108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ  187 (252)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH
Confidence            357899999999999986533   22455679999999999999999999999999998643221   334556666665


Q ss_pred             h
Q psy14017        113 L  113 (115)
Q Consensus       113 L  113 (115)
                      +
T Consensus       188 l  188 (252)
T 4db8_A          188 L  188 (252)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.06  E-value=0.082  Score=37.69  Aligned_cols=73  Identities=21%  Similarity=0.138  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017         41 AEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL  113 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL  113 (115)
                      +.+|..++.++..++..   .-...+....+|.++++++++.+.||-+++.+|..++..-...   .++....|.|.++
T Consensus        68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  146 (252)
T 4db8_A           68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  146 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence            78999999999988852   2233344569999999999999999999999999998654332   4455567777654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.96  E-value=0.028  Score=43.19  Aligned_cols=74  Identities=14%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch----hhhhcHHHHHHh
Q psy14017         40 SAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQSQVKPALDK  112 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~----~v~s~IkP~L~k  112 (115)
                      ++.+|..++.++..++....   ...+...++|.++++++|+.++||.+++.++..++......    .++..+.|.|.+
T Consensus       289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~  368 (450)
T 2jdq_A          289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD  368 (450)
T ss_dssp             SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence            57899999999999985211   22334689999999999999999999999999997542222    334556777766


Q ss_pred             h
Q psy14017        113 L  113 (115)
Q Consensus       113 L  113 (115)
                      +
T Consensus       369 l  369 (450)
T 2jdq_A          369 L  369 (450)
T ss_dssp             G
T ss_pred             H
Confidence            4

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=94.81  E-value=0.045  Score=43.05  Aligned_cols=74  Identities=12%  Similarity=0.057  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc--cchhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL--ETNVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l--~~~~v~s~IkP~L~kL  113 (115)
                      ..+++..++.++..|+..-.  ........+|.+.++++|+.+|||.+++++|..++..-  .....+....+.|.+|
T Consensus       432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l  509 (529)
T 1jdh_A          432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL  509 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence            45677778888888875422  22456778899999999999999999999999987431  1112344455666655

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=93.99  E-value=0.035  Score=46.62  Aligned_cols=53  Identities=8%  Similarity=-0.038  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      .++.+|...+.++..++   + ..+.+.++|.+.++++|+.|.||-+++.++.++..
T Consensus       119 ~n~~vr~lAL~~L~~i~---~-~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~  171 (618)
T 1w63_A          119 STQFVQGLALCTLGCMG---S-SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR  171 (618)
T ss_dssp             SSSHHHHHHHHHHHHHC---C-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHhcC---C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            45667766666555554   2 23556777777777777777777777777777654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=93.92  E-value=0.15  Score=40.87  Aligned_cols=60  Identities=7%  Similarity=-0.084  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhCh------hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGP------TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~------eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      .++.+|..++.++..++...++      ..+...++|.+..+++++.|+||.+++.+|..+....+
T Consensus       395 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            3568999999999999876543      33456799999999999999999999999999876543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=93.38  E-value=0.16  Score=39.90  Aligned_cols=57  Identities=18%  Similarity=0.079  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      ++.+|..++.++..++.........+.++|.+.++++++.++||.+++.+|..++..
T Consensus       240 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            567888899999999877655556678999999999999999999999999999764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.34  E-value=0.21  Score=39.91  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCCCC-cchhHHHHHHHHHhcccccc---hhhhhcHHHHHH
Q psy14017         40 SAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGDNV-ANVRFNVAKTLQKIGPILET---NVIQSQVKPALD  111 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD~V-PNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~  111 (115)
                      ++.+|...+.++..++..-.    ...+...++|.++++++++- |++|+.++.+|..++..-..   ..++....|.|.
T Consensus        87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~  166 (528)
T 4b8j_A           87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence            46788888888888865433    34566789999999999886 99999999999999874221   134445666666


Q ss_pred             hh
Q psy14017        112 KL  113 (115)
Q Consensus       112 kL  113 (115)
                      ++
T Consensus       167 ~l  168 (528)
T 4b8j_A          167 KL  168 (528)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=92.80  E-value=0.27  Score=39.40  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|..++.++..++..   .....+...++|.++.+++++.+.||..++.+|..++.....   ..++..+.|.|.++
T Consensus       312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  391 (530)
T 1wa5_B          312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL  391 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            468899999999888743   223344568999999999999999999999999999863221   12344566666553

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=92.55  E-value=0.32  Score=38.79  Aligned_cols=75  Identities=17%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhh--ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEAC--GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l--~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL  113 (115)
                      .++.+|..++.++..|+..-  ........++|.+.++++++.++|+.+++.+|..++...+..   .++..+.|.|.++
T Consensus       215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l  294 (528)
T 4b8j_A          215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (528)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence            46789999999999998752  334456889999999999999999999999999998654321   2344556666554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=92.35  E-value=0.13  Score=43.18  Aligned_cols=56  Identities=13%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      .++.||.+.+.|+..+... .++. .+.++|.+.+++.|+.|.|+.+++..|..+++.
T Consensus       154 ~~~~VRk~A~~al~~l~~~-~p~~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          154 SNSYLRKKAALCAVHVIRK-VPEL-MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-CGGG-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHHHHHHHH-ChHH-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence            5789999999999999975 4454 458999999999999999999999999999864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.93  E-value=0.21  Score=45.51  Aligned_cols=70  Identities=16%  Similarity=0.033  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      .++++|..++.|+..++.--+.    ..++.++.++++|+++.||.+++.+|..++.--. +...+.+...+.+|
T Consensus       624 ~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn-na~~~rva~~l~~L  693 (963)
T 4ady_A          624 HNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT-EKLNPQVADINKNF  693 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC-TTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc-cccchHHHHHHHHH
Confidence            4589999999999888754333    5667788888999999999999999999975332 22223455555544

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=91.59  E-value=0.44  Score=36.92  Aligned_cols=89  Identities=15%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             ecCCcccccc-cCCCccccchhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHhc
Q psy14017         20 DLGGLGRFGL-GLTSEDESIESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        20 ~~~~~~~~~~-~~~~~~~~~~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia   94 (115)
                      ..||+-.+=- -|.+     +++.+|...+.++..++..   +-..++....+|.++++++ |+.++||-+++.+|..++
T Consensus        79 ~~G~l~~Lv~~lL~s-----~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~  153 (296)
T 1xqr_A           79 QLSGMHLLVGRYLEA-----GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV  153 (296)
T ss_dssp             HTTHHHHHHHTTTTC-----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            3566554422 2333     4679999999999999853   3334555679999999998 568999999999999997


Q ss_pred             ccccc---hhhhhcHHHHHHhh
Q psy14017         95 PILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        95 ~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ..-..   ..++....|.|.++
T Consensus       154 ~~~~~~~~~~~~~ggi~~L~~l  175 (296)
T 1xqr_A          154 REQEAGLLQFLRLDGFSVLMRA  175 (296)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCcHHHHHHHHCCCHHHHHHH
Confidence            53322   23344566666554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=91.41  E-value=0.18  Score=42.65  Aligned_cols=53  Identities=11%  Similarity=0.166  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhc--CCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMA--GDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~--kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      +++.+|...+.++..+..   + .+.+.++|.+.+++  .|+.|.||-+++-++.++.+
T Consensus       123 ~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          123 RNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             CCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            456777666666655532   2 36677777777777  77888888777777777765

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=90.93  E-value=0.84  Score=36.97  Aligned_cols=93  Identities=19%  Similarity=0.143  Sum_probs=60.4

Q ss_pred             cCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhh---ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017         21 LGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEAC---GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL   97 (115)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l---~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l   97 (115)
                      -|++-.+=-=+.+.+.+.....+...++.++..++..-   ..-.....++|.+.++++++.++|+.+++.+|..++..-
T Consensus       184 ~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~  263 (510)
T 3ul1_B          184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP  263 (510)
T ss_dssp             TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred             cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch
Confidence            34443332234455555455556666677777776432   223345789999999999999999999999999998654


Q ss_pred             cch---hhhhcHHHHHHhh
Q psy14017         98 ETN---VIQSQVKPALDKL  113 (115)
Q Consensus        98 ~~~---~v~s~IkP~L~kL  113 (115)
                      ...   ..+..+.|.|.+|
T Consensus       264 ~~~~~~i~~~g~i~~Lv~l  282 (510)
T 3ul1_B          264 NERIEMVVKKGVVPQLVKL  282 (510)
T ss_dssp             HHHHHHHHTTTCHHHHHHH
T ss_pred             hhhHHHHHhcccchhhhhh
Confidence            321   3345566666654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.78  E-value=0.51  Score=40.51  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      ++.+|.+++.++.+.+..+... ...+.++|.++..++|  |.|+-.++.++..+++..+.
T Consensus       502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~  560 (963)
T 2x19_B          502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY  560 (963)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999987632 4677899999998887  89999999999999876653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=90.67  E-value=0.46  Score=39.40  Aligned_cols=57  Identities=18%  Similarity=0.079  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      ++.+|..++.++..|+..-......+.++|.++++++++.++||-+++.+|..++..
T Consensus       237 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            577888999999999876555556678999999999999999999999999998764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=90.38  E-value=0.55  Score=36.38  Aligned_cols=76  Identities=11%  Similarity=0.084  Sum_probs=55.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhh-hcCCCCcchhHHHHHHHHHhccccc---chhhhhcHHHHHH
Q psy14017         38 IESAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLN-MAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALD  111 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~-L~kD~VPNVRfNVAK~L~~Ia~~l~---~~~v~s~IkP~L~  111 (115)
                      -.+...|...+..+..+.+..+  .+....-.+|.++. +++++.|+||-.++.++..++..-+   ...++....|.|.
T Consensus        51 ~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll  130 (296)
T 1xqr_A           51 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  130 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence            3455688888888888887544  23444567899999 9999999999999999999986432   1244555666665


Q ss_pred             hh
Q psy14017        112 KL  113 (115)
Q Consensus       112 kL  113 (115)
                      +|
T Consensus       131 ~L  132 (296)
T 1xqr_A          131 RL  132 (296)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=90.09  E-value=0.55  Score=40.48  Aligned_cols=57  Identities=18%  Similarity=0.079  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      ++.++..++.++..|+...........++|.++++++++.++||.+++.+|..++..
T Consensus       373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            345777778888888876655555678999999999999999999999999999764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=89.61  E-value=0.37  Score=40.70  Aligned_cols=58  Identities=7%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhhChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         38 IESAEIRRIPQKYSSQIAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      -.+++||.+.+.|+-.+.. ..++.+. +.+.+.+.+++.|+.|.|..++...+..+++.
T Consensus       159 d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          159 DTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             SSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            3589999999999999998 5566554 38999999999999999999999999988754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=89.42  E-value=0.77  Score=38.02  Aligned_cols=74  Identities=18%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|...+.++..|+..-.  ..+.....+|.++++++++.+.+|++++.+|..++..-+.   ...+....|.|.++
T Consensus        70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l  148 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  148 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence            56788888888887775321  2233456899999999999999999999999999754322   23345667766654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=89.34  E-value=1.3  Score=35.83  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             ecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhh---ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         20 DLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEAC---GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l---~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      +.|++-.+=-=+.+.+.+.....+...++.++..++..-   ..-.....++|.+.++++++.++|+.+++.+|..++..
T Consensus       202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~  281 (529)
T 3tpo_A          202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  281 (529)
T ss_dssp             HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence            344443332234444444444555556666777666432   22345578999999999999999999999999998764


Q ss_pred             ccch---hhhhcHHHHHHhh
Q psy14017         97 LETN---VIQSQVKPALDKL  113 (115)
Q Consensus        97 l~~~---~v~s~IkP~L~kL  113 (115)
                      -...   .+...+.|.|.+|
T Consensus       282 ~~~~~~~v~~~g~i~~Lv~l  301 (529)
T 3tpo_A          282 PNERIEMVVKKGVVPQLVKL  301 (529)
T ss_dssp             CHHHHHHHHTTTCHHHHHHH
T ss_pred             hhhhHHHHHhccchHHHHHH
Confidence            3221   3445566666654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=88.84  E-value=0.74  Score=35.88  Aligned_cols=60  Identities=20%  Similarity=0.056  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHH---HHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLL---PTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~IL---Pivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      -|.-+|..|+..+..+-+..|..  ....+   |.+.+++.|+.++||=.+..++..+-...|.+
T Consensus       179 KN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          179 KNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            35789999999999999999976  45678   99999999999999999999999887777654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=88.76  E-value=1.2  Score=36.15  Aligned_cols=57  Identities=14%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      ++.++...+.|+..+|..   ....++..-.+|.++++++++.++||-+++.+|..|+..
T Consensus       114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d  173 (510)
T 3ul1_B          114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD  173 (510)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            467888899999999742   112344456899999999999999999999999999753

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=88.13  E-value=0.55  Score=36.52  Aligned_cols=68  Identities=9%  Similarity=0.004  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         42 EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        42 ~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      -||-.++.++..++...++|    ..+|.+...++|+.++||--+...+...+.......-.+.+.|+|..|
T Consensus       119 rVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L  186 (240)
T 3l9t_A          119 RVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL  186 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh
Confidence            46666666666666544444    255666677777777777776666544333222122234455555554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=87.61  E-value=0.85  Score=40.19  Aligned_cols=61  Identities=10%  Similarity=-0.056  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhCh-hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGP-TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~-eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      +.+.+|.+++.++.+.+..+.. ......+++.++..+.|+.|.||-.++.++..+++..+.
T Consensus       512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4556776788899988876553 235677888888899999999999999999999987654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=87.50  E-value=1.3  Score=38.07  Aligned_cols=74  Identities=19%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|..++.++..|+..-.  ..+.....+|.++++++++.+.||..++.+|..++..-+.   ...+..+.|.|.++
T Consensus       206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l  284 (780)
T 2z6g_A          206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  284 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence            67889999999988875421  2344467999999999999999999999999999754322   13345566666654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=86.53  E-value=1.1  Score=35.87  Aligned_cols=73  Identities=12%  Similarity=-0.021  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         41 AEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      +.++...+.++..++..-.   ..+.....+|.+.++++++.+++++.++.+|..|+..-+.   ..++.-..|.|.+|
T Consensus        16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l   94 (457)
T 1xm9_A           16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL   94 (457)
T ss_dssp             THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence            4678888888888874322   2566678899999999999999999999999999864111   13345556666654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=86.43  E-value=0.89  Score=38.70  Aligned_cols=74  Identities=14%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhC--hhHHhHhHH-HHHhhhcCCCCcchhHHHHHHHHHhcccccch----hhhhcHHHHHHh
Q psy14017         40 SAEIRRIPQKYSSQIAEACG--PTVTANFLL-PTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQSQVKPALDK  112 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~--~eii~~~IL-Pivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~----~v~s~IkP~L~k  112 (115)
                      ++..|...+.|+..|+..-.  +....+.++ |++.+++.|+.+.||-.++-+|..|+..-+.+    .+.+.|.|.|..
T Consensus        47 ~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~  126 (684)
T 4gmo_A           47 DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEH  126 (684)
T ss_dssp             CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHH
Confidence            45789999999999986321  223445555 55677999999999999999999987654443    345567666654


Q ss_pred             h
Q psy14017        113 L  113 (115)
Q Consensus       113 L  113 (115)
                      +
T Consensus       127 ~  127 (684)
T 4gmo_A          127 A  127 (684)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=85.93  E-value=2  Score=34.82  Aligned_cols=57  Identities=4%  Similarity=-0.007  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH----HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei----i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      +..+|..++.|+..++.....+.    +...++|.+.+|++.+.++++.+++.+|..|.+.
T Consensus       390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            45788999999999887656553    3467899999999999999999999999887543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=85.84  E-value=1.9  Score=34.04  Aligned_cols=75  Identities=9%  Similarity=0.038  Sum_probs=54.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhh--ChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc--cc--chhhhhcHHHH
Q psy14017         38 IESAEIRRIPQKYSSQIAEAC--GPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI--LE--TNVIQSQVKPA  109 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l--~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~--l~--~~~v~s~IkP~  109 (115)
                      ..++.+|...+.++..|+..-  .+..+  ..-.+|.++++++.+.++++.+++.+|..++..  -+  ....+....|.
T Consensus        95 ~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~  174 (354)
T 3nmw_A           95 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA  174 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHH
Confidence            357789999999999997431  23333  345799999999999999999999999999763  11  12344555666


Q ss_pred             HHh
Q psy14017        110 LDK  112 (115)
Q Consensus       110 L~k  112 (115)
                      |.+
T Consensus       175 Lv~  177 (354)
T 3nmw_A          175 LME  177 (354)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=85.28  E-value=1.3  Score=38.14  Aligned_cols=56  Identities=2%  Similarity=-0.079  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      .+.||.+.+.++..+++.+..+ .....++|.++..+ |  |.|+-.++.++..+++..+
T Consensus       519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~  575 (971)
T 2x1g_F          519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ  575 (971)
T ss_dssp             CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999998743 35677888888877 5  9999999999999997665

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=84.33  E-value=2.6  Score=33.67  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=63.0

Q ss_pred             eeecCCcccccccCCCccccchhHHHHHHHHHHHHHHHh---hhChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHh
Q psy14017         18 VRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAE---ACGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKI   93 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~---~l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~I   93 (115)
                      +.+.||+-.+---|.+.     ++.++...+.++..|+.   ..-..++..-.+|.++++++ ++.++++.+++.+|..+
T Consensus        40 i~~~g~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL  114 (457)
T 1xm9_A           40 VYQLGGICKLVDLLRSP-----NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL  114 (457)
T ss_dssp             HHHTTHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            45667766665455543     45788888899998884   22233445667999999999 88999999999999999


Q ss_pred             cccccc--hhhhhcHHHHHHhh
Q psy14017         94 GPILET--NVIQSQVKPALDKL  113 (115)
Q Consensus        94 a~~l~~--~~v~s~IkP~L~kL  113 (115)
                      +..-+.  ..++ ...|.|.++
T Consensus       115 a~~~~~~~~i~~-g~i~~Lv~l  135 (457)
T 1xm9_A          115 SSTDELKEELIA-DALPVLADR  135 (457)
T ss_dssp             HTSSSTHHHHHH-HHHHHHHHH
T ss_pred             hcCHHhHHHHHh-ccHHHHHHH
Confidence            865221  1344 666666654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=83.16  E-value=4.4  Score=30.49  Aligned_cols=72  Identities=11%  Similarity=0.014  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc-cc--hhhhhcHHHHHHhh
Q psy14017         42 EIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL-ET--NVIQSQVKPALDKL  113 (115)
Q Consensus        42 ~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l-~~--~~v~s~IkP~L~kL  113 (115)
                      .++...+.++..|+..   ....+...-.+|.++++++.+.++++++++.+|..|+..- ++  ...+.--.|.|.+|
T Consensus        25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~l  102 (233)
T 3tt9_A           25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQV  102 (233)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHH
Confidence            5666666777777743   2234555678899999999999999999999999998632 21  13344455555554

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=81.29  E-value=1.8  Score=37.37  Aligned_cols=60  Identities=10%  Similarity=-0.069  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhc-CCCCcchhHHHHHHHHHhcccccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMA-GDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~-kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      +...|.+.++++..+++.+..+.  ....+++.+..+. +|+.|-||..++.++.++++.+..
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~  539 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME  539 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-
T ss_pred             cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc
Confidence            44689999999999999887543  3455677555555 478999999999999999988864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=80.77  E-value=6.7  Score=35.78  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhhhChhHH---hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHH
Q psy14017         41 AEIRRIPQKYSSQIAEACGPTVT---ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD  111 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~l~~eii---~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~  111 (115)
                      -+.+++.+.++..|+... ++.+   ...++|.+...+.|.=|+|.-..-+++.+++..+++..++.. .|.|.
T Consensus       148 w~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~-~~~~~  219 (986)
T 2iw3_A          148 WQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERF-IPSLI  219 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGG-HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhh-HHHHH
Confidence            477889999999999776 4444   478999999999999999999999999999999999877553 44443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=80.09  E-value=3.5  Score=32.52  Aligned_cols=61  Identities=8%  Similarity=-0.057  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      +..++..++.++..++..   .-..++..-.+|.+.++++++.+++|-+++.+|..++..-..+
T Consensus       276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            345778888888888731   2233445677999999999999999999999999998764433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-17
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	9e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-05

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 3e-17
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query: 52  SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
           + ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+
Sbjct: 505 NVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE 564

Query: 112 KL 113
           KL
Sbjct: 565 KL 566

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 9e-06
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 42  EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV 101
           E+     +         G     + LLP + ++A      VR    ++L+ I      + 
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 102 IQSQVKPALDKLNG 115
           +++   P + +L G
Sbjct: 123 LEAHFVPLVKRLAG 136

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 31  LTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL 90
           L +ED  +    I+++     S IA A G   T + LLP + +   D    V   +A+ L
Sbjct: 19  LRNEDVQLRLNSIKKL-----STIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQL 72

Query: 91  QKIGPILETNVIQSQVKPALDKL 113
                ++        + P L+ L
Sbjct: 73  GTFTTLVGGPEYVHCLLPPLESL 95

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 52  SQIAEACGPTVTANFL---LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 108
             I E   P+     +   +PT++ +  D    VR   A T+ +I  +L    I      
Sbjct: 390 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 449

Query: 109 AL 110
            L
Sbjct: 450 PL 451

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.26
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.97
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.13
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.85
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.32
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.27
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.1
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.11
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.01
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	94.82
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.7
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.18
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	92.92
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.22
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	92.2
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	92.08
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	91.76
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	91.67
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	91.08
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	90.65
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	90.35
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	89.98
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	89.81
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	88.47
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	83.83
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	83.59

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5e-12  Score=99.68  Aligned_cols=76  Identities=53%  Similarity=0.782  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN  114 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~  114 (115)
                      .+..+|+++++|+..+++.++.+.+.++++|.++++++|++||||++++|+|..+.+.++.+.+++.++|+|++|.
T Consensus       492 ~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~  567 (588)
T d1b3ua_         492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT  567 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHc
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999999885

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.3e-06  Score=64.53  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=60.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      .++.||.+++.++..++..++.+.+.+.++|.+..+.+|+.+.||..+++++..++..++.+...+.+.|.+.++
T Consensus       176 ~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~  250 (588)
T d1b3ua_         176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA  250 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHh
Confidence            467888888888888888888888888888888888888888888888888888887776666666677776654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.2e-06  Score=61.22  Aligned_cols=75  Identities=23%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh-hhcHHHHHHhhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI-QSQVKPALDKLN  114 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v-~s~IkP~L~kL~  114 (115)
                      +..+|.+.+.++..+++.+..+.   ....++|.++++++|+.|.||.++++++.++++.+..... .+.+.|.+..|.
T Consensus       378 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         378 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            46899999999999998776554   4578999999999999999999999999999988865543 344666666653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.13  E-value=0.00024  Score=45.02  Aligned_cols=49  Identities=20%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      +++.||...+.++..+.        ....+|.+.++++|+.|+||.+++.+|.++..
T Consensus        34 ~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~   82 (111)
T d1te4a_          34 EDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG   82 (111)
T ss_dssp             SCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc
Confidence            45789998888775432        24567899999999999999999999998863

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0034  Score=45.22  Aligned_cols=75  Identities=15%  Similarity=0.052  Sum_probs=60.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh---hhcHHHHHHhh
Q psy14017         38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI---QSQVKPALDKL  113 (115)
Q Consensus        38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v---~s~IkP~L~kL  113 (115)
                      .....+|...+.++..++..++.+ +.+.++|++.+.++|+.+++|..+..+|..++.......+   -.++.|.|.++
T Consensus       338 ~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~  415 (458)
T d1ibrb_         338 DDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL  415 (458)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred             cccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence            444578999999999999999866 5689999999999999999999999999999876544322   34566666543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0016  Score=53.20  Aligned_cols=61  Identities=20%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      +..+|.+.++|+..+++.+....  ...+++|.++.+++|+.|.||-.++.++.++++.+...
T Consensus       408 ~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~  470 (888)
T d1qbkb_         408 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ  470 (888)
T ss_dssp             SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSS
T ss_pred             hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            46899999999999887654332  34788999999999999999999999999998876543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.10  E-value=0.0027  Score=39.81  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHH
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQK   92 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~   92 (115)
                      ++.||..++.++..+..        +..+|.+.++++|+.|.||-.++++|++
T Consensus        66 ~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          66 SGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             CTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            56899999999887643        4678999999999999999999998864

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0079  Score=41.13  Aligned_cols=50  Identities=12%  Similarity=-0.083  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      .++.||.+.+.++..+..        +..+|.++++++|+.|.||..++.+|..+...
T Consensus        31 ~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          31 HNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             SSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            578999999998877642        46789999999999999999999999888643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.011  Score=41.68  Aligned_cols=57  Identities=12%  Similarity=0.049  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017         39 ESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP   95 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~   95 (115)
                      .++.+|...+.++..|+..   .-..+.....+|.+.++++++.|+||.+++.+|..++.
T Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1          14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            4678999999999999842   33445667789999999999999999999999999974

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.015  Score=47.11  Aligned_cols=62  Identities=16%  Similarity=0.034  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      +++.||.+++.++..+++.+..+.   ..+.++|.+++.+.|+.|.||-.++++|..+.+..+..
T Consensus       448 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~  512 (888)
T d1qbkb_         448 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  512 (888)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            478999999999999998765433   45679999999999999999999999999998766543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.022  Score=43.90  Aligned_cols=62  Identities=16%  Similarity=0.177  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      ++...|.+...++..++..++.+.   ..++++|.+..++.|+.|.||-.+++++..+++.+...
T Consensus       381 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  445 (861)
T d2bpta1         381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES  445 (861)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchh
Confidence            345788888888888888777654   44689999999999999999999999999998776543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.069  Score=41.02  Aligned_cols=60  Identities=20%  Similarity=0.105  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET   99 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~   99 (115)
                      +..+|..++.++..++..++.+.  ..+.++|.++..++|+.+.||..++..+..++..++.
T Consensus       611 ~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~  672 (861)
T d2bpta1         611 SAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE  672 (861)
T ss_dssp             GGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            45678899999999999998764  3478999999999999999999999999988877654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.1  Score=36.59  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             eecCCcccc-cccCCCccccchhHHHHHHHHHHHHHHHhhh---ChhHHhHhHHHHHhhhc-CCCCcchhHHHHHHHHHh
Q psy14017         19 RDLGGLGRF-GLGLTSEDESIESAEIRRIPQKYSSQIAEAC---GPTVTANFLLPTVLNMA-GDNVANVRFNVAKTLQKI   93 (115)
Q Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l---~~eii~~~ILPivl~L~-kD~VPNVRfNVAK~L~~I   93 (115)
                      ..+||+--. ..-++++     ++.+|...+.++..++..-   -........+|.+++++ +|+.|.+|.+++.++..+
T Consensus        55 ~~~gg~~~ll~~ll~s~-----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l  129 (264)
T d1xqra1          55 CQLSGMHLLVGRYLEAG-----AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL  129 (264)
T ss_dssp             HHTTHHHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence            345665432 2334443     4789999999999999642   23455678899999988 588999999999999999


Q ss_pred             cccccch---hhhhcHHHHHHh
Q psy14017         94 GPILETN---VIQSQVKPALDK  112 (115)
Q Consensus        94 a~~l~~~---~v~s~IkP~L~k  112 (115)
                      +...+..   ..+....|.|.+
T Consensus       130 ~~~~~~~~~~~~~~~gi~~L~~  151 (264)
T d1xqra1         130 VREQEAGLLQFLRLDGFSVLMR  151 (264)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHH
T ss_pred             hccchhhHHHHHHhhhhhHHHH
Confidence            8655432   233444555544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.11  Score=42.66  Aligned_cols=69  Identities=10%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHh--hh-ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHH
Q psy14017         41 AEIRRIPQKYSSQIAE--AC-GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL  110 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~--~l-~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L  110 (115)
                      +.+|-..++.+...-.  .. -.+....++++.++++++|+.|+||-.+.|+|..+...+..+.+ ..+.+.|
T Consensus        17 ~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-~~l~~~L   88 (1207)
T d1u6gc_          17 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-ETIVDTL   88 (1207)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-HHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHH
Confidence            5688665554443211  11 12345778999999999999999999999999999998876544 3344443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.12  Score=40.04  Aligned_cols=61  Identities=21%  Similarity=0.166  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN  100 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~  100 (115)
                      +...|.+.+.++..++..+..+.   ....++|.+...++|+.|.||..++.++..+++.+...
T Consensus       379 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  442 (876)
T d1qgra_         379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  442 (876)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh
Confidence            45677788888877776665443   44688999999999999999999999999998776543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.27  Score=38.93  Aligned_cols=59  Identities=20%  Similarity=0.094  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE   98 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~   98 (115)
                      +.+.+|..++.++...++.+.++. ...++|.+++++.|+.+-||..++.++..+....+
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             chHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            456899999999999999888765 57899999999999999999999999999987554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.21  Score=35.84  Aligned_cols=58  Identities=3%  Similarity=-0.028  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhChhHH----hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017         40 SAEIRRIPQKYSSQIAEACGPTVT----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL   97 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~~eii----~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l   97 (115)
                      +..+|..++.++..++...+.+.+    ...++|.+.++++++.++++..+.+++..+....
T Consensus       327 ~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         327 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            467899999999999887776643    4557999999999999999999999998886543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.13  Score=34.57  Aligned_cols=54  Identities=20%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG   94 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia   94 (115)
                      +++.||.+.+.++..++..-  ......++|.+.....|+.++||..++..+..+.
T Consensus        99 ~~~~vr~~a~~aL~~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          99 KSACVRATAIESTAQRCKKN--PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             CChhHHHHHHHHHHHHcccc--chhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence            46778888888888776542  2344678888888899999999988888777654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.28  Score=34.13  Aligned_cols=75  Identities=11%  Similarity=-0.034  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDK  112 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~k  112 (115)
                      +++.+|..++.|+..++....   ........+|.+.++++++.+.++.+++..+..++..-+.   ...+....|.|.+
T Consensus       114 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~  193 (264)
T d1xqra1         114 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA  193 (264)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHH
Confidence            356799999999999985433   2345567799999999999999999999999988643221   2344556677665


Q ss_pred             h
Q psy14017        113 L  113 (115)
Q Consensus       113 L  113 (115)
                      |
T Consensus       194 l  194 (264)
T d1xqra1         194 L  194 (264)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.29  Score=39.96  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         39 ESAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      .+..+|..++.++..+....|...  ....+++.++..++|+.+.||-.+++++..++..++.+.+.+.+...+..|
T Consensus       143 ~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l  219 (1207)
T d1u6gc_         143 EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL  219 (1207)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            456789888999999988887543  346789999999999999999999999999999887766655555555444

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.13  Score=35.78  Aligned_cols=48  Identities=15%  Similarity=-0.053  Sum_probs=37.5

Q ss_pred             HHHHHhhhcCCCCcchhHHHHHHHHHhcccc---cchhhhhcHHHHHHhhh
Q psy14017         67 LLPTVLNMAGDNVANVRFNVAKTLQKIGPIL---ETNVIQSQVKPALDKLN  114 (115)
Q Consensus        67 ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l---~~~~v~s~IkP~L~kL~  114 (115)
                      .+|.++++++++.|+|+..++++|..++..-   .....+....|.|.+|.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL   53 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL   53 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH
Confidence            4799999999999999999999999997432   22355566677777653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.49  Score=36.34  Aligned_cols=67  Identities=12%  Similarity=0.031  Sum_probs=55.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh
Q psy14017         34 EDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV  101 (115)
Q Consensus        34 ~~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~  101 (115)
                      +++......+|.+...++..++..++.+ +.+.++|.+.....++.++.|......+..+........
T Consensus       335 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~  401 (876)
T d1qgra_         335 ENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ  401 (876)
T ss_dssp             SSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHH
Confidence            4455566678999999999999988765 568899999999999999999999999998887665443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.81  E-value=0.65  Score=33.04  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhh---ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017         39 ESAEIRRIPQKYSSQIAEAC---GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI   96 (115)
Q Consensus        39 ~s~~VR~t~l~aI~~La~~l---~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~   96 (115)
                      +++.+|..++.++..++..-   ....+....+|.++.+++++.++++-.++.+|..++..
T Consensus        69 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~  129 (434)
T d1q1sc_          69 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD  129 (434)
T ss_dssp             GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhcc
Confidence            35678999999999987432   22345678999999999999999999999999998753

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.6  Score=34.75  Aligned_cols=74  Identities=18%  Similarity=0.110  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHHHhh--hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEA--CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~--l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      ++.+|...+.++..++..  .-..++....+|.++++++++.+.++.+++.+|..++..-+.   ...+....|.|.++
T Consensus        73 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~l  151 (529)
T d1jdha_          73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  151 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHH
Confidence            456777777787777642  113345567799999999999999999999999988754332   12344455666554

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=1.2  Score=33.07  Aligned_cols=73  Identities=10%  Similarity=-0.001  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHhh--hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017         41 AEIRRIPQKYSSQIAEA--CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL  113 (115)
Q Consensus        41 ~~VR~t~l~aI~~La~~--l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL  113 (115)
                      ..++..++.++..++..  .....+....++.+.++++++.+.++.+++.++..++...........+.|.|.++
T Consensus       200 ~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~l  274 (529)
T d1jdha_         200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL  274 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhh
Confidence            45666677777766642  22234456678888888999888899998888888765544333334445555543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.59  E-value=1.8  Score=31.91  Aligned_cols=74  Identities=19%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017         40 SAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL  113 (115)
Q Consensus        40 s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL  113 (115)
                      +..+|..++.++..++....   .......++|.++.+++++.++++-+++.++..++..-..   ......+.|.|.++
T Consensus       175 ~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~  254 (503)
T d1wa5b_         175 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL  254 (503)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Confidence            45688999999998875422   2334567899999999999999999999999999754322   13345677777664